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Sample records for dynamical discrete web

  1. GDSCalc: A Web-Based Application for Evaluating Discrete Graph Dynamical Systems

    PubMed Central

    Elmeligy Abdelhamid, Sherif H.; Kuhlman, Chris J.; Marathe, Madhav V.; Mortveit, Henning S.; Ravi, S. S.

    2015-01-01

    Discrete dynamical systems are used to model various realistic systems in network science, from social unrest in human populations to regulation in biological networks. A common approach is to model the agents of a system as vertices of a graph, and the pairwise interactions between agents as edges. Agents are in one of a finite set of states at each discrete time step and are assigned functions that describe how their states change based on neighborhood relations. Full characterization of state transitions of one system can give insights into fundamental behaviors of other dynamical systems. In this paper, we describe a discrete graph dynamical systems (GDSs) application called GDSCalc for computing and characterizing system dynamics. It is an open access system that is used through a web interface. We provide an overview of GDS theory. This theory is the basis of the web application; i.e., an understanding of GDS provides an understanding of the software features, while abstracting away implementation details. We present a set of illustrative examples to demonstrate its use in education and research. Finally, we compare GDSCalc with other discrete dynamical system software tools. Our perspective is that no single software tool will perform all computations that may be required by all users; tools typically have particular features that are more suitable for some tasks. We situate GDSCalc within this space of software tools. PMID:26263006

  2. Discrete Dynamics Lab

    NASA Astrophysics Data System (ADS)

    Wuensche, Andrew

    DDLab is interactive graphics software for creating, visualizing, and analyzing many aspects of Cellular Automata, Random Boolean Networks, and Discrete Dynamical Networks in general and studying their behavior, both from the time-series perspective — space-time patterns, and from the state-space perspective — attractor basins. DDLab is relevant to research, applications, and education in the fields of complexity, self-organization, emergent phenomena, chaos, collision-based computing, neural networks, content addressable memory, genetic regulatory networks, dynamical encryption, generative art and music, and the study of the abstract mathematical/physical/dynamical phenomena in their own right.

  3. Systoles in discrete dynamical systems

    NASA Astrophysics Data System (ADS)

    Fernandes, Sara; Grácio, Clara; Ramos, Carlos Correia

    2013-01-01

    The fruitful relationship between Geometry and Graph Theory has been explored by several authors benefiting also the Theory of discrete dynamical systems seen as Markov chains in graphs. In this work we will further explore the relation between these areas, giving a geometrical interpretation of notions from dynamical systems. In particular, we relate the topological entropy with the systole, here defined in the context of discrete dynamical systems. We show that for continuous interval maps the systole is trivial; however, for the class of interval maps with one discontinuity point the systole acquires relevance from the point of view of the dynamical behavior. Moreover, we define the geodesic length spectrum associated to a Markov interval map and we compute the referred spectrum in several examples.

  4. Discreteness effects in population dynamics

    NASA Astrophysics Data System (ADS)

    Guevara Hidalgo, Esteban; Lecomte, Vivien

    2016-05-01

    We analyse numerically the effects of small population size in the initial transient regime of a simple example population dynamics. These effects play an important role for the numerical determination of large deviation functions of additive observables for stochastic processes. A method commonly used in order to determine such functions is the so-called cloning algorithm which in its non-constant population version essentially reduces to the determination of the growth rate of a population, averaged over many realizations of the dynamics. However, the averaging of populations is highly dependent not only on the number of realizations of the population dynamics, and on the initial population size but also on the cut-off time (or population) considered to stop their numerical evolution. This may result in an over-influence of discreteness effects at initial times, caused by small population size. We overcome these effects by introducing a (realization-dependent) time delay in the evolution of populations, additional to the discarding of the initial transient regime of the population growth where these discreteness effects are strong. We show that the improvement in the estimation of the large deviation function comes precisely from these two main contributions.

  5. Terminal Dynamics Approach to Discrete Event Systems

    NASA Technical Reports Server (NTRS)

    Zak, Michail; Meyers, Ronald

    1995-01-01

    This paper presents and discusses a mathematical formalism for simulation of discrete event dynamic (DED)-a special type of 'man-made' systems to serve specific purposes of information processing. The main objective of this work is to demonstrate that the mathematical formalism for DED can be based upon a terminal model of Newtonian dynamics which allows one to relax Lipschitz conditions at some discrete points.!.

  6. Dynamic discretization method for solving Kepler's equation

    NASA Astrophysics Data System (ADS)

    Feinstein, Scott A.; McLaughlin, Craig A.

    2006-09-01

    Kepler’s equation needs to be solved many times for a variety of problems in Celestial Mechanics. Therefore, computing the solution to Kepler’s equation in an efficient manner is of great importance to that community. There are some historical and many modern methods that address this problem. Of the methods known to the authors, Fukushima’s discretization technique performs the best. By taking more of a system approach and combining the use of discretization with the standard computer science technique known as dynamic programming, we were able to achieve even better performance than Fukushima. We begin by defining Kepler’s equation for the elliptical case and describe existing solution methods. We then present our dynamic discretization method and show the results of a comparative analysis. This analysis will demonstrate that, for the conditions of our tests, dynamic discretization performs the best.

  7. Dynamic Web Pages: Performance Impact on Web Servers.

    ERIC Educational Resources Information Center

    Kothari, Bhupesh; Claypool, Mark

    2001-01-01

    Discussion of Web servers and requests for dynamic pages focuses on experimentally measuring and analyzing the performance of the three dynamic Web page generation technologies: CGI, FastCGI, and Servlets. Develops a multivariate linear regression model and predicts Web server performance under some typical dynamic requests. (Author/LRW)

  8. Discrete dislocation dynamics simulations in a cylinder

    NASA Astrophysics Data System (ADS)

    Li, Maosheng; Gao, Chan; Xu, Jianing

    2015-02-01

    Mechanical properties of material are closely related to the motion of dislocations, and predicting the interactions and resulting collective motion of dislocations is a major task in understanding and modelling plastically deforming materials. A discrete dislocation dynamics model is used to describe the orientation substructure within the microstructure. Discrete dislocation dynamics simulations in three dimensions have been used to examine the role of dislocation multiplication and mobility on the plasticity in small samples under uniaxial compression. In this paper we describe the application of the dislocation dynamics simulations in a cylindrical geometry. The boundary conditions for the simulation were estimated from the distribution of the geometrically necessary dislocation density which was obtained from the orientation map. Numerical studies benchmark could validate the accuracy of the algorithms and the importance of handling the singularity correctly. The results of the simulation explain the formation of the experimentally observed substructure.

  9. Time Discretization Approach to Dynamic Localization Conditions

    NASA Astrophysics Data System (ADS)

    Papp, E.

    An alternative wavefunction to the description of the dynamic localization of a charged particle moving on a one-dimensional lattice under the influence of a periodic time dependent electric field is written down. For this purpose the method of characteristics such as applied by Dunlap and Kenkre [Phys. Rev. B 34, 3625 (1986)] has been modified by using a different integration variable. Handling this wavefunction one is faced with the selection of admissible time values. This results in a conditionally exactly solvable problem, now by accounting specifically for the implementation of a time discretization working in conjunction with a related dynamic localization condition. In addition, one resorts to the strong field limit, which amounts to replace, to leading order, the large order zeros of the Bessel function J0(z), used before in connection with the cosinusoidal modulation, by integral multiples of π. Here z stands for the ratio between the field amplitude and the frequency. The modulation function of the electric field vanishes on the nodal points of the time grid, which stands for an effective field-free behavior. This opens the way to propose quickly tractable dynamic localization conditions for arbitrary periodic modulations. We have also found that the present time discretization approach produces the minimization of the mean square displacement characterizing the usual exact wavefunction. Other realizations and comparisons have also been presented.

  10. Discrete dynamics and non-Markovianity

    NASA Astrophysics Data System (ADS)

    Luoma, Kimmo; Piilo, Jyrki

    2016-06-01

    We study discrete quantum dynamics where a single evolution step consists of unitary system transformation followed by decoherence via coupling to an environment. Often, non-Markovian memory effects are attributed to structured environments, whereas, here, we take a more general approach within a discrete setting. In addition of controlling the structure of the environment, we are interested in how local unitaries on the open system allow the appearance and control of memory effects. Our first simple qubit model where local unitary is followed by dephasing illustrates how memory effects arise, despite having no structure in the environment the system is coupled with. We, then, elaborate on this observation by constructing a model for an open quantum walk where the unitary coin and transfer operation is augmented with the dephasing of the coin. The results demonstrate tha,t in the limit of strong dephasing within each evolution step, the combined coin-position open system always displays memory effects, and their quantities are independent of the structure of the environment. Our construction makes possible an experimentally realizable open quantum walk with photons exhibiting non-Markovian features.

  11. Non-Lipschitz Dynamics Approach to Discrete Event Systems

    NASA Technical Reports Server (NTRS)

    Zak, M.; Meyers, R.

    1995-01-01

    This paper presents and discusses a mathematical formalism for simulation of discrete event dynamics (DED) - a special type of 'man- made' system designed to aid specific areas of information processing. A main objective is to demonstrate that the mathematical formalism for DED can be based upon the terminal model of Newtonian dynamics which allows one to relax Lipschitz conditions at some discrete points.

  12. Reducing Neuronal Networks to Discrete Dynamics

    PubMed Central

    Terman, David; Ahn, Sungwoo; Wang, Xueying; Just, Winfried

    2008-01-01

    We consider a general class of purely inhibitory and excitatory-inhibitory neuronal networks, with a general class of network architectures, and characterize the complex firing patterns that emerge. Our strategy for studying these networks is to first reduce them to a discrete model. In the discrete model, each neuron is represented as a finite number of states and there are rules for how a neuron transitions from one state to another. In this paper, we rigorously demonstrate that the continuous neuronal model can be reduced to the discrete model if the intrinsic and synaptic properties of the cells are chosen appropriately. In a companion paper [1], we analyze the discrete model. PMID:18443649

  13. Dynamics of discrete screw dislocations on glide directions

    NASA Astrophysics Data System (ADS)

    Alicandro, R.; De Luca, L.; Garroni, A.; Ponsiglione, M.

    2016-07-01

    We consider a simple discrete model for screw dislocations in crystals. Using a variational discrete scheme we study the motion of a configuration of dislocations toward low energy configurations. We deduce an effective fully overdamped dynamics that follows the maximal dissipation criterion introduced in Cermelli and Gurtin (1999) and predicts motion along the glide directions of the crystal.

  14. Dynamics of a discrete auroral arc

    NASA Technical Reports Server (NTRS)

    Bruening, K.; Goertz, C. K.

    1986-01-01

    Porcupine Flight 4 data were used to determine the field-aligned currents associated with a southward moving discrete auroral arc in the postmidnight sector. Three different methods were used for determining the field-aligned current which should give identical results if the arcs are quasi-stationary and no parallel electric field exists between the payload and the dynamo region of the ionosphere. As long as the rocket is above the arc, the three methods agree. The integral of precipitating electron flux, the local magnetic field perturbations, and the divergence of the horizontal Pedersen current all indicate an upward current of 5 + or - 3 microamperes/sq m. Immediately north of the arc a strong downward current of about 10-20 microamperes/sq m is detected. The magnitude, however, is not well known because the rocket's velocity relative to the arc cannot be clearly established. Further north of the southward moving arc, the two methods that can be applied (magnetic field perturbations and divergence of the horizontal Pedersen current) yield contradictory results not only about the magnitude of the current but also about the direction of the current. It is suggested that this discrepancy is due to time-dependent electric field.

  15. Dynamics of a discrete auroral arc

    NASA Astrophysics Data System (ADS)

    Bruening, K.; Goertz, C. K.

    1986-06-01

    Porcupine Flight 4 data were used to determine the field-aligned currents associated with a southward moving discrete auroral arc in the postmidnight sector. Three different methods were used for determining the field-aligned current which should give identical results if the arcs are quasi-stationary and no parallel electric field exists between the payload and the dynamo region of the ionosphere. As long as the rocket is above the arc, the three methods agree. The integral of precipitating electron flux, the local magnetic field perturbations, and the divergence of the horizontal Pedersen current all indicate an upward current of 5 + or - 3 microamperes/sq m. Immediately north of the arc a strong downward current of about 10-20 microamperes/sq m is detected. The magnitude, however, is not well known because the rocket's velocity relative to the arc cannot be clearly established. Further north of the southward moving arc, the two methods that can be applied (magnetic field perturbations and divergence of the horizontal Pedersen current) yield contradictory results not only about the magnitude of the current but also about the direction of the current. It is suggested that this discrepancy is due to time-dependent electric field.

  16. Symbolic dynamics and the discrete variational principle

    NASA Astrophysics Data System (ADS)

    Dullin, H. R.

    1998-11-01

    We show how to construct symbolic dynamics for the class of 2d-dimensional twist mappings generated by piecewise strictly convex/concave generating functions. The method is constructive and gives an efficient way to find all periodic orbits of these high-dimensional symplectic mappings. It is illustrated with the cardioid and the stadium billiard.

  17. On the Importance of the Dynamics of Discretizations

    NASA Technical Reports Server (NTRS)

    Sweby, Peter K.; Yee, H. C.; Rai, ManMohan (Technical Monitor)

    1995-01-01

    It has been realized recently that the discrete maps resulting from numerical discretizations of differential equations can possess asymptotic dynamical behavior quite different from that of the original systems. This is the case not only for systems of Ordinary Differential Equations (ODEs) but in a more complicated manner for Partial Differential Equations (PDEs) used to model complex physics. The impact of the modified dynamics may be mild and even not observed for some numerical methods. For other classes of discretizations the impact may be pronounced, but not always obvious depending on the nonlinear model equations, the time steps, the grid spacings and the initial conditions. Non-convergence or convergence to periodic solutions might be easily recognizable but convergence to incorrect but plausible solutions may not be so obvious - even for discretized parameters within the linearized stability constraint. Based on our past four years of research, we will illustrate some of the pathology of the dynamics of discretizations, its possible impact and the usage of these schemes for model nonlinear ODEs, convection-diffusion equations and grid adaptations.

  18. Global asymptotic coherence in discrete dynamical systems

    PubMed Central

    Earn, David J. D.; Levin, Simon A.

    2006-01-01

    Spatial synchrony (coherence) in dynamical systems is of both theoretical and applied importance. We address this problem for a generalization of coupled map lattices (CMLs). In the systems we study, which we term “meta-CMLs,” the map at each lattice point may be multidimensional (corresponding, for example, to multispecies ecological systems in which all species have the same dispersal pattern). Most previous work on coherence of CMLs has focused on local stability. Here, we prove a global theorem that provides a useful sufficient condition guaranteeing decay of incoherence in meta-CMLs regardless of initial conditions and regardless of the nature of the attractors of the system. This result facilitates useful analyses of a variety of applied problems, including conservation of endangered species and eradication of pests or infectious diseases. PMID:16537469

  19. Analyzing neuronal networks using discrete-time dynamics

    NASA Astrophysics Data System (ADS)

    Ahn, Sungwoo; Smith, Brian H.; Borisyuk, Alla; Terman, David

    2010-05-01

    We develop mathematical techniques for analyzing detailed Hodgkin-Huxley like models for excitatory-inhibitory neuronal networks. Our strategy for studying a given network is to first reduce it to a discrete-time dynamical system. The discrete model is considerably easier to analyze, both mathematically and computationally, and parameters in the discrete model correspond directly to parameters in the original system of differential equations. While these networks arise in many important applications, a primary focus of this paper is to better understand mechanisms that underlie temporally dynamic responses in early processing of olfactory sensory information. The models presented here exhibit several properties that have been described for olfactory codes in an insect’s Antennal Lobe. These include transient patterns of synchronization and decorrelation of sensory inputs. By reducing the model to a discrete system, we are able to systematically study how properties of the dynamics, including the complex structure of the transients and attractors, depend on factors related to connectivity and the intrinsic and synaptic properties of cells within the network.

  20. Analyzing Neuronal Networks Using Discrete-Time Dynamics

    PubMed Central

    Ahn, Sungwoo; Smith, Brian H.; Borisyuk, Alla; Terman, David

    2010-01-01

    We develop mathematical techniques for analyzing detailed Hodgkin-Huxley like models for excitatory-inhibitory neuronal networks. Our strategy for studying a given network is to first reduce it to a discrete-time dynamical system. The discrete model is considerably easier to analyze, both mathematically and computationally, and parameters in the discrete model correspond directly to parameters in the original system of differential equations. While these networks arise in many important applications, a primary focus of this paper is to better understand mechanisms that underlie temporally dynamic responses in early processing of olfactory sensory information. The models presented here exhibit several properties that have been described for olfactory codes in an insect's Antennal Lobe. These include transient patterns of synchronization and decorrelation of sensory inputs. By reducing the model to a discrete system, we are able to systematically study how properties of the dynamics, including the complex structure of the transients and attractors, depend on factors related to connectivity and the intrinsic and synaptic properties of cells within the network. PMID:20454529

  1. Pinning synchronization of discrete dynamical networks with delay coupling

    NASA Astrophysics Data System (ADS)

    Cheng, Ranran; Peng, Mingshu; Zuo, Jun

    2016-05-01

    The purpose of this paper is to investigate the pinning synchronization analysis for nonlinear coupled delayed discrete dynamical networks with the identical or nonidentical topological structure. Based on the Lyapunov stability theory, pinning control method and linear matrix inequalities, several adaptive synchronization criteria via two kinds of pinning control method are obtained. Two examples based on Rulkov chaotic system are included to illustrate the effectiveness and verification of theoretical analysis.

  2. Some remarks on discrete physics as an ultimate dynamical theory

    SciTech Connect

    Noyes, H.P.

    1995-10-01

    The standard model of quarks and leptons currently fails to meet `t Hooft`s criterion for an ``Ultimate Dynamical Theory`` in that it contains 19 parameters which must be taken from experiment. Evaluating discrete physics in the same way we find that it requires 17 parameters and has already succeeded in computing 7 of them. While we are confident that the rest can also be computed, the very concept of an ultimate theory is incompatible with our attitude toward physics.

  3. Dynamic modelling and analysis of space webs

    NASA Astrophysics Data System (ADS)

    Yu, Yang; Baoyin, HeXi; Li, JunFeng

    2011-04-01

    Future space missions demand operations on large flexible structures, for example, space webs, the lightweight cable nets deployable in space, which can serve as platforms for very large structures or be used to capture orbital objects. The interest in research on space webs is likely to increase in the future with the development of promising applications such as Furoshiki sat-ellite of JAXA, Robotic Geostationary Orbit Restorer (ROGER) of ESA and Grapple, Retrieve And Secure Payload (GRASP) of NASA. Unlike high-tensioned nets in civil engineering, space webs may be low-tensioned or tensionless, and extremely flexible, owing to the microgravity in the orbit and the lack of support components, which may cause computational difficulties. Mathematical models are necessary in the analysis of space webs, especially in the conceptual design and evaluation for prototypes. A full three-dimensional finite element (FE) model was developed in this work. Trivial truss elements were adopted to reduce the computational complexity. Considering cable is a compression-free material and its tensile stiffness is also variable, we introduced the cable material constitutive relationship to work out an accurate and feasible model for prototype analysis and design. In the static analysis, the stress distribution and global deformation of the webs were discussed to get access to the knowledge of strength of webs with different types of meshes. In the dynamic analysis, special attention was paid to the impact problem. The max stress and global deformation were investigated. The simulation results indicate the interesting phenomenon which may be worth further research.

  4. Survey of recent work on the analysis of discretely attached corrugated shear webs.

    NASA Technical Reports Server (NTRS)

    Libove, C.

    1972-01-01

    Summary and progress report of more recent work by the author and his students on the theoretical analysis of stiffness, stresses, and deformations of corrugated shear webs with discrete, rather than continuous, attachment between the ends of the corrugations and the surrounding members. Various kinds of discrete attachment are considered, and two kinds of corrugation cross section: the trapezoidal and the curvilinear, the latter having crests and valleys made up of identical circular arcs. The more recent analyses employ the method of minimum total potential energy and the calculus of variations to obtain differential equations and boundary conditions governing the longitudinal variation of various component modes used to describe the deformations of a cross section. They are believed to be more accurate than earlier analyses in that they generally permit more degrees of freedom in the assumed deformations. In particular, they abandon the assumption, characteristic of the earlier analyses, that the straight-line generators of the corrugation remain straight during the shearing of the web.

  5. Applications of Discrete Molecular Dynamics in biology and medicine.

    PubMed

    Proctor, Elizabeth A; Dokholyan, Nikolay V

    2016-04-01

    Discrete Molecular Dynamics (DMD) is a physics-based simulation method using discrete energetic potentials rather than traditional continuous potentials, allowing microsecond time scale simulations of biomolecular systems to be performed on personal computers rather than supercomputers or specialized hardware. With the ongoing explosion in processing power even in personal computers, applications of DMD have similarly multiplied. In the past two years, researchers have used DMD to model structures of disease-implicated protein folding intermediates, study assembly of protein complexes, predict protein-protein binding conformations, engineer rescue mutations in disease-causative protein mutants, design a protein conformational switch to control cell signaling, and describe the behavior of polymeric dispersants for environmental cleanup of oil spills, among other innovative applications. PMID:26638022

  6. Discrete dynamic modeling of T cell survival signaling networks

    NASA Astrophysics Data System (ADS)

    Zhang, Ranran

    2009-03-01

    Biochemistry-based frameworks are often not applicable for the modeling of heterogeneous regulatory systems that are sparsely documented in terms of quantitative information. As an alternative, qualitative models assuming a small set of discrete states are gaining acceptance. This talk will present a discrete dynamic model of the signaling network responsible for the survival and long-term competence of cytotoxic T cells in the blood cancer T-LGL leukemia. We integrated the signaling pathways involved in normal T cell activation and the known deregulations of survival signaling in leukemic T-LGL, and formulated the regulation of each network element as a Boolean (logic) rule. Our model suggests that the persistence of two signals is sufficient to reproduce all known deregulations in leukemic T-LGL. It also indicates the nodes whose inactivity is necessary and sufficient for the reversal of the T-LGL state. We have experimentally validated several model predictions, including: (i) Inhibiting PDGF signaling induces apoptosis in leukemic T-LGL. (ii) Sphingosine kinase 1 and NFκB are essential for the long-term survival of T cells in T-LGL leukemia. (iii) T box expressed in T cells (T-bet) is constitutively activated in the T-LGL state. The model has identified potential therapeutic targets for T-LGL leukemia and can be used for generating long-term competent CTL necessary for tumor and cancer vaccine development. The success of this model, and of other discrete dynamic models, suggests that the organization of signaling networks has an determining role in their dynamics. Reference: R. Zhang, M. V. Shah, J. Yang, S. B. Nyland, X. Liu, J. K. Yun, R. Albert, T. P. Loughran, Jr., Network Model of Survival Signaling in LGL Leukemia, PNAS 105, 16308-16313 (2008).

  7. Convergence Time towards Periodic Orbits in Discrete Dynamical Systems

    PubMed Central

    San Martín, Jesús; Porter, Mason A.

    2014-01-01

    We investigate the convergence towards periodic orbits in discrete dynamical systems. We examine the probability that a randomly chosen point converges to a particular neighborhood of a periodic orbit in a fixed number of iterations, and we use linearized equations to examine the evolution near that neighborhood. The underlying idea is that points of stable periodic orbit are associated with intervals. We state and prove a theorem that details what regions of phase space are mapped into these intervals (once they are known) and how many iterations are required to get there. We also construct algorithms that allow our theoretical results to be implemented successfully in practice. PMID:24736594

  8. Convergence time towards periodic orbits in discrete dynamical systems.

    PubMed

    San Martín, Jesús; Porter, Mason A

    2014-01-01

    We investigate the convergence towards periodic orbits in discrete dynamical systems. We examine the probability that a randomly chosen point converges to a particular neighborhood of a periodic orbit in a fixed number of iterations, and we use linearized equations to examine the evolution near that neighborhood. The underlying idea is that points of stable periodic orbit are associated with intervals. We state and prove a theorem that details what regions of phase space are mapped into these intervals (once they are known) and how many iterations are required to get there. We also construct algorithms that allow our theoretical results to be implemented successfully in practice. PMID:24736594

  9. Power-law creep from discrete dislocation dynamics.

    PubMed

    Keralavarma, Shyam M; Cagin, T; Arsenlis, A; Benzerga, A Amine

    2012-12-28

    We report two-dimensional discrete dislocation dynamics simulations of combined dislocation glide and climb leading to "power-law" creep in a model aluminum crystal. The approach fully accounts for matter transport due to vacancy diffusion and its coupling with dislocation motion. The existence of quasiequilibrium or jammed states under the applied creep stresses enables observations of diffusion and climb over time scales relevant to power-law creep. The predictions for the creep rates and stress exponents fall within experimental ranges, indicating that the underlying physics is well captured. PMID:23368581

  10. Experiments of reconstructing discrete atmospheric dynamic models from data (I)

    NASA Astrophysics Data System (ADS)

    Lin, Zhenshan; Zhu, Yanyu; Deng, Ziwang

    1995-03-01

    In this paper, we give some experimental results of our study in reconstructing discrete atmospheric dynamic models from data. After a great deal of numerical experiments, we found that the logistic map, x n + 1 = 1- μx {2/n}, could be used in monthly mean temperature prediction when it was approaching the chaotic region, and its predictive results were in reverse states to the practical data. This means that the nonlinear developing behavior of the monthly mean temperature system is bifurcating back into the critical chaotic states from the chaotic ones.

  11. On control of continuous dynamical polysystems in discrete times

    SciTech Connect

    Khryashchev, S. M.

    2015-03-10

    This paper considers control systems with a finite number of control parameters, i.e. dynamical polysystems. It is assumed that control switchings can occur only at certain discrete times. Statistical methods in number theory are used to investigate the controllability of these systems. Existence of control switching times is established through analysis of Diophantine equations. The values of control switching times are found through suitable numerical methods. Certain assertions on the controllability of the polysystems of the class under consideration are proved. Some examples are considered.

  12. Novel coupling scheme to control dynamics of coupled discrete systems

    NASA Astrophysics Data System (ADS)

    Shekatkar, Snehal M.; Ambika, G.

    2015-08-01

    We present a new coupling scheme to control spatio-temporal patterns and chimeras on 1-d and 2-d lattices and random networks of discrete dynamical systems. The scheme involves coupling with an external lattice or network of damped systems. When the system network and external network are set in a feedback loop, the system network can be controlled to a homogeneous steady state or synchronized periodic state with suppression of the chaotic dynamics of the individual units. The control scheme has the advantage that its design does not require any prior information about the system dynamics or its parameters and works effectively for a range of parameters of the control network. We analyze the stability of the controlled steady state or amplitude death state of lattices using the theory of circulant matrices and Routh-Hurwitz criterion for discrete systems and this helps to isolate regions of effective control in the relevant parameter planes. The conditions thus obtained are found to agree well with those obtained from direct numerical simulations in the specific context of lattices with logistic map and Henon map as on-site system dynamics. We show how chimera states developed in an experimentally realizable 2-d lattice can be controlled using this scheme. We propose this mechanism can provide a phenomenological model for the control of spatio-temporal patterns in coupled neurons due to non-synaptic coupling with the extra cellular medium. We extend the control scheme to regulate dynamics on random networks and adapt the master stability function method to analyze the stability of the controlled state for various topologies and coupling strengths.

  13. The discrete dynamics of symmetric competition in the plane.

    PubMed

    Jiang, H; Rogers, T D

    1987-01-01

    We consider the generalized Lotka-Volterra two-species system xn + 1 = xn exp(r1(1 - xn) - s1yn) yn + 1 = yn exp(r2(1 - yn) - s2xn) originally proposed by R. M. May as a model for competitive interaction. In the symmetric case that r1 = r2 and s1 = s2, a region of ultimate confinement is found and the dynamics therein are described in some detail. The bifurcations of periodic points of low period are studied, and a cascade of period-doubling bifurcations is indicated. Within the confinement region, a parameter region is determined for the stable Hopf bifurcation of a pair of symmetrically placed period-two points, which imposes a second component of oscillation near the stable cycles. It is suggested that the symmetric competitive model contains much of the dynamical complexity to be expected in any discrete two-dimensional competitive model. PMID:3437226

  14. A Jini-based dynamic service WebGIS model

    NASA Astrophysics Data System (ADS)

    Xuan, Wenling; Chen, Xiuwan; Huang, Zhaoqiang; Zhao, Gang

    2007-06-01

    The development of current GIS technology has evolved from single platform GIS system into WebGIS. However, The Geographic Information Services (GIServices) provision and application manner cannot meet the requirement of pervasive computing environment. Jini/JAVA technique, a dynamic distributed architecture for providing spontaneous network of services, might be a tool/solution to improve the GIService performance of current WebGIS. This paper studies and analyses Jini infrastructure and its dynamic service mechanism, designs a new WebGIS architecture with Jini-based dynamic service model. The experiment shows that Jini technique can be integrated into WebGIS and to realize the dynamic services organization and management.

  15. Dynamics of Sequence -Discrete Bacterial Populations Inferred Using Metagenomes

    SciTech Connect

    Stevens, Sarah; Bendall, Matthew; Kang, Dongwan; Froula, Jeff; Egan, Rob; Chan, Leong-Keat; Tringe, Susannah; McMahon, Katherine; Malmstrom, Rex

    2014-03-14

    From a multi-year metagenomic time series of two dissimilar Wisconsin lakes we have assembled dozens of genomes using a novel approach that bins contigs into distinct genome based on sequence composition, e.g. kmer frequencies, and contig coverage patterns at various times points. Next, we investigated how these genomes, which represent sequence-discrete bacterial populations, evolved over time and used the time series to discover the population dynamics. For example, we explored changes in single nucleotide polymorphism (SNP) frequencies as well as patterns of gene gain and loss in multiple populations. Interestingly, SNP diversity was purged at nearly every genome position in some populations during the course of this study, suggesting these populations may have experienced genome-wide selective sweeps. This represents the first direct, time-resolved observations of periodic selection in natural populations, a key process predicted by the ecotype model of bacterial diversification.

  16. Bauschinger effect in thin metal films: Discrete dislocation dynamics study

    NASA Astrophysics Data System (ADS)

    Davoudi, Kamyar M.; Nicola, Lucia; Vlassak, Joost J.

    2014-01-01

    The effects of dislocation climb on plastic deformation during loading and unloading are studied using a two-dimensional discrete dislocation dynamics model. Simulations are performed for polycrystalline thin films passivated on both surfaces. Dislocation climb lowers the overall level of the stress inside thin films and reduces the work hardening rate. Climb decreases the density of dislocations in pile-ups and reduces back stresses. These factors result in a smaller Bauschinger effect on unloading compared to simulations without climb. As dislocations continue to climb at the onset of unloading and the dislocation density continues to increase, the initial unloading slope increases with decreasing unloading rate. Because climb disperses dislocations, fewer dislocations are annihilated during unloading, leading to a higher dislocation density at the end of the unloading step.

  17. Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui

    PubMed Central

    2012-01-01

    Background The R project includes a large variety of packages designed for spatial statistics. Google dynamic maps provide web based access to global maps and satellite imagery. We describe a method for displaying directly the spatial output from an R script on to a Google dynamic map. Methods This is achieved by creating a Java based web application which runs the R script and then displays the results on the dynamic map. In order to make this method easy to implement by those unfamiliar with programming Java based web applications, we have added the method to the options available in the R Web User Interface (Rwui) application. Rwui is an established web application for creating web applications for running R scripts. A feature of Rwui is that all the code for the web application being created is generated automatically so that someone with no knowledge of web programming can make a fully functional web application for running an R script in a matter of minutes. Results Rwui can now be used to create web applications that will display the results from an R script on a Google dynamic map. Results may be displayed as discrete markers and/or as continuous overlays. In addition, users of the web application may select regions of interest on the dynamic map with mouse clicks and the coordinates of the region of interest will automatically be made available for use by the R script. Conclusions This method of displaying R output on dynamic maps is designed to be of use in a number of areas. Firstly it allows statisticians, working in R and developing methods in spatial statistics, to easily visualise the results of applying their methods to real world data. Secondly, it allows researchers who are using R to study health geographics data, to display their results directly onto dynamic maps. Thirdly, by creating a web application for running an R script, a statistician can enable users entirely unfamiliar with R to run R coded statistical analyses of health geographics

  18. Consequences of symbiosis for food web dynamics.

    PubMed

    Kooi, B W; Kuijper, L D J; Kooijman, S A L M

    2004-09-01

    Basic Lotka-Volterra type models in which mutualism (a type of symbiosis where the two populations benefit both) is taken into account, may give unbounded solutions. We exclude such behaviour using explicit mass balances and study the consequences of symbiosis for the long-term dynamic behaviour of a three species system, two prey and one predator species in the chemostat. We compose a theoretical food web where a predator feeds on two prey species that have a symbiotic relationships. In addition to a species-specific resource, the two prey populations consume the products of the partner population as well. In turn, a common predator forages on these prey populations. The temporal change in the biomass and the nutrient densities in the reactor is described by ordinary differential equations (ODE). Since products are recycled, the dynamics of these abiotic materials must be taken into account as well, and they are described by odes in a similar way as the abiotic nutrients. We use numerical bifurcation analysis to assess the long-term dynamic behaviour for varying degrees of symbiosis. Attractors can be equilibria, limit cycles and chaotic attractors depending on the control parameters of the chemostat reactor. These control parameters that can be experimentally manipulated are the nutrient density of the inflow medium and the dilution rate. Bifurcation diagrams for the three species web with a facultative symbiotic association between the two prey populations, are similar to that of a bi-trophic food chain; nutrient enrichment leads to oscillatory behaviour. Predation combined with obligatory symbiotic prey-interactions has a stabilizing effect, that is, there is stable coexistence in a larger part of the parameter space than for a bi-trophic food chain. However, combined with a large growth rate of the predator, the food web can persist only in a relatively small region of the parameter space. Then, two zero-pair bifurcation points are the organizing centers. In

  19. Constant pressure and temperature discrete-time Langevin molecular dynamics.

    PubMed

    Grønbech-Jensen, Niels; Farago, Oded

    2014-11-21

    We present a new and improved method for simultaneous control of temperature and pressure in molecular dynamics simulations with periodic boundary conditions. The thermostat-barostat equations are built on our previously developed stochastic thermostat, which has been shown to provide correct statistical configurational sampling for any time step that yields stable trajectories. Here, we extend the method and develop a set of discrete-time equations of motion for both particle dynamics and system volume in order to seek pressure control that is insensitive to the choice of the numerical time step. The resulting method is simple, practical, and efficient. The method is demonstrated through direct numerical simulations of two characteristic model systems-a one-dimensional particle chain for which exact statistical results can be obtained and used as benchmarks, and a three-dimensional system of Lennard-Jones interacting particles simulated in both solid and liquid phases. The results, which are compared against the method of Kolb and Dünweg [J. Chem. Phys. 111, 4453 (1999)], show that the new method behaves according to the objective, namely that acquired statistical averages and fluctuations of configurational measures are accurate and robust against the chosen time step applied to the simulation. PMID:25416875

  20. Constant pressure and temperature discrete-time Langevin molecular dynamics

    SciTech Connect

    Grønbech-Jensen, Niels; Farago, Oded

    2014-11-21

    We present a new and improved method for simultaneous control of temperature and pressure in molecular dynamics simulations with periodic boundary conditions. The thermostat-barostat equations are built on our previously developed stochastic thermostat, which has been shown to provide correct statistical configurational sampling for any time step that yields stable trajectories. Here, we extend the method and develop a set of discrete-time equations of motion for both particle dynamics and system volume in order to seek pressure control that is insensitive to the choice of the numerical time step. The resulting method is simple, practical, and efficient. The method is demonstrated through direct numerical simulations of two characteristic model systems—a one-dimensional particle chain for which exact statistical results can be obtained and used as benchmarks, and a three-dimensional system of Lennard-Jones interacting particles simulated in both solid and liquid phases. The results, which are compared against the method of Kolb and Dünweg [J. Chem. Phys. 111, 4453 (1999)], show that the new method behaves according to the objective, namely that acquired statistical averages and fluctuations of configurational measures are accurate and robust against the chosen time step applied to the simulation.

  1. Discrete Dynamic Bayesian Network Analysis of fMRI Data

    PubMed Central

    Burge, John; Lane, Terran; Link, Hamilton; Qiu, Shibin; Clark, Vincent P.

    2010-01-01

    We examine the efficacy of using discrete Dynamic Bayesian Networks (dDBNs), a data-driven modeling technique employed in machine learning, to identify functional correlations among neuroanatomical regions of interest. Unlike many neuroimaging analysis techniques, this method is not limited by linear and/or Gaussian noise assumptions. It achieves this by modeling the time series of neuroanatomical regions as discrete, as opposed to continuous, random variables with multinomial distributions. We demonstrated this method using an fMRI dataset collected from healthy and demented elderly subjects and identify correlates based on a diagnosis of dementia. The results are validated in three ways. First, the elicited correlates are shown to be robust over leave-one-out cross-validation and, via a Fourier bootstrapping method, that they were not likely due to random chance. Second, the dDBNs identified correlates that would be expected given the experimental paradigm. Third, the dDBN's ability to predict dementia is competitive with two commonly employed machine-learning classifiers: the support vector machine and the Gaussian naïve Bayesian network. We also verify that the dDBN selects correlates based on non-linear criteria. Finally, we provide a brief analysis of the correlates elicited from Buckner et al.'s data that suggests that demented elderly subjects have reduced involvement of entorhinal and occipital cortex and greater involvement of the parietal lobe and amygdala in brain activity compared with healthy elderly (as measured via functional correlations among BOLD measurements). Limitations and extensions to the dDBN method are discussed. PMID:17990301

  2. Discretized torsional dynamics and the folding of an RNA chain.

    PubMed

    Fernández, A; Salthú, R; Cendra, H

    1999-08-01

    The aim of this work is to implement a discrete coarse codification of local torsional states of the RNA chain backbone in order to explore the long-time limit dynamics and ultimately obtain a coarse solution to the RNA folding problem. A discrete representation of the soft-mode dynamics is turned into an algorithm for a rough structure prediction. The algorithm itself is inherently parallel, as it evaluates concurrent folding possibilities by pattern recognition, but it may be implemented in a personal computer as a chain of perturbation-translation-renormalization cycles performed on a binary matrix of local topological constraints. This requires suitable representational tools and a periodic quenching of the dynamics for system renormalization. A binary coding of local topological constraints associated with each structural motif is introduced, with each local topological constraint corresponding to a local torsional state. This treatment enables us to adopt a computation time step far larger than hydrodynamic drag time scales. Accordingly, the solvent is no longer treated as a hydrodynamic drag medium. Instead we incorporate its capacity for forming local conformation-dependent dielectric domains. Each translation of the matrix of local topological constraints (LTM's) depends on the conformation-dependent local dielectric created by a confined solvent. Folding pathways are resolved as transitions between patterns of locally encoded structural signals which change within the 1 ns-100 ms time scale range. These coarse folding pathways are generated by a search at regular intervals for structural patterns in the LTM. Each pattern is recorded as a base-pairing pattern (BPP) matrix, a consensus-evaluation operation subject to a renormalization feedback loop. Since several mutually conflicting consensus evaluations might occur at a given time, the need arises for a probabilistic approach appropriate for an ensemble of RNA molecules. Thus, a statistical dynamics of

  3. An implicit finite element method for discrete dynamic fracture

    SciTech Connect

    Jobie M. Gerken

    1999-12-01

    A method for modeling the discrete fracture of two-dimensional linear elastic structures with a distribution of small cracks subject to dynamic conditions has been developed. The foundation for this numerical model is a plane element formulated from the Hu-Washizu energy principle. The distribution of small cracks is incorporated into the numerical model by including a small crack at each element interface. The additional strain field in an element adjacent to this crack is treated as an externally applied strain field in the Hu-Washizu energy principle. The resulting stiffness matrix is that of a standard plane element. The resulting load vector is that of a standard plane element with an additional term that includes the externally applied strain field. Except for the crack strain field equations, all terms of the stiffness matrix and load vector are integrated symbolically in Maple V so that fully integrated plane stress and plane strain elements are constructed. The crack strain field equations are integrated numerically. The modeling of dynamic behavior of simple structures was demonstrated within acceptable engineering accuracy. In the model of axial and transverse vibration of a beam and the breathing mode of vibration of a thin ring, the dynamic characteristics were shown to be within expected limits. The models dominated by tensile forces (the axially loaded beam and the pressurized ring) were within 0.5% of the theoretical values while the shear dominated model (the transversely loaded beam) is within 5% of the calculated theoretical value. The constant strain field of the tensile problems can be modeled exactly by the numerical model. The numerical results should therefore, be exact. The discrepancies can be accounted for by errors in the calculation of frequency from the numerical results. The linear strain field of the transverse model must be modeled by a series of constant strain elements. This is an approximation to the true strain field, so some

  4. Folding a protein by discretizing its backbone torsional dynamics

    NASA Astrophysics Data System (ADS)

    Fernández, Ariel

    1999-05-01

    The aim of this work is to provide a coarse codification of local conformational constraints associated with each folding motif of a peptide chain in order to obtain a rough solution to the protein folding problem. This is accomplished by implementing a discretized version of the soft-mode dynamics on a personal computer (PC). Our algorithm mimics a parallel process as it evaluates concurrent folding possibilities by pattern recognition. It may be implemented in a PC as a sequence of perturbation-translation-renormalization (p-t-r) cycles performed on a matrix of local topological constraints (LTM). This requires suitable representational tools and a periodic quenching of the dynamics required for renormalization. We introduce a description of the peptide chain based on a local discrete variable the values of which label the basins of attraction of the Ramachandran map for each residue. Thus, the local variable indicates the basin in which the torsional coordinates of each residue lie at a given time. In addition, a coding of local topological constraints associated with each secondary and tertiary structural motif is introduced. Our treatment enables us to adopt a computation time step of 81 ps, a value far larger than hydrodynamic drag time scales. Folding pathways are resolved as transitions between patterns of locally encoded structural signals that change within the 10 μs-100 ms time scale range. These coarse folding pathways are generated by the periodic search for structural patterns in the time-evolving LTM. Each pattern is recorded as a contact matrix, an operation subject to a renormalization feedback loop. The validity of our approach is tested vis-a-vis experimentally-probed folding pathways eventually generating tertiary interactions in proteins which recover their active structure under in vitro renaturation conditions. As an illustration, we focus on determining significant folding intermediates and late kinetic bottlenecks that occur within the

  5. Modelling machine ensembles with discrete event dynamical system theory

    NASA Technical Reports Server (NTRS)

    Hunter, Dan

    1990-01-01

    Discrete Event Dynamical System (DEDS) theory can be utilized as a control strategy for future complex machine ensembles that will be required for in-space construction. The control strategy involves orchestrating a set of interactive submachines to perform a set of tasks for a given set of constraints such as minimum time, minimum energy, or maximum machine utilization. Machine ensembles can be hierarchically modeled as a global model that combines the operations of the individual submachines. These submachines are represented in the global model as local models. Local models, from the perspective of DEDS theory , are described by the following: a set of system and transition states, an event alphabet that portrays actions that takes a submachine from one state to another, an initial system state, a partial function that maps the current state and event alphabet to the next state, and the time required for the event to occur. Each submachine in the machine ensemble is presented by a unique local model. The global model combines the local models such that the local models can operate in parallel under the additional logistic and physical constraints due to submachine interactions. The global model is constructed from the states, events, event functions, and timing requirements of the local models. Supervisory control can be implemented in the global model by various methods such as task scheduling (open-loop control) or implementing a feedback DEDS controller (closed-loop control).

  6. Dynamic hybrid algorithms for MAP inference in discrete MRFs.

    PubMed

    Alahari, Karteek; Kohli, Pushmeet; Torr, Philip H S

    2010-10-01

    In this paper, we present novel techniques that improve the computational and memory efficiency of algorithms for solving multilabel energy functions arising from discrete mrfs or crfs. These methods are motivated by the observations that the performance of minimization algorithms depends on: 1) the initialization used for the primal and dual variables and 2) the number of primal variables involved in the energy function. Our first method (dynamic alpha-expansion) works by "recycling" results from previous problem instances. The second method simplifies the energy function by "reducing" the number of unknown variables present in the problem. Further, we show that it can also be used to generate a good initialization for the dynamic alpha-expansion algorithm by "reusing" dual variables. We test the performance of our methods on energy functions encountered in the problems of stereo matching and color and object-based segmentation. Experimental results show that our methods achieve a substantial improvement in the performance of alpha-expansion, as well as other popular algorithms such as sequential tree-reweighted message passing and max-product belief propagation. We also demonstrate the applicability of our schemes for certain higher order energy functions, such as the one described in [1], for interactive texture-based image and video segmentation. In most cases, we achieve a 10-15 times speed-up in the computation time. Our modified alpha-expansion algorithm provides similar performance to Fast-PD, but is conceptually much simpler. Both alpha-expansion and Fast-PD can be made orders of magnitude faster when used in conjunction with the "reduce" scheme proposed in this paper. PMID:20724761

  7. Signatures of discrete breathers in coherent state quantum dynamics

    SciTech Connect

    Igumenshchev, Kirill; Ovchinnikov, Misha; Prezhdo, Oleg; Maniadis, Panagiotis

    2013-02-07

    In classical mechanics, discrete breathers (DBs) - a spatial time-periodic localization of energy - are predicted in a large variety of nonlinear systems. Motivated by a conceptual bridging of the DB phenomena in classical and quantum mechanical representations, we study their signatures in the dynamics of a quantum equivalent of a classical mechanical point in phase space - a coherent state. In contrast to the classical point that exhibits either delocalized or localized motion, the coherent state shows signatures of both localized and delocalized behavior. The transition from normal to local modes have different characteristics in quantum and classical perspectives. Here, we get an insight into the connection between classical and quantum perspectives by analyzing the decomposition of the coherent state into system's eigenstates, and analyzing the spacial distribution of the wave-function density within these eigenstates. We find that the delocalized and localized eigenvalue components of the coherent state are separated by a mixed region, where both kinds of behavior can be observed. Further analysis leads to the following observations. Considered as a function of coupling, energy eigenstates go through avoided crossings between tunneling and non-tunneling modes. The dominance of tunneling modes in the high nonlinearity region is compromised by the appearance of new types of modes - high order tunneling modes - that are similar to the tunneling modes but have attributes of non-tunneling modes. Certain types of excitations preferentially excite higher order tunneling modes, allowing one to study their properties. Since auto-correlation functions decrease quickly in highly nonlinear systems, short-time dynamics are sufficient for modeling quantum DBs. This work provides a foundation for implementing modern semi-classical methods to model quantum DBs, bridging classical and quantum mechanical signatures of DBs, and understanding spectroscopic experiments that

  8. Web-based dynamic Delphi: a new survey instrument

    NASA Astrophysics Data System (ADS)

    Yao, JingTao; Liu, Wei-Ning

    2006-04-01

    We present a mathematical model for a dynamic Delphi survey method which takes advantages of Web technology. A comparative study on the performance of the conventional Delphi method and the dynamic Delphi instrument is conducted. It is suggested that a dynamic Delphi survey may form a consensus quickly. However, the result may not be robust due to the judgement leaking issues.

  9. DIVE in the cosmic web: voids with Delaunay triangulation from discrete matter tracer distributions

    NASA Astrophysics Data System (ADS)

    Zhao, Cheng; Tao, Charling; Liang, Yu; Kitaura, Francisco-Shu; Chuang, Chia-Hsun

    2016-07-01

    We present a novel parameter-free cosmological void finder (DIVE, Delaunay TrIangulation Void findEr) based on Delaunay Triangulation (DT), which efficiently computes the empty spheres constrained by a discrete set of tracers. We define the spheres as DT voids, and describe their properties, including a universal density profile together with an intrinsic scatter. We apply this technique on 100 halo catalogues with volumes of 2.5 h-1Gpc side each, with a bias and number density similar to the Baryon Oscillation Spectroscopic Survey CMASS luminous red galaxies, performed with the PATCHY code. Our results show that there are two main species of DT voids, which can be characterized by the radius: they have different responses to halo redshift space distortions, to number density of tracers, and reside in different dark matter environments. Based on dynamical arguments using the tidal field tensor, we demonstrate that large DT voids are hosted in expanding regions, whereas the haloes used to construct them reside in collapsing ones. Our approach is therefore able to efficiently determine the troughs of the density field from galaxy surveys, and can be used to study their clustering. We further study the power spectra of DT voids, and find that the bias of the two populations are different, demonstrating that the small DT voids are essentially tracers of groups of haloes.

  10. Enabling a GeoWeb with Net-Centric Fusion on a Discrete Global Grid (Invited)

    NASA Astrophysics Data System (ADS)

    Peterson, P. R.

    2010-12-01

    There is a pressing expectation for general real-time access to multi-source geo-spatial content in support of evidence-based decision-making. Earth location promises to be a decentralized organizational structure for such net-centric decision support systems - the GeoWeb, Digital Earth, GEOINT2, and Planetary Skin are some terms in use. However, these platforms assume a critical provision for access and integration of multi-sources of geo-data on-demand and unassisted by the unanticipated unsophisticated end-use decision-maker. How can this occur when geo-data integration is a complex time-consuming problem? We present a solution. A discrete global grid system (DGGS) incorporates an Earth partitioning that acts as a unifying structure for encoding and integrating/fusing multi-source location-based information necessary for this class of location-based platforms. As a global reference model the DGGS is uniform over the entire planet at any resolution - from continents to bird baths. The DGGS provides fast, seamless assimilation of new, numerous, and disparate geo-data sources regardless of scale, origin, resolution, legacy formats, datum, or projection - allowing any content to reside at its own level of granularity at any location on the globe. The DGGS renders data fused, ubiquitous, searchable, and ready for analysis. Testbed development of a DGGS using the optimized Icosahedral Snyder Equal Area aperture 3 Hexagonal grid (ISEA3H) demonstrated solutions to challenging aspects of multi-source data exploitation and decision support within military geospatial-intelligence. The ISEA3H tessellation is optimized to use the fine increments and the close packed equal area partitioning properties of a square root three (hexagonal) subdivision. The investigations advanced the ISEA3H grid development to include cell indexing, quantization strategy and numeric functions required for a formal digital Earth reference model (DERM). Notably, the global index that was selected

  11. Discrete Dynamical Systems Meet the Classic Monkey-and-the-Bananas Problem.

    ERIC Educational Resources Information Center

    Gannon, Gerald E.; Martelli, Mario U.

    2001-01-01

    Presents a solution of the three-sailors-and-the-bananas problem and attempts a generalization. Introduces an interesting way of looking at the mathematics with an idea drawn from discrete dynamical systems. (KHR)

  12. Discrete dynamical system modelling for gene regulatory networks of 5-hydroxymethylfural tolerance for ethanologenic yeast

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Composed of linear difference equations, a discrete dynamic system model was designed to reconstruct transcriptional regulations in gene regulatory networks in response to 5-hydroxymethylfurfural, a bioethanol conversion inhibitor for ethanologenic yeast Saccharomyces cerevisiae. The modeling aims ...

  13. A Model of Longitudinal Tension Dynamics in Paper Webs and Implications for Web Breaks

    NASA Astrophysics Data System (ADS)

    Hristopulos, Dionissios; Uesaka, Tetsu

    2002-03-01

    Web breaks are rare but costly events with significant impact on printing presses and papermaking machines. Macroscopic paper defects have been traditionally blamed for causing web breaks, but improvements in paper quality have created interest in the microscopic causes of strength reliability of paper and the role of web tension variations. We present a continuum model of longitudinal tension dynamics in paper webs. The model predicts high straining rates at nip contacts, which may have significant impact on strength reliability. From the general model we obtain the low-frequency web response in terms of an ordinary differential equation. We show that the web is a low-pass filter that reduces the impact of dynamic speed perturbations on strain variations. We prove that the empirical relation between mechanical draw and strain increments is valid only in the steady state. We also estimate the strain variations caused by shape deformations of paper rolls, and we derive an explicit expression for the resulting frequency of web breaks based on a weak-link model of fracture. Finally, we briefly discuss the high-frequency response.

  14. Development and evaluation of a dynamic web-based application.

    PubMed

    Hsieh, Yichuan; Brennan, Patricia Flatley

    2007-01-01

    Traditional consumer health informatics (CHI) applications that were developed for lay public on the Web were commonly written in a Hypertext Markup Language (HTML). As genetics knowledge rapidly advances and requires updating information in a timely fashion, a different content structure is therefore needed to facilitate information delivery. This poster will present the process of developing a dynamic database-driven Web CHI application. PMID:18694081

  15. Dynamical behavior of fractional-order Hastings-Powell food chain model and its discretization

    NASA Astrophysics Data System (ADS)

    Matouk, A. E.; Elsadany, A. A.; Ahmed, E.; Agiza, H. N.

    2015-10-01

    In this work, the dynamical behavior of fractional-order Hastings-Powell food chain model is investigated and a new discretization method of the fractional-order system is introduced. A sufficient condition for existence and uniqueness of the solution of the proposed system is obtained. Local stability of the equilibrium points of the fractional-order system is studied. Furthermore, the necessary and sufficient conditions of stability of the discretized system are also studied. It is shown that the system's fractional parameter has effect on the stability of the discretized system which shows rich variety of dynamical behaviors such as Hopf bifurcation, an attractor crisis and chaotic attractors. Numerical simulations show the tea-cup chaotic attractor of the fractional-order system and the richer dynamical behavior of the corresponding discretized system.

  16. Discrete neural dynamic programming in wheeled mobile robot control

    NASA Astrophysics Data System (ADS)

    Hendzel, Zenon; Szuster, Marcin

    2011-05-01

    In this paper we propose a discrete algorithm for a tracking control of a two-wheeled mobile robot (WMR), using an advanced Adaptive Critic Design (ACD). We used Dual-Heuristic Programming (DHP) algorithm, that consists of two parametric structures implemented as Neural Networks (NNs): an actor and a critic, both realized in a form of Random Vector Functional Link (RVFL) NNs. In the proposed algorithm the control system consists of the DHP adaptive critic, a PD controller and a supervisory term, derived from the Lyapunov stability theorem. The supervisory term guaranties a stable realization of a tracking movement in a learning phase of the adaptive critic structure and robustness in face of disturbances. The discrete tracking control algorithm works online, uses the WMR model for a state prediction and does not require a preliminary learning. Verification has been conducted to illustrate the performance of the proposed control algorithm, by a series of experiments on the WMR Pioneer 2-DX.

  17. Astronomy Education via The Dynamic Web

    NASA Astrophysics Data System (ADS)

    Flurchick, K. M.; Avery, W.; Griego, B. F.; Culver, R.

    2011-05-01

    The ability of web applications to provide students the ability to explore and investigate astronomical concepts presented in class in a way which can help student understanding. In this presentation we report on the results of students making use of the computational tools in webMathematicaTM to analyze and investigate a variety of astronomical phenomena, including topics such as the Runge-Lenz vector, descriptions of the orbits of the exo-planets and other topics related to celestial mechanics. Using the exercise described herein, students at the North Carolina A & T State University and Colorado State University investigated via computational simulations the creation and characteristics and the effects of various parameters on these systems being studied.

  18. Dislocation dynamics of web type silicon ribbon

    NASA Technical Reports Server (NTRS)

    Dillon, O. W., Jr.; Tsai, C. T.; De Angelis, R. J.

    1987-01-01

    Silicon ribbon grown by the dendritic web process passes through a rapidly changing thermal profile in the growth direction. This rapidly changing profile induces stresses which produce changes in the dislocation density in the ribbon. A viscoplastic material response function (Haasen-Sumino model) is used herein to calculate the stresses and the dislocation density at each point in the silicon ribbon. The residual stresses are also calculated.

  19. On the Dynamics of Some Discretizations of Convection-Diffusion Equations

    NASA Technical Reports Server (NTRS)

    Sweby, Peter K.; Yee, H. C.; Rai, Man Mohan (Technical Monitor)

    1995-01-01

    Numerical discretizations of differential equations which model physical processes can possess dynamics quite different from that of the equations themselves. Recently the emphasis has been on the the dynamics of numerical discretizations for Ordinary Differential Equations (ODEs). For Partial Differential Equations (PDEs) using a method of lines approach the situation is more complex. First, the spatial discretisation may introduce dynamics not present in the original equations; second, the solution of the resulting system of ODEs is open to the modified dynamics of the ODE solver used. These two effects may interact in a complex manner. In this talk we present some results of our recent work on the dynamics of discretizations of convection-diffusion equations, including those produced using Total Variation Diminishing (TVD) schemes and adaptive grid techniques. A more general overview of the area may be found on our accompanying poster presentation.

  20. Simulating food web dynamics along a gradient: quantifying human influence.

    PubMed

    Jordán, Ferenc; Gjata, Nerta; Mei, Shu; Yule, Catherine M

    2012-01-01

    Realistically parameterized and dynamically simulated food-webs are useful tool to explore the importance of the functional diversity of ecosystems, and in particular relations between the dynamics of species and the whole community. We present a stochastic dynamical food web simulation for the Kelian River (Borneo). The food web was constructed for six different locations, arrayed along a gradient of increasing human perturbation (mostly resulting from gold mining activities) along the river. Along the river, the relative importance of grazers, filterers and shredders decreases with increasing disturbance downstream, while predators become more dominant in governing eco-dynamics. Human activity led to increased turbidity and sedimentation which adversely impacts primary productivity. Since the main difference between the study sites was not the composition of the food webs (structure is quite similar) but the strengths of interactions and the abundance of the trophic groups, a dynamical simulation approach seemed to be useful to better explain human influence. In the pristine river (study site 1), when comparing a structural version of our model with the dynamical model we found that structurally central groups such as omnivores and carnivores were not the most important ones dynamically. Instead, primary consumers such as invertebrate grazers and shredders generated a greater dynamical response. Based on the dynamically most important groups, bottom-up control is replaced by the predominant top-down control regime as distance downstream and human disturbance increased. An important finding, potentially explaining the poor structure to dynamics relationship, is that indirect effects are at least as important as direct ones during the simulations. We suggest that our approach and this simulation framework could serve systems-based conservation efforts. Quantitative indicators on the relative importance of trophic groups and the mechanistic modeling of eco-dynamics

  1. Hamiltonian dynamics for complex food webs.

    PubMed

    Kozlov, Vladimir; Vakulenko, Sergey; Wennergren, Uno

    2016-03-01

    We investigate stability and dynamics of large ecological networks by introducing classical methods of dynamical system theory from physics, including Hamiltonian and averaging methods. Our analysis exploits the topological structure of the network, namely the existence of strongly connected nodes (hubs) in the networks. We reveal new relations between topology, interaction structure, and network dynamics. We describe mechanisms of catastrophic phenomena leading to sharp changes of dynamics and hence completely altering the ecosystem. We also show how these phenomena depend on the structure of interaction between species. We can conclude that a Hamiltonian structure of biological interactions leads to stability and large biodiversity. PMID:27078396

  2. Hamiltonian dynamics for complex food webs

    NASA Astrophysics Data System (ADS)

    Kozlov, Vladimir; Vakulenko, Sergey; Wennergren, Uno

    2016-03-01

    We investigate stability and dynamics of large ecological networks by introducing classical methods of dynamical system theory from physics, including Hamiltonian and averaging methods. Our analysis exploits the topological structure of the network, namely the existence of strongly connected nodes (hubs) in the networks. We reveal new relations between topology, interaction structure, and network dynamics. We describe mechanisms of catastrophic phenomena leading to sharp changes of dynamics and hence completely altering the ecosystem. We also show how these phenomena depend on the structure of interaction between species. We can conclude that a Hamiltonian structure of biological interactions leads to stability and large biodiversity.

  3. Adaptive feedback synchronisation of complex dynamical network with discrete-time communications and delayed nodes

    NASA Astrophysics Data System (ADS)

    Wang, Tong; Ding, Yongsheng; Zhang, Lei; Hao, Kuangrong

    2016-08-01

    This paper considered the synchronisation of continuous complex dynamical networks with discrete-time communications and delayed nodes. The nodes in the dynamical networks act in the continuous manner, while the communications between nodes are discrete-time; that is, they communicate with others only at discrete time instants. The communication intervals in communication period can be uncertain and variable. By using a piecewise Lyapunov-Krasovskii function to govern the characteristics of the discrete communication instants, we investigate the adaptive feedback synchronisation and a criterion is derived to guarantee the existence of the desired controllers. The globally exponential synchronisation can be achieved by the controllers under the updating laws. Finally, two numerical examples including globally coupled network and nearest-neighbour coupled networks are presented to demonstrate the validity and effectiveness of the proposed control scheme.

  4. Food-web dynamics in a large river discontinuum

    USGS Publications Warehouse

    Cross, Wyatt F.; Baxter, Colden V.; Rosi-Marshall, Emma J.; Hall, Robert O., Jr.; Kennedy, Theodore A.; Donner, Kevin C.; Kelly, Holly A. Wellard; Seegert, Sarah E.Z.; Behn, Kathrine E.; Yard, Michael D.

    2013-01-01

    Nearly all ecosystems have been altered by human activities, and most communities are now composed of interacting species that have not co-evolved. These changes may modify species interactions, energy and material flows, and food-web stability. Although structural changes to ecosystems have been widely reported, few studies have linked such changes to dynamic food-web attributes and patterns of energy flow. Moreover, there have been few tests of food-web stability theory in highly disturbed and intensely managed freshwater ecosystems. Such synthetic approaches are needed for predicting the future trajectory of ecosystems, including how they may respond to natural or anthropogenic perturbations. We constructed flow food webs at six locations along a 386-km segment of the Colorado River in Grand Canyon (Arizona, USA) for three years. We characterized food-web structure and production, trophic basis of production, energy efficiencies, and interaction-strength distributions across a spatial gradient of perturbation (i.e., distance from Glen Canyon Dam), as well as before and after an experimental flood. We found strong longitudinal patterns in food-web characteristics that strongly correlated with the spatial position of large tributaries. Above tributaries, food webs were dominated by nonnative New Zealand mudsnails (62% of production) and nonnative rainbow trout (100% of fish production). The simple structure of these food webs led to few dominant energy pathways (diatoms to few invertebrate taxa to rainbow trout), large energy inefficiencies (i.e., Below large tributaries, invertebrate production declined ∼18-fold, while fish production remained similar to upstream sites and comprised predominately native taxa (80–100% of production). Sites below large tributaries had increasingly reticulate and detritus-based food webs with a higher prevalence of omnivory, as well as interaction strength distributions more typical of theoretically stable food webs (i

  5. Dynamic Reasoning under Probabilistic Uncertainty in the Semantic Web

    NASA Astrophysics Data System (ADS)

    Chen, Limin; Shi, Zhongzhi

    Towards a full realization of the Semantic Web as a source of processable information and services, we extend description logic ALCO@ to admit dynamic reasoning under probabilistic uncertainty. In our formalism, the crisp knowledge is encoded in DL-knowledgebase, and the uncertain one is in conditional constraints; atomic actions are represented in terms of their preconditions (conditional constraints) and effects (possibly negated ALCO@-assertions involving only atomic concepts). We also summarize some reasoning tasks in the new formalism and provide algorithms for them. This work is strictly related to the practical need of DL-based reasoning in the Semantic Web and is much closer than the prior formalisms to a practical formalism in the Web setting full of uncertain information and dynamic processing.

  6. An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks

    NASA Astrophysics Data System (ADS)

    Zañudo, Jorge G. T.; Albert, Réka

    2013-06-01

    Discrete dynamic models are a powerful tool for the understanding and modeling of large biological networks. Although a lot of progress has been made in developing analysis tools for these models, there is still a need to find approaches that can directly relate the network structure to its dynamics. Of special interest is identifying the stable patterns of activity, i.e., the attractors of the system. This is a problem for large networks, because the state space of the system increases exponentially with network size. In this work, we present a novel network reduction approach that is based on finding network motifs that stabilize in a fixed state. Notably, we use a topological criterion to identify these motifs. Specifically, we find certain types of strongly connected components in a suitably expanded representation of the network. To test our method, we apply it to a dynamic network model for a type of cytotoxic T cell cancer and to an ensemble of random Boolean networks of size up to 200. Our results show that our method goes beyond reducing the network and in most cases can actually predict the dynamical repertoire of the nodes (fixed states or oscillations) in the attractors of the system.

  7. Multiscale modeling of dislocation-precipitate interactions in Fe: From molecular dynamics to discrete dislocations

    NASA Astrophysics Data System (ADS)

    Lehtinen, Arttu; Granberg, Fredric; Laurson, Lasse; Nordlund, Kai; Alava, Mikko J.

    2016-01-01

    The stress-driven motion of dislocations in crystalline solids, and thus the ensuing plastic deformation process, is greatly influenced by the presence or absence of various pointlike defects such as precipitates or solute atoms. These defects act as obstacles for dislocation motion and hence affect the mechanical properties of the material. Here we combine molecular dynamics studies with three-dimensional discrete dislocation dynamics simulations in order to model the interaction between different kinds of precipitates and a 1/2 <111 > {110 } edge dislocation in BCC iron. We have implemented immobile spherical precipitates into the ParaDis discrete dislocation dynamics code, with the dislocations interacting with the precipitates via a Gaussian potential, generating a normal force acting on the dislocation segments. The parameters used in the discrete dislocation dynamics simulations for the precipitate potential, the dislocation mobility, shear modulus, and dislocation core energy are obtained from molecular dynamics simulations. We compare the critical stresses needed to unpin the dislocation from the precipitate in molecular dynamics and discrete dislocation dynamics simulations in order to fit the two methods together and discuss the variety of the relevant pinning and depinning mechanisms.

  8. Multiscale modeling of dislocation-precipitate interactions in Fe: From molecular dynamics to discrete dislocations.

    PubMed

    Lehtinen, Arttu; Granberg, Fredric; Laurson, Lasse; Nordlund, Kai; Alava, Mikko J

    2016-01-01

    The stress-driven motion of dislocations in crystalline solids, and thus the ensuing plastic deformation process, is greatly influenced by the presence or absence of various pointlike defects such as precipitates or solute atoms. These defects act as obstacles for dislocation motion and hence affect the mechanical properties of the material. Here we combine molecular dynamics studies with three-dimensional discrete dislocation dynamics simulations in order to model the interaction between different kinds of precipitates and a 1/2〈111〉{110} edge dislocation in BCC iron. We have implemented immobile spherical precipitates into the ParaDis discrete dislocation dynamics code, with the dislocations interacting with the precipitates via a Gaussian potential, generating a normal force acting on the dislocation segments. The parameters used in the discrete dislocation dynamics simulations for the precipitate potential, the dislocation mobility, shear modulus, and dislocation core energy are obtained from molecular dynamics simulations. We compare the critical stresses needed to unpin the dislocation from the precipitate in molecular dynamics and discrete dislocation dynamics simulations in order to fit the two methods together and discuss the variety of the relevant pinning and depinning mechanisms. PMID:26871192

  9. Navier-Stokes Dynamics by a Discrete Boltzmann Model

    NASA Technical Reports Server (NTRS)

    Rubinstein, Robet

    2010-01-01

    This work investigates the possibility of particle-based algorithms for the Navier-Stokes equations and higher order continuum approximations of the Boltzmann equation; such algorithms would generalize the well-known Pullin scheme for the Euler equations. One such method is proposed in the context of a discrete velocity model of the Boltzmann equation. Preliminary results on shock structure are consistent with the expectation that the shock should be much broader than the near discontinuity predicted by the Pullin scheme, yet narrower than the prediction of the Boltzmann equation. We discuss the extension of this essentially deterministic method to a stochastic particle method that, like DSMC, samples the distribution function rather than resolving it completely.

  10. Discrete Element Method Simulations of Ice Floe Dynamics

    NASA Astrophysics Data System (ADS)

    Calantoni, J.; Bateman, S. P.; Shi, F.; Orzech, M.; Veeramony, J.

    2014-12-01

    Ice floes were modeled using LIGGGHTS, an open source discrete element method (DEM) software, where individual elements were bonded together to make floes. The bonds were allowed to break with a critical stress calibrated to existing laboratory measurements for the compressive, tensile, and flexural strength of ice floes. The DEM allows for heterogeneous shape and size distributions of the ice floes to evolve over time. We simulated the interaction between sea ice and ocean waves in the marginal ice zone using a coupled wave-ice system. The waves were modeled with NHWAVE, a non-hydrostatic wave model that predicts instantaneous surface elevation and the three-dimensional flow field. The ice floes and waves were coupled through buoyancy and drag forces. Preliminary comparisons with field and laboratory measurements for coupled simulations will be presented.

  11. Discrete-time pilot model. [human dynamics and digital simulation

    NASA Technical Reports Server (NTRS)

    Cavalli, D.

    1978-01-01

    Pilot behavior is considered as a discrete-time process where the decision making has a sequential nature. This model differs from both the quasilinear model which follows from classical control theory and from the optimal control model which considers the human operator as a Kalman estimator-predictor. An additional factor considered is that the pilot's objective may not be adequately formulated as a quadratic cost functional to be minimized, but rather as a more fuzzy measure of the closeness with which the aircraft follows a reference trajectory. All model parameters, in the digital program simulating the pilot's behavior, were successfully compared in terms of standard-deviation and performance with those of professional pilots in IFR configuration. The first practical application of the model was in the study of its performance degradation when the aircraft model static margin decreases.

  12. Extinction dynamics of a discrete population in an oasis

    NASA Astrophysics Data System (ADS)

    Berti, Stefano; Cencini, Massimo; Vergni, Davide; Vulpiani, Angelo

    2015-07-01

    Understanding the conditions ensuring the persistence of a population is an issue of primary importance in population biology. The first theoretical approach to the problem dates back to the 1950s with the Kierstead, Slobodkin, and Skellam (KiSS) model, namely a continuous reaction-diffusion equation for a population growing on a patch of finite size L surrounded by a deadly environment with infinite mortality, i.e., an oasis in a desert. The main outcome of the model is that only patches above a critical size allow for population persistence. Here we introduce an individual-based analog of the KiSS model to investigate the effects of discreteness and demographic stochasticity. In particular, we study the average time to extinction both above and below the critical patch size of the continuous model and investigate the quasistationary distribution of the number of individuals for patch sizes above the critical threshold.

  13. Studying Human Dynamics Through Web Analytics

    NASA Astrophysics Data System (ADS)

    Ramasco, Jose; Goncalves, Bruno

    2008-03-01

    When Tim Berners Lee, a physicist at the European Center for Nuclear Research (CERN) first conceived the World Wide Web (WWW) in 1990 as a way to facilitate the sharing of scientific information and results among the centers different researchers and groups, even the most ingenious of science fiction writers could not have imagined the role it would come to play in the following decades. The increasing ubiquitousness of Internet access and the frequency with which people interact with it raise the possibility of using it to better observe, understand, and even monitor several aspects of human social behavior. Websites with large numbers of frequently returning users, such as search engines, company or university websites, are ideal for this task. The properly anonymized logs detailing the access history to Emory University's website is studied. We find that a small number of users is responsible for a finite fraction of the total activity. A saturation phenomenon is observed where, certain connections age, becoming less attractive to new activity over time. Finally, by measuring the average activity as a function of the day of the week, we find that productivity seems to be higher on Tuesdays and Wednesdays, with Sundays being the least active day.

  14. Discrete and continuous dynamics modeling of a mass moving on a flexible structure

    NASA Technical Reports Server (NTRS)

    Herman, Deborah Ann

    1992-01-01

    A general discrete methodology for modeling the dynamics of a mass that moves on the surface of a flexible structure is developed. This problem was motivated by the Space Station/Mobile Transporter system. A model reduction approach is developed to make the methodology applicable to large structural systems. To validate the discrete methodology, continuous formulations are also developed. Three different systems are examined: (1) simply-supported beam, (2) free-free beam, and (3) free-free beam with two points of contact between the mass and the flexible beam. In addition to validating the methodology, parametric studies were performed to examine how the system's physical properties affect its dynamics.

  15. Dynamics of Discrete Breathers in a Pt3Al Crystal

    NASA Astrophysics Data System (ADS)

    Starostenkov, M. D.; Potekaev, A. I.; Dmitriev, S. V.; Zakharov, P. V.; Eremin, A. M.; Kulagina, V. V.

    2016-01-01

    The discrete breathers in a Pt3Al crystal, which exhibit soft (DB1) and hard (DB2) nonlinearity, are shown to possess a number of principal differences. Unlike an immobile and stable DB1, a DB2 breather is mainly localized on four Al atoms and is stretched along one of the close-packed rows of crystals. On the other hand, DB2 can displace hundreds of nanometers along one of the directions of close packing. Having localized a considerable amount of energy, both DB1 and DB2 breathers slowly emit it during their lifetime. A collision of DB1 and DB2 results in part of their energy being released into the Al sublattice, the larger part lost by DB2 that is destroyed faster than DB1. The DB2 breather can effectively transport the energy throughout the crystal, and a collision of DBs results in its considerable localization in the crystal. A capability of transferring the energy can thus give rise to structural transformations far from the focus of excitation of such localized objects.

  16. Simulating continuous-time Hamiltonian dynamics by way of a discrete-time quantum walk

    NASA Astrophysics Data System (ADS)

    Schmitz, A. T.; Schwalm, W. A.

    2016-03-01

    Much effort has been made to connect the continuous-time and discrete-time quantum walks. We present a method for making that connection for a general graph Hamiltonian on a bigraph. Furthermore, such a scheme may be adapted for simulating discretized quantum models on a quantum computer. A coin operator is found for the discrete-time quantum walk which exhibits the same dynamics as the continuous-time evolution. Given the spectral decomposition of the graph Hamiltonian and certain restrictions, the discrete-time evolution is solved for explicitly and understood at or near important values of the parameters. Finally, this scheme is connected to past results for the 1D chain.

  17. Network analysis of the state space of discrete dynamical systems.

    PubMed

    Shreim, Amer; Grassberger, Peter; Nadler, Walter; Samuelsson, Björn; Socolar, Joshua E S; Paczuski, Maya

    2007-05-11

    We study networks representing the dynamics of elementary 1D cellular automata (CA) on finite lattices. We analyze scaling behaviors of both local and global network properties as a function of system size. The scaling of the largest node in-degree is obtained analytically for a variety of CA including rules 22, 54, and 110. We further define the path diversity as a global network measure. The coappearance of nontrivial scaling in both the hub size and the path diversity separates simple dynamics from the more complex behaviors typically found in Wolfram's class IV and some class III CA. PMID:17677672

  18. Network Analysis of the State Space of Discrete Dynamical Systems

    NASA Astrophysics Data System (ADS)

    Shreim, Amer; Grassberger, Peter; Nadler, Walter; Samuelsson, Björn; Socolar, Joshua E. S.; Paczuski, Maya

    2007-05-01

    We study networks representing the dynamics of elementary 1D cellular automata (CA) on finite lattices. We analyze scaling behaviors of both local and global network properties as a function of system size. The scaling of the largest node in-degree is obtained analytically for a variety of CA including rules 22, 54, and 110. We further define the path diversity as a global network measure. The coappearance of nontrivial scaling in both the hub size and the path diversity separates simple dynamics from the more complex behaviors typically found in Wolfram’s class IV and some class III CA.

  19. A Voice Web Application Based on Dynamic Navigation of VXML

    NASA Astrophysics Data System (ADS)

    Bhingarkar, Sukhada P.

    2010-11-01

    Voice Web, as the name suggests, accesses web resources via voice. VoiceXML is the markup language used to develop speech applications. VoiceXML is interactive and allows voice input to be received and processed by voice browser. Unfortunately, the navigation of VoiceXML document is completely controlled by application developer. Also, the user does not have flexibility to utter random word from currently executing dialog. The aim of the paper is to address the weakness of VoiceXML and develop an application, which dynamically detects recognition candidates in user content, in contrast with recognition candidates of the existing voice web, which depend on the application developer. In this application, a news service is implemented along with dictionary of IT-specific terms and dictionary of words from currently executing news.

  20. Emerging hierarchies in dynamically adapting webs

    NASA Astrophysics Data System (ADS)

    Katifori, Eleni; Graewer, Johannes; Magnasco, Marcelo; Modes, Carl

    Transport networks play a key role across four realms of eukaryotic life: slime molds, fungi, plants, and animals. In addition to the developmental algorithms that build them, many also employ adaptive strategies to respond to stimuli, damage, and other environmental changes. We model these adapting network architectures using a generic dynamical system on weighted graphs and find in simulation that these networks ultimately develop a hierarchical organization of the final weighted architecture accompanied by the formation of a system-spanning backbone. We quantify the hierarchical organization of the networks by developing an algorithm that decomposes the architecture to multiple scales and analyzes how the organization in each scale relates to that of the scale above and below it. The methodologies developed in this work are applicable to a wide range of systems including the slime mold physarum polycephalum, human microvasculature, and force chains in granular media.

  1. Bifurcations and dynamics of a discrete predator–prey system

    PubMed Central

    Asheghi, Rasoul

    2014-01-01

    In this paper, we study the dynamics behaviour of a stratum of plant–herbivore which is modelled through the following F(x, y)=(f(x, y), g(x, y)) two-dimensional map with four parameters defined by where x≥0, y≥0, and the real parameters a, b, r, k are all positive. We will focus on the case a≠b. We study the stability of fixed points and do the analysis of the period-doubling and the Neimark–Sacker bifurcations in a standard way. PMID:24963984

  2. Cross Coursing in Mathematics: Physical Modelling in Differential Equations Crossing to Discrete Dynamical Systems

    ERIC Educational Resources Information Center

    Winkel, Brian

    2012-01-01

    We give an example of cross coursing in which a subject or approach in one course in undergraduate mathematics is used in a completely different course. This situation crosses falling body modelling in an upper level differential equations course into a modest discrete dynamical systems unit of a first-year mathematics course. (Contains 1 figure.)

  3. GA-based discrete dynamic programming approach for scheduling in FMS environments.

    PubMed

    Yang, J B

    2001-01-01

    The paper presents a new genetic algorithm (GA)-based discrete dynamic programming (DDP) approach for generating static schedules in a flexible manufacturing system (FMS) environment. This GA-DDP approach adopts a sequence-dependent schedule generation strategy, where a GA is employed to generate feasible job sequences and a series of discrete dynamic programs are constructed to generate legal schedules for a given sequence of jobs. In formulating the GA, different performance criteria could be easily included. The developed DDF algorithm is capable of identifying locally optimized partial schedules and shares the computation efficiency of dynamic programming. The algorithm is designed In such a way that it does not suffer from the state explosion problem inherent in pure dynamic programming approaches in FMS scheduling. Numerical examples are reported to illustrate the approach. PMID:18244848

  4. Dynamics in a three species food-web system

    NASA Astrophysics Data System (ADS)

    Gupta, K.; Gakkhar, S.

    2016-04-01

    In this paper, the dynamics of a three species food-web system is discussed. The food-web comprises of one predator and two logistically growing competing species. The predator species is taking food from one of the competitors with Holling type II functional response. Another competitor is the amensal species for the predator of first species. The system is shown to be positive and bounded. The stability of various axial points, boundary points and interior point has been investigated. The persistence of the system has been studied. Numerical simulation has been performed to show the occurrence of Hopf bifurcation and stable limit cycle about the interior point. The presence of second competitor and its interaction with predator gives more complex dynamics than the simple prey-predator system. The existence of transcritical bifurcation has been established about two axial points. The existence of periodic attractor having period-2 solution has been shown, when amensal coefficient is chosen as bifurcation parameter.

  5. A discrete dynamical system as a model of a neural network with generalized Hebbian synapses

    NASA Astrophysics Data System (ADS)

    Pieniazek, Leszek; Wójtowicz, Bernardeta

    2005-08-01

    We study the dynamical behavior of a discrete time dynamical system which can serve as a model of a learning process. We determine fixed points of this system and basins of attraction of attracting points. This system was studied by Fernanda Botelho and James J. Jamison in [A learning rule with generalized Hebbian synapses, J. Math. Anal. Appl. 273 (2002) 529-547] but authors used its continuous counterpart to describe basins of attraction.

  6. Hybrid Raman/fiber Bragg grating sensor for distributed temperature and discrete dynamic strain measurements.

    PubMed

    Toccafondo, Iacopo; Taki, Mohammad; Signorini, Alessandro; Zaidi, Farhan; Nannipieri, Tiziano; Faralli, Stefano; Di Pasquale, Fabrizio

    2012-11-01

    We propose and experimentally demonstrate a hybrid fiber optic sensing technique that effectively combines Raman optical time domain reflectometry and in-line time-division-multiplexing for fiber Bragg grating (FBG) dynamic interrogation. The highly integrated proposed scheme employs broadband apodized low reflectivity FBGs with a single narrowband optical source and a shared receiver block, allowing for simultaneous measurements of distributed static temperature and discrete dynamic strain, over the same sensing fiber. PMID:23114320

  7. Čech cohomology of attractors of discrete dynamical systems

    NASA Astrophysics Data System (ADS)

    Ruiz del Portal, Francisco R.; Sánchez-Gabites, J. J.

    2014-10-01

    Let f:Rn→Rn be a homeomorphism and K an asymptotically stable attractor for f. The aim of this paper is to study when the inclusion of K in its basin of attraction A(K) induces isomorphisms in Čech cohomology. We show that (i) this is true if coefficients are taken in Q or Zp (p prime) and (ii) it is true for integral cohomology if and only if the Čech cohomology of K or A(K) is finitely generated. We compute the Čech cohomology of periodic point free attractors of volume-contracting R3-homeomorphisms and present applications to quite general models in population dynamics.

  8. Dynamics of quantal heating in electron systems with discrete spectra

    NASA Astrophysics Data System (ADS)

    Dietrich, Scott; Mayer, William; Vitkalov, Sergey; Bykov, A. A.

    2015-05-01

    The temporal evolution of quantal Joule heating of two-dimensional (2D) electrons in a GaAs quantum well placed in quantizing magnetic fields is studied using a difference-frequency method. The method is based on measurements of the electron conductivity oscillating at the beat frequency f =f1-f2 between two microwaves applied to the 2D system at frequencies f1 and f2. The method provides direct access to the dynamical characteristics of the heating and yields the inelastic-scattering time τi n of 2D electrons. The obtained τi n is strongly temperature dependent, varying from 0.13 ns at 5.5 K to 1 ns at 2.4 K in magnetic field B =0.333 T . When the temperature T exceeds the Landau-level separation, the relaxation rate 1 /τi n is proportional to T2, indicating electron-electron interaction as the dominant mechanism limiting the quantal heating. At lower temperatures, the rate tends to be proportional to T3, indicating considerable contribution from electron-phonon scattering.

  9. Mathematics of Web science: structure, dynamics and incentives.

    PubMed

    Chayes, Jennifer

    2013-03-28

    Dr Chayes' talk described how, to a discrete mathematician, 'all the world's a graph, and all the people and domains merely vertices'. A graph is represented as a set of vertices V and a set of edges E, so that, for instance, in the World Wide Web, V is the set of pages and E the directed hyperlinks; in a social network, V is the people and E the set of relationships; and in the autonomous system Internet, V is the set of autonomous systems (such as AOL, Yahoo! and MSN) and E the set of connections. This means that mathematics can be used to study the Web (and other large graphs in the online world) in the following way: first, we can model online networks as large finite graphs; second, we can sample pieces of these graphs; third, we can understand and then control processes on these graphs; and fourth, we can develop algorithms for these graphs and apply them to improve the online experience. PMID:23419846

  10. Discrete Adjoint-Based Design Optimization of Unsteady Turbulent Flows on Dynamic Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Nielsen, Eric J.; Diskin, Boris; Yamaleev, Nail K.

    2009-01-01

    An adjoint-based methodology for design optimization of unsteady turbulent flows on dynamic unstructured grids is described. The implementation relies on an existing unsteady three-dimensional unstructured grid solver capable of dynamic mesh simulations and discrete adjoint capabilities previously developed for steady flows. The discrete equations for the primal and adjoint systems are presented for the backward-difference family of time-integration schemes on both static and dynamic grids. The consistency of sensitivity derivatives is established via comparisons with complex-variable computations. The current work is believed to be the first verified implementation of an adjoint-based optimization methodology for the true time-dependent formulation of the Navier-Stokes equations in a practical computational code. Large-scale shape optimizations are demonstrated for turbulent flows over a tiltrotor geometry and a simulated aeroelastic motion of a fighter jet.

  11. A discrete geometric approach for simulating the dynamics of thin viscous threads

    SciTech Connect

    Audoly, B.; Clauvelin, N.; Brun, P.-T.; Bergou, M.; Grinspun, E.; Wardetzky, M.

    2013-11-15

    We present a numerical model for the dynamics of thin viscous threads based on a discrete, Lagrangian formulation of the smooth equations. The model makes use of a condensed set of coordinates, called the centerline/spin representation: the kinematic constraints linking the centerline's tangent to the orientation of the material frame is used to eliminate two out of three degrees of freedom associated with rotations. Based on a description of twist inspired from discrete differential geometry and from variational principles, we build a full-fledged discrete viscous thread model, which includes in particular a discrete representation of the internal viscous stress. Consistency of the discrete model with the classical, smooth equations for thin threads is established formally. Our numerical method is validated against reference solutions for steady coiling. The method makes it possible to simulate the unsteady behavior of thin viscous threads in a robust and efficient way, including the combined effects of inertia, stretching, bending, twisting, large rotations and surface tension.

  12. Metastability and Dynamics of Discrete Topological Singularities in Two Dimensions: A Γ-Convergence Approach

    NASA Astrophysics Data System (ADS)

    Alicandro, Roberto; De Luca, Lucia; Garroni, Adriana; Ponsiglione, Marcello

    2014-10-01

    This paper aims at building a variational approach to the dynamics of discrete topological singularities in two dimensions, based on Γ-convergence. We consider discrete systems, described by scalar functions defined on a square lattice and governed by periodic interaction potentials. Our main motivation comes from XY spin systems, described by the phase parameter, and screw dislocations, described by the displacement function. For these systems, we introduce a discrete notion of vorticity. As the lattice spacing tends to zero we derive the first order Γ-limit of the free energy which is referred to as renormalized energy and describes the interaction of vortices. As a byproduct of this analysis, we show that such systems exhibit increasingly many metastable configurations of singularities. Therefore, we propose a variational approach to the depinning and dynamics of discrete vortices, based on minimizing movements. We show that, letting first the lattice spacing and then the time step of the minimizing movements tend to zero, the vortices move according with the gradient flow of the renormalized energy, as in the continuous Ginzburg-Landau framework.

  13. Minimax terminal approach problem in two-level hierarchical nonlinear discrete-time dynamical system

    NASA Astrophysics Data System (ADS)

    Shorikov, A. F.

    2015-11-01

    We consider a discrete-time dynamical system consisting of three controllable objects. The motions of all objects are given by the corresponding vector nonlinear or linear discrete-time recurrent vector relations, and control system for its has two levels: basic (first or I level) that is dominating and subordinate level (second or II level) and both have different criterions of functioning and united a priori by determined informational and control connections defined in advance. For the dynamical system in question, we propose a mathematical formalization in the form of solving a multistep problem of two-level hierarchical minimax program control over the terminal approach process with incomplete information and give a general scheme for its solving.

  14. Distributing flight dynamics products via the World Wide Web

    NASA Technical Reports Server (NTRS)

    Woodard, Mark; Matusow, David

    1996-01-01

    The NASA Flight Dynamics Products Center (FDPC), which make available selected operations products via the World Wide Web, is reported on. The FDPC can be accessed from any host machine connected to the Internet. It is a multi-mission service which provides Internet users with unrestricted access to the following standard products: antenna contact predictions; ground tracks; orbit ephemerides; mean and osculating orbital elements; earth sensor sun and moon interference predictions; space flight tracking data network summaries; and Shuttle transport system predictions. Several scientific data bases are available through the service.

  15. Stochastic aspects of one-dimensional discrete dynamical systems: Benford's law

    NASA Astrophysics Data System (ADS)

    Snyder, Mark A.; Curry, James H.; Dougherty, Anne M.

    2001-08-01

    Benford's law owes its discovery to the ``Grubby Pages Hypothesis,'' a 19th century observation made by Simon Newcomb that the beginning pages of logarithm books were grubbier than the last few pages, implying that scientists referenced the values toward the front of the books more frequently. If a data set satisfies Benford's law, then it's significant digits will have a logarithmic distribution, which favors smaller significant digits. In this article we demonstrate two ways of creating discrete one-dimensional dynamical systems that satisfy Benford's law. We also develop a numerical simulation methodology that we use to study dynamical systems when analytical results are not readily available.

  16. Stochastic aspects of one-dimensional discrete dynamical systems: Benford's law.

    PubMed

    Snyder, M A; Curry, J H; Dougherty, A M

    2001-08-01

    Benford's law owes its discovery to the "Grubby Pages Hypothesis," a 19th century observation made by Simon Newcomb that the beginning pages of logarithm books were grubbier than the last few pages, implying that scientists referenced the values toward the front of the books more frequently. If a data set satisfies Benford's law, then it's significant digits will have a logarithmic distribution, which favors smaller significant digits. In this article we demonstrate two ways of creating discrete one-dimensional dynamical systems that satisfy Benford's law. We also develop a numerical simulation methodology that we use to study dynamical systems when analytical results are not readily available. PMID:11497692

  17. Estimation of Dynamic Discrete Choice Models by Maximum Likelihood and the Simulated Method of Moments

    PubMed Central

    Eisenhauer, Philipp; Heckman, James J.; Mosso, Stefano

    2015-01-01

    We compare the performance of maximum likelihood (ML) and simulated method of moments (SMM) estimation for dynamic discrete choice models. We construct and estimate a simplified dynamic structural model of education that captures some basic features of educational choices in the United States in the 1980s and early 1990s. We use estimates from our model to simulate a synthetic dataset and assess the ability of ML and SMM to recover the model parameters on this sample. We investigate the performance of alternative tuning parameters for SMM. PMID:26494926

  18. A microcosm model with discrete time: an approach and dynamical regimes

    NASA Astrophysics Data System (ADS)

    Evdokimov, E. V.; Shapovalov, A. V.

    A dynamical model of a closed 4-chain microcosm (with non-organic component, producers, consumers, and detritus) with discrete time is proposed. The model is based on a simple 3-chain integrable system of biological growth - eating away (non-organic component, producers, consumers) with continuous time. To construct the 4-chain model we integrate the 3-chain system and find the population numbers as explicit functions of time. By application of the time-shift operation for these functions we construct a map which describes the dynamics of the system with discrete time. This map is modified by introduction of additional terms responsible for producer and consumers death-rate, intra-species competition, and a relation describing detritus dynamics. Computer simulation of the map dynamics is performed. The model is shown to have stable regimes for correspondent values of the model parameters and initial data. The following types of dynamical regimes are also revealed: stable stationary states, decaying oscillations, limit cycles, and quasiharmonic oscillations. The detritus chain plays the role of a "friction" factor of the system oscillations. The work is supported by Russian Foundation for the Humanities.

  19. An Isometric Dynamics for a Causal Set Approach to Discrete Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Gudder, S.

    2015-12-01

    We consider a covariant causal set approach to discrete quantum gravity. We first review the microscopic picture of this approach. In this picture a universe grows one element at a time and its geometry is determined by a sequence of integers called the shell sequence. We next present the macroscopic picture which is described by a sequential growth process. We introduce a model in which the dynamics is governed by a quantum transition amplitude. The amplitude satisfies a stochastic and unitary condition and the resulting dynamics becomes isometric. We show that the dynamics preserves stochastic states. By "doubling down" on the dynamics we obtain a unitary group representation and a natural energy operator. These unitary operators are employed to define canonical position and momentum operators.

  20. A network of discrete events for the representation and analysis of diffusion dynamics

    NASA Astrophysics Data System (ADS)

    Pintus, Alberto M.; Pazzona, Federico G.; Demontis, Pierfranco; Suffritti, Giuseppe B.

    2015-11-01

    We developed a coarse-grained description of the phenomenology of diffusive processes, in terms of a space of discrete events and its representation as a network. Once a proper classification of the discrete events underlying the diffusive process is carried out, their transition matrix is calculated on the basis of molecular dynamics data. This matrix can be represented as a directed, weighted network where nodes represent discrete events, and the weight of edges is given by the probability that one follows the other. The structure of this network reflects dynamical properties of the process of interest in such features as its modularity and the entropy rate of nodes. As an example of the applicability of this conceptual framework, we discuss here the physics of diffusion of small non-polar molecules in a microporous material, in terms of the structure of the corresponding network of events, and explain on this basis the diffusivity trends observed. A quantitative account of these trends is obtained by considering the contribution of the various events to the displacement autocorrelation function.

  1. Reinforcement genetic approach to coefficient estimation for multivariable nonlinear discrete-time dynamical systems

    NASA Astrophysics Data System (ADS)

    Chang, Wei-Der; Yan, Jun-Juh

    2006-10-01

    In this paper, we propose a novel genetic algorithm (GA) with a multi-crossover fashion to estimate the associated coefficients for a class of nonlinear discrete-time multivariable dynamical systems. Unlike the traditional crossover method of using two chromosomes, the proposed method uses three chromosomes to achieve a crossover. According to the adjusting direction by crossing three chromosomes, more excellent offspring can be produced. To solve the identification problem of multivariable nonlinear discrete-time systems, each of estimated system coefficients represents a gene, and a collection of genes is referred to as a chromosome in the view of GA. The chromosomes in the population are then evolved using the proposed multi-crossover method. An illustrative example of multivariable nonlinear systems is given to demonstrate the effectiveness, as compared with the traditional crossover method, of the proposed method.

  2. Minimizing the total service time of discrete dynamic berth allocation problem by an iterated greedy heuristic.

    PubMed

    Lin, Shih-Wei; Ying, Kuo-Ching; Wan, Shu-Yen

    2014-01-01

    Berth allocation is the forefront operation performed when ships arrive at a port and is a critical task in container port optimization. Minimizing the time ships spend at berths constitutes an important objective of berth allocation problems. This study focuses on the discrete dynamic berth allocation problem (discrete DBAP), which aims to minimize total service time, and proposes an iterated greedy (IG) algorithm to solve it. The proposed IG algorithm is tested on three benchmark problem sets. Experimental results show that the proposed IG algorithm can obtain optimal solutions for all test instances of the first and second problem sets and outperforms the best-known solutions for 35 out of 90 test instances of the third problem set. PMID:25295295

  3. Discrete Adjoint-Based Design for Unsteady Turbulent Flows On Dynamic Overset Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Nielsen, Eric J.; Diskin, Boris

    2012-01-01

    A discrete adjoint-based design methodology for unsteady turbulent flows on three-dimensional dynamic overset unstructured grids is formulated, implemented, and verified. The methodology supports both compressible and incompressible flows and is amenable to massively parallel computing environments. The approach provides a general framework for performing highly efficient and discretely consistent sensitivity analysis for problems involving arbitrary combinations of overset unstructured grids which may be static, undergoing rigid or deforming motions, or any combination thereof. General parent-child motions are also accommodated, and the accuracy of the implementation is established using an independent verification based on a complex-variable approach. The methodology is used to demonstrate aerodynamic optimizations of a wind turbine geometry, a biologically-inspired flapping wing, and a complex helicopter configuration subject to trimming constraints. The objective function for each problem is successfully reduced and all specified constraints are satisfied.

  4. Minimizing the Total Service Time of Discrete Dynamic Berth Allocation Problem by an Iterated Greedy Heuristic

    PubMed Central

    2014-01-01

    Berth allocation is the forefront operation performed when ships arrive at a port and is a critical task in container port optimization. Minimizing the time ships spend at berths constitutes an important objective of berth allocation problems. This study focuses on the discrete dynamic berth allocation problem (discrete DBAP), which aims to minimize total service time, and proposes an iterated greedy (IG) algorithm to solve it. The proposed IG algorithm is tested on three benchmark problem sets. Experimental results show that the proposed IG algorithm can obtain optimal solutions for all test instances of the first and second problem sets and outperforms the best-known solutions for 35 out of 90 test instances of the third problem set. PMID:25295295

  5. Modeling and 2-D discrete simulation of dislocation dynamics for plastic deformation of metal

    NASA Astrophysics Data System (ADS)

    Liu, Juan; Cui, Zhenshan; Ou, Hengan; Ruan, Liqun

    2013-05-01

    Two methods are employed in this paper to investigate the dislocation evolution during plastic deformation of metal. One method is dislocation dynamic simulation of two-dimensional discrete dislocation dynamics (2D-DDD), and the other is dislocation dynamics modeling by means of nonlinear analysis. As screw dislocation is prone to disappear by cross-slip, only edge dislocation is taken into account in simulation. First, an approach of 2D-DDD is used to graphically simulate and exhibit the collective motion of a large number of discrete dislocations. In the beginning, initial grains are generated in the simulation cells according to the mechanism of grain growth and the initial dislocation is randomly distributed in grains and relaxed under the internal stress. During the simulation process, the externally imposed stress, the long range stress contribution of all dislocations and the short range stress caused by the grain boundaries are calculated. Under the action of these forces, dislocations begin to glide, climb, multiply, annihilate and react with each other. Besides, thermal activation process is included. Through the simulation, the distribution of dislocation and the stress-strain curves can be obtained. On the other hand, based on the classic dislocation theory, the variation of the dislocation density with time is described by nonlinear differential equations. Finite difference method (FDM) is used to solve the built differential equations. The dislocation evolution at a constant strain rate is taken as an example to verify the rationality of the model.

  6. World-trade web: Topological properties, dynamics, and evolution

    NASA Astrophysics Data System (ADS)

    Fagiolo, Giorgio; Reyes, Javier; Schiavo, Stefano

    2009-03-01

    This paper studies the statistical properties of the web of import-export relationships among world countries using a weighted-network approach. We analyze how the distributions of the most important network statistics measuring connectivity, assortativity, clustering, and centrality have coevolved over time. We show that all node-statistic distributions and their correlation structure have remained surprisingly stable in the last 20years —and are likely to do so in the future. Conversely, the distribution of (positive) link weights is slowly moving from a log-normal density towards a power law. We also characterize the autoregressive properties of network-statistics dynamics. We find that network-statistics growth rates are well-proxied by fat-tailed densities like the Laplace or the asymmetric exponential power. Finally, we find that all our results are reasonably robust to a few alternative, economically meaningful, weighting schemes.

  7. Mesoscale dynamic coupling of finite- and discrete-element methods for fluid-particle interactions.

    PubMed

    Srivastava, S; Yazdchi, K; Luding, S

    2014-08-01

    A new method for two-way fluid-particle coupling on an unstructured mesoscopically coarse mesh is presented. In this approach, we combine a (higher order) finite-element method (FEM) on the moving mesh for the fluid with a soft sphere discrete-element method for the particles. The novel feature of the proposed scheme is that the FEM mesh is a dynamic Delaunay triangulation based on the positions of the moving particles. Thus, the mesh can be multi-purpose: it provides (i) a framework for the discretization of the Navier-Stokes equations, (ii) a simple tool for detecting contacts between moving particles, (iii) a basis for coarse-graining or upscaling, and (iv) coupling with other physical fields (temperature, electromagnetic, etc.). This approach is suitable for a wide range of dilute and dense particulate flows, because the mesh resolution adapts with particle density in a given region. Two-way momentum exchange is implemented using semi-empirical drag laws akin to other popular approaches; for example, the discrete particle method, where a finite-volume solver on a coarser, fixed grid is used. We validate the methodology with several basic test cases, including single- and double-particle settling with analytical and empirical expectations, and flow through ordered and random porous media, when compared against finely resolved FEM simulations of flow through fixed arrays of particles. PMID:24982251

  8. Parallel Discrete Molecular Dynamics Simulation With Speculation and In-Order Commitment*†

    PubMed Central

    Khan, Md. Ashfaquzzaman; Herbordt, Martin C.

    2011-01-01

    Discrete molecular dynamics simulation (DMD) uses simplified and discretized models enabling simulations to advance by event rather than by timestep. DMD is an instance of discrete event simulation and so is difficult to scale: even in this multi-core era, all reported DMD codes are serial. In this paper we discuss the inherent difficulties of scaling DMD and present our method of parallelizing DMD through event-based decomposition. Our method is microarchitecture inspired: speculative processing of events exposes parallelism, while in-order commitment ensures correctness. We analyze the potential of this parallelization method for shared-memory multiprocessors. Achieving scalability required extensive experimentation with scheduling and synchronization methods to mitigate serialization. The speed-up achieved for a variety of system sizes and complexities is nearly 6× on an 8-core and over 9× on a 12-core processor. We present and verify analytical models that account for the achieved performance as a function of available concurrency and architectural limitations. PMID:21822327

  9. An easy implementation of displacement calculations in 3D discrete dislocation dynamics codes

    NASA Astrophysics Data System (ADS)

    Fivel, Marc; Depres, Christophe

    2014-10-01

    Barnett's coordinate-free expression of the displacement field of a triangular loop in an isotropic media is revisited in a view to be implemented in 3D discrete dislocation dynamics codes. A general meshing procedure solving the problems of non-planar loops is presented. The method is user-friendly and can be used in numerical simulations since it gives the contribution of each dislocation segment to the global displacement field without defining the connectivity of closed loops. Easy to implement in parallel calculations, this method is successfully applied to large-scale simulations.

  10. Recent Progress in Discrete Dislocation Dynamics and Its Applications to Micro Plasticity

    NASA Astrophysics Data System (ADS)

    Po, Giacomo; Mohamed, Mamdouh S.; Crosby, Tamer; Erel, Can; El-Azab, Anter; Ghoniem, Nasr

    2014-09-01

    We present a self-contained review of the discrete dislocation dynamics (DDD) method for the numerical investigation of plasticity in crystals, focusing on recent development and implementation progress. The review covers the theoretical foundations of DDD within the framework of incompatible elasticity, its numerical implementation via the nodal method, the extension of the method to finite domains and several implementation details. Applications of the method to current topics in micro-plasticity are presented, including the size effects in nano-indentation, the evolution of the dislocation microstructure in persistent slip bands, and the phenomenon of dislocation avalanches in micro-pillar compression.

  11. Recent Progress in Discrete Dislocation Dynamics and Its Applications to Micro Plasticity

    NASA Astrophysics Data System (ADS)

    Po, Giacomo; Mohamed, Mamdouh S.; Crosby, Tamer; Erel, Can; El-Azab, Anter; Ghoniem, Nasr

    2014-10-01

    We present a self-contained review of the discrete dislocation dynamics (DDD) method for the numerical investigation of plasticity in crystals, focusing on recent development and implementation progress. The review covers the theoretical foundations of DDD within the framework of incompatible elasticity, its numerical implementation via the nodal method, the extension of the method to finite domains and several implementation details. Applications of the method to current topics in micro-plasticity are presented, including the size effects in nano-indentation, the evolution of the dislocation microstructure in persistent slip bands, and the phenomenon of dislocation avalanches in micro-pillar compression.

  12. Discretization errors in molecular dynamics simulations with deterministic and stochastic thermostats

    SciTech Connect

    Davidchack, Ruslan L.

    2010-12-10

    We investigate the influence of numerical discretization errors on computed averages in a molecular dynamics simulation of TIP4P liquid water at 300 K coupled to different deterministic (Nose-Hoover and Nose-Poincare) and stochastic (Langevin) thermostats. We propose a couple of simple practical approaches to estimating such errors and taking them into account when computing the averages. We show that it is possible to obtain accurate measurements of various system quantities using step sizes of up to 70% of the stability threshold of the integrator, which for the system of TIP4P liquid water at 300 K corresponds to the step size of about 7 fs.

  13. Neural networks for tracking of unknown SISO discrete-time nonlinear dynamic systems.

    PubMed

    Aftab, Muhammad Saleheen; Shafiq, Muhammad

    2015-11-01

    This article presents a Lyapunov function based neural network tracking (LNT) strategy for single-input, single-output (SISO) discrete-time nonlinear dynamic systems. The proposed LNT architecture is composed of two feedforward neural networks operating as controller and estimator. A Lyapunov function based back propagation learning algorithm is used for online adjustment of the controller and estimator parameters. The controller and estimator error convergence and closed-loop system stability analysis is performed by Lyapunov stability theory. Moreover, two simulation examples and one real-time experiment are investigated as case studies. The achieved results successfully validate the controller performance. PMID:26456201

  14. Dissipative soliton dynamics in a discrete magnetic nano-dot chain

    SciTech Connect

    Lee, Kyeong-Dong; You, Chun-Yeol; Song, Hyon-Seok; Shin, Sung-Chul; Park, Byong-Guk

    2014-02-03

    Soliton dynamics is studied in a discrete magnetic nano-dot chain by means of micromagnetic simulations together with an analytic model equation. A soliton under a dissipative system is driven by an applied field. The field-driven dissipative soliton enhances its mobility nonlinearly, as the characteristic frequency and the intrinsic Gilbert damping decrease. During the propagation, the soliton emits spin waves which act as an extrinsic damping channel. The characteristic frequency, the maximum velocity, and the localization length of the soliton are found to be proportional to the threshold field, the threshold velocity, and the initial mobility, respectively.

  15. Chaos analysis and delayed-feedback control in a discrete dynamic coupled map traffic model

    NASA Astrophysics Data System (ADS)

    Fang, Yaling; Shi, Zhongke

    2015-03-01

    The presence of chaos in traffic flow is studied using a modified discrete dynamic coupled map model which is derived from both the flow-density-speed fundamental diagram and Del Castillo's speed-density model. The modified model employs occupancy as its new variable and introduces a coupling strength with the consideration of effect of the front adjacent vehicle. And we analyze its stability of the control system and provide a procedure to design the decentralized delayed-feedback controllers for the traffic control system. These theoretical results are illustrated by numerical simulations.

  16. Dynamic Space for Rent: Using Commercial Web Hosting to Develop a Web 2.0 Intranet

    ERIC Educational Resources Information Center

    Hodgins, Dave

    2010-01-01

    The explosion of Web 2.0 into libraries has left many smaller academic libraries (and other libraries with limited computing resources or support) to work in the cloud using free Web applications. The use of commercial Web hosting is an innovative approach to the problem of inadequate local resources. While the idea of insourcing IT will seem…

  17. Analysis of discrete and continuous distributions of ventilatory time constants from dynamic computed tomography

    NASA Astrophysics Data System (ADS)

    Doebrich, Marcus; Markstaller, Klaus; Karmrodt, Jens; Kauczor, Hans-Ulrich; Eberle, Balthasar; Weiler, Norbert; Thelen, Manfred; Schreiber, Wolfgang G.

    2005-04-01

    In this study, an algorithm was developed to measure the distribution of pulmonary time constants (TCs) from dynamic computed tomography (CT) data sets during a sudden airway pressure step up. Simulations with synthetic data were performed to test the methodology as well as the influence of experimental noise. Furthermore the algorithm was applied to in vivo data. In five pigs sudden changes in airway pressure were imposed during dynamic CT acquisition in healthy lungs and in a saline lavage ARDS model. The fractional gas content in the imaged slice (FGC) was calculated by density measurements for each CT image. Temporal variations of the FGC were analysed assuming a model with a continuous distribution of exponentially decaying time constants. The simulations proved the feasibility of the method. The influence of experimental noise could be well evaluated. Analysis of the in vivo data showed that in healthy lungs ventilation processes can be more likely characterized by discrete TCs whereas in ARDS lungs continuous distributions of TCs are observed. The temporal behaviour of lung inflation and deflation can be characterized objectively using the described new methodology. This study indicates that continuous distributions of TCs reflect lung ventilation mechanics more accurately compared to discrete TCs.

  18. A multiply parallel implementation of finite element-based discrete dislocation dynamics for arbitrary geometries

    NASA Astrophysics Data System (ADS)

    Crone, Joshua C.; Chung, Peter W.; Leiter, Kenneth W.; Knap, Jaroslaw; Aubry, Sylvie; Hommes, Gregg; Arsenlis, Athanasios

    2014-04-01

    Discrete dislocation dynamics (DD) approaches have proven useful in modeling the dynamics of large ensembles of dislocations. Continuing interest in finite body effects via image stresses has extended DD numerical approaches to improve the handling of surfaces. However, a physically accurate, yet computationally scalable, implementation has been elusive. This paper presents a new framework and implementation of a finite element-based discrete DD code that (1) treats arbitrarily shaped non-convex surfaces through image tractions, (2) allows for systematic refinement of the finite element mesh both in the bulk and on the surface and (3) provides a platform to scale to relatively larger and lengthier simulations. The approach is based on the capabilities of the Parallel Dislocation Simulator coupled through a distributed shared memory implementation for the calculation of large numbers of dislocation segments interacting with an independently large number of surface finite elements. Surface tracking approaches enable topological features at surfaces to be modeled. We verify the computed results via comparisons with analytical solutions for an infinite screw dislocation and prismatic loop near a surface and examine surface effects on a Frank-Read source. Convergence of the image force error with h- and p-refinement is shown to indicate the computational robustness. Additionally, through larger numerical experiments, we demonstrate the new capabilities in a three-dimensional elastic body of finite extent.

  19. Insight into the dynamics of granular column collapse using Discrete Element Methods and laboratory experiments

    NASA Astrophysics Data System (ADS)

    Martin, Hugo; Mangeney, Anne; Farin, Maxime; Richard, Patrick

    2016-04-01

    The mechanical behavior of granular flows is still an open issue. In particular, quantitative agreement between the detailed dynamics of the flow and laboratory experiments is necessary to better constrain the performance and limits of the models. We propose here to compare quantitatively the flow profiles and the force during granular column collapse simulated using Discrete Element Models and laboratory experiments. These small scale experiments are performed with dry granular material released initially from a cylinder on a sloping plane. The flow profiles and the acoustic signal generated by the granular impacts and stresses on the plane are recorded systematically [Farin et al., 2015]. These experiments are simulated using the Discrete Element Method Modys [Richard et al., 2000]. We show that the effect of the removing gate should be taken into account in the model in order to quantatively reproduce the flow dynamics. Furthermore we compare the simulated and observed acoustic signals that are generated by the fluctuating stresses exerted by the grains on the substrate in different frequency bands. [1] P. Richard et Luc Oger. 2000 Etude de la géométrie de milieux granulaires modèles tridimensionnels par simulation numérique. [2] Farin, M., Mangeney, A., Toussaint, R., De Rosny, J., Shapiro, N., Dewez, T., Hibert, C., Mathon, C., Sedan, O., Berger. 2015, Characterization of rockfalls from seismic signal: insights from laboratory experiments

  20. Optimal discrete-time dynamic output-feedback design - A w-domain approach

    NASA Technical Reports Server (NTRS)

    Ha, Cheolkeun; Ly, Uy-Loi

    1991-01-01

    An alternative method for optimal digital control design is described in this paper. The method is based on the usage of the w-transform and has many attractive design features. One of these is its immediate connection with frequency loop-shaping techniques that are now popular and effective for multivariable control synthesis in continuous-time domain. Furthermore, any design algorithms originally developed for continuous-time systems can now be immediately extended to the discrete-time domain. The main results presented in this paper are the exact problem formulation and solution of an optimal discrete-time dynamic output-feedback design in the w-domain involving a quadratic performance index to random disturbances. In addition, necessary conditions for optimality are obtained for the numerical solution of the optimal output-feedback compensator design. A numerical example is presented illustrating its application to the design of a low-order dynamic compensator in a stability augmentation system of a commercial transport.

  1. Optimal control for unknown discrete-time nonlinear Markov jump systems using adaptive dynamic programming.

    PubMed

    Zhong, Xiangnan; He, Haibo; Zhang, Huaguang; Wang, Zhanshan

    2014-12-01

    In this paper, we develop and analyze an optimal control method for a class of discrete-time nonlinear Markov jump systems (MJSs) with unknown system dynamics. Specifically, an identifier is established for the unknown systems to approximate system states, and an optimal control approach for nonlinear MJSs is developed to solve the Hamilton-Jacobi-Bellman equation based on the adaptive dynamic programming technique. We also develop detailed stability analysis of the control approach, including the convergence of the performance index function for nonlinear MJSs and the existence of the corresponding admissible control. Neural network techniques are used to approximate the proposed performance index function and the control law. To demonstrate the effectiveness of our approach, three simulation studies, one linear case, one nonlinear case, and one single link robot arm case, are used to validate the performance of the proposed optimal control method. PMID:25420238

  2. Complex dynamics of a delayed discrete neural network of two nonidentical neurons

    SciTech Connect

    Chen, Yuanlong; Huang, Tingwen; Huang, Yu

    2014-03-15

    In this paper, we discover that a delayed discrete Hopfield neural network of two nonidentical neurons with self-connections and no self-connections can demonstrate chaotic behaviors. To this end, we first transform the model, by a novel way, into an equivalent system which has some interesting properties. Then, we identify the chaotic invariant set for this system and show that the dynamics of this system within this set is topologically conjugate to the dynamics of the full shift map with two symbols. This confirms chaos in the sense of Devaney. Our main results generalize the relevant results of Huang and Zou [J. Nonlinear Sci. 15, 291–303 (2005)], Kaslik and Balint [J. Nonlinear Sci. 18, 415–432 (2008)] and Chen et al. [Sci. China Math. 56(9), 1869–1878 (2013)]. We also give some numeric simulations to verify our theoretical results.

  3. Interplay between topology and dynamics in the World Trade Web

    NASA Astrophysics Data System (ADS)

    Garlaschelli, D.; di Matteo, T.; Aste, T.; Caldarelli, G.; Loffredo, M. I.

    2007-05-01

    We present an empirical analysis of the network formed by the trade relationships between all world countries, or World Trade Web (WTW). Each (directed) link is weighted by the amount of wealth flowing between two countries, and each country is characterized by the value of its Gross Domestic Product (GDP). By analysing a set of year-by-year data covering the time interval 1950 2000, we show that the dynamics of all GDP values and the evolution of the WTW (trade flow and topology) are tightly coupled. The probability that two countries are connected depends on their GDP values, supporting recent theoretical models relating network topology to the presence of a `hidden' variable (or fitness). On the other hand, the topology is shown to determine the GDP values due to the exchange between countries. This leads us to a new framework where the fitness value is a dynamical variable determining, and at the same time depending on, network topology in a continuous feedback.

  4. Dynamic selection mechanism for quality of service aware web services

    NASA Astrophysics Data System (ADS)

    D'Mello, Demian Antony; Ananthanarayana, V. S.

    2010-02-01

    A web service is an interface of the software component that can be accessed by standard Internet protocols. The web service technology enables an application to application communication and interoperability. The increasing number of web service providers throughout the globe have produced numerous web services providing the same or similar functionality. This necessitates the use of tools and techniques to search the suitable services available over the Web. UDDI (universal description, discovery and integration) is the first initiative to find the suitable web services based on the requester's functional demands. However, the requester's requirements may also include non-functional aspects like quality of service (QoS). In this paper, the authors define a QoS model for QoS aware and business driven web service publishing and selection. The authors propose a QoS requirement format for the requesters, to specify their complex demands on QoS for the web service selection. The authors define a tree structure called quality constraint tree (QCT) to represent the requester's variety of requirements on QoS properties having varied preferences. The paper proposes a QoS broker based architecture for web service selection, which facilitates the requesters to specify their QoS requirements to select qualitatively optimal web service. A web service selection algorithm is presented, which ranks the functionally similar web services based on the degree of satisfaction of the requester's QoS requirements and preferences. The paper defines web service provider qualities to distinguish qualitatively competitive web services. The paper also presents the modelling and selection mechanism for the requester's alternative constraints defined on the QoS. The authors implement the QoS broker based system to prove the correctness of the proposed web service selection mechanism.

  5. A dynamic model of mobile concrete pump boom based on discrete time transfer matrix method

    NASA Astrophysics Data System (ADS)

    Ren, Wu; Wu, Yunxin; Zhang, Zhaowei

    2013-12-01

    Mobile concrete pump boom is typical multibody large-scale motion manipulator. Due to posture constantly change in working process, kinematic rule and dynamic characteristic are difficult to solve. A dynamics model of a mobile concrete pump boom is established based on discrete time transfer matrix method (DTTMM). The boom system is divided into sub-structure A and substructure B. Sub-structure A is composed by the 1st boom and hydraulic actuator as well as the support. And substructure B is consists of the other three booms and corresponding hydraulic actuators. In the model, the booms and links are regarded as rigid elements and the hydraulic cylinders are equivalent to spring-damper. The booms are driven by the controllable hydraulic actuators. The overall dynamic equation and transfer matrix of the model can be assembled by sub-structures A and B. To get a precise result, step size and integration parameters are studied then. Next the tip displacement is calculated and compared with the result of ADAMS software. The displacement and rotation angle curves of the proposed method fit well with the ADAMS model. Besides it is convenient in modeling and saves time. So it is suitable for mobile concrete pump boom real-time monitoring and dynamic analysis. All of these provide reference to boom optimize and engineering application of such mechanisms.

  6. Sparsified-dynamics modeling of discrete point vortices with graph theory

    NASA Astrophysics Data System (ADS)

    Taira, Kunihiko; Nair, Aditya

    2014-11-01

    We utilize graph theory to derive a sparsified interaction-based model that captures unsteady point vortex dynamics. The present model builds upon the Biot-Savart law and keeps the number of vortices (graph nodes) intact and reduces the number of inter-vortex interactions (graph edges). We achieve this reduction in vortex interactions by spectral sparsification of graphs. This approach drastically reduces the computational cost to predict the dynamical behavior, sharing characteristics of reduced-order models. Sparse vortex dynamics are illustrated through an example of point vortex clusters interacting amongst themselves. We track the centroids of the individual vortex clusters to evaluate the error in bulk motion of the point vortices in the sparsified setup. To further improve the accuracy in predicting the nonlinear behavior of the vortices, resparsification strategies are employed for the sparsified interaction-based models. The model retains the nonlinearity of the interaction and also conserves the invariants of discrete vortex dynamics; namely the Hamiltonian, linear impulse, and angular impulse as well as circulation. Work supported by US Army Research Office (W911NF-14-1-0386) and US Air Force Office of Scientific Research (YIP: FA9550-13-1-0183).

  7. Event-driven Monte Carlo: Exact dynamics at all time scales for discrete-variable models

    NASA Astrophysics Data System (ADS)

    Mendoza-Coto, Alejandro; Díaz-Méndez, Rogelio; Pupillo, Guido

    2016-06-01

    We present an algorithm for the simulation of the exact real-time dynamics of classical many-body systems with discrete energy levels. In the same spirit of kinetic Monte Carlo methods, a stochastic solution of the master equation is found, with no need to define any other phase-space construction. However, unlike existing methods, the present algorithm does not assume any particular statistical distribution to perform moves or to advance the time, and thus is a unique tool for the numerical exploration of fast and ultra-fast dynamical regimes. By decomposing the problem in a set of two-level subsystems, we find a natural variable step size, that is well defined from the normalization condition of the transition probabilities between the levels. We successfully test the algorithm with known exact solutions for non-equilibrium dynamics and equilibrium thermodynamical properties of Ising-spin models in one and two dimensions, and compare to standard implementations of kinetic Monte Carlo methods. The present algorithm is directly applicable to the study of the real-time dynamics of a large class of classical Markovian chains, and particularly to short-time situations where the exact evolution is relevant.

  8. ThermoData Engine (TDE): software implementation of the dynamic data evaluation concept. 6. Dynamic web-based data dissemination through the NIST Web Thermo Tables.

    PubMed

    Kroenlein, Kenneth; Muzny, Chris D; Diky, Vladimir; Kazakov, Andrei F; Chirico, Robert D; Magee, Joseph W; Abdulagatov, Ilmutdin; Frenkel, Michael

    2011-06-27

    ThermoData Engine (TDE) is the first full-scale software implementation of the dynamic data evaluation concept, as reported recently in this journal. In the present paper, we describe the development of a World Wide Web-based interface to TDE evaluations of pure compound properties, including critical properties, phase boundary equilibria (vapor pressures, sublimation pressures, and crystal-liquid boundary pressures), densities, energetic properties, and transport properties. This includes development of a system for caching evaluation results to maintain high availability and an advanced window-in-window interface that leverages modern Web-browser technologies. Challenges associated with bringing the principal advantages of the TDE technology to the Web are described, as are compromises to maintain general access and speed of interaction while remaining true to the tenets of dynamic data evaluation. Future extensions of the interface and associated Web-services are outlined. PMID:21517125

  9. Complexity of analysis and verification problems for communicating automata and discrete dynamical systems.

    SciTech Connect

    Hunt, H. B.; Rosenkrantz, D. J.; Barrett, C. L.; Marathe, M. V.; Ravi, S. S.

    2001-01-01

    We identify several simple but powerful concepts, techniques, and results; and we use them to characterize the complexities of a number of basic problems II, that arise in the analysis and verification of the following models M of communicating automata and discrete dynamical systems: systems of communicating automata including both finite and infinite cellular automata, transition systems, discrete dynamical systems, and succinctly-specified finite automata. These concepts, techniques, and results are centered on the following: (1) reductions Of STATE-REACHABILITY problems, especially for very simple systems of communicating copies of a single simple finite automaton, (2) reductions of generalized CNF satisfiability problems [Sc78], especially to very simple communicating systems of copies of a few basic acyclic finite sequential machines, and (3) reductions of the EMPTINESS and EMPTINESS-OF-INTERSECTION problems, for several kinds of regular set descriptors. For systems of communicating automata and transition systems, the problems studied include: all equivalence relations and simulation preorders in the Linear-time/Branching-time hierarchies of equivalence relations and simulation preorders of [vG90, vG93], both without and with the hiding abstraction. For discrete dynamical systems, the problems studied include the INITIAL and BOUNDARY VALUE PROBLEMS (denoted IVPs and BVPs, respectively), for nonlinear difference equations over many different algebraic structures, e.g. all unitary rings, all finite unitary semirings, and all lattices. For succinctly specified finite automata, the problems studied also include the several problems studied in [AY98], e.g. the EMPTINESS, EMPTINESS-OF-INTERSECTION, EQUIVALENCE and CONTAINMENT problems. The concepts, techniques, and results presented unify and significantly extend many of the known results in the literature, e.g. [Wo86, Gu89, BPT91, GM92, Ra92, HT94, SH+96, AY98, AKY99, RH93, SM73, Hu73, HRS76, HR78], for

  10. COMPLEXITY OF ANALYSIS & VERIFICATION PROBLEMS FOR COMMUNICATING AUTOMATA & DISCRETE DYNAMICAL SYSTEMS

    SciTech Connect

    H. B. HUNT; D. J. ROSENKRANTS; ET AL

    2001-03-01

    We identify several simple but powerful concepts, techniques, and results; and we use them to characterize the complexities of a number of basic problems II, that arise in the analysis and verification of the following models M of communicating automata and discrete dynamical systems: systems of communicating automata including both finite and infinite cellular automata, transition systems, discrete dynamical systems, and succinctly-specified finite automata. These concepts, techniques, and results are centered on the following: (i) reductions Of STATE-REACHABILITY problems, especially for very simple systems of communicating copies of a single simple finite automaton, (ii) reductions of generalized CNF satisfiability problems [Sc78], especially to very simple communicating systems of copies of a few basic acyclic finite sequential machines, and (iii) reductions of the EMPTINESS and EMPTINESS-OF-INTERSECTION problems, for several kinds of regular set descriptors. For systems of communicating automata and transition systems, the problems studied include: all equivalence relations and simulation preorders in the Linear-time/Branching-time hierarchies of equivalence relations and simulation preorders of [vG90, vG93], both without and with the hiding abstraction. For discrete dynamical systems, the problems studied include the INITIAL and BOUNDARY VALUE PROBLEMS (denoted IVPs and BVPS, respectively), for nonlinear difference equations over many different algebraic structures, e.g. all unitary rings, all finite unitary semirings, and all lattices. For succinctly-specified finite automata, the problems studied also include the several problems studied in [AY98], e.g. the EMPTINESS, EMPTINESS-OF-INTERSECTION, EQUIVALENCE and CONTAINMENT problems. The concepts, techniques, and results presented unify and significantly extend many of the known results in the literature, e.g. [Wo86, Gu89, BPT91, GM92, Ra92, HT94, SH+96, AY98, AKY99, RH93, SM73, Hu73, HRS76, HR78], for

  11. A Dynamic Discrete Dislocation Plasticity Method for the Dimulation of Plastic Relaxation under Shock Loading

    NASA Astrophysics Data System (ADS)

    Gurrutxaga-Lerma, Benat; Sutton, Adrian; Eakins, Daniel; Balint, Daniel; Dini, Daniele

    2013-06-01

    This talk intends to offer some insight as to how Discrete Dislocation Plasticity (DDP) can be adapted to simulate plastic relaxation processes under weak shock loading and high strain rates. In those circumstances, dislocations are believed to be the main cause of plastic relaxation in crystalline solids. Direct simulation of dislocations as the dynamic agents of plastic relaxation in those cases remains a challenge. DDP, where dislocations are modelled as discrete discontinuities in elastic continuum media, is often unable to adequately simulate plastic relaxation because it treats dislocation motion quasi-statically, thus neglecting the time-dependent nature of the elastic fields and assuming that they instantaneously acquire the shape and magnitude predicted by elastostatics. Under shock loading, this assumption leads to several artefacts that can only be overcome with a fully time-dependent formulation of the elastic fields. In this talk one of such formulations for the creation, annihilation and arbitrary motion of straight edge dislocations will be presented. These solutions are applied in a two-dimensional model of time-dependent plastic relaxation under shock loading, and some relevant results will be presented. EPSRC CDT in Theory and Simulation of Materials

  12. Dust emission modelling around a stockpile by using computational fluid dynamics and discrete element method

    NASA Astrophysics Data System (ADS)

    Derakhshani, S. M.; Schott, D. L.; Lodewijks, G.

    2013-06-01

    Dust emissions can have significant effects on the human health, environment and industry equipment. Understanding the dust generation process helps to select a suitable dust preventing approach and also is useful to evaluate the environmental impact of dust emission. To describe these processes, numerical methods such as Computational Fluid Dynamics (CFD) are widely used, however nowadays particle based methods like Discrete Element Method (DEM) allow researchers to model interaction between particles and fluid flow. In this study, air flow over a stockpile, dust emission, erosion and surface deformation of granular material in the form of stockpile are studied by using DEM and CFD as a coupled method. Two and three dimensional simulations are respectively developed for CFD and DEM methods to minimize CPU time. The standard κ-ɛ turbulence model is used in a fully developed turbulent flow. The continuous gas phase and the discrete particle phase link to each other through gas-particle void fractions and momentum transfer. In addition to stockpile deformation, dust dispersion is studied and finally the accuracy of stockpile deformation results obtained by CFD-DEM modelling will be validated by the agreement with the existing experimental data.

  13. Discrete states and carrier-phonon scattering in quantum dot population dynamics

    PubMed Central

    Man, Minh Tan; Lee, Hong Seok

    2015-01-01

    The influence of the growth conditions of multilayer CdTe/ZnTe quantum dots (QDs) on Si substrate upon their carrier dynamics is studied using intensity integration and broadening photoluminescence. The unusual temperature dependence of the line broadening is explained using a model for interband transitions that involves a lowest discrete electronic state (1Se) with different discrete hole states (1S3/2 and 2S3/2) and a 1P transition. These transitions are expected to play a critical role in both the thermally activated energy and the line broadening of the QDs. We also demonstrate that a thermally activated transition between two different states occurs with band low-temperature quenching, with values separated by 5.8–16 meV. The main nonradiative process is thermal escape assisted by carrier scattering via emission of longitudinal phonons through the hole states at high temperature, with an average energy of 19.3–20.2 meV. PMID:25652600

  14. Continuous and discrete extreme climatic events affecting the dynamics of a high-arctic reindeer population.

    PubMed

    Chan, Kung-Sik; Mysterud, Atle; Øritsland, Nils Are; Severinsen, Torbjørn; Stenseth, Nils Chr

    2005-10-01

    Climate at northern latitudes are currently changing both with regard to the mean and the temporal variability at any given site, increasing the frequency of extreme events such as cold and warm spells. Here we use a conceptually new modelling approach with two different dynamic terms of the climatic effects on a Svalbard reindeer population (the Brøggerhalvøya population) which underwent an extreme icing event ("locked pastures") with 80% reduction in population size during one winter (1993/94). One term captures the continuous and linear effect depending upon the Arctic Oscillation and another the discrete (rare) "event" process. The introduction of an "event" parameter describing the discrete extreme winter resulted in a more parsimonious model. Such an approach may be useful in strongly age-structured ungulate populations, with young and very old individuals being particularly prone to mortality factors during adverse conditions (resulting in a population structure that differs before and after extreme climatic events). A simulation study demonstrates that our approach is able to properly detect the ecological effects of such extreme climate events. PMID:16010537

  15. Policy iteration adaptive dynamic programming algorithm for discrete-time nonlinear systems.

    PubMed

    Liu, Derong; Wei, Qinglai

    2014-03-01

    This paper is concerned with a new discrete-time policy iteration adaptive dynamic programming (ADP) method for solving the infinite horizon optimal control problem of nonlinear systems. The idea is to use an iterative ADP technique to obtain the iterative control law, which optimizes the iterative performance index function. The main contribution of this paper is to analyze the convergence and stability properties of policy iteration method for discrete-time nonlinear systems for the first time. It shows that the iterative performance index function is nonincreasingly convergent to the optimal solution of the Hamilton-Jacobi-Bellman equation. It is also proven that any of the iterative control laws can stabilize the nonlinear systems. Neural networks are used to approximate the performance index function and compute the optimal control law, respectively, for facilitating the implementation of the iterative ADP algorithm, where the convergence of the weight matrices is analyzed. Finally, the numerical results and analysis are presented to illustrate the performance of the developed method. PMID:24807455

  16. Food web dynamics affect Northeast Arctic cod recruitment

    PubMed Central

    Hjermann, Dag Ø; Bogstad, Bjarte; Eikeset, Anne Maria; Ottersen, Geir; Gjøsæter, Harald; Stenseth, Nils Chr

    2006-01-01

    Proper management of ecosystems requires an understanding of both the species interactions as well as the effect of climate variation. However, a common problem is that the available time-series are of different lengths. Here, we present a general approach for studying the dynamic structure of such interactions. Specifically, we analyse the recruitment of the world's largest cod stock, the Northeast Arctic cod. Studies based on data starting in the 1970–1980s indicate that this stock is affected by temperature through a variety of pathways. However, the value of such studies is somewhat limited by the fact that they are based on a quite specific ecological and climatic situation. Recently, this stock has consisted of fairly young fish and the spawning stock has consisted of relatively few age groups. In this study, we develop a model for the effect of capelin (the cod's main prey) and herring on cod recruitment since 1973. Based on this model, we analyse data on cod, herring and temperature going back to 1921 and find that food-web effects explain a significant part of the cod recruitment variation back to around 1950. PMID:17254990

  17. Web Services for Dynamic Coloring of UAVSAR Images

    NASA Astrophysics Data System (ADS)

    Wang, Jun; Pierce, Marlon; Donnellan, Andrea; Parker, Jay

    2015-08-01

    QuakeSim has implemented a service-based Geographic Information System to enable users to access large amounts of Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) data through an online interface. The QuakeSim Interferometric Synthetic Aperture Radar (InSAR) profile tool calculates radar-observed displacement (from an unwrapped interferogram product) along user-specified lines. Pre-rendered thumbnails with InSAR fringe patterns are used to display interferogram and unwrapped phase images on a Google Map in the InSAR profile tool. One challenge with this tool lies in the user visually identifying regions of interest when drawing the profile line. This requires that the user correctly interpret the InSAR imagery, which currently uses fringe patterns. The mapping between pixel color and pixel value is not a one-to-one relationship from the InSAR fringe pattern, and it causes difficulty in understanding general displacement information for QuakeSim users. The goal of this work is to generate color maps that directly reflect the pixel values (displacement) as an addition to the pre-rendered images. Because of an extremely uneven distribution of pixel values on an InSAR image, a histogram-based, nonlinear color template generation algorithm is currently under development. A web service enables on-the-fly coloring of UAVSAR images with dynamically generated color templates.

  18. Penalised logistic regression and dynamic prediction for discrete-time recurrent event data.

    PubMed

    Elgmati, Entisar; Fiaccone, Rosemeire L; Henderson, R; Matthews, John N S

    2015-10-01

    We consider methods for the analysis of discrete-time recurrent event data, when interest is mainly in prediction. The Aalen additive model provides an extremely simple and effective method for the determination of covariate effects for this type of data, especially in the presence of time-varying effects and time varying covariates, including dynamic summaries of prior event history. The method is weakened for predictive purposes by the presence of negative estimates. The obvious alternative of a standard logistic regression analysis at each time point can have problems of stability when event frequency is low and maximum likelihood estimation is used. The Firth penalised likelihood approach is stable but in removing bias in regression coefficients it introduces bias into predicted event probabilities. We propose an alterative modified penalised likelihood, intermediate between Firth and no penalty, as a pragmatic compromise between stability and bias. Illustration on two data sets is provided. PMID:25626559

  19. Transmission Expansion Planning - A Multiyear Dynamic Approach Using a Discrete Evolutionary Particle Swarm Optimization Algorithm

    NASA Astrophysics Data System (ADS)

    Rocha, M. C.; Saraiva, J. T.

    2012-10-01

    The basic objective of Transmission Expansion Planning (TEP) is to schedule a number of transmission projects along an extended planning horizon minimizing the network construction and operational costs while satisfying the requirement of delivering power safely and reliably to load centres along the horizon. This principle is quite simple, but the complexity of the problem and the impact on society transforms TEP on a challenging issue. This paper describes a new approach to solve the dynamic TEP problem, based on an improved discrete integer version of the Evolutionary Particle Swarm Optimization (EPSO) meta-heuristic algorithm. The paper includes sections describing in detail the EPSO enhanced approach, the mathematical formulation of the TEP problem, including the objective function and the constraints, and a section devoted to the application of the developed approach to this problem. Finally, the use of the developed approach is illustrated using a case study based on the IEEE 24 bus 38 branch test system.

  20. Dynamical Localization for Discrete and Continuous Random Schrödinger Operators

    NASA Astrophysics Data System (ADS)

    Germinet, F.; De Bièvre, S.

    We show for a large class of random Schrödinger operators Ho on and on that dynamical localization holds, i.e. that, with probability one, for a suitable energy interval I and for q a positive real, Here ψ is a function of sufficiently rapid decrease, and PI(Ho) is the spectral projector of Ho corresponding to the interval I. The result is obtained through the control of the decay of the eigenfunctions of Ho and covers, in the discrete case, the Anderson tight-binding model with Bernoulli potential (dimension ν = 1) or singular potential (ν > 1), and in the continuous case Anderson as well as random Landau Hamiltonians.

  1. Discrete Molecular Dynamics Can Predict Helical Prestructured Motifs in Disordered Proteins

    PubMed Central

    Han, Kyou-Hoon; Dokholyan, Nikolay V.; Tompa, Péter; Kalmár, Lajos; Hegedűs, Tamás

    2014-01-01

    Intrinsically disordered proteins (IDPs) lack a stable tertiary structure, but their short binding regions termed Pre-Structured Motifs (PreSMo) can form transient secondary structure elements in solution. Although disordered proteins are crucial in many biological processes and designing strategies to modulate their function is highly important, both experimental and computational tools to describe their conformational ensembles and the initial steps of folding are sparse. Here we report that discrete molecular dynamics (DMD) simulations combined with replica exchange (RX) method efficiently samples the conformational space and detects regions populating α-helical conformational states in disordered protein regions. While the available computational methods predict secondary structural propensities in IDPs based on the observation of protein-protein interactions, our ab initio method rests on physical principles of protein folding and dynamics. We show that RX-DMD predicts α-PreSMos with high confidence confirmed by comparison to experimental NMR data. Moreover, the method also can dissect α-PreSMos in close vicinity to each other and indicate helix stability. Importantly, simulations with disordered regions forming helices in X-ray structures of complexes indicate that a preformed helix is frequently the binding element itself, while in other cases it may have a role in initiating the binding process. Our results indicate that RX-DMD provides a breakthrough in the structural and dynamical characterization of disordered proteins by generating the structural ensembles of IDPs even when experimental data are not available. PMID:24763499

  2. Dynamics of Investor Attention on the Social Web

    ERIC Educational Resources Information Center

    Li, Xian

    2013-01-01

    The World Wide Web has been revolutionizing how investors produce and consume information while participating in financial markets. Both the amount of information and the speed it flows around have achieved unprecedented magnitudes. The preeminent change is the growth of investor communities on the social web, which give rise to multidimensional…

  3. Web-based Toolkit for Dynamic Generation of Data Processors

    NASA Astrophysics Data System (ADS)

    Patel, J.; Dascalu, S.; Harris, F. C.; Benedict, K. K.; Gollberg, G.; Sheneman, L.

    2011-12-01

    All computation-intensive scientific research uses structured datasets, including hydrology and all other types of climate-related research. When it comes to testing their hypotheses, researchers might use the same dataset differently, and modify, transform, or convert it to meet their research needs. Currently, many researchers spend a good amount of time performing data processing and building tools to speed up this process. They might routinely repeat the same process activities for new research projects, spending precious time that otherwise could be dedicated to analyzing and interpreting the data. Numerous tools are available to run tests on prepared datasets and many of them work with datasets in different formats. However, there is still a significant need for applications that can comprehensively handle data transformation and conversion activities and help prepare the various processed datasets required by the researchers. We propose a web-based application (a software toolkit) that dynamically generates data processors capable of performing data conversions, transformations, and customizations based on user-defined mappings and selections. As a first step, the proposed solution allows the users to define various data structures and, in the next step, can select various file formats and data conversions for their datasets of interest. In a simple scenario, the core of the proposed web-based toolkit allows the users to define direct mappings between input and output data structures. The toolkit will also support defining complex mappings involving the use of pre-defined sets of mathematical, statistical, date/time, and text manipulation functions. Furthermore, the users will be allowed to define logical cases for input data filtering and sampling. At the end of the process, the toolkit is designed to generate reusable source code and executable binary files for download and use by the scientists. The application is also designed to store all data

  4. Dynamical Approach Study of Spurious Steady-State Numerical Solutions of Nonlinear Differential Equations. 2; Global Asymptotic Behavior of Time Discretizations; 2. Global Asymptotic Behavior of time Discretizations

    NASA Technical Reports Server (NTRS)

    Yee, H. C.; Sweby, P. K.

    1995-01-01

    The global asymptotic nonlinear behavior of 1 1 explicit and implicit time discretizations for four 2 x 2 systems of first-order autonomous nonlinear ordinary differential equations (ODES) is analyzed. The objectives are to gain a basic understanding of the difference in the dynamics of numerics between the scalars and systems of nonlinear autonomous ODEs and to set a baseline global asymptotic solution behavior of these schemes for practical computations in computational fluid dynamics. We show how 'numerical' basins of attraction can complement the bifurcation diagrams in gaining more detailed global asymptotic behavior of time discretizations for nonlinear differential equations (DEs). We show how in the presence of spurious asymptotes the basins of the true stable steady states can be segmented by the basins of the spurious stable and unstable asymptotes. One major consequence of this phenomenon which is not commonly known is that this spurious behavior can result in a dramatic distortion and, in most cases, a dramatic shrinkage and segmentation of the basin of attraction of the true solution for finite time steps. Such distortion, shrinkage and segmentation of the numerical basins of attraction will occur regardless of the stability of the spurious asymptotes, and will occur for unconditionally stable implicit linear multistep methods. In other words, for the same (common) steady-state solution the associated basin of attraction of the DE might be very different from the discretized counterparts and the numerical basin of attraction can be very different from numerical method to numerical method. The results can be used as an explanation for possible causes of error, and slow convergence and nonconvergence of steady-state numerical solutions when using the time-dependent approach for nonlinear hyperbolic or parabolic PDES.

  5. A Dynamic Recommender System for Improved Web Usage Mining and CRM Using Swarm Intelligence

    PubMed Central

    Alphy, Anna; Prabakaran, S.

    2015-01-01

    In modern days, to enrich e-business, the websites are personalized for each user by understanding their interests and behavior. The main challenges of online usage data are information overload and their dynamic nature. In this paper, to address these issues, a WebBluegillRecom-annealing dynamic recommender system that uses web usage mining techniques in tandem with software agents developed for providing dynamic recommendations to users that can be used for customizing a website is proposed. The proposed WebBluegillRecom-annealing dynamic recommender uses swarm intelligence from the foraging behavior of a bluegill fish. It overcomes the information overload by handling dynamic behaviors of users. Our dynamic recommender system was compared against traditional collaborative filtering systems. The results show that the proposed system has higher precision, coverage, F1 measure, and scalability than the traditional collaborative filtering systems. Moreover, the recommendations given by our system overcome the overspecialization problem by including variety in recommendations. PMID:26229978

  6. A Dynamic Recommender System for Improved Web Usage Mining and CRM Using Swarm Intelligence.

    PubMed

    Alphy, Anna; Prabakaran, S

    2015-01-01

    In modern days, to enrich e-business, the websites are personalized for each user by understanding their interests and behavior. The main challenges of online usage data are information overload and their dynamic nature. In this paper, to address these issues, a WebBluegillRecom-annealing dynamic recommender system that uses web usage mining techniques in tandem with software agents developed for providing dynamic recommendations to users that can be used for customizing a website is proposed. The proposed WebBluegillRecom-annealing dynamic recommender uses swarm intelligence from the foraging behavior of a bluegill fish. It overcomes the information overload by handling dynamic behaviors of users. Our dynamic recommender system was compared against traditional collaborative filtering systems. The results show that the proposed system has higher precision, coverage, F1 measure, and scalability than the traditional collaborative filtering systems. Moreover, the recommendations given by our system overcome the overspecialization problem by including variety in recommendations. PMID:26229978

  7. Simulation of the dynamic packing behavior of preparative chromatography columns via discrete particle modeling.

    PubMed

    Dorn, Martin; Hekmat, Dariusch

    2016-03-01

    Preparative packed-bed chromatography using polymer-based, compressible, porous resins is a powerful method for purification of macromolecular bioproducts. During operation, a complex, hysteretic, thus, history-dependent packed bed behavior is often observed but theoretical understanding of the causes is limited. Therefore, a rigorous modeling approach of the chromatography column on the particle scale has been made which takes into account interparticle micromechanics and fluid-particle interactions for the first time. A three-dimensional deterministic model was created by applying Computational Fluid Dynamics (CFD) coupled with the Discrete Element Method (DEM). The column packing behavior during either flow or mechanical compression was investigated in-silico and in laboratory experiments. A pronounced axial compression-relaxation profile was identified that differed for both compression strategies. Void spaces were clearly visible in the packed bed after compression. It was assumed that the observed bed inhomogeneity was because of a force-chain network at the particle scale. The simulation satisfactorily reproduced the measured behavior regarding packing compression as well as pressure-flow dependency. Furthermore, the particle Young's modulus and particle-wall friction as well as interparticle friction were identified as crucial parameters affecting packing dynamics. It was concluded that compaction of the chromatographic bed is rather because of particle rearrangement than particle deformation. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 32:363-371, 2016. PMID:26588806

  8. Discrete-time nonlinear HJB solution using approximate dynamic programming: convergence proof.

    PubMed

    Al-Tamimi, Asma; Lewis, Frank L; Abu-Khalaf, Murad

    2008-08-01

    Convergence of the value-iteration-based heuristic dynamic programming (HDP) algorithm is proven in the case of general nonlinear systems. That is, it is shown that HDP converges to the optimal control and the optimal value function that solves the Hamilton-Jacobi-Bellman equation appearing in infinite-horizon discrete-time (DT) nonlinear optimal control. It is assumed that, at each iteration, the value and action update equations can be exactly solved. The following two standard neural networks (NN) are used: a critic NN is used to approximate the value function, whereas an action network is used to approximate the optimal control policy. It is stressed that this approach allows the implementation of HDP without knowing the internal dynamics of the system. The exact solution assumption holds for some classes of nonlinear systems and, specifically, in the specific case of the DT linear quadratic regulator (LQR), where the action is linear and the value quadratic in the states and NNs have zero approximation error. It is stressed that, for the LQR, HDP may be implemented without knowing the system A matrix by using two NNs. This fact is not generally appreciated in the folklore of HDP for the DT LQR, where only one critic NN is generally used. PMID:18632382

  9. Discrete meso-element simulation of the failure behavior of short-fiber composites under dynamic loading

    NASA Astrophysics Data System (ADS)

    Liu, Wenyan; Tang, Z. P.; Liu, Yunxin

    2000-04-01

    In recent years, more attention has been paid to a better understanding of the failure behavior and mechanism of heterogeneous materials at the meso-scale level. In this paper, the crack initiation and development in epoxy composites reinforced with short steel fibers under dynamic loading were simulated and analyzed with the 2D Discrete Meso-Element Dynamic Method. Results show that the damage process depends greatly on the binding property between matrix and fibers.

  10. Discrete two-sex models of population dynamics: On modelling the mating function

    NASA Astrophysics Data System (ADS)

    Bessa-Gomes, Carmen; Legendre, Stéphane; Clobert, Jean

    2010-09-01

    Although sexual reproduction has long been a central subject of theoretical ecology, until recently its consequences for population dynamics were largely overlooked. This is now changing, and many studies have addressed this issue, showing that when the mating system is taken into account, the population dynamics depends on the relative abundance of males and females, and is non-linear. Moreover, sexual reproduction increases the extinction risk, namely due to the Allee effect. Nevertheless, different studies have identified diverse potential consequences, depending on the choice of mating function. In this study, we investigate the consequences of three alternative mating functions that are frequently used in discrete population models: the minimum; the harmonic mean; and the modified harmonic mean. We consider their consequences at three levels: on the probability that females will breed; on the presence and intensity of the Allee effect; and on the extinction risk. When we consider the harmonic mean, the number of times the individuals of the least abundant sex mate exceeds their mating potential, which implies that with variable sex-ratios the potential reproductive rate is no longer under the modeller's control. Consequently, the female breeding probability exceeds 1 whenever the sex-ratio is male-biased, which constitutes an obvious problem. The use of the harmonic mean is thus only justified if we think that this parameter should be re-defined in order to represent the females' breeding rate and the fact that females may reproduce more than once per breeding season. This phenomenon buffers the Allee effect, and reduces the extinction risk. However, when we consider birth-pulse populations, such a phenomenon is implausible because the number of times females can reproduce per birth season is limited. In general, the minimum or modified harmonic mean mating functions seem to be more suitable for assessing the impact of mating systems on population dynamics.

  11. Discrete Molecular Dynamics Distinguishes Nativelike Binding Poses from Decoys in Difficult Targets

    PubMed Central

    Proctor, Elizabeth A.; Yin, Shuangye; Tropsha, Alexander; Dokholyan, Nikolay V.

    2012-01-01

    Virtual screening is one of the major tools used in computer-aided drug discovery. In structure-based virtual screening, the scoring function is critical to identifying the correct docking pose and accurately predicting the binding affinities of compounds. However, the performance of existing scoring functions has been shown to be uneven for different targets, and some important drug targets have proven especially challenging. In these targets, scoring functions cannot accurately identify the native or near-native binding pose of the ligand from among decoy poses, which affects both the accuracy of the binding affinity prediction and the ability of virtual screening to identify true binders in chemical libraries. Here, we present an approach to discriminating native poses from decoys in difficult targets for which several scoring functions failed to correctly identify the native pose. Our approach employs Discrete Molecular Dynamics simulations to incorporate protein-ligand dynamics and the entropic effects of binding. We analyze a collection of poses generated by docking and find that the residence time of the ligand in the native and nativelike binding poses is distinctly longer than that in decoy poses. This finding suggests that molecular simulations offer a unique approach to distinguishing the native (or nativelike) binding pose from decoy poses that cannot be distinguished using scoring functions that evaluate static structures. The success of our method emphasizes the importance of protein-ligand dynamics in the accurate determination of the binding pose, an aspect that is not addressed in typical docking and scoring protocols. PMID:22225808

  12. Multiscale Analysis of Structurally-Graded Microstructures Using Molecular Dynamics, Discrete Dislocation Dynamics and Continuum Crystal Plasticity

    NASA Technical Reports Server (NTRS)

    Saether, Erik; Hochhalter, Jacob D.; Glaessgen, Edward H.; Mishin, Yuri

    2014-01-01

    A multiscale modeling methodology is developed for structurally-graded material microstructures. Molecular dynamic (MD) simulations are performed at the nanoscale to determine fundamental failure mechanisms and quantify material constitutive parameters. These parameters are used to calibrate material processes at the mesoscale using discrete dislocation dynamics (DD). Different grain boundary interactions with dislocations are analyzed using DD to predict grain-size dependent stress-strain behavior. These relationships are mapped into crystal plasticity (CP) parameters to develop a computationally efficient finite element-based DD/CP model for continuum-level simulations and complete the multiscale analysis by predicting the behavior of macroscopic physical specimens. The present analysis is focused on simulating the behavior of a graded microstructure in which grain sizes are on the order of nanometers in the exterior region and transition to larger, multi-micron size in the interior domain. This microstructural configuration has been shown to offer improved mechanical properties over homogeneous coarse-grained materials by increasing yield stress while maintaining ductility. Various mesoscopic polycrystal models of structurally-graded microstructures are generated, analyzed and used as a benchmark for comparison between multiscale DD/CP model and DD predictions. A final series of simulations utilize the DD/CP analysis method exclusively to study macroscopic models that cannot be analyzed by MD or DD methods alone due to the model size.

  13. Sensor Web Dynamic Measurement Techniques and Adaptive Observing Strategies

    NASA Technical Reports Server (NTRS)

    Talabac, Stephen J.

    2004-01-01

    Sensor Web observing systems may have the potential to significantly improve our ability to monitor, understand, and predict the evolution of rapidly evolving, transient, or variable environmental features and events. This improvement will come about by integrating novel data collection techniques, new or improved instruments, emerging communications technologies and protocols, sensor mark-up languages, and interoperable planning and scheduling systems. In contrast to today's observing systems, "event-driven" sensor webs will synthesize real- or near-real time measurements and information from other platforms and then react by reconfiguring the platforms and instruments to invoke new measurement modes and adaptive observation strategies. Similarly, "model-driven" sensor webs will utilize environmental prediction models to initiate targeted sensor measurements or to use a new observing strategy. The sensor web concept contrasts with today's data collection techniques and observing system operations concepts where independent measurements are made by remote sensing and in situ platforms that do not share, and therefore cannot act upon, potentially useful complementary sensor measurement data and platform state information. This presentation describes NASA's view of event-driven and model-driven Sensor Webs and highlights several research and development activities at the Goddard Space Flight Center.

  14. Using Web Services and XML Harvesting to Achieve a Dynamic Web Site. Computers in Small Libraries

    ERIC Educational Resources Information Center

    Roberts, Gary

    2005-01-01

    Exploiting and contextualizing free information is a natural part of library culture. In this column, Gary Roberts, the information systems and reference librarian at Herrick Library, Alfred University in Alfred, NY, describes how to use XML content on a Web site to link to hundreds of free and useful resources. He gives a general overview of the…

  15. Food web dynamics in a seasonally varying wetland

    USGS Publications Warehouse

    DeAngelis, D.L.; Trexler, J.C.; Donalson, D.D.

    2008-01-01

    A spatially explicit model is developed to simulate the small fish community and its underlying food web, in the freshwater marshes of the Everglades. The community is simplified to a few small fish species feeding on periphyton and invertebrates. Other compartments are detritus, crayfish, and a piscivorous fish species. This unit food web model is applied to each of the 10,000 spatial cells on a 100 x 100 pixel landscape. Seasonal variation in water level is assumed and rules are assigned for fish movement in response to rising and falling water levels, which can cause many spatial cells to alternate between flooded and dry conditions. It is shown that temporal variations of water level on a spatially heterogeneous landscape can maintain at least three competing fish species. In addition, these environmental factors can strongly affect the temporal variation of the food web caused by top-down control from the piscivorous fish.

  16. Principles of Discrete Time Mechanics

    NASA Astrophysics Data System (ADS)

    Jaroszkiewicz, George

    2014-04-01

    1. Introduction; 2. The physics of discreteness; 3. The road to calculus; 4. Temporal discretization; 5. Discrete time dynamics architecture; 6. Some models; 7. Classical cellular automata; 8. The action sum; 9. Worked examples; 10. Lee's approach to discrete time mechanics; 11. Elliptic billiards; 12. The construction of system functions; 13. The classical discrete time oscillator; 14. Type 2 temporal discretization; 15. Intermission; 16. Discrete time quantum mechanics; 17. The quantized discrete time oscillator; 18. Path integrals; 19. Quantum encoding; 20. Discrete time classical field equations; 21. The discrete time Schrodinger equation; 22. The discrete time Klein-Gordon equation; 23. The discrete time Dirac equation; 24. Discrete time Maxwell's equations; 25. The discrete time Skyrme model; 26. Discrete time quantum field theory; 27. Interacting discrete time scalar fields; 28. Space, time and gravitation; 29. Causality and observation; 30. Concluding remarks; Appendix A. Coherent states; Appendix B. The time-dependent oscillator; Appendix C. Quaternions; Appendix D. Quantum registers; References; Index.

  17. Dynamical and statistical behavior of discrete combustion waves: a theoretical and numerical study.

    PubMed

    Bharath, Naine Tarun; Rashkovskiy, Sergey A; Tewari, Surya P; Gundawar, Manoj Kumar

    2013-04-01

    We present a detailed theoretical and numerical study of combustion waves in a discrete one-dimensional disordered system. The distances between neighboring reaction cells were modeled with a gamma distribution. The results show that the random structure of the microheterogeneous system plays a crucial role in the dynamical and statistical behavior of the system. This is a consequence of the nonlinear interaction of the random structure of the system with the thermal wave. An analysis of the experimental data on the combustion of a gasless system (Ti + xSi) and a wide range of thermite systems was performed in view of the developed model. We have shown that the burning rate of the powder system sensitively depends on its internal structure. The present model allows for reproducing theoretically the experimental data for a wide range of pyrotechnic mixtures. We show that Arrhenius' macrokinetics at combustion of disperse systems can take place even in the absence of Arrhenius' microkinetics; it can have a purely thermal nature and be related to their heterogeneity and to the existence of threshold temperature. It is also observed that the combustion of disperse systems always occurs in the microheterogeneous mode according to the relay-race mechanism. PMID:23679470

  18. Dynamical and statistical behavior of discrete combustion waves: A theoretical and numerical study

    NASA Astrophysics Data System (ADS)

    Bharath, Naine Tarun; Rashkovskiy, Sergey A.; Tewari, Surya P.; Gundawar, Manoj Kumar

    2013-04-01

    We present a detailed theoretical and numerical study of combustion waves in a discrete one-dimensional disordered system. The distances between neighboring reaction cells were modeled with a gamma distribution. The results show that the random structure of the microheterogeneous system plays a crucial role in the dynamical and statistical behavior of the system. This is a consequence of the nonlinear interaction of the random structure of the system with the thermal wave. An analysis of the experimental data on the combustion of a gasless system (Ti + xSi) and a wide range of thermite systems was performed in view of the developed model. We have shown that the burning rate of the powder system sensitively depends on its internal structure. The present model allows for reproducing theoretically the experimental data for a wide range of pyrotechnic mixtures. We show that Arrhenius’ macrokinetics at combustion of disperse systems can take place even in the absence of Arrhenius’ microkinetics; it can have a purely thermal nature and be related to their heterogeneity and to the existence of threshold temperature. It is also observed that the combustion of disperse systems always occurs in the microheterogeneous mode according to the relay-race mechanism.

  19. Finite-approximation-error-based discrete-time iterative adaptive dynamic programming.

    PubMed

    Wei, Qinglai; Wang, Fei-Yue; Liu, Derong; Yang, Xiong

    2014-12-01

    In this paper, a new iterative adaptive dynamic programming (ADP) algorithm is developed to solve optimal control problems for infinite horizon discrete-time nonlinear systems with finite approximation errors. First, a new generalized value iteration algorithm of ADP is developed to make the iterative performance index function converge to the solution of the Hamilton-Jacobi-Bellman equation. The generalized value iteration algorithm permits an arbitrary positive semi-definite function to initialize it, which overcomes the disadvantage of traditional value iteration algorithms. When the iterative control law and iterative performance index function in each iteration cannot accurately be obtained, for the first time a new "design method of the convergence criteria" for the finite-approximation-error-based generalized value iteration algorithm is established. A suitable approximation error can be designed adaptively to make the iterative performance index function converge to a finite neighborhood of the optimal performance index function. Neural networks are used to implement the iterative ADP algorithm. Finally, two simulation examples are given to illustrate the performance of the developed method. PMID:25265640

  20. Investigation on Two-phase Flow Dynamics with Discrete Bubble Model

    NASA Astrophysics Data System (ADS)

    Ami, Takeyuki; Umekawa, Hisashi; Ozawa, Mamoru; Shoji, Masahiro

    Conventional modeling including drift-flux model and two-fluid model is based on “continuous flow hypothesis”, being constructed by time-averaging, and thus both phases are defined in every spatio-temporal space. This makes it possible to apply to a variety of two-phase flow dynamics, while the intrinsic void fraction fluctuations, typically observed in slug and churn flows, are hardly simulated. In order to break through such a problem caused by time-averaging, discrete bubble model based on one-dimensional mass conservation equation, i.e. void propagation equation, has been developed. This model takes into account, as momentum effects, the wake effect induced by preceding bubbles, the local pressure fluctuation and the compressibility of gas phase together with the phase re-distribution due to geometrical constrains. Thus obtained spatio-temporal fluctuation characteristics of void fraction well simulated inherent two-phase behavior not only in a steady flow but also in an oscillatory flow.

  1. Prostate segmentation algorithm using dyadic wavelet transform and discrete dynamic contour

    NASA Astrophysics Data System (ADS)

    Chiu, Bernard; Freeman, George H.; Salama, M. M. A.; Fenster, Aaron

    2004-11-01

    Knowing the location and the volume of the prostate is important for ultrasound-guided prostate brachytherapy, a commonly used prostate cancer treatment method. The prostate boundary must be segmented before a dose plan can be obtained. However, manual segmentation is arduous and time consuming. This paper introduces a semi-automatic segmentation algorithm based on the dyadic wavelet transform (DWT) and the discrete dynamic contour (DDC). A spline interpolation method is used to determine the initial contour based on four user-defined initial points. The DDC model then refines the initial contour based on the approximate coefficients and the wavelet coefficients generated using the DWT. The DDC model is executed under two settings. The coefficients used in these two settings are derived using smoothing functions with different sizes. A selection rule is used to choose the best contour based on the contours produced in these two settings. The accuracy of the final contour produced by the proposed algorithm is evaluated by comparing it with the manual contour outlined by an expert observer. A total of 114 2D TRUS images taken for six different patients scheduled for brachytherapy were segmented using the proposed algorithm. The average difference between the contour segmented using the proposed algorithm and the manually outlined contour is less than 3 pixels.

  2. Prostate segmentation algorithm using dyadic wavelet transform and discrete dynamic contour.

    PubMed

    Chiu, Bernard; Freeman, George H; Salama, M M A; Fenster, Aaron

    2004-11-01

    Knowing the location and the volume of the prostate is important for ultrasound-guided prostate brachytherapy, a commonly used prostate cancer treatment method. The prostate boundary must be segmented before a dose plan can be obtained. However, manual segmentation is arduous and time consuming. This paper introduces a semi-automatic segmentation algorithm based on the dyadic wavelet transform (DWT) and the discrete dynamic contour (DDC). A spline interpolation method is used to determine the initial contour based on four user-defined initial points. The DDC model then refines the initial contour based on the approximate coefficients and the wavelet coefficients generated using the DWT. The DDC model is executed under two settings. The coefficients used in these two settings are derived using smoothing functions with different sizes. A selection rule is used to choose the best contour based on the contours produced in these two settings. The accuracy of the final contour produced by the proposed algorithm is evaluated by comparing it with the manual contour outlined by an expert observer. A total of 114 2D TRUS images taken for six different patients scheduled for brachytherapy were segmented using the proposed algorithm. The average difference between the contour segmented using the proposed algorithm and the manually outlined contour is less than 3 pixels. PMID:15584529

  3. A FFT-based formulation for efficient mechanical fields computation in isotropic and anisotropic periodic discrete dislocation dynamics

    NASA Astrophysics Data System (ADS)

    Bertin, N.; Upadhyay, M. V.; Pradalier, C.; Capolungo, L.

    2015-09-01

    In this paper, we propose a novel full-field approach based on the fast Fourier transform (FFT) technique to compute mechanical fields in periodic discrete dislocation dynamics (DDD) simulations for anisotropic materials: the DDD-FFT approach. By coupling the FFT-based approach to the discrete continuous model, the present approach benefits from the high computational efficiency of the FFT algorithm, while allowing for a discrete representation of dislocation lines. It is demonstrated that the computational time associated with the new DDD-FFT approach is significantly lower than that of current DDD approaches when large number of dislocation segments are involved for isotropic and anisotropic elasticity, respectively. Furthermore, for fine Fourier grids, the treatment of anisotropic elasticity comes at a similar computational cost to that of isotropic simulation. Thus, the proposed approach paves the way towards achieving scale transition from DDD to mesoscale plasticity, especially due to the method’s ability to incorporate inhomogeneous elasticity.

  4. Physiological modules for generating discrete and rhythmic movements: action identification by a dynamic recurrent neural network

    PubMed Central

    Bengoetxea, Ana; Leurs, Françoise; Hoellinger, Thomas; Cebolla, Ana M.; Dan, Bernard; McIntyre, Joseph; Cheron, Guy

    2014-01-01

    In this study we employed a dynamic recurrent neural network (DRNN) in a novel fashion to reveal characteristics of control modules underlying the generation of muscle activations when drawing figures with the outstretched arm. We asked healthy human subjects to perform four different figure-eight movements in each of two workspaces (frontal plane and sagittal plane). We then trained a DRNN to predict the movement of the wrist from information in the EMG signals from seven different muscles. We trained different instances of the same network on a single movement direction, on all four movement directions in a single movement plane, or on all eight possible movement patterns and looked at the ability of the DRNN to generalize and predict movements for trials that were not included in the training set. Within a single movement plane, a DRNN trained on one movement direction was not able to predict movements of the hand for trials in the other three directions, but a DRNN trained simultaneously on all four movement directions could generalize across movement directions within the same plane. Similarly, the DRNN was able to reproduce the kinematics of the hand for both movement planes, but only if it was trained on examples performed in each one. As we will discuss, these results indicate that there are important dynamical constraints on the mapping of EMG to hand movement that depend on both the time sequence of the movement and on the anatomical constraints of the musculoskeletal system. In a second step, we injected EMG signals constructed from different synergies derived by the PCA in order to identify the mechanical significance of each of these components. From these results, one can surmise that discrete-rhythmic movements may be constructed from three different fundamental modules, one regulating the co-activation of all muscles over the time span of the movement and two others elliciting patterns of reciprocal activation operating in orthogonal directions

  5. Using a Simulation To Teach Food Web Dynamics.

    ERIC Educational Resources Information Center

    Rueter, John G.; Perrin, Nancy A.

    1999-01-01

    Reports on research that tested the effect of using a computer simulation to teach the concept of a food web to nonbiology majors in a large introductory course. Concludes that the use of the simulation resulted in significantly better performance on an open-ended essay question for those students who used the software, particularly for average…

  6. The Spider's Web: Creativity and Survival in Dynamic Balance.

    ERIC Educational Resources Information Center

    Cohen, Bill

    2001-01-01

    The spider's web is presented as a model for Indigenous education and community transformation, grounded in Okanagan philosophy. Children are at the center and benefit from the influence of extended family and community. The model's relevance for language revitalization, cultural maintenance, and educational planning and assessment is discussed.…

  7. Discrete resonances

    NASA Astrophysics Data System (ADS)

    Vivaldi, Franco

    2015-12-01

    The concept of resonance has been instrumental to the study of Hamiltonian systems with divided phase space. One can also define such systems over discrete spaces, which have a finite or countable number of points, but in this new setting the notion of resonance must be re-considered from scratch. I review some recent developments in the area of arithmetic dynamics which outline some salient features of linear and nonlinear stable (elliptic) orbits over a discrete space, and also underline the difficulties that emerge in their analysis.

  8. Discrete resonances

    NASA Astrophysics Data System (ADS)

    Vivaldi, Franco

    The concept of resonance has been instrumental to the study of Hamiltonian systems with divided phase space. One can also define such systems over discrete spaces, which have a finite or countable number of points, but in this new setting the notion of resonance must be re-considered from scratch. I review some recent developments in the area of arithmetic dynamics which outline some salient features of linear and nonlinear stable (elliptic) orbits over a discrete space, and also underline the difficulties that emerge in their analysis.

  9. There must be a better way! Managing a corporate web site dynamically from a database

    SciTech Connect

    j.z. cohen

    1998-10-21

    This document is a set of slides available from http://www1.y12.org/lmes_sti/html/ycsdinf-98-8/index.htm that describes limitations of static web pages for conveying information, a plan for overcoming these limitations by generating web pages dynamically from a database, expected advantages and disadvantages of this method, design for a system using the method, and future plans.

  10. A Web Interface for the Quantification of Microtubule Dynamics

    PubMed Central

    Kong, Koon Yin; Marcus, Adam I.; Giaanakakou, Paraskevi; Wang, May D.

    2016-01-01

    We propose a web interface that allows researchers to quantify and analyze microtubule confocal images online. Most analyses of microtubule confocal images are performed manually using very simple software or tools. Analysis results are stored locally within each collaborator with different styles and formats. This has limited the sharing of data and results when collaborating among different research parties. A web interface provides a simple way for users to process data online. It also allows easy sharing of both data and results among different participating groups. Analysis workflow of the interface is made similar to existing manual protocols. We demonstrate the integration of image processing algorithm in the current workflow to aid the analysis. Our design also allows integration of novel automated analysis algorithms and modules to re-evaluate existing data. This interface can provide a validation platform for new automated algorithm and allow collaboration on microtubule image analysis from different locations.

  11. Regulating wave front dynamics from the strongly discrete to the continuum limit in magnetically driven colloidal systems

    PubMed Central

    Martinez-Pedrero, Fernando; Tierno, Pietro; Johansen, Tom H.; Straube, Arthur V.

    2016-01-01

    The emergence of wave fronts in dissipative driven systems is a fascinating phenomenon which can be found in a broad range of physical and biological disciplines. Here we report the direct experimental observation of discrete fronts propagating along chains of paramagnetic colloidal particles, the latter propelled above a traveling wave potential generated by a structured magnetic substrate. We develop a rigorously reduced theoretical framework and describe the dynamics of the system in terms of a generalized one-dimensional dissipative Frenkel-Kontorova model. The front dynamics is explored in a wide range of field parameters close to and far from depinning, where the discrete and continuum limits apply. We show how symmetry breaking and finite size of chains are used to control the direction of front propagation, a universal feature relevant to different systems and important for real applications. PMID:26837286

  12. Minimax approach problem with incomplete information for the two-level hierarchical discrete-time dynamical system

    SciTech Connect

    Shorikov, A. F.

    2014-11-18

    We consider a discrete-time dynamical system consisting of three controllable objects. The motions of all objects are given by the corresponding vector linear or convex discrete-time recurrent vector relations, and control system for its has two levels: basic (first or I level) that is dominating and subordinate level (second or II level) and both have different criterions of functioning and united a priori by determined informational and control connections defined in advance. For the dynamical system in question, we propose a mathematical formalization in the form of solving a multistep problem of two-level hierarchical minimax program control over the terminal approach process with incomplete information and give a general scheme for its solution.

  13. Regulating wave front dynamics from the strongly discrete to the continuum limit in magnetically driven colloidal systems.

    PubMed

    Martinez-Pedrero, Fernando; Tierno, Pietro; Johansen, Tom H; Straube, Arthur V

    2016-01-01

    The emergence of wave fronts in dissipative driven systems is a fascinating phenomenon which can be found in a broad range of physical and biological disciplines. Here we report the direct experimental observation of discrete fronts propagating along chains of paramagnetic colloidal particles, the latter propelled above a traveling wave potential generated by a structured magnetic substrate. We develop a rigorously reduced theoretical framework and describe the dynamics of the system in terms of a generalized one-dimensional dissipative Frenkel-Kontorova model. The front dynamics is explored in a wide range of field parameters close to and far from depinning, where the discrete and continuum limits apply. We show how symmetry breaking and finite size of chains are used to control the direction of front propagation, a universal feature relevant to different systems and important for real applications. PMID:26837286

  14. Regulating wave front dynamics from the strongly discrete to the continuum limit in magnetically driven colloidal systems

    NASA Astrophysics Data System (ADS)

    Martinez-Pedrero, Fernando; Tierno, Pietro; Johansen, Tom H.; Straube, Arthur V.

    2016-02-01

    The emergence of wave fronts in dissipative driven systems is a fascinating phenomenon which can be found in a broad range of physical and biological disciplines. Here we report the direct experimental observation of discrete fronts propagating along chains of paramagnetic colloidal particles, the latter propelled above a traveling wave potential generated by a structured magnetic substrate. We develop a rigorously reduced theoretical framework and describe the dynamics of the system in terms of a generalized one-dimensional dissipative Frenkel-Kontorova model. The front dynamics is explored in a wide range of field parameters close to and far from depinning, where the discrete and continuum limits apply. We show how symmetry breaking and finite size of chains are used to control the direction of front propagation, a universal feature relevant to different systems and important for real applications.

  15. A discrete chemo-dynamical model of the dwarf spheroidal galaxy Sculptor: mass profile, velocity anisotropy and internal rotation

    NASA Astrophysics Data System (ADS)

    Zhu, Ling; van de Ven, Glenn; Watkins, Laura L.; Posti, Lorenzo

    2016-08-01

    We present a new discrete chemo-dynamical axisymmetric modeling technique, which we apply to the dwarf spheroidal galaxy Sculptor. The major improvement over previous Jeans models is that realistic chemical distributions are included directly in the dynamical modelling of the discrete data. This avoids loss of information due to spatial binning and eliminates the need for hard cuts to remove contaminants and to separate stars based on their chemical properties. Using a combined likelihood in position, metallicity and kinematics, we find that our models naturally separate Sculptor stars into a metal-rich and a metal-poor population. Allowing for non-spherical symmetry, our approach provides a central slope of the dark matter density of γ = 0.5 ± 0.3. The metal-rich population is nearly isotropic (with β _r^{red} = 0.0± 0.1) while the metal-poor population is tangentially anisotropic (with β _r^{blue} = -0.2± 0.1) around the half light radius of 0.26 kpc. A weak internal rotation of the metal-rich population is revealed with vmax/σ0 = 0.15 ± 0.15. We run tests using mock data to show that a discrete dataset with ˜6000 stars is required to distinguish between a core (γ = 0) and cusp (γ = 1), and to constrain the possible internal rotation to better than 1 σ confidence with our model. We conclude that our discrete chemo-dynamical modelling technique provides a flexible and powerful tool to robustly constrain the internal dynamics of multiple populations, and the total mass distribution in a stellar system.

  16. A discrete momentum-conserving explicit algorithm for rigid body dynamics analysis

    NASA Technical Reports Server (NTRS)

    Park, K. C.; Chiou, J. C.

    1993-01-01

    A discrete momentum-conserving explicit time integration is presented. The accurate feature and simplicity of the present algorithm are realized by a mid-point implicit formula for integrating the Euler parameters and a second-order discrete momentum-conserving form of the central difference algorithm, respectively. The accuracy and robustness of the algorithm is demonstrated by example problems which exhibit large overall rigid motions under holonomic constraints.

  17. Stabilization of chaotic and non-permanent food-web dynamics

    NASA Astrophysics Data System (ADS)

    Williams, R. J.; Martinez, N. D.

    2004-03-01

    Several decades of dynamical analyses of food-web networks[CITE] have led to important insights into the effects of complexity, omnivory and interaction strength on food-web stability[CITE]. Several recent insights[CITE] are based on nonlinear bioenergetic consumer-resource models[CITE] that display chaotic behavior in three species food chains[CITE] which can be stabilized by omnivory[CITE] and weak interaction of a fourth species[CITE]. We slightly relax feeding on low-density prey in these models by modifying standard food-web interactions known as “typeII” functional responses[CITE]. This change drastically alters the dynamics of realistic systems containing up to ten species. Our modification stabilizes chaotic dynamics in three species systems and reduces or eliminates extinctions and non-persistent chaos[CITE] in ten species systems. This increased stability allows analysis of systems with greater biodiversity than in earlier work and suggests that dynamic stability is not as severe a constraint on the structure of large food webs as previously thought. The sensitivity of dynamical models to small changes in the predator-prey functional response well within the range of what is empirically observed suggests that functional response is a crucial aspect of species interactions that must be more precisely addressed in empirical studies.

  18. Time Step Rescaling Recovers Continuous-Time Dynamical Properties for Discrete-Time Langevin Integration of Nonequilibrium Systems

    PubMed Central

    2015-01-01

    When simulating molecular systems using deterministic equations of motion (e.g., Newtonian dynamics), such equations are generally numerically integrated according to a well-developed set of algorithms that share commonly agreed-upon desirable properties. However, for stochastic equations of motion (e.g., Langevin dynamics), there is still broad disagreement over which integration algorithms are most appropriate. While multiple desiderata have been proposed throughout the literature, consensus on which criteria are important is absent, and no published integration scheme satisfies all desiderata simultaneously. Additional nontrivial complications stem from simulating systems driven out of equilibrium using existing stochastic integration schemes in conjunction with recently developed nonequilibrium fluctuation theorems. Here, we examine a family of discrete time integration schemes for Langevin dynamics, assessing how each member satisfies a variety of desiderata that have been enumerated in prior efforts to construct suitable Langevin integrators. We show that the incorporation of a novel time step rescaling in the deterministic updates of position and velocity can correct a number of dynamical defects in these integrators. Finally, we identify a particular splitting (related to the velocity Verlet discretization) that has essentially universally appropriate properties for the simulation of Langevin dynamics for molecular systems in equilibrium, nonequilibrium, and path sampling contexts. PMID:24555448

  19. Dynamics of the Lake Michigan food web, 1970-2000

    USGS Publications Warehouse

    Madenjian, Charles P.; Fahnenstiel, Gary L.; Johengen, Thomas H.; Nalepa, Thomas F.; Vanderploeg, Henry A.; Fleischer, Guy W.; Schneeberger, Philip J.; Benjamin, Darren M.; Smith, Emily B.; Bence, James R.; Rutherford, Edward S.; Lavis, Dennis S.; Robertson, Dale M.; Jude, David J.; Ebener, Mark P.

    2002-01-01

    Herein, we document changes in the Lake Michigan food web between 1970 and 2000 and identify the factors responsible for these changes. Control of sea lamprey (Petromyzon marinus) and alewife (Alosa pseudoharengus) populations in Lake Michigan, beginning in the 1950s and 1960s, had profound effects on the food web. Recoveries of lake whitefish (Coregonus clupeaformis) and burbot (Lota lota) populations, as well as the buildup of salmonine populations, were attributable, at least in part, to sea lamprey control. Based on our analyses, predation by salmonines was primarily responsible for the reduction in alewife abundance during the 1970s and early 1980s. In turn, the decrease in alewife abundance likely contributed to recoveries of deepwater sculpin (Myoxocephalus thompsoni), yellow perch (Perca flavescens), and burbot populations during the 1970s and 1980s. Decrease in the abundance of all three dominant benthic macroinvertebrate groups, including Diporeia, oligochaetes, and sphaeriids, during the 1980s in nearshore waters (50 m deep) of Lake Michigan, was attributable to a decrease in primary production linked to a decline in phosphorus loadings. Continued decrease in Diporeia abundance during the 1990s was associated with the zebra mussel (Dreissena polymorpha) invasion, but specific mechanisms for zebra mussels affecting Diporeia abundance remain unidentified.

  20. Modeling of Interior Ballistic Gas-Solid Flow Using a Coupled Computational Fluid Dynamics-Discrete Element Method.

    PubMed

    Cheng, Cheng; Zhang, Xiaobing

    2013-05-01

    In conventional models for two-phase reactive flow of interior ballistic, the dynamic collision phenomenon of particles is neglected or empirically simplified. However, the particle collision between particles may play an important role in dilute two-phase flow because the distribution of particles is extremely nonuniform. The collision force may be one of the key factors to influence the particle movement. This paper presents the CFD-DEM approach for simulation of interior ballistic two-phase flow considering the dynamic collision process. The gas phase is treated as a Eulerian continuum and described by a computational fluid dynamic method (CFD). The solid phase is modeled by discrete element method (DEM) using a soft sphere approach for the particle collision dynamic. The model takes into account grain combustion, particle-particle collisions, particle-wall collisions, interphase drag and heat transfer between gas and solid phases. The continuous gas phase equations are discretized in finite volume form and solved by the AUSM+-up scheme with the higher order accurate reconstruction method. Translational and rotational motions of discrete particles are solved by explicit time integrations. The direct mapping contact detection algorithm is used. The multigrid method is applied in the void fraction calculation, the contact detection procedure, and CFD solving procedure. Several verification tests demonstrate the accuracy and reliability of this approach. The simulation of an experimental igniter device in open air shows good agreement between the model and experimental measurements. This paper has implications for improving the ability to capture the complex physics phenomena of two-phase flow during the interior ballistic cycle and to predict dynamic collision phenomena at the individual particle scale. PMID:24891728

  1. Separate representations of dynamics in rhythmic and discrete movements: evidence from motor learning.

    PubMed

    Howard, Ian S; Ingram, James N; Wolpert, Daniel M

    2011-04-01

    Rhythmic and discrete arm movements occur ubiquitously in everyday life, and there is a debate as to whether these two classes of movements arise from the same or different underlying neural mechanisms. Here we examine interference in a motor-learning paradigm to test whether rhythmic and discrete movements employ at least partially separate neural representations. Subjects were required to make circular movements of their right hand while they were exposed to a velocity-dependent force field that perturbed the circularity of the movement path. The direction of the force-field perturbation reversed at the end of each block of 20 revolutions. When subjects made only rhythmic or only discrete circular movements, interference was observed when switching between the two opposing force fields. However, when subjects alternated between blocks of rhythmic and discrete movements, such that each was uniquely associated with one of the perturbation directions, interference was significantly reduced. Only in this case did subjects learn to corepresent the two opposing perturbations, suggesting that different neural resources were employed for the two movement types. Our results provide further evidence that rhythmic and discrete movements employ at least partially separate control mechanisms in the motor system. PMID:21273324

  2. Systematic generation of nonlinear discretized dynamic equilibrium equations of spinning cantilevers

    NASA Technical Reports Server (NTRS)

    El-Essawi, M.; Utku, S.; Salama, M.

    1982-01-01

    General nonlinear discretized governing equations of motion of spinning elastic solids and structures are adjusted for the case of a spinning cantilever with initial geometric imperfections. Consideration is given to second degree nonlinearities in the strain-displacement and velocity-displacement relationships. Parameters of the discretization are developed to include the type and number of the coordinate functions used in the admissible trial solution in order to unify the discretization approaches associated with stationarity principles. The coordinate functions comprise both sets of continuous and piecewise continuous functions employed in the Rayleigh-Ritz and the finite element methods, respectively. Coefficient matrices are provided which contain the energy density expressions and which are adaptable to computer programming.

  3. An analytical treatment of discretely varying constraints and inertial properties in multi-body dynamics

    NASA Technical Reports Server (NTRS)

    Housner, J. M.; Mcgowan, P. E.

    1986-01-01

    A computerized procedure is presented for calculating instantaneous velocity changes due to discrete imposition of constraints, impact or discrete inertial changes. Such discrete changes are impulsive in nature, involve wave propagation and therefore usually require detailed modeling for accurate prediction. It is demonstrated that when modeling is coarse, physically unrealistic results can be produced. The present procedure, which concentrates on finite element analysis, reduces the need for detailed modeling by assuming that only those velocities in the neighborhood of grid points involved in the constraint or those rigidly connected to grid points involved in the constraint need be considered in calculating velocity changes. The procedure utilizes Newton's second law and as such conserves momentum where valid. Sample problems are provided.

  4. From a discrete to a continuum model of cell dynamics in one dimension.

    PubMed

    Murray, Philip J; Edwards, Carina M; Tindall, Marcus J; Maini, Philip K

    2009-09-01

    Multiscale modeling is emerging as one of the key challenges in mathematical biology. However, the recent rapid increase in the number of modeling methodologies being used to describe cell populations has raised a number of interesting questions. For example, at the cellular scale, how can the appropriate discrete cell-level model be identified in a given context? Additionally, how can the many phenomenological assumptions used in the derivation of models at the continuum scale be related to individual cell behavior? In order to begin to address such questions, we consider a discrete one-dimensional cell-based model in which cells are assumed to interact via linear springs. From the discrete equations of motion, the continuous Rouse [P. E. Rouse, J. Chem. Phys. 21, 1272 (1953)] model is obtained. This formalism readily allows the definition of a cell number density for which a nonlinear "fast" diffusion equation is derived. Excellent agreement is demonstrated between the continuum and discrete models. Subsequently, via the incorporation of cell division, we demonstrate that the derived nonlinear diffusion model is robust to the inclusion of more realistic biological detail. In the limit of stiff springs, where cells can be considered to be incompressible, we show that cell velocity can be directly related to cell production. This assumption is frequently made in the literature but our derivation places limits on its validity. Finally, the model is compared with a model of a similar form recently derived for a different discrete cell-based model and it is shown how the different diffusion coefficients can be understood in terms of the underlying assumptions about cell behavior in the respective discrete models. PMID:19905151

  5. A linear discrete dynamic system model for temporal gene interaction and regulatory network influence in response to bioethanol conversion inhibitor HMF for ethanologenic yeast

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A linear discrete dynamic system model is constructed to represent the temporal interactions among significantly expressed genes in response to bioethanol conversion inhibitor 5-hydroxymethylfurfural for ethanologenic yeast Saccharomyces cerevisiae. This study identifies the most significant linear...

  6. Prototype of a Mobile Social Network for Education Using Dynamic Web Service

    ERIC Educational Resources Information Center

    Hoentsch, Sandra Costa Pinto; Carvalho, Felipe Oliveira; Santos, Luiz Marcus Monteiro de Almeida; Ribeiro, Admilson de Ribamar Lima

    2012-01-01

    This article presents the proposal of a social network site SocialNetLab that belongs to the Department of Computing-Federal University of Sergipe and which aims to locate and notify users of a nearby friend independently of the location technology available in the equipment through dynamic Web Service; to serve as a laboratory for research in…

  7. Sociometry: An Approach for Assessing Group Dynamics in Web-Based Courses

    ERIC Educational Resources Information Center

    Daugherty, Martha; Turner, Jeff

    2003-01-01

    Student interactivity in web-based educational environments has shown to increase academic learning and motivation (Jiang, 1998; Petraglia, 1998). However, instructors often find it difficult to assess the quality of online group dynamics without visual observations of student behaviors. The purpose of this study was to investigate the use of…

  8. Numerical investigations on flow dynamics of prismatic granular materials using the discrete element method

    NASA Astrophysics Data System (ADS)

    Hancock, W.; Weatherley, D.; Wruck, B.; Chitombo, G. P.

    2012-04-01

    The flow dynamics of granular materials is of broad interest in both the geosciences (e.g. landslides, fault zone evolution, and brecchia pipe formation) and many engineering disciplines (e.g chemical engineering, food sciences, pharmaceuticals and materials science). At the interface between natural and human-induced granular media flow, current underground mass-mining methods are trending towards the induced failure and subsequent gravitational flow of large volumes of broken rock, a method known as cave mining. Cave mining relies upon the undercutting of a large ore body, inducement of fragmentation of the rock and subsequent extraction of ore from below, via hopper-like outlets. Design of such mines currently relies upon a simplified kinematic theory of granular flow in hoppers, known as the ellipsoid theory of mass movement. This theory assumes that the zone of moving material grows as an ellipsoid above the outlet of the silo. The boundary of the movement zone is a shear band and internal to the movement zone, the granular material is assumed to have a uniformly high bulk porosity compared with surrounding stagnant regions. There is however, increasing anecdotal evidence and field measurements suggesting this theory fails to capture the full complexity of granular material flow within cave mines. Given the practical challenges obstructing direct measurement of movement both in laboratory experiments and in-situ, the Discrete Element Method (DEM [1]) is a popular alternative to investigate granular media flow. Small-scale DEM studies (c.f. [3] and references therein) have confirmed that movement within DEM silo flow models matches that predicted by ellipsoid theory, at least for mono-disperse granular material freely outflowing at a constant rate. A major draw-back of these small-scale DEM studies is that the initial bulk porosity of the simulated granular material is significantly higher than that of broken, prismatic rock. In this investigation, more

  9. Testing the Degree of Cross-Sectional and Longitudinal Dependence between Two Discrete Dynamic Processes

    ERIC Educational Resources Information Center

    Flaherty, Brian P.

    2008-01-01

    Developmental research often involves studying change across 2 or more processes or constructs simultaneously. A natural question in this work is whether change in these 2 processes is related or independent. Associative latent transition analysis (ALTA) was designed to test hypotheses about the degree to which change in 2 discrete latent…

  10. Regime shifts in marine communities: a complex systems perspective on food web dynamics

    PubMed Central

    Yletyinen, Johanna; Bodin, Örjan; Weigel, Benjamin; Nordström, Marie C.; Bonsdorff, Erik; Blenckner, Thorsten

    2016-01-01

    Species composition and habitats are changing at unprecedented rates in the world's oceans, potentially causing entire food webs to shift to structurally and functionally different regimes. Despite the severity of these regime shifts, elucidating the precise nature of their underlying processes has remained difficult. We address this challenge with a new analytic approach to detect and assess the relative strength of different driving processes in food webs. Our study draws on complexity theory, and integrates the network-centric exponential random graph modelling (ERGM) framework developed within the social sciences with community ecology. In contrast to previous research, this approach makes clear assumptions of direction of causality and accommodates a dynamic perspective on the emergence of food webs. We apply our approach to analysing food webs of the Baltic Sea before and after a previously reported regime shift. Our results show that the dominant food web processes have remained largely the same, although we detect changes in their magnitudes. The results indicate that the reported regime shift may not be a system-wide shift, but instead involve a limited number of species. Our study emphasizes the importance of community-wide analysis on marine regime shifts and introduces a novel approach to examine food webs. PMID:26888032

  11. Regime shifts in marine communities: a complex systems perspective on food web dynamics.

    PubMed

    Yletyinen, Johanna; Bodin, Örjan; Weigel, Benjamin; Nordström, Marie C; Bonsdorff, Erik; Blenckner, Thorsten

    2016-02-24

    Species composition and habitats are changing at unprecedented rates in the world's oceans, potentially causing entire food webs to shift to structurally and functionally different regimes. Despite the severity of these regime shifts, elucidating the precise nature of their underlying processes has remained difficult. We address this challenge with a new analytic approach to detect and assess the relative strength of different driving processes in food webs. Our study draws on complexity theory, and integrates the network-centric exponential random graph modelling (ERGM) framework developed within the social sciences with community ecology. In contrast to previous research, this approach makes clear assumptions of direction of causality and accommodates a dynamic perspective on the emergence of food webs. We apply our approach to analysing food webs of the Baltic Sea before and after a previously reported regime shift. Our results show that the dominant food web processes have remained largely the same, although we detect changes in their magnitudes. The results indicate that the reported regime shift may not be a system-wide shift, but instead involve a limited number of species. Our study emphasizes the importance of community-wide analysis on marine regime shifts and introduces a novel approach to examine food webs. PMID:26888032

  12. Scaling dynamics of deep orbits in a periodic stochastic web

    NASA Astrophysics Data System (ADS)

    Lowenstein, J. H.

    1991-04-01

    In a fourfold-symmetric stochastic web generated by a two-dimensional area-preserving map, those phase-space orbits that remain forever in the central part of the chaotic channels are selected by a suitable cutoff condition. By means of a horseshoe construction, these deep orbits are classified according to (i) their paths on the square lattice of hyperbolic fixed points, (ii) their transit times between successive lattice sites, and (iii) their horseshoe branch (left or ) at each lattice site. The set of initial conditions for the deep orbits can be placed on a tree that branches with infinite multiplicity at each level: level N of the tree corresponds to paths of N+1 steps on the lattice. Empirically, one finds two scaling relations, one for the level number and the other for the number of map iterations between successive saddle points. Using a transfer-matrix technique, the scaling relations are exploited to calculate the multifractal properties [Hausdorff dimension, Hausdorff measure, the f(α) curve] of the set of deep orbits, to obtain an invariant probability measure and to derive a Green function for the diffusion process on the lattice. Numerical calculations of many of these quantities are carried out for the value 0.5 of the control parameter.

  13. Earthquake-triggered Tsaoling landslide mechanics and dynamic process revealed by discrete element method

    NASA Astrophysics Data System (ADS)

    Chang, K.-J.; Chen, R.-F.; Chan, Y.-C.; Kuo, C.-Y.; Weng, C.-H.

    2012-04-01

    transported debris was about 30 - 90 m thick, covered on the preexisting debris deposit hill and around the river channel. The debris formed a dammed lake, with a maximum volume of 45 Mm3. Based on DTMs data sets, field observations, the discrete element method - PFC3D is adapts to analyze the triggering mechanism and sling dynamic process. The presence and the coupling effect from the strong ground excitation and high pore water pressure is the essential factor to triggering the landslide event. The results shows that the best fit between the deposit topography of the post-event DTM and numerical simulations, the fictional coefficient of the sliding surface is as low as 0.087. The maximum sliding speed is as high as 87.2 m/s, the result coincide with the seismic record from the nearby strong motion seismic record.

  14. The effects of host-feeding on stability of discrete-time host-parasitoid population dynamic models.

    PubMed

    Emerick, Brooks; Singh, Abhyudai

    2016-02-01

    Discrete-time models are the traditional approach for capturing population dynamics of a host-parasitoid system. Recent work has introduced a semi-discrete framework for obtaining model update functions that connect host-parasitoid population levels from year-to-year. In particular, this framework uses differential equations to describe the host-parasitoid interaction during the time of year when they come in contact, allowing specific behaviors to be mechanistically incorporated. We use the semi-discrete approach to study the effects of host-feeding, which occurs when a parasitoid consumes a potential host larva without ovipositing. We find that host-feeding by itself cannot stabilize the system, and both populations exhibit behavior similar to the Nicholson-Bailey model. However, when combined with stabilizing mechanisms such as density-dependent host mortality, host-feeding contracts the region of parameter space that allows for a stable host-parasitoid equilibrium. In contrast, when combined with a density-dependent parasitoid attack rate, host-feeding expands the non-zero equilibrium stability region. Our results show that host-feeding causes inefficiency in the parasitoid population, which yields a higher population of hosts per generation. This suggests that host-feeding may have limited long-term impact in terms of suppressing host levels for biological control applications. PMID:26686008

  15. Networked Physics Curriculum:. From Static Web to Dynamic Java

    NASA Astrophysics Data System (ADS)

    Bothun, G. D.; Kevan, S. D.; Micklavzina, S.; Mason, D.

    We describe our efforts at the University of Oregon to use Web-based Instructional Technology (IT) supplemented with interactive Java virtual experiments to change the standard pedagogy associated with large, introductory undergraduate classes in physics and astronomy. We begin by examining some of the problems associated with the standard pedagogy in these classes and how these problems motivated our development of networked courseware. Although we identify and describe five empirical positive outcomes associated with IT, we conclude that the use of HTML-based course material and assignments does not substantially alter the standard pedagogy as this medium alone is not conducive to interactive exercises. To build interactivity into our courseware, we have undertaken a vigorous effort of creating Java-based experiments which are grounded in physical reality and duplicate the kinds of experiments that are done in the physical lab. In so doing, we build experimentation into a curriculum for large lecture-based classes in which the standard pedagogy and resource constraints normally preclude lab sections. The main goal is to create a networked environment where the student can easily retrieve the notes and the demonstrations that were done in class as well as to engage in experiments that are designed to illustrate basic principles. In so doing, we hope to move to a more learner-centered environment which is driven by student inquiry. Five specific Java experiments are described here and each is accompanied by a snapshot of the experimental apparatus and controls. An appendix contains the relevant URLs of the experiments, courseware, and animation described herein.

  16. Biological vs. physical mixing effects on benthic food web dynamics.

    PubMed

    Braeckman, Ulrike; Provoost, Pieter; Moens, Tom; Soetaert, Karline; Middelburg, Jack J; Vincx, Magda; Vanaverbeke, Jan

    2011-01-01

    Biological particle mixing (bioturbation) and solute transfer (bio-irrigation) contribute extensively to ecosystem functioning in sediments where physical mixing is low. Macrobenthos transports oxygen and organic matter deeper into the sediment, thereby likely providing favourable niches to lower trophic levels (i.e., smaller benthic animals such as meiofauna and bacteria) and thus stimulating mineralisation. Whether this biological transport facilitates fresh organic matter assimilation by the metazoan lower part of the food web through niche establishment (i.e., ecosystem engineering) or rather deprives them from food sources, is so far unclear. We investigated the effects of the ecosystem engineers Lanice conchilega (bio-irrigator) and Abra alba (bioturbator) compared to abiotic physical mixing events on survival and food uptake of nematodes after a simulated phytoplankton bloom. The (13)C labelled diatom Skeletonema costatum was added to 4 treatments: (1) microcosms containing the bioturbator, (2) microcosms containing the bio-irrigator, (3) control microcosms and (4) microcosms with abiotic manual surface mixing. Nematode survival and subsurface peaks in nematode density profiles were most pronounced in the bio-irrigator treatment. However, nematode specific uptake (Δδ(13)C) of the added diatoms was highest in the physical mixing treatment, where macrobenthos was absent and the diatom (13)C was homogenised. Overall, nematodes fed preferentially on bulk sedimentary organic material rather than the added diatoms. The total C budget (µg C m(-2)), which included TO(13)C remaining in the sediment, respiration, nematode and macrobenthic uptake, highlighted the limited assimilation by the metazoan benthos and the major role of bacterial respiration. In summary, bioturbation and especially bio-irrigation facilitated the lower trophic levels mainly over the long-term through niche establishment. Since the freshly added diatoms represented only a limited food source

  17. Discrete simulation of the dynamics of spread of extreme opinions in a society

    NASA Astrophysics Data System (ADS)

    Stauffer, Dietrich; Sahimi, Muhammad

    2006-05-01

    We propose a discrete model for how opinions about a given “extreme” subject, about which various groups of a population have different degrees of enthusiasm for or susceptibility to, such as fanaticism, extreme social and political positions, and terrorism, may spread. The model, in a certain limit, is the discrete analogue of a deterministic continuum model suggested by others. We carry out extensive computer simulation of the model by utilizing it on lattices with infinite- or short-range interactions, and on symmetric and hierarchical (or directed) Barabási-Albert scale-free networks. Several interesting features of the model are demonstrated, and comparison is made with the deterministic continuum model.

  18. Analysis and design of numerical schemes for gas dynamics. 2: Artificial diffusion and discrete shock structure

    NASA Technical Reports Server (NTRS)

    Jameson, Antony

    1994-01-01

    The effect of artificial diffusion on discrete shock structures is examined for a family of schemes which includes scalar diffusion, convective upwind and split pressure (CUSP) schemes, and upwind schemes with characteristics splitting. The analysis leads to conditions on the diffusive flux such that stationary discrete shocks can contain a single interior point. The simplest formulation which meets these conditions is a CUSP scheme in which the coefficients of the pressure differences is fully determined by the coefficient of convective diffusion. It is also shown how both the characteristic and CUSP schemes can be modified to preserve constant stagnation enthalpy in steady flow, leading to four variants, the E and H-characteristic schemes, and the E and H-CUSP schemes. Numerical results are presented which confirm the properties of these schemes.

  19. Nutrients, food web and tropho-dynamic processes

    NASA Astrophysics Data System (ADS)

    Wilson, James G.; Devlin, Michelle

    2013-12-01

    This volume presents the papers on the theme of nutrients and tropho-dynamic processes from the ECSA50 Venice 2012: Today's Science for Tomorrow's Management meeting. They illustrate how the application of cutting-edge techniques such as stable isotope analysis (SIA) together with improved analytical and synthetic procedures allow a much finer degree of definition in understanding system function. To this may be added increasingly sophisticated models, underpinned by ever more precise and detailed data, through which we can predict with greater and greater certainty the consequences of the changes Drivers, Pressures, States and Impacts on the system to shape the management Responses.

  20. Stochastic dynamic programming for reservoir optimal control: Dense discretization and inflow correlation assumption made possible by parallel computing

    NASA Astrophysics Data System (ADS)

    Piccardi, Carlo; Soncini-Sessa, Rodolfo

    1991-05-01

    The solution via dynamic programming (DP) of a reservoir optimal control problem is often computationally prohibitive when the proper description of the inflow process leads to a system model having several state variables and/or when a sufficiently dense state discretization is required to achieve numerical accuracy. Thus, to simplify, the inflow correlation is usually neglected and/or a coarse state discretization is adopted. However, these simplifications may significantly affect the reliability of the solution of the optimization problem. Nowadays, the availability of very powerful computers based on innovative architectures (vector and parallel machines), even in the domain of personal computers (transputer architectures), stimulates the reformulation of the standard dynamic programming algorithm in a form able to exploit these new machine architectures. The reformulated DP algorithm and new machines enable faster and less costly solution of optimization problems involving a system model having two state variables (storage and previous period inflow, then taking into account the inflow correlation) and a number of states (of the order of 104) such as to guarantee a high numerical accuracy.

  1. Analytical study of dynamics of matter-wave solitons in lossless nonlinear discrete bi-inductance transmission lines

    NASA Astrophysics Data System (ADS)

    Kengne, E.; Lakhssassi, A.

    2015-03-01

    We consider a lossless one-dimensional nonlinear discrete bi-inductance electrical transmission line made of N identical unit cells. When lattice effects are considered, we use the reductive perturbation method in the semidiscrete limit to show that the dynamics of modulated waves can be modeled by the classical nonlinear Schrödinger (CNLS) equation, which describes the modulational instability and the propagation of bright and dark solitons on a continuous-wave background. Our theoretical analysis based on the CNLS equation predicts either two or four frequency regions with different behavior concerning the modulational instability of a plane wave. With the help of the analytical solutions of the CNLS equation, we investigate analytically the effects of the linear capacitance CS on the dynamics of matter-wave solitons in the network. Our results reveal that the linear parameter CS can be used to manipulate the motion of bright, dark, and kink soliton in the network.

  2. Analytical study of dynamics of matter-wave solitons in lossless nonlinear discrete bi-inductance transmission lines.

    PubMed

    Kengne, E; Lakhssassi, A

    2015-03-01

    We consider a lossless one-dimensional nonlinear discrete bi-inductance electrical transmission line made of N identical unit cells. When lattice effects are considered, we use the reductive perturbation method in the semidiscrete limit to show that the dynamics of modulated waves can be modeled by the classical nonlinear Schrödinger (CNLS) equation, which describes the modulational instability and the propagation of bright and dark solitons on a continuous-wave background. Our theoretical analysis based on the CNLS equation predicts either two or four frequency regions with different behavior concerning the modulational instability of a plane wave. With the help of the analytical solutions of the CNLS equation, we investigate analytically the effects of the linear capacitance CS on the dynamics of matter-wave solitons in the network. Our results reveal that the linear parameter CS can be used to manipulate the motion of bright, dark, and kink soliton in the network. PMID:25871172

  3. Avalanche dynamics of magnetic flux in a two-dimensional discrete superconductor

    SciTech Connect

    Ginzburg, S. L.; Nakin, A. V.; Savitskaya, N. E.

    2006-11-15

    The critical state of a two-dimensional discrete superconductor in an external magnetic field is studied. This state is found to be self-organized in the generalized sense, i.e., is a set of metastable states that transform to each other by means of avalanches. An avalanche is characterized by the penetration of a magnetic flux to the system. The sizes of the occurring avalanches, i.e., changes in the magnetic flux, exhibit the power-law distribution. It is also shown that the size of the avalanche occurring in the critical state and the external magnetic field causing its change are statistically independent quantities.

  4. [Molecular Dynamics of Self-assembling and Rheology of Superhelical Structure of Protofiber of Spider Web].

    PubMed

    Shaitan, K V; Orshanskiy, I A

    2015-01-01

    In this study we suggested a dynamics simulation for the formation of protofiber of spider web nanofiber. It was shown that a bundle of parallel polyalanine β-strands of sufficient length is arranged through self-assembly into a stable right-handed super helix. By numerical analysis we investigated the rheological properties and provided in nonlinear regime a generalization of the model of Singer for description of the rheological behaviour of super helix. PMID:26394464

  5. Development of a Dynamic Web Mapping Service for Vegetation Productivity Using Earth Observation and in situ Sensors in a Sensor Web Based Approach

    PubMed Central

    Kooistra, Lammert; Bergsma, Aldo; Chuma, Beatus; de Bruin, Sytze

    2009-01-01

    This paper describes the development of a sensor web based approach which combines earth observation and in situ sensor data to derive typical information offered by a dynamic web mapping service (WMS). A prototype has been developed which provides daily maps of vegetation productivity for the Netherlands with a spatial resolution of 250 m. Daily available MODIS surface reflectance products and meteorological parameters obtained through a Sensor Observation Service (SOS) were used as input for a vegetation productivity model. This paper presents the vegetation productivity model, the sensor data sources and the implementation of the automated processing facility. Finally, an evaluation is made of the opportunities and limitations of sensor web based approaches for the development of web services which combine both satellite and in situ sensor sources. PMID:22574019

  6. The multi-stream flows and the dynamics of the cosmic web

    SciTech Connect

    Shandarin, Sergei F.

    2011-05-01

    A new numerical technique to identify the cosmic web is proposed. It is based on locating multi-stream flows, i.e. the places where the velocity field is multi-valued. The method is local in Eulerian space, simple and computationally efficient. This technique uses the velocities of particles and thus takes into account the dynamical information. This is in contrast with the majority of standard methods that use the coordinates of particles only. Two quantities are computed in every mesh cell: the mean and variance of the velocity field. Ideally in the cells where the velocity is single-valued the variance must be equal to zero exactly, therefore the cells with non-zero variance are identified as multi-stream flows. The technique has been tested in the Zel'dovich approximation and in the N-body simulation of the ΛCDM model. The effect of numerical noise is discussed. The web identified by the new method has been compared with the web identified by the standard technique using only the particle coordinates. The comparison has shown overall similarity of two webs as expected, however they by no means are identical. For example, the isocontours of the corresponding fields have significantly different shapes and some density peaks of similar heights exhibit significant differences in the velocity variance and vice versa. This suggests that the density and velocity variance have a significant degree of independence. The shape of the two-dimensional pdf of density and velocity variance confirms this proposition. Thus, we conclude that the dynamical information probed by this technique introduces an additional dimension into analysis of the web.

  7. Dynamic web cache publishing for IaaS clouds using Shoal

    NASA Astrophysics Data System (ADS)

    Gable, Ian; Chester, Michael; Armstrong, Patrick; Berghaus, Frank; Charbonneau, Andre; Leavett-Brown, Colin; Paterson, Michael; Prior, Robert; Sobie, Randall; Taylor, Ryan

    2014-06-01

    We have developed a highly scalable application, called Shoal, for tracking and utilizing a distributed set of HTTP web caches. Our application uses the Squid HTTP cache. Squid servers advertise their existence to the Shoal server via AMQP messaging by running Shoal Agent. The Shoal server provides a simple REST interface that allows clients to determine their closest Squid cache. Our goal is to dynamically instantiate Squid caches on IaaS clouds in response to client demand. Shoal provides the VMs on IaaS clouds with the location of the nearest dynamically instantiated Squid Cache.

  8. Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD.

    PubMed

    Feng, Rui; Xenos, Michalis; Girdhar, Gaurav; Kang, Wei; Davenport, James W; Deng, Yuefan; Bluestein, Danny

    2012-01-01

    Flow and stresses induced by blood flow acting on the blood cellular constituents can be represented to a certain extent by a continuum mechanics approach down to the order of the μm level. However, the molecular effects of, e.g., adhesion/aggregation bonds of blood clotting can be on the order of nm. The coupling of the disparate length and timescales between such molecular levels and macroscopic transport represents a major computational challenge. To address this challenge, a multiscale numerical approach based on discrete particle dynamics (DPD) methodology derived from molecular dynamics (MD) principles is proposed. The feasibility of the approach was firstly tested for its ability to simulate viscous flow conditions. Simulations were conducted in low Reynolds numbers flows (Re = 25-33) through constricted tubes representing blood vessels with various degrees of stenosis. Multiple discrete particles interacting with each other were simulated, with 1.24-1.36 million particles representing the flow domain and 0.4 million particles representing the vessel wall. The computation was carried out on the massive parallel supercomputer NY BlueGene/L employing NAMD-a parallel MD package for high performance computing (HPC). Typical recirculation zones were formed distal to the stenoses. The velocity profiles and recirculation zones were in excellent agreement with computational fluid dynamics (CFD) 3D Navier-Stokes viscous fluid flow simulations and with classic numerical and experimental results by YC Fung in constricted tubes. This feasibility analysis demonstrates the potential of a methodology that widely departs from a continuum approach to simulate multiscale phenomena such as flow induced blood clotting. PMID:21369918

  9. Constant pH Replica Exchange Molecular Dynamics in Explicit Solvent Using Discrete Protonation States: Implementation, Testing, and Validation

    PubMed Central

    2015-01-01

    By utilizing Graphics Processing Units, we show that constant pH molecular dynamics simulations (CpHMD) run in Generalized Born (GB) implicit solvent for long time scales can yield poor pKa predictions as a result of sampling unrealistic conformations. To address this shortcoming, we present a method for performing constant pH molecular dynamics simulations (CpHMD) in explicit solvent using a discrete protonation state model. The method involves standard molecular dynamics (MD) being propagated in explicit solvent followed by protonation state changes being attempted in GB implicit solvent at fixed intervals. Replica exchange along the pH-dimension (pH-REMD) helps to obtain acceptable titration behavior with the proposed method. We analyzed the effects of various parameters and settings on the titration behavior of CpHMD and pH-REMD in explicit solvent, including the size of the simulation unit cell and the length of the relaxation dynamics following protonation state changes. We tested the method with the amino acid model compounds, a small pentapeptide with two titratable sites, and hen egg white lysozyme (HEWL). The proposed method yields superior predicted pKa values for HEWL over hundreds of nanoseconds of simulation relative to corresponding predicted values from simulations run in implicit solvent. PMID:24803862

  10. Discrete approach to stochastic parametrization and dimension reduction in nonlinear dynamics.

    PubMed

    Chorin, Alexandre J; Lu, Fei

    2015-08-11

    Many physical systems are described by nonlinear differential equations that are too complicated to solve in full. A natural way to proceed is to divide the variables into those that are of direct interest and those that are not, formulate solvable approximate equations for the variables of greater interest, and use data and statistical methods to account for the impact of the other variables. In the present paper we consider time-dependent problems and introduce a fully discrete solution method, which simplifies both the analysis of the data and the numerical algorithms. The resulting time series are identified by a NARMAX (nonlinear autoregression moving average with exogenous input) representation familiar from engineering practice. The connections with the Mori-Zwanzig formalism of statistical physics are discussed, as well as an application to the Lorenz 96 system. PMID:26216975

  11. The global dynamics of a discrete juvenile-adult model with continuous and seasonal reproduction.

    PubMed

    Ackleh, Azmy S; Chiquet, Ross A

    2009-03-01

    A general discrete juvenile-adult population model with time-dependent birth rate and nonlinear survivorship rates is studied. When breeding is continuous, it is shown that the model has a unique globally asymptotically stable positive equilibrium provided the net reproductive number is larger than one. If it is smaller than one, then the extinction equilibrium is globally asymptotically stable. When breeding is seasonal, it is shown that there exists a unique globally asymptotically stable periodic solution provided the net reproductive number is larger than one. When this value is less than one, the population goes to extinction. Conditions on the birth rate where the population with seasonal breeding survives while the population with continuous breeding becomes extinct are provided. PMID:22880823

  12. Attractors of relaxation discrete-time systems with chaotic dynamics on a fast time scale

    NASA Astrophysics Data System (ADS)

    Maslennikov, Oleg V.; Nekorkin, Vladimir I.

    2016-07-01

    In this work, a new type of relaxation systems is considered. Their prominent feature is that they comprise two distinct epochs, one is slow regular motion and another is fast chaotic motion. Unlike traditionally studied slow-fast systems that have smooth manifolds of slow motions in the phase space and fast trajectories between them, in this new type one observes, apart the same geometric objects, areas of transient chaos. Alternating periods of slow regular motions and fast chaotic ones as well as transitions between them result in a specific chaotic attractor with chaos on a fast time scale. We formulate basic properties of such attractors in the framework of discrete-time systems and consider several examples. Finally, we provide an important application of such systems, the neuronal electrical activity in the form of chaotic spike-burst oscillations.

  13. Discrete approach to stochastic parametrization and dimension reduction in nonlinear dynamics

    PubMed Central

    Chorin, Alexandre J.; Lu, Fei

    2015-01-01

    Many physical systems are described by nonlinear differential equations that are too complicated to solve in full. A natural way to proceed is to divide the variables into those that are of direct interest and those that are not, formulate solvable approximate equations for the variables of greater interest, and use data and statistical methods to account for the impact of the other variables. In the present paper we consider time-dependent problems and introduce a fully discrete solution method, which simplifies both the analysis of the data and the numerical algorithms. The resulting time series are identified by a NARMAX (nonlinear autoregression moving average with exogenous input) representation familiar from engineering practice. The connections with the Mori–Zwanzig formalism of statistical physics are discussed, as well as an application to the Lorenz 96 system. PMID:26216975

  14. Invited Article: VEDA: A web-based virtual environment for dynamic atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Melcher, John; Hu, Shuiqing; Raman, Arvind

    2008-06-01

    We describe here the theory and applications of virtual environment dynamic atomic force microscopy (VEDA), a suite of state-of-the-art simulation tools deployed on nanoHUB (www.nanohub.org) for the accurate simulation of tip motion in dynamic atomic force microscopy (dAFM) over organic and inorganic samples. VEDA takes advantage of nanoHUB's cyberinfrastructure to run high-fidelity dAFM tip dynamics computations on local clusters and the teragrid. Consequently, these tools are freely accessible and the dAFM simulations are run using standard web-based browsers without requiring additional software. A wide range of issues in dAFM ranging from optimal probe choice, probe stability, and tip-sample interaction forces, power dissipation, to material property extraction and scanning dynamics over hetereogeneous samples can be addressed.

  15. A new dimension: Evolutionary food web dynamics in two dimensional trait space.

    PubMed

    Ritterskamp, Daniel; Bearup, Daniel; Blasius, Bernd

    2016-09-21

    Species within a habitat are not uniformly distributed. However this aspect of community structure, which is fundamental to many conservation activities, is neglected in the majority of models of food web assembly. To address this issue, we introduce a model which incorporates a second dimension, which can be interpreted as space, into the trait space used in evolutionary food web models. Our results show that the additional trait axis allows the emergence of communities with a much greater range of network structures, similar to the diversity observed in real ecological communities. Moreover, the network properties of the food webs obtained are in good agreement with those of empirical food webs. Community emergence follows a consistent pattern with spread along the second trait axis occurring before the assembly of higher trophic levels. Communities can reach either a static final structure, or constantly evolve. We observe that the relative importance of competition and predation is a key determinant of the network structure and the evolutionary dynamics. The latter are driven by the interaction-competition and predation-between small groups of species. The model remains sufficiently simple that we are able to identify the factors, and mechanisms, which determine the final community state. PMID:27060671

  16. Modelling crystal plasticity by 3D dislocation dynamics and the finite element method: The Discrete-Continuous Model revisited

    NASA Astrophysics Data System (ADS)

    Vattré, A.; Devincre, B.; Feyel, F.; Gatti, R.; Groh, S.; Jamond, O.; Roos, A.

    2014-02-01

    A unified model coupling 3D dislocation dynamics (DD) simulations with the finite element (FE) method is revisited. The so-called Discrete-Continuous Model (DCM) aims to predict plastic flow at the (sub-)micron length scale of materials with complex boundary conditions. The evolution of the dislocation microstructure and the short-range dislocation-dislocation interactions are calculated with a DD code. The long-range mechanical fields due to the dislocations are calculated by a FE code, taking into account the boundary conditions. The coupling procedure is based on eigenstrain theory, and the precise manner in which the plastic slip, i.e. the dislocation glide as calculated by the DD code, is transferred to the integration points of the FE mesh is described in full detail. Several test cases are presented, and the DCM is applied to plastic flow in a single-crystal Nickel-based superalloy.

  17. Adaptive dynamic programming for finite-horizon optimal control of discrete-time nonlinear systems with ε-error bound.

    PubMed

    Wang, Fei-Yue; Jin, Ning; Liu, Derong; Wei, Qinglai

    2011-01-01

    In this paper, we study the finite-horizon optimal control problem for discrete-time nonlinear systems using the adaptive dynamic programming (ADP) approach. The idea is to use an iterative ADP algorithm to obtain the optimal control law which makes the performance index function close to the greatest lower bound of all performance indices within an ε-error bound. The optimal number of control steps can also be obtained by the proposed ADP algorithms. A convergence analysis of the proposed ADP algorithms in terms of performance index function and control policy is made. In order to facilitate the implementation of the iterative ADP algorithms, neural networks are used for approximating the performance index function, computing the optimal control policy, and modeling the nonlinear system. Finally, two simulation examples are employed to illustrate the applicability of the proposed method. PMID:20876014

  18. Existence, stability and dynamics of discrete solitary waves in a binary waveguide array

    NASA Astrophysics Data System (ADS)

    Shen, Y.; Kevrekidis, P. G.; Srinivasan, G.; Aceves, A. B.

    2016-07-01

    Recent work has explored binary waveguide arrays in the long-wavelength, near-continuum limit, here we examine the opposite limit, namely the vicinity of the so-called anti-continuum limit. We provide a systematic discussion of states involving one, two and three excited waveguides, and provide comparisons that illustrate how the stability of these states differ from the monoatomic limit of a single type of waveguide. We do so by developing a general theory which systematically tracks down the key eigenvalues of the linearized system. When we find the states to be unstable, we explore their dynamical evolution through direct numerical simulations. The latter typically illustrate, for the parameter values considered herein, the persistence of localized dynamics and the emergence for the duration of our simulations of robust quasi-periodic states for two excited sites. As the number of excited nodes increases, the unstable dynamics feature less regular oscillations of the solution’s amplitude.

  19. Markov state modeling and dynamical coarse-graining via discrete relaxation path sampling.

    PubMed

    Fačkovec, B; Vanden-Eijnden, E; Wales, D J

    2015-07-28

    A method is derived to coarse-grain the dynamics of complex molecular systems to a Markov jump process (MJP) describing how the system jumps between cells that fully partition its state space. The main inputs are relaxation times for each pair of cells, which are shown to be robust with respect to positioning of the cell boundaries. These relaxation times can be calculated via molecular dynamics simulations performed in each cell separately and are used in an efficient estimator for the rate matrix of the MJP. The method is illustrated through applications to Sinai billiards and a cluster of Lennard-Jones discs. PMID:26233119

  20. Data compression of discrete sequence: A tree based approach using dynamic programming

    NASA Technical Reports Server (NTRS)

    Shivaram, Gurusrasad; Seetharaman, Guna; Rao, T. R. N.

    1994-01-01

    A dynamic programming based approach for data compression of a ID sequence is presented. The compression of an input sequence of size N to that of a smaller size k is achieved by dividing the input sequence into k subsequences and replacing the subsequences by their respective average values. The partitioning of the input sequence is carried with the intention of reducing the mean squared error in the reconstructed sequence. The complexity involved in finding the partitions which would result in such an optimal compressed sequence is reduced by using the dynamic programming approach, which is presented.

  1. Speciation dynamics of metals in dispersion of nanoparticles with discrete distribution of charged binding sites.

    PubMed

    Polyakov, Pavel D; Duval, Jérôme F L

    2014-02-01

    We report a comprehensive theory to evaluate the kinetics of complex formation between metal ions and charged spherical nanoparticles. The latter consist of an ion-impermeable core surrounded by a soft shell layer characterized by a discrete axisymmetric 2D distribution of charged sites that bind metal ions. The theory explicitly integrates the conductive diffusion of metal ions from bulk solution toward the respective locations of the reactive sites within the particle shell volume. The kinetic constant k for outer-sphere nanoparticle-metal association is obtained from the sum of the contributions stemming from all reactive sites, each evaluated from the corresponding incoming flux of metal ions derived from steady-state Poisson-Nernst-Planck equations. Illustrations are provided to capture the basic intertwined impacts of particle size, overall particle charge, spatial heterogeneity in site distribution, type of particle (hard, core-shell or porous) and concentration of the background electrolyte on k. As a limit, k converges with predictions from previously reported analytical expressions derived for porous particles with low and high charge density, cases that correspond to coulombic and mean-field (smeared-out) electrostatic treatments, respectively. The conditions underlying the applicability of these latter approaches are rigorously identified in terms of (i) the extent of overlap between electric double layers around charged neighbouring sites, and (ii) the magnitude of the intraparticulate metal concentration gradient. For the first time, the proposed theory integrates the differentiated impact of the local potential around the charged binding sites amidst the overall particle field, together with that of the so-far discarded intraparticulate flux of metal ions. PMID:24336523

  2. Stratification of discharge in noble gases from the viewpoint of the discrete dynamics

    SciTech Connect

    Golubovskii, Yu. Pelyukhova, E.; Sigeneger, F.; Nekuchaev, V.

    2015-03-15

    Based on the analysis of electron phase trajectories in sinusoidal electric fields, a new point of view on discharge stratification is proposed. It is shown that the positive column can be considered as a spatial resonator in which electric fields with a fundamental period length L{sub S} or higher mode length q/p L{sub S} establish, where p and q are integers and p > q. The fundamental mode length L{sub S} is equivalent to the distance on which electrons gain energy equal to the lowest excitation threshold. This distance determines a length of the S-striation. Unlike kinetic theory, in the presented model resonance properties of the discharge column are not connected with elastic collision energy losses. A point map is used to obtain the resonance trajectories of electrons in the phase plane. Stable points for the positions of inelastic collisions in the resonance trajectories have been found at the positions of field maxima in the case of integer ratios p/q . For non-integer ratios p/q , multiple resonance trajectories arise according to a more complex stability criterion. From this point of view, S-, P-, and R-striations in noble gas discharges can be explained. Due to energy losses in elastic collisions, initial electron energy distribution functions converge to the resonance trajectories (the so-called “bunch effect”). The findings of the discrete model agree with results of kinetic theory and experiment. The new approach avoids difficulties of the kinetic theory in the case of exceptionally large relaxation lengths which can even exceed the positive column length.

  3. Minimax terminal approach problem in two-level hierarchical nonlinear discrete-time dynamical system

    SciTech Connect

    Shorikov, A. F.

    2015-11-30

    We consider a discrete–time dynamical system consisting of three controllable objects. The motions of all objects are given by the corresponding vector nonlinear or linear discrete–time recurrent vector relations, and control system for its has two levels: basic (first or I level) that is dominating and subordinate level (second or II level) and both have different criterions of functioning and united a priori by determined informational and control connections defined in advance. For the dynamical system in question, we propose a mathematical formalization in the form of solving a multistep problem of two-level hierarchical minimax program control over the terminal approach process with incomplete information and give a general scheme for its solving.

  4. Development of a laboratory niche Web site.

    PubMed

    Dimenstein, Izak B; Dimenstein, Simon I

    2013-10-01

    This technical note presents the development of a methodological laboratory niche Web site. The "Grossing Technology in Surgical Pathology" (www.grossing-technology.com) Web site is used as an example. Although common steps in creation of most Web sites are followed, there are particular requirements for structuring the template's menu on methodological laboratory Web sites. The "nested doll principle," in which one object is placed inside another, most adequately describes the methodological approach to laboratory Web site design. Fragmentation in presenting the Web site's material highlights the discrete parts of the laboratory procedure. An optimally minimal triad of components can be recommended for the creation of a laboratory niche Web site: a main set of media, a blog, and an ancillary component (host, contact, and links). The inclusion of a blog makes the Web site a dynamic forum for professional communication. By forming links and portals, cloud computing opens opportunities for connecting a niche Web site with other Web sites and professional organizations. As an additional source of information exchange, methodological laboratory niche Web sites are destined to parallel both traditional and new forms, such as books, journals, seminars, webinars, and internal educational materials. PMID:23769601

  5. New perspectives for Discrete Element Modeling: Merging Computational Geometry and Molecular Dynamics

    NASA Astrophysics Data System (ADS)

    Alonso-Marroquín, Fernando; Galindo-Torres, Sergio-Andres; Tordesillas, Antoinette; Wang, Yucang

    2009-06-01

    One of the most challenging problems in the realistic modeling of granular materials is how to capture the real shape of the particles. Here we present a method to simulate systems with complex-shaped particles. This method integrates developments in two traditionally separate research areas: computational geometry and molecular dynamics. The computational geometry involves the implementation of techniques of computer graphics to represent particle shape and collision detection. Traditional techniques from molecular dynamics are used to integrate the equations of motion and to perform an efficient calculation of contact forces. The algorithm to solve the dynamics of the system is much more efficient, accurate and easier to implement than other models. The algorithm is used to simulate quasistatic deformation of granular materials using two different models. The first model consists of non-circular particles interacting via frictional forces. The second model consists of circular particles interacting via rolling and sliding resistance. The comparison of both models help us to understand and quantify the extend to which the effects of particle shape can be captured by the introduction of artificial rolling resistance on circular particles. Biaxial test simulation show that the overall response of the system and the collapse of force chains at the critical state is qualitatively similar in both 2D and 3D simulations.

  6. pH-replica exchange molecular dynamics in proteins using a discrete protonation method.

    PubMed

    Sabri Dashti, Danial; Meng, Yilin; Roitberg, Adrian E

    2012-08-01

    Protonation equilibria in biological molecules modulates structure, dynamics, and function. A pH-replica exchange molecular dynamics (pH-REMD) method is described here to improve the coupling between conformational and protonation sampling. Under a Hamiltonian replica exchange setup, conformations are swapped between two neighboring replicas, which themselves are at different pHs. The method has been validated on a series of biological systems. We applied pH-REMD to a series of model compounds, to an terminally charged ADFDA pentapeptide, and to a heptapeptide derived from the ovomucoid third domain (OMTKY3). In all of those systems, the predicted pK(a) by pH-REMD is very close to the experimental value and almost identical to the ones obtained by constant pH molecular dynamics (CpH MD). The method presented here, pH-REMD, has the advantage of faster convergence properties due to enhanced sampling of both conformation and protonation spaces. PMID:22694266

  7. Web-based experiments for the study of collective social dynamics in cultural markets.

    PubMed

    Salganik, Matthew J; Watts, Duncan J

    2009-07-01

    Social scientists are often interested in understanding how the dynamics of social systems are driven by the behavior of individuals that make up those systems. However, this process is hindered by the difficulty of experimentally studying how individual behavioral tendencies lead to collective social dynamics in large groups of people interacting over time. In this study, we investigate the role of social influence, a process well studied at the individual level, on the puzzling nature of success for cultural products such as books, movies, and music. Using a "multiple-worlds" experimental design, we are able to isolate the causal effect of an individual-level mechanism on collective social outcomes. We employ this design in a Web-based experiment in which 2,930 participants listened to, rated, and downloaded 48 songs by up-and-coming bands. Surprisingly, despite relatively large differences in the demographics, behavior, and preferences of participants, the experimental results at both the individual and collective levels were similar to those found in Salganik, Dodds, and Watts (2006). Further, by comparing results from two distinct pools of participants, we are able to gain new insights into the role of individual behavior on collective outcomes. We conclude with a discussion of the strengths and weaknesses of Web-based experiments to address questions of collective social dynamics. PMID:25164996

  8. Dynamically Coupled Food-web and Hydrodynamic Modeling with ADH-CASM

    NASA Astrophysics Data System (ADS)

    Piercy, C.; Swannack, T. M.

    2012-12-01

    Oysters and freshwater mussels are "ecological engineers," modifying the local water quality by filtering zooplankton and other suspended particulate matter from the water column and flow hydraulics by impinging on the near-bed flow environment. The success of sessile, benthic invertebrates such as oysters depends on environmental factors including but not limited to temperature, salinity, and flow regime. Typically food-web and other types of ecological models use flow and water quality data as direct input without regard to the feedback between the ecosystem and the physical environment. The USACE-ERDC has developed a coupled hydrodynamic-ecological modeling approach that dynamically couples a 2-D hydrodynamic and constituent transport model, Adaptive Hydraulics (ADH), with a bioenergetics food-web model, the Comprehensive Aquatics Systems Model (CASM), which captures the dynamic feedback between aquatic ecological systems and the environment. We present modeling results from restored oyster reefs in the Great Wicomico River on the western shore of the Chesapeake Bay, which quantify ecosystem services such as the influence of the benthic ecosystem on water quality. Preliminary results indicate that while the influence of oyster reefs on bulk flow dynamics is limited due to the localized influence of oyster reefs, large reefs and the associated benthic ecosystem can create measurable changes in the concentrations of nitrogen, phosphorus, and carbon in the areas around reefs. We also present a sensitivity analysis to quantify the relative sensitivity of the coupled ADH-CASM model to both hydrodynamic and ecological parameter choice.

  9. Web-based experiments for the study of collective social dynamics in cultural markets

    PubMed Central

    Salganik, Matthew J.; Watts, Duncan J.

    2013-01-01

    Social scientists are often interested in understanding how the dynamics of social systems are driven by the behavior of individuals that make up those systems. However, this process is hindered by the difficulty of experimentally studying how individual behavioral tendencies lead to collective social dynamics in large groups of people interacting over time. In this paper we investigate the role of social influence, a process well studied at the individual level, on the puzzling nature of success for cultural products such as books, movies, and music. Using a “multiple-worlds” experimental design we are able to isolate the causal effect of an individual level mechanism on collective social outcomes. We employ this design in a web-based experiment in which 2,930 participants listened to, rated, and download 48 songs by up-and-coming bands. Surprisingly, despite relatively large differences in the demographics, behavior, and preferences of participants, the experimental results at both the individual and collective level were similar to those found in Salganik, Dodds, and Watts (2006). Further, by comparing results from two distinct pools of participants we are able to gain new insights into the role of individual behavior on collective outcomes. We conclude with a discussion of the strengths and weaknesses of web-based experiments to address questions of collective social dynamics. PMID:25164996

  10. Dynamics of Leslie-Gower type generalist predator in a tri-trophic food web system

    NASA Astrophysics Data System (ADS)

    Priyadarshi, A.; Gakkhar, S.

    2013-11-01

    In this paper, the dynamics of a tri-trophic food web system consists of Leslie-Gower type generalist predator has been explored. The system is bounded under certain conditions. The Hopf-bifurcation has been established in the phase planes. The bifurcation diagrams exhibit coexistence of all three species in the form of periodic/chaotic solutions. The "snail-shell" chaotic attractor has very high Lyapunov exponents. The coexistence in the form of stable equilibrium is also possible for lower values of parameters. The two-parameter bifurcation diagrams are drawn for critical parameters.

  11. Glassy Interfacial Dynamics of Ni Nanoparticles: Part II Discrete Breathers as an Explanation of Two-Level Energy Fluctuations

    PubMed Central

    Zhang, Hao; Douglas, Jack F.

    2012-01-01

    Recent studies of the dynamics of diverse condensed amorphous materials have indicated significant heterogeneity in the local mobility and a progressive increase in collective particle motion upon cooling that takes the form of string-like particle rearrangements. In a previous paper (Part I), we examined the possibility that fluctuations in potential energy E and particle mobility μ associated with this ‘dynamic heterogeneity’ might offer information about the scale of collective motion in glassy materials based on molecular dynamics simulations of the glassy interfacial region of Ni nanoparticles (NPs) at elevated temperatures. We found that the noise exponent associated with fluctuations in the Debye-Waller factor, a mobility related quantity, was directly proportional to the scale of collective motion L under a broad range of conditions, but the noise exponent associated with E(t) fluctuations was seemingly unrelated to L. In the present work, we focus on this unanticipated difference between potential energy and mobility fluctuations by examining these quantities at an atomic scale. We find that the string atoms exhibit a jump-like motion between two well-separated bands of energy states and the rate at which these jumps occur seems to be consistent with the phenomenology of the ‘slow-beta’ relaxation process of glass-forming liquids. Concurrently with these local E(t) jumps, we also find ‘quake-like’ particle displacements having a power-law distribution in magnitude so that particle displacement fluctuations within the strings are strikingly different from local E(t) fluctuations. An analysis of these E(t) fluctuations suggests that we are dealing with ‘discrete breather’ excitations in which large energy fluctuations develop in arrays of non-linear oscillators by virtue of large anharmonicity in the interparticle interactions and discreteness effects associated with particle packing. We quantify string collective motions on a fast caging

  12. PCB Food Web Dynamics Quantify Nutrient and Energy Flow in Aquatic Ecosystems.

    PubMed

    McLeod, Anne M; Paterson, Gordon; Drouillard, Ken G; Haffner, G Douglas

    2015-11-01

    Measuring in situ nutrient and energy flows in spatially and temporally complex aquatic ecosystems represents a major ecological challenge. Food web structure, energy and nutrient budgets are difficult to measure, and it is becoming more important to quantify both energy and nutrient flow to determine how food web processes and structure are being modified by multiple stressors. We propose that polychlorinated biphenyl (PCB) congeners represent an ideal tracer to quantify in situ energy and nutrient flow between trophic levels. Here, we demonstrate how an understanding of PCB congener bioaccumulation dynamics provides multiple direct measurements of energy and nutrient flow in aquatic food webs. To demonstrate this novel approach, we quantified nitrogen (N), phosphorus (P) and caloric turnover rates for Lake Huron lake trout, and reveal how these processes are regulated by both growth rate and fish life history. Although minimal nutrient recycling was observed in young growing fish, slow growing, older lake trout (>5 yr) recycled an average of 482 Tonnes·yr(-1) of N, 45 Tonnes·yr(-1) of P and assimilated 22 TJ yr(-1) of energy. Compared to total P loading rates of 590 Tonnes·yr(-1), the recycling of primarily bioavailable nutrients by fish plays an important role regulating the nutrient states of oligotrophic lakes. PMID:26437236

  13. Web-Based Dynamic Assessment: Taking Assessment as Teaching and Learning Strategy for Improving Students e-Learning Effectiveness

    ERIC Educational Resources Information Center

    Wang, Tzu-Hua

    2010-01-01

    This research combines the idea of cake format dynamic assessment defined by Sternberg and Grigorenko (2001) and the "graduated prompt approach" proposed by (Campione and Brown, 1985) and (Campione and Brown, 1987) to develop a multiple-choice Web-based dynamic assessment system. This research adopts a quasi-experimental design to investigate the…

  14. Turing pattern dynamics and adaptive discretization for a super-diffusive Lotka-Volterra model.

    PubMed

    Bendahmane, Mostafa; Ruiz-Baier, Ricardo; Tian, Canrong

    2016-05-01

    In this paper we analyze the effects of introducing the fractional-in-space operator into a Lotka-Volterra competitive model describing population super-diffusion. First, we study how cross super-diffusion influences the formation of spatial patterns: a linear stability analysis is carried out, showing that cross super-diffusion triggers Turing instabilities, whereas classical (self) super-diffusion does not. In addition we perform a weakly nonlinear analysis yielding a system of amplitude equations, whose study shows the stability of Turing steady states. A second goal of this contribution is to propose a fully adaptive multiresolution finite volume method that employs shifted Grünwald gradient approximations, and which is tailored for a larger class of systems involving fractional diffusion operators. The scheme is aimed at efficient dynamic mesh adaptation and substantial savings in computational burden. A numerical simulation of the model was performed near the instability boundaries, confirming the behavior predicted by our analysis. PMID:26219250

  15. Modeling of abnormal mechanical properties of nickel-based single crystal superalloy by three-dimensional discrete dislocation dynamics

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Li, Zhenhuan; Huang, Minsheng

    2014-12-01

    Unlike common single crystals, the nickel-based single crystal superalloy shows surprisingly anomalous flow strength (i.e. with the increase of temperature, the yield strength first increases to a peak value and then decreases) and tension-compression (TC) asymmetry. A comprehensive three-dimensional discrete dislocation dynamics (3D-DDD) procedure was developed to model these abnormal mechanical properties. For this purpose, a series of complicated dynamic evolution details of Kear-Wilsdorf (KW) locks, which are closely related to the flow strength anomaly and TC asymmetry, were incorporated into this 3D-DDD framework. Moreover, the activation of the cubic slip system, which is the origin of the decrease in yield strength with increasing temperature at relatively high temperatures, was especially taken into account by introducing a competition criterion between the unlocking of the KW locks and the activation of the cubic slip system. To test our framework, a series of 3D-DDD simulations were performed on a representative volume cell model with a cuboidal Ni3Al precipitate phase embedded in a nickel matrix. Results show that the present 3D-DDD procedure can successfully capture the dynamic evolution of KW locks, the flow strength anomaly and TC asymmetry. Then, the underlying dislocation mechanisms leading to these abnormal mechanical responses were investigated and discussed in detail. Finally, a cyclic deformation of the nickel-based single crystal superalloy was modeled by using the present DDD model, with a special focus on the influence of KW locks on the Bauschinger effect and cyclic softening.

  16. The effects of mixotrophy on the stability and dynamics of a simple planktonic food web

    USGS Publications Warehouse

    Jost, Christian; Lawrence, Cathryn A.; Campolongo, Francesca; Wouter, van de Bund; Hill, Sheryl; DeAngelis, Donald L.

    2004-01-01

    Recognition of the microbial loop as an important part of aquatic ecosystems disrupted the notion of simple linear food chains. However, current research suggests that even the microbial loop paradigm is a gross simplification of microbial interactions due to the presence of mixotrophs—organisms that both photosynthesize and graze. We present a simple food web model with four trophic species, three of them arranged in a food chain (nutrients–autotrophs–herbivores) and the fourth as a mixotroph with links to both the nutrients and the autotrophs. This model is used to study the general implications of inclusion of the mixotrophic link in microbial food webs and the specific predictions for a parameterization that describes open ocean mixed layer plankton dynamics. The analysis indicates that the system parameters reside in a region of the parameter space where the dynamics converge to a stable equilibrium rather than displaying periodic or chaotic solutions. However, convergence requires weeks to months, suggesting that the system would never reach equilibrium in the ocean due to alteration of the physical forcing regime. Most importantly, the mixotrophic grazing link seems to stabilize the system in this region of the parameter space, particularly when nutrient recycling feedback loops are included.

  17. Identification of continuous-time models for nonlinear dynamic systems from discrete data

    NASA Astrophysics Data System (ADS)

    Guo, Yuzhu; Guo, Ling Zhong; Billings, Stephen A.; Wei, Hua-Liang

    2016-09-01

    A new iOFR-MF (iterative orthogonal forward regression--modulating function) algorithm is proposed to identify continuous-time models from noisy data by combining the MF method and the iOFR algorithm. In the new method, a set of candidate terms, which describe different dynamic relationships among the system states or between the input and output, are first constructed. These terms are then modulated using the MF method to generate the data matrix. The iOFR algorithm is next applied to build the relationships between these modulated terms, which include detecting the model structure and estimating the associated parameters. The relationships between the original variables are finally recovered from the model of the modulated terms. Both nonlinear state-space models and a class of higher order nonlinear input-output models are considered. The new direct method is compared with the traditional finite difference method and results show that the new method performs much better than the finite difference method. The new method works well even when the measurements are severely corrupted by noise. The selection of appropriate MFs is also discussed.

  18. ELECTROMAGNETISM, OPTICS, ACOUSTICS, HEAT TRANSFER, CLASSICAL MECHANICS, AND FLUID DYNAMICS: Numerical Simulation of Antennae by Discrete Exterior Calculus

    NASA Astrophysics Data System (ADS)

    Xie, Zheng; Ye, Zheng; Ma, Yu-Jie

    2009-12-01

    Numerical simulation of antennae is a topic in computational electromagnetism, which is concerned with the numerical study of Maxwell equations. By discrete exterior calculus and the lattice gauge theory with coefficient R, we obtain the Bianchi identity on prism lattice. By defining an inner product of discrete differential forms, we derive the source equation and continuity equation. Those equations compose the discrete Maxwell equations in vacuum case on discrete manifold, which are implemented on Java development platform to simulate the Gaussian pulse radiation on antennaes.

  19. Implementation and characterization of a quartz tuning fork based probe consisted of discrete resonators for dynamic mode atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Akiyama, Terunobu; de Rooij, Nicolaas F.; Staufer, Urs; Detterbeck, Manfred; Braendlin, Dominik; Waldmeier, Simon; Scheidiger, Martin

    2010-06-01

    The quartz tuning fork based probe {e.g., Akiyama et al. [Appl. Surf. Sci. 210, 18 (2003)]}, termed "A-Probe," is a self-sensing and self-actuating (exciting) probe for dynamic mode atomic force microscope (AFM) operation. It is an oscillatory force sensor consisting of the two discrete resonators. This paper presents the investigations on an improved A-Probe: its batch fabrication and assembly, mounting on an AFM head, electrical setup, characterization, and AFM imaging. The fundamental features of the A-Probe are electrically and optically characterized in "approach-withdraw" experiments. Further investigations include the frequency response of an A-Probe to small mechanical vibrations externally applied to the tip and the effective loading force yielding between the tip and the sample during the periodic contact. Imaging of an electronic chip, a compact disk stamper, carbon nanotubes, and Si beads is demonstrated with this probe at ambient conditions in the so-called frequency modulation mode. A special probe substrate, which can snap on a receptacle fixed on an AFM head, and a special holder including a preamplifier electronic are introduced. We hope that the implementation and characterization of the A-Probe described in this paper will provide hints for new scanning probe techniques.

  20. Dipole-excited surface plasmons in metallic nanoparticles: Engineering decay dynamics within the discrete-dipole approximation

    NASA Astrophysics Data System (ADS)

    D'Agostino, Stefania; Della Sala, Fabio; Andreani, Lucio Claudio

    2013-05-01

    A theoretical control of the electromagnetic coupling between localized surface plasmons and pointlike sources of radiation is a relevant topic in nanoscience and nanophotonics. In this paper a numerical approach based on the discrete dipole approximation is presented as a practical and reliable computational tool to study the decay dynamics of a dipole when it is located in the near proximities of metallic nanoparticles whose shapes do not allow a fully analytical treatment. The method is first applied to Ag nanospheres and nanoshells, which represent two analytically solvable cases, and it is shown to lead to a very good agreement with exact results. The approach is then used to consider the response, in terms of perturbations induced on the radiative and nonradiative decay rates, of elongated nanoparticles, like Ag prolate spheroids and nanocones. Results demonstrate how the optical response of conically shaped nanoparticles can be affected by the distance and the orientation of the emitter of radiation, as well as by other geometrical parameters. The particular symmetry of these plasmonic objects results in peculiar features: the absorption efficiencies of the modes depend on the distance of the source of radiation in a counterintuitive way, and this is explained in terms of the excited charge density distributions. The possibility to simulate arbitrary-shaped nanostructures and several dipole-metal configurations presented here, could thus open new avenues for an aware use of surface plasmons in fluorescence spectroscopy applications or single photon emission studies.

  1. Discrete dynamic modeling with asynchronous update, or how to model complex systems in the absence of quantitative information.

    PubMed

    Assmann, Sarah M; Albert, Réka

    2009-01-01

    A major aim of systems biology is the study of the inter-relationships found within and between large biological data sets. Here we describe one systems biology method, in which the tools of network analysis and discrete dynamic (Boolean) modeling are used to develop predictive models of cellular signaling in cases where detailed temporal and kinetic information regarding the propagation of the signal through the system is lacking. This approach is also applicable to data sets derived from some other types of biological systems, such as transcription factor-mediated regulation of gene expression during the control of developmental fate, or host defense responses following pathogen attack, and is equally applicable to plant and non-plant systems. The method also allows prediction of how elimination of one or more individual signaling components will affect the ultimate outcome, thus allowing the researcher to model the effects of genetic knockout or pharmacological block. The method also serves as a starting point from which more quantitative models can be developed as additional information becomes available. PMID:19588107

  2. The role of twinning deformation on the hardening response of polycrystalline magnesium from discrete dislocation dynamics simulations

    SciTech Connect

    Fan, Haidong; Aubry, Sylvie; Arsenlis, Athanasios; El-Awady, Jaafar A.

    2015-04-13

    The mechanical response of micro-twinned polycrystalline magnesium was studied through three-dimensional discrete dislocation dynamics (DDD). A systematic interaction model between dislocations and (1012) tension twin boundaries (TBs) was proposed and introduced into the DDD framework. In addition, a nominal grain boundary (GB) model agreeing with experimental results was also introduced to mimic the GB’s barrier effect. The current simulation results show that TBs act as a strong obstacle to gliding dislocations, which contributes significantly to the hardening behavior of magnesium. On the other hand, the deformation accommodated by twinning plays a softening role. Therefore, the concave shape of the Mg stress-strain curve results from the competition between dislocation-TB induced hardening and twinning deformation induced softening. At low strain levels, twinning deformation induced softening dominates and a decreasing hardening rate is observed in Stage-I. In Stage-II, both the hardening and softening effects decline, but twinning deformation induced softening declines faster, which leads to an increasing hardening rate.

  3. The role of twinning deformation on the hardening response of polycrystalline magnesium from discrete dislocation dynamics simulations

    DOE PAGESBeta

    Fan, Haidong; Aubry, Sylvie; Arsenlis, Athanasios; El-Awady, Jaafar A.

    2015-04-13

    The mechanical response of micro-twinned polycrystalline magnesium was studied through three-dimensional discrete dislocation dynamics (DDD). A systematic interaction model between dislocations and (1012) tension twin boundaries (TBs) was proposed and introduced into the DDD framework. In addition, a nominal grain boundary (GB) model agreeing with experimental results was also introduced to mimic the GB’s barrier effect. The current simulation results show that TBs act as a strong obstacle to gliding dislocations, which contributes significantly to the hardening behavior of magnesium. On the other hand, the deformation accommodated by twinning plays a softening role. Therefore, the concave shape of the Mgmore » stress-strain curve results from the competition between dislocation-TB induced hardening and twinning deformation induced softening. At low strain levels, twinning deformation induced softening dominates and a decreasing hardening rate is observed in Stage-I. In Stage-II, both the hardening and softening effects decline, but twinning deformation induced softening declines faster, which leads to an increasing hardening rate.« less

  4. Discrete infinite-dimensional type-K monotone dynamical systems and time-periodic reaction-diffusion systems

    NASA Astrophysics Data System (ADS)

    Liang, Xing; Jiang, Jifa

    The asymptotic behavior of discrete type-K monotone dynamical systems and reaction-diffusion equations is investigated. The studying content includes the index theory for fixed points, permanence, global stability, convergence everywhere and coexistence. It is shown that the system has a globally asymptotically stable fixed point if every fixed point is locally asymptotically stable with respect to the face it belongs to and at this point the principal eigenvalue of the diagonal partial derivative about any component not belonging to the face is not one. A nice result presented is the sufficient and necessary conditions for the system to have a globally asymptotically stable positive fixed point. It can be used to establish the sufficient conditions for the system to persist uniformly and the convergent result for all orbits. Applications are made to time-periodic Lotka-Volterra systems with diffusion, and sufficient conditions for such systems to have a unique positive periodic solution attracting all positive initial value functions are given. For more general time-periodic type-K monotone reaction-diffusion systems with spatial homogeneity, a simple condition is given to guarantee the convergence of all positive solutions.

  5. Influence of misfit stresses on dislocation glide in single crystal superalloys: A three-dimensional discrete dislocation dynamics study

    NASA Astrophysics Data System (ADS)

    Gao, Siwen; Fivel, Marc; Ma, Anxin; Hartmaier, Alexander

    2015-03-01

    In the characteristic γ / γ ‧ microstructure of single crystal superalloys, misfit stresses occur due to a significant lattice mismatch of those two phases. The magnitude of this lattice mismatch depends on the chemical composition of both phases as well as on temperature. Furthermore, the lattice mismatch of γ and γ ‧ phases can be either positive or negative in sign. The internal stresses caused by such lattice mismatch play a decisive role for the micromechanical processes that lead to the observed macroscopic athermal deformation behavior of these high-temperature alloys. Three-dimensional discrete dislocation dynamics (DDD) simulations are applied to investigate dislocation glide in γ matrix channels and shearing of γ ‧ precipitates by superdislocations under externally applied uniaxial stresses, by fully taking into account internal misfit stresses. Misfit stress fields are calculated by the fast Fourier transformation (FFT) method and hybridized with DDD simulations. For external loading along the crystallographic [001] direction of the single crystal, it was found that the different internal stress states for negative and positive lattice mismatch result in non-uniform dislocation movement and different dislocation patterns in horizontal and vertical γ matrix channels. Furthermore, positive lattice mismatch produces a lower deformation rate than negative lattice mismatch under the same tensile loading, but for an increasing magnitude of lattice mismatch, the deformation resistance always diminishes. Hence, the best deformation performance is expected to result from alloys with either small positive, or even better, vanishing lattice mismatch between γ and γ ‧ phase.

  6. Discrete Inverse and State Estimation Problems

    NASA Astrophysics Data System (ADS)

    Wunsch, Carl

    2006-06-01

    The problems of making inferences about the natural world from noisy observations and imperfect theories occur in almost all scientific disciplines. This book addresses these problems using examples taken from geophysical fluid dynamics. It focuses on discrete formulations, both static and time-varying, known variously as inverse, state estimation or data assimilation problems. Starting with fundamental algebraic and statistical ideas, the book guides the reader through a range of inference tools including the singular value decomposition, Gauss-Markov and minimum variance estimates, Kalman filters and related smoothers, and adjoint (Lagrange multiplier) methods. The final chapters discuss a variety of practical applications to geophysical flow problems. Discrete Inverse and State Estimation Problems is an ideal introduction to the topic for graduate students and researchers in oceanography, meteorology, climate dynamics, and geophysical fluid dynamics. It is also accessible to a wider scientific audience; the only prerequisite is an understanding of linear algebra. Provides a comprehensive introduction to discrete methods of inference from incomplete information Based upon 25 years of practical experience using real data and models Develops sequential and whole-domain analysis methods from simple least-squares Contains many examples and problems, and web-based support through MIT opencourseware

  7. Synchronous Discrete Harmonic Oscillator

    SciTech Connect

    Antippa, Adel F.; Dubois, Daniel M.

    2008-10-17

    We introduce the synchronous discrete harmonic oscillator, and present an analytical, numerical and graphical study of its characteristics. The oscillator is synchronous when the time T for one revolution covering an angle of 2{pi} in phase space, is an integral multiple N of the discrete time step {delta}t. It is fully synchronous when N is even. It is pseudo-synchronous when T/{delta}t is rational. In the energy conserving hyperincursive representation, the phase space trajectories are perfectly stable at all time scales, and in both synchronous and pseudo-synchronous modes they cycle through a finite number of phase space points. Consequently, both the synchronous and the pseudo-synchronous hyperincursive modes of time-discretization provide a physically realistic and mathematically coherent, procedure for dynamic, background independent, discretization of spacetime. The procedure is applicable to any stable periodic dynamical system, and provokes an intrinsic correlation between space and time, whereby space-discretization is a direct consequence of background-independent time-discretization. Hence, synchronous discretization moves the formalism of classical mechanics towards that of special relativity. The frequency of the hyperincursive discrete harmonic oscillator is ''blue shifted'' relative to its continuum counterpart. The frequency shift has the precise value needed to make the speed of the system point in phase space independent of the discretizing time interval {delta}t. That is the speed of the system point is the same on the polygonal (in the discrete case) and the circular (in the continuum case) phase space trajectories.

  8. The Impact of 850,000 Years of Climate Changes on the Structure and Dynamics of Mammal Food Webs

    PubMed Central

    Nenzén, Hedvig K.; Montoya, Daniel; Varela, Sara

    2014-01-01

    Most evidence of climate change impacts on food webs comes from modern studies and little is known about how ancient food webs have responded to climate changes in the past. Here, we integrate fossil evidence from 71 fossil sites, body-size relationships and actualism to reconstruct food webs for six large mammal communities that inhabited the Iberian Peninsula at different times during the Quaternary. We quantify the long-term dynamics of these food webs and study how their structure changed across the Quaternary, a period for which fossil data and climate changes are well known. Extinction, immigration and turnover rates were correlated with climate changes in the last 850 kyr. Yet, we find differences in the dynamics and structural properties of Pleistocene versus Holocene mammal communities that are not associated with glacial-interglacial cycles. Although all Quaternary mammal food webs were highly nested and robust to secondary extinctions, general food web properties changed in the Holocene. These results highlight the ability of communities to re-organize with the arrival of phylogenetically similar species without major structural changes, and the impact of climate change and super-generalist species (humans) on Iberian Holocene mammal communities. PMID:25207754

  9. Microbial food web dynamics along a soil chronosequence of a glacier forefield

    NASA Astrophysics Data System (ADS)

    Esperschütz, J.; Pérez-de-Mora, A.; Schreiner, K.; Welzl, G.; Buegger, F.; Zeyer, J.; Hagedorn, F.; Munch, J. C.; Schloter, M.

    2011-11-01

    Microbial food webs are critical for efficient nutrient turnover providing the basis for functional and stable ecosystems. However, the successional development of such microbial food webs and their role in "young" ecosystems is unclear. Due to a continuous glacier retreat since the middle of the 19th century, glacier forefields have expanded offering an excellent opportunity to study food web dynamics in soils at different developmental stages. In the present study, litter degradation and the corresponding C fluxes into microbial communities were investigated along the forefield of the Damma glacier (Switzerland). 13C-enriched litter of the pioneering plant Leucanthemopsis alpina (L.) Heywood was incorporated into the soil at sites that have been free from ice for approximately 10, 60, 100 and more than 700 years. The structure and function of microbial communities were identified by 13C analysis of phospholipid fatty acids (PLFA) and phospholipid ether lipids (PLEL). Results showed increasing microbial diversity and biomass, and enhanced proliferation of bacterial groups as ecosystem development progressed. Initially, litter decomposition proceeded faster at the more developed sites, but at the end of the experiment loss of litter mass was similar at all sites, once the more easily-degradable litter fraction was processed. As a result incorporation of 13C into microbial biomass was more evident during the first weeks of litter decomposition. 13C enrichments of both PLEL and PLFA biomarkers following litter incorporation were observed at all sites, suggesting similar microbial foodwebs at all stages of soil development. Nonetheless, the contribution of bacteria, especially actinomycetes to litter turnover became more pronounced as soil age increased in detriment of archaea, fungi and protozoa, more prominent in recently deglaciated terrain.

  10. Bioaccumulation Dynamics of Arsenate at the Base of Aquatic Food Webs.

    PubMed

    Lopez, Adeline R; Hesterberg, Dean R; Funk, David H; Buchwalter, David B

    2016-06-21

    Periphyton is an important food source at the base of freshwater ecosystems that tends to bioconcentrate trace elements making them trophically available. The potential for arsenic-a trace element of particular concern due to its widespread occurrence, toxicity, and carcinogenicity-to bioconcentrate in periphyton and thus be available to benthic grazers is less well characterized. To better understand arsenate bioaccumulation dynamics in lotic food webs, we used a radiotracer approach to characterize accumulation in periphyton and subsequent trophic transfer to benthic grazers. Periphyton bioconcentrated As between 3,200-9,700-fold (dry weight) over 8 days without reaching steady state, suggesting that periphyton is a major sink for arsenate. However, As-enriched periphyton as a food source for the mayfly Neocloeon triangulifer resulted in negligible As accumulation in a full lifecycle exposure. Additional studies estimate dietary assimilation efficiency in several primary consumers ranging from 22% in the mayfly N. triangulifer to 75% in the mayfly Isonychia sp. X-ray fluorescence mapping revealed that As was predominantly associated with iron oxides in periphyton. We speculate that As adsorption to Fe in periphyton may play a role in reducing dietary bioavailability. Together, these results suggest that trophic movement of As in lotic food webs is relatively low, though species differences in bioaccumulation patterns are important. PMID:27223406

  11. Development of a dynamic model for estimating the food web transfer of chemicals in small aquatic ecosystems.

    PubMed

    Nfon, Erick; Armitage, James M; Cousins, Ian T

    2011-11-15

    A dynamic combined fate and food web model was developed to estimate the food web transfer of chemicals in small aquatic ecosystems (i.e. ponds). A novel feature of the modeling approach is that aquatic macrophytes (submerged aquatic vegetation) were included in the fate model and were also a food item in the food web model. The paper aims to investigate whether macrophytes are effective at mitigating chemical exposure and to compare the modeling approach developed here with previous modeling approaches recommended in the European Union (EU) guideline for risk assessment of pesticides. The model was used to estimate bioaccumulation of three hypothetical chemicals of varying hydrophobicity in a pond food web comprising 11 species. Three different macrophyte biomass densities were simulated in the model experiments to determine the influence of macrophytes on fate and bioaccumulation. Macrophytes were shown to have a significant effect on the fate and food web transfer of highly hydrophobic compounds with log KOW>=5. Modeled peak concentrations in biota were highest for the scenarios with the lowest macrophyte biomass density. The distribution and food web transfer of the hypothetical compound with the lowest hydrophobicity (log KOW=3) was not affected by the inclusion of aquatic macrophytes in the pond environment. For the three different hypothetical chemicals and at all macrophyte biomass densities, the maximum predicted concentrations in the top predator in the food web model were at least one order of magnitude lower than the values estimated using methods suggested in EU guidelines. The EU guideline thus provides a highly conservative estimate of risk. In our opinion, and subject to further model evaluation, a realistic assessment of dynamic food web transfer and risk can be obtained using the model presented here. PMID:21962596

  12. Atlas of the Cryosphere: A Dynamic Web Mapping Tool for Exploring the Cryosphere

    NASA Astrophysics Data System (ADS)

    Maurer, J.; Sheffield, E. M.

    2006-12-01

    The National Snow and Ice Data Center (NSIDC) recently released its "Atlas of the Cryosphere," a user- friendly, dynamic web mapping site that allows the visitor to explore and interact with the frozen regions of Earth. Viewed from a polar perspective, information that can be displayed includes snow cover, sea ice extent, glacier outlines, permafrost, and other critical components of the Earth's cryosphere. The user can zoom in to a specific region on the Earth, overlay country borders, see where the poles are and where the Arctic Circle lies, etc. The map that the user creates can then be saved as an image for easy use in reports and assignments. This site should act as a useful tool in education efforts surrounding the International Polar Year (IPY), providing at a glance the geographical setting for snow and ice on the planet.

  13. Phytoplankton Chytridiomycosis: Fungal Parasites of Phytoplankton and Their Imprints on the Food Web Dynamics

    PubMed Central

    Sime-Ngando, Télesphore

    2012-01-01

    Parasitism is one of the earlier and common ecological interactions in the nature, occurring in almost all environments. Microbial parasites typically are characterized by their small size, short generation time, and high rates of reproduction, with simple life cycle occurring generally within a single host. They are diverse and ubiquitous in aquatic ecosystems, comprising viruses, prokaryotes, and eukaryotes. Recently, environmental 18S rDNA surveys of microbial eukaryotes have unveiled major infecting agents in pelagic systems, consisting primarily of the fungal order of Chytridiales (chytrids). Chytrids are considered the earlier branch of the Eumycetes and produce motile, flagellated zoospores, characterized by a small size (2–6 μm), and a single, posterior flagellum. The existence of these dispersal propagules includes chytrids within the so-called group of zoosporic fungi, which are particularly adapted to the plankton lifestyle where they infect a wide variety of hosts, including fishes, eggs, zooplankton, algae, and other aquatic fungi but primarily freshwater phytoplankton. Related ecological implications are huge because chytrids can killed their hosts, release substrates for microbial processes, and provide nutrient-rich particles as zoospores and short fragments of filamentous inedible hosts for the grazer food chain. Furthermore, based on the observation that phytoplankton chytridiomycosis preferentially impacts the larger size species, blooms of such species (e.g., filamentous cyanobacteria) may not totally represent trophic bottlenecks. Besides, chytrid epidemics represent an important driving factor in phytoplankton seasonal successions. In this review, I summarize the knowledge on the diversity, community structure, quantitative importance, and functional roles of fungal chytrids, primarily those who are parasites of phytoplankton, and infer the ecological implications and potentials for the food web dynamics and properties. I reach the

  14. Phytoplankton chytridiomycosis: fungal parasites of phytoplankton and their imprints on the food web dynamics.

    PubMed

    Sime-Ngando, Télesphore

    2012-01-01

    Parasitism is one of the earlier and common ecological interactions in the nature, occurring in almost all environments. Microbial parasites typically are characterized by their small size, short generation time, and high rates of reproduction, with simple life cycle occurring generally within a single host. They are diverse and ubiquitous in aquatic ecosystems, comprising viruses, prokaryotes, and eukaryotes. Recently, environmental 18S rDNA surveys of microbial eukaryotes have unveiled major infecting agents in pelagic systems, consisting primarily of the fungal order of Chytridiales (chytrids). Chytrids are considered the earlier branch of the Eumycetes and produce motile, flagellated zoospores, characterized by a small size (2-6 μm), and a single, posterior flagellum. The existence of these dispersal propagules includes chytrids within the so-called group of zoosporic fungi, which are particularly adapted to the plankton lifestyle where they infect a wide variety of hosts, including fishes, eggs, zooplankton, algae, and other aquatic fungi but primarily freshwater phytoplankton. Related ecological implications are huge because chytrids can killed their hosts, release substrates for microbial processes, and provide nutrient-rich particles as zoospores and short fragments of filamentous inedible hosts for the grazer food chain. Furthermore, based on the observation that phytoplankton chytridiomycosis preferentially impacts the larger size species, blooms of such species (e.g., filamentous cyanobacteria) may not totally represent trophic bottlenecks. Besides, chytrid epidemics represent an important driving factor in phytoplankton seasonal successions. In this review, I summarize the knowledge on the diversity, community structure, quantitative importance, and functional roles of fungal chytrids, primarily those who are parasites of phytoplankton, and infer the ecological implications and potentials for the food web dynamics and properties. I reach the

  15. Peer Interactions in a Computer Lab: Reflections on Results of a Case Study Involving Web-Based Dynamic Geometry Sketches

    ERIC Educational Resources Information Center

    Sinclair, Margaret P.

    2005-01-01

    A case study, originally set up to identify and describe some benefits and limitations of using dynamic web-based geometry sketches, provided an opportunity to examine peer interactions in a lab. Since classes were held in a computer lab, teachers and pairs faced the challenges of working and communicating in a lab environment. Research has shown…

  16. Next Generation Online: Advancing Learning through Dynamic Design, Virtual and Web 2.0 Technologies, and Instructor "Attitude"

    ERIC Educational Resources Information Center

    O'Connor, Eileen

    2013-01-01

    With the advent of web 2.0 and virtual technologies and new understandings about learning within a global, networked environment, online course design has moved beyond the constraints of text readings, papers, and discussion boards. This next generation of online courses needs to dynamically and actively integrate the wide-ranging distribution of…

  17. Do-It-Yourself: A Special Library's Approach to Creating Dynamic Web Pages Using Commercial Off-The-Shelf Applications

    NASA Technical Reports Server (NTRS)

    Steeman, Gerald; Connell, Christopher

    2000-01-01

    Many librarians may feel that dynamic Web pages are out of their reach, financially and technically. Yet we are reminded in library and Web design literature that static home pages are a thing of the past. This paper describes how librarians at the Institute for Defense Analyses (IDA) library developed a database-driven, dynamic intranet site using commercial off-the-shelf applications. Administrative issues include surveying a library users group for interest and needs evaluation; outlining metadata elements; and, committing resources from managing time to populate the database and training in Microsoft FrontPage and Web-to-database design. Technical issues covered include Microsoft Access database fundamentals, lessons learned in the Web-to-database process (including setting up Database Source Names (DSNs), redesigning queries to accommodate the Web interface, and understanding Access 97 query language vs. Standard Query Language (SQL)). This paper also offers tips on editing Active Server Pages (ASP) scripting to create desired results. A how-to annotated resource list closes out the paper.

  18. Watershed Dynamics: Using Web-based GIS to Access Data and Study the Hydrosphere

    NASA Astrophysics Data System (ADS)

    Buzby, C. K.; Jona, K.

    2010-12-01

    The Watershed Dynamics project has developed online GIS tools and curriculum to provide high school earth science students with access to data and analysis tools to perform investigations on their local watershed. Using FieldScope web-based GIS tools from National Geographic, students investigate precipitation, stream discharge, and land cover data for the US. Students use the data to study water availability across the US and the world, human impacts on the watershed, and more. Curriculum developers at the Office of STEM Education Partnerships (OSEP) at Northwestern University and the GLOBE Program have created two complete units which scaffold students on their way to independent research using GIS. In the Water Availability unit, students work with precipitation, evaporation, and surface runoff to investigate the water cycle and how it varies regionally and seasonally. In the Human Impact unit, students analyze land cover change over time and investigate stream discharge to figure out how humans are impacting their watershed. These units can be used together or individually, but provide students progressively more research independence, leading them to ask their own questions about the watershed using GIS data. Both units have been pilot tested in high school classrooms and found to be successful at increasing student content knowledge about the water cycle. They are being modified for use at the undergraduate level. The web-based GIS interface has the functionality of desktop GIS, but allows for a simpler user-experience and direct links to relevant data. Students can use these tools to learn scientific content and as a stepping-stone for further GIS investigations.

  19. Modeling of fluid injection and withdrawal induced fault activation using discrete element based hydro-mechanical and dynamic coupled simulator

    NASA Astrophysics Data System (ADS)

    Yoon, Jeoung Seok; Zang, Arno; Zimmermann, Günter; Stephansson, Ove

    2016-04-01

    Operation of fluid injection into and withdrawal from the subsurface for various purposes has been known to induce earthquakes. Such operations include hydraulic fracturing for shale gas extraction, hydraulic stimulation for Enhanced Geothermal System development and waste water disposal. Among these, several damaging earthquakes have been reported in the USA in particular in the areas of high-rate massive amount of wastewater injection [1] mostly with natural fault systems. Oil and gas production have been known to induce earthquake where pore fluid pressure decreases in some cases by several tens of Mega Pascal. One recent seismic event occurred in November 2013 near Azle, Texas where a series of earthquakes began along a mapped ancient fault system [2]. It was studied that a combination of brine production and waste water injection near the fault generated subsurface pressures sufficient to induced earthquakes on near-critically stressed faults. This numerical study aims at investigating the occurrence mechanisms of such earthquakes induced by fluid injection [3] and withdrawal by using hydro-geomechanical coupled dynamic simulator (Itasca's Particle Flow Code 2D). Generic models are setup to investigate the sensitivity of several parameters which include fault orientation, frictional properties, distance from the injection well to the fault, amount of fluid withdrawal around the injection well, to the response of the fault systems and the activation magnitude. Fault slip movement over time in relation to the diffusion of pore pressure is analyzed in detail. Moreover, correlations between the spatial distribution of pore pressure change and the locations of induced seismic events and fault slip rate are investigated. References [1] Keranen KM, Weingarten M, Albers GA, Bekins BA, Ge S, 2014. Sharp increase in central Oklahoma seismicity since 2008 induced by massive wastewater injection, Science 345, 448, DOI: 10.1126/science.1255802. [2] Hornbach MJ, DeShon HR

  20. Visinets: A Web-Based Pathway Modeling and Dynamic Visualization Tool

    PubMed Central

    Spychala, Pawel; Gomez, Shawn

    2015-01-01

    In this report we describe a novel graphically oriented method for pathway modeling and a software package that allows for both modeling and visualization of biological networks in a user-friendly format. The Visinets mathematical approach is based on causal mapping (CMAP) that has been fully integrated with graphical interface. Such integration allows for fully graphical and interactive process of modeling, from building the network to simulation of the finished model. To test the performance of Visinets software we have applied it to: a) create executable EGFR-MAPK pathway model using an intuitive graphical way of modeling based on biological data, and b) translate existing ordinary differential equation (ODE) based insulin signaling model into CMAP formalism and compare the results. Our testing fully confirmed the potential of the CMAP method for broad application for pathway modeling and visualization and, additionally, showed significant advantage in computational efficiency. Furthermore, we showed that Visinets web-based graphical platform, along with standardized method of pathway analysis, may offer a novel and attractive alternative for dynamic simulation in real time for broader use in biomedical research. Since Visinets uses graphical elements with mathematical formulas hidden from the users, we believe that this tool may be particularly suited for those who are new to pathway modeling and without the in-depth modeling skills often required when using other software packages. PMID:26020230

  1. Visinets: a web-based pathway modeling and dynamic visualization tool.

    PubMed

    Spychala, Jozef; Spychala, Pawel; Gomez, Shawn; Weinreb, Gabriel E

    2015-01-01

    In this report we describe a novel graphically oriented method for pathway modeling and a software package that allows for both modeling and visualization of biological networks in a user-friendly format. The Visinets mathematical approach is based on causal mapping (CMAP) that has been fully integrated with graphical interface. Such integration allows for fully graphical and interactive process of modeling, from building the network to simulation of the finished model. To test the performance of Visinets software we have applied it to: a) create executable EGFR-MAPK pathway model using an intuitive graphical way of modeling based on biological data, and b) translate existing ordinary differential equation (ODE) based insulin signaling model into CMAP formalism and compare the results. Our testing fully confirmed the potential of the CMAP method for broad application for pathway modeling and visualization and, additionally, showed significant advantage in computational efficiency. Furthermore, we showed that Visinets web-based graphical platform, along with standardized method of pathway analysis, may offer a novel and attractive alternative for dynamic simulation in real time for broader use in biomedical research. Since Visinets uses graphical elements with mathematical formulas hidden from the users, we believe that this tool may be particularly suited for those who are new to pathway modeling and without the in-depth modeling skills often required when using other software packages. PMID:26020230

  2. A Decision Tool that Combines Discrete Event Software Process Models with System Dynamics Pieces for Software Development Cost Estimation and Analysis

    NASA Technical Reports Server (NTRS)

    Mizell, Carolyn Barrett; Malone, Linda

    2007-01-01

    The development process for a large software development project is very complex and dependent on many variables that are dynamic and interrelated. Factors such as size, productivity and defect injection rates will have substantial impact on the project in terms of cost and schedule. These factors can be affected by the intricacies of the process itself as well as human behavior because the process is very labor intensive. The complex nature of the development process can be investigated with software development process models that utilize discrete event simulation to analyze the effects of process changes. The organizational environment and its effects on the workforce can be analyzed with system dynamics that utilizes continuous simulation. Each has unique strengths and the benefits of both types can be exploited by combining a system dynamics model and a discrete event process model. This paper will demonstrate how the two types of models can be combined to investigate the impacts of human resource interactions on productivity and ultimately on cost and schedule.

  3. GEO Label Web Services for Dynamic and Effective Communication of Geospatial Metadata Quality

    NASA Astrophysics Data System (ADS)

    Lush, Victoria; Nüst, Daniel; Bastin, Lucy; Masó, Joan; Lumsden, Jo

    2014-05-01

    We present demonstrations of the GEO label Web services and their integration into a prototype extension of the GEOSS portal (http://scgeoviqua.sapienzaconsulting.com/web/guest/geo_home), the GMU portal (http://gis.csiss.gmu.edu/GADMFS/) and a GeoNetwork catalog application (http://uncertdata.aston.ac.uk:8080/geonetwork/srv/eng/main.home). The GEO label is designed to communicate, and facilitate interrogation of, geospatial quality information with a view to supporting efficient and effective dataset selection on the basis of quality, trustworthiness and fitness for use. The GEO label which we propose was developed and evaluated according to a user-centred design (UCD) approach in order to maximise the likelihood of user acceptance once deployed. The resulting label is dynamically generated from producer metadata in ISO or FDGC format, and incorporates user feedback on dataset usage, ratings and discovered issues, in order to supply a highly informative summary of metadata completeness and quality. The label was easily incorporated into a community portal as part of the GEO Architecture Implementation Programme (AIP-6) and has been successfully integrated into a prototype extension of the GEOSS portal, as well as the popular metadata catalog and editor, GeoNetwork. The design of the GEO label was based on 4 user studies conducted to: (1) elicit initial user requirements; (2) investigate initial user views on the concept of a GEO label and its potential role; (3) evaluate prototype label visualizations; and (4) evaluate and validate physical GEO label prototypes. The results of these studies indicated that users and producers support the concept of a label with drill-down interrogation facility, combining eight geospatial data informational aspects, namely: producer profile, producer comments, lineage information, standards compliance, quality information, user feedback, expert reviews, and citations information. These are delivered as eight facets of a wheel

  4. A Web Portal-Based Time-Aware KML Animation Tool for Exploring Spatiotemporal Dynamics of Hydrological Events

    NASA Astrophysics Data System (ADS)

    Bao, X.; Cai, X.; Liu, Y.

    2009-12-01

    Understanding spatiotemporal dynamics of hydrological events such as storms and droughts is highly valuable for decision making on disaster mitigation and recovery. Virtual Globe-based technologies such as Google Earth and Open Geospatial Consortium KML standards show great promises for collaborative exploration of such events using visual analytical approaches. However, currently there are two barriers for wider usage of such approaches. First, there lacks an easy way to use open source tools to convert legacy or existing data formats such as shapefiles, geotiff, or web services-based data sources to KML and to produce time-aware KML files. Second, an integrated web portal-based time-aware animation tool is currently not available. Thus users usually share their files in the portal but have no means to visually explore them without leaving the portal environment which the users are familiar with. We develop a web portal-based time-aware KML animation tool for viewing extreme hydrologic events. The tool is based on Google Earth JavaScript API and Java Portlet standard 2.0 JSR-286, and it is currently deployable in one of the most popular open source portal frameworks, namely Liferay. We have also developed an open source toolkit kml-soc-ncsa (http://code.google.com/p/kml-soc-ncsa/) to facilitate the conversion of multiple formats into KML and the creation of time-aware KML files. We illustrate our tool using some example cases, in which drought and storm events with both time and space dimension can be explored in this web-based KML animation portlet. The tool provides an easy-to-use web browser-based portal environment for multiple users to collaboratively share and explore their time-aware KML files as well as improving the understanding of the spatiotemporal dynamics of the hydrological events.

  5. Discrete Newtonian cosmology: perturbations

    NASA Astrophysics Data System (ADS)

    Ellis, George F. R.; Gibbons, Gary W.

    2015-03-01

    In a previous paper (Gibbons and Ellis 2014 Discrete Newtonian cosmology Class. Quantum Grav. 31 025003), we showed how a finite system of discrete particles interacting with each other via Newtonian gravitational attraction would lead to precisely the same dynamical equations for homothetic motion as in the case of the pressure-free Friedmann-Lemaître-Robertson-Walker cosmological models of general relativity theory, provided the distribution of particles obeys the central configuration equation. In this paper we show that one can obtain perturbed such Newtonian solutions that give the same linearized structure growth equations as in the general relativity case. We also obtain the Dmitriev-Zel’dovich equations for subsystems in this discrete gravitational model, and show how it leads to the conclusion that voids have an apparent negative mass.

  6. Methylation plotter: a web tool for dynamic visualization of DNA methylation data

    PubMed Central

    2014-01-01

    Methylation plotter is a Web tool that allows the visualization of methylation data in a user-friendly manner and with publication-ready quality. The user is asked to introduce a file containing the methylation status of a genomic region. This file can contain up to 100 samples and 100 CpGs. Optionally, the user can assign a group for each sample (i.e. whether a sample is a tumoral or normal tissue). After the data upload, the tool produces different graphical representations of the results following the most commonly used styles to display this type of data. They include an interactive plot that summarizes the status of every CpG site and for every sample in lollipop or grid styles. Methylation values ranging from 0 (unmethylated) to 1 (fully methylated) are represented using a gray color gradient. A practical feature of the tool allows the user to choose from different types of arrangement of the samples in the display: for instance, sorting by overall methylation level, by group, by unsupervised clustering or just following the order in which data were entered. In addition to the detailed plot, Methylation plotter produces a methylation profile plot that summarizes the status of the scrutinized region, a boxplot that sums up the differences between groups (if any) and a dendrogram that classifies the data by unsupervised clustering. Coupled with this analysis, descriptive statistics and testing for differences at both CpG and group levels are provided. The implementation is based in R/shiny, providing a highly dynamic user interface that generates quality graphics without the need of writing R code. Methylation plotter is freely available at http://gattaca.imppc.org:3838/methylation_plotter/. PMID:25260021

  7. Methylation plotter: a web tool for dynamic visualization of DNA methylation data.

    PubMed

    Mallona, Izaskun; Díez-Villanueva, Anna; Peinado, Miguel A

    2014-01-01

    Methylation plotter is a Web tool that allows the visualization of methylation data in a user-friendly manner and with publication-ready quality. The user is asked to introduce a file containing the methylation status of a genomic region. This file can contain up to 100 samples and 100 CpGs. Optionally, the user can assign a group for each sample (i.e. whether a sample is a tumoral or normal tissue). After the data upload, the tool produces different graphical representations of the results following the most commonly used styles to display this type of data. They include an interactive plot that summarizes the status of every CpG site and for every sample in lollipop or grid styles. Methylation values ranging from 0 (unmethylated) to 1 (fully methylated) are represented using a gray color gradient. A practical feature of the tool allows the user to choose from different types of arrangement of the samples in the display: for instance, sorting by overall methylation level, by group, by unsupervised clustering or just following the order in which data were entered. In addition to the detailed plot, Methylation plotter produces a methylation profile plot that summarizes the status of the scrutinized region, a boxplot that sums up the differences between groups (if any) and a dendrogram that classifies the data by unsupervised clustering. Coupled with this analysis, descriptive statistics and testing for differences at both CpG and group levels are provided. The implementation is based in R/shiny, providing a highly dynamic user interface that generates quality graphics without the need of writing R code. Methylation plotter is freely available at http://gattaca.imppc.org:3838/methylation_plotter/. PMID:25260021

  8. Dynamical Approach Study of Spurious Steady-State Numerical Solutions of Nonlinear Differential Equations. Part 2; Global Asymptotic Behavior of Time Discretizations

    NASA Technical Reports Server (NTRS)

    Yee, H. C.; Sweby, P. K.

    1995-01-01

    The global asymptotic nonlinear behavior of 11 explicit and implicit time discretizations for four 2 x 2 systems of first-order autonomous nonlinear ordinary differential equations (ODEs) is analyzed. The objectives are to gain a basic understanding of the difference in the dynamics of numerics between the scalars and systems of nonlinear autonomous ODEs and to set a baseline global asymptotic solution behavior of these schemes for practical computations in computational fluid dynamics. We show how 'numerical' basins of attraction can complement the bifurcation diagrams in gaining more detailed global asymptotic behavior of time discretizations for nonlinear differential equations (DEs). We show how in the presence of spurious asymptotes the basins of the true stable steady states can be segmented by the basins of the spurious stable and unstable asymptotes. One major consequence of this phenomenon which is not commonly known is that this spurious behavior can result in a dramatic distortion and, in most cases, a dramatic shrinkage and segmentation of the basin of attraction of the true solution for finite time steps. Such distortion, shrinkage and segmentation of the numerical basins of attraction will occur regardless of the stability of the spurious asymptotes, and will occur for unconditionally stable implicit linear multistep methods. In other words, for the same (common) steady-state solution the associated basin of attraction of the DE might be very different from the discretized counterparts and the numerical basin of attraction can be very different from numerical method to numerical method. The results can be used as an explanation for possible causes of error, and slow convergence and nonconvergence of steady-state numerical solutions when using the time-dependent approach for nonlinear hyperbolic or parabolic PDEs.

  9. The application of co-ordination dynamics to the analysis of discrete movements using table-tennis as a paradigm skill.

    PubMed

    Sørensen, V; Ingvaldsen, R P; Whiting, H T

    2001-07-01

    The purpose of this experiment was to explore the application of co-ordination dynamics to the analysis of discrete rather than cyclical movements. Subjects, standing in a fixed position, were required to return table-tennis balls delivered to different spatial locations in the direction of a fixed target. This was achieved in condition 1 by systematically scaling, from left to right and vice versa, the 'spatial location' of the ball-identified as a control parameter. In condition 2, the control condition, the spatial location was varied randomly over the same range. The changes between regimes of the stroke co-ordination pattern, defined at two different levels, (1) organisational--forehand or backhand drive. and (2) kinematic-the distance of the bat at ball-bat contact relative to the leading edge of the table, were identified as collective variables, the values of which changed spontaneously at the transition points exposed by the control parameter. The switch between regimes was shown to be dependent upon the direction of scaling, i.e. a hysteresis effect was identified in both conditions. These findings confirm that the conceptual and methodological frameworks of co-ordination dynamics can be applied, appropriately, to the analysis of discrete movements. Moreover, it would seem that control parameter values (spatial location of the ball) do not necessarily have to be scaled in a systematic way in order to produce the required effects. PMID:11471838

  10. Online optimal control of affine nonlinear discrete-time systems with unknown internal dynamics by using time-based policy update.

    PubMed

    Dierks, Travis; Jagannathan, Sarangapani

    2012-07-01

    In this paper, the Hamilton-Jacobi-Bellman equation is solved forward-in-time for the optimal control of a class of general affine nonlinear discrete-time systems without using value and policy iterations. The proposed approach, referred to as adaptive dynamic programming, uses two neural networks (NNs), to solve the infinite horizon optimal regulation control of affine nonlinear discrete-time systems in the presence of unknown internal dynamics and a known control coefficient matrix. One NN approximates the cost function and is referred to as the critic NN, while the second NN generates the control input and is referred to as the action NN. The cost function and policy are updated once at the sampling instant and thus the proposed approach can be referred to as time-based ADP. Novel update laws for tuning the unknown weights of the NNs online are derived. Lyapunov techniques are used to show that all signals are uniformly ultimately bounded and that the approximated control signal approaches the optimal control input with small bounded error over time. In the absence of disturbances, an optimal control is demonstrated. Simulation results are included to show the effectiveness of the approach. The end result is the systematic design of an optimal controller with guaranteed convergence that is suitable for hardware implementation. PMID:24807137

  11. Multi-layer Parallel Beta-Sheet Structure of Amyloid Beta peptide (1-40) aggregate observed by discrete molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Peng, Shouyong; Urbanc, Brigita; Ding, Feng; Cruz, Luis; Buldyrev, Sergey; Dokholyan, Nikolay; Stanley, H. E.

    2003-03-01

    New evidence shows that oligomeric forms of Amyloid-Beta are potent neurotoxins that play a major role in neurodegeneration of Alzheimer's disease. Detailed knowledge of the structure and assembly dynamics of Amyloid-Beta is important for the development of new therapeutic strategies. Here we apply a two-atom model with Go interactions to model aggregation of Amyloid-Beta (1-40) peptides using the discrete molecular dynamics simulation. At temperatures above the transition temperature from an alpha-helical to random coil, we obtain two types of parallel beta-sheet structures, (a) a helical beta-sheet structure at a lower temperature and (b) a parallel beta-sheet structure at a higher temperature, both with inter-sheet distance of 10 A and with free edges which possibly enable further fibrillar elongation.

  12. Forecast of spatially distributed runoff dynamics in the Finger Lakes region using an interactive web tool and Python

    NASA Astrophysics Data System (ADS)

    Dahlke, H. E.; Easton, Z. M.; Fuka, D. R.; Rao, N. S.; Steenhuis, T. S.

    2008-12-01

    To optimize NPS pollution reduction efficiency of Best Management Practices (BMPs) in NY State, various models have been developed that can effectively delineate runoff and contaminant source areas in the landscape. In the Finger Lakes region with shallow, permeable soils, underlain by a restricting layer, saturation excess runoff is the dominant mechanism of nutrient transport. In watersheds characterized by these conditions, runoff originates from areas in the landscape that expand and contract seasonally and are therefore often termed as variable source areas (VSAs). Hence, consideration should be given to the spatial distribution of VSA in the watershed during the planning process of BMPs. However, in practice the applied hydrological models often require extensive expertise and effort to be used on a routine basis for BMP planning. In order to simplify the BMP planning process, we developed an interactive web-based tool for Salmon Creek watershed, NY that locates VSA and calculates their probability of saturation. The interactive web tool incorporates hydrologic, geographic and land management information in an ESRI ArcIMS framework and presents the resulting VSA maps online. For the web tool we developed a Python-based application that calculates the surface runoff potential of the 230 km2 Salmon Creek watershed on the basis of a water balance model and free precipitation and temperature data from the National Climatic Data Center. Areas of high surface runoff potential are distributed via a soil topographic index to capture VSA dynamics. Further, the application is used to calculate a one to two day prediction of the spatial extent of VSA using free web- provided weather forecasts. The web tool is designed to interactively assist planners and especially farmers in the BMP planning process on a simplified expertise level. It can be used on a daily basis to locate fields with low runoff risk that could, potentially receive more liberal nutrient applications

  13. Microscopic derivation of discrete hydrodynamics.

    PubMed

    Español, Pep; Anero, Jesús G; Zúñiga, Ignacio

    2009-12-28

    By using the standard theory of coarse graining based on Zwanzig's projection operator, we derive the dynamic equations for discrete hydrodynamic variables. These hydrodynamic variables are defined in terms of the Delaunay triangulation. The resulting microscopically derived equations can be understood, a posteriori, as a discretization on an arbitrary irregular grid of the Navier-Stokes equations. The microscopic derivation provides a set of discrete equations that exactly conserves mass, momentum, and energy and the dissipative part of the dynamics produces strict entropy increase. In addition, the microscopic derivation provides a practical implementation of thermal fluctuations in a way that the fluctuation-dissipation theorem is satisfied exactly. This paper points toward a close connection between coarse-graining procedures from microscopic dynamics and discretization schemes for partial differential equations. PMID:20059064

  14. Using Innovative Outliers to Detect Discrete Shifts in Dynamics in Group-Based State-Space Models

    ERIC Educational Resources Information Center

    Chow, Sy-Miin; Hamaker, Ellen L.; Allaire, Jason C.

    2009-01-01

    Outliers are typically regarded as data anomalies that should be discarded. However, dynamic or "innovative" outliers can be appropriately utilized to capture unusual but substantively meaningful shifts in a system's dynamics. We extend De Jong and Penzer's 1998 approach for representing outliers in single-subject state-space models to a…

  15. Observer-based consensus in networks of discrete-time switched linear dynamics under a fixed topology

    NASA Astrophysics Data System (ADS)

    Xin, Youming; Li, Yuxia

    2016-09-01

    This paper considers the consensus problem of discrete-time switched linear multi-agent systems under a fixed communication topology. An observer-based protocol with sampled data is proposed for solving such a problem. Assume that the digraph has a directed spanning tree and that all switched subsystem of each agent are stabilisable and detectable. It is shown that the proposed protocol solves the consensus problem when the sampling period is sufficiently small and the average dwell time of the switching signal is sufficiently large. Moreover, to reduce the conservatism, a sufficient condition for consensus is obtained to design the feedback gain matrices and the observer gain matrices by linear matrix inequalities, which guarantee that consensus can be achieved when the sampling period and the average dwell time are in the general case. Finally, the effectiveness of the theoretical results is demonstrated through an example.

  16. Dynamical Behavior of Discrete Bubble and Heat Transfer of Nucleate Pool Boiling in Short-Term Microgravity

    NASA Astrophysics Data System (ADS)

    Zhao, Jian-Fu

    2012-07-01

    Boiling in microgravity is an increasing significant subject of investigation. Motivation for the study comes not only from many potential space applications due to its high efficiency to transfer high heat flux with liquid-vapor phase change, but also from powerful platform of microgravity to reveal the mechanism of heat transfer underneath the phenomenon of boiling. In the present paper, the growth of a discrete bubble during nucleate pool boiling and heat transfer in short-term microgravity is studied experimentally utilizing the drop tower Beijing. A P-doped N-type square silicon chip with the dimensions of 10x10x0.5 mm ^{3} was used as the heater. Two 0.25-mm diameters copper wires for power supply was soldered to the side surfaces of the chip at the opposite ends. The normal resistant of the chip is 75 Ω. The chip was heated by using Joule effect. A D.C. power supply of constant current was used to input energy to the heater element. A 0.12-mm diameter, T-type thermocouple adhered on the centre of the backside of the chip was used for the measurement of wall temperature, while two other T-type thermocouples were used for the bulk liquid temperature. FC-72 was used as working fluid. The concentration of air was determined by using Henry law as 0.0046 moles gas/mole liquid. The pressure and the bulk liquid temperature in the boiling chamber were nominally 102.0 kPa and 12.0 °C, respectively. The shapes of the bubbles were recorded using a high speed camera at a speed of 250 fps with a shutter speed of 1/2000 s. Based on the image manipulation, the effective diameter of the discrete bubble is obtained. The experiments were conducted utilizing the drop tower Beijing, which can provide a short-term microgravity condition. The residual gravity of 10 ^{-2 ... -3} g _{0} can be maintained throughout the short duration of 3.6 s. To avoid the influence of natural convection in normal gravity environment, the heating switched on at the release of the drop capsule

  17. Multiscale dynamics of biological cells with chemotactic interactions: From a discrete stochastic model to a continuous description

    NASA Astrophysics Data System (ADS)

    Alber, Mark; Chen, Nan; Glimm, Tilmann; Lushnikov, Pavel M.

    2006-05-01

    The cellular Potts model (CPM) has been used for simulating various biological phenomena such as differential adhesion, fruiting body formation of the slime mold Dictyostelium discoideum, angiogenesis, cancer invasion, chondrogenesis in embryonic vertebrate limbs, and many others. We derive a continuous limit of a discrete one-dimensional CPM with the chemotactic interactions between cells in the form of a Fokker-Planck equation for the evolution of the cell probability density function. This equation is then reduced to the classical macroscopic Keller-Segel model. In particular, all coefficients of the Keller-Segel model are obtained from parameters of the CPM. Theoretical results are verified numerically by comparing Monte Carlo simulations for the CPM with numerics for the Keller-Segel model.

  18. Permeability and kinetic coefficients for mesoscale BCF surface step dynamics: Discrete two-dimensional deposition-diffusion equation analysis

    DOE PAGESBeta

    Zhao, Renjie; Evans, James W.; Oliveira, Tiago J.

    2016-04-08

    Here, a discrete version of deposition-diffusion equations appropriate for description of step flow on a vicinal surface is analyzed for a two-dimensional grid of adsorption sites representing the stepped surface and explicitly incorporating kinks along the step edges. Model energetics and kinetics appropriately account for binding of adatoms at steps and kinks, distinct terrace and edge diffusion rates, and possible additional barriers for attachment to steps. Analysis of adatom attachment fluxes as well as limiting values of adatom densities at step edges for nonuniform deposition scenarios allows determination of both permeability and kinetic coefficients. Behavior of these quantities is assessedmore » as a function of key system parameters including kink density, step attachment barriers, and the step edge diffusion rate.« less

  19. Observability of discretized partial differential equations

    NASA Technical Reports Server (NTRS)

    Cohn, Stephen E.; Dee, Dick P.

    1988-01-01

    It is shown that complete observability of the discrete model used to assimilate data from a linear partial differential equation (PDE) system is necessary and sufficient for asymptotic stability of the data assimilation process. The observability theory for discrete systems is reviewed and applied to obtain simple observability tests for discretized constant-coefficient PDEs. Examples are used to show how numerical dispersion can result in discrete dynamics with multiple eigenvalues, thereby detracting from observability.

  20. Discrete-State Stochastic Models of Calcium-Regulated Calcium Influx and Subspace Dynamics Are Not Well-Approximated by ODEs That Neglect Concentration Fluctuations

    PubMed Central

    Weinberg, Seth H.; Smith, Gregory D.

    2012-01-01

    Cardiac myocyte calcium signaling is often modeled using deterministic ordinary differential equations (ODEs) and mass-action kinetics. However, spatially restricted “domains” associated with calcium influx are small enough (e.g., 10−17 liters) that local signaling may involve 1–100 calcium ions. Is it appropriate to model the dynamics of subspace calcium using deterministic ODEs or, alternatively, do we require stochastic descriptions that account for the fundamentally discrete nature of these local calcium signals? To address this question, we constructed a minimal Markov model of a calcium-regulated calcium channel and associated subspace. We compared the expected value of fluctuating subspace calcium concentration (a result that accounts for the small subspace volume) with the corresponding deterministic model (an approximation that assumes large system size). When subspace calcium did not regulate calcium influx, the deterministic and stochastic descriptions agreed. However, when calcium binding altered channel activity in the model, the continuous deterministic description often deviated significantly from the discrete stochastic model, unless the subspace volume is unrealistically large and/or the kinetics of the calcium binding are sufficiently fast. This principle was also demonstrated using a physiologically realistic model of calmodulin regulation of L-type calcium channels introduced by Yue and coworkers. PMID:23509597

  1. Impact of mercury contamination on the population dynamics of Peringia ulvae (Gastropoda): Implications on metal transfer through the trophic web

    NASA Astrophysics Data System (ADS)

    Cardoso, P. G.; Sousa, E.; Matos, P.; Henriques, B.; Pereira, E.; Duarte, A. C.; Pardal, M. A.

    2013-09-01

    The effects of mercury contamination on the population structure and dynamics of the gastropod Peringia ulvae (also known as Hydrobia ulvae) and its impact on the trophic web were assessed along a mercury gradient in Ria de Aveiro (Portugal). The gastropod was revealed to be a tolerant species to the contaminant, since the highest densities, biomasses and growth productivity values were recorded at the intermediate contaminated area followed by the most contaminated one and finally the least contaminated area. P. ulvae was however negatively affected by mercury in terms of growth and life span. So, in the most contaminated area the population was characterised mainly by the presence of juveniles and young individuals. The intermediate contaminated area showed a greater equilibrium in terms of groups' proportion, being the adults the dominant set. The least contaminated area presented intermediate values. P. ulvae life spans were shortest in the most contaminated area (7-8 mo), followed by the least contaminated area (10-11 mo) and finally, the intermediate one (11-14 mo). P. ulvae revealed to be an important vehicle of mercury transfer from sediments to the trophic web, incorporating approximately 15 g of Hg, annually, in the inner area of the Laranjo Bay (0.6 Km2). Therefore, despite P. ulvae being revealed to be not a good bio-indicator of mercury contamination, since it did not suffer profound modifications in its structure and functioning, it is a crucial element in the mercury biomagnification processes throughout the food web.

  2. Dispersal-mediated effect of microhabitat availability and density dependence determine population dynamics of a forest floor web spider.

    PubMed

    Takada, Mayura B; Miyashita, Tadashi

    2014-09-01

    Landscapes in nature can be viewed as a continuum of small total habitable area with high fragmentation to widely spreading habitats. The dispersal-mediated rescue effect predominates in the former landscapes, while classical density-dependent processes generally prevail in widely spread habitats. A similar principle should be applied to populations of organisms utilizing microhabitats in limited supply. To test this hypothesis, we examined the population dynamics of a web spider, Neriene brongersmai, in 16 populations with varying degrees of microhabitat availability, and we explored whether: (i) high microhabitat availability improves survival rate during density-independent movement, while the resultant high density reduces survival rate in a density-dependent manner; and (ii) temporal population stability increases with microhabitat availability at the population level. Furthermore, we conducted two types of field experiments to verify whether high microhabitat availability actually reduces mortality associated with web-site movement. Field observations revealed that demographic change in N. brongersmai populations was affected by three factors at different stages, namely the microhabitat limitation from the early to late juvenile stages, the density dependence from the late juvenile to adult stages and the food limitation from the adult to the next early juvenile stages. In addition, there was a tendency for a positive association between population stability and microhabitat availability at the population level. A small-scale experiment, where the frequency of spider web relocation was equalized artificially, revealed that high microhabitat availability elevated the survival rate during a movement event between web-sites. The larger spatiotemporal scale experiment also revealed an improved spider survival rate following treatment with high microhabitat availability, even though spider density was kept at a relatively low level. The population dynamics of N

  3. Discrete-Time Goldfishing

    NASA Astrophysics Data System (ADS)

    Calogero, Francesco

    2011-08-01

    The original continuous-time ''goldfish'' dynamical system is characterized by two neat formulas, the first of which provides the N Newtonian equations of motion of this dynamical system, while the second provides the solution of the corresponding initial-value problem. Several other, more general, solvable dynamical systems ''of goldfish type'' have been identified over time, featuring, in the right-hand (''forces'') side of their Newtonian equations of motion, in addition to other contributions, a velocity-dependent term such as that appearing in the right-hand side of the first formula mentioned above. The solvable character of these models allows detailed analyses of their behavior, which in some cases is quite remarkable (for instance isochronous or asymptotically isochronous). In this paper we introduce and discuss various discrete-time dynamical systems, which are as well solvable, which also display interesting behaviors (including isochrony and asymptotic isochrony) and which reduce to dynamical systems of goldfish type in the limit when the discrete-time independent variable l=0,1,2,... becomes the standard continuous-time independent variable t, 0≤t<∞.

  4. Weaving a Personal Web: Using Online Technologies to Create Customized, Connected, and Dynamic Learning Environments

    ERIC Educational Resources Information Center

    McElvaney, Jessica; Berge, Zane

    2009-01-01

    This paper explores how "personal web technologies" (PWTs) can be used by learners and the relationship between PWTs and connectivist learning principles. Descriptions and applications of several technologies including social bookmarking tools, personal publishing platforms, and aggregators are also included. With these tools, individuals can…

  5. SEASONAL DYNAMICS OF PCB ACCUMULATION IN A GREAT LAKES FOOD WEB. (R825151)

    EPA Science Inventory

    Seston, sediment, settling organic matter, and food web members were
    collected from Grand Traverse Bay, Lake Michigan, between April 1997 and
    September 1998 to examine PCB and toxaphene biomagnification. Stable isotopes of
    nitrogen and carbon were analyzed in sampl...

  6. From Static to Dynamic: Choosing and Implementing a Web-Based CMS

    ERIC Educational Resources Information Center

    Kneale, Ruth

    2008-01-01

    Working as systems librarian for the Advanced Technology Solar Telescope (ATST), a project for the National Solar Observatory (NSO) based in Tucson, Arizona, a large part of the author's responsibilities involve running the web site. She began looking into content management systems (CMSs), specifically ones for website control. A CMS is generally…

  7. Integrating discrete stochastic models and single-cell experiments to infer predictive models of MAPK-induced transcription dynamics

    NASA Astrophysics Data System (ADS)

    Munsky, Brian

    2015-03-01

    MAPK signal-activated transcription plays central roles in myriad biological processes including stress adaptation responses and cell fate decisions. Recent single-cell and single-molecule experiments have advanced our ability to quantify the spatial, temporal, and stochastic fluctuations for such signals and their downstream effects on transcription regulation. This talk explores how integrating such experiments with discrete stochastic computational analyses can yield quantitative and predictive understanding of transcription regulation in both space and time. We use single-molecule mRNA fluorescence in situ hybridization (smFISH) experiments to reveal locations and numbers of multiple endogenous mRNA species in 100,000's of individual cells, at different times and under different genetic and environmental perturbations. We use finite state projection methods to precisely and efficiently compute the full joint probability distributions of these mRNA, which capture measured spatial, temporal and correlative fluctuations. By combining these experimental and computational tools with uncertainty quantification, we systematically compare models of varying complexity and select those which give optimally precise and accurate predictions in new situations. We use these tools to explore two MAPK-activated gene regulation pathways. In yeast adaptation to osmotic shock, we analyze Hog1 kinase activation of transcription for three different genes STL1 (osmotic stress), CTT1 (oxidative stress) and HSP12 (heat shock). In human osteosarcoma cells under serum induction, we analyze ERK activation of c-Fos transcription.

  8. The formulation of dynamical contact problems with friction in the case of systems of rigid bodies and general discrete mechanical systems—Painlevé and Kane paradoxes revisited

    NASA Astrophysics Data System (ADS)

    Charles, Alexandre; Ballard, Patrick

    2016-08-01

    The dynamics of mechanical systems with a finite number of degrees of freedom (discrete mechanical systems) is governed by the Lagrange equation which is a second-order differential equation on a Riemannian manifold (the configuration manifold). The handling of perfect (frictionless) unilateral constraints in this framework (that of Lagrange's analytical dynamics) was undertaken by Schatzman and Moreau at the beginning of the 1980s. A mathematically sound and consistent evolution problem was obtained, paving the road for many subsequent theoretical investigations. In this general evolution problem, the only reaction force which is involved is a generalized reaction force, consistently with the virtual power philosophy of Lagrange. Surprisingly, such a general formulation was never derived in the case of frictional unilateral multibody dynamics. Instead, the paradigm of the Coulomb law applying to reaction forces in the real world is generally invoked. So far, this paradigm has only enabled to obtain a consistent evolution problem in only some very few specific examples and to suggest numerical algorithms to produce computational examples (numerical modeling). In particular, it is not clear what is the evolution problem underlying the computational examples. Moreover, some of the few specific cases in which this paradigm enables to write down a precise evolution problem are known to show paradoxes: the Painlevé paradox (indeterminacy) and the Kane paradox (increase in kinetic energy due to friction). In this paper, we follow Lagrange's philosophy and formulate the frictional unilateral multibody dynamics in terms of the generalized reaction force and not in terms of the real-world reaction force. A general evolution problem that governs the dynamics is obtained for the first time. We prove that all the solutions are dissipative; that is, this new formulation is free of Kane paradox. We also prove that some indeterminacy of the Painlevé paradox is fixed in this

  9. A Discrete Electromechanical Model for Human Cardiac Tissue: Effects of Stretch-Activated Currents and Stretch Conditions on Restitution Properties and Spiral Wave Dynamics

    PubMed Central

    Weise, Louis D.; Panfilov, Alexander V.

    2013-01-01

    We introduce an electromechanical model for human cardiac tissue which couples a biophysical model of cardiac excitation (Tusscher, Noble, Noble, Panfilov, 2006) and tension development (adjusted Niederer, Hunter, Smith, 2006 model) with a discrete elastic mass-lattice model. The equations for the excitation processes are solved with a finite difference approach, and the equations of the mass-lattice model are solved using Verlet integration. This allows the coupled problem to be solved with high numerical resolution. Passive mechanical properties of the mass-lattice model are described by a generalized Hooke's law for finite deformations (Seth material). Active mechanical contraction is initiated by changes of the intracellular calcium concentration, which is a variable of the electrical model. Mechanical deformation feeds back on the electrophysiology via stretch-activated ion channels whose conductivity is controlled by the local stretch of the medium. We apply the model to study how stretch-activated currents affect the action potential shape, restitution properties, and dynamics of spiral waves, under constant stretch, and dynamic stretch caused by active mechanical contraction. We find that stretch conditions substantially affect these properties via stretch-activated currents. In constantly stretched medium, we observe a substantial decrease in conduction velocity, and an increase of action potential duration; whereas, with dynamic stretch, action potential duration is increased only slightly, and the conduction velocity restitution curve becomes biphasic. Moreover, in constantly stretched medium, we find an increase of the core size and period of a spiral wave, but no change in rotation dynamics; in contrast, in the dynamically stretching medium, we observe spiral drift. Our results may be important to understand how altered stretch conditions affect the heart's functioning. PMID:23527160

  10. Discrete dynamical classes for galaxy discs and the implication of a second generation of Tully-Fisher methods

    NASA Astrophysics Data System (ADS)

    Roscoe, D. F.

    2002-04-01

    In Roscoe (\\cite{RoscoeA}), it was described how the modelling of a small sample of optical rotation curves (ORCs) given by Rubin et al. (\\cite{Rubin}) with the power-law Vrot=ARα, where where the parameters (A,alpha ) vary between galaxies, raised the hypothesis that the parameter A (considered in the form ln A) had a preference for certain discrete values. This specific hypothesis was tested in that paper against a sample of 900 spiral galaxy rotation curves measured by Mathewson et al. (\\cite{Mathewson1992}), but folded by Persic & Salucci (\\cite{Persic1995}), and was confirmed on this large sample with a conservatively estimated upper bound probability of 10-7 against it being a chance effect. In this paper, we begin by reviewing the earlier work, and then describe the analyses of three additional samples; the first of these, of 1200+ Southern sky ORCs, was published by Mathewson & Ford (\\cite{Mathewson1996}), the second, of 497 Northern sky ORCs, is a composite sample provided by kind permission of Giovanelli & Haynes published in the sequence of papers Dale et al. (\\cite{Dale1997}, \\cite{Dale1998}, \\cite{Dale1999}) and Dale & Uson (\\cite{Dale2000}), whilst the third, of 305 Northern sky ORCs, was published by Courteau (\\cite{Courteau}). These analyses provide overwhelmingly compelling confirmation of what was already a powerful result. Apart from other considerations, the results lead directly to what can be described as a ``second generation of Tully-Fisher methods''. We give a brief discussion of the further implications of the result.

  11. Structure and Dynamics of Experimentally Introduced and Naturally Occurring Laccaria sp. Discrete Genotypes in a Douglas Fir Plantation

    PubMed Central

    Selosse, Marc-André; Martin, Francis; Bouchard, Daniel; le Tacon, François

    1999-01-01

    Ectomycorrhizal fungi have been introduced in forest nurseries to improve seedling growth. Outplanting of inoculated seedlings to forest plantations raises the questions about inoculant persistence and its effects on indigenous fungal populations. We previously showed (M.-A. Selosse et al. Mol. Ecol. 7:561–573, 1998) that the American strain Laccaria bicolor S238N persisted 10 years after outplanting in a French Douglas fir plantation, without introgression or selfing and without fruiting on uninoculated adjacent plots. In the present study, the relevance of those results to sympatric strains was assessed for another part of the plantation, planted in 1985 with seedlings inoculated with the French strain L. bicolor 81306 or left uninoculated. About 720 Laccaria sp. sporophores, collected from 1994 to 1997, were typed by using randomly amplified polymorphic DNA markers and PCR amplification of the mitochondrial and nuclear ribosomal DNAs. All plots were colonized by small spontaneous discrete genotypes (genets). The inoculant strain 81306 abundantly fruited beneath inoculated trees, with possible introgression in indigenous Laccaria populations but without selfing. In contrast to our previous survey of L. bicolor S238N, L. bicolor 81306 colonized a plot of uninoculated trees. Meiotic segregation analysis verified that the invading genet was strain 81306 (P < 0.00058), implying a vegetative growth of 1.1 m · year−1. This plot was also invaded in 1998 by strain S238N used to inoculate other trees of the plantation. Five other uninoculated plots were free of these inoculant strains. The fate of inoculant strains thus depends less on their geographic origin than on unknown local factors. PMID:10223992

  12. Update on Small Modular Reactors Dynamic System Modeling Tool: Web Application

    SciTech Connect

    Hale, Richard Edward; Cetiner, Sacit M.; Fugate, David L.; Batteh, John J; Tiller, Michael M.

    2015-01-01

    Previous reports focused on the development of component and system models as well as end-to-end system models using Modelica and Dymola for two advanced reactor architectures: (1) Advanced Liquid Metal Reactor and (2) fluoride high-temperature reactor (FHR). The focus of this report is the release of the first beta version of the web-based application for model use and collaboration, as well as an update on the FHR model. The web-based application allows novice users to configure end-to-end system models from preconfigured choices to investigate the instrumentation and controls implications of these designs and allows for the collaborative development of individual component models that can be benchmarked against test systems for potential inclusion in the model library. A description of this application is provided along with examples of its use and a listing and discussion of all the models that currently exist in the library.

  13. Extinction Dynamics and Evolution of a Survivability-Based Multi-Level Food-Web Model

    NASA Astrophysics Data System (ADS)

    Berger, B. W.; Boulter, C. J.

    A multi-level evolution model where forced extinctions occur throughout the system based on a species fitness value (or survivability) is developed that is essentially the fusion of the evolution model of Bak and Sneppen and the food-web model of Amaral and Meyer. This model is found to describe the fossil record and behave as a self-organized critical system with a power law exponent of approximately 2, but is also found to be remarkably similar to a model that causes the forced extinctions randomly throughout the system. To explain this result we show that fitness is nearly randomly distributed with a slight peak in forced extinction (due to fitness) in the middle levels. These findings lend strong support to the hypothesis that coextinction effects (propagated through a food-web) provide a robust explanation of the fossil record, independent of the mechanism for species competition.

  14. On time discretizations for spectral methods. [numerical integration of Fourier and Chebyshev methods for dynamic partial differential equations

    NASA Technical Reports Server (NTRS)

    Gottlieb, D.; Turkel, E.

    1980-01-01

    New methods are introduced for the time integration of the Fourier and Chebyshev methods of solution for dynamic differential equations. These methods are unconditionally stable, even though no matrix inversions are required. Time steps are chosen by accuracy requirements alone. For the Fourier method both leapfrog and Runge-Kutta methods are considered. For the Chebyshev method only Runge-Kutta schemes are tested. Numerical calculations are presented to verify the analytic results. Applications to the shallow water equations are presented.

  15. Composition of Web Services Using Markov Decision Processes and Dynamic Programming

    PubMed Central

    Uc-Cetina, Víctor; Moo-Mena, Francisco; Hernandez-Ucan, Rafael

    2015-01-01

    We propose a Markov decision process model for solving the Web service composition (WSC) problem. Iterative policy evaluation, value iteration, and policy iteration algorithms are used to experimentally validate our approach, with artificial and real data. The experimental results show the reliability of the model and the methods employed, with policy iteration being the best one in terms of the minimum number of iterations needed to estimate an optimal policy, with the highest Quality of Service attributes. Our experimental work shows how the solution of a WSC problem involving a set of 100,000 individual Web services and where a valid composition requiring the selection of 1,000 services from the available set can be computed in the worst case in less than 200 seconds, using an Intel Core i5 computer with 6 GB RAM. Moreover, a real WSC problem involving only 7 individual Web services requires less than 0.08 seconds, using the same computational power. Finally, a comparison with two popular reinforcement learning algorithms, sarsa and Q-learning, shows that these algorithms require one or two orders of magnitude and more time than policy iteration, iterative policy evaluation, and value iteration to handle WSC problems of the same complexity. PMID:25874247

  16. Optimal Use of Data in Parallel Tempering Simulations for the Construction of Discrete-State Markov Models of Biomolecular Dynamics

    SciTech Connect

    Prinz, Jan-Hendrik; Chondera, John D; Pande, Vijay S; Swope, William C; Smith, Jeremy C; Noe, F

    2011-01-01

    Parallel tempering (PT) molecular dynamics simulations have been extensively investigated as a means of efficient sampling of the configurations of biomolecular systems. Recent work has demonstrated how the short physical trajectories generated in PT simulations of biomolecules can be used to construct the Markov models describing biomolecular dynamics at each simulated temperature. While this approach describes the temperature-dependent kinetics, it does not make optimal use of all available PT data, instead estimating the rates at a given temperature using only data from that temperature. This can be problematic, as some relevant transitions or states may not be sufficiently sampled at the temperature of interest, but might be readily sampled at nearby temperatures. Further, the comparison of temperature-dependent properties can suffer from the false assumption that data collected from different temperatures are uncorrelated. We propose here a strategy in which, by a simple modification of the PT protocol, the harvested trajectories can be reweighted, permitting data from all temperatures to contribute to the estimated kinetic model. The method reduces the statistical uncertainty in the kinetic model relative to the single temperature approach and provides estimates of transition probabilities even for transitions not observed at the temperature of interest. Further, the method allows the kinetics to be estimated at temperatures other than those at which simulations were run. We illustrate this method by applying it to the generation of a Markov model of the conformational dynamics of the solvated terminally blocked alanine peptide.

  17. A discrete chemo-dynamical model of the giant elliptical galaxy NGC 5846: dark matter fraction, internal rotation and velocity anisotropy out to six effective radii

    NASA Astrophysics Data System (ADS)

    Zhu, Ling; Romanowsky, Aaron J.; van de Ven, Glenn; Long, R. J.; Watkins, Laura L.; Pota, Vincenzo; Napolitano, Nicola R.; Forbes, Duncan A.; Brodie, Jean; Foster, Caroline

    2016-08-01

    We construct a suite of discrete chemo-dynamical models of the giant elliptical galaxy NGC 5846. These models are a powerful tool to constrain both the mass distribution and internal dynamics of multiple tracer populations. We use Jeans models to simultaneously fit stellar kinematics within the effective radius Re, planetary nebula (PN) radial velocities out to 3 Re, and globular cluster (GC) radial velocities and colours out to 6 Re. The best-fitting model is a cored DM halo which contributes ˜10% of the total mass within 1 Re, and 67% ± 10% within 6 Re, although a cusped DM halo is also acceptable. The red GCs exhibit mild rotation with vmax/σ0 ˜ 0.3 in the region R > Re, aligned with but counter-rotating to the stars in the inner parts, while the blue GCs and PNe kinematics are consistent with no rotation. The red GCs are tangentially anisotropic, the blue GCs are mildly radially anisotropic, and the PNe vary from radially to tangentially anisotropic from the inner to the outer region. This is confirmed by general made-to-measure models. The tangential anisotropy of the red GCs in the inner regions could stem from the preferential destruction of red GCs on more radial orbits, while their outer tangential anisotropy - similar to the PNe in this region - has no good explanation. The mild radial anisotropy of the blue GCs is consistent with an accretion scenario.

  18. Enabling the dynamic coupling between sensor web and Earth system models - The Self-Adaptive Earth Predictive Systems (SEPS) framework

    NASA Astrophysics Data System (ADS)

    di, L.; Yu, G.; Chen, N.

    2007-12-01

    The self-adaptation concept is the central piece of the control theory widely and successfully used in engineering and military systems. Such a system contains a predictor and a measurer. The predictor takes initial condition and makes an initial prediction and the measurer then measures the state of a real world phenomenon. A feedback mechanism is built in that automatically feeds the measurement back to the predictor. The predictor takes the measurement against the prediction to calculate the prediction error and adjust its internal state based on the error. Thus, the predictor learns from the error and makes a more accurate prediction in the next step. By adopting the self-adaptation concept, we proposed the Self-adaptive Earth Predictive System (SEPS) concept for enabling the dynamic coupling between the sensor web and the Earth system models. The concept treats Earth System Models (ESM) and Earth Observations (EO) as integral components of the SEPS coupled by the SEPS framework. EO measures the Earth system state while ESM predicts the evolution of the state. A feedback mechanism processes EO measurements and feeds them into ESM during model runs or as initial conditions. A feed-forward mechanism analyzes the ESM predictions against science goals for scheduling optimized/targeted observations. The SEPS framework automates the Feedback and Feed-forward mechanisms (the FF-loop). Based on open consensus-based standards, a general SEPS framework can be developed for supporting the dynamic, interoperable coupling between ESMs and EO. Such a framework can support the plug-in-and-play capability of both ESMs and diverse sensors and data systems as long as they support the standard interfaces. This presentation discusses the SEPS concept, the service-oriented architecture (SOA) of SEPS framework, standards of choices for the framework, and the implementation. The presentation also presents examples of SEPS to demonstrate dynamic, interoperable, and live coupling of

  19. Microbial food web dynamics along a soil chronosequence of a glacier forefield

    NASA Astrophysics Data System (ADS)

    Esperschütz, J.; Pérez-de-Mora, A.; Schreiner, K.; Welzl, G.; Buegger, F.; Zeyer, J.; Hagedorn, F.; Munch, J. C.; Schloter, M.

    2011-02-01

    Microbial food webs are critical for efficient nutrient turnover providing the basis for functional and stable ecosystems. However, the successional development of such microbial food webs and their role in "young" ecosystems is unclear. Due to a continuous glacier retreat since the middle of the 19th century, glacier forefields have expanded offering an excellent opportunity to study food web development at differently developed soils. In the present study, litter degradation and the corresponding C fluxes into microbial communities were investigated along the forefield of the Damma glacier (Switzerland). 13C-enriched litter of the pioneering plant Leucanthemopsis alpina (L.) Heywood was incorporated into the soil at sites that have been free from ice for approximately 10, 60, 100 and more than 700 years. The structure and function of microbial communities were identified by 13C analysis of phospholipid fatty acids (PLFA) and phospholipid ether lipids (PLEL). Results showed increasing microbial diversity and biomass, and enhanced proliferation of bacterial groups as ecosystem development progressed. Initially, litter decomposition proceeded faster at the more developed sites, but at the end of the experiment loss of litter mass was similar at all sites, once the more easily-degradable litter fraction was processed. As a result incorporation of 13C into microbial biomass was more evident during the first weeks of litter decomposition. 13C enrichments of both PLEL and PUFA biomarkers following litter incorporation were observed at all sites, suggesting similar microbial foodwebs at all stages of soil development. Nonetheless, the contribution of bacteria and actinomycetes to litter turnover became more pronounced as soil age increased in detriment of archaea, fungi and protozoa, more prominent in recently deglaciated terrain.

  20. Dislocation dynamics and the viscoplastic buckling of dendritic web type silicon ribbon

    NASA Technical Reports Server (NTRS)

    Tsai, C. T.; Dillon, O. W., Jr.; De Angelis, R. J.

    1987-01-01

    The effect of dendrites (reinforced edges) on the residual stresses, dislocation densities and buckling behavior during growth of web type silicon ribbon is studied. A viscoplastic material response function (Haasen-Sumino model) is used to calculate the stresses and the disloction density at each point in the silicon ribbon. In addition, the role of dendrites on the viscoplastic buckling behavior of the ribbon is investigated. The critical thicknesses, the corresponding deflection shapes and lateral deflection speeds are calculated. These results are then compared with similar data obtained for flat plates.

  1. Discrete chaotic cryptography

    NASA Astrophysics Data System (ADS)

    Kotulski, Zbigniew; Szczepaski, Janusz

    In the paper we propose a new method of constructing cryptosystems utilising a nonpredictability property of discrete chaotic systems. We formulate the requirements for such systems to assure their safety. We also give examples of practical realisation of chaotic cryptosystems, using a generalisation of the method presented in [7]. The proposed algorithm of encryption and decryption is based on multiple iteration of a certain dynamical chaotic system. We assume that some part of the initial condition is a plain message. As the secret key we assume the system parameter(s) and additionally another part of the initial condition.

  2. YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps.

    PubMed

    Batesole, Keith; Wimalanathan, Kokulapalan; Liu, Lin; Zhang, Fan; Echt, Craig S; Liang, Chun

    2014-01-01

    Comparative genetic maps are used in examination of genome organization, detection of conserved gene order, and exploration of marker order variations. YouGenMap is an open-source web tool that offers dynamic comparative mapping capability of users' own genetic mapping between 2 or more map sets. Users' genetic map data and optional gene annotations are uploaded, either publically or privately, as long as they follow our template which is available in several standard file formats. Data is parsed and loaded into MySQL relational database to be displayed and compared against users' genetic maps or other public data available on YouGenMap. With the highly interactive GUIs, all public data on YouGenMap are maps available for visualization, comparison, search, filtration and download. YouGenMap web tool is available on the website (http://conifergdb.miamioh.edu/yougenmap) with the source-code repository at (http://sourceforge.net/projects/yougenmap/?source=directory). PMID:25009553

  3. Microbial food web dynamics during spring phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean)

    NASA Astrophysics Data System (ADS)

    Christaki, U.; Lefèvre, D.; Georges, C.; Colombet, J.; Catala, P.; Courties, C.; Sime-Ngando, T.; Blain, S.; Obernosterer, I.

    2014-12-01

    Microbial food web dynamics were determined during the onset of several spring phytoplankton blooms induced by natural iron fertilization off Kerguelen Island in the Southern Ocean (KEOPS2). The abundances of heterotrophic bacteria and heterotrophic nanoflagellates, bacterial heterotrophic production, bacterial respiration, and bacterial growth efficiency, were consistently higher in surface waters of the iron-fertilized sites than at the reference site in HNLC (high nutrient low chlorophyll) waters. The abundance of virus-like particles remained unchanged, but viral production increased by a factor of 6 in iron-fertilized waters. Bacterial heterotrophic production was significantly related to heterotrophic nanoflagellate abundance and viral production across all sites, with bacterial production explaining about 70 and 85%, respectively, of the variance of each in the mixed layer (ML). Estimated rates of grazing and viral lysis, however, indicated that heterotrophic nanoflagellates accounted for a substantially higher loss of bacterial production (50%) than viruses (11%). Combining these results with rates of primary production and export determined for the study area, a budget for the flow of carbon through the microbial food web and higher trophic levels during the early (KEOPS2) and the late phase (KEOPS1) of the Kerguelen bloom is provided.

  4. Microbial food web dynamics during spring phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean)

    NASA Astrophysics Data System (ADS)

    Christaki, U.; Lefèvre, D.; Georges, C.; Colombet, J.; Catala, P.; Courties, C.; Sime-Ngando, T.; Blain, S.; Obernosterer, I.

    2014-05-01

    Microbial food web dynamics were determined during the onset of several spring phytoplankton blooms induced by natural iron fertilization off Kerguelen Island in the Southern Ocean (KEOPS2). The abundances of heterotrophic bacteria and heterotrophic nanoflagellates, bacterial heterotrophic production, bacterial respiration, and bacterial growth efficiency, were consistently higher in surface waters of the iron-fertilized sites than at the reference site in HNLC (high nutrient low chlorophyll) waters. The abundance of viral like particles remained unchanged, but viral production increased by a factor of 6 in iron-fertilized waters. Bacterial heterotrophic production was significantly related to heterotrophic nanoflagellate abundance and viral production across all sites, with bacterial production explaining about 70 and 85%, respectively, of the variance of each in the mixed layer (ML). Estimated rates of grazing and viral lysis, however, indicated that heterotrophic nanoflagellates accounted for a substantially higher loss of bacterial production (50%) than viruses (11%). Combining these results with rates of primary production and export determined for the study area, a budget for the flow of carbon through the microbial food web and higher levels during the early (KEOPS2) and the late phase (KEOPS1) of the Kerguelen bloom is provided.

  5. Chaos in Periodic Discrete Systems

    NASA Astrophysics Data System (ADS)

    Shi, Yuming; Zhang, Lijuan; Yu, Panpan; Huang, Qiuling

    This paper focuses on chaos in periodic discrete systems, whose state space may vary with time. Some close relationships between some chaotic dynamical behaviors of a periodic discrete system and its autonomous induced system are given. Based on these relationships, several criteria of chaos are established and some sufficient conditions for no chaos are given for periodic discrete systems. Further, it is shown that a finite-dimensional linear periodic discrete system is not chaotic in the sense of Li-Yorke or Wiggins. In particular, an interesting problem of whether nonchaotic rules may generate a chaotic system is studied, with some examples provided, one of which surprisingly shows that a composition of globally asymptotically stable maps can be chaotic. In addition, some properties of sign pattern matrices of non-negative square matrices are given for convenience of the study.

  6. Using web-based training to enhance perceptual-cognitive skills in complex dynamic offside events.

    PubMed

    Put, Koen; Wagemans, Johan; Spitz, Jochim; Williams, A Mark; Helsen, Werner F

    2016-01-01

    In association football, the difficulty in making offside decisions depends on both perceptual and cognitive processes. Therefore, the objectives of the present study were to enhance the decision-making skills of assistant referees by further developing their ability to (1) time slice the incoming information flow into series of isolated time frames during an ongoing offside situation and (2) use this information to mentally read off the spatial positions of the key-role players. Training (n = 10) and control groups (n = 10) were exposed to a pre- and post-test, consisting of an offside decision-making and frame recognition test. In the latter, assistant referees were asked to indicate which of five photos best represented the spatial position of the defender and attacker at the moment of the pass. Only the training group received 12 web-based offside training sessions. First, the training group improved in mentally freezing, holding and scanning the mental picture of the offside situation in short-term memory from pre- to post-test, as evidenced by an increased recognition accuracy. Second, the improvement in recognition accuracy resulted in enhanced performance on the offside decision-making task. The benefits of web-based training are highlighted. PMID:25972094

  7. Web-based interactive educational software introducing semiconductor laser dynamics: Sound of Lasers (SOL)

    NASA Astrophysics Data System (ADS)

    Consoli, Antonio; Sanchez, Jorge R.; Horche, Paloma R.; Esquivias, Ignacio

    2014-07-01

    presented. The proposed tool is addressed to the students of optical communication courses, encouraging self consolidation of the subjects learned in lectures. The semiconductor laser model is based on the well known rate equations for the carrier density, photon density and optical phase. The direct modulation of the laser is considered with input parameters which can be selected by the user. Different options for the waveform, amplitude and frequency of the injected current are available, together with the bias point. Simulation results are plotted for carrier density and output power versus time. Instantaneous frequency variations of the laser output are numerically shifted to the audible frequency range and sent to the computer loudspeakers. This results in an intuitive description of the "chirp" phenomenon due to amplitude-phase coupling, typical of directly modulated semiconductor lasers. In this way, the student can actually listen to the time resolved spectral content of the laser output. By changing the laser parameters and/or the modulation parameters, consequent variation of the laser output can be appreciated in intuitive manner. The proposed educational tool has been previously implemented by the same authors with locally executable software. In the present manuscript, we extend our previous work to a web based platform, offering improved distribution and allowing its use to the wide audience of the web.

  8. medplot: A Web Application for Dynamic Summary and Analysis of Longitudinal Medical Data Based on R

    PubMed Central

    Ahlin, Črt; Stupica, Daša; Strle, Franc; Lusa, Lara

    2015-01-01

    In biomedical studies the patients are often evaluated numerous times and a large number of variables are recorded at each time-point. Data entry and manipulation of longitudinal data can be performed using spreadsheet programs, which usually include some data plotting and analysis capabilities and are straightforward to use, but are not designed for the analyses of complex longitudinal data. Specialized statistical software offers more flexibility and capabilities, but first time users with biomedical background often find its use difficult. We developed medplot, an interactive web application that simplifies the exploration and analysis of longitudinal data. The application can be used to summarize, visualize and analyze data by researchers that are not familiar with statistical programs and whose knowledge of statistics is limited. The summary tools produce publication-ready tables and graphs. The analysis tools include features that are seldom available in spreadsheet software, such as correction for multiple testing, repeated measurement analyses and flexible non-linear modeling of the association of the numerical variables with the outcome. medplot is freely available and open source, it has an intuitive graphical user interface (GUI), it is accessible via the Internet and can be used within a web browser, without the need for installing and maintaining programs locally on the user’s computer. This paper describes the application and gives detailed examples describing how to use the application on real data from a clinical study including patients with early Lyme borreliosis. PMID:25837352

  9. An indicator-based evaluation of Black Sea food web dynamics during 1960-2000

    NASA Astrophysics Data System (ADS)

    Akoglu, Ekin; Salihoglu, Baris; Libralato, Simone; Oguz, Temel; Solidoro, Cosimo

    2014-06-01

    Four Ecopath mass-balance models were implemented for evaluating the structure and function of the Black Sea ecosystem using several ecological indicators during four distinctive periods (1960s, 1980-1987, 1988-1994 and 1995-2000). The results exemplify how the Black Sea ecosystem structure started to change after the 1960s as a result of a series of trophic transformations, i.e., shifts in the energy flow pathways through the food web. These transformations were initiated by anthropogenic factors, such as eutrophication and overfishing, that led to the transfer of large quantities of energy to the trophic dead-end species, which had no natural predators in the ecosystem, i.e., jellyfish whose biomass increased from 0.03 g C m- 2 in 1960-1969 to 0.933 g C m- 2 in 1988-1994. Concurrently, an alternative short pathway for energy transfer was formed that converted significant amounts of system production back to detritus. This decreased the transfer efficiency of energy flow from the primary producers to the higher trophic levels from 9% in the 1960s to 3% between 1980 and 1987. We conclude that the anchovy stock collapse and successful establishment of the alien comb-jelly Mnemiopsis in 1989 were rooted in the trophic interactions in the food web, all of which were exacerbated because of the long-term establishment of a combination of anthropogenic stressors.

  10. Feasibility of a Dynamic Web Guidance Approach for Personalized Physical Activity Prescription Based on Daily Information From Wearable Technology

    PubMed Central

    Coolbaugh, Crystal L; Raymond Jr, Stephen C

    2015-01-01

    Background Computer tailored, Web-based interventions have emerged as an effective approach to promote physical activity. Existing programs, however, do not adjust activities according to the participant’s compliance or physiologic adaptations, which may increase risk of injury and program attrition in sedentary adults. To address this limitation, objective activity monitor (AM) and heart rate data could be used to guide personalization of physical activity, but improved Web-based frameworks are needed to test such interventions. Objective The objective of this study is to (1) develop a personalized physical activity prescription (PPAP) app that combines dynamic Web-based guidance with multi-sensor AM data to promote physical activity and (2) to assess the feasibility of using this system in the field. Methods The PPAP app was constructed using an open-source software platform and a custom, multi-sensor AM capable of accurately measuring heart rate and physical activity. A novel algorithm was written to use a participant’s compliance and physiologic response to aerobic training (ie, changes in daily resting heart rate) recorded by the AM to create daily, personalized physical activity prescriptions. In addition, the PPAP app was designed to (1) manage the transfer of files from the AM to data processing software and a relational database, (2) provide interactive visualization features such as calendars and training tables to encourage physical activity, and (3) enable remote administrative monitoring of data quality and participant compliance. A 12-week feasibility study was performed to assess the utility and limitations of the PPAP app used by sedentary adults in the field. Changes in physical activity level and resting heart rate were monitored throughout the intervention. Results The PPAP app successfully created daily, personalized physical activity prescriptions and an interactive Web environment to guide and promote physical activity by the participants

  11. Study on dynamic services composition of web services based on BPEL

    NASA Astrophysics Data System (ADS)

    Gao, Jinyue; Huang, Fei; Zhang, Gongxuan

    2013-12-01

    From the core concepts of SOA (Service-Oriented Architecture) ——"Service" starting the service composition is discussed in detail, from the service relationships network modeling, services dynamic composition approach based on Business Process Execution Language BPEL (Business Process Execution Language) is proposed in this paper, meanwhile two concepts of service agent and service quality are described, which achieve the service process dynamic execution.

  12. Efficient solution of Poisson's equation using discrete variable representation basis sets for Car-Parrinello ab initio molecular dynamics simulations with cluster boundary conditions.

    PubMed

    Lee, Hee-Seung; Tuckerman, Mark E

    2008-12-14

    An efficient computational approach to perform Car-Parrinello ab initio molecular dynamics (CPAIMD) simulations under cluster (free) boundary conditions is presented. The general approach builds upon a recent real-space CPAIMD formalism using discrete variable representation (DVR) basis sets [Y. Liu et al., Phys. Rev. B 12, 125110 (2003); H.-S. Lee and M. E. Tuckerman, J. Phys. Chem. A 110, 5549 (2006)]. In order to satisfy cluster boundary conditions, a DVR based on sinc functions is utilized to expand the Kohn-Sham orbitals and electron density. Poisson's equation is solved in order to calculate the Hartree potential via an integral representation of the 1/r singularity. Excellent convergence properties are achieved with respect to the number of grid points (or DVR functions) and the size of the simulation cell. A straightforward implementation of the present approach leads to near linear scaling [O(N(4/3))] of the computational cost with respect to the system size (N) for the solution of Poisson's equation. The accuracy and stability of CPAIMD simulations based on sinc DVR are tested for a model problem as well as for N(2) and a water dimer. PMID:19071908

  13. Primary combination of phase-field and discrete dislocation dynamics methods for investigating athermal plastic deformation in various realistic Ni-base single crystal superalloy microstructures

    NASA Astrophysics Data System (ADS)

    Gao, Siwen; Rajendran, Mohan Kumar; Fivel, Marc; Ma, Anxin; Shchyglo, Oleg; Hartmaier, Alexander; Steinbach, Ingo

    2015-10-01

    Three-dimensional discrete dislocation dynamics (DDD) simulations in combination with the phase-field method are performed to investigate the influence of different realistic Ni-base single crystal superalloy microstructures with the same volume fraction of {γ\\prime} precipitates on plastic deformation at room temperature. The phase-field method is used to generate realistic microstructures as the boundary conditions for DDD simulations in which a constant high uniaxial tensile load is applied along different crystallographic directions. In addition, the lattice mismatch between the γ and {γ\\prime} phases is taken into account as a source of internal stresses. Due to the high antiphase boundary energy and the rare formation of superdislocations, precipitate cutting is not observed in the present simulations. Therefore, the plastic deformation is mainly caused by dislocation motion in γ matrix channels. From a comparison of the macroscopic mechanical response and the dislocation evolution for different microstructures in each loading direction, we found that, for a given {γ\\prime} phase volume fraction, the optimal microstructure should possess narrow and homogeneous γ matrix channels.

  14. Efficient Scheduling of Scientific Workflows with Energy Reduction Using Novel Discrete Particle Swarm Optimization and Dynamic Voltage Scaling for Computational Grids.

    PubMed

    Christobel, M; Tamil Selvi, S; Benedict, Shajulin

    2015-01-01

    One of the most significant and the topmost parameters in the real world computing environment is energy. Minimizing energy imposes benefits like reduction in power consumption, decrease in cooling rates of the computing processors, provision of a green environment, and so forth. In fact, computation time and energy are directly proportional to each other and the minimization of computation time may yield a cost effective energy consumption. Proficient scheduling of Bag-of-Tasks in the grid environment ravages in minimum computation time. In this paper, a novel discrete particle swarm optimization (DPSO) algorithm based on the particle's best position (pbDPSO) and global best position (gbDPSO) is adopted to find the global optimal solution for higher dimensions. This novel DPSO yields better schedule with minimum computation time compared to Earliest Deadline First (EDF) and First Come First Serve (FCFS) algorithms which comparably reduces energy. Other scheduling parameters, such as job completion ratio and lateness, are also calculated and compared with EDF and FCFS. An energy improvement of up to 28% was obtained when Makespan Conservative Energy Reduction (MCER) and Dynamic Voltage Scaling (DVS) were used in the proposed DPSO algorithm. PMID:26075296

  15. Dynamic multiple scattering theory of the Huggins coefficient for discrete Gaussian chains. II. Numerical computations of the frequency dependence and steady state limit

    NASA Astrophysics Data System (ADS)

    Perico, Angelo; La Ferla, Roberto; Freed, Karl F.

    1987-05-01

    Numerical calculations are presented for the frequency dependent Huggins coefficient based on the formal derivation provided in paper I using the dynamical multiple scattering theory for discrete Gaussian chains. The calculations employ fast Fourier transform methods and confirm the analytic complexity of this frequency dependence as previously anticipated from our calculations of the concentration dependence of the normal mode autocorrelation function. The harmonic spring model is considered because this simple limit is amenable to closed form solution, displaying the frequency dependence of the relaxation rates and providing a useful check on the difficult numerical computations for higher numbers n of beads. The steady state Huggins coefficient is also calculated with carefully optimized Gauss-Laguerre quadrature methods which permit extrapolation to n→∞. The calculated steady state value of 0.33 lies below experimental data for theta solutions, and an extensive discussion of the experimental data is provided to understand the discrepancy. One major factor, suggested by Schrag, arises from a strong concentration dependence of the individual bead friction coefficient.

  16. Efficient Scheduling of Scientific Workflows with Energy Reduction Using Novel Discrete Particle Swarm Optimization and Dynamic Voltage Scaling for Computational Grids

    PubMed Central

    Christobel, M.; Tamil Selvi, S.; Benedict, Shajulin

    2015-01-01

    One of the most significant and the topmost parameters in the real world computing environment is energy. Minimizing energy imposes benefits like reduction in power consumption, decrease in cooling rates of the computing processors, provision of a green environment, and so forth. In fact, computation time and energy are directly proportional to each other and the minimization of computation time may yield a cost effective energy consumption. Proficient scheduling of Bag-of-Tasks in the grid environment ravages in minimum computation time. In this paper, a novel discrete particle swarm optimization (DPSO) algorithm based on the particle's best position (pbDPSO) and global best position (gbDPSO) is adopted to find the global optimal solution for higher dimensions. This novel DPSO yields better schedule with minimum computation time compared to Earliest Deadline First (EDF) and First Come First Serve (FCFS) algorithms which comparably reduces energy. Other scheduling parameters, such as job completion ratio and lateness, are also calculated and compared with EDF and FCFS. An energy improvement of up to 28% was obtained when Makespan Conservative Energy Reduction (MCER) and Dynamic Voltage Scaling (DVS) were used in the proposed DPSO algorithm. PMID:26075296

  17. Dynamic taxonomies applied to a web-based relational database for geo-hydrological risk mitigation

    NASA Astrophysics Data System (ADS)

    Sacco, G. M.; Nigrelli, G.; Bosio, A.; Chiarle, M.; Luino, F.

    2012-02-01

    In its 40 years of activity, the Research Institute for Geo-hydrological Protection of the Italian National Research Council has amassed a vast and varied collection of historical documentation on landslides, muddy-debris flows, and floods in northern Italy from 1600 to the present. Since 2008, the archive resources have been maintained through a relational database management system. The database is used for routine study and research purposes as well as for providing support during geo-hydrological emergencies, when data need to be quickly and accurately retrieved. Retrieval speed and accuracy are the main objectives of an implementation based on a dynamic taxonomies model. Dynamic taxonomies are a general knowledge management model for configuring complex, heterogeneous information bases that support exploratory searching. At each stage of the process, the user can explore or browse the database in a guided yet unconstrained way by selecting the alternatives suggested for further refining the search. Dynamic taxonomies have been successfully applied to such diverse and apparently unrelated domains as e-commerce and medical diagnosis. Here, we describe the application of dynamic taxonomies to our database and compare it to traditional relational database query methods. The dynamic taxonomy interface, essentially a point-and-click interface, is considerably faster and less error-prone than traditional form-based query interfaces that require the user to remember and type in the "right" search keywords. Finally, dynamic taxonomy users have confirmed that one of the principal benefits of this approach is the confidence of having considered all the relevant information. Dynamic taxonomies and relational databases work in synergy to provide fast and precise searching: one of the most important factors in timely response to emergencies.

  18. Food web dynamics in the Scotia Sea in summer: A stable isotope study

    NASA Astrophysics Data System (ADS)

    Stowasser, G.; Atkinson, A.; McGill, R. A. R.; Phillips, R. A.; Collins, M. A.; Pond, D. W.

    2012-01-01

    The pelagic food web of the Scotia Sea was studied by analysing natural abundances of nitrogen and carbon stable isotopes of primary producers and pelagic consumers, sampled from the seasonal ice edge in the south to the Antarctic Polar Front in the north. The analysis covered, within a single mid-summer period, particulate organic matter (POM) and 38 taxa, ranging from suspension feeding copepods and salps to omnivorous euphausiids, pelagic fish and higher, land-based predators including fur seals, penguins and flying birds. Spatial variation in δ 15N of POM correlated well with nutrient availability and primary productivity. Latitudinal differences in δ 13C of POM were closely linked to variations in temperature, nutrients and productivity depending on the frontal region sampled. This translated to equivalent (although smaller) regional δ 13C differences among higher trophic levels. The trophic positions of species based on isotope values broadly agreed with previously published dietary data with three important exceptions. First, the carnivorous amphipod Themisto gaudichaudii had anomalously low δ 15N values. Second, Euphausia superba had δ 15N values that were also surprisingly low, considering the abundant literature suggesting its omnivory. Third, the copepod Rhincalanus gigas, considered a suspension feeder, had unexpectedly high δ 15N values rather more in keeping with omnivorous feeding. The consumer δ 15N values ranged from 1.2‰ (min.) measured in Salpa thompsoni (designated here as trophic level (TL) 2 across all regions) to 15.2‰ (max.) measured in white-chinned petrels ( Procellaria aequinoctialis, calculated as TL5 relative to the TL2 of salps). Excluding seabirds, the resulting food chain length of 3.7 TL (above POM at TL1) was lower than in most other Southern Ocean and temperate marine pelagic ecosystems. The majority (60%) of vertebrate predators occupied only 1-1.5 trophic levels above the herbivorous suspension feeders such as krill

  19. Discrete Trials Teaching

    ERIC Educational Resources Information Center

    Ghezzi, Patrick M.

    2007-01-01

    The advantages of emphasizing discrete trials "teaching" over discrete trials "training" are presented first, followed by a discussion of discrete trials as a method of teaching that emerged historically--and as a matter of necessity for difficult learners such as those with autism--from discrete trials as a method for laboratory research. The…

  20. Coupling News Sentiment with Web Browsing Data Improves Prediction of Intra-Day Price Dynamics.

    PubMed

    Ranco, Gabriele; Bordino, Ilaria; Bormetti, Giacomo; Caldarelli, Guido; Lillo, Fabrizio; Treccani, Michele

    2016-01-01

    The new digital revolution of big data is deeply changing our capability of understanding society and forecasting the outcome of many social and economic systems. Unfortunately, information can be very heterogeneous in the importance, relevance, and surprise it conveys, affecting severely the predictive power of semantic and statistical methods. Here we show that the aggregation of web users' behavior can be elicited to overcome this problem in a hard to predict complex system, namely the financial market. Specifically, our in-sample analysis shows that the combined use of sentiment analysis of news and browsing activity of users of Yahoo! Finance greatly helps forecasting intra-day and daily price changes of a set of 100 highly capitalized US stocks traded in the period 2012-2013. Sentiment analysis or browsing activity when taken alone have very small or no predictive power. Conversely, when considering a news signal where in a given time interval we compute the average sentiment of the clicked news, weighted by the number of clicks, we show that for nearly 50% of the companies such signal Granger-causes hourly price returns. Our result indicates a "wisdom-of-the-crowd" effect that allows to exploit users' activity to identify and weigh properly the relevant and surprising news, enhancing considerably the forecasting power of the news sentiment. PMID:26808833

  1. Food-web dynamics and trophic-level interactions in a multispecies community of freshwater unionids

    USGS Publications Warehouse

    Nichols, S.J.; Garling, D.

    2000-01-01

    We compared feeding habits and trophic-level relationships of unionid species in a detritus-dominated river and an alga-dominated lake using biochemical analyses, gut contents, and stable-isotope ratios. The δ13C ratios for algae and other food-web components show that all unionids from both the river and the lake used bacterial carbons, not algal carbons, as their main dietary source, in spite of positive selection and concentration of diatoms and green algae from the water column in the gut and mantle cavity. Algae did provide key nutrients such as vitamins A and D and phytosterols that were bioaccumulated in the tissues of all species. The δ15N ratios for the multispecies unionid community in the Huron River indicated some differences in nitrogen enrichment between species, the greatest enrichment being found in Pyganadon grandis. These δ15N ratios indicate that unionids may not always feed as primary consumers or omnivores. Stable-isotope data were critical for delineating diets and trophic-level interactions of this group of filter-feeders. Further refinements in identifying bacterial and picoplankton components of the fine particulate organic matter are needed to complete our understanding of resource partitioning between multispecies unionid populations.

  2. Coupling News Sentiment with Web Browsing Data Improves Prediction of Intra-Day Price Dynamics

    PubMed Central

    Ranco, Gabriele; Bordino, Ilaria; Bormetti, Giacomo; Caldarelli, Guido; Lillo, Fabrizio; Treccani, Michele

    2016-01-01

    The new digital revolution of big data is deeply changing our capability of understanding society and forecasting the outcome of many social and economic systems. Unfortunately, information can be very heterogeneous in the importance, relevance, and surprise it conveys, affecting severely the predictive power of semantic and statistical methods. Here we show that the aggregation of web users’ behavior can be elicited to overcome this problem in a hard to predict complex system, namely the financial market. Specifically, our in-sample analysis shows that the combined use of sentiment analysis of news and browsing activity of users of Yahoo! Finance greatly helps forecasting intra-day and daily price changes of a set of 100 highly capitalized US stocks traded in the period 2012–2013. Sentiment analysis or browsing activity when taken alone have very small or no predictive power. Conversely, when considering a news signal where in a given time interval we compute the average sentiment of the clicked news, weighted by the number of clicks, we show that for nearly 50% of the companies such signal Granger-causes hourly price returns. Our result indicates a “wisdom-of-the-crowd” effect that allows to exploit users’ activity to identify and weigh properly the relevant and surprising news, enhancing considerably the forecasting power of the news sentiment. PMID:26808833

  3. On finding and using identifiable parameter combinations in nonlinear dynamic systems biology models and COMBOS: a novel web implementation.

    PubMed

    Meshkat, Nicolette; Kuo, Christine Er-zhen; DiStefano, Joseph

    2014-01-01

    Parameter identifiability problems can plague biomodelers when they reach the quantification stage of development, even for relatively simple models. Structural identifiability (SI) is the primary question, usually understood as knowing which of P unknown biomodel parameters p1,…, pi,…, pP are-and which are not-quantifiable in principle from particular input-output (I-O) biodata. It is not widely appreciated that the same database also can provide quantitative information about the structurally unidentifiable (not quantifiable) subset, in the form of explicit algebraic relationships among unidentifiable pi. Importantly, this is a first step toward finding what else is needed to quantify particular unidentifiable parameters of interest from new I-O experiments. We further develop, implement and exemplify novel algorithms that address and solve the SI problem for a practical class of ordinary differential equation (ODE) systems biology models, as a user-friendly and universally-accessible web application (app)-COMBOS. Users provide the structural ODE and output measurement models in one of two standard forms to a remote server via their web browser. COMBOS provides a list of uniquely and non-uniquely SI model parameters, and-importantly-the combinations of parameters not individually SI. If non-uniquely SI, it also provides the maximum number of different solutions, with important practical implications. The behind-the-scenes symbolic differential algebra algorithms are based on computing Gröbner bases of model attributes established after some algebraic transformations, using the computer-algebra system Maxima. COMBOS was developed for facile instructional and research use as well as modeling. We use it in the classroom to illustrate SI analysis; and have simplified complex models of tumor suppressor p53 and hormone regulation, based on explicit computation of parameter combinations. It's illustrated and validated here for models of moderate complexity, with

  4. Dynamic Angular Petrissage as Treatment for Axillary Web Syndrome Occurring after Surgery for Breast Cancer: a Case Report

    PubMed Central

    Lewis, Paul A.; Cunningham, Joan E.

    2016-01-01

    Background In the context of breast cancer, axillary web syndrome (AWS), also called lymphatic cording, typically presents in the weeks after axillary surgery. This painful condition, likely lymphofibrotic in origin, restricts upper extremity range of motion (ROM). There is no established treatment, although physical therapy and other approaches have been used to variable effect. This report describes treatment of a female client with AWS, who had recently undergone a unilateral simple mastectomy with sentinel node biopsy plus axillary dissection. Methods The client presented with pain upon movement (self-reported as 5 on the 0–10 Oxford Pain Scale), visible cording and restricted use of the ipsilateral upper extremity. Clinical assessment included determining the extent of AWS cording (taut, from axilla to wrist) and measuring glenohumeral joint ROM (140° flexion by goniometer). A therapeutic massage with movement protocol, termed dynamic angular petrissage, was administered over two sessions: Swedish massage combined with dynamically taking the limb through all possible angles of movement (passive ROM), controlling stretch and tension while simultaneously and segmentally applying petrissage and non-petrissage techniques to the underlying soft tissue. Careful attention was taken to not break the cord. Home care consisted of prescribed exercises performed by the patient. Results After Session One, pain was reduced (to 0/10), ROM improved (to 170° flexion), and cording was visibly reduced. After Session Two the cord was residually apparent only on hyperextension, with no ROM restrictions in glenohumeral joint flexion. Follow-up at three months revealed absence of visual or palpable evidence of cording, unrestricted glenohumeral joint ROM, and absence of movement-associated pain. Conclusion The signs and symptoms of AWS were quickly and effectively eliminated, without causing any pain or discomfort to the client. We propose that dynamic angular petrissage may be

  5. SH Wave Number Green's Function for a Layered, Elastic Half-Space. Part I: Theory and Dynamic Canyon Response by the Discrete Wave Number Boundary Element Method

    NASA Astrophysics Data System (ADS)

    Restrepo, Doriam; Gómez, Juan David; Jaramillo, Juan Diego

    2014-09-01

    We present a closed-form frequency-wave number ( ω - k) Green's function for a layered, elastic half-space under SH wave propagation. It is shown that for every ( ω - k) pair, the fundamental solution exhibits two distinctive features: (1) the original layered system can be reduced to a system composed by the uppermost superficial layer over an equivalent half-space; (2) the fundamental solution can be partitioned into three different fundamental solutions, each one carrying out a different physical interpretation, i.e., an equivalent half-space, source image impact, and dispersive wave effect, respectively. Such an interpretation allows the proper use of analytical and numerical integration schemes, and ensures the correct assessment of Cauchy principal value integrals. Our method is based upon a stiffness-matrix scheme, and as a first approach we assume that observation points and the impulsive SH line-source are spatially located within the uppermost superficial layer. We use a discrete wave number boundary element strategy to test the benefits of our fundamental solution. We benchmark our results against reported solutions for an infinitely long circular canyon subjected to oblique incident SH waves within a homogeneous half-space. Our results show an almost exact agreement with previous studies. We further shed light on the impact of horizontal strata by examining the dynamic response of the circular canyon to oblique incident SH waves under different layered half-space configurations and incident angles. Our results show that modifications in the layering structure manifest by larger peak ground responses, and stronger spatial variability due to interactions of the canyon geometry with trapped Love waves in combination with impedance contrast effects.

  6. 3D discrete angiogenesis dynamic model and stochastic simulation for the assessment of blood perfusion coefficient and impact on heat transfer between nanoparticles and malignant tumors.

    PubMed

    Yifat, Jonathan; Gannot, Israel

    2015-03-01

    Early detection of malignant tumors plays a crucial role in the survivability chances of the patient. Therefore, new and innovative tumor detection methods are constantly searched for. Tumor-specific magnetic-core nano-particles can be used with an alternating magnetic field to detect and treat tumors by hyperthermia. For the analysis of the method effectiveness, the bio-heat transfer between the nanoparticles and the tissue must be carefully studied. Heat diffusion in biological tissue is usually analyzed using the Pennes Bio-Heat Equation, where blood perfusion plays an important role. Malignant tumors are known to initiate an angiogenesis process, where endothelial cell migration from neighboring vasculature eventually leads to the formation of a thick blood capillary network around them. This process allows the tumor to receive its extensive nutrition demands and evolve into a more progressive and potentially fatal tumor. In order to assess the effect of angiogenesis on the bio-heat transfer problem, we have developed a discrete stochastic 3D model & simulation of tumor-induced angiogenesis. The model elaborates other angiogenesis models by providing high resolution 3D stochastic simulation, capturing of fine angiogenesis morphological features, effects of dynamic sprout thickness functions, and stochastic parent vessel generator. We show that the angiogenesis realizations produced are well suited for numerical bio-heat transfer analysis. Statistical study on the angiogenesis characteristics was derived using Monte Carlo simulations. According to the statistical analysis, we provide analytical expression for the blood perfusion coefficient in the Pennes equation, as a function of several parameters. This updated form of the Pennes equation could be used for numerical and analytical analyses of the proposed detection and treatment method. PMID:24462603

  7. The discrete-time compensated Kalman filter

    NASA Technical Reports Server (NTRS)

    Lee, W. H.; Athans, M.

    1978-01-01

    A suboptimal dynamic compensator to be used in conjunction with the ordinary discrete time Kalman filter was derived. The resultant compensated Kalman Filter has the property that steady state bias estimation errors, resulting from modelling errors, were eliminated.

  8. Comparing the Discrete and Continuous Logistic Models

    ERIC Educational Resources Information Center

    Gordon, Sheldon P.

    2008-01-01

    The solutions of the discrete logistic growth model based on a difference equation and the continuous logistic growth model based on a differential equation are compared and contrasted. The investigation is conducted using a dynamic interactive spreadsheet. (Contains 5 figures.)

  9. Microbial food web dynamics in response to a Saharan dust event: results from a mesocosm study in the oligotrophic Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Pulido-Villena, E.; Baudoux, A.-C.; Obernosterer, I.; Landa, M.; Caparros, J.; Catala, P.; Georges, C.; Harmand, J.; Guieu, C.

    2014-10-01

    The significant impact of dust deposition on heterotrophic bacterial dynamics in the surface oligotrophic ocean has recently been evidenced. Considering the central role of bacteria in the microbial loop, it is likely that dust deposition also affects the structure and the functioning of the whole microbial food web. In the frame of the DUNE project, aiming to estimate the impact of dust deposition on the oligotrophic Mediterranean Sea through mesocosm experiments, the main goal of the present paper was to assess how two successive dust deposition events affect the dynamics of the microbial food web. The first dust seeding delivered new P and N to the amended mesocosms and resulted in a pronounced stimulation of bacterial respiration. It also induced pronounced, but transient, changes in the bacterial community composition. No significant effects were observed on the abundances of viruses and heterotrophic nanoflagellates. The second dust seeding also delivered new P and N to the amended mesocosms, but the effect on the microbial food web was very different. Bacterial respiration remained constant and bacterial abundance decreased. Compositional changes following the second seeding were minor compared to the first one. The decrease in bacterial abundance coincided with an increase in virus abundance, resulting in higher virus:bacteria ratios throughout the second seeding period. Our study shows that dust deposition to the surface oligotrophic ocean may involve important modifications of the trophic links among the components of the microbial food web with presumed consequences on C and nutrient cycling.

  10. Microbial food web dynamics in response to a Saharan dust event: results from a mesocosm study in the oligotrophic Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Pulido-Villena, E.; Baudoux, A.-C.; Obernosterer, I.; Landa, M.; Caparros, J.; Catala, P.; Georges, C.; Harmand, J.; Guieu, C.

    2014-01-01

    The significant impact of dust deposition on heterotrophic bacterial dynamics in the surface oligotrophic ocean has recently been evidenced. Considering the central role of bacteria in the microbial loop, it is likely that dust deposition also affects the structure and the functioning of the whole microbial food web. In the frame of the DUNE project, aiming to estimate the impact of dust deposition on the oligotrophic Mediterranean Sea through mesocosm experiments, the main goal of the present paper was to assess how two successive dust deposition events affect the dynamics of the microbial food web. The first dust seeding delivered new P and N to the amended mesocosms and resulted in a pronounced stimulation of bacterial respiration. It also induced pronounced, but transient, changes in the bacterial community composition. No significant effects were observed on the abundances of viruses and heterotrophic nanoflagellates. The second dust seeding also delivered new P and N to the amended mesocosms but the effect on the microbial food web was very different. Bacterial respiration remained constant and bacterial abundance decreased. Compositional changes following the second seeding were minor compared to the first one. The decrease in bacterial abundance coincided with an increase in virus abundance, resulting in higher virus: bacteria ratios throughout the second seeding period. Our study shows that dust deposition to the surface oligotrophic ocean may involve important modifications of the trophic links among the components of the microbial food web with presumed consequences on C and nutrient cycling.

  11. SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser.

    PubMed

    Walsh, Thomas P; Webber, Caleb; Searle, Stephen; Sturrock, Shane S; Barton, Geoffrey J

    2008-07-01

    SCANPS performs iterative profile searching similar to PSI-BLAST but with full dynamic programing on each cycle and on-the-fly estimation of significance. This combination gives good sensitivity and selectivity that outperforms PSI-BLAST in domain-searching benchmarks. Although computationally expensive, SCANPS exploits onchip parallelism (MMX and SSE2 instructions on Intel chips) as well as MPI parallelism to give acceptable turnround times even for large databases. A web server developed to run SCANPS searches is now available at http://www.compbio.dundee.ac.uk/www-scanps. The server interface allows a range of different protein sequence databases to be searched including the SCOP database of protein domains. The server provides the user with regularly updated versions of the main protein sequence databases and is backed up by significant computing resources which ensure that searches are performed rapidly. For SCOP searches, the results may be viewed in a new tree-based representation that reflects the structure of the SCOP hierarchy; this aids the user in placing each hit in the context of its SCOP classification and understanding its relationship to other domains in SCOP. PMID:18503088

  12. Temporal dynamics in a shallow coastal benthic food web: Insights from fatty acid biomarkers and their stable isotopes.

    PubMed

    Braeckman, Ulrike; Provoost, Pieter; Sabbe, Koen; Soetaert, Karline; Middelburg, Jack J; Vincx, Magda; Vanaverbeke, Jan

    2015-07-01

    We investigated the temporal variation of pelagic and benthic food sources in the diet of benthic taxa at a depositional site in the Southern Bight of the North Sea by means of fatty acid (FA) biomarkers and compound-specific stable isotope analysis (CSIA). The taxa were the non-selective deposit feeding nematodes (Sabatieria spp. and 'other nematodes'), and three dominant macrobenthic species: two true suspension-deposit feeders (the bivalve Abra alba and the tube dwelling polychaete Owenia fusiformis) and the suspected predatory mud-dwelling anemone Sagartia sp. These species make up on average 16% (Abra alba), 17% (Sagartia sp.) and 20% (Owenia fusiformis) of the biomass in the Abra alba-Kurtiella bidentata community in this area. Phytoplankton dynamics in the suspended particulate matter of the water column as inferred from cell counts, chlorophyll-a and organic carbon content were clearly visible in sediment and animal FA abundance as well, whereas phytodetritus dynamics in the sediment FA composition were less clear, probably due to patchy distribution or stripping of FA by macrofauna. Nematodes appeared to assimilate mainly Polyunsaturated Fatty Acids (PUFAs) from their sedimentary environment and were further non-selectively accumulating more (Sabatieria spp.) or less ('other nematodes') FA from the deposited phytodetritus. In contrast, Abra alba FA composition was consistent with a diatom-dominated diet and consumption of Phaeocystis was observed in Owenia fusiformis, whereas Sagartia sp. showed evidence of a predatory behaviour. While the total FA content in Owenia fusiformis remained constant throughout the year, Sagartia sp. doubled and Abra alba increased its FA level more than 10-fold in response to the organic matter deposition from the phytoplankton bloom. This leads to the conclusion that there is no resource partitioning between non-selective deposit feeding nematodes and the suspension-deposit feeding macrobenthic organisms, suggesting they

  13. Web Team Development

    ERIC Educational Resources Information Center

    Church, Jennifer; Felker, Kyle

    2005-01-01

    The dynamic world of the Web has provided libraries with a wealth of opportunities, including new approaches to the provision of information and varied internal staffing structures. The development of self-managed Web teams, endowed with authority and resources, can create an adaptable and responsive culture within libraries. This new working team…

  14. On Finding and Using Identifiable Parameter Combinations in Nonlinear Dynamic Systems Biology Models and COMBOS: A Novel Web Implementation

    PubMed Central

    DiStefano, Joseph

    2014-01-01

    Parameter identifiability problems can plague biomodelers when they reach the quantification stage of development, even for relatively simple models. Structural identifiability (SI) is the primary question, usually understood as knowing which of P unknown biomodel parameters p1,…, pi,…, pP are-and which are not-quantifiable in principle from particular input-output (I-O) biodata. It is not widely appreciated that the same database also can provide quantitative information about the structurally unidentifiable (not quantifiable) subset, in the form of explicit algebraic relationships among unidentifiable pi. Importantly, this is a first step toward finding what else is needed to quantify particular unidentifiable parameters of interest from new I–O experiments. We further develop, implement and exemplify novel algorithms that address and solve the SI problem for a practical class of ordinary differential equation (ODE) systems biology models, as a user-friendly and universally-accessible web application (app)–COMBOS. Users provide the structural ODE and output measurement models in one of two standard forms to a remote server via their web browser. COMBOS provides a list of uniquely and non-uniquely SI model parameters, and–importantly-the combinations of parameters not individually SI. If non-uniquely SI, it also provides the maximum number of different solutions, with important practical implications. The behind-the-scenes symbolic differential algebra algorithms are based on computing Gröbner bases of model attributes established after some algebraic transformations, using the computer-algebra system Maxima. COMBOS was developed for facile instructional and research use as well as modeling. We use it in the classroom to illustrate SI analysis; and have simplified complex models of tumor suppressor p53 and hormone regulation, based on explicit computation of parameter combinations. It’s illustrated and validated here for models of moderate complexity

  15. A web based Radiation Oncology Dose Manager with a rich User Interface developed using AJAX, ruby, dynamic XHTML and the new Yahoo/EXT User Interface Library.

    PubMed

    Vali, Faisal; Hong, Robert

    2007-01-01

    With the evolution of AJAX, ruby on rails, advanced dynamic XHTML technologies and the advent of powerful user interface libraries for javascript (EXT, Yahoo User Interface Library), developers now have the ability to provide truly rich interfaces within web browsers, with reasonable effort and without third-party plugins. We designed and developed an example of such a solution. The User Interface allows radiation oncology practices to intuitively manage different dose fractionation schemes by helping estimate total dose to irradiated organs. PMID:18694240

  16. Degassing and magma mixing during the eruption of Surtsey Volcano (Iceland, 1963-1967): the signatures of a dynamic and discrete rift propagation event

    NASA Astrophysics Data System (ADS)

    Schipper, C. Ian; Le Voyer, Marion; Moussallam, Yves; White, James D. L.; Thordarson, Thor; Kimura, Jun-Ichi; Chang, Qing

    2016-04-01

    /1965 gases extremely well, but cannot account for the oxidized gases emitted in 1967, which may have been contaminated by ambient air in a system that was opening as the eruption waned. Surtsey's pyroclastic resurgence can be explained by recharge from ephemeral and compositionally heterogeneous magma bodies, tapped from possibly as deep as the mantle-crust boundary, in a process consistent with the progressively increasing interconnection between magma bodies that is typical at propagating rift tips. The eruption of Surtsey therefore shows that magma system evolution at rift tips can occur in dynamic and discrete events, with influx of new magma having explosive consequences.

  17. Community food webs

    USGS Publications Warehouse

    DeAngelis, Donald L.

    2002-01-01

    Community food webs describe the feeding relationships, or trophic interactions, between the species of an ecological community. Both the structure and dynamics of such webs are the focus of food web research. The topological structures of empirical food webs from many ecosystems have been published on the basis of field studies and they form the foundation for theory concerning the mean number of trophic levels, the mean number of trophic connections versus number of species, and other food web measures, which show consistency across different ecosystems. The dynamics of food webs are influenced by indirect interactions, in which changes in the level of a population in one part of the food web may have indirect effects throughout the web. The mechanisms of these interactions are typically studied microcosm experiments, or sometimes in-field experiments. The use of mathematical models is also a major approach to understanding the effects of indirect interactions. Both empirical and mathematical studies have revealed important properties of food webs, such as keystone predators and trophic cascades.

  18. Discrete vortex representation of magnetohydrodynamics

    SciTech Connect

    Kinney, R.; Tajima, T.; Petviashvili, N.; McWilliams, J.C.

    1993-02-01

    We present an alternative approach to statistical analysis of an intermittent ideal MHD fluid in two dimensions, based on the hydrodynamical discrete vortex model applied to the Elsasser variables. The model contains negative temperature states which predict the formation of magnetic islands, but also includes a natural limit under which the equilibrium states revert to the familiar twin-vortex states predicted by hydrodynamical turbulence theories. Numerical dynamical calculations yield equilibrium spectra in agreement with the theoretical predictions.

  19. Kinetic evidence for the formation of discrete 1,4-dehydrobenzene intermediates. Trapping by inter- and intramolecular hydrogen atom transfer and observation of high-temperature CIDNP (chemically induced dynamic nuclear polarization). [Chemically induced dynamic nuclear polarization

    SciTech Connect

    Lockhart, T.P.; Comita, P.B.; Bergman, R.G.

    1981-07-15

    Upon being heated, alkyl-substituted cis-1,2-diethynyl olefins undergo cyclization to yield reactive 1,4-dehydrobenzenes; the products isolated may be derived from either unimolecular or bimolecular reactions of the intermediate. (Z)-4,5-Diethynyl-4-octene (4) undergoes rearrangement to yield 2,3-di-n-propyl-1,4-dehydrobenzene (17). Solution pyrolysis of 4 in inert aromatic solvents produces three unimolecular products, (Z)-dodeca-4,8-diyn-6-ene (7), benzocycloctene (9), and o-allyl-n-propylbenzene (10), in high yield. When 1,4-cyclohexadiene is added to the pyrolysis solution as a trapping agent high yields of the reduced product o-di-n-propylbenzene (12) are obtained. The kinetics of solution pyrolysis of 4 in the presence and absence of trapping agent pyl-1,4-dehydrobenzene is a discrete intermediate on the pathway leading to products. When the reaction was run in the heated probe of an NMR spectrometer, chemically induced dynamic nuclear polarization was observed in 10. This observation, along with kinetic and chemical trapping evidence, indicates the presence of two additional intermediates, formed from 17 by sequential intramolecular (1,5) hydrogen transfer, on the pathway to products. The observation of CIDNP, coupled with the reactivity exhibited by 17 and the other two intermediates, implicates a biradical description of these molecules.

  20. Discrete breathers in graphane: Effect of temperature

    NASA Astrophysics Data System (ADS)

    Baimova, J. A.; Murzaev, R. T.; Lobzenko, I. P.; Dmitriev, S. V.; Zhou, Kun

    2016-05-01

    The discrete breathers in graphane in thermodynamic equilibrium in the temperature range 50-600 K are studied by molecular dynamics simulation. A discrete breather is a hydrogen atom vibrating along the normal to a sheet of graphane at a high amplitude. As was found earlier, the lifetime of a discrete breather at zero temperature corresponds to several tens of thousands of vibrations. The effect of temperature on the decay time of discrete breathers and the probability of their detachment from a sheet of graphane are studied in this work. It is shown that closely spaced breathers can exchange energy with each other at zero temperature. The data obtained suggest that thermally activated discrete breathers can be involved in the dehydrogenation of graphane, which is important for hydrogen energetics.

  1. Driven discrete time quantum walks

    NASA Astrophysics Data System (ADS)

    Hamilton, Craig S.; Barkhofen, Sonja; Sansoni, Linda; Jex, Igor; Silberhorn, Christine

    2016-07-01

    We introduce the driven discrete time quantum walk (QW), where walkers are added during the walk instead of only at the beginning. This leads to interference in walker number and very different dynamics when compared to the original QW. These dynamics have two regimes, which we illustrate using the one-dimensional line. Then, we explore a search application which has certain advantages over current search protocols, namely that it does not require a complicated initial state nor a specific measurement time to observe the marked state. Finally, we describe a potential experimental implementation using existing technology.

  2. Designing an architectural style for dynamic medical Cross-Organizational Workflow management system: an approach based on agents and web services.

    PubMed

    Bouzguenda, Lotfi; Turki, Manel

    2014-04-01

    This paper shows how the combined use of agent and web services technologies can help to design an architectural style for dynamic medical Cross-Organizational Workflow (COW) management system. Medical COW aims at supporting the collaboration between several autonomous and possibly heterogeneous medical processes, distributed over different organizations (Hospitals, Clinic or laboratories). Dynamic medical COW refers to occasional cooperation between these health organizations, free of structural constraints, where the medical partners involved and their number are not pre-defined. More precisely, this paper proposes a new architecture style based on agents and web services technologies to deal with two key coordination issues of dynamic COW: medical partners finding and negotiation between them. It also proposes how the proposed architecture for dynamic medical COW management system can connect to a multi-agent system coupling the Clinical Decision Support System (CDSS) with Computerized Prescriber Order Entry (CPOE). The idea is to assist the health professionals such as doctors, nurses and pharmacists with decision making tasks, as determining diagnosis or patient data analysis without stopping their clinical processes in order to act in a coherent way and to give care to the patient. PMID:24682670

  3. The ultimatum game: Discrete vs. continuous offers

    NASA Astrophysics Data System (ADS)

    Dishon-Berkovits, Miriam; Berkovits, Richard

    2014-09-01

    In many experimental setups in social-sciences, psychology and economy the subjects are requested to accept or dispense monetary compensation which is usually given in discrete units. Using computer and mathematical modeling we show that in the framework of studying the dynamics of acceptance of proposals in the ultimatum game, the long time dynamics of acceptance of offers in the game are completely different for discrete vs. continuous offers. For discrete values the dynamics follow an exponential behavior. However, for continuous offers the dynamics are described by a power-law. This is shown using an agent based computer simulation as well as by utilizing an analytical solution of a mean-field equation describing the model. These findings have implications to the design and interpretation of socio-economical experiments beyond the ultimatum game.

  4. A web-deployed interface for performing ab initio molecular dynamics, optimization, and electronic structure in FIREBALL

    NASA Astrophysics Data System (ADS)

    Keith, J. Brandon; Fennick, Jacob R.; Junkermeier, Chad E.; Nelson, Daniel R.; Lewis, James P.

    2009-03-01

    FIREBALL is an ab initio technique for fast local orbital simulations of nanotechnological, solid state, and biological systems. We have implemented a convenient interface for new users and software architects in the platform-independent Java language to access FIREBALL's unique and powerful capabilities. The graphical user interface can be run directly from a web server or from within a larger framework such as the Computational Science and Engineering Online (CSE-Online) environment or the Distributed Analysis of Neutron Scattering Experiments (DANSE) framework. We demonstrate its use for high-throughput electronic structure calculations and a multi-100 atom quantum molecular dynamics (MD) simulation. Program summaryProgram title: FireballUI Catalogue identifier: AECF_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AECF_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 279 784 No. of bytes in distributed program, including test data, etc.: 12 836 145 Distribution format: tar.gz Programming language: Java Computer: PC and workstation Operating system: The GUI will run under Windows, Mac and Linux. Executables for Mac and Linux are included in the package. RAM: 512 MB Word size: 32 or 64 bits Classification: 4.14 Nature of problem: The set up and running of many simulations (all of the same type), from the command line, is a slow process. But most research quality codes, including the ab initio tight-binding code FIREBALL, are designed to run from the command line. The desire is to have a method for quickly and efficiently setting up and running a host of simulations. Solution method: We have created a graphical user interface for use with the FIREBALL code. Once the user has created the files containing the atomic coordinates for each system that they are

  5. Web Mining

    NASA Astrophysics Data System (ADS)

    Fürnkranz, Johannes

    The World-Wide Web provides every internet citizen with access to an abundance of information, but it becomes increasingly difficult to identify the relevant pieces of information. Research in web mining tries to address this problem by applying techniques from data mining and machine learning to Web data and documents. This chapter provides a brief overview of web mining techniques and research areas, most notably hypertext classification, wrapper induction, recommender systems and web usage mining.

  6. Dark energy from discrete spacetime.

    PubMed

    Trout, Aaron D

    2013-01-01

    Dark energy accounts for most of the matter-energy content of our universe, yet current theories of its origin rely on radical physical assumptions such as the holographic principle or controversial anthropic arguments. We give a better motivated explanation for dark energy, claiming that it arises from a small negative scalar-curvature present even in empty spacetime. The vacuum has this curvature because spacetime is fundamentally discrete and there are more ways for a discrete geometry to have negative curvature than positive. We explicitly compute this effect using a variant of the well known dynamical-triangulations (DT) model for quantum gravity. Our model predicts a time-varying non-zero cosmological constant with a current value, [Formula: see text] in natural units, in agreement with observation. This calculation is made possible by a novel characterization of the possible DT action values combined with numerical evidence concerning their degeneracies. PMID:24312502

  7. Dark Energy from Discrete Spacetime

    PubMed Central

    Trout, Aaron D.

    2013-01-01

    Dark energy accounts for most of the matter-energy content of our universe, yet current theories of its origin rely on radical physical assumptions such as the holographic principle or controversial anthropic arguments. We give a better motivated explanation for dark energy, claiming that it arises from a small negative scalar-curvature present even in empty spacetime. The vacuum has this curvature because spacetime is fundamentally discrete and there are more ways for a discrete geometry to have negative curvature than positive. We explicitly compute this effect using a variant of the well known dynamical-triangulations (DT) model for quantum gravity. Our model predicts a time-varying non-zero cosmological constant with a current value, in natural units, in agreement with observation. This calculation is made possible by a novel characterization of the possible DT action values combined with numerical evidence concerning their degeneracies. PMID:24312502

  8. Discrete Element Modeling

    SciTech Connect

    Morris, J; Johnson, S

    2007-12-03

    The Distinct Element Method (also frequently referred to as the Discrete Element Method) (DEM) is a Lagrangian numerical technique where the computational domain consists of discrete solid elements which interact via compliant contacts. This can be contrasted with Finite Element Methods where the computational domain is assumed to represent a continuum (although many modern implementations of the FEM can accommodate some Distinct Element capabilities). Often the terms Discrete Element Method and Distinct Element Method are used interchangeably in the literature, although Cundall and Hart (1992) suggested that Discrete Element Methods should be a more inclusive term covering Distinct Element Methods, Displacement Discontinuity Analysis and Modal Methods. In this work, DEM specifically refers to the Distinct Element Method, where the discrete elements interact via compliant contacts, in contrast with Displacement Discontinuity Analysis where the contacts are rigid and all compliance is taken up by the adjacent intact material.

  9. Discrete breathers for a discrete nonlinear Schrödinger ring coupled to a central site.

    PubMed

    Jason, Peter; Johansson, Magnus

    2016-01-01

    We examine the existence and properties of certain discrete breathers for a discrete nonlinear Schrödinger model where all but one site are placed in a ring and coupled to the additional central site. The discrete breathers we focus on are stationary solutions mainly localized on one or a few of the ring sites and possibly also the central site. By numerical methods, we trace out and study the continuous families the discrete breathers belong to. Our main result is the discovery of a split bifurcation at a critical value of the coupling between neighboring ring sites. Below this critical value, families form closed loops in a certain parameter space, implying that discrete breathers with and without central-site occupation belong to the same family. Above the split bifurcation the families split up into several separate ones, which bifurcate with solutions with constant ring amplitudes. For symmetry reasons, the families have different properties below the split bifurcation for even and odd numbers of sites. It is also determined under which conditions the discrete breathers are linearly stable. The dynamics of some simpler initial conditions that approximate the discrete breathers are also studied and the parameter regimes where the dynamics remain localized close to the initially excited ring site are related to the linear stability of the exact discrete breathers. PMID:26871085

  10. Dynamic Interactive Educational Diabetes Simulations Using the World Wide Web: An Experience of More Than 15 Years with AIDA Online

    PubMed Central

    Lehmann, Eldon D.; DeWolf, Dennis K.; Novotny, Christopher A.; Reed, Karen; Gotwals, Robert R.

    2014-01-01

    Background. AIDA is a widely available downloadable educational simulator of glucose-insulin interaction in diabetes. Methods. A web-based version of AIDA was developed that utilises a server-based architecture with HTML FORM commands to submit numerical data from a web-browser client to a remote web server. AIDA online, located on a remote server, passes the received data through Perl scripts which interactively produce 24 hr insulin and glucose simulations. Results. AIDA online allows users to modify the insulin regimen and diet of 40 different prestored “virtual diabetic patients” on the internet or create new “patients” with user-generated regimens. Multiple simulations can be run, with graphical results viewed via a standard web-browser window. To date, over 637,500 diabetes simulations have been run at AIDA online, from all over the world. Conclusions. AIDA online's functionality is similar to the downloadable AIDA program, but the mode of implementation and usage is different. An advantage to utilising a server-based application is the flexibility that can be offered. New modules can be added quickly to the online simulator. This has facilitated the development of refinements to AIDA online, which have instantaneously become available around the world, with no further local downloads or installations being required. PMID:24511312

  11. Quantum walks and discrete gauge theories

    NASA Astrophysics Data System (ADS)

    Arnault, Pablo; Debbasch, Fabrice

    2016-05-01

    A particular example is produced to prove that quantum walks can be used to simulate full-fledged discrete gauge theories. A family of two-dimensional walks is introduced and its continuous limit is shown to coincide with the dynamics of a Dirac fermion coupled to arbitrary electromagnetic fields. The electromagnetic interpretation is extended beyond the continuous limit by proving that these discrete-time quantum walks (DTQWs) exhibit an exact discrete local U(1) gauge invariance and possess a discrete gauge-invariant conserved current. A discrete gauge-invariant electromagnetic field is also constructed and that field is coupled to the conserved current by a discrete generalization of Maxwell equations. The dynamics of the DTQWs under crossed electric and magnetic fields is finally explored outside the continuous limit by numerical simulations. Bloch oscillations and the so-called E ×B drift are recovered in the weak-field limit. Localization is observed for some values of the gauge fields.

  12. Discrete monotron oscillator

    SciTech Connect

    Carlsten, B.E.; Haynes, W.B.

    1996-08-01

    The authors theoretically and numerically investigate the operation and behavior of the discrete monotron oscillator, a novel high-power microwave source. The discrete monotron differs from conventional monotrons and transit time oscillators by shielding the electron beam from the monotron cavity`s RF fields except at two distinct locations. This makes the discrete monotron act more like a klystron than a distributed traveling wave device. As a result, the oscillator has higher efficiency and can operate with higher beam powers than other single cavity oscillators and has more stable operation without requiring a seed input signal than mildly relativistic, intense-beam klystron oscillators.

  13. A discrete control model of PLANT

    NASA Technical Reports Server (NTRS)

    Mitchell, C. M.

    1985-01-01

    A model of the PLANT system using the discrete control modeling techniques developed by Miller is described. Discrete control models attempt to represent in a mathematical form how a human operator might decompose a complex system into simpler parts and how the control actions and system configuration are coordinated so that acceptable overall system performance is achieved. Basic questions include knowledge representation, information flow, and decision making in complex systems. The structure of the model is a general hierarchical/heterarchical scheme which structurally accounts for coordination and dynamic focus of attention. Mathematically, the discrete control model is defined in terms of a network of finite state systems. Specifically, the discrete control model accounts for how specific control actions are selected from information about the controlled system, the environment, and the context of the situation. The objective is to provide a plausible and empirically testable accounting and, if possible, explanation of control behavior.

  14. Discrete Element Modeling of Drop Tests

    NASA Astrophysics Data System (ADS)

    Wang, Yuannian; Tonon, Fulvio

    2012-09-01

    A discrete element code with impact model has been developed and calibrated to simulate the dynamic behavior of rock materials, with special regard to rock fragmentation upon impact during rock-fall analysis. The paper summarizes the discrete element code, the calibration algorithms developed to identify the model microparameters, and the impact model. Experimental work on drop tests is then used to validate the code on modeling impact fragmentation. It has been found that the developed discrete element code and impact model can reasonably simulate rock fragmentation in drop tests. The use of the discrete element code and impact model can provide good reference results in evaluating impact fragmentation in rock-fall analysis.

  15. Full-Scale Dynamic Analysis of an Innovative Rockfall Fence Under Impact Using the Discrete Element Method: from the Local Scale to the Structure Scale

    NASA Astrophysics Data System (ADS)

    Bertrand, D.; Trad, A.; Limam, A.; Silvani, C.

    2012-09-01

    In order to protect infrastructures against rockfalls, civil-engineered mitigation measures are widely used. Flexible metallic fences are particularly well suited to stop the propagation of blocks of rock whose kinetic energy can reach 5000 kJ before impact. This paper focuses on the design of highly flexible rockfall fences under the new European guideline ETAG027. The experimental testing and the numerical modeling using the discrete element method (DEM) of a new metallic rockfall fence are presented. Several scales of study were considered; the mesh, the net and the entire structure. The calibration of the DEM models is described and a parametrical study is proposed. The latter aims to underline the type of information that can be obtained from numerical simulations of such a system to enhance its design.

  16. The Discrete Hanging Cable

    ERIC Educational Resources Information Center

    Peters, James V.

    2004-01-01

    Using the methods of finite difference equations the discrete analogue of the parabolic and catenary cable are analysed. The fibonacci numbers and the golden ratio arise in the treatment of the catenary.

  17. Discretizations of axisymmetric systems

    NASA Astrophysics Data System (ADS)

    Frauendiener, Jörg

    2002-11-01

    In this paper we discuss stability properties of various discretizations for axisymmetric systems including the so-called cartoon method which was proposed by Alcubierre et al. for the simulation of such systems on Cartesian grids. We show that within the context of the method of lines such discretizations tend to be unstable unless one takes care in the way individual singular terms are treated. Examples are given for the linear axisymmetric wave equation in flat space.

  18. A comparison of the lattice discrete particle method to the finite-element method and the K&C material model for simulating the static and dynamic response of concrete.

    SciTech Connect

    Smith, Jovanca J.; Bishop, Joseph E.

    2013-11-01

    This report summarizes the work performed by the graduate student Jovanca Smith during a summer internship in the summer of 2012 with the aid of mentor Joe Bishop. The projects were a two-part endeavor that focused on the use of the numerical model called the Lattice Discrete Particle Model (LDPM). The LDPM is a discrete meso-scale model currently used at Northwestern University and the ERDC to model the heterogeneous quasi-brittle material, concrete. In the first part of the project, LDPM was compared to the Karagozian and Case Concrete Model (K&C) used in Presto, an explicit dynamics finite-element code, developed at Sandia National Laboratories. In order to make this comparison, a series of quasi-static numerical experiments were performed, namely unconfined uniaxial compression tests on four varied cube specimen sizes, three-point bending notched experiments on three proportional specimen sizes, and six triaxial compression tests on a cylindrical specimen. The second part of this project focused on the application of LDPM to simulate projectile perforation on an ultra high performance concrete called CORTUF. This application illustrates the strengths of LDPM over traditional continuum models.

  19. Global stability for a class of discrete SIR epidemic models.

    PubMed

    Enatsu, Yoichi; Nakata, Yukihiko; Muroya, Yoshiaki

    2010-04-01

    In this paper, we propose a class of discrete SIR epidemic models which are derived from SIR epidemic models with distributed delays by using a variation of the backward Euler method. Applying a Lyapunov functional technique, it is shown that the global dynamics of each discrete SIR epidemic model are fully determined by a single threshold parameter and the effect of discrete time delays are harmless for the global stability of the endemic equilibrium of the model. PMID:20462293

  20. Web Operational Status Boards

    Energy Science and Technology Software Center (ESTSC)

    2004-04-16

    Web Operational Status Boards (WebOSB)is a web-based application designed to acquire, display, and update highly dynamic status information between multiple users and jurisdictions. WebOSB is able to disseminate real-time status information—support the timely sharing of information—with constant, dynamic updates via personal computers and the Internet between emergency operations centers (EOCs), incident command centers, and to users outside the EOC who need to know the information (hospitals, shelters, schools). The WebOSB application far exceeds outdated information-sharingmore » methods used by emergency workers: whiteboards, Word and Excel documents, or even locality-specific Web sites. WebOSB’s capabilities include the following elements: - Secure access. Multiple users can access information on WebOSB from any personal computer with Internet access and a secure ID. Privileges are use to control access and distribution of status information and to identify users who are authorized to add or edit information. - Simultaneous update. WebOSB provides options for users to add, display, and update dynamic information simultaneously at all locations involved in the emergency management effort, A single status board can be updated from multiple locations enabling shelters and hospitals to post bed availability or list decontamination capability. - On-the-fly modification. Allowing the definition of an existing status board to be modified on-the-fly can be an asset during an emergency, where information requirements can change quickly. The status board designer feature allows an administrator to quickly define, modi,, add to, and implement new status boards in minutes without needing the help of Web designers and computer programmers. - Publisher/subscriber notification. As a subscriber, each user automatically receives notification of any new information relating to specific status boards. The publisher/subscriber feature automatically notified each user of any

  1. Discrete Events as Units of Perceived Time

    ERIC Educational Resources Information Center

    Liverence, Brandon M.; Scholl, Brian J.

    2012-01-01

    In visual images, we perceive both space (as a continuous visual medium) and objects (that inhabit space). Similarly, in dynamic visual experience, we perceive both continuous time and discrete events. What is the relationship between these units of experience? The most intuitive answer may be similar to the spatial case: time is perceived as an…

  2. Effect of dislocation structure on the strain rate dependence of the flow stress in a 2D discrete dislocation dynamics model

    NASA Astrophysics Data System (ADS)

    Song, Hengxu; Papanikolaou, Stefanos; van der Giessen, Erik

    2015-03-01

    It is well known for almost three decades that crystal plasticity in metals, such as Cu, is strongly rate dependent at strain rates higher than 10⌃3/s. This rate sensitivity is typically attributed to dislocation drag effects, but there appears to be a large range of possible high-rate-sensitivity exponents, depending on the sample and the experimental group. Thus, one may hypothesize that the dislocation structure has a strong influence on these effects. We elucidate the origins of rate effects in crystal plasticity and their connection with relaxed, before applying stress, dislocation structures by investigating simple bending in a model of discrete dislocation plasticity in two dimensions. We find that the high-strain-rate sensitivity changes significantly as a function of strain, different material treatment (annealed or not) and properties of dislocation sources (surface vs. bulk nucleation). We characterize in detail the emerging patterning in the dislocation structure and we provide predictions for future experiments on the dependence of the rate sensitivity on dislocation-related characteristics.

  3. Stochastic differential equations as a tool to regularize the parameter estimation problem for continuous time dynamical systems given discrete time measurements.

    PubMed

    Leander, Jacob; Lundh, Torbjörn; Jirstrand, Mats

    2014-05-01

    In this paper we consider the problem of estimating parameters in ordinary differential equations given discrete time experimental data. The impact of going from an ordinary to a stochastic differential equation setting is investigated as a tool to overcome the problem of local minima in the objective function. Using two different models, it is demonstrated that by allowing noise in the underlying model itself, the objective functions to be minimized in the parameter estimation procedures are regularized in the sense that the number of local minima is reduced and better convergence is achieved. The advantage of using stochastic differential equations is that the actual states in the model are predicted from data and this will allow the prediction to stay close to data even when the parameters in the model is incorrect. The extended Kalman filter is used as a state estimator and sensitivity equations are provided to give an accurate calculation of the gradient of the objective function. The method is illustrated using in silico data from the FitzHugh-Nagumo model for excitable media and the Lotka-Volterra predator-prey system. The proposed method performs well on the models considered, and is able to regularize the objective function in both models. This leads to parameter estimation problems with fewer local minima which can be solved by efficient gradient-based methods. PMID:24631177

  4. A mathematical analysis of the effects of Hebbian learning rules on the dynamics and structure of discrete-time random recurrent neural networks.

    PubMed

    Siri, Benoît; Berry, Hugues; Cessac, Bruno; Delord, Bruno; Quoy, Mathias

    2008-12-01

    We present a mathematical analysis of the effects of Hebbian learning in random recurrent neural networks, with a generic Hebbian learning rule, including passive forgetting and different timescales, for neuronal activity and learning dynamics. Previous numerical work has reported that Hebbian learning drives the system from chaos to a steady state through a sequence of bifurcations. Here, we interpret these results mathematically and show that these effects, involving a complex coupling between neuronal dynamics and synaptic graph structure, can be analyzed using Jacobian matrices, which introduce both a structural and a dynamical point of view on neural network evolution. Furthermore, we show that sensitivity to a learned pattern is maximal when the largest Lyapunov exponent is close to 0. We discuss how neural networks may take advantage of this regime of high functional interest. PMID:18624656

  5. A discrete fractional random transform

    NASA Astrophysics Data System (ADS)

    Liu, Zhengjun; Zhao, Haifa; Liu, Shutian

    2005-11-01

    We propose a discrete fractional random transform based on a generalization of the discrete fractional Fourier transform with an intrinsic randomness. Such discrete fractional random transform inheres excellent mathematical properties of the fractional Fourier transform along with some fantastic features of its own. As a primary application, the discrete fractional random transform has been used for image encryption and decryption.

  6. IsoWeb: A Bayesian Isotope Mixing Model for Diet Analysis of the Whole Food Web

    PubMed Central

    Kadoya, Taku; Osada, Yutaka; Takimoto, Gaku

    2012-01-01

    Quantitative description of food webs provides fundamental information for the understanding of population, community, and ecosystem dynamics. Recently, stable isotope mixing models have been widely used to quantify dietary proportions of different food resources to a focal consumer. Here we propose a novel mixing model (IsoWeb) that estimates diet proportions of all consumers in a food web based on stable isotope information. IsoWeb requires a topological description of a food web, and stable isotope signatures of all consumers and resources in the web. A merit of IsoWeb is that it takes into account variation in trophic enrichment factors among different consumer-resource links. Sensitivity analysis using realistic hypothetical food webs suggests that IsoWeb is applicable to a wide variety of food webs differing in the number of species, connectance, sample size, and data variability. Sensitivity analysis based on real topological webs showed that IsoWeb can allow for a certain level of topological uncertainty in target food webs, including erroneously assuming false links, omission of existent links and species, and trophic aggregation into trophospecies. Moreover, using an illustrative application to a real food web, we demonstrated that IsoWeb can compare the plausibility of different candidate topologies for a focal web. These results suggest that IsoWeb provides a powerful tool to analyze food-web structure from stable isotope data. We provide R and BUGS codes to aid efficient applications of IsoWeb. PMID:22848427

  7. Bacterioplankton communities of Crater Lake, OR: Dynamic changes with euphotic zone food web structure and stable deep water populations

    USGS Publications Warehouse

    Urbach, E.; Vergin, K.L.; Larson, G.L.; Giovannoni, S.J.

    2007-01-01

    The distribution of bacterial and archaeal species in Crater Lake plankton varies dramatically over depth and with time, as assessed by hybridization of group-specific oligonucleotides to RNA extracted from lakewater. Nonmetric, multidimensional scaling (MDS) analysis of relative bacterial phylotype densities revealed complex relationships among assemblages sampled from depth profiles in July, August and September of 1997 through 1999. CL500-11 green nonsulfur bacteria (Phylum Chloroflexi) and marine Group I crenarchaeota are consistently dominant groups in the oxygenated deep waters at 300 and 500 m. Other phylotypes found in the deep waters are similar to surface and mid-depth populations and vary with time. Euphotic zone assemblages are dominated either by ??-proteobacteria or CL120-10 verrucomicrobia, and ACK4 actinomycetes. MDS analyses of euphotic zone populations in relation to environmental variables and phytoplankton and zooplankton population structures reveal apparent links between Daphnia pulicaria zooplankton population densities and microbial community structure. These patterns may reflect food web interactions that link kokanee salmon population densities to community structure of the bacterioplankton, via fish predation on Daphnia with cascading consequences to Daphnia bacterivory and predation on bacterivorous protists. These results demonstrate a stable bottom-water microbial community. They also extend previous observations of food web-driven changes in euphotic zone bacterioplankton community structure to an oligotrophic setting. ?? 2007 Springer Science+Business Media B.V.

  8. Simulating the multicellular homeostasis with a cell-based discrete receptor dynamics model: The non-mutational origin of cancer and aging.

    PubMed

    Lou, Yuting; Chen, Yu

    2016-09-01

    The purpose of the study is to investigate the multicellular homeostasis in epithelial tissues over very large timescales. Inspired by the receptor dynamics of IBCell model proposed by Rejniak et al. an on-grid agent-based model for multicellular system is constructed. Instead of observing the multicellular architectural morphologies, the diversity of homeostatic states is quantitatively analyzed through a substantial number of simulations by measuring three new order parameters, the phenotypic population structure, the average proliferation age and the relaxation time to stable homeostasis. Nearby the interfaces of distinct homeostatic phases in 3D phase diagrams of the three order parameters, intermediate quasi-stable phases of slow dynamics that features quasi-stability with a large spectrum of relaxation timescales are found. A further exploration on the static and dynamic correlations among the three order parameters reveals that the quasi-stable phases evolve towards two terminations, tumorigenesis and degeneration, which are respectively accompanied by rejuvenation and aging. With the exclusion of the environmental impact and the mutational strategies, the results imply that cancer and aging may share the non-mutational origin in the intrinsic slow dynamics of the multicellular systems. PMID:27196967

  9. Two-dimensional discrete Ginzburg-Landau solitons

    SciTech Connect

    Efremidis, Nikolaos K.; Christodoulides, Demetrios N.; Hizanidis, Kyriakos

    2007-10-15

    We study the two-dimensional discrete Ginzburg-Landau equation. In the linear limit, the dispersion and gain curves as well as the diffraction pattern are determined analytically. In the nonlinear case, families of two-dimensional discrete solitons are found numerically as well as approximately in the high-confinement limit. The instability dynamics are analyzed by direct simulations.

  10. WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics

    PubMed Central

    Knight, Christopher J.; Hub, Jochen S.

    2015-01-01

    Small- and wide-angle X-ray scattering (SWAXS) has evolved into a powerful tool to study biological macromolecules in solution. The interpretation of SWAXS curves requires their accurate predictions from structural models. Such predictions are complicated by scattering contributions from the hydration layer and by effects from thermal fluctuations. Here, we describe the new web server WAXSiS (WAXS in solvent) that computes SWAXS curves based on explicit-solvent all-atom molecular dynamics (MD) simulations (http://waxsis.uni-goettingen.de/). The MD simulations provide a realistic model for both the hydration layer and the excluded solvent, thereby avoiding any solvent-related fitting parameters, while naturally accounting for thermal fluctuations. PMID:25855813

  11. Discrete breathers in crystals

    NASA Astrophysics Data System (ADS)

    Dmitriev, S. V.; Korznikova, E. A.; Baimova, Yu A.; Velarde, M. G.

    2016-05-01

    It is well known that periodic discrete defect-containing systems, in addition to traveling waves, support vibrational defect-localized modes. It turned out that if a periodic discrete system is nonlinear, it can support spatially localized vibrational modes as exact solutions even in the absence of defects. Since the nodes of the system are all on equal footing, it is only through the special choice of initial conditions that a group of nodes can be found on which such a mode, called a discrete breather (DB), will be excited. The DB frequency must be outside the frequency range of the small-amplitude traveling waves. Not resonating with and expending no energy on the excitation of traveling waves, a DB can theoretically conserve its vibrational energy forever provided no thermal vibrations or other perturbations are present. Crystals are nonlinear discrete systems, and the discovery in them of DBs was only a matter of time. It is well known that periodic discrete defect-containing systems support both traveling waves and vibrational defect-localized modes. It turns out that if a periodic discrete system is nonlinear, it can support spatially localized vibrational modes as exact solutions even in the absence of defects. Because the nodes of the system are all on equal footing, only a special choice of the initial conditions allows selecting a group of nodes on which such a mode, called a discrete breather (DB), can be excited. The DB frequency must be outside the frequency range of small-amplitude traveling waves. Not resonating with and expending no energy on the excitation of traveling waves, a DB can theoretically preserve its vibrational energy forever if no thermal vibrations or other perturbations are present. Crystals are nonlinear discrete systems, and the discovery of DBs in them was only a matter of time. Experimental studies of DBs encounter major technical difficulties, leaving atomistic computer simulations as the primary investigation tool. Despite

  12. Deformed discrete symmetries

    NASA Astrophysics Data System (ADS)

    Arzano, Michele; Kowalski-Glikman, Jerzy

    2016-09-01

    We construct discrete symmetry transformations for deformed relativistic kinematics based on group valued momenta. We focus on the specific example of κ-deformations of the Poincaré algebra with associated momenta living on (a sub-manifold of) de Sitter space. Our approach relies on the description of quantum states constructed from deformed kinematics and the observable charges associated with them. The results we present provide the first step towards the analysis of experimental bounds on the deformation parameter κ to be derived via precision measurements of discrete symmetries and CPT.

  13. Traffic-based feedback on the web.

    PubMed

    Aizen, Jonathan; Huttenlocher, Daniel; Kleinberg, Jon; Novak, Antal

    2004-04-01

    Usage data at a high-traffic web site can expose information about external events and surges in popularity that may not be accessible solely from analyses of content and link structure. We consider sites that are organized around a set of items available for purchase or download, consider, for example, an e-commerce site or collection of online research papers, and we study a simple indicator of collective user interest in an item, the batting average, defined as the fraction of visits to an item's description that result in an acquisition of that item. We develop a stochastic model for identifying points in time at which an item's batting average experiences significant change. In experiments with usage data from the Internet Archive, we find that such changes often occur in an abrupt, discrete fashion, and that these changes can be closely aligned with events such as the highlighting of an item on the site or the appearance of a link from an active external referrer. In this way, analyzing the dynamics of item popularity at an active web site can help characterize the impact of a range of events taking place both on and off the site. PMID:14709676

  14. Traffic-based feedback on the web

    PubMed Central

    Aizen, Jonathan; Huttenlocher, Daniel; Kleinberg, Jon; Novak, Antal

    2004-01-01

    Usage data at a high-traffic web site can expose information about external events and surges in popularity that may not be accessible solely from analyses of content and link structure. We consider sites that are organized around a set of items available for purchase or download, consider, for example, an e-commerce site or collection of online research papers, and we study a simple indicator of collective user interest in an item, the batting average, defined as the fraction of visits to an item's description that result in an acquisition of that item. We develop a stochastic model for identifying points in time at which an item's batting average experiences significant change. In experiments with usage data from the Internet Archive, we find that such changes often occur in an abrupt, discrete fashion, and that these changes can be closely aligned with events such as the highlighting of an item on the site or the appearance of a link from an active external referrer. In this way, analyzing the dynamics of item popularity at an active web site can help characterize the impact of a range of events taking place both on and off the site. PMID:14709676

  15. g-FLUA2H: a web-based application to study the dynamics of animal-to-human mutation transmission for influenza viruses

    PubMed Central

    2015-01-01

    g-FLUA2H is a web-based application focused on the analysis of the dynamics of influenza virus animal-to-human (A2H) mutation transmissions. The application only requires the viral protein sequences from both the animal and human host populations as input datasets. The comparative analyses between the co-aligned sequences of the two viral populations is based on a sliding window approach of size nine for statistical significance and data application to the major histocompatibility complex (MHC) and T-cell receptor (TCR) immune response mechanisms. The sequences at each of the aligned overlapping nonamer positions for the respective virus hosts are classified as four patterns of characteristic diversity motifs, as a basis for quantitative analyses: (i) "index", the most prevalent sequence; (ii) "major" variant, the second most common sequence and the single most prevalent variant of the index, with at least one amino acid mutation; (iii) "minor" variants, multiple different sequences, each with an incidence (percent occurrence) less than that of the major variant; and (iv) "unique" variants, each with only one occurrence in the alignment. The diversity motifs and their incidences at each of the nonamer positions allow evaluation of the mutation transmission dynamics and selectivity of the viral sequences in relation to the animal and the human hosts. g-FLUA2H is facilitated by a grid back-end for parallel processing of large sequence datasets. The web-application is publicly available at http://bioinfo.perdanauniversity.edu.my/g-FLUA2H. It can be used for a detailed characterization of the composition and incidence of mutations present in the proteomes of influenza viruses from animal and human host populations, for a better understanding of host tropism. PMID:26680743

  16. A user-friendly, dynamic web environment for remote data browsing and analysis of multiparametric geophysical data within the MULTIMO project

    NASA Astrophysics Data System (ADS)

    Carniel, Roberto; Di Cecca, Mauro; Jaquet, Olivier

    2006-05-01

    In the framework of the EU-funded project "Multi-disciplinary monitoring, modelling and forecasting of volcanic hazard" (MULTIMO), multiparametric data have been recorded at the MULTIMO station in Montserrat. Moreover, several other long time series, recorded at Montserrat and at other volcanoes, have been acquired in order to test stochastic and deterministic methodologies under development. Creating a general framework to handle data efficiently is a considerable task even for homogeneous data. In the case of heterogeneous data, this becomes a major issue. A need for a consistent way of browsing such a heterogeneous dataset in a user-friendly way therefore arose. Additionally, a framework for applying the calculation of the developed dynamical parameters on the data series was also needed in order to easily keep these parameters under control, e.g. for monitoring, research or forecasting purposes. The solution which we present is completely based on Open Source software, including Linux operating system, MySql database management system, Apache web server, Zope application server, Scilab math engine, Plone content management framework, Unified Modelling Language. From the user point of view the main advantage is the possibility of browsing through datasets recorded on different volcanoes, with different instruments, with different sampling frequencies, stored in different formats, all via a consistent, user- friendly interface that transparently runs queries to the database, gets the data from the main storage units, generates the graphs and produces dynamically generated web pages to interact with the user. The involvement of third parties for continuing the development in the Open Source philosophy and/or extending the application fields is now sought.

  17. Experiments in Web Storytelling

    ERIC Educational Resources Information Center

    Levine, Alan

    2011-01-01

    Recognized as one of our oldest yet still vital forms of communication, storytelling offers new opportunity when it takes place on the web. Even our every day activities of writing email, creating presentations, or participating in social media can become more dynamic when considered stories. A digital storyteller from outside the museum field…

  18. Structure and dynamics of food webs in the water column on shelf and slope grounds of the western Mediterranean

    NASA Astrophysics Data System (ADS)

    Valls, M.; Sweeting, C. J.; Olivar, M. P.; Fernández de Puelles, M. L.; Pasqual, C.; Polunin, N. V. C.; Quetglas, A.

    2014-10-01

    Benthic-pelagic coupling is an important process connecting species throughout the water column, particularly, in deep-sea systems where faunal assemblages can be dense if indirectly sustained by production from the above. Through stable isotope analyses, this study explored the sources of production, trophic structure, and bentho-pelagic coupling in two locations with contrasting oceanographic conditions from the western Mediterranean, in the Balearic (BsB) and the Algerian (AsB) sub-basins. The samples of 89 dominant species (23 decapods, 19 cephalopods, 33 fishes, among the other taxa), inhabiting the hyperbenthic and pelagic domains, from the shelf break (250 m), upper slope (650 m), and middle slope (850 m) were analyzed. Results suggested long food webs of approximately four trophic levels (TrLs) that were sustained by planktonic source material in shallower waters and degraded particulate organic matter of planktonic origin in deeper waters. Most of the collected species (70%) occupied intermediate trophic positions between the 3rd and 4th TrLs. The species δ15N and δ13C values exhibited a broad range, consistent with the high diversity that might be attributed to the oligotrophic conditions. As the depth increased, stronger segregation occurred between the trophic groups, and spatial differences were found among consumers of the two locations. Species in the AsB always had consistently higher δ15N values than in the BsB, which could possibly be attributed to the basal δ15N that was present through the food web. Despite the contrasting basin characteristics, a similarly close bentho-pelagic coupling pattern was observed at both locations, except at the deepest ground, especially at the AsB, where the mean δ13C values from the hyperbenthic and pelagic compartments were more distant. This could be related to the higher degree of reworking of organic matter in the AsB. Overall, these findings suggested the need for a depth-stratified approach to analyze

  19. Web Engineering

    SciTech Connect

    White, Bebo

    2003-06-23

    Web Engineering is the application of systematic, disciplined and quantifiable approaches to development, operation, and maintenance of Web-based applications. It is both a pro-active approach and a growing collection of theoretical and empirical research in Web application development. This paper gives an overview of Web Engineering by addressing the questions: (a) why is it needed? (b) what is its domain of operation? (c) how does it help and what should it do to improve Web application development? and (d) how should it be incorporated in education and training? The paper discusses the significant differences that exist between Web applications and conventional software, the taxonomy of Web applications, the progress made so far and the research issues and experience of creating a specialization at the master's level. The paper reaches a conclusion that Web Engineering at this stage is a moving target since Web technologies are constantly evolving, making new types of applications possible, which in turn may require innovations in how they are built, deployed and maintained.

  20. Dynamical approach study of spurious steady-state numerical solutions of nonlinear differential equations. I - The dynamics of time discretization and its implications for algorithm development in computational fluid dynamics

    NASA Technical Reports Server (NTRS)

    Yee, H. C.; Sweby, P. K.; Griffiths, D. F.

    1991-01-01

    Spurious stable as well as unstable steady state numerical solutions, spurious asymptotic numerical solutions of higher period, and even stable chaotic behavior can occur when finite difference methods are used to solve nonlinear differential equations (DE) numerically. The occurrence of spurious asymptotes is independent of whether the DE possesses a unique steady state or has additional periodic solutions and/or exhibits chaotic phenomena. The form of the nonlinear DEs and the type of numerical schemes are the determining factor. In addition, the occurrence of spurious steady states is not restricted to the time steps that are beyond the linearized stability limit of the scheme. In many instances, it can occur below the linearized stability limit. Therefore, it is essential for practitioners in computational sciences to be knowledgeable about the dynamical behavior of finite difference methods for nonlinear scalar DEs before the actual application of these methods to practical computations. It is also important to change the traditional way of thinking and practices when dealing with genuinely nonlinear problems. In the past, spurious asymptotes were observed in numerical computations but tended to be ignored because they all were assumed to lie beyond the linearized stability limits of the time step parameter delta t. As can be seen from the study, bifurcations to and from spurious asymptotic solutions and transitions to computational instability not only are highly scheme dependent and problem dependent, but also initial data and boundary condition dependent, and not limited to time steps that are beyond the linearized stability limit.

  1. The locust olfactory system as a case study for modeling dynamics of neurobiological networks: from discrete time neurons to continuous time neurons.

    PubMed

    Quenet, B; Horcholle-Bossavit, G

    2007-11-01

    Both chaotic and periodic activities are observed in networks of the central nervous systems. We choose the locust olfactory system as a good case study to analyze the relationships between networks' structure and the types of dynamics involved in coding mechanisms. In our modeling approach, we first build a fully connected recurrent network of synchronously updated McCulloch and Pitts neurons (MC-P type). In order to measure the use of the temporal dimension in the complex spatio-temporal patterns produced by the networks, we have defined an index the Normalized Euclidian Distance NED. We find that for appropriate parameters of input and connectivity, when adding some strong connections to the initial random synaptic matrices, it was easy to get the emergence of both robust oscillations and distributed synchrony in the spatiotemporal patterns. Then, in order to validate the MC-P model as a tool for analysis for network properties, we examine the dynamic behavior of networks of continuous time model neuron (Izhikevitch Integrate and Fire model -IFI-), implementing the same network characteristics. In both models, similarly to biological PN, the activity of excitatory neurons are phase-locked to different cycles of oscillations which remind the ones of the local field potential (LFP), and nevertheless exhibit dynamic behavior complex enough to be the basis of spatio-temporal codes. PMID:18075120

  2. What Is Discrete Mathematics?

    ERIC Educational Resources Information Center

    Sharp, Karen Tobey

    This paper cites information received from a number of sources, e.g., mathematics teachers in two-year colleges, publishers, and convention speakers, about the nature of discrete mathematics and about what topics a course in this subject should contain. Note is taken of the book edited by Ralston and Young which discusses the future of college…

  3. The Geospatial Web and Local Geographical Education

    ERIC Educational Resources Information Center

    Harris, Trevor M.; Rouse, L. Jesse; Bergeron, Susan J.

    2010-01-01

    Recent innovations in the Geospatial Web represent a paradigm shift in Web mapping by enabling educators to explore geography in the classroom by dynamically using a rapidly growing suite of impressive online geospatial tools. Coupled with access to spatial data repositories and User-Generated Content, the Geospatial Web provides a powerful…

  4. On the origin of turbulent cascades in the dynamic pressure and plasma flux from the discrete nonlinear ones: the role of outer magnetospheric resonances and their possible input into the trans-boundary transport.

    NASA Astrophysics Data System (ADS)

    Savin, Sergey; Büchner, Jörg; Zelenyi, Lev; Kronberg, Elena; Klimov, Stanislav; Kozak, Lyudmila; Blecki, Jan; Budaev, Viacheslav; Nemecek, Zdenek; Safrankova, Jana; Skalsky, Alexander; Amata, Ermanno

    The identification of the role of the Supersonic Plasma Streams (SPS) interactions with the Earth magnetosphere should be interesting in the context of the planetary and astrophysical magnetospheres and of that of laboratory plasmas. The interactions can be inherently non-local and non-equilibrium, and even explosive due to both solar wind (SW) induced and self-generated coherent structures in the multiscale system with the scales ranging from the micro to global scales. We study the main fundamental processes arising from the SPS cascading and interactions with surface and cavity resonances in the Earth’s magnetosphere, using multi-spacecraft data (SPECTR-R, DOUBLE STAR, CLUSTER, GEOTAIL, ACE, WIND etc.). We will address the following key problems to advance our understanding of anomalous transport and boundary dynamics: - the BS disturbances role in the SPS production; it requires to base on the relevant databases from the CLUSTER/ DOUBLE STAR/ GEOTAIL/SPECTR-R/ ACE/ WIND spacecraft, which will be used for a statistical analysis targeting the SPS statistical features as extreme events. - analysis of the SPS generation mechanisms, e.g., by bow shock (BS) surface or magnetosheath (MSH) cavity resonances, triggering by interplanetary shocks, solar wind (SW) dynamic pressure jumps, foreshock nonlinear structures, etc. - pumping of substantial part of the SW kinetic energy into the BS membrane and MSH cavity modes and initiate further cascades towards higher frequencies. Accordingly we present the multipoint studies of the SPS and of related nonlinear discrete cascades (carried generally by the SPS), along with the transformation of discrete cascades of the dynamic pressure into turbulent cascades. - explorations of spectral and bi-spectral cross-correlations in SW, foreshock, MSH and in vicinity of BS and magnetopause (MP) would demonstrate that both inflow and outflow into/ from magnetosphere can be modulated by the SPS and by the related outer magnetospheric

  5. SVG-Based Web Publishing

    NASA Astrophysics Data System (ADS)

    Gao, Jerry Z.; Zhu, Eugene; Shim, Simon

    2003-01-01

    With the increasing applications of the Web in e-commerce, advertising, and publication, new technologies are needed to improve Web graphics technology due to the current limitation of technology. The SVG (Scalable Vector Graphics) technology is a new revolutionary solution to overcome the existing problems in the current web technology. It provides precise and high-resolution web graphics using plain text format commands. It sets a new standard for web graphic format to allow us to present complicated graphics with rich test fonts and colors, high printing quality, and dynamic layout capabilities. This paper provides a tutorial overview about SVG technology and its essential features, capability, and advantages. The reports a comparison studies between SVG and other web graphics technologies.

  6. Web Service

    MedlinePlus

    ... www.nlm.nih.gov/medlineplus/webservices.html MedlinePlus Web Service To use the sharing features on this ... please enable JavaScript. MedlinePlus offers a search-based Web service that provides access to MedlinePlus health topic ...

  7. A Two-Timescale Discretization Scheme for Collocation

    NASA Technical Reports Server (NTRS)

    Desai, Prasun; Conway, Bruce A.

    2004-01-01

    The development of a two-timescale discretization scheme for collocation is presented. This scheme allows a larger discretization to be utilized for smoothly varying state variables and a second finer discretization to be utilized for state variables having higher frequency dynamics. As such. the discretization scheme can be tailored to the dynamics of the particular state variables. In so doing. the size of the overall Nonlinear Programming (NLP) problem can be reduced significantly. Two two-timescale discretization architecture schemes are described. Comparison of results between the two-timescale method and conventional collocation show very good agreement. Differences of less than 0.5 percent are observed. Consequently. a significant reduction (by two-thirds) in the number of NLP parameters and iterations required for convergence can be achieved without sacrificing solution accuracy.

  8. Classicality in discrete Wigner functions

    SciTech Connect

    Cormick, Cecilia; Galvao, Ernesto F.; Gottesman, Daniel; Paz, Juan Pablo; Pittenger, Arthur O.

    2006-01-15

    Gibbons et al., [Phys. Rev. A 70, 062101 (2004)] have recently defined discrete Wigner functions W to represent quantum states in a Hilbert space with finite dimension. We show that such a class of Wigner functions W can be defined so that the only pure states having non-negative W for all such functions are stabilizer states, as conjectured by Galvao, [Phys. Rev. A 71, 042302 (2005)]. We also show that the unitaries preserving non-negativity of W for all definitions of W in the class form a subgroup of the Clifford group. This means pure states with non-negative W and their associated unitary dynamics are classical in the sense of admitting an efficient classical simulation scheme using the stabilizer formalism.

  9. Dynamic Interaction: A Measurement Development and Empirical Evaluation of Knowledge Based Systems and Web 2.0 Decision Support Mashups

    ERIC Educational Resources Information Center

    Beemer, Brandon Alan

    2010-01-01

    The research presented in this dissertation focuses on the organizational and consumer need for knowledge based support in unstructured domains, by developing a measurement scale for dynamic interaction. Addressing this need is approached and evaluated from two different perspectives. The first approach is the development of Knowledge Based…

  10. Using SAS/IntrNet for Evaluating Web-Based Courses.

    ERIC Educational Resources Information Center

    Yu, Chong-ho; Jannasch-Pennell, Angel; Digangi, Sam; Wasson, Barnaby

    1998-01-01

    Describes the use of SAS/IntrNet, a Web service rather than a Web server, to evaluate and enhance university level Web-based courses. IntrNet provides the ability to create both static and dynamic Web pages, using Web publishing tools to convert SAS output to hypertext markup language for the creation of static Web pages. (Author/LRW)

  11. Discretization chaos - Feedback control and transition to chaos

    NASA Technical Reports Server (NTRS)

    Grantham, Walter J.; Athalye, Amit M.

    1990-01-01

    Problems in the design of feedback controllers for chaotic dynamical systems are considered theoretically, focusing on two cases where chaos arises only when a nonchaotic continuous-time system is discretized into a simpler discrete-time systems (exponential discretization and pseudo-Euler integration applied to Lotka-Volterra competition and prey-predator systems). Numerical simulation results are presented in extensive graphs and discussed in detail. It is concluded that care must be taken in applying standard dynamical-systems methods to control systems that may be discontinuous or nondifferentiable.

  12. Discreteness induced extinction

    NASA Astrophysics Data System (ADS)

    dos Santos, Renato Vieira; da Silva, Linaena Méricy

    2015-11-01

    Two simple models based on ecological problems are discussed from the point of view of non-equilibrium statistical mechanics. It is shown how discrepant may be the results of the models that include spatial distribution with discrete interactions when compared with the continuous analogous models. In the continuous case we have, under certain circumstances, the population explosion. When we take into account the finiteness of the population, we get the opposite result, extinction. We will analyze how these results depend on the dimension d of the space and describe the phenomenon of the "Discreteness Inducing Extinction" (DIE). The results are interpreted in the context of the "paradox of sex", an old problem of evolutionary biology.

  13. Sensor web

    NASA Technical Reports Server (NTRS)

    Delin, Kevin A. (Inventor); Jackson, Shannon P. (Inventor)

    2011-01-01

    A Sensor Web formed of a number of different sensor pods. Each of the sensor pods include a clock which is synchronized with a master clock so that all of the sensor pods in the Web have a synchronized clock. The synchronization is carried out by first using a coarse synchronization which takes less power, and subsequently carrying out a fine synchronization to make a fine sync of all the pods on the Web. After the synchronization, the pods ping their neighbors to determine which pods are listening and responded, and then only listen during time slots corresponding to those pods which respond.

  14. A paradigm for discrete physics

    SciTech Connect

    Noyes, H.P.; McGoveran, D.; Etter, T.; Manthey, M.J.; Gefwert, C.

    1987-01-01

    An example is outlined for constructing a discrete physics using as a starting point the insight from quantum physics that events are discrete, indivisible and non-local. Initial postulates are finiteness, discreteness, finite computability, absolute nonuniqueness (i.e., homogeneity in the absence of specific cause) and additivity.

  15. Factsheets Web Application

    SciTech Connect

    VIGIL,FRANK; REEDER,ROXANA G.

    2000-10-30

    The Factsheets web application was conceived out of the requirement to create, update, publish, and maintain a web site with dynamic research and development (R and D) content. Before creating the site, a requirements discovery process was done in order to accurately capture the purpose and functionality of the site. One of the high priority requirements for the site would be that no specialized training in web page authoring would be necessary. All functions of uploading, creation, and editing of factsheets needed to be accomplished by entering data directly into web form screens generated by the application. Another important requirement of the site was to allow for access to the factsheet web pages and data via the internal Sandia Restricted Network and Sandia Open Network based on the status of the input data. Important to the owners of the web site would be to allow the published factsheets to be accessible to all personnel within the department whether or not the sheets had completed the formal Review and Approval (R and A) process. Once the factsheets had gone through the formal review and approval process, they could then be published both internally and externally based on their individual publication status. An extended requirement and feature of the site would be to provide a keyword search capability to search through the factsheets. Also, since the site currently resides on both the internal and external networks, it would need to be registered with the Sandia search engines in order to allow access to the content of the site by the search engines. To date, all of the above requirements and features have been created and implemented in the Factsheet web application. These have been accomplished by the use of flat text databases, which are discussed in greater detail later in this paper.

  16. Transfer of dipolar gas through the discrete localized mode.

    PubMed

    Bai, Xiao-Dong; Zhang, Ai-Xia; Xue, Ju-Kui

    2013-12-01

    By considering the discrete nonlinear Schrödinger model with dipole-dipole interactions for dipolar condensate, the existence, the types, the stability, and the dynamics of the localized modes in a nonlinear lattice are discussed. It is found that the contact interaction and the dipole-dipole interactions play important roles in determining the existence, the type, and the stability of the localized modes. Because of the coupled effects of the contact interaction and the dipole-dipole interactions, rich localized modes and their stability nature can exist: when the contact interaction is larger and the dipole-dipole interactions is smaller, a discrete bright breather occurs. In this case, while the on-site interaction can stabilize the discrete breather, the dipole-dipole interactions will destabilize the discrete breather; when both the contact interaction and the dipole-dipole interactions are larger, a discrete kink appears. In this case, both the on-site interaction and the dipole-dipole interactions can stabilize the discrete kink, but the discrete kink is more unstable than the ordinary discrete breather. The predicted results provide a deep insight into the dynamics of blocking, filtering, and transfer of the norm in nonlinear lattices for dipolar condensates. PMID:24483540

  17. Discrete instability in the DNA double helix.

    PubMed

    Tabi, Conrad Bertrand; Mohamadou, Alidou; Kofané, Timoléon Crépin

    2009-12-01

    Modulational instability (MI) is explored in the framework of the base-rotor model of DNA dynamics. We show, in fact, that the helicoidal coupling introduced in the spin model of DNA reduces the system to a modified discrete sine-Gordon (sG) equation. The MI criterion is thus modified and displays interesting features because of the helicoidal coupling. In the simulations, we have found that a train of pulses is generated when the lattice is subjected to MI, in agreement with analytical results obtained in a modified discrete sG equation. Also, the competitive effects of the harmonic longitudinal and helicoidal constants on the dynamics of the system are notably pointed out. In the same way, it is shown that MI can lead to energy localization which becomes high for some values of the helicoidal coupling constant. PMID:20059197

  18. The Use of Web Search Engines in Information Science Research.

    ERIC Educational Resources Information Center

    Bar-Ilan, Judit

    2004-01-01

    Reviews the literature on the use of Web search engines in information science research, including: ways users interact with Web search engines; social aspects of searching; structure and dynamic nature of the Web; link analysis; other bibliometric applications; characterizing information on the Web; search engine evaluation and improvement; and…

  19. Discrete sequence prediction and its applications

    NASA Technical Reports Server (NTRS)

    Laird, Philip

    1992-01-01

    Learning from experience to predict sequences of discrete symbols is a fundamental problem in machine learning with many applications. We apply sequence prediction using a simple and practical sequence-prediction algorithm, called TDAG. The TDAG algorithm is first tested by comparing its performance with some common data compression algorithms. Then it is adapted to the detailed requirements of dynamic program optimization, with excellent results.

  20. sandflyDST: a dynamic web-based decision support tool for the morphological identification of sandflies present in Anatolia and mainland Europe, and user study.

    PubMed

    Karakülah, G; Karakuş, M; Suner, A; Demir, S; Arserim, S K; Töz, S; Özbel, Y

    2016-09-01

    Species identification of sandflies is mainly performed according to morphological characters using classical written identification keys. This study introduces a new web-based decision support tool (sandflyDST) for guiding the morphological identification of sandfly species present in Anatolia and mainland Europe and classified in the Phlebotomus and Sergentomyia genera (both: Diptera: Psychodidae). The current version of the tool consists of 111 questions and 36 drawings obtained from classical written keys, and 107 photographs for the quick and easy identification of 26 species of the genus Phlebotomus and four species of the genus Sergentomyia. The tool guides users through a decision tree using yes/no questions about the morphological characters of the specimen. The tool was applied by 30 individuals, who then completed study questionnaires. The results of subsequent analyses indicated that the usability (x‾SUSScore=75.4) and users' level of appreciation (86.6%) of the tool were quite high; almost all of the participants considered recommending the tool to others. The tool may also be useful in training new entomologists and maintaining their level of expertise. This is a dynamic tool and can be improved or upgraded according to feedback. The tool is now available online at http://parasitology.ege.edu.tr/sandflyDST/index.php. PMID:27339389

  1. Effects of eutrophication on the planktonic food web dynamics of marine coastal ecosystems: The case study of two tropical inlets.

    PubMed

    Schmoker, Claire; Russo, Francesca; Drillet, Guillaume; Trottet, Aurore; Mahjoub, Mohamed-Sofiane; Hsiao, Shih-Hui; Larsen, Ole; Tun, Karenne; Calbet, Albert

    2016-08-01

    We studied the plankton dynamics of two semi-enclosed marine coastal inlets of the north of Jurong Island separated by a causeway (SW Singapore; May 2012-April 2013). The west side of the causeway (west station) has residence times of ca. one year and is markedly eutrophic. The east side (east station) has residence times of one month and presents lower nutrient concentrations throughout the year. The higher nutrient concentrations at the west station did not translate into significantly higher concentrations of chlorophyll a, with the exception of some peaks at the end of the South West Monsoon. Microzooplankton were more abundant at the west station. The west station exhibited more variable abundances of copepods during the year than did the east station, which showed a more stable pattern and higher diversity. Despite the higher nutrient concentrations at the west station (never limiting phytoplankton growth), the instantaneous phytoplankton growth rates there were generally lower than at the east station. The phytoplankton communities at the west station were top-down controlled, largely by microzooplankton grazing, whereas those of the east station alternated between top-down and bottom-up control, with mesozooplankton being the major grazers. Overall, the trophic transfer efficiency from nutrients to mesozooplankton in the eutrophic west station was less efficient than in the east station, but this was mostly because a poor use of inorganic nutrients by phytoplankton rather than an inefficient trophic transfer of carbon. Some hypotheses explaining this result are discussed. PMID:27326462

  2. Focused Crawling of the Deep Web Using Service Class Descriptions

    SciTech Connect

    Rocco, D; Liu, L; Critchlow, T

    2004-06-21

    Dynamic Web data sources--sometimes known collectively as the Deep Web--increase the utility of the Web by providing intuitive access to data repositories anywhere that Web access is available. Deep Web services provide access to real-time information, like entertainment event listings, or present a Web interface to large databases or other data repositories. Recent studies suggest that the size and growth rate of the dynamic Web greatly exceed that of the static Web, yet dynamic content is often ignored by existing search engine indexers owing to the technical challenges that arise when attempting to search the Deep Web. To address these challenges, we present DynaBot, a service-centric crawler for discovering and clustering Deep Web sources offering dynamic content. DynaBot has three unique characteristics. First, DynaBot utilizes a service class model of the Web implemented through the construction of service class descriptions (SCDs). Second, DynaBot employs a modular, self-tuning system architecture for focused crawling of the DeepWeb using service class descriptions. Third, DynaBot incorporates methods and algorithms for efficient probing of the Deep Web and for discovering and clustering Deep Web sources and services through SCD-based service matching analysis. Our experimental results demonstrate the effectiveness of the service class discovery, probing, and matching algorithms and suggest techniques for efficiently managing service discovery in the face of the immense scale of the Deep Web.

  3. Coupling of the spatial dynamic of picoplankton and nanoflagellate grazing pressure and carbon flow of the microbial food web in the subtropical pelagic continental shelf ecosystem

    NASA Astrophysics Data System (ADS)

    Chiang, K.-P.; Tsai, A.-Y.; Tsai, P.-J.; Gong, G.-C.; Tsai, S.-F.

    2013-01-01

    In order to investigate the mechanism of spatial dynamics of picoplankton community (bacteria and Synechococcus spp.) and estimate the carbon flux of the microbial food web in the oligotrophic Taiwan Warm Current Water of subtropical marine pelagic ecosystem, we conducted size-fractionation experiments in five cruises by the R/V Ocean Research II during the summers of 2010 and 2011 in the southern East China Sea. We carried out culture experiments using surface water which, according to a temperature-salinity (T-S) diagram, is characterized as oligotrophic Taiwan Current Warm Water. We found a negative correlation bettween bacteria growth rate and temperature, indicating that the active growth of heterotrophic bacteria might be induced by nutrients lifted from deep layer by cold upwelling water. This finding suggests that the area we studied was a bottom-up control pelagic ecosystem. We suggest that the microbial food web of an oligotrophic ecosystem may be changed from top-down control to resource supply (bottom-up control) when a physical force brings nutrient into the oligotrophic ecosystem. Upwelling brings nutrient-rich water to euphotic zone and promotes bacteria growth, increasing the picoplankton biomass which increased the consumption rate of nanoflagellate. The net growth rate (growth rate-grazing rate) becomes negative when the densities of bacteria and Synechococcus spp. are lower than the threshold values. The interaction between growth and grazing will limit the abundances of bacteria (105-106 cells mL-1 and Synechococcus spp. (104-105 cells mL-1) within a narrow range, forming a predator-prey eddy. Meanwhile, 62% of bacteria production and 55% of Synechococcus spp. production are transported to higher trophic level (nanoflagellate), though the cascade effect might cause an underestimation of both percentages of transported carbon. Based on the increasing number of sizes we found in the size-fractionation experiments, we estimated that the predation

  4. Fluctuations and discreteness in diffusion limited growth

    NASA Astrophysics Data System (ADS)

    Devita, Jason P.

    This thesis explores the effects of fluctuations and discreteness on the growth of physical systems where diffusion plays an important role. It focuses on three related problems, all dependent on diffusion in a fundamental way, but each with its own unique challenges. With diffusion-limited aggregation (DLA), the relationship between noisy and noise-free Laplacian growth is probed by averaging the results of noisy growth. By doing so in a channel geometry, we are able to compare to known solutions of the noise-free problem. We see that while the two are comparable, there are discrepancies which are not well understood. In molecular beam epitaxy (MBE), we create efficient computational algorithms, by replacing random walkers (diffusing atoms) with approximately equivalent processes. In one case, the atoms are replaced by a continuum field. Solving for the dynamics of the field yields---in an average sense---the dynamics of the atoms. In the other case, the atoms are treated as individual random-walking particles, but the details of the dynamics are changed to an (approximately) equivalent set of dynamics. This approach involves allowing adatoms to take long hops. We see approximately an order of magnitude speed up for simulating island dynamics, mound growth, and Ostwald ripening. Some ideas from the study of MBE are carried over to the study of front propagation in reaction-diffusion systems. Many of the analytic results about front propagation are derived from continuum models. It is unclear, however, that these results accurately describe the properties of a discrete system. It is reasonable to think that discrete systems will converge to the continuum results when sufficiently many particles are included. However, computational evidence of this is difficult to obtain, since the interesting properties tend to depend on a power law of the logarithm of the number of particles. Thus, the number of particles included in simulations must be exceedingly large. By

  5. Discrete anti-gravity

    SciTech Connect

    Noyes, H.P. ); Starson, S. )

    1991-03-01

    Discrete physics, because it replaces time evolution generated by the energy operator with a global bit-string generator (program universe) and replaces fields'' with the relativistic Wheeler-Feynman action at a distance,'' allows the consistent formulation of the concept of signed gravitational charge for massive particles. The resulting prediction made by this version of the theory is that free anti-particles near the surface of the earth will fall'' up with the same acceleration that the corresponding particles fall down. So far as we can see, no current experimental information is in conflict with this prediction of our theory. The experiment crusis will be one of the anti-proton or anti-hydrogen experiments at CERN. Our prediction should be much easier to test than the small effects which those experiments are currently designed to detect or bound. 23 refs.

  6. Discrete Sibson interpolation.

    PubMed

    Park, Sung W; Linsen, Lars; Kreylos, Oliver; Owens, John D; Hamann, Bernd

    2006-01-01

    Natural-neighbor interpolation methods, such as Sibson's method, are well-known schemes for multivariate data fitting and reconstruction. Despite its many desirable properties, Sibson's method is computationally expensive and difficult to implement, especially when applied to higher-dimensional data. The main reason for both problems is the method's implementation based on a Voronoi diagram of all data points. We describe a discrete approach to evaluating Sibson's interpolant on a regular grid, based solely on finding nearest neighbors and rendering and blending d-dimensional spheres. Our approach does not require us to construct an explicit Voronoi diagram, is easily implemented using commodity three-dimensional graphics hardware, leads to a significant speed increase compared to traditional approaches, and generalizes easily to higher dimensions. For large scattered data sets, we achieve two-dimensional (2D) interpolation at interactive rates and 3D interpolation (3D) with computation times of a few seconds. PMID:16509383

  7. Discrete Pearson distributions

    SciTech Connect

    Bowman, K.O.; Shenton, L.R.; Kastenbaum, M.A.

    1991-11-01

    These distributions are generated by a first order recursive scheme which equates the ratio of successive probabilities to the ratio of two corresponding quadratics. The use of a linearized form of this model will produce equations in the unknowns matched by an appropriate set of moments (assumed to exist). Given the moments we may find valid solutions. These are two cases; (1) distributions defined on the non-negative integers (finite or infinite) and (2) distributions defined on negative integers as well. For (1), given the first four moments, it is possible to set this up as equations of finite or infinite degree in the probability of a zero occurrence, the sth component being a product of s ratios of linear forms in this probability in general. For (2) the equation for the zero probability is purely linear but may involve slowly converging series; here a particular case is the discrete normal. Regions of validity are being studied. 11 refs.

  8. Immigration and Prosecutorial Discretion

    PubMed Central

    Apollonio, Dorie; Lochner, Todd; Heddens, Myriah

    2015-01-01

    Immigration has become an increasingly salient national issue in the US, and the Department of Justice recently increased federal efforts to prosecute immigration offenses. This shift, however, relies on the cooperation of US attorneys and their assistants. Traditionally federal prosecutors have enjoyed enormous discretion and have been responsive to local concerns. To consider how the centralized goal of immigration enforcement may have influenced federal prosecutors in regional offices, we review their prosecution of immigration offenses in California using over a decade's worth of data. Our findings suggest that although centralizing forces influence immigration prosecutions, individual US attorneys' offices retain distinct characteristics. Local factors influence federal prosecutors' behavior in different ways depending on the office. Contrary to expectations, unemployment rates did not affect prosecutors' willingness to pursue immigration offenses, nor did local popular opinion about illegal immigration. PMID:26146530

  9. Discrete stability in stochastic programming

    SciTech Connect

    Lepp, R.

    1994-12-31

    In this lecture we study stability properties of stochastic programs with recourse where the probability measure is approximated by a sequence of weakly convergent discrete measures. Such discrete approximation approach gives us a possibility to analyze explicitly the behavior of the second stage correction function. The approach is based on modern functional analytical methods of an approximation of extremum problems in function spaces, especially on the notion of the discrete convergence of vectors to an essentially bounded measurable function.

  10. The key role of dislocation dissociation in the plastic behaviour of single crystal nickel-based superalloy with low stacking fault energy: Three-dimensional discrete dislocation dynamics modelling

    NASA Astrophysics Data System (ADS)

    Huang, Minsheng; Li, Zhenhuan

    2013-12-01

    To model the deformation of single crystal nickel based superalloys (SCNBS) with low stacking fault energy (SFE), three-dimensional discrete dislocation dynamics (3D-DDD) is extended by incorporating dislocation dissociation mechanism. The present 3D-DDD simulations show that, consistent with the existing TEM observation, the leading partial can enter the matrix channel efficiently while the trailing partial can hardly glide into it when the dislocation dissociation is taken into account. To determine whether the dislocation dissociation can occur or not, a critical percolation stress (CPS) based criterion is suggested. According to this CPS criterion, for SCNBS there exists a critical matrix channel width. When the channel width is lower than this critical value, the dislocation tends to dissociate into an extended configuration and vice versa. To clarify the influence of dislocation dissociation on CPS, the classical Orowan formula is improved by incorporating the SFE. Moreover, the present 3D-DDD simulations also show that the yielding stress of SCNBSs with low SFE may be overestimated up to 30% if the dislocation dissociation is ignored. With dislocation dissociation being considered, the size effect due to the width of γ matrix channel and the length of γ‧ precipitates on the stress-strain responses of SCNBS can be enhanced remarkably. In addition, due to the strong constraint effect by the two-phase microstructure in SCNBS, the configuration of formed junctions is quite different from that in single phase crystals such as Cu. The present results not only provide clear understanding of the two-phase microstructure levelled microplastic mechanisms in SCNBSs with low SFE, but also help to develop new continuum-levelled constitutive laws for SCNBSs.

  11. Averaging analysis for discrete time and sampled data adaptive systems

    NASA Technical Reports Server (NTRS)

    Fu, Li-Chen; Bai, Er-Wei; Sastry, Shankar S.

    1986-01-01

    Earlier continuous time averaging theorems are extended to the nonlinear discrete time case. Theorems for the study of the convergence analysis of discrete time adaptive identification and control systems are used. Instability theorems are also derived and used for the study of robust stability and instability of adaptive control schemes applied to sampled data systems. As a by product, the effects of sampling on unmodeled dynamics in continuous time systems are also studied.

  12. Webbing It.

    ERIC Educational Resources Information Center

    Brandsberg, Jennifer

    1996-01-01

    Provides a quick look at some World Wide Web sites that contain current election year information. Recommends Project Vote Smart, a site with links to online news organizations, the home pages of all presidential candidates, and other political sites. Briefly notes several interactive CD-ROM resources. (MJP)

  13. On Discrete Lotka-Volterra Type Models

    NASA Astrophysics Data System (ADS)

    Mukhamedov, Farrukh; Saburov, Mansoor

    The Lotka-Volterra (in short LV) model is a second order nonlinear differential equation frequently used to describe the dynamics of biological systems in which two groups of species, predators and their preys interact. One of the basic results of the LV model is that under suitable conditions the LV model can exhibit any asymptotical behavior such as equilibrium states, periodic cycles, and attractors. The discrete analogy of LV model has been considered by many researchers and has been called a quadratic LV model. In a discrete case, one of the unexpected results is that a quadratic LV model cannot exhibit a periodic cycle. In this paper we study nonlinear LV type models which include quadratic LV as a particular case. Unlike quadratic LV models, LV type models can exhibit any asymptotical behavior such as equilibrium states, periodic cycles, and attractors.

  14. Discrete Bubble Modeling for Cavitation Bubbles

    NASA Astrophysics Data System (ADS)

    Choi, Jin-Keun; Chahine, Georges; Hsiao, Chao-Tsung

    2007-03-01

    Dynaflow, Inc. has conducted extensive studies on non-spherical bubble dynamics and interactions with solid and free boundaries, vortical flow structures, and other bubbles. From these studies, emerged a simplified Surface Averaged Pressure (SAP) spherical bubble dynamics model and a Lagrangian bubble tracking scheme. In this SAP scheme, the pressure and velocity of the surrounding flow field are averaged on the bubble surface, and then used for the bubble motion and volume dynamics calculations. This model is implemented using the Fluent User Defined Function (UDF) as Discrete Bubble Model (DBM). The Bubble dynamics portion can be solved using an incompressible liquid modified Rayleigh-Plesset equation or a compressible liquid modified Gilmore equation. The Discrete Bubble Model is a very suitable tool for the studies on cavitation inception of foils and turbo machinery, bubble nuclei effects, noise from the bubbles, and can be used in many practical problems in industrial and naval applications associated with flows in pipes, jets, pumps, propellers, ships, and the ocean. Applications to propeller cavitation, wake signatures of waterjet propelled ships, bubble-wake interactions, modeling of cavitating jets, and bubble entrainments around a ship will be presented.

  15. Web Canary: A Virtualized Web Browser to Support Large-Scale Silent Collaboration in Detecting Malicious Web Sites

    NASA Astrophysics Data System (ADS)

    Wang, Jiang; Ghosh, Anup; Huang, Yih

    Malicious Web content poses a serious threat to the Internet, organizations and users. Current approaches to detecting malicious Web content employ high-powered honey clients to scan the Web for potentially malicious pages. These approaches, while effective at detecting malicious content, have the drawbacks of being few and far between, presenting a single snapshot in time of very dynamic phenomena, and having artificial test data. To address these problems, we developed a virtualized Web browser that uses large-scale collaboration to identify URLs that host malicious content on a continuing basis by building in an elective reporting system. The system, which we call a Web canary, runs a standard Web browser in a known, pristine OS every time the browser starts. Users not only report malicious URLs but also benefit from protection against malicious content. Experimental results show that it can detect the malicious Web pages effectively with acceptable overhead.

  16. Four-dimensional characterization of a sheet-forming web

    DOEpatents

    Sari-Sarraf, Hamed; Goddard, James S.

    2003-04-22

    A method and apparatus are provided by which a sheet-forming web may be characterized in four dimensions. Light images of the web are recorded at a point adjacent the initial stage of the web, for example, near the headbox in a paperforming operation. The images are digitized, and the resulting data is processed by novel algorithms to provide a four-dimensional measurement of the web. The measurements include two-dimensional spatial information, the intensity profile of the web, and the depth profile of the web. These measurements can be used to characterize the web, predict its properties and monitor production events, and to analyze and quantify headbox flow dynamics.

  17. Discrete Mathematics and Curriculum Reform.

    ERIC Educational Resources Information Center

    Kenney, Margaret J.

    1996-01-01

    Defines discrete mathematics as the mathematics necessary to effect reasoned decision making in finite situations and explains how its use supports the current view of mathematics education. Discrete mathematics can be used by curriculum developers to improve the curriculum for students of all ages and abilities. (SLD)

  18. Discrete Mathematics and Its Applications

    ERIC Educational Resources Information Center

    Oxley, Alan

    2010-01-01

    The article gives ideas that lecturers of undergraduate Discrete Mathematics courses can use in order to make the subject more interesting for students and encourage them to undertake further studies in the subject. It is possible to teach Discrete Mathematics with little or no reference to computing. However, students are more likely to be…

  19. Discreteness inducing coexistence

    NASA Astrophysics Data System (ADS)

    dos Santos, Renato Vieira

    2013-12-01

    Consider two species that diffuse through space. Consider further that they differ only in initial densities and, possibly, in diffusion constants. Otherwise they are identical. What happens if they compete with each other in the same environment? What is the influence of the discrete nature of the interactions on the final destination? And what are the influence of diffusion and additive fluctuations corresponding to random migration and immigration of individuals? This paper aims to answer these questions for a particular competition model that incorporates intra and interspecific competition between the species. Based on mean field theory, the model has a stationary state dependent on the initial density conditions. We investigate how this initial density dependence is affected by the presence of demographic multiplicative noise and additive noise in space and time. There are three main conclusions: (1) Additive noise favors denser populations at the expense of the less dense, ratifying the competitive exclusion principle. (2) Demographic noise, on the other hand, favors less dense populations at the expense of the denser ones, inducing equal densities at the quasi-stationary state, violating the aforementioned principle. (3) The slower species always suffers the more deleterious effects of statistical fluctuations in a homogeneous medium.

  20. Anomalous discrete symmetry

    SciTech Connect

    Huang, Z. )

    1992-12-01

    We examine an interesting scenario to solve the domain-wall problem recently suggested by Preskill, Trivedi, Wilczek, and Wise. The effective potential is calculated in the presence of the QCD axial anomaly. It is shown that some discrete symmetries such as {ital CP} and {ital Z}{sub 2} can be anomalous due to a so-called {ital K} term induced by instantons. We point out that the {ital Z}{sub 2} domain-wall problem in the two-doublet standard model can be resolved by two types of solutions: the {ital CP}-conserving one and the {ital CP}-breaking one. In the first case, there exist two {ital Z}{sub 2}-related local minima whose energy splitting is provided by the instanton effect. In the second case, there is only one unique vacuum so that the domain walls do not form at all. The consequences of this new source of {ital CP} violation are discussed and shown to be well within the experimental limits in weak interactions.

  1. Discrete subaortic stenosis.

    PubMed Central

    Khan, M M; Varma, M P; Cleland, J; O'Kane, H O; Webb, S W; Mulholland, H C; Adgey, A A

    1981-01-01

    Data concerning 17 consecutive patients with discrete subaortic stenosis are recorded. Twelve patients underwent operative resection of the obstructing lesion. Of these all except one were symptomatic and all had electrocardiographic evidence of left ventricular hypertrophy or left ventricular hypertrophy with strain. They had a peak resting systolic left ventricular outflow tract gradient of greater than 50 mmHg as predicted from the combined cuff measurement of systolic blood pressure and the echocardiographically estimated left ventricular systolic pressure and/or as determined by cardiac catheterisation. The outflow tract gradient as predicted from M-mode echocardiography and peak systolic pressure showed close correlation with that measured at cardiac catheterisation or operation. During the postoperative follow-up from one month to 11 years, of 11 patients, one patient required a further operation for recurrence of the obstruction four years after the initial operation. All patients are now asymptomatic. Five patients have not had an operation. The left ventricular outflow tract gradient as assessed at the time of cardiac catheterisation was greater than 50 mmHg. One patient has been lost to follow-up. The remaining four have been followed from four to eight years and have remained asymptomatic and the electrocardiograms have remained unchanged. Careful follow-up of all patients is essential with continuing clinical assessment, electrocardiograms, M-mode and two-dimensional echocardiograms, and if necessary cardiac catheterisation. Prophylaxis against bacterial endocarditis is also essential. Images PMID:6457617

  2. An Architecture to Enable Future Sensor Webs

    NASA Technical Reports Server (NTRS)

    Mandl, Dan; Caffrey, Robert; Frye, Stu; Grosvenor, Sandra; Hess, Melissa; Chien, Steve; Sherwood, Rob; Davies, Ashley; Hayden, Sandra; Sweet, Adam

    2004-01-01

    A sensor web is a coherent set of distributed 'nodes', interconnected by a communications fabric, that collectively behave as a single dynamic observing system. A 'plug and play' mission architecture enables progressive mission autonomy and rapid assembly and thereby enables sensor webs. This viewgraph presentation addresses: Target mission messaging architecture; Strategy to establish architecture; Progressive autonomy with onboard sensor web; EO-1; Adaptive array antennas (smart antennas) for satellite ground stations.

  3. Smooth halos in the cosmic web

    NASA Astrophysics Data System (ADS)

    Gaite, José

    2015-04-01

    Dark matter halos can be defined as smooth distributions of dark matter placed in a non-smooth cosmic web structure. This definition of halos demands a precise definition of smoothness and a characterization of the manner in which the transition from smooth halos to the cosmic web takes place. We introduce entropic measures of smoothness, related to measures of inequality previously used in economy and with the advantage of being connected with standard methods of multifractal analysis already used for characterizing the cosmic web structure in cold dark matter N-body simulations. These entropic measures provide us with a quantitative description of the transition from the small scales portrayed as a distribution of halos to the larger scales portrayed as a cosmic web and, therefore, allow us to assign definite sizes to halos. However, these ``smoothness sizes'' have no direct relation to the virial radii. Finally, we discuss the influence of N-body discreteness parameters on smoothness.

  4. On discrete control of nonlinear systems with applications to robotics

    NASA Technical Reports Server (NTRS)

    Eslami, Mansour

    1989-01-01

    Much progress has been reported in the areas of modeling and control of nonlinear dynamic systems in a continuous-time framework. From implementation point of view, however, it is essential to study these nonlinear systems directly in a discrete setting that is amenable for interfacing with digital computers. But to develop discrete models and discrete controllers for a nonlinear system such as robot is a nontrivial task. Robot is also inherently a variable-inertia dynamic system involving additional complications. Not only the computer-oriented models of these systems must satisfy the usual requirements for such models, but these must also be compatible with the inherent capabilities of computers and must preserve the fundamental physical characteristics of continuous-time systems such as the conservation of energy and/or momentum. Preliminary issues regarding discrete systems in general and discrete models of a typical industrial robot that is developed with full consideration of the principle of conservation of energy are presented. Some research on the pertinent tactile information processing is reviewed. Finally, system control methods and how to integrate these issues in order to complete the task of discrete control of a robot manipulator are also reviewed.

  5. Long-lived discrete breathers in free-standing graphene

    NASA Astrophysics Data System (ADS)

    Fraile, Alberto; Koukaras, Emmanuel N.; Papagelis, Konstantinos; Lazarides, Nikos; Tsironis, G. P.

    2016-06-01

    Intrinsic localized modes or discrete breathers are investigated by molecular dynamics simulations in free-standing graphene. Discrete breathers are generated either through thermal quenching of the graphene lattice or by proper initialization, with frequencies and lifetimes sensitively depending on the interatomic potential describing the carbon-carbon interaction. In the most realistic scenario, for which temperature-dependent molecular dynamics simulations in three dimension using a graphene-specific interatomic potential are performed, the breather lifetimes increase to hundreds of picoseconds even at relatively high temperatures. These lifetimes are much higher than those anticipated from earlier calculations, and may enable direct breather observation in Raman spectroscopy experiments.

  6. Web-Assisted and Online Learning.

    ERIC Educational Resources Information Center

    McEwen, Beryl C.

    2001-01-01

    Argues that distance learning technologies are tools. Offers the author's experiences of teaching web-assisted as well as online courses as examples of different approaches to distance learning, each with totally different dynamics. Concludes that meaningful learning took place in both classes, whether web-assisted traditional instruction or…

  7. Distinguishing between discreteness effects in stochastic reaction processes.

    PubMed

    Haruna, Taichi

    2015-05-01

    The effect of discreteness on stochastic dynamics of chemically reacting systems is studied analytically. We apply the scheme bridging the chemical master equation and the chemical Fokker-Planck equation by a parameter representing the degree of discreteness previously proposed by the author for two concrete systems. One is an autocatalytic reaction system, and the other is a branching-annihilation reaction system. It is revealed that the change in characteristic time scales when discreteness is decreased is yielded between the two systems for different reasons. In the former system, it originates from the boundaries where one of the chemical species is zero, whereas in the latter system, it is due to modification of the most probable extinction path caused by discreteness loss. PMID:26066219

  8. Energy Exchange Between the Discrete Breathers in Graphane

    NASA Astrophysics Data System (ADS)

    Baimova, J. A.; Dmitriev, S. V.

    2015-10-01

    Discrete breathers in graphane (fully hydrogenated graphene) are studied by the molecular dynamics method. It has previously been demonstrated that in graphane, there are discrete breathers in the form of single hydrogen atoms oscillating with the big amplitude in the direction perpendicular to the graphane plane with a frequency lying in the bandgap of the phonon spectrum. In this work, the possibility of the existence of longlived clusters of discrete breathers of different configurations is shown, their properties are studied, and the possibility of energy exchange between the discrete breathers in the cluster is demonstrated. These results are important for the discussion of physical processes occurring during dehydrogenation of graphane at high temperatures, which, in turn, is of great importance for the development of the hydrogen storage and transport devices based on sp2-carbon materials.

  9. The discrete variational derivative method based on discrete differential forms

    NASA Astrophysics Data System (ADS)

    Yaguchi, Takaharu; Matsuo, Takayasu; Sugihara, Masaaki

    2012-05-01

    As is well known, for PDEs that enjoy a conservation or dissipation property, numerical schemes that inherit this property are often advantageous in that the schemes are fairly stable and give qualitatively better numerical solutions in practice. Lately, Furihata and Matsuo have developed the so-called “discrete variational derivative method” that automatically constructs energy preserving or dissipative finite difference schemes. Although this method was originally developed on uniform meshes, the use of non-uniform meshes is of importance for multi-dimensional problems. On the other hand, the theories of discrete differential forms have received much attention recently. These theories provide a discrete analogue of the vector calculus on general meshes. In this paper, we show that the discrete variational derivative method and the discrete differential forms by Bochev and Hyman can be combined. Applications to the Cahn-Hilliard equation and the Klein-Gordon equation on triangular meshes are provided as demonstrations. We also show that the schemes for these equations are H1-stable under some assumptions. In particular, one for the nonlinear Klein-Gordon equation is obtained by combination of the energy conservation property and the discrete Poincaré inequality, which are the temporal and spacial structures that are preserved by the above methods.

  10. Accelerator Physics Code Web Repository

    SciTech Connect

    Zimmermann, F.; Basset, R.; Bellodi, G.; Benedetto, E.; Dorda, U.; Giovannozzi, M.; Papaphilippou, Y.; Pieloni, T.; Ruggiero, F.; Rumolo, G.; Schmidt, F.; Todesco, E.; Zotter, B.W.; Payet, J.; Bartolini, R.; Farvacque, L.; Sen, T.; Chin, Y.H.; Ohmi, K.; Oide, K.; Furman, M.; /LBL, Berkeley /Oak Ridge /Pohang Accelerator Lab. /SLAC /TRIUMF /Tech-X, Boulder /UC, San Diego /Darmstadt, GSI /Rutherford /Brookhaven

    2006-10-24

    In the framework of the CARE HHH European Network, we have developed a web-based dynamic accelerator-physics code repository. We describe the design, structure and contents of this repository, illustrate its usage, and discuss our future plans, with emphasis on code benchmarking.

  11. ACCELERATION PHYSICS CODE WEB REPOSITORY.

    SciTech Connect

    WEI, J.

    2006-06-26

    In the framework of the CARE HHH European Network, we have developed a web-based dynamic accelerator-physics code repository. We describe the design, structure and contents of this repository, illustrate its usage, and discuss our future plans, with emphasis on code benchmarking.

  12. Exact discretization by Fourier transforms

    NASA Astrophysics Data System (ADS)

    Tarasov, Vasily E.

    2016-08-01

    A discretization of differential and integral operators of integer and non-integer orders is suggested. New type of differences, which are represented by infinite series, is proposed. A characteristic feature of the suggested differences is an implementation of the same algebraic properties that have the operator of differentiation (property of algebraic correspondence). Therefore the suggested differences are considered as an exact discretization of derivatives. These differences have a property of universality, which means that these operators do not depend on the form of differential equations and the parameters of these equations. The suggested differences operators allows us to have difference equations whose solutions are equal to the solutions of corresponding differential equations. The exact discretization of the derivatives of integer orders is given by the suggested differences of the same integer orders. Similarly, the exact discretization of the Riesz derivatives and integrals of integer and non-integer order is given by the proposed fractional differences of the same order.

  13. Novel approach to data discretization

    NASA Astrophysics Data System (ADS)

    Borowik, Grzegorz; Kowalski, Karol; Jankowski, Cezary

    2015-09-01

    Discretization is an important preprocessing step in data mining. The data discretization method involves determining the ranges of values for numeric attributes, which ultimately represent discrete intervals for new attributes. The ranges for the proposed set of cuts are analyzed, in order to obtain a minimal set of ranges while retaining the possibility of classification. For this purpose, a special discernibility function can be constructed as a conjunction of alternative cuts set for each pair of different objects of different decisions- cuts discern these objects. However, the data mining methods based on discernibility matrix are insufficient for large databases. The purpose of this paper is the idea of implementation of a new data discretization algorithm that is based on statistics of attribute values and that avoids building the discernibility matrix explicitly. Evaluation of time complexity has shown that the proposed method is much more efficient than currently available solutions for large data sets.

  14. Deep Web video

    SciTech Connect

    None Available

    2009-06-01

    To make the web work better for science, OSTI has developed state-of-the-art technologies and services including a deep web search capability. The deep web includes content in searchable databases available to web users but not accessible by popular search engines, such as Google. This video provides an introduction to the deep web search engine.

  15. Deep Web video

    ScienceCinema

    None Available

    2012-03-28

    To make the web work better for science, OSTI has developed state-of-the-art technologies and services including a deep web search capability. The deep web includes content in searchable databases available to web users but not accessible by popular search engines, such as Google. This video provides an introduction to the deep web search engine.

  16. Using Database-Driven Web Pages for Your Courses.

    ERIC Educational Resources Information Center

    Sullivan, Peter

    1999-01-01

    Describes database-driven Web pages that dynamically display different information each time the page is accessed in response to the user's needs. Highlights include information management; online assignments; grade tracking; updating Web pages; creating database-driven Web pages; and examples of how they have been used for a high school physics…

  17. Stability analysis of the Euler discretization for SIR epidemic model

    SciTech Connect

    Suryanto, Agus

    2014-06-19

    In this paper we consider a discrete SIR epidemic model obtained by the Euler method. For that discrete model, existence of disease free equilibrium and endemic equilibrium is established. Sufficient conditions on the local asymptotical stability of both disease free equilibrium and endemic equilibrium are also derived. It is found that the local asymptotical stability of the existing equilibrium is achieved only for a small time step size h. If h is further increased and passes the critical value, then both equilibriums will lose their stability. Our numerical simulations show that a complex dynamical behavior such as bifurcation or chaos phenomenon will appear for relatively large h. Both analytical and numerical results show that the discrete SIR model has a richer dynamical behavior than its continuous counterpart.

  18. Are nonlinear discrete cellular automata compatible with quantum mechanics?

    NASA Astrophysics Data System (ADS)

    Elze, Hans-Thomas

    2015-07-01

    We consider discrete and integer-valued cellular automata (CA). A particular class of which comprises “Hamiltonian CA” with equations of motion that bear similarities to Hamilton's equations, while they present discrete updating rules. The dynamics is linear, quite similar to unitary evolution described by the Schrödinger equation. This has been essential in our construction of an invertible map between such CA and continuous quantum mechanical models, which incorporate a fundamental discreteness scale. Based on Shannon's sampling theory, it leads, for example, to a one-to-one relation between quantum mechanical and CA conservation laws. The important issue of linearity of the theory is examined here by incorporating higher-order nonlinearities into the underlying action. These produce inconsistent nonlocal (in time) effects when trying to describe continuously such nonlinear CA. Therefore, in the present framework, only linear CA and local quantum mechanical dynamics are compatible.

  19. Flow Webs: Mechanism and Architecture for the Implementation of Sensor Webs

    NASA Astrophysics Data System (ADS)

    Gorlick, M. M.; Peng, G. S.; Gasster, S. D.; McAtee, M. D.

    2006-12-01

    The sensor web is a distributed, federated infrastructure much like its predecessors, the internet and the world wide web. It will be a federation of many sensor webs, large and small, under many distinct spans of control, that loosely cooperates and share information for many purposes. Realistically, it will grow piecemeal as distinct, individual systems are developed and deployed, some expressly built for a sensor web while many others were created for other purposes. Therefore, the architecture of the sensor web is of fundamental import and architectural strictures that inhibit innovation, experimentation, sharing or scaling may prove fatal. Drawing upon the architectural lessons of the world wide web, we offer a novel system architecture, the flow web, that elevates flows, sequences of messages over a domain of interest and constrained in both time and space, to a position of primacy as a dynamic, real-time, medium of information exchange for computational services. The flow web captures; in a single, uniform architectural style; the conflicting demands of the sensor web including dynamic adaptations to changing conditions, ease of experimentation, rapid recovery from the failures of sensors and models, automated command and control, incremental development and deployment, and integration at multiple levels—in many cases, at different times. Our conception of sensor webs—dynamic amalgamations of sensor webs each constructed within a flow web infrastructure—holds substantial promise for earth science missions in general, and of weather, air quality, and disaster management in particular. Flow webs, are by philosophy, design and implementation a dynamic infrastructure that permits massive adaptation in real-time. Flows may be attached to and detached from services at will, even while information is in transit through the flow. This concept, flow mobility, permits dynamic integration of earth science products and modeling resources in response to real

  20. Discovery and Classification of Bioinformatics Web Services

    SciTech Connect

    Rocco, D; Critchlow, T

    2002-09-02

    The transition of the World Wide Web from a paradigm of static Web pages to one of dynamic Web services provides new and exciting opportunities for bioinformatics with respect to data dissemination, transformation, and integration. However, the rapid growth of bioinformatics services, coupled with non-standardized interfaces, diminish the potential that these Web services offer. To face this challenge, we examine the notion of a Web service class that defines the functionality provided by a collection of interfaces. These descriptions are an integral part of a larger framework that can be used to discover, classify, and wrapWeb services automatically. We discuss how this framework can be used in the context of the proliferation of sites offering BLAST sequence alignment services for specialized data sets.

  1. Cyber agent on the World Wide Web

    NASA Astrophysics Data System (ADS)

    Lee, H. C.; Dagli, Cihan H.

    1996-03-01

    The World Wide Web has brought the information from a distributed environment into a global information universe. As users keep on surfing the Web and adding their bookmarks, it is increasingly difficult for them to find their desired information even though there are many search tools available. In this paper, a smart engineering system called Cyber Agent is proposed to help users search and organize the information. It contains two major subsystems, namely, WebTracer and WebOrganizer. They adapt their behavior dynamically according to the environment and the special preferences of each individual. WebTracer is the wavefront of the Cyber Agent while WebOrganizer is the brain of the Cyber Agent.

  2. Pattern Formation in Spatially Discrete Systems

    NASA Astrophysics Data System (ADS)

    Méndez, Vicenç; Fedotov, Sergei; Horsthemke, Werner

    The preceding chapters have dealt with the spatiotemporal behavior of spatially continuous systems. We now turn our attention to the dynamical behavior and stability properties of spatially discrete systems. A wide variety of phenomena in chemistry, biology, physics, and other fields involve the coupling between nonlinear, discrete units. Examples include arrays of Josephson junctions, chains of coupled diode resonators, coupled chemical or biochemical reactors, myelinated nerve fibers, neuronal networks, and patchy ecosystems. Such networks of coupled nonlinear units often combine dynamical and structural complexity [422]. Cells in living tissues, for example, are arranged in a variety of geometries. One-dimensional rings of cells were already considered by Turing [440]. Other types of lattices, such as open-ended linear arrays, tubes, rectangular and hexagonal arrays, and irregular arrangements in two or three dimensions are also found, see for example [5]. Cells interact with adjacent cells in various distinct ways. For example, signaling between cells may occur via diffusion through gap junctions [352, 230] or by membrane-bound proteins, juxtacrine signaling [339, 340, 471].

  3. Where are the parasites in food webs?

    PubMed Central

    2012-01-01

    This review explores some of the reasons why food webs seem to contain relatively few parasite species when compared to the full diversity of free living species in the system. At present, there are few coherent food web theories to guide scientific studies on parasites, and this review posits that the methods, directions and questions in the field of food web ecology are not always congruent with parasitological inquiry. For example, topological analysis (the primary tool in food web studies) focuses on only one of six important steps in trematode life cycles, each of which requires a stable community dynamic to evolve. In addition, these transmission strategies may also utilize pathways within the food web that are not considered in traditional food web investigations. It is asserted that more effort must be focused on parasite-centric models, and a central theme is that many different approaches will be required. One promising approach is the old energetic perspective, which considers energy as the critical resource for all organisms, and the currency of all food web interactions. From the parasitological point of view, energy can be used to characterize the roles of parasites at all levels in the food web, from individuals to populations to community. The literature on parasite energetics in food webs is very sparse, but the evidence suggests that parasite species richness is low in food webs because parasites are limited by the quantity of energy available to their unique lifestyles. PMID:23092160

  4. Web Mining for Web Image Retrieval.

    ERIC Educational Resources Information Center

    Chen, Zheng; Wenyin, Liu; Zhang, Feng; Li, Mingjing; Zhang, Hongjiang

    2001-01-01

    Presents a prototype system for image retrieval from the Internet using Web mining. Discusses the architecture of the Web image retrieval prototype; document space modeling; user log mining; and image retrieval experiments to evaluate the proposed system. (AEF)

  5. Free vibration of hexagonal panels supported at discrete points

    NASA Technical Reports Server (NTRS)

    Wu, K. Chauncey

    1991-01-01

    An analytical study to determine the structural dynamic behavior of a hexagonal panel with discrete simple supports is presented. These panels are representative of the facets of a precision reflector surface. The effects of both support point location and panel curvature on the lowest natural frequency of the panel are quantified and discussed.

  6. Discrete Newtonian cosmology

    NASA Astrophysics Data System (ADS)

    Ellis, George F. R.; Gibbons, Gary W.

    2014-01-01

    In this paper we lay down the foundations for a purely Newtonian theory of cosmology, valid at scales small compared with the Hubble radius, using only Newtonian point particles acted on by gravity and a possible cosmological term. We describe the cosmological background which is given by an exact solution of the equations of motion in which the particles expand homothetically with their comoving positions constituting a central configuration. We point out, using previous work, that an important class of central configurations are homogeneous and isotropic, thus justifying the usual assumptions of elementary treatments. The scale factor is shown to satisfy the standard Raychaudhuri and Friedmann equations without making any fluid dynamic or continuum approximations. Since we make no commitment as to the identity of the point particles, our results are valid for cold dark matter, galaxies, or clusters of galaxies. In future publications we plan to discuss perturbations of our cosmological background from the point particle viewpoint laid down in this paper and show consistency with much standard theory usually obtained by more complicated and conceptually less clear continuum methods. Apart from its potential use in large scale structure studies, we believe that our approach has great pedagogic advantages over existing elementary treatments of the expanding universe, since it requires no use of general relativity or continuum mechanics but concentrates on the basic physics: Newton’s laws for gravitationally interacting particles.

  7. Distributed Relaxation for Conservative Discretizations

    NASA Technical Reports Server (NTRS)

    Diskin, Boris; Thomas, James L.

    2001-01-01

    A multigrid method is defined as having textbook multigrid efficiency (TME) if the solutions to the governing system of equations are attained in a computational work that is a small (less than 10) multiple of the operation count in one target-grid residual evaluation. The way to achieve this efficiency is the distributed relaxation approach. TME solvers employing distributed relaxation have already been demonstrated for nonconservative formulations of high-Reynolds-number viscous incompressible and subsonic compressible flow regimes. The purpose of this paper is to provide foundations for applications of distributed relaxation to conservative discretizations. A direct correspondence between the primitive variable interpolations for calculating fluxes in conservative finite-volume discretizations and stencils of the discretized derivatives in the nonconservative formulation has been established. Based on this correspondence, one can arrive at a conservative discretization which is very efficiently solved with a nonconservative relaxation scheme and this is demonstrated for conservative discretization of the quasi one-dimensional Euler equations. Formulations for both staggered and collocated grid arrangements are considered and extensions of the general procedure to multiple dimensions are discussed.

  8. C, N and P stoichiometric mismatch between resources and consumers influence the dynamics of a marine microbial food web model and its response to atmospheric N and P inputs

    NASA Astrophysics Data System (ADS)

    Pondaven, P.; Pivière, P.; Ridame, C.; Guien, C.

    2014-02-01

    Results from the DUNE experiments reported in this issue have shown that nutrient input from dust deposition in large mesocosms deployed in the western Mediterranean induced a response of the microbial food web, with an increase of primary production rates (PP), bacterial respiration rates (BR), as well as autotrophic and heterotrophic biomasses. Additionally, it was found that nutrient inputs strengthened the net heterotrophy of the system, with NPP : BR ratios < 1. In this study we used a simple microbial food web model, inspired from previous modelling studies, to explore how C, N and P stoichiometric mismatch between producers and consumers along the food chain can influence the dynamics and the trophic status of the ecosystem. Attention was paid to the mechanisms involved in the balance between net autotrophy vs. net heterotrophy. Although the model was kept simple, predicted changes in biomass and PP were qualitatively consistent with observations from DUNE experiments. Additionally, the model shed light on how ecological stoichiometric mismatch between producers and consumers can control food web dynamics and drive the system toward net heterotrophy. In the model, net heterotrophy was notably driven by the parameterisation of the production and excretion of extra DOC from phytoplankton under nutrient-limited conditions. This mechanism yielded to high C : P and C : N ratios of the DOM pool, and subsequent postabsorptive respiration of C by bacteria. The model also predicted that nutrient inputs from dust strengthened the net heterotrophy of the system; a pattern also observed during two of the three DUNE experiments (P and Q). However, the model was not able to account for the low NPP : BR ratios (down to 0.1) recorded during the DUNE experiments. Possible mechanisms involved in this discrepancy were discussed.

  9. Web Mining: Machine Learning for Web Applications.

    ERIC Educational Resources Information Center

    Chen, Hsinchun; Chau, Michael

    2004-01-01

    Presents an overview of machine learning research and reviews methods used for evaluating machine learning systems. Ways that machine-learning algorithms were used in traditional information retrieval systems in the "pre-Web" era are described, and the field of Web mining and how machine learning has been used in different Web mining applications…

  10. Discretion or discretions? Delineating professional discretion: the case of English medical practice.

    PubMed

    Cheraghi-Sohi, Sudeh; Calnan, Michael

    2013-11-01

    There has much debate about the extent to which professional discretion has been challenged by recent organisational changes such as through the new forms of governance associated with the introduction of the principles of the New Public Management (NPM) into health systems and other public sector services. What appears to be missing from these debates is a detailed analysis of the concept of professional discretion itself. This paper attempts to fill this gap by delineating the key concepts of professional discretion evident in the literature and exploring their significance in an empirical study of the influence of the 2004 new general medical services contract (nGMS) and the introduction of the Quality and Outcomes Framework (QOF), a prescriptive pay-for-performance system designed to standardise the quality of care provision in general medical practice in the United Kingdom. The study adopted a longitudinal design using semi-structured interviews with general practitioners (GPs, N = 62) working in the English National Health Service (NHS) between 2007 and 2009. A multi-dimensional conception of discretion was used to explore how GP discretion might have been influenced by contractual changes and in particular, QOF. The findings suggest that through a complex interplay of factors, a post-QOF reduction in GP discretion was identifiable, highlighting different potential sources of constraint such as in the social, organisational and economic dimensions of discretion. The evidence also suggested the emergence of a new form of organisational medical professionalism within general practice characterised by standardisation, bureaucracy and performance management. PMID:24034951

  11. Geometry of discrete quantum computing

    NASA Astrophysics Data System (ADS)

    Hanson, Andrew J.; Ortiz, Gerardo; Sabry, Amr; Tai, Yu-Tsung

    2013-05-01

    Conventional quantum computing entails a geometry based on the description of an n-qubit state using 2n infinite precision complex numbers denoting a vector in a Hilbert space. Such numbers are in general uncomputable using any real-world resources, and, if we have the idea of physical law as some kind of computational algorithm of the universe, we would be compelled to alter our descriptions of physics to be consistent with computable numbers. Our purpose here is to examine the geometric implications of using finite fields Fp and finite complexified fields \\mathbf {F}_{p^2} (based on primes p congruent to 3 (mod4)) as the basis for computations in a theory of discrete quantum computing, which would therefore become a computable theory. Because the states of a discrete n-qubit system are in principle enumerable, we are able to determine the proportions of entangled and unentangled states. In particular, we extend the Hopf fibration that defines the irreducible state space of conventional continuous n-qubit theories (which is the complex projective space \\mathbf {CP}^{2^{n}-1}) to an analogous discrete geometry in which the Hopf circle for any n is found to be a discrete set of p + 1 points. The tally of unit-length n-qubit states is given, and reduced via the generalized Hopf fibration to \\mathbf {DCP}^{2^{n}-1}, the discrete analogue of the complex projective space, which has p^{2^{n}-1} (p-1)\\,\\prod _{k=1}^{n-1} ( p^{2^{k}}+1) irreducible states. Using a measure of entanglement, the purity, we explore the entanglement features of discrete quantum states and find that the n-qubit states based on the complexified field \\mathbf {F}_{p^2} have pn(p - 1)n unentangled states (the product of the tally for a single qubit) with purity 1, and they have pn + 1(p - 1)(p + 1)n - 1 maximally entangled states with purity zero.

  12. Isotopic evidence for anthropogenic impacts on aquatic food web dynamics and mercury cycling in a subtropical wetland ecosystem in the US.

    PubMed

    Wang, Yang; Gu, Binhe; Lee, Ming-Kuo; Jiang, Shijun; Xu, Yingfeng

    2014-07-15

    Quantifying and predicting the food web consequences of anthropogenic changes is difficult using traditional methods (based on gut content analysis) because natural food webs are variable and complex. Here, stable and radioactive carbon isotopes are used, in conjunction with nitrogen isotopes and mercury (Hg) concentration data, to document the effects of land-use change on food webs and Hg bioaccumulation in the Everglades - a subtropical wetland ecosystem in the US. Isotopic signatures of largemouth bass and sunfish in reference (relatively pristine) wetlands indicate reliance on the food supply of modern primary production within the wetland. In contrast, both fish in areas impacted by agricultural runoff had radiocarbon ages as old as 540 years B.P., and larger isotopic variability than counterparts in reference wetlands, reflecting differences in the food web between impacted and reference wetlands. Consistent with this difference, particulate and dissolved organic matter in impacted areas had old radiocarbon ages (>600 years B.P.), indicating that old carbon derived from historic peat deposits in the Everglades Agricultural Area was passed along the food chain to consumers. Significant radiocarbon deficiencies in largemouth bass and sunfish, relative to mosquitofish, in impacted areas most likely indicate a reduced dependence on small fish. Furthermore, largemouth bass and sunfish from impacted areas had much lower Hg contents than those from reference wetlands. Taken together, these data suggest a shift toward lower trophic levels and a possible reduction in mercury methylation in impacted wetlands. Our study provides clear evidence that hydrological modification and land-use change in the Everglades have changed the system from one driven primarily by in-situ productivity to one that is partially dependent on allochthonous carbon input from peat soils in the agricultural area and altered the Hg biogeochemical cycle in the wetlands. The results have

  13. MendelWeb: An Electronic Science/Math/History Resource for the WWW.

    ERIC Educational Resources Information Center

    Blumberg, Roger B.

    This paper describes a hypermedia resource, called MendelWeb that integrates elementary biology, discrete mathematics, and the history of science. MendelWeb is constructed from Gregor Menders 1865 paper, "Experiments in Plant Hybridization". An English translation of Mendel's paper, which is considered to mark the birth of classical and…

  14. Discrete Lange-Newell criterion for dissipative systems.

    PubMed

    Ndzana, Fabien I I; Mohamadou, Alidou; Kofané, Timoleon Crépin

    2009-05-01

    We report on the derivation of the discrete complex Ginzburg-Landau equation with first- and second-neighbor couplings using a nonlinear electrical network. Furthermore, we discuss theoretically and numerically modulational instability of plane carrier waves launched through the line. It is pointed out that the underlying analysis not only spells out the discrete Lange-Newell criterion by the means of the linear stability analysis at which the modulational instability occurs for the generation of a train of ultrashort pulses, but also characterizes the long-time dynamical behavior of the system when the instability grows. PMID:19518586

  15. A note on a Discrete Boltzmann Equation with multiple collisions

    NASA Astrophysics Data System (ADS)

    Oliveira, Filipe; Soares, Ana Jacinta

    2008-05-01

    We compute a non-trivial explicit solution for the one-dimensional plane 6-velocity discrete Boltzmann model with multiple collisions introduced in [E. Longo, R. Monaco, On the discrete kinetic theory with multiple collisions: Plane six-velocity and unsteady Couette flow, in: Muntz, et al. (Eds.), The Proceedings of Rarefied Gas Dynamics, in: AIAA Publ., vol. 118, 1989, pp. 118-130] which asymptotically connects two particular equilibrium states. We prove that such a solution exists provided that a suitable condition on the differential elastic cross sections holds.

  16. A survey of algebraic actions of the discrete Heisenberg group

    NASA Astrophysics Data System (ADS)

    Lind, D.; Schmidt, K.

    2015-08-01

    The study of actions of countable groups by automorphisms of compact Abelian groups has recently undergone intensive development, revealing deep connections with operator algebras and other areas. The discrete Heisenberg group is the simplest non-commutative example, where dynamical phenomena related to its non-commutativity already illustrate many of these connections. The explicit structure of this group means that these phenomena have concrete descriptions, which are not only instances of the general theory but are also testing grounds for further work. This paper surveys what is known about such actions of the discrete Heisenberg group, providing numerous examples and emphasizing many of the open problems that remain. Bibliography: 71 titles.

  17. An averaging analysis of discrete-time indirect adaptive control

    NASA Technical Reports Server (NTRS)

    Phillips, Stephen M.; Kosut, Robert L.; Franklin, Gene F.

    1988-01-01

    An averaging analysis of indirect, discrete-time, adaptive control systems is presented. The analysis results in a signal-dependent stability condition and accounts for unmodeled plant dynamics as well as exogenous disturbances. This analysis is applied to two discrete-time adaptive algorithms: an unnormalized gradient algorithm and a recursive least-squares (RLS) algorithm with resetting. Since linearization and averaging are used for the gradient analysis, a local stability result valid for small adaptation gains is found. For RLS with resetting, the assumption is that there is a long time between resets. The results for the two algorithms are virtually identical, emphasizing their similarities in adaptive control.

  18. Are You Web Literate?

    ERIC Educational Resources Information Center

    Darrow, Rob

    1999-01-01

    Defines Web literacy, a subset of information literacy, as the ability to access, search, utilize, communicate, and create information on the World Wide Web. Offers 10 stages toward Web literacy, including using hyperlinks and bookmarks, an information resource for research, creating classroom lessons, guiding student use, and creating Web pages.…

  19. Untangling Your Web.

    ERIC Educational Resources Information Center

    Coombs, Norman

    2000-01-01

    Provides an overview of universal Web design and discusses guidelines developed by the Web access initiative (WAI) that focus on the access needs of Web users with disabilities. Highlights include barriers for people with print disabilities or motor impairments; the role of libraries; and resources to assist Web designers. (LRW)

  20. Lessons Learned from a Collaborative Sensor Web Prototype

    NASA Technical Reports Server (NTRS)

    Ames, Troy; Case, Lynne; Krahe, Chris; Hess, Melissa; Hennessy, Joseph F. (Technical Monitor)

    2002-01-01

    This paper describes the Sensor Web Application Prototype (SWAP) system that was developed for the Earth Science Technology Office (ESTO). The SWAP is aimed at providing an initial engineering proof-of-concept prototype highlighting sensor collaboration, dynamic cause-effect relationship between sensors, dynamic reconfiguration, and remote monitoring of sensor webs.

  1. Web data mining

    NASA Astrophysics Data System (ADS)

    Wibonele, Kasanda J.; Zhang, Yanqing

    2002-03-01

    A web data mining system using granular computing and ASP programming is proposed. This is a web based application, which allows web users to submit survey data for many different companies. This survey is a collection of questions that will help these companies develop and improve their business and customer service with their clients by analyzing survey data. This web application allows users to submit data anywhere. All the survey data is collected into a database for further analysis. An administrator of this web application can login to the system and view all the data submitted. This web application resides on a web server, and the database resides on the MS SQL server.

  2. Reduced discretization error in HZETRN

    SciTech Connect

    Slaba, Tony C.; Blattnig, Steve R.; Tweed, John

    2013-02-01

    The deterministic particle transport code HZETRN is an efficient analysis tool for studying the effects of space radiation on humans, electronics, and shielding materials. In a previous work, numerical methods in the code were reviewed, and new methods were developed that further improved efficiency and reduced overall discretization error. It was also shown that the remaining discretization error could be attributed to low energy light ions (A < 4) with residual ranges smaller than the physical step-size taken by the code. Accurately resolving the spectrum of low energy light particles is important in assessing risk associated with astronaut radiation exposure. In this work, modifications to the light particle transport formalism are presented that accurately resolve the spectrum of low energy light ion target fragments. The modified formalism is shown to significantly reduce overall discretization error and allows a physical approximation to be removed. For typical step-sizes and energy grids used in HZETRN, discretization errors for the revised light particle transport algorithms are shown to be less than 4% for aluminum and water shielding thicknesses as large as 100 g/cm{sup 2} exposed to both solar particle event and galactic cosmic ray environments.

  3. Some discrete multiple orthogonal polynomials

    NASA Astrophysics Data System (ADS)

    Arvesú, J.; Coussement, J.; van Assche, W.

    2003-04-01

    In this paper, we extend the theory of discrete orthogonal polynomials (on a linear lattice) to polynomials satisfying orthogonality conditions with respect to r positive discrete measures. First we recall the known results of the classical orthogonal polynomials of Charlier, Meixner, Kravchuk and Hahn (T.S. Chihara, An Introduction to Orthogonal Polynomials, Gordon and Breach, New York, 1978; R. Koekoek and R.F. Swarttouw, Reports of the Faculty of Technical Mathematics and Informatics No. 98-17, Delft, 1998; A.F. Nikiforov et al., Classical Orthogonal Polynomials of a Discrete Variable, Springer, Berlin, 1991). These polynomials have a lowering and raising operator, which give rise to a Rodrigues formula, a second order difference equation, and an explicit expression from which the coefficients of the three-term recurrence relation can be obtained. Then we consider r positive discrete measures and define two types of multiple orthogonal polynomials. The continuous case (Jacobi, Laguerre, Hermite, etc.) was studied by Van Assche and Coussement (J. Comput. Appl. Math. 127 (2001) 317-347) and Aptekarev et al. (Multiple orthogonal polynomials for classical weights, manuscript). The families of multiple orthogonal polynomials (of type II) that we will study have a raising operator and hence a Rodrigues formula. This will give us an explicit formula for the polynomials. Finally, there also exists a recurrence relation of order r+1 for these multiple orthogonal polynomials of type II. We compute the coefficients of the recurrence relation explicitly when r=2.

  4. Discrete implementations of scale transform

    NASA Astrophysics Data System (ADS)

    Djurdjanovic, Dragan; Williams, William J.; Koh, Christopher K.

    1999-11-01

    Scale as a physical quantity is a recently developed concept. The scale transform can be viewed as a special case of the more general Mellin transform and its mathematical properties are very applicable in the analysis and interpretation of the signals subject to scale changes. A number of single-dimensional applications of scale concept have been made in speech analysis, processing of biological signals, machine vibration analysis and other areas. Recently, the scale transform was also applied in multi-dimensional signal processing and used for image filtering and denoising. Discrete implementation of the scale transform can be carried out using logarithmic sampling and the well-known fast Fourier transform. Nevertheless, in the case of the uniformly sampled signals, this implementation involves resampling. An algorithm not involving resampling of the uniformly sampled signals has been derived too. In this paper, a modification of the later algorithm for discrete implementation of the direct scale transform is presented. In addition, similar concept was used to improve a recently introduced discrete implementation of the inverse scale transform. Estimation of the absolute discretization errors showed that the modified algorithms have a desirable property of yielding a smaller region of possible error magnitudes. Experimental results are obtained using artificial signals as well as signals evoked from the temporomandibular joint. In addition, discrete implementations for the separable two-dimensional direct and inverse scale transforms are derived. Experiments with image restoration and scaling through two-dimensional scale domain using the novel implementation of the separable two-dimensional scale transform pair are presented.

  5. Dissipative discrete breathers: periodic, quasiperiodic, chaotic, and mobile.

    PubMed

    Martínez, P J; Meister, M; Floría, L M; Falo, F

    2003-06-01

    The properties of discrete breathers in dissipative one-dimensional lattices of nonlinear oscillators subject to periodic driving forces are reviewed. We focus on oscillobreathers in the Frenkel-Kontorova chain and rotobreathers in a ladder of Josephson junctions. Both types of exponentially localized solutions are easily obtained numerically using adiabatic continuation from the anticontinuous limit. Linear stability (Floquet) analysis allows the characterization of different types of bifurcations experienced by periodic discrete breathers. Some of these bifurcations produce nonperiodic localized solutions, namely, quasiperiodic and chaotic discrete breathers, which are generally impossible as exact solutions in Hamiltonian systems. Within a certain range of parameters, propagating breathers occur as attractors of the dissipative dynamics. General features of these excitations are discussed and the Peierls-Nabarro barrier is addressed. Numerical scattering experiments with mobile breathers reveal the existence of two-breather bound states and allow a first glimpse at the intricate phenomenology of these special multibreather configurations. PMID:12777126

  6. A New Web-based Application Optimization Model in Multicore Web Server

    NASA Astrophysics Data System (ADS)

    You, Guohua; Zhao, Ying

    More and more web servers adopt multi-core CPUs to improve performance because of the development of multi-core technology. However, web applications couldn't exploit the potential of multi-core web server efficiently because of traditional processing algorithm of requests and scheduling strategies of threads in O/S. In this paper, a new web-based application optimization model was proposed, which could classify and schedule the dynamic requests and static requests on scheduling core, and process the dynamic requests on the other cores. By this way, a simulation program, which is called SIM, was developed. Experiments have been done to validate the new model, and the results show that the new model can effectively improve the performance of multi-core web servers, and avoid the problems of ping-pong effect.

  7. THE SPINE OF THE COSMIC WEB

    SciTech Connect

    Aragon-Calvo, Miguel A.; Szalay, Alexander S.; Platen, Erwin; Van de Weygaert, Rien

    2010-11-01

    We present the SpineWeb framework for the topological analysis of the Cosmic Web and the identification of its walls, filaments, and cluster nodes. Based on the watershed segmentation of the cosmic density field, the SpineWeb method invokes the local adjacency properties of the boundaries between the watershed basins to trace the critical points in the density field and the separatrices defined by them. The separatrices are classified into walls and the spine, the network of filaments and nodes in the matter distribution. Testing the method with a heuristic Voronoi model yields outstanding results. Following the discussion of the test results, we apply the SpineWeb method to a set of cosmological N-body simulations. The latter illustrates the potential for studying the structure and dynamics of the Cosmic Web.

  8. Discrete-time quantum walk with feed-forward quantum coin

    PubMed Central

    Shikano, Yutaka; Wada, Tatsuaki; Horikawa, Junsei

    2014-01-01

    Constructing a discrete model like a cellular automaton is a powerful method for understanding various dynamical systems. However, the relationship between the discrete model and its continuous analogue is, in general, nontrivial. As a quantum-mechanical cellular automaton, a discrete-time quantum walk is defined to include various quantum dynamical behavior. Here we generalize a discrete-time quantum walk on a line into the feed-forward quantum coin model, which depends on the coin state of the previous step. We show that our proposed model has an anomalous slow diffusion characterized by the porous-medium equation, while the conventional discrete-time quantum walk model shows ballistic transport. PMID:24651053

  9. Discrete energy transport in collagen molecules

    NASA Astrophysics Data System (ADS)

    Alain, Mvogo; Germain, H. Ben-Bolie; Timoléon, C. Kofané

    2014-09-01

    The modulational instability in the three coupled α-polypeptide chains of a collagen molecule is investigated. Choosing symmetric and asymmetric solutions, and applying the so-called rotating-wave approximation, we describe the dynamics of the system by the discrete nonlinear Schrödinger (DNLS) equation. The linear stability analysis of the continuous wave solution is performed. The numerical simulations show the generation of trains of solitonic structures in the lattice with increasing amplitude as time progresses. The effect of damping and noise forces of the physiological temperature (T = 300 K) introduces an erratic behavior to the formed patterns, reinforcing the idea that the energy used in metabolic processes is confined to specific regions for efficiency.

  10. Discrete impulses in ephaptically coupled nerve fibers.

    PubMed

    Maïna, I; Tabi, C B; Ekobena Fouda, H P; Mohamadou, A; Kofané, T C

    2015-04-01

    We exclusively analyze the condition for modulated waves to emerge in two ephaptically coupled nerve fibers. Through the multiple scale expansion, it is shown that a set of coupled cable-like Hodgkin-Huxley equations can be reduced to a single differential-difference nonlinear equation. The standard approach of linear stability analysis of a plane wave is used to predict regions of parameters where nonlinear structures can be observed. Instability features are shown to be importantly controlled not only by the ephaptic coupling parameter, but also by the discreteness parameter. Numerical simulations, to verify our analytical predictions, are performed, and we explore the longtime dynamics of slightly perturbed plane waves in the coupled nerve fibers. On initially exciting only one fiber, quasi-perfect interneuronal communication is discussed along with the possibility of recruiting damaged or non-myelinated nerve fibers, by myelinated ones, into conduction. PMID:25933666

  11. Holography and Mottness: A Discrete Marriage

    NASA Astrophysics Data System (ADS)

    Phillips, Philip

    2012-02-01

    Gauge-gravity duality has allowed us to solve the physics of certain strongly coupled quantum mechanical systems using gravity. I will show how a space-time consisting of a charged black hole and a bulk Pauli coupling corresponds to a boundary theory with a dynamically generated gap (with no obvious symmetry breaking) and a massive rearrangement of the spectral weight as in classic Mott systems such as VO2. In this holographic set-up, the gap opens only when discrete scale invariance is present. This raises the possibility that the elusive symmetry that might be broken in Mott insulators, in general, might pertain to scale invariance. The relevance of this claim to recent theories of Mott systems that possess massless charged bosons is explored.

  12. 15N tracer application to evaluate nitrogen dynamics of food webs in two subtropical small-scale aquaculture ponds under different managements.

    PubMed

    Pucher, Johannes; Mayrhofer, Richard; El-Matbouli, Mansour; Focken, Ulfert

    2014-01-01

    Small, semi-intensively managed aquaculture ponds contribute significantly to the food security of small-scale farmers around the world. However, little is known about nutrient flows within natural food webs in such ponds in which fish production depends on the productivity of natural food resources. (15)N was applied as ammonium at 1.1 and 0.4 % of total nitrogen in a traditionally managed flow-through pond and a semi-intensively managed stagnant pond belonging to small-scale farmers in Northern Vietnam and traced through the natural food resources over 7 days. Small-sized plankton (1-60 μ m) was the dominant pelagic biomass in both ponds with higher biomass in the stagnant pond. This plankton assimilated major portions of the applied tracer and showed a high sedimentation and turnover rate. High re-activation of settled nutrients into the pelagic food web was observed. The tracer was removed more quickly from the flow-through pond than from the stagnant pond. A steady nutrient supply could increase fish production. PMID:24995524

  13. Class of discrete Gabor expansion

    NASA Astrophysics Data System (ADS)

    Li, Shidong; Healy, Dennis M., Jr.

    1994-03-01

    We present a new approach to studying a discrete Gabor expansion (DGE). We show that, in general, DGE is not the usual biorthogonal decomposition, but belongs to a larger and looser decomposition scheme which we call pseudo frame decomposition. It includes the DGE scheme proposed as a special case. The standard dual frame decomposition is also a special case. We derive algorithms using techniques for Gabor sequences to compute 'biorthogonal' sequences through proper matrix representation. Our algorithms involve solutions to a linear system to obtain the 'biorthogonal' windows. This approach provides a much broader mathematical view of the DGE, and therefore, establishes a wider mathematical foundation towards the theory of DGE. The general algorithm derived also provides a whole class of discrete Gabor expansions, among which 'good' ones can be generated. Simulation results are also provided.

  14. A FORTRAN Program for Discrete Discriminant Analysis

    ERIC Educational Resources Information Center

    Boone, James O.; Brewer, James K.

    1976-01-01

    A Fortran program is presented for discriminant analysis of discrete variables. The program assumes discrete, nominal data with no distributional, variance-covariance assumptions. The program handles a maximum of fifty predictor variables and twelve outcome groups. (Author/JKS)

  15. Efficient genetic algorithms using discretization scheduling.

    PubMed

    McLay, Laura A; Goldberg, David E

    2005-01-01

    In many applications of genetic algorithms, there is a tradeoff between speed and accuracy in fitness evaluations when evaluations use numerical methods with varying discretization. In these types of applications, the cost and accuracy vary from discretization errors when implicit or explicit quadrature is used to estimate the function evaluations. This paper examines discretization scheduling, or how to vary the discretization within the genetic algorithm in order to use the least amount of computation time for a solution of a desired quality. The effectiveness of discretization scheduling can be determined by comparing its computation time to the computation time of a GA using a constant discretization. There are three ingredients for the discretization scheduling: population sizing, estimated time for each function evaluation and predicted convergence time analysis. Idealized one- and two-dimensional experiments and an inverse groundwater application illustrate the computational savings to be achieved from using discretization scheduling. PMID:16156928

  16. Anomalies and Discrete Chiral Symmetries

    SciTech Connect

    Creutz, M.

    2009-09-07

    The quantum anomaly that breaks the U(1) axial symmetry of massless multi-flavored QCD leaves behind a discrete flavor-singlet chiral invariance. With massive quarks, this residual symmetry has a close connection with the strong CP-violating parameter theta. One result is that if the lightest quarks are degenerate, then a first order transition will occur when theta passes through pi. The resulting framework helps clarify when the rooting prescription for extrapolating in the number of flavors is valid.

  17. Discrete-contact nanowire photovoltaics

    NASA Astrophysics Data System (ADS)

    Chitambar, Michelle J.; Wen, Wen; Maldonado, Stephen

    2013-11-01

    A series of finite-element simulations have been performed to assess the operational characteristics of a new semiconductor nanowire solar cell design operating under high-level injection conditions. Specifically, the steady-state current-voltage behavior of a cylindrical silicon (Si) nanowire with a series of discrete, ohmic-selective contacts under intense sunlight illumination was investigated. The scope of the analysis was limited to only the factors that impact the net internal quantum yield for solar to electricity conversion. No evaluations were performed with regards to optical light trapping in the modeled structures. Several aspects in a discrete-contact nanowire device that could impact operation were explored, including the size and density of ohmic-selective contacts, the size of the nanowire, the electronic quality and conductivity of the nanowire, the surface defect density of the nanowire, and the type of ohmic selectivity employed at each contact. The analysis showed that there were ranges of values for each parameter that supported good to excellent photoresponses, with certain combinations of experimentally attainable material properties yielding internal energy conversion efficiencies at the thermodynamic limit for a single junction cell. The merits of the discrete-contact nanowire cell were contrasted with "conventional" nanowire photovoltaic cells featuring a uniform conformal contact and also with planar point-contact solar cells. The unique capacity of the discrete-contact nanowire solar cell design to operate at useful energy conversion efficiencies with low quality semiconductor nanowires (i.e., possessing short charge-carrier lifetimes) with only light doping is discussed. This work thus defines the impetus for future experimental work aimed at developing this photovoltaic architecture.

  18. A Case Study in Web 2.0 Application Development

    NASA Astrophysics Data System (ADS)

    Marganian, P.; Clark, M.; Shelton, A.; McCarty, M.; Sessoms, E.

    2010-12-01

    Recent web technologies focusing on languages, frameworks, and tools are discussed, using the Robert C. Byrd Green Bank Telescopes (GBT) new Dynamic Scheduling System as the primary example. Within that example, we use a popular Python web framework, Django, to build the extensive web services for our users. We also use a second complimentary server, written in Haskell, to incorporate the core scheduling algorithms. We provide a desktop-quality experience across all the popular browsers for our users with the Google Web Toolkit and judicious use of JQuery in Django templates. Single sign-on and authentication throughout all NRAO web services is accomplished via the Central Authentication Service protocol, or CAS.

  19. Discrete Mechanics and Optimal Control for Space Trajectory Design

    NASA Astrophysics Data System (ADS)

    Moore, Ashley

    Space trajectory design is often achieved through a combination of dynamical systems theory and optimal control. The union of trajectory design techniques utilizing invariant manifolds of the planar circular restricted three-body problem and the optimal control scheme Discrete Mechanics and Optimal Control (DMOC) facilitates the design of low-energy trajectories in the N-body problem. In particular, DMOC is used to optimize a trajectory from the Earth to the Moon in the 4-body problem, removing the mid-course change in velocity, Delta V, usually necessary for such a trajectory while still exploiting the structure from the invariant manifolds. This thesis also focuses on how to adapt DMOC, a method devised with a constant step size, for the highly nonlinear dynamics involved in trajectory design. Mesh refinement techniques that aim to reduce discretization errors in the solution and energy evolution and their effect on DMOC optimization are explored and compared with trajectories created using time adaptive variational integrators. Furthermore, a time adaptive form of DMOC is developed that allows for a variable step size that is updated throughout the optimization process. Time adapted DMOC is based on a discretization of Hamilton's principle applied to the time adapted Lagrangian of the optimal control problem. Variations of the discrete action of the optimal control Lagrangian lead to discrete Euler-Lagrange equations that can be enforced as constraints for a boundary value problem. This new form of DMOC leads to the accurate and efficient solution of optimal control problems with highly nonlinear dynamics. Time adapted DMOC is tested on several space trajectory problems including the elliptical orbit transfer in the 2-body problem and the reconfiguration of a cubesat.

  20. Symmetric Discrete Orthonormal Stockwell Transform

    NASA Astrophysics Data System (ADS)

    Wang, Yanwei; Orchard, Jeff

    2008-09-01

    The Stockwell Transform (ST) is a time-frequency signal decomposition that is gaining in popularity, likely because of its direct relation with the Fourier Transform (FT). A discrete and non-redundant version of the ST, denoted the Discrete Orthonormal Stockwell Transform (DOST), has made the use of the ST more feasible. However, the matrix multiplication required by the DOST can still be a formidable computation, especially for high-dimensional data. Moreover, the symmetric property of the ST and FT is not present in the DOST. In this paper, we investigate a new Symmetric Discrete Orthonormal Stockwell Transform (SDOST) that still keeps the non-redundant multiresolution features of the DOST, while maintaining a symmetry property similar to that of the FT. First, we give a brief introduction for the ST and the DOST. Then we analyze the DOST coefficients and modify the transform to get a symmetric version. A small experiment shows that the SDOST has kept the abilities of the DOST and demonstrates the advantage of symmetry when applying the SDOST.

  1. Interference in discrete Wigner functions

    SciTech Connect

    Cormick, Cecilia; Paz, Juan Pablo

    2006-12-15

    We analyze some features of the class of discrete Wigner functions that was recently introduced by Gibbons et al. [Phys. Rev. A 70, 062101 (2004)] to represent quantum states of systems with power-of-prime dimensional Hilbert spaces. We consider ''cat'' states obtained as coherent superpositions of states with positive Wigner function; for such states we show that the oscillations of the discrete Wigner function typically spread over the entire discrete phase space (including the regions where the two interfering states are localized). This is a generic property, which is in sharp contrast with the usual attributes of Wigner functions that make them useful candidates to display the existence of quantum coherence through oscillations. However, it is possible to find subsets of cat states with a natural phase-space representation, in which the oscillatory regions remain localized. We show that this can be done for interesting families of stabilizer states used in quantum error-correcting codes, and illustrate this by analyzing the phase-space representation of the five-qubit error-correcting code.

  2. Invasive Mutualists Erode Native Pollination Webs

    PubMed Central

    Aizen, Marcelo A; Morales, Carolina L; Morales, Juan M

    2008-01-01

    Plant–animal mutualisms are characterized by weak or asymmetric mutual dependences between interacting species, a feature that could increase community stability. If invasive species integrate into mutualistic webs, they may alter web structure, with consequences for species persistence. However, the effect of alien mutualists on the architecture of plant–pollinator webs remains largely unexplored. We analyzed the extent of mutual dependency between interacting species, as a measure of mutualism strength, and the connectivity of 10 paired plant–pollinator webs, eight from forests of the southern Andes and two from oceanic islands, with different incidences of alien species. Highly invaded webs exhibited weaker mutualism than less-invaded webs. This potential increase in network stability was the result of a disproportionate increase in the importance and participation of alien species in the most asymmetric interactions. The integration of alien mutualists did not alter overall network connectivity, but links were transferred from generalist native species to super-generalist alien species during invasion. Therefore, connectivity among native species declined in highly invaded webs. These modifications in the structure of pollination webs, due to dominance of alien mutualists, can leave many native species subject to novel ecological and evolutionary dynamics. PMID:18271628

  3. A coupled stable isotope-size spectrum approach to understanding pelagic food-web dynamics: A case study from the southwest sub-tropical Pacific

    NASA Astrophysics Data System (ADS)

    Hunt, B. P. V.; Allain, V.; Menkes, C.; Lorrain, A.; Graham, B.; Rodier, M.; Pagano, M.; Carlotti, F.

    2015-03-01

    This study investigated the food web structure of the oligotrophic picophytoplankton-dominated pelagic ecosystem in the vicinity of New Caledonia, within the Archipelagic Deep Basin (ARCH) province of the southwest sub-tropical Pacific. Nitrogen stable isotope (δ15N) data were collected for mesozooplankton (0.2-2 mm), macrozooplankton (2-20 mm), micronekton (20-200 mm) and nekton (>200 mm) during 2002-2004 and 2011. Using a coupled δ15N size-spectrum approach, we estimated (1) organism trophic level (TL); (2) food chain length (FCL); (3) predator prey mass ratio (PPMR); and (4) transfer efficiency (TE). The role of phytoplankton size structure in determining these parameters was investigated. Applying a trophic enrichment factor (TEF) of 3.4, maximum TL was calculated at ~5. The number of TLs spanned by each length class was 1.97 for mesozooplankton, 2.07 for macrozooplankton, 2.75 for micronekton, and 2.21 for nekton. Estimated PPMR was 10,099:1 for mesozooplankton, 3683:1 for macrozooplankton/micronekton, and 2.44×105:1 for nekton, corresponding to TEs of 6.3%, 8.5% and 2.4%, respectively. PPMR and TE were strongly influenced by the TEF used, and TEF 3.4 likely over and underestimated PPMR and TE, respectively, for mesozooplankton and macrozooplankton/micronekton. Comparatively low PPMR for mesozooplankton and macrozooplankton/micronekton indicated longer food chains and higher connectivity within these groups than for the nekton. Conversely, the high PPMR yet high trophic niche width for the nekton indicated that they prey primarily on macrozooplankton/micronekton, with a relatively high degree of dietary specialisation. Our results are discussed in the context of other marine food webs. The ARCH food chain was found to be 1-1.5 trophic levels longer than the eutrophic micro-/nanophytoplankton-dominated Californian upwelling system, providing empirical support for the role of phytoplankton size in determining FCL. Group specific PPMR estimates demonstrated

  4. Quantization of systems with temporally varying discretization. II. Local evolution moves

    SciTech Connect

    Höhn, Philipp A.

    2014-10-15

    Several quantum gravity approaches and field theory on an evolving lattice involve a discretization changing dynamics generated by evolution moves. Local evolution moves in variational discrete systems (1) are a generalization of the Pachner evolution moves of simplicial gravity models, (2) update only a small subset of the dynamical data, (3) change the number of kinematical and physical degrees of freedom, and (4) generate a dynamical (or canonical) coarse graining or refining of the underlying discretization. To systematically explore such local moves and their implications in the quantum theory, this article suitably expands the quantum formalism for global evolution moves, constructed in Paper I [P. A. Höhn, “Quantization of systems with temporally varying discretization. I. Evolving Hilbert spaces,” J. Math. Phys. 55, 083508 (2014); e-print http://arxiv.org/abs/arXiv:1401.6062 [gr-qc

  5. Global exponential stability in continuous-time and discrete-time delayed bidirectional neural networks

    NASA Astrophysics Data System (ADS)

    Mohamad, Sannay

    2001-11-01

    Convergence dynamics of continuous-time bidirectional neural networks with constant transmission delays are studied. Without assuming the symmetry of synaptic connection weights and the monotonicity and differentiability of activation functions, Lyapunov functionals and Halanay-type inequalities are constructed and employed to derive delay independent sufficient conditions under which the continuous-time networks converge exponentially to the equilibria associated with temporally uniform external inputs to the networks. Discrete-time analogues of the continuous-time networks are formulated and we study their dynamical characteristics. It is shown that the convergence dynamics of the continuous-time networks are preserved by the discrete-time analogues without any restriction on the discretization step-size. Several examples are given to illustrate the advantages of the discrete-time analogues in numerically simulating the continuous-time networks.

  6. Quantization of systems with temporally varying discretization. II. Local evolution moves

    NASA Astrophysics Data System (ADS)

    Höhn, Philipp A.

    2014-10-01

    Several quantum gravity approaches and field theory on an evolving lattice involve a discretization changing dynamics generated by evolution moves. Local evolution moves in variational discrete systems (1) are a generalization of the Pachner evolution moves of simplicial gravity models, (2) update only a small subset of the dynamical data, (3) change the number of kinematical and physical degrees of freedom, and (4) generate a dynamical (or canonical) coarse graining or refining of the underlying discretization. To systematically explore such local moves and their implications in the quantum theory, this article suitably expands the quantum formalism for global evolution moves, constructed in Paper I [P. A. Höhn, "Quantization of systems with temporally varying discretization. I. Evolving Hilbert spaces," J. Math. Phys. 55, 083508 (2014); e-print arXiv:1401.6062 [gr-qc

  7. CERES Web Links

    Atmospheric Science Data Center

    2013-03-21

    ...   Web Links to Relevant CERES Information Relevant information about CERES, CERES references, ... Instrument Working Group Home Page Aerosol Retrieval Web Page  (Center for Satellite Applications and Research) ...

  8. Promoting Your Web Site.

    ERIC Educational Resources Information Center

    Raeder, Aggi

    1997-01-01

    Discussion of ways to promote sites on the World Wide Web focuses on how search engines work and how they retrieve and identify sites. Appropriate Web links for submitting new sites and for Internet marketing are included. (LRW)

  9. Parasites in food webs: the ultimate missing links.

    PubMed

    Lafferty, Kevin D; Allesina, Stefano; Arim, Matias; Briggs, Cherie J; De Leo, Giulio; Dobson, Andrew P; Dunne, Jennifer A; Johnson, Pieter T J; Kuris, Armand M; Marcogliese, David J; Martinez, Neo D; Memmott, Jane; Marquet, Pablo A; McLaughlin, John P; Mordecai, Erin A; Pascual, Mercedes; Poulin, Robert; Thieltges, David W

    2008-06-01

    Parasitism is the most common consumer strategy among organisms, yet only recently has there been a call for the inclusion of infectious disease agents in food webs. The value of this effort hinges on whether parasites affect food-web properties. Increasing evidence suggests that parasites have the potential to uniquely alter food-web topology in terms of chain length, connectance and robustness. In addition, parasites might affect food-web stability, interaction strength and energy flow. Food-web structure also affects infectious disease dynamics because parasites depend on the ecological networks in which they live. Empirically, incorporating parasites into food webs is straightforward. We may start with existing food webs and add parasites as nodes, or we may try to build food webs around systems for which we already have a good understanding of infectious processes. In the future, perhaps researchers will add parasites while they construct food webs. Less clear is how food-web theory can accommodate parasites. This is a deep and central problem in theoretical biology and applied mathematics. For instance, is representing parasites with complex life cycles as a single node equivalent to representing other species with ontogenetic niche shifts as a single node? Can parasitism fit into fundamental frameworks such as the niche model? Can we integrate infectious disease models into the emerging field of dynamic food-web modelling? Future progress will benefit from interdisciplinary collaborations between ecologists and infectious disease biologists. PMID:18462196

  10. Parasites in food webs: the ultimate missing links

    PubMed Central

    Lafferty, Kevin D; Allesina, Stefano; Arim, Matias; Briggs, Cherie J; De Leo, Giulio; Dobson, Andrew P; Dunne, Jennifer A; Johnson, Pieter T J; Kuris, Armand M; Marcogliese, David J; Martinez, Neo D; Memmott, Jane; Marquet, Pablo A; McLaughlin, John P; Mordecai, Erin A; Pascual, Mercedes; Poulin, Robert; Thieltges, David W

    2008-01-01

    Parasitism is the most common consumer strategy among organisms, yet only recently has there been a call for the inclusion of infectious disease agents in food webs. The value of this effort hinges on whether parasites affect food-web properties. Increasing evidence suggests that parasites have the potential to uniquely alter food-web topology in terms of chain length, connectance and robustness. In addition, parasites might affect food-web stability, interaction strength and energy flow. Food-web structure also affects infectious disease dynamics because parasites depend on the ecological networks in which they live. Empirically, incorporating parasites into food webs is straightforward. We may start with existing food webs and add parasites as nodes, or we may try to build food webs around systems for which we already have a good understanding of infectious processes. In the future, perhaps researchers will add parasites while they construct food webs. Less clear is how food-web theory can accommodate parasites. This is a deep and central problem in theoretical biology and applied mathematics. For instance, is representing parasites with complex life cycles as a single node equivalent to representing other species with ontogenetic niche shifts as a single node? Can parasitism fit into fundamental frameworks such as the niche model? Can we integrate infectious disease models into the emerging field of dynamic food-web modelling? Future progress will benefit from interdisciplinary collaborations between ecologists and infectious disease biologists. PMID:18462196

  11. Discrete breathers in the Peyrard-Bishop model of DNA

    NASA Astrophysics Data System (ADS)

    Fakhretdinov, M. I.; Zakir'yanov, F. K.

    2013-07-01

    The Peyrard-Bishop model, which describes the dynamics of a DNA molecule, is considered. The solutions that represent discrete breathers are derived in the framework of the model. The dynamic stability of the stationary discrete breathers with respect to small perturbations is studied. The solutions can be interpreted as the experimentally observed opening of the base pairs in the DNA double strand at the initial stages of denaturation. It is also demonstrated that the model allows the existence of mobile breathers that move in the absence of perturbations in the environment. The interaction of the mobile breathers is numerically simulated. The Peierls-Nabarro barrier and the effective mass and velocity of the breather are estimated.

  12. Chemistry on the Web.

    ERIC Educational Resources Information Center

    Mounts, Richard D.

    1996-01-01

    Gives an overview of the World Wide Web, describes what is required to access it, and highlights some of the features of interest to chemists such as Web-based chemical databases that feature user-interactive molecular structures and chemical movies. Lists Internet chemistry resources designed for Web browsers and locations for obtaining Web…

  13. Evaluating Web Usability

    ERIC Educational Resources Information Center

    Snider, Jean; Martin, Florence

    2012-01-01

    Web usability focuses on design elements and processes that make web pages easy to use. A website for college students was evaluated for underutilization. One-on-one testing, focus groups, web analytics, peer university review and marketing focus group and demographic data were utilized to conduct usability evaluation. The results indicated that…

  14. Architecture and the Web.

    ERIC Educational Resources Information Center

    Money, William H.

    Instructors should be concerned with how to incorporate the World Wide Web into an information systems (IS) curriculum organized across three areas of knowledge: information technology, organizational and management concepts, and theory and development of systems. The Web fits broadly into the information technology component. For the Web to be…

  15. WWW: Neuroscience Web Sites

    ERIC Educational Resources Information Center

    Liu, Dennis

    2006-01-01

    The human brain contains an estimated 100 billion neurons, and browsing the Web, one might be led to believe that there's a Web site for every one of those cells. It's no surprise that there are lots of Web sites concerning the nervous system. After all, the human brain is toward the top of nearly everyone's list of favorite organs and of…

  16. Commercial Web Site Links.

    ERIC Educational Resources Information Center

    Thelwall, Mike

    2001-01-01

    Discusses business use of the Web and related search engine design issues as well as research on general and academic links before reporting on a survey of the links published by a collection of business Web sites. Results indicate around 66% of Web sites do carry external links, most of which are targeted at a specific purpose, but about 17%…

  17. Discrete quadratic solitons with competing second-harmonic components

    SciTech Connect

    Setzpfandt, Frank; Pertsch, Thomas; Sukhorukov, Andrey A.

    2011-11-15

    We describe families of discrete solitons in quadratic waveguide arrays supported by competing cascaded nonlinear interactions between one fundamental and two second-harmonic modes. We characterize the existence, stability, and excitation dynamics of these solitons and show that their features may resemble those of solitons in saturable media. Our results also demonstrate that a power threshold may appear for soliton formation, leading to a suppression of beam self-focusing which explains recent experimental observations.

  18. Discrete-time infinity control problem with measurement feedback

    NASA Technical Reports Server (NTRS)

    Stoorvogel, A. A.; Saberi, A.; Chen, B. M.

    1992-01-01

    The paper is concerned with the discrete-time H(sub infinity) control problem with measurement feedback. The authors extend previous results by having weaker assumptions on the system parameters. The authors also show explicitly the structure of H(sub infinity) controllers. Finally, they show that it is in certain cases possible, without loss of performance, to reduce the dynamical order of the controllers.

  19. Discrete element modeling of subglacial sediment deformation

    NASA Astrophysics Data System (ADS)

    Damsgaard, Anders; Egholm, David L.; Piotrowski, Jan A.; Tulaczyk, Slawek; Larsen, Nicolaj K.; Tylmann, Karol

    2013-12-01

    The Discrete Element Method (DEM) is used in this study to explore the highly nonlinear dynamics of a granular bed when exposed to stress conditions comparable to those at the bed of warm-based glaciers. Complementary to analog experiments, the numerical approach allows a detailed analysis of the material dynamics and the shear zone development during progressive shear strain. The geometry of the heterogeneous stress network is visible in the form of force-carrying grain bridges and adjacent, volumetrically dominant, inactive zones. We demonstrate how the shear zone thickness and dilation depend on the level of normal (overburden) stress, and we show how high normal stress can mobilize material to great depths. The particle rotational axes tend to align with progressive shear strain, with rotations both along and reverse to the shear direction. The results from successive laboratory ring-shear experiments on simple granular materials are compared to results from similar numerical experiments. The simulated DEM material and all tested laboratory materials deform by an elastoplastic rheology under the applied effective normal stress. These results demonstrate that the DEM is a viable alternative to continuum models for small-scale analysis of sediment deformation. It can be used to simulate the macromechanical behavior of simple granular sediments, and it provides an opportunity to study how microstructures in subglacial sediments are formed during progressive shear strain.

  20. Monarch butterfly spatially discrete advection model.

    PubMed

    Yakubu, Abdul-Aziz; Sáenz, Roberto; Stein, Julie; Jones, Laura E

    2004-08-01

    We study the population cycles of the Monarch butterfly using one of the simplest systems incorporating both migration and local dynamics. The annual migration of the Monarch involves four generations. Members of Generations 1-3 (occasionally 4) migrate from the over-wintering site in Central Mexico to breeding grounds that extend as far north as the Northern United States and Southern Canada. A portion of the Generation 3 and all members of the Generation 4 butterflies begin their return to the over-wintering grounds in August through October where they enter reproductive diapause for several months. We developed a simple discrete-time island chain model in which different fecundity functions are used to model the reproductive strategies of each generation. The fecundity functions are selected from broad classes of functions that capture the effects of either contest or scramble intraspecific competition in the Monarch population. The objectives of our research are multiple and include the study of the generationally dependent intraspecific competition and its effect on the pool size of migrants as well as the persistence of the overall butterfly populations. The stage structure used in modeling the Monarch butterfly dynamics and their generationally dependent reproductive strategies naturally support fluctuating patterns and multiple attractors. The implications of these fluctuations and attractors on the long-term survival of the Monarch butterfly population are explored. PMID:15234616