Science.gov

Sample records for dynamically generated open

  1. Automatic Generation of OpenMP Directives and Its Application to Computational Fluid Dynamics Codes

    NASA Technical Reports Server (NTRS)

    Yan, Jerry; Jin, Haoqiang; Frumkin, Michael; Yan, Jerry (Technical Monitor)

    2000-01-01

    The shared-memory programming model is a very effective way to achieve parallelism on shared memory parallel computers. As great progress was made in hardware and software technologies, performance of parallel programs with compiler directives has demonstrated large improvement. The introduction of OpenMP directives, the industrial standard for shared-memory programming, has minimized the issue of portability. In this study, we have extended CAPTools, a computer-aided parallelization toolkit, to automatically generate OpenMP-based parallel programs with nominal user assistance. We outline techniques used in the implementation of the tool and discuss the application of this tool on the NAS Parallel Benchmarks and several computational fluid dynamics codes. This work demonstrates the great potential of using the tool to quickly port parallel programs and also achieve good performance that exceeds some of the commercial tools.

  2. OMG: Open Molecule Generator

    PubMed Central

    2012-01-01

    Computer Assisted Structure Elucidation has been used for decades to discover the chemical structure of unknown compounds. In this work we introduce the first open source structure generator, Open Molecule Generator (OMG), which for a given elemental composition produces all non-isomorphic chemical structures that match that elemental composition. Furthermore, this structure generator can accept as additional input one or multiple non-overlapping prescribed substructures to drastically reduce the number of possible chemical structures. Being open source allows for customization and future extension of its functionality. OMG relies on a modified version of the Canonical Augmentation Path, which grows intermediate chemical structures by adding bonds and checks that at each step only unique molecules are produced. In order to benchmark the tool, we generated chemical structures for the elemental formulas and substructures of different metabolites and compared the results with a commercially available structure generator. The results obtained, i.e. the number of molecules generated, were identical for elemental compositions having only C, O and H. For elemental compositions containing C, O, H, N, P and S, OMG produces all the chemically valid molecules while the other generator produces more, yet chemically impossible, molecules. The chemical completeness of the OMG results comes at the expense of being slower than the commercial generator. In addition to being open source, OMG clearly showed the added value of constraining the solution space by using multiple prescribed substructures as input. We expect this structure generator to be useful in many fields, but to be especially of great importance for metabolomics, where identifying unknown metabolites is still a major bottleneck. PMID:22985496

  3. OMG: Open Molecule Generator.

    PubMed

    Peironcely, Julio E; Rojas-Chertó, Miguel; Fichera, Davide; Reijmers, Theo; Coulier, Leon; Faulon, Jean-Loup; Hankemeier, Thomas

    2012-01-01

    Computer Assisted Structure Elucidation has been used for decades to discover the chemical structure of unknown compounds. In this work we introduce the first open source structure generator, Open Molecule Generator (OMG), which for a given elemental composition produces all non-isomorphic chemical structures that match that elemental composition. Furthermore, this structure generator can accept as additional input one or multiple non-overlapping prescribed substructures to drastically reduce the number of possible chemical structures. Being open source allows for customization and future extension of its functionality. OMG relies on a modified version of the Canonical Augmentation Path, which grows intermediate chemical structures by adding bonds and checks that at each step only unique molecules are produced. In order to benchmark the tool, we generated chemical structures for the elemental formulas and substructures of different metabolites and compared the results with a commercially available structure generator. The results obtained, i.e. the number of molecules generated, were identical for elemental compositions having only C, O and H. For elemental compositions containing C, O, H, N, P and S, OMG produces all the chemically valid molecules while the other generator produces more, yet chemically impossible, molecules. The chemical completeness of the OMG results comes at the expense of being slower than the commercial generator. In addition to being open source, OMG clearly showed the added value of constraining the solution space by using multiple prescribed substructures as input. We expect this structure generator to be useful in many fields, but to be especially of great importance for metabolomics, where identifying unknown metabolites is still a major bottleneck. PMID:22985496

  4. Nonlinear vortex dynamics in open nonequilibrium systems with bulk mass loss and a generation mechanism for tornadoes and typhoons

    NASA Astrophysics Data System (ADS)

    Pashitskii, É. A.

    2010-06-01

    Based on a general model of nonlinear vortex dynamics in open thermodynamically nonequilibrium systems with bulk or surface mass losses, an analysis is presented of the mechanism of generation of violent atmospheric vortices (tornadoes, typhoons, cyclones) associated with the formation of deep cloud systems by intense condensation of water vapor from moist air cooled below the dew point. Simple particular solutions to the Navier-Stokes equations are found that describe both axisymmetric and nonaxisymmetric incompressible vortex motions involving radial and vertical flows with viscous dissipation vanishing identically everywhere except for a thin shear layer at the boundary of the condensation region. It is shown that the nonlinear convective and local Coriolis forces generated by radial inflow in the presence of a background vorticity due to a global Coriolis force (the Earth’s rotation) accelerate the solid-body rotation in the vortex core either exponentially or in a nonlinear regime of finite-time blow-up. Due to updrafts, such a vortex is characterized by a strong helicity. This mechanism explains a number of observed properties and characteristics of the structure and evolution of tornadoes and typhoons. Upper estimates are found for the kinetic energies of violent atmospheric vortices. It is shown that increase in rotational kinetic energy of atmospheric vortices with constant vortex-core radii is consistent with energy and momentum conservation, because radial inflow continually supplies the required amount of rotational kinetic energy drawn from the ambient atmosphere to an open system.

  5. Nonlinear vortex dynamics in open nonequilibrium systems with bulk mass loss and a generation mechanism for tornadoes and typhoons

    SciTech Connect

    Pashitskii, E. A.

    2010-06-15

    Based on a general model of nonlinear vortex dynamics in open thermodynamically nonequilibrium systems with bulk or surface mass losses, an analysis is presented of the mechanism of generation of violent atmospheric vortices (tornadoes, typhoons, cyclones) associated with the formation of deep cloud systems by intense condensation of water vapor from moist air cooled below the dew point. Simple particular solutions to the Navier-Stokes equations are found that describe both axisymmetric and nonaxisymmetric incompressible vortex motions involving radial and vertical flows with viscous dissipation vanishing identically everywhere except for a thin shear layer at the boundary of the condensation region. It is shown that the nonlinear convective and local Coriolis forces generated by radial inflow in the presence of a background vorticity due to a global Coriolis force (the Earth's rotation) accelerate the solid-body rotation in the vortex core either exponentially or in a nonlinear regime of finite-time blow-up. Due to updrafts, such a vortex is characterized by a strong helicity. This mechanism explains a number of observed properties and characteristics of the structure and evolution of tornadoes and typhoons. Upper estimates are found for the kinetic energies of violent atmospheric vortices. It is shown that increase in rotational kinetic energy of atmospheric vortices with constant vortex-core radii is consistent with energy and momentum conservation, because radial inflow continually supplies the required amount of rotational kinetic energy drawn from the ambient atmosphere to an open system.

  6. Open boundary molecular dynamics

    NASA Astrophysics Data System (ADS)

    Delgado-Buscalioni, R.; Sablić, J.; Praprotnik, M.

    2015-09-01

    This contribution analyzes several strategies and combination of methodologies to perform molecular dynamic simulations in open systems. Here, the term open indicates that the total system has boundaries where transfer of mass, momentum and energy can take place. This formalism, which we call Open Boundary Molecular Dynamics (OBMD), can act as interface of different schemes, such as Adaptive Resolution Scheme (AdResS) and Hybrid continuum-particle dynamics to link atomistic, coarse-grained (CG) and continuum (Eulerian) fluid dynamics in the general framework of fluctuating Navier-Stokes equations. The core domain of the simulation box is solved using all-atom descriptions. The CG layer introduced using AdResS is located at the outer part of the open box to make feasible the insertion of large molecules into the system. Communications between the molecular system and the outer world are carried out in the outer layers, called buffers. These coupling preserve momentum and mass conservation laws and can thus be linked with Eulerian hydro- dynamic solvers. In its simpler form, OBMD allows, however, to impose a local pressure tensor and a heat flux across the system's boundaries. For a one component molecular system, the external normal pressure and temperature determine the external chemical potential and thus the independent parameters of a grand-canonical ensemble simulation. Extended ensembles under non-equilibrium stationary states can also be simulated as well as time dependent forcings (e.g. oscillatory rheology). To illustrate the robustness of the combined OBMD-AdResS method, we present simulations of star-polymer melts at equilibrium and in sheared flow.

  7. Baryons with open beauty dynamically generated from meson-baryon interaction in the extended local hidden gauge approach

    NASA Astrophysics Data System (ADS)

    Liang, Wei-Hong; Xiao, C. W.; Oset, E.

    2016-05-01

    In this talk we review the results about the interaction of B ¯N , B ¯Δ, B ¯*N and B ¯*Δ states with beauty B = 1, together with their coupled channels, using the extended local hidden gauge approach. The Λb(5912) and Λb(5920) observed in the experiment are dynamically generated from the meson-baryon interaction, and they couple mostly to B ¯*N , which are degenerate with the Weinberg-Tomozawa interaction. In addition, three more states with I = 0 and eight more states with I = 1 are predicted.

  8. Dynamical Mass Generation

    SciTech Connect

    Bashir, A.; Raya, A.

    2006-09-25

    Understanding the origin of mass, in particular that of the fermions, is one of the most uncanny problems which lie at the very frontiers of particle physics. Although the celebrated Standard Model accommodates these masses in a gauge invariant fashion, it fails to predict their values. Moreover, the mass thus generated accounts for only a very small percentage of the mass which permeates the visible universe. Most of the observed mass is accounted for by the strong interactions which bind quarks into protons and neutrons. How does that exactly happen in its quantitative details is still an unsolved mystery. Lattice formulation of quantum chromodynamics (QCD) or continuum studies of its Schwinger-Dyson equations (SDEs) are two of the non-perturbative means to try to unravel how quarks, starting from negligible current masses can acquire enormously large constituent masses to account for the observed proton and neutron masses. Analytical studies of SDEs in this context are extremely hard as one has to resort to truncation schemes whose quantitative reliability can be established only after a very careful analysis. Let alone the far more complicated realm of QCD, arriving at reliable truncation schemes in simpler scenarios such as quantum electrodynamics (QED) has also proved to be a hard nut to crack. In the last years, there has been an increasing group of physicists in Mexico which is taking up the challenge of understanding how the dynamical generation of mass can be understood in a reliable way through SDEs of gauge theories in various contexts such as (i) in arbitrary space-time dimensions d as well as d {<=} 4 (ii) finite temperatures and (ii) in the presence of magnetic fields. In this article, we summarise some of this work.

  9. Dynamical semigroup for unbounded repeated perturbation of an open system

    NASA Astrophysics Data System (ADS)

    Tamura, Hiroshi; Zagrebnov, Valentin A.

    2016-02-01

    We consider a dynamical semigroup for unbounded Kossakowski-Lindblad-Davies generator corresponding to evolution of an open system for a tuned repeated harmonic perturbation. For this evolution, we prove the existence of uniquely determined minimal trace-preserving strongly continuous dynamical semigroups on the space of states. The corresponding dual W∗-dynamical system is shown to be unital quasi-free and completely positive automorphisms of the canonical commutation relation-algebra.

  10. Generational Dynamics and Librarianship: Managing Generation X.

    ERIC Educational Resources Information Center

    Cooper, Julie F.; Cooper, Eric A.

    1998-01-01

    Explores the abilities of Generation X (individuals born 1961 to 1981) librarians to respond to the evolving needs of society. Highlights include age demographics, generational attributes, technology, and the seniority system. (PEN)

  11. Dynamical generation of pseudoscalar resonances

    SciTech Connect

    Albaladejo, M.; Oller, J. A.; Roca, L.

    2010-11-01

    We study the interactions between the f{sub 0}(980) and a{sub 0}(980) scalar resonances and the lightest pseudoscalar mesons. We first obtain the elementary interaction amplitudes, or interacting kernels, without including any ad hoc free parameter. This is achieved by using previous results on the nature of the lightest scalar resonances as dynamically generated from the rescattering of S-wave two-meson pairs. Afterwards, the interaction kernels are unitarized and the final S-wave amplitudes result. We find that these interactions are very rich and generate a large amount of pseudoscalar resonances that could be associated with the K(1460), {pi}(1300), {pi}(1800), {eta}(1475), and X(1835). We also consider the exotic channels with isospin 3/2 and 1, the latter having positive G-parity. The former could also be resonant in agreement with a previous prediction.

  12. OCSEGen: Open Components and Systems Environment Generator

    NASA Technical Reports Server (NTRS)

    Tkachuk, Oksana

    2014-01-01

    To analyze a large system, one often needs to break it into smaller components.To analyze a component or unit under analysis, one needs to model its context of execution, called environment, which represents the components with which the unit interacts. Environment generation is a challenging problem, because the environment needs to be general enough to uncover unit errors, yet precise enough to make the analysis tractable. In this paper, we present a tool for automated environment generation for open components and systems. The tool, called OCSEGen, is implemented on top of the Soot framework. We present the tool's current support and discuss its possible future extensions.

  13. Colloquium: Non-Markovian dynamics in open quantum systems

    NASA Astrophysics Data System (ADS)

    Breuer, Heinz-Peter; Laine, Elsi-Mari; Piilo, Jyrki; Vacchini, Bassano

    2016-04-01

    The dynamical behavior of open quantum systems plays a key role in many applications of quantum mechanics, examples ranging from fundamental problems, such as the environment-induced decay of quantum coherence and relaxation in many-body systems, to applications in condensed matter theory, quantum transport, quantum chemistry, and quantum information. In close analogy to a classical Markovian stochastic process, the interaction of an open quantum system with a noisy environment is often modeled phenomenologically by means of a dynamical semigroup with a corresponding time-independent generator in Lindblad form, which describes a memoryless dynamics of the open system typically leading to an irreversible loss of characteristic quantum features. However, in many applications open systems exhibit pronounced memory effects and a revival of genuine quantum properties such as quantum coherence, correlations, and entanglement. Here recent theoretical results on the rich non-Markovian quantum dynamics of open systems are discussed, paying particular attention to the rigorous mathematical definition, to the physical interpretation and classification, as well as to the quantification of quantum memory effects. The general theory is illustrated by a series of physical examples. The analysis reveals that memory effects of the open system dynamics reflect characteristic features of the environment which opens a new perspective for applications, namely, to exploit a small open system as a quantum probe signifying nontrivial features of the environment it is interacting with. This Colloquium further explores the various physical sources of non-Markovian quantum dynamics, such as structured environmental spectral densities, nonlocal correlations between environmental degrees of freedom, and correlations in the initial system-environment state, in addition to developing schemes for their local detection. Recent experiments addressing the detection, quantification, and control of

  14. Dynamics of Mouth Opening in Hydra.

    PubMed

    Carter, Jason A; Hyland, Callen; Steele, Robert E; Collins, Eva-Maria S

    2016-03-01

    Hydra, a simple freshwater animal famous for its regenerative capabilities, must tear a hole through its epithelial tissue each time it opens its mouth. The feeding response of Hydra has been well-characterized physiologically and is regarded as a classical model system for environmental chemical biology. However, due to a lack of in vivo labeling and imaging tools, the biomechanics of mouth opening have remained completely unexplored. We take advantage of the availability of transgenic Hydra lines to perform the first dynamical analysis, to our knowledge, of Hydra mouth opening and test existing hypotheses regarding the underlying cellular mechanisms. Through cell position and shape tracking, we show that mouth opening is accompanied by changes in cell shape, but not cellular rearrangements as previously suggested. Treatment with a muscle relaxant impairs mouth opening, supporting the hypothesis that mouth opening is an active process driven by radial contractile processes (myonemes) in the ectoderm. Furthermore, we find that all events exhibit the same relative rate of opening. Because one individual can open consecutively to different amounts, this suggests that the degree of mouth opening is controlled through neuronal signaling. Finally, from the opening dynamics and independent measurements of the elastic properties of the tissues, we estimate the forces exerted by the myonemes to be on the order of a few nanoNewtons. Our study provides the first dynamical framework, to our knowledge, for understanding the remarkable plasticity of the Hydra mouth and illustrates that Hydra is a powerful system for quantitative biomechanical studies of cell and tissue behaviors in vivo. PMID:26958895

  15. Dynamics of very rich open clusters

    NASA Astrophysics Data System (ADS)

    de la Fuente Marcos, R.; de la Fuente Marcos, C.

    The oldest open clusters in our Galaxy set the lower limit to the age of the Galactic Disk (9-10 Gyr). Although they appear to be very rich now, it is clear that their primordial populations were much larger. Often considered as transitional objects, these populous open clusters show structural differences with respect to globular clusters so their dynamics and characteristic evolutionary time scales can also be different. On the other hand, their large membership lead to different dynamical evolution as compared with average open clusters. In this paper, the differential features of the evolution of rich open clusters are studied using N-body simulations, including several of the largest (10^4 stars) published direct collisional N-body calculations so far, which were performed on a CRAY YMP. The disruption rate of rich open clusters is analysed in detail and the effect of the initial spatial distribution of the stars in the cluster on its dynamics is studied. The results show that cluster life-time depends on this initial distribution, decreasing when it is more concentrated. The effect of stellar evolution on the dynamical evolution of rich clusters is an important subject that also has been considered here. We demonstrate that the cluster's life-expectancy against evaporation increases because of mass loss by evolving high-mass stars.

  16. Dynamic Participation in Interdistrict Open Enrollment

    ERIC Educational Resources Information Center

    Lavery, Lesley; Carlson, Deven

    2015-01-01

    Interdistrict open enrollment is the nation's largest and most widespread school choice program, but our knowledge of these programs is limited. Drawing on 5 years of student-level data from the universe of public school attendees in Colorado, we perform a three-stage analysis to examine the dynamics of student participation in the state's…

  17. Experimental serpentinization of dunite cores at 150-200ºC and 150 bar: Importance of open system dynamics for hydrogen generation and stabilization of ferric-rich serpentine

    NASA Astrophysics Data System (ADS)

    Luhmann, A. J.; Tutolo, B. M.; Bagley, B. C.; Mildner, D. F. R.; Seyfried, W. E., Jr.

    2015-12-01

    Tectonic processes often exhume mantle peridotite to environments near the Earth's surface, where serpentinization occurs and involves the hydration of peridotite at relatively low temperatures. This process oxidizes ferrous iron in olivine, which produces hydrogen (H2), creating environments that are conducive to abiotic synthesis of organic compounds and H2-based microbial communities. To understand better chemical and physical processes associated with serpentinization, two flow-through experiments (>30 days) were conducted at 150 and 200°C and 150 bar on intact dunite cores. Permeability decreased by a factor of 31 during the 200°C experiment, more than an order of magnitude larger than that at 150°C. Furthermore, H2 and methane concentrations exceeded 600 µmol/kg and 300 µmol/kg during the 200°C experiment, and were one and two orders of magnitude higher, respectively, than the 150°C experiment. H2 was primarily generated during the conversion of olivine to ferric serpentine at 200°C, since vibrating sample magnetometer analysis indicated little to no magnetite production. Secondary mineralization was identified on the core from this experiment, but X-ray computed tomography scans indicated little change. Furthermore, (ultra) small-angle neutron scattering datasets indicated that any change in nano-porosity and surface area was smaller than the natural variability of the dunite. Even though there was little evidence of alteration, the initial stage of serpentinization at 200°C was sufficient to produce a dramatic effect on flow fields in the core. Furthermore, this experiment generated significant dissolved H2 concentrations, while simulating open system dynamics. Thus, the experimental data provide insight on mass transfer processes in open geochemical systems, which effectively prevent highly elevated H2 concentrations due to continual loss. We speculate that this process is responsible for stabilizing unusually ferric-rich serpentine in nature.

  18. Open Automated Demand Response Dynamic Pricing Technologies and Demonstration

    SciTech Connect

    Ghatikar, Girish; Mathieu, Johanna L.; Piette, Mary Ann; Koch, Ed; Hennage, Dan

    2010-08-02

    This study examines the use of OpenADR communications specification, related data models, technologies, and strategies to send dynamic prices (e.g., real time prices and peak prices) and Time of Use (TOU) rates to commercial and industrial electricity customers. OpenADR v1.0 is a Web services-based flexible, open information model that has been used in California utilities' commercial automated demand response programs since 2007. We find that data models can be used to send real time prices. These same data models can also be used to support peak pricing and TOU rates. We present a data model that can accommodate all three types of rates. For demonstration purposes, the data models were generated from California Independent System Operator's real-time wholesale market prices, and a California utility's dynamic prices and TOU rates. Customers can respond to dynamic prices by either using the actual prices, or prices can be mapped into"operation modes," which can act as inputs to control systems. We present several different methods for mapping actual prices. Some of these methods were implemented in demonstration projects. The study results demonstrate show that OpenADR allows interoperability with existing/future systems/technologies and can be used within related dynamic pricing activities within Smart Grid.

  19. Towards a Theory of Metastability in Open Quantum Dynamics

    NASA Astrophysics Data System (ADS)

    Macieszczak, Katarzyna; GuÅ£ǎ, Mǎdǎlin; Lesanovsky, Igor; Garrahan, Juan P.

    2016-06-01

    By generalizing concepts from classical stochastic dynamics, we establish the basis for a theory of metastability in Markovian open quantum systems. Partial relaxation into long-lived metastable states—distinct from the asymptotic stationary state—is a manifestation of a separation of time scales due to a splitting in the spectrum of the generator of the dynamics. We show here how to exploit this spectral structure to obtain a low dimensional approximation to the dynamics in terms of motion in a manifold of metastable states constructed from the low-lying eigenmatrices of the generator. We argue that the metastable manifold is in general composed of disjoint states, noiseless subsystems, and decoherence-free subspaces.

  20. Towards a Theory of Metastability in Open Quantum Dynamics.

    PubMed

    Macieszczak, Katarzyna; Guţă, Mădălin; Lesanovsky, Igor; Garrahan, Juan P

    2016-06-17

    By generalizing concepts from classical stochastic dynamics, we establish the basis for a theory of metastability in Markovian open quantum systems. Partial relaxation into long-lived metastable states-distinct from the asymptotic stationary state-is a manifestation of a separation of time scales due to a splitting in the spectrum of the generator of the dynamics. We show here how to exploit this spectral structure to obtain a low dimensional approximation to the dynamics in terms of motion in a manifold of metastable states constructed from the low-lying eigenmatrices of the generator. We argue that the metastable manifold is in general composed of disjoint states, noiseless subsystems, and decoherence-free subspaces. PMID:27367368

  1. Automatic Generation of Audio Content for Open Learning Resources

    ERIC Educational Resources Information Center

    Brasher, Andrew; McAndrew, Patrick

    2009-01-01

    This paper describes how digital talking books (DTBs) with embedded functionality for learners can be generated from content structured according to the OU OpenLearn schema. It includes examples showing how a software transformation developed from open source components can be used to remix OpenLearn content, and discusses issues concerning the…

  2. Osmosis-Based Pressure Generation: Dynamics and Application

    PubMed Central

    Li, Suyi; Billeh, Yazan N.; Wang, K. W.; Mayer, Michael

    2014-01-01

    This paper describes osmotically-driven pressure generation in a membrane-bound compartment while taking into account volume expansion, solute dilution, surface area to volume ratio, membrane hydraulic permeability, and changes in osmotic gradient, bulk modulus, and degree of membrane fouling. The emphasis lies on the dynamics of pressure generation; these dynamics have not previously been described in detail. Experimental results are compared to and supported by numerical simulations, which we make accessible as an open source tool. This approach reveals unintuitive results about the quantitative dependence of the speed of pressure generation on the relevant and interdependent parameters that will be encountered in most osmotically-driven pressure generators. For instance, restricting the volume expansion of a compartment allows it to generate its first 5 kPa of pressure seven times faster than without a restraint. In addition, this dynamics study shows that plants are near-ideal osmotic pressure generators, as they are composed of many small compartments with large surface area to volume ratios and strong cell wall reinforcements. Finally, we demonstrate two applications of an osmosis-based pressure generator: actuation of a soft robot and continuous volume delivery over long periods of time. Both applications do not need an external power source but rather take advantage of the energy released upon watering the pressure generators. PMID:24614529

  3. Open dynamic behaviour of financial markets

    NASA Astrophysics Data System (ADS)

    Gong, F. F.; Gong, F. X.; Gong, F. Y.

    2006-02-01

    Open dynamic behaviour of financial markets with internal interactions between agents and with external “fields” from other systems are investigated using the approach of Grossman and Stiglitz for inefficient markets, and Keynes for interference of the market using physics of finance (referred to hereafter as phynance). The simulation results indicate that the NYSE data analyzed in Plerou, V. et al., Nature 421, 130 (2003) can be fitted by an equation of order parameter Φ and local deviation R of type: -(R+0.03) Φ+ 0.6 Φ3 + 0.02 = 0, which is shown to be in remarkable agreement with Plerou's data.

  4. Electric voltage generation by antiferromagnetic dynamics

    NASA Astrophysics Data System (ADS)

    Yamane, Yuta; Ieda, Jun'ichi; Sinova, Jairo

    2016-05-01

    We theoretically demonstrate dc and ac electric voltage generation due to spin motive forces originating from domain wall motion and magnetic resonance, respectively, in two-sublattice antiferromagnets. Our theory accounts for the canting between the sublattice magnetizations, the nonadiabatic electron spin dynamics, and the Rashba spin-orbit coupling, with the intersublattice electron dynamics treated as a perturbation. This work suggests a way to observe and explore the dynamics of antiferromagnetic textures by electrical means, an important aspect in the emerging field of antiferromagnetic spintronics, where both manipulation and detection of antiferromagnets are needed.

  5. Open Source, Meet "User-Generated Science"

    ERIC Educational Resources Information Center

    Huwe, Terence K.

    2009-01-01

    This article discusses Research Blogging, a community-run nonprofit organization that is promoting a suite of blogging software to scholars. Research Blogging itself does two things. First, it extends an invitation to a community, and it is open to anyone. Second, it requires its users to follow guidelines. The combination of rigorous guidelines…

  6. Dynamics of Open DNA Sliding Clamps.

    PubMed

    Oakley, Aaron J

    2016-01-01

    A range of enzymes in DNA replication and repair bind to DNA-clamps: torus-shaped proteins that encircle double-stranded DNA and act as mobile tethers. Clamps from viruses (such as gp45 from the T4 bacteriophage) and eukaryotes (PCNAs) are homotrimers, each protomer containing two repeats of the DNA-clamp motif, while bacterial clamps (pol III β) are homodimers, each protomer containing three DNA-clamp motifs. Clamps need to be flexible enough to allow opening and loading onto primed DNA by clamp loader complexes. Equilibrium and steered molecular dynamics simulations have been used to study DNA-clamp conformation in open and closed forms. The E. coli and PCNA clamps appear to prefer closed, planar conformations. Remarkably, gp45 appears to prefer an open right-handed spiral conformation in solution, in agreement with previously reported biophysical data. The structural preferences of DNA clamps in solution have implications for understanding the duty cycle of clamp-loaders. PMID:27148748

  7. Dynamics of Open DNA Sliding Clamps

    PubMed Central

    Oakley, Aaron J.

    2016-01-01

    A range of enzymes in DNA replication and repair bind to DNA-clamps: torus-shaped proteins that encircle double-stranded DNA and act as mobile tethers. Clamps from viruses (such as gp45 from the T4 bacteriophage) and eukaryotes (PCNAs) are homotrimers, each protomer containing two repeats of the DNA-clamp motif, while bacterial clamps (pol III β) are homodimers, each protomer containing three DNA-clamp motifs. Clamps need to be flexible enough to allow opening and loading onto primed DNA by clamp loader complexes. Equilibrium and steered molecular dynamics simulations have been used to study DNA-clamp conformation in open and closed forms. The E. coli and PCNA clamps appear to prefer closed, planar conformations. Remarkably, gp45 appears to prefer an open right-handed spiral conformation in solution, in agreement with previously reported biophysical data. The structural preferences of DNA clamps in solution have implications for understanding the duty cycle of clamp-loaders. PMID:27148748

  8. Radiative decays of dynamically generated charmed baryons

    SciTech Connect

    Gamermann, D.; Jimenez-Tejero, C. E.; Ramos, A.

    2011-04-01

    In this work we study the radiative decay of dynamically generated J{sup P}=(1{sup -}/2) charm baryons into the ground state J{sup P}=(1{sup +}/2) baryons. Since different theoretical interpretations of these baryonic resonances and, in particular, of the {Lambda}{sub c}(2595), give different predictions, a precise experimental measurement of these decays would be an important step for understanding their nature.

  9. Dynamic Open Inquiry Performances of High-School Biology Students

    ERIC Educational Resources Information Center

    Zion, Michal; Sadeh, Irit

    2010-01-01

    In examining open inquiry projects among high-school biology students, we found dynamic inquiry performances expressed in two criteria: "changes occurring during inquiry" and "procedural understanding". Characterizing performances in a dynamic open inquiry project can shed light on both the procedural and epistemological scientific understanding…

  10. Dynamical Evolution of Open Star Clusters

    NASA Astrophysics Data System (ADS)

    de La Fuente Marcos, Raúl

    1998-09-01

    Stars are not formed independently, but instead they form in clusters. The influence of the initial mass function (IMF) on the evolution of open star clusters is analyzed using numerical integrations of N-body systems by the code NBODY5 (S. J. Aarseth, in Multiple Time Scales, ed. J. U. Brackbill & B. I. Cohen [New York: Academic, 1985], p. 377), which include tidal effects, mass loss due to stellar evolution, the realistic fraction of primordial binaries, and the formation of multiple systems. Five different IMFs (E. E. Salpeter, ApJ, 121, 161 [1955]; L. G. Taff, AJ, 79, 11 [1974]; G. E. Miller & J. M. Scalo, ApJS, 41, 513 [1979]; P. Kroupa, C. A. Tout, & G. Gilmore, MNRAS, 262, 545 [1993]; J. M. Scalo, Fundam. Cosmic Phys., 11, 1 [1986]) are used for generating stellar masses. The results confirm significant differences with single-mass models and allow us to distinguish between the standard power-law models and modern ones. An approximate analytic expression for the escape rate is derived in order to fit the data obtained. When stellar evolution is included, the results show that for all the IMF's studied, the evolution of the cluster is slowed down and the initial core collapse loses importance because of an expansion of the inner regions of the cluster. We find that the total disruption time is very IMF dependent because of different numbers of massive stars and also depends on the richness of the cluster. A differential behavior is found between poor and rich systems with respect to mass loss. Poor systems disrupt earlier than homologous ones without mass loss; the opposite is found for rich systems. The transition population is about N = 300. The binary escape rate seems preferentially due to close encounters in poor clusters, but it seems mainly exponential for populated clusters. It suggests that ejection is the main mechanism for binary escape in poor clusters and evaporation is the dominant one for rich clusters. The formation and evolution of

  11. Dynamical gap generation in topological insulators

    NASA Astrophysics Data System (ADS)

    Cea, Paolo

    2016-04-01

    We developed a quantum field theoretical description for the surface states of three-dimensional topological insulators. Within the relativistic quantum field theory formulation, we investigated the dynamics of low-lying surface states in an applied transverse magnetic field. We argued that, by taking into account quantum fluctuations, in three-dimensional topological insulators there is dynamical generation of a gap by a rearrangement of the Dirac sea. By comparing with available experimental data we found that our theoretical results allowed a consistent and coherent description of the Landau level spectrum of the surface low-lying excitations. Finally, we showed that the recently detected zero-Hall plateau at the charge neutral point could be accounted for by chiral edge states residing at the magnetic domain boundaries between the top and bottom surfaces of the three-dimensional topological insulator.

  12. Performance of a dynamic atmosphere generation system

    SciTech Connect

    Nano, G.; Borroni, A.; Mazza, B.

    1987-09-01

    A controlled test atmosphere system for gaseous pollutants was designed and constructed. For a reliable characterization of indoor air pollution, a suitable set of sampling and analysis procedures has to be devised and accomplished. The precision and accuracy of the measurements must be determined exactly for a correct interpretation of the results. The two main difficulties appear to be the actual generation of the individual standard and the preparations of physico-chemically thoroughly characterized mixtures. This system utilized two methods for generation of dynamic standards: permeation tubes and gas saturators. Special care also was devoted to the achievement of both a good time stability of the concentration of the standard mixtures and a satisfactory agreement between expected and measured concentration values.

  13. 33. Lower level, ballistic gas generator at left (opens launcher ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    33. Lower level, ballistic gas generator at left (opens launcher door during launch), LDB panel at right - Ellsworth Air Force Base, Delta Flight, Launch Facility, On County Road T512, south of Exit 116 off I-90, Interior, Jackson County, SD

  14. A swirl generator case study for OpenFOAM

    NASA Astrophysics Data System (ADS)

    Petit, O.; Bosioc, A. I.; Nilsson, H.; Muntean, S.; Susan-Resiga, R. F.

    2010-08-01

    This work presents numerical results, using OpenFOAM, of the flow in the swirl flow generator test rig developed at Politehnica University of Timisoara, Romania. The work shows results computed by solving the unsteady Reynolds Averaged Navier Stokes equations. The unsteady method couples the rotating and stationary parts using a sliding grid interface based on a GGI formulation. Turbulence is modeled using the standard k-epsilon model, and block structured wall function ICEM-Hexa meshes are used. The numerical results are validated against experimental LDV results, and against designed velocity profiles. The investigation shows that OpenFOAM gives results that are comparable to the experimental and designed profiles. This case study was presented at the 5th OpenFOAM Workshop, held in Gothenburg, Sweden, as a tutorial on how to treat turbomachinery applications in OpenFOAM.

  15. A platform for dynamic simulation and control of movement based on OpenSim and MATLAB.

    PubMed

    Mansouri, Misagh; Reinbolt, Jeffrey A

    2012-05-11

    Numerical simulations play an important role in solving complex engineering problems and have the potential to revolutionize medical decision making and treatment strategies. In this paper, we combine the rapid model-based design, control systems and powerful numerical method strengths of MATLAB/Simulink with the simulation and human movement dynamics strengths of OpenSim by developing a new interface between the two software tools. OpenSim is integrated with Simulink using the MATLAB S-function mechanism, and the interface is demonstrated using both open-loop and closed-loop control systems. While the open-loop system uses MATLAB/Simulink to separately reproduce the OpenSim Forward Dynamics Tool, the closed-loop system adds the unique feature of feedback control to OpenSim, which is necessary for most human movement simulations. An arm model example was successfully used in both open-loop and closed-loop cases. For the open-loop case, the simulation reproduced results from the OpenSim Forward Dynamics Tool with root mean square (RMS) differences of 0.03° for the shoulder elevation angle and 0.06° for the elbow flexion angle. MATLAB's variable step-size integrator reduced the time required to generate the forward dynamic simulation from 7.1s (OpenSim) to 2.9s (MATLAB). For the closed-loop case, a proportional-integral-derivative controller was used to successfully balance a pole on model's hand despite random force disturbances on the pole. The new interface presented here not only integrates the OpenSim and MATLAB/Simulink software tools, but also will allow neuroscientists, physiologists, biomechanists, and physical therapists to adapt and generate new solutions as treatments for musculoskeletal conditions. PMID:22464351

  16. Open Source Next Generation Visualization Software for Interplanetary Missions

    NASA Technical Reports Server (NTRS)

    Trimble, Jay; Rinker, George

    2016-01-01

    Mission control is evolving quickly, driven by the requirements of new missions, and enabled by modern computing capabilities. Distributed operations, access to data anywhere, data visualization for spacecraft analysis that spans multiple data sources, flexible reconfiguration to support multiple missions, and operator use cases, are driving the need for new capabilities. NASA's Advanced Multi-Mission Operations System (AMMOS), Ames Research Center (ARC) and the Jet Propulsion Laboratory (JPL) are collaborating to build a new generation of mission operations software for visualization, to enable mission control anywhere, on the desktop, tablet and phone. The software is built on an open source platform that is open for contributions (http://nasa.github.io/openmct).

  17. Ambit-Tautomer: An Open Source Tool for Tautomer Generation.

    PubMed

    Kochev, Nikolay T; Paskaleva, Vesselina H; Jeliazkova, Nina

    2013-06-01

    We present a new open source tool for automatic generation of all tautomeric forms of a given organic compound. Ambit-Tautomer is a part of the open source software package Ambit2. It implements three tautomer generation algorithms: combinatorial method, improved combinatorial method and incremental depth-first search algorithm. All algorithms utilize a set of fully customizable rules for tautomeric transformations. The predefined knowledge base covers 1-3, 1-5 and 1-7 proton tautomeric shifts. Some typical supported tautomerism rules are keto-enol, imin-amin, nitroso-oxime, azo-hydrazone, thioketo-thioenol, thionitroso-thiooxime, amidine-imidine, diazoamino-diazoamino, thioamide-iminothiol and nitrosamine-diazohydroxide. Ambit-Tautomer uses a simple energy based system for tautomer ranking implemented by a set of empirically derived rules. A fine-grained output control is achieved by a set of post-generation filters. We performed an exhaustive comparison of the Ambit-Tautomer Incremental algorithm against several other software packages which offer tautomer generation: ChemAxon Marvin, Molecular Networks MN.TAUTOMER, ACDLabs, CACTVS and the CDK implementation of the algorithm, based on the mobile H atoms listed in the InChI. According to the presented test results, Ambit-Tautomer's performance is either comparable to or better than the competing algorithms. Ambit-Tautomer module is available for download as a Java library, a command line application, a demo web page or OpenTox API compatible Web service. PMID:27481667

  18. The new generation of OpenGL support in ROOT

    NASA Astrophysics Data System (ADS)

    Tadel, M.

    2008-07-01

    OpenGL has been promoted to become the main 3D rendering engine of the ROOT framework. This required a major re-modularization of OpenGL support on all levels, from basic window-system specific interface to medium-level object-representation and top-level scene management. This new architecture allows seamless integration of external scene-graph libraries into the ROOT OpenGL viewer as well as inclusion of ROOT 3D scenes into external GUI and OpenGL-based 3D-rendering frameworks. Scene representation was removed from inside of the viewer, allowing scene-data to be shared among several viewers and providing for a natural implementation of multi-view canvas layouts. The object-graph traversal infrastructure allows free mixing of 3D and 2D-pad graphics and makes implementation of ROOT canvas in pure OpenGL possible. Scene-elements representing ROOT objects trigger automatic instantiation of user-provided rendering-objects based on the dictionary information and class-naming convention. Additionally, a finer, per-object control over scene-updates is available to the user, allowing overhead-free maintenance of dynamic 3D scenes and creation of complex real-time animations. User-input handling was modularized as well, making it easy to support application-specific scene navigation, selection handling and tool management.

  19. Investigating non-Markovian dynamics of quantum open systems

    NASA Astrophysics Data System (ADS)

    Chen, Yusui

    Quantum open system coupled to a non-Markovian environment has recently attracted widespread interest for its important applications in quantum information processing and quantum dissipative systems. New phenomena induced by the non-Markovian environment have been discovered in variety of research areas ranging from quantum optics, quantum decoherence to condensed matter physics. However, the study of the non-Markovian quantum open system is known a difficult problem due to its technical complexity in deriving the fundamental equation of motion and elusive conceptual issues involving non-equilibrium dynamics for a strong coupled environment. The main purpose of this thesis is to introduce several new techniques of solving the quantum open systems including a systematic approach to dealing with non-Markovian master equations from a generic quantum-state diffusion (QSD) equation. In the first part of this thesis, we briefly introduce the non-Markovian quantum-state diffusion approach, and illustrate some pronounced non-Markovian quantum effects through numerical investigation on a cavity-QED model. Then we extend the non-Markovian QSD theory to an interesting model where the environment has a hierarchical structure, and find out the exact non-Markovian QSD equation of this model system. We observe the generation of quantum entanglement due to the interplay between the non-Markovian environment and the cavity. In the second part, we show an innovative method to obtain the exact non-Markovian master equations for a set of generic quantum open systems based on the corresponding non-Markovian QSD equations. Multiple-qubit systems and multilevel systems are discussed in details as two typical examples. Particularly, we derive the exact master equation for a model consisting of a three-level atom coupled to an optical cavity and controlled by an external laser field. Additionally, we discuss in more general context the mathematical similarity between the multiple

  20. Open systems dynamics for propagating quantum fields

    NASA Astrophysics Data System (ADS)

    Baragiola, Ben Quinn

    In this dissertation, I explore interactions between matter and propagating light. The electromagnetic field is modeled as a Markovian reservoir of quantum harmonic oscillators successively streaming past a quantum system. Each weak and fleeting interaction entangles the light and the system, and the light continues its course. In the context of quantum tomography or metrology one attempts, using measure- ments of the light, to extract information about the quantum state of the system. An inevitable consequence of these measurements is a disturbance of the system's quantum state. These ideas focus on the system and regard the light as ancillary. It serves its purpose as a probe or as a mechanism to generate interesting dynamics or system states but is eventually traced out, leaving the reduced quantum state of the system as the primary mathematical subject. What, then, when the state of light itself harbors intrinsic self-entanglement? One such set of states, those where a traveling wave packet is prepared with a defi- nite number of photons, is a focal point of this dissertation. These N-photon states are ideal candidates as couriers in quantum information processing device. In con- trast to quasi-classical states, such as coherent or thermal fields, N-photon states possess temporal mode entanglement, and local interactions in time have nonlocal consequences. The reduced state of a system probed by an N-photon state evolves in a non-Markovian way, and to describe its dynamics one is obliged to keep track of the field's evolution. I present a method to do this for an arbitrary quantum system using a set of coupled master equations. Many models set aside spatial degrees of freedom as an unnecessary complicating factor. By doing so the precision of predictions is limited. Consider a ensemble of cold, trapped atomic spins dispersively probed by a paraxial laser beam. Atom-light coupling across the ensemble is spatially inhomogeneous as is the radiation pattern of

  1. Disk magnetocumulative generator with an explosive opening switch

    NASA Astrophysics Data System (ADS)

    Demidov, V. A.; Boriskin, A. S.; Kazakov, S. A.; Tatsenko, O. M.; Vlasov, Yu. V.; Shapovalov, E. V.; Romanov, A. P.; Filippov, A. V.; Golosov, S. N.; Moiseenko, A. N.; Schetnikov, E. I.; Yanenko, V. A.; Kutumov, S. V.; Kazakova, N. R.; Volodchenkov, S. I.; Grushko, V. V.; Nikolaev, N. I.; Yusupov, R. R.; Galanova, S. V.; Sevastyanov, A. S.; Kostin, V. V.; Pikar', A. S.; Korolev, P. V.; Kruchinin, V. A.; Parfenov, A. D.; Toropova, T. A.

    2015-01-01

    This paper presents the results of tests of a facility based on a ten-element disk magnetocumulative generator and an explosive opening switch. A current of 10 MA with a characteristic rise time of ≈0.5 µs was obtained by breaking a circuit with a current of 18 MA in a load with an inductance of 16 nH, which is equivalent to the inductance of the chamber with a multiwire liner.

  2. Dynamical generation of the top quark mass

    NASA Astrophysics Data System (ADS)

    Popovic, Marko Berislav

    2002-09-01

    I study new physics theories in which the observed mass of the heaviest elementary particle, the top quark, is a result of a dynamical mechanism at the subatomic level. The same mechanism needs to explain the transition of the effective physical description at the largest space-time scales to that at smaller scales. This large-scale description is characterized by non-zero masses for most of the elementary particles and the existence of the familiar electromagnetic interactions. The description at smaller space-time scales is characterized by the presence of a richer set of fundamental interactions, including weak and hypercharge interactions, as well as no masses for the particles. As a minimal consequence of this transition, particle theories commonly predict the existence of a still unobserved particle, called the Higgs, at the largest scales. New physics considered in this thesis includes the following: (1) Models with new fundamental interactions that select the top quark and give an exclusive role to its dynamical mass generation mechanism. I propose one such model, discuss current experimental constraints, and suggest future tests of this idea. (2) Models with new spin one-half particles, not sensitive to the weak interactions, that mix with ordinary particles, including the top quark. I discuss the phenomenology, i.e., analyze data from particle colliders, and set limits on the parameters of the models. (3) Models with new spin one-half particles, sensitive to the weak interactions, that mix with ordinary particles. I propose the model structure, discuss some of its phenomenology, and suggest further tests of this idea at linear particle accelerators. Finally, I analyze the connection between the Higgs mass (m H) and the space-time scale at which the above-mentioned transition occurs. Without introducing new physics at the smallest scales, I show that due to the very large top mass, the standard description with the Higgs particle fails at small scales

  3. Digital computer program for generating dynamic turbofan engine models (DIGTEM)

    NASA Technical Reports Server (NTRS)

    Daniele, C. J.; Krosel, S. M.; Szuch, J. R.; Westerkamp, E. J.

    1983-01-01

    This report describes DIGTEM, a digital computer program that simulates two spool, two-stream turbofan engines. The turbofan engine model in DIGTEM contains steady-state performance maps for all of the components and has control volumes where continuity and energy balances are maintained. Rotor dynamics and duct momentum dynamics are also included. Altogether there are 16 state variables and state equations. DIGTEM features a backward-differnce integration scheme for integrating stiff systems. It trims the model equations to match a prescribed design point by calculating correction coefficients that balance out the dynamic equations. It uses the same coefficients at off-design points and iterates to a balanced engine condition. Transients can also be run. They are generated by defining controls as a function of time (open-loop control) in a user-written subroutine (TMRSP). DIGTEM has run on the IBM 370/3033 computer using implicit integration with time steps ranging from 1.0 msec to 1.0 sec. DIGTEM is generalized in the aerothermodynamic treatment of components.

  4. Intrinsic and dynamically generated scalar meson states

    NASA Astrophysics Data System (ADS)

    Shakin, C. M.; Wang, Huangsheng

    2001-01-01

    Recent work by Maltman has given us confidence that our assignment of scalar meson states to various nonets based upon our generalized Nambu-Jona-Lasinio (NJL) model is correct. [For example, in our model the a0(980) and the f0(980) are in the same nonet as the K*0(1430).] In this work we make use of our model to provide a precise definition of ``preexisting'' resonances and ``dynamically generated'' resonances when considering various scalar mesons. [This distinction has been noted by Meissner in his characterization of the f0(400-1200) as nonpreexisting.] We define preexisting (or intrinsic) resonances as those that appear as singularities of the qq¯ T matrix and are in correspondence with qq¯ states bound in the confining field. [Additional singularities may be found when studying the T matrices describing π-π or π-K scattering, for example. Such features may be seen to arise, in part, from t-channel and u-channel ρ exchange in the case of π-π scattering, leading to the introduction of the σ(500-600). In addition, threshold effects in the qq¯ T matrix can give rise to significant broad cross section enhancements. The latter is, in part, responsible for the introduction of the κ(900) in a study of π-K scattering, for example.] We suggest that it is only the intrinsic resonances which correspond to qq¯ quark-model states, and it is only the intrinsic states that are to be used to form quark-model qq¯ nonets of states. [While the κ(900) and σ(500-600) could be placed in a nonet of dynamically generated states, it is unclear whether there is evidence that requires the introduction of other members of such a nonet.] In this work we show how the phenomena related to the introduction of the σ(500-600) and the κ(900) are generated in studies of π-π and π-K scattering, making use of our generalized Nambu-Jona-Lasinio model. We also calculate the decay constants for the a0 and K*0 mesons and compare our results with those obtained by Maltman. We find

  5. Open science: Investigating precipitation cycles in dynamically downscaled data using openly available radar data and open source software

    NASA Astrophysics Data System (ADS)

    Collis, Scott; helmus, Jonathan; Kotamarthi, Rao; Wang, Jiali; Feng, Yan; Ghate, Virendra

    2016-04-01

    In order to assess infrastructure resilience to climate change in urban centers, climate model output is needed at spatial resolutions required for urban planning. This is most commonly achieved using either empirical or dynamic downscaling at present. The utility of these downscaling methods for assessments depends on having estimates of biases in the models estimate climate variables and their extremes, surface temperature and precipitation as an example, developed using historical data sets. Since precipitation is a multi-scale stochastic process direct comparison with observations is challenging and even modern data sets work at scales too coarse to capture extreme events. Gauge data requires a direct hit by a storm to see the highest rain rates, often leading to an underestimation in the 1-100 year rainfall. This is exacerbated by phenomena such as training that can cause very high gradients in accumulation. This presentation details a long-term (multi-year) study of precipitation derived from open data from the NOAA Next-Generation Radar (NEXRAD) network. Two locations are studied; Portland, Maine, location for a pilot study conducted by the US Department of Homeland Security's on regional resilience to climate change and the Southern Great Plains of Oklahoma, home to the Department of Energy's ARM program. Both are located within 40km of a NEXRAD radar allowing retrievals of rainfall rates on the order of one kilometer using the Python-ARM Radar Toolkit (Py-ART). Both the diurnal and season cycle of precipitation is studied and compared to WRF dynamically downscaled precipitation rates. This project makes heavy use of open source community tools such as project Jupyter and the Scientific Python ecosystem to manage and process 10's of TB of data on midrange cluster infrastructure. Both the meteorological aspects and the data infrastructure and architecture will be discussed.

  6. Quantum-gravity induced Lorentz violation and dynamical mass generation

    SciTech Connect

    Mavromatos, Nick E.

    2011-01-15

    In the eprint by Jean Alexandre [arXiv:1009.5834], a minimal extension of (3+1)-dimensional quantum electrodynamics has been proposed, which includes Lorentz violation (LV) in the form of higher-(spatial)-derivative isotropic terms in the gauge sector, suppressed by a mass scale M. The model can lead to dynamical mass generation for charged fermions. In this article, I elaborate further on this idea and I attempt to connect it to specific quantum-gravity models, inspired from string/brane theory. Specifically, in the first part of the article, I comment briefly on the gauge dependence of the dynamical mass generation in the approximations of J. Alexandre [arXiv:1009.5834.], and I propose a possible avenue for obtaining the true gauge-parameter-independent value of the mass by means of pinch technique argumentations. In the second part of the work, I embed the LV QED model into multibrane world scenarios with a view to provide a geometrical way of enhancing the dynamical mass to phenomenologically realistic values by means of bulk warp metric factors, in an (inverse) Randall-Sundrum hierarchy. Finally, in the third part of this paper, I demonstrate that such Lorentz-violating QED models may represent parts of a low-energy effective action (of Finsler-Born-Infeld type) of open strings propagating in quantum D0-particle stochastic space-time foam backgrounds, which are viewed as consistent quantum-gravity configurations. To capture correctly the quantum-fluctuating nature of the foam background, I replace the D0-recoil-velocity parts of this action by appropriate gradient operators in three-space, keeping the photon field part intact. This is consistent with the summation over world-sheet genera in the first-quantized string approach. I identify a class of quantum orderings which leads to the LV QED action of J. Alexandre, arXiv:1009.5834. In this way I argue, following the logic in that work, that the D-foam can lead to dynamically generated masses for charged

  7. Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data

    PubMed Central

    Kyoda, Koji; Tohsato, Yukako; Ho, Kenneth H. L.; Onami, Shuichi

    2015-01-01

    Motivation: Recent progress in live-cell imaging and modeling techniques has resulted in generation of a large amount of quantitative data (from experimental measurements and computer simulations) on spatiotemporal dynamics of biological objects such as molecules, cells and organisms. Although many research groups have independently dedicated their efforts to developing software tools for visualizing and analyzing these data, these tools are often not compatible with each other because of different data formats. Results: We developed an open unified format, Biological Dynamics Markup Language (BDML; current version: 0.2), which provides a basic framework for representing quantitative biological dynamics data for objects ranging from molecules to cells to organisms. BDML is based on Extensible Markup Language (XML). Its advantages are machine and human readability and extensibility. BDML will improve the efficiency of development and evaluation of software tools for data visualization and analysis. Availability and implementation: A specification and a schema file for BDML are freely available online at http://ssbd.qbic.riken.jp/bdml/. Contact: sonami@riken.jp Supplementary Information: Supplementary data are available at Bioinformatics online. PMID:25414366

  8. Glucans monomer-exchange dynamics as an open chemical network

    NASA Astrophysics Data System (ADS)

    Rao, Riccardo; Lacoste, David; Esposito, Massimiliano

    2015-12-01

    We describe the oligosaccharides-exchange dynamics performed by the so-called D-enzymes on polysaccharides. To mimic physiological conditions, we treat this process as an open chemical network by assuming some of the polymer concentrations fixed (chemostatting). We show that three different long-time behaviors may ensue: equilibrium states, nonequilibrium steady states, and continuous growth states. We dynamically and thermodynamically characterize these states and emphasize the crucial role of conservation laws in identifying the chemostatting conditions inducing them.

  9. Dynamics of open bosonic quantum systems in coherent state representation

    SciTech Connect

    Dalvit, D. A. R.; Berman, G. P.; Vishik, M.

    2006-01-15

    We consider the problem of decoherence and relaxation of open bosonic quantum systems from a perspective alternative to the standard master equation or quantum trajectories approaches. Our method is based on the dynamics of expectation values of observables evaluated in a coherent state representation. We examine a model of a quantum nonlinear oscillator with a density-density interaction with a collection of environmental oscillators at finite temperature. We derive the exact solution for dynamics of observables and demonstrate a consistent perturbation approach.

  10. Dynamics of an Open System for Repeated Harmonic Perturbation

    NASA Astrophysics Data System (ADS)

    Tamura, Hiroshi; Zagrebnov, Valentin A.

    2016-05-01

    We use the Kossakowski-Lindblad-Davies formalism to study an open dynamical system defined as Markovian extension of the one-mode quantum resonator S, perturbed by repeated harmonic interaction with a chain of multi-level harmonic atoms C. The long-time asymptotic behaviour and correlations of various subsystems of the system S + C are treated in the framework of the W^*-dynamical system approach.

  11. Glucans monomer-exchange dynamics as an open chemical network

    SciTech Connect

    Rao, Riccardo Esposito, Massimiliano; Lacoste, David

    2015-12-28

    We describe the oligosaccharides-exchange dynamics performed by the so-called D-enzymes on polysaccharides. To mimic physiological conditions, we treat this process as an open chemical network by assuming some of the polymer concentrations fixed (chemostatting). We show that three different long-time behaviors may ensue: equilibrium states, nonequilibrium steady states, and continuous growth states. We dynamically and thermodynamically characterize these states and emphasize the crucial role of conservation laws in identifying the chemostatting conditions inducing them.

  12. Coarse grained open system quantum dynamics

    SciTech Connect

    Thanopulos, Ioannis; Brumer, Paul; Shapiro, Moshe

    2008-11-21

    We show that the quantum dynamics of a system comprised of a subspace Q coupled to a larger subspace P can be recast as a reduced set of 'coarse grained' ordinary differential equations with constant coefficients. These equations can be solved by a single diagonalization of a general complex matrix. The method makes no assumptions about the strength of the couplings between the Q and the P subspaces, nor is there any limitation on the initial population in P. The utility of the method is demonstrated via computations in three following areas: molecular compounds, photonic materials, and condensed phases.

  13. Generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB

    PubMed Central

    Lee, Leng-Feng

    2016-01-01

    Computer modeling, simulation and optimization are powerful tools that have seen increased use in biomechanics research. Dynamic optimizations can be categorized as either data-tracking or predictive problems. The data-tracking approach has been used extensively to address human movement problems of clinical relevance. The predictive approach also holds great promise, but has seen limited use in clinical applications. Enhanced software tools would facilitate the application of predictive musculoskeletal simulations to clinically-relevant research. The open-source software OpenSim provides tools for generating tracking simulations but not predictive simulations. However, OpenSim includes an extensive application programming interface that permits extending its capabilities with scripting languages such as MATLAB. In the work presented here, we combine the computational tools provided by MATLAB with the musculoskeletal modeling capabilities of OpenSim to create a framework for generating predictive simulations of musculoskeletal movement based on direct collocation optimal control techniques. In many cases, the direct collocation approach can be used to solve optimal control problems considerably faster than traditional shooting methods. Cyclical and discrete movement problems were solved using a simple 1 degree of freedom musculoskeletal model and a model of the human lower limb, respectively. The problems could be solved in reasonable amounts of time (several seconds to 1–2 hours) using the open-source IPOPT solver. The problems could also be solved using the fmincon solver that is included with MATLAB, but the computation times were excessively long for all but the smallest of problems. The performance advantage for IPOPT was derived primarily by exploiting sparsity in the constraints Jacobian. The framework presented here provides a powerful and flexible approach for generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB

  14. Generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB.

    PubMed

    Lee, Leng-Feng; Umberger, Brian R

    2016-01-01

    Computer modeling, simulation and optimization are powerful tools that have seen increased use in biomechanics research. Dynamic optimizations can be categorized as either data-tracking or predictive problems. The data-tracking approach has been used extensively to address human movement problems of clinical relevance. The predictive approach also holds great promise, but has seen limited use in clinical applications. Enhanced software tools would facilitate the application of predictive musculoskeletal simulations to clinically-relevant research. The open-source software OpenSim provides tools for generating tracking simulations but not predictive simulations. However, OpenSim includes an extensive application programming interface that permits extending its capabilities with scripting languages such as MATLAB. In the work presented here, we combine the computational tools provided by MATLAB with the musculoskeletal modeling capabilities of OpenSim to create a framework for generating predictive simulations of musculoskeletal movement based on direct collocation optimal control techniques. In many cases, the direct collocation approach can be used to solve optimal control problems considerably faster than traditional shooting methods. Cyclical and discrete movement problems were solved using a simple 1 degree of freedom musculoskeletal model and a model of the human lower limb, respectively. The problems could be solved in reasonable amounts of time (several seconds to 1-2 hours) using the open-source IPOPT solver. The problems could also be solved using the fmincon solver that is included with MATLAB, but the computation times were excessively long for all but the smallest of problems. The performance advantage for IPOPT was derived primarily by exploiting sparsity in the constraints Jacobian. The framework presented here provides a powerful and flexible approach for generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB. This

  15. Relativistic Quantum Metrology in Open System Dynamics

    PubMed Central

    Tian, Zehua; Wang, Jieci; Fan, Heng; Jing, Jiliang

    2015-01-01

    Quantum metrology studies the ultimate limit of precision in estimating a physical quantity if quantum strategies are exploited. Here we investigate the evolution of a two-level atom as a detector which interacts with a massless scalar field using the master equation approach for open quantum system. We employ local quantum estimation theory to estimate the Unruh temperature when probed by a uniformly accelerated detector in the Minkowski vacuum. In particular, we evaluate the Fisher information (FI) for population measurement, maximize its value over all possible detector preparations and evolution times, and compare its behavior with that of the quantum Fisher information (QFI). We find that the optimal precision of estimation is achieved when the detector evolves for a long enough time. Furthermore, we find that in this case the FI for population measurement is independent of initial preparations of the detector and is exactly equal to the QFI, which means that population measurement is optimal. This result demonstrates that the achievement of the ultimate bound of precision imposed by quantum mechanics is possible. Finally, we note that the same configuration is also available to the maximum of the QFI itself. PMID:25609187

  16. Properties of earthquakes generated by fault dynamics

    NASA Technical Reports Server (NTRS)

    Carlson, J. M.; Langer, J. S.

    1989-01-01

    A model for fault dynamics consisting of a uniform chain of blocks and springs pulled slowly across a rough surface is presented. The only nonlinear element of the model is a slip-stick friction force between the blocks and the surface. It is found that this model gives rise to events of all sizes. The numerical evaluation of the distribution of earthquake magnitudes results in a power-law spectrum similar to what is observed in nature. Like certain other dissipative dynamical systems, the observed large fluctuations in earthquake magnitude persist because the system is in a state of marginal stability.

  17. Dynamical and thermodynamical control of Open Quantum Walks

    NASA Astrophysics Data System (ADS)

    Petruccione, Francesco; Sinayskiy, Ilya

    2014-03-01

    Over the last few years dynamical properties and limit distributions of Open Quantum Walks (OQWs), quantum walks driven by dissipation, have been intensely studied [S. Attal et. al. J. Stat. Phys. 147, Issue 4, 832 (2012)]. For some particular cases of OQWs central limit theorems have been proven [S. Attal, N. Guillotin, C. Sabot, ``Central Limit Theorems for Open Quantum Random Walks,'' to appear in Annales Henri Poincaré]. However, only recently the connection between the rich dynamical behavior of OQWs and the corresponding microscopic system-environment models has been established. The microscopic derivation of an OQW as a reduced system dynamics on a 2-nodes graph [I. Sinayskiy, F. Petruccione, Open Syst. Inf. Dyn. 20, 1340007 (2013)] and its generalization to arbitrary graphs allow to explain the dependance of the dynamical behavior of the OQW on the temperature and coupling to the environment. For thermal environments we observe Gaussian behaviour, whereas at zero temperature population trapping and ``soliton''-like behaviour are possible. Physical realizations of OQWs in quantum optical setups will be also presented. This work is based on research supported by the South African Research Chair Initiative of the Department of Science and Technology and National Research Foundation.

  18. Dynamics and stability of wind turbine generators

    NASA Technical Reports Server (NTRS)

    Hinrichsen, E. N.; Nolan, P. J.

    1981-01-01

    Synchronous and induction generators are considered. A comparison is made between wind turbines, steam, and hydro units. The unusual phenomena associated with wind turbines are emphasized. The general control requirements are discussed, as well as various schemes for torsional damping such as speed sensitive stabilizer and blade pitch control. Integration between adjacent wind turbines in a wind farm is also considered.

  19. Automation Framework for Flight Dynamics Products Generation

    NASA Technical Reports Server (NTRS)

    Wiegand, Robert E.; Esposito, Timothy C.; Watson, John S.; Jun, Linda; Shoan, Wendy; Matusow, Carla

    2010-01-01

    XFDS provides an easily adaptable automation platform. To date it has been used to support flight dynamics operations. It coordinates the execution of other applications such as Satellite TookKit, FreeFlyer, MATLAB, and Perl code. It provides a mechanism for passing messages among a collection of XFDS processes, and allows sending and receiving of GMSEC messages. A unified and consistent graphical user interface (GUI) is used for the various tools. Its automation configuration is stored in text files, and can be edited either directly or using the GUI.

  20. Glucans monomer-exchange dynamics as an open chemical network.

    PubMed

    Rao, Riccardo; Lacoste, David; Esposito, Massimiliano

    2015-12-28

    We describe the oligosaccharides-exchange dynamics performed by the so-called D-enzymes on polysaccharides. To mimic physiological conditions, we treat this process as an open chemical network by assuming some of the polymer concentrations fixed (chemostatting). We show that three different long-time behaviors may ensue: equilibrium states, nonequilibrium steady states, and continuous growth states. We dynamically and thermodynamically characterize these states and emphasize the crucial role of conservation laws in identifying the chemostatting conditions inducing them. PMID:26723707

  1. Dynamical and thermodynamical control of open quantum Brownian motion

    NASA Astrophysics Data System (ADS)

    Petruccione, Francesco; Sinayskiy, Ilya

    Open quantum Brownian motion was introduced as a new type of quantum Brownian motion for Brownian particles with internal quantum degrees of freedom. Recently, an example of the microscopic derivation of open quantum Brownian motion has been presented [I. Sinayskiy and F. Petruccione, Phys. Scr. T165, 014017 (2015)]. The microscopic derivation allows to relate the dynamical properties of open Quantum Brownian motion and the thermodynamical properties of the environment. In the present work, we study the possibility of control of the external degrees of freedom of the ''walker'' (position) by manipulating the internal one, e.g. spin, polarization, occupation numbers. In the particular example of the known microscopic derivation the connection between dynamics of the ''walker'' and thermodynamical parameters of the system is established. For the system of open Brownian walkers coupled to the same environment controllable creation of quantum correlations is investigated. This work is based upon research supported by the South African Research Chair Initiative of the Department of Science and Technology and National Research Foundation.

  2. Dynamical gauge effects in an open quantum network

    NASA Astrophysics Data System (ADS)

    Zhao, Jianshi; Price, Craig; Liu, Qi; Gemelke, Nathan

    2016-05-01

    We describe new experimental techniques for simulation of high-energy field theories based on an analogy between open thermodynamic systems and effective dynamical gauge-fields following SU(2) × U(1) Yang-Mills models. By coupling near-resonant laser-modes to atoms moving in a disordered optical environment, we create an open system which exhibits a non-equilibrium phase transition between two steady-state behaviors, exhibiting scale-invariant behavior near the transition. By measuring transport of atoms through the disordered network, we observe two distinct scaling behaviors, corresponding to the classical and quantum limits for the dynamical gauge field. This behavior is loosely analogous to dynamical gauge effects in quantum chromodynamics, and can mapped onto generalized open problems in theoretical understanding of quantized non-Abelian gauge theories. Additional, the scaling behavior can be understood from the geometric structure of the gauge potential and linked to the measure of information in the local disordered potential, reflecting an underlying holographic principle. We acknowledge support from NSF Award No.1068570, and the Charles E. Kaufman Foundation.

  3. Can Generating Representations Enhance Learning with Dynamic Visualizations?

    ERIC Educational Resources Information Center

    Zhang, Zhihui Helen; Linn, Marcia C.

    2011-01-01

    This study explores the impact of asking middle school students to generate drawings of their ideas about chemical reactions on integrated understanding. Students explored atomic interactions during hydrogen combustion using a dynamic visualization. The generation group drew their ideas about how the reaction takes place at the molecular level.…

  4. Fluid dynamic aspects of jet noise generation

    NASA Technical Reports Server (NTRS)

    1974-01-01

    The location of the noise sources within jet flows, their relative importance to the overall radiated field, and the mechanisms by which noise generation occurs, are studied by detailed measurements of the level and spectral composition of the radiated sound in the far field. Directional microphones are used to isolate the contribution to the radiated sound of small regions of the flow, and for cross-correlation between the radiated acoustic field and either the velocity fluctuations or the pressure fluctuations in the source field. Acquired data demonstrate the supersonic convection of the acoustic field and the resulting limited upstream influence of the signal source, as well as a possible increase of signal strength as it propagates toward the centerline of the flow.

  5. Generating functionals for autonomous latching dynamics in attractor relict networks

    PubMed Central

    Linkerhand, Mathias; Gros, Claudius

    2013-01-01

    Coupling local, slowly adapting variables to an attractor network allows to destabilize all attractors, turning them into attractor ruins. The resulting attractor relict network may show ongoing autonomous latching dynamics. We propose to use two generating functionals for the construction of attractor relict networks, a Hopfield energy functional generating a neural attractor network and a functional based on information-theoretical principles, encoding the information content of the neural firing statistics, which induces latching transition from one transiently stable attractor ruin to the next. We investigate the influence of stress, in terms of conflicting optimization targets, on the resulting dynamics. Objective function stress is absent when the target level for the mean of neural activities is identical for the two generating functionals and the resulting latching dynamics is then found to be regular. Objective function stress is present when the respective target activity levels differ, inducing intermittent bursting latching dynamics. PMID:23784373

  6. Dynamics of Micro-Plasmas Generated in Noble Gases by Strong-Field Laser Pulses

    NASA Astrophysics Data System (ADS)

    Romanov, Dmitri A.; Compton, Ryan; Filin, Alex; Levis, Robert J.

    2010-03-01

    The ultrafast dynamics of micro-plasmas generated by an ˜80 fs laser pulse in noble gases has been investigated using four-wave mixing (FWM). The evolution patterns of the FWM signal are indicative of the gas species and ambient conditions. The signal is observed to reach higher intensity levels faster for Xe, with progressively lower scattering intensity and longer time dynamics for the noble gas series Xe, Kr, Ar, Ne, and He. The theoretical model for interpreting this temporal dynamics is based on initial tunnel ionization followed by electron impact ionization cooling. The model reproduces well the measured degree of ionization in atmospheric-pressure laser-induced plasmas and predicts quantitatively the intensity of four-wave mixing as a function of time for the series of five noble gases. The model also predicts the dynamics as a function of pump laser intensity and gas pressure. The findings open the way for effective control of micro-plasma dynamics.

  7. Dynamic properties of high structural integrity auxetic open cell foam

    NASA Astrophysics Data System (ADS)

    Scarpa, F.; Ciffo, L. G.; Yates, J. R.

    2004-02-01

    This paper illustrates various dynamic characteristics of open cell compliant polyurethane foam with auxetic (negative Poisson's ratio) behaviour. The foam is obtained from off-the-shelf open cell polyurethane grey foam with a manufacturing process based on mechanical deformation on a mould in a temperature-controlled oven. The Poisson's ratio is measured with an image processing technique based on edge detection with wavelet methods. Foam samples have been tested in a viscoelastic analyser tensile test machine to determine the Young's modulus and loss factor for small dynamic strains. The same samples have also been tested in an acoustic impedance tube to measure acoustic absorption and specific acoustic resistance and reactance with a transmissibility technique. Another set of tests has been set up on a cam plastometer machine for constant strain rate dynamic crushing analysis. All the tests have been carried out on auxetic and normal foam samples to provide a comparison between the two types of cellular solids. The results from the experimental tests are discussed and interpreted using microstructure models for cellular materials existing in the literature. The negative Poisson's ratio foam presented in this paper shows an overall superiority regarding damping and acoustic properties compared to the original conventional foam. Its dynamic crushing performance is also significantly superior to the normal foam, suggesting a possible use in structural integrity compliant elements.

  8. Open boundary molecular dynamics of sheared star-polymer melts.

    PubMed

    Sablić, Jurij; Praprotnik, Matej; Delgado-Buscalioni, Rafael

    2016-02-28

    Open boundary molecular dynamics (OBMD) simulations of a sheared star polymer melt under isothermal conditions are performed to study the rheology and molecular structure of the melt under a fixed normal load. Comparison is made with the standard molecular dynamics (MD) in periodic (closed) boxes at a fixed shear rate (using the SLLOD dynamics). The OBMD system exchanges mass and momentum with adjacent reservoirs (buffers) where the external pressure tensor is imposed. Insertion of molecules in the buffers is made feasible by implementing there a low resolution model (blob-molecules with soft effective interactions) and then using the adaptive resolution scheme (AdResS) to connect with the bulk MD. Straining with increasing shear stress induces melt expansion and a significantly different redistribution of pressure compared with the closed case. In the open sample, the shear viscosity is also a bit lowered but more stable against the viscous heating. At a given Weissenberg number, molecular deformations and material properties (recoverable shear strain and normal stress ratio) are found to be similar in both setups. We also study the modelling effect of normal and tangential friction between monomers implemented in a dissipative particle dynamics (DPD) thermostat. Interestingly, the tangential friction substantially enhances the elastic response of the melt due to a reduction of the kinetic stress viscous contribution. PMID:26820315

  9. Dynamical mass generation in QED with weak magnetic fields

    SciTech Connect

    Ayala, A.; Rojas, E.; Bashir, A.; Raya, A.

    2006-09-25

    We study the dynamical generation of masses for fundamental fermions in quenched quantum electrodynamics in the presence of magnetic fields using Schwinger-Dyson equations. We show that, contrary to the case where the magnetic field is strong, in the weak field limit eB << m(0)2, where m(0) is the value of the dynamically generated mass in the absence of the magnetic field, masses are generated above a critical value of the coupling and that this value is the same as in the case with no magnetic field. We carry out a numerical analysis to study the magnetic field dependence of the mass function above critical coupling and show that in this regime the dynamically generated mass and the chiral condensate for the lowest Landau level increase proportionally to (eB)2.

  10. Modeling community population dynamics with the open-source language R.

    PubMed

    Green, Robin; Shou, Wenying

    2014-01-01

    The ability to explain biological phenomena with mathematics and to generate predictions from mathematical models is critical for understanding and controlling natural systems. Concurrently, the rise in open-source software has greatly increased the ease at which researchers can implement their own mathematical models. With a reasonably sound understanding of mathematics and programming skills, a researcher can quickly and easily use such tools for their own work. The purpose of this chapter is to expose the reader to one such tool, the open-source programming language R, and to demonstrate its practical application to studying population dynamics. We use the Lotka-Volterra predator-prey dynamics as an example. PMID:24838889

  11. OpenSim: open-source software to create and analyze dynamic simulations of movement.

    PubMed

    Delp, Scott L; Anderson, Frank C; Arnold, Allison S; Loan, Peter; Habib, Ayman; John, Chand T; Guendelman, Eran; Thelen, Darryl G

    2007-11-01

    Dynamic simulations of movement allow one to study neuromuscular coordination, analyze athletic performance, and estimate internal loading of the musculoskeletal system. Simulations can also be used to identify the sources of pathological movement and establish a scientific basis for treatment planning. We have developed a freely available, open-source software system (OpenSim) that lets users develop models of musculoskeletal structures and create dynamic simulations of a wide variety of movements. We are using this system to simulate the dynamics of individuals with pathological gait and to explore the biomechanical effects of treatments. OpenSim provides a platform on which the biomechanics community can build a library of simulations that can be exchanged, tested, analyzed, and improved through a multi-institutional collaboration. Developing software that enables a concerted effort from many investigators poses technical and sociological challenges. Meeting those challenges will accelerate the discovery of principles that govern movement control and improve treatments for individuals with movement pathologies. PMID:18018689

  12. Integrating extended MHD and kinetic physics into the next-generation OpenGGCM

    NASA Astrophysics Data System (ADS)

    Germaschewski, K.; Wang, L.; Maynard, K. R. M.; Raeder, J.

    2015-12-01

    Going beyond one-fluid MHD is crucial to properly model the ion- and electron-scale reconnection physics in collisionless plasmas, as present in Earth's geospace environment. This presentation introduces the next-generation OpenGGCM, based on J.~Raeder's well-known global magnetospheric model. OpenGGCM has been modularized using the libMRC framework, so that components can easily be exchanged. For example, the MHD solver can be replaced by using a coupled version of the multi-fluid moment code Gkeyll, that handles multiple species and integrates kinetic effects, e.g., a full pressure tensor. We have also added the option to couple OpenGGCM to the widely used ATHENA code. Similarly, there are options for inner magnetosphere and ionosphere models. Mesh refinement is available in the new version, enabling the use of a computational grid that puts very high resolution at the reconnection current sheets at the dayside magnetopause and in the magnetotail while saving computational effort using a coarser resolution in regions that have no small-scale dynamics. Mesh refinement is implemented as a number of sparse-matrix multiplications to fill ghost cells, and to correct fluxes and electric fields. It supports exact flux conservation for the cell-centered fluid quantities and the staggered Yee grid for the electromagnetic fields, maintaining the magnetic field divergence-free to machine precision. We will present computational tests and show applications of the next-generation OpenGGCM to simulations of reconnection at Ganymede and at Earth's dayside magnetopause.

  13. Portable dynamic pressure generator for static and dynamic calibration of in situ pressure transducers

    NASA Technical Reports Server (NTRS)

    Bolt, P. A.; Hess, R. W.; Davis, W. T.

    1983-01-01

    A portable dynamic pressure generator was developed to meet the requirements of determining the dynamic sensitivities of in situ pressure transducers at low frequencies. The device is designed to operate in a frequency range of 0 to 100 Hz, although it was only tested up to 30 Hz, and to generate dynamic pressures up to 13.8 kPa (2 psi). A description of the operating characteristics and instrumentation used for pressure, frequency, and displacement measurements is given. The pressure generator was used to statically and dynamically calibrate transducers. Test results demonstrated that a difference an exist between the static and dynamic sensitivity of a transducer, confirming the need for dynamic calibrations of in situ pressure transducers.

  14. Generation of a Multicomponent Library of Disulfide Donor-Acceptor Architectures Using Dynamic Combinatorial Chemistry

    PubMed Central

    Drożdż, Wojciech; Kołodziejski, Michał; Markiewicz, Grzegorz; Jenczak, Anna; Stefankiewicz, Artur R.

    2015-01-01

    We describe here the generation of new donor-acceptor disulfide architectures obtained in aqueous solution at physiological pH. The application of a dynamic combinatorial chemistry approach allowed us to generate a large number of new disulfide macrocyclic architectures together with a new type of [2]catenanes consisting of four distinct components. Up to fifteen types of structurally-distinct dynamic architectures have been generated through one-pot disulfide exchange reactions between four thiol-functionalized aqueous components. The distribution of disulfide products formed was found to be strongly dependent on the structural features of the thiol components employed. This work not only constitutes a success in the synthesis of topologically- and morphologically-complex targets, but it may also open new horizons for the use of this methodology in the construction of molecular machines. PMID:26193265

  15. Dynamic Loads Generation for Multi-Point Vibration Excitation Problems

    NASA Technical Reports Server (NTRS)

    Shen, Lawrence

    2011-01-01

    A random-force method has been developed to predict dynamic loads produced by rocket-engine random vibrations for new rocket-engine designs. The method develops random forces at multiple excitation points based on random vibration environments scaled from accelerometer data obtained during hot-fire tests of existing rocket engines. This random-force method applies random forces to the model and creates expected dynamic response in a manner that simulates the way the operating engine applies self-generated random vibration forces (random pressure acting on an area) with the resulting responses that we measure with accelerometers. This innovation includes the methodology (implementation sequence), the computer code, two methods to generate the random-force vibration spectra, and two methods to reduce some of the inherent conservatism in the dynamic loads. This methodology would be implemented to generate the random-force spectra at excitation nodes without requiring the use of artificial boundary conditions in a finite element model. More accurate random dynamic loads than those predicted by current industry methods can then be generated using the random force spectra. The scaling method used to develop the initial power spectral density (PSD) environments for deriving the random forces for the rocket engine case is based on the Barrett Criteria developed at Marshall Space Flight Center in 1963. This invention approach can be applied in the aerospace, automotive, and other industries to obtain reliable dynamic loads and responses from a finite element model for any structure subject to multipoint random vibration excitations.

  16. Ehrenfest approach to open double-well dynamics.

    PubMed

    Choi, Stephen; Onofrio, Roberto; Sundaram, Bala

    2015-10-01

    We consider an Ehrenfest approximation for a particle in a double-well potential in the presence of an external environment schematized as a finite resource heat bath. This allows us to explore how the limitations in the applicability of Ehrenfest dynamics to nonlinear systems are modified in an open system setting. Within this framework, we have identified an environment-induced spontaneous symmetry breaking mechanism, and we argue that the Ehrenfest approximation becomes increasingly valid in the limit of strong coupling to the external reservoir, either in the form of an increasing number of oscillators or increasing temperature. The analysis also suggests a rather intuitive picture for the general phenomenon of quantum tunneling and its interplay with classical thermal activation processes, which may be of relevance in physical chemistry, ultracold atom physics, and fast-switching dynamics such as in superconducting digital electronics. PMID:26565304

  17. Dynamical phase transition in the open Dicke model

    PubMed Central

    Klinder, Jens; Keßler, Hans; Wolke, Matthias; Mathey, Ludwig; Hemmerich, Andreas

    2015-01-01

    The Dicke model with a weak dissipation channel is realized by coupling a Bose–Einstein condensate to an optical cavity with ultranarrow bandwidth. We explore the dynamical critical properties of the Hepp–Lieb–Dicke phase transition by performing quenches across the phase boundary. We observe hysteresis in the transition between a homogeneous phase and a self-organized collective phase with an enclosed loop area showing power-law scaling with respect to the quench time, which suggests an interpretation within a general framework introduced by Kibble and Zurek. The observed hysteretic dynamics is well reproduced by numerically solving the mean-field equation derived from a generalized Dicke Hamiltonian. Our work promotes the understanding of nonequilibrium physics in open many-body systems with infinite range interactions. PMID:25733892

  18. Dynamical phase transition in the open Dicke model.

    PubMed

    Klinder, Jens; Keßler, Hans; Wolke, Matthias; Mathey, Ludwig; Hemmerich, Andreas

    2015-03-17

    The Dicke model with a weak dissipation channel is realized by coupling a Bose-Einstein condensate to an optical cavity with ultranarrow bandwidth. We explore the dynamical critical properties of the Hepp-Lieb-Dicke phase transition by performing quenches across the phase boundary. We observe hysteresis in the transition between a homogeneous phase and a self-organized collective phase with an enclosed loop area showing power-law scaling with respect to the quench time, which suggests an interpretation within a general framework introduced by Kibble and Zurek. The observed hysteretic dynamics is well reproduced by numerically solving the mean-field equation derived from a generalized Dicke Hamiltonian. Our work promotes the understanding of nonequilibrium physics in open many-body systems with infinite range interactions. PMID:25733892

  19. Development and Design of a Dynamic Multimedia Item Generation Mechanism

    ERIC Educational Resources Information Center

    Weng, Ting-Sheng

    2012-01-01

    This research applies multimedia technology to design a dynamic item generation method that can adaptively adjust the difficulty level of items according to the level of the testee. The method is based on interactive testing software developed by Flash Actionscript, and provides a testing solution for users by automatically distributing items of…

  20. Designing Guidance for Interpreting Dynamic Visualizations: Generating versus Reading Explanations

    ERIC Educational Resources Information Center

    Ryoo, Kihyun; Linn, Marcia C.

    2014-01-01

    We compared designs of guidance to support students while interacting with dynamic visualizations of complex scientific phenomena in inquiry instruction. Three hundred thirty-two 7th-grade students were randomly assigned to either a reading or a generating condition and completed a web-based inquiry unit focusing on energy concepts in…

  1. Mantle flow and dynamic topography associated with slab window opening: Insights from laboratory models

    NASA Astrophysics Data System (ADS)

    Guillaume, Benjamin; Moroni, Monica; Funiciello, Francesca; Martinod, Joseph; Faccenna, Claudio

    2010-12-01

    We present dynamically self-consistent mantle-scale laboratory models that have been conducted to improve our understanding of the influence of slab window opening on subduction dynamics, mantle flow and associated dynamic topography over geological time scales. The adopted setup consists of a two-layer linearly viscous system simulating the subduction of a fixed plate of silicone (lithosphere) under negative buoyancy in a viscous layer of glucose syrup (mantle). Our experimental setting is also characterized by a constant-width rectangular window located at the center of a laterally confined slab, modeling the case of the interaction of a trench-parallel spreading ridge with a wide subduction zone. We found that the opening of a slab window does not produce consistent changes of the geometry and the kinematics of the slab. On the contrary, slab-induced mantle circulation, quantified both in the vertical and horizontal sections using the Feature Tracking image analysis technique, is strongly modified. In particular, rollback subduction and the opening of the slab window generate a complex mantle circulation pattern characterized by the presence of poloidal and toroidal components, with the importance of each evolving according to kinematic stages. Mantle coming from the oceanic domain floods through the slab window, indenting the supra-slab mantle zone and producing its deformation without any mixing between mantle portions. The opening of the slab window and the upwelling of sub-slab mantle produce a regional-scale non-isostatic topographic uplift of the overriding plate that would correspond to values ranging between ca. 1 and 5 km in nature. Assuming that our modeling results can be representative of the natural behavior of subduction zones, we compared them to the tectonics and volcanism of the Patagonian subduction zone. We found that the anomalous backarc volcanism that has been developing since the middle Miocene could result from the lateral flow of sub

  2. Dynamically generated flat-band phases in optical kagome lattices

    NASA Astrophysics Data System (ADS)

    Chern, Gia-Wei; Chien, Chih-Chun; Di Ventra, Massimiliano

    2014-07-01

    Motivated by recent advances in the realization of complex two-dimensional optical lattices, we investigate theoretically the quantum transport of ultracold fermions in an optical kagome lattice. In particular, we focus on its extensively degenerate localized states (flat band). By loading fermions in a partial region of the lattice and depleting the mobile atoms at the far boundary of the initially unoccupied region, we find a dynamically generated flat-band insulator, which is also a population-inverted state. We further show that inclusion of weak repulsion leads to a dynamical stripe phase for two-component fermions in a similar setup. Finally, by preparing a topological insulating state in a partially occupied kagome lattice, we find that the topological chiral current decays but exhibits an interesting oscillating dynamics during the nonequilibrium transport. Given the broad variety of lattice geometries supporting localized or topological states, our work suggests new possibilities for using geometrical effects and their dynamics in atomtronic devices.

  3. Open microdroplet diluter for concentration-gradient generation

    NASA Astrophysics Data System (ADS)

    Nee Tan, Jue; Alan, Tuncay; Neild, Adrian

    2014-08-01

    The requirement of producing concentration gradients rapidly and controllably is essential in many biochemical applications. The use of microdroplets is advantageous as the droplets act as isolated open reaction vessels that are proficient in containing a variety of reagents. We present a concept of producing concentration gradients over an array of open wells, using a concentrated primary drop which, whilst in motion, merges with successive buffer droplets and, as a result, leaves behind droplets of different concentrations. The primary drop is positioned to slide down a 90° incline over several secondary drops, whereby merging, mixing, and detaching occurs within each well.

  4. Force-generation and dynamic instability of microtubule bundles

    PubMed Central

    Laan, Liedewij; Husson, Julien; Munteanu, E. Laura; Kerssemakers, Jacob W. J.; Dogterom, Marileen

    2008-01-01

    Individual dynamic microtubules can generate pushing or pulling forces when their growing or shrinking ends are in contact with cellular objects such as the cortex or chromosomes. These microtubules can operate in parallel bundles, for example when interacting with mitotic chromosomes. Here, we investigate the force-generating capabilities of a bundle of growing microtubules and study the effect that force has on the cooperative dynamics of such a bundle. We used an optical tweezers setup to study microtubule bundles growing against a microfabricated rigid barrier in vitro. We show that multiple microtubules can generate a pushing force that increases linearly with the number of microtubules present. In addition, the bundle can cooperatively switch to a shrinking state, due to a force-induced coupling of the dynamic instability of single microtubules. In the presence of GMPCPP, bundle catastrophes no longer occur, and high bundle forces are reached more effectively. We reproduce the observed behavior with a simple simulation of microtubule bundle dynamics that takes into account previously measured force effects on single microtubules. Using this simulation, we also show that a constant compressive force on a growing bundle leads to oscillations in bundle length that are of potential relevance for chromosome oscillations observed in living cells. PMID:18577596

  5. Open architecture applied to next-generation weapons

    NASA Astrophysics Data System (ADS)

    Rose, Leo J.; Shaver, Jonathan; Young, Quinn; Christensen, Jacob

    2014-06-01

    The Air Force Research Laboratory (AFRL) has postulated a new weapons concept known as Flexible Weapons to define and develop technologies addressing a number of challenges. Initial studies on capability attributes of this concept have been conducted and AFRL plans to continue systems engineering studies to quantify metrics against which the value of capabilities can be assessed. An important aspect of Flexible Weapons is having a modular "plug-n-play" hardware and software solution, supported by an Open Architecture and Universal Armament Interface (UAI) common interfaces. The modular aspect of Flexible Weapons is a means to successfully achieving interoperability and composability at the weapon level. Interoperability allows for vendor competition, timely technology refresh, and avoids costs by ensuring standard interfaces widely supported in industry, rather than an interface unique to a particular vendor. Composability provides for the means to arrange an open end set of useful weapon systems configurations. The openness of Flexible Weapons is important because it broadens the set of computing technologies, software updates, and other technologies to be introduced into the weapon system, providing the warfighter with new capabilities at lower costs across the life cycle. One of the most critical steps in establishing a Modular, Open Systems Architecture (MOSA) for weapons is the validation of compliance with the standard.

  6. Dynamic simulation of dual-speed wind turbine generation

    SciTech Connect

    Muljadi, E.; Butterfield, C.P.

    1996-10-01

    Induction generators have been used since the early development of utility-scale wind turbine generation. An induction generator is the generator of choice because of its ruggedness, and low cost. With an induction generator, the operating speed of the wind turbine is limited to a narrow range (almost constant speed). Dual- speed operation can be accomplished by using an induction generator with two different sets of winding configurations or by using two induction generators with two different rated speeds. With single- speed operation, the wind turbine operates at different power coefficients (Cp) as the wind speed varies. The operation at maximum Cp can occur only at a single wind speed. However, if the wind speed varies across a wider range, the operating Cp will vary significantly. Dual-speed operation has the advantage of enabling the wind turbine to operate at near maximum Cp over a wider range of wind-speeds. Thus, annual energy production can be increased. The dual-speed mode may generate less energy than a variable-speed mode; nevertheless, it offers an alternative to capture more energy than single-speed operation. In this paper, dual-speed operation of a wind turbine will be investigated. One type of control algorithm for dual- speed operation is proposed. Results from a dynamic simulation will be presented to show how the control algorithm works and how power, current and torque of the system vary as the wind turbine is exposed to varying wind speeds.

  7. ERCOT's Dynamic Model of Wind Turbine Generators: Preprint

    SciTech Connect

    Muljadi, E.; Butterfield, C. P.; Conto, J.; Donoho, K.

    2005-08-01

    By the end of 2003, the total installed wind farm capacity in the Electric Reliability Council of Texas (ERCOT) system was approximately 1 gigawatt (GW) and the total in the United States was about 5 GW. As the number of wind turbines installed throughout the United States increases, there is a greater need for dynamic wind turbine generator models that can properly model entire power systems for different types of analysis. This paper describes the ERCOT dynamic models and simulations of a simple network with different types of wind turbine models currently available.

  8. Open-system dynamics of entanglement: a key issues review.

    PubMed

    Aolita, Leandro; de Melo, Fernando; Davidovich, Luiz

    2015-04-01

    One of the greatest challenges in the fields of quantum information processing and quantum technologies is the detailed coherent control over each and every constituent of quantum systems with an ever increasing number of particles. Within this endeavor, harnessing of many-body entanglement against the detrimental effects of the environment is a major pressing issue. Besides being an important concept from a fundamental standpoint, entanglement has been recognized as a crucial resource for quantum speed-ups or performance enhancements over classical methods. Understanding and controlling many-body entanglement in open systems may have strong implications in quantum computing, quantum simulations of many-body systems, secure quantum communication or cryptography, quantum metrology, our understanding of the quantum-to-classical transition, and other important questions of quantum foundations.In this paper we present an overview of recent theoretical and experimental efforts to underpin the dynamics of entanglement under the influence of noise. Entanglement is thus taken as a dynamic quantity on its own, and we survey how it evolves due to the unavoidable interaction of the entangled system with its surroundings. We analyze several scenarios, corresponding to different families of states and environments, which render a very rich diversity of dynamical behaviors.In contrast to single-particle quantities, like populations and coherences, which typically vanish only asymptotically in time, entanglement may disappear at a finite time. In addition, important classes of entanglement display an exponential decay with the number of particles when subject to local noise, which poses yet another threat to the already-challenging scaling of quantum technologies. Other classes, however, turn out to be extremely robust against local noise. Theoretical results and recent experiments regarding the difference between local and global decoherence are summarized. Control and

  9. Solitary waves in twist-opening models of DNA dynamics

    NASA Astrophysics Data System (ADS)

    Gaeta, Giuseppe; Venier, Laura

    2008-07-01

    We analyze traveling solitary wave solutions in the Barbi-Cocco-Peyrard twist-opening model of nonlinear DNA dynamics. We identify conditions, involving an interplay of physical parameters and asymptotic behavior, for such solutions to exist, and provide first-order ordinary differential equations whose solutions give the required solitary waves; these are not solvable in analytical terms, but are easily integrated numerically. The conditions for existence of solitary waves are not satisfied for trivial asymptotic behavior and physical values of the parameters, i.e., the Barbi-Cocco-Peyrard model admits only solitary wave solutions that entail a global modification of the molecule; this is compared with the situation met in another recently formulated class of DNA models with two degrees of freedom per site.

  10. Thermofield dynamics extension of the open string field theory

    NASA Astrophysics Data System (ADS)

    Botta Cantcheff, M.; Scherer Santos, R. J.

    2016-03-01

    We study the application of the rules of thermofield dynamics (TFD) to the covariant formulation of open-string field theory. We extend the states space and fields according to the duplication rules of TFD and construct the corresponding classical action. The result is interpreted as a theory whose fields would encode the statistical information of open strings. The physical spectrum of the free theory is studied through the cohomology of the extended Becchi, Rouet, Stora and Tyutin (BRST) charge, and, as a result, we get new fields in the spectrum emerging by virtue of the quantum entanglement, and, noticeably, it presents degrees of freedom that could be identified as those of closed strings. We also show, however, that their appearing in the action is directly related to the choice of the inner product in the extended algebra, so that different sectors of fields could be eliminated from the theory by choosing that product conveniently. Finally, we study the extension of the three-vertex interaction and provide a simple prescription for it of which the results at tree level agree with those of the conventional theory.

  11. DNA dynamics in aqueous solution: opening the double helix

    NASA Technical Reports Server (NTRS)

    Pohorille, A.; Ross, W. S.; Tinoco, I. Jr; MacElroy, R. D. (Principal Investigator)

    1990-01-01

    The opening of a DNA base pair is a simple reaction that is a prerequisite for replication, transcription, and other vital biological functions. Understanding the molecular mechanisms of biological reactions is crucial for predicting and, ultimately, controlling them. Realistic computer simulations of the reactions can provide the needed understanding. To model even the simplest reaction in aqueous solution requires hundreds of hours of supercomputing time. We have used molecular dynamics techniques to simulate fraying of the ends of a six base pair double strand of DNA, [TCGCGA]2, where the four bases of DNA are denoted by T (thymine), C (cytosine), G (guanine), and A (adenine), and to estimate the free energy barrier to this process. The calculations, in which the DNA was surrounded by 2,594 water molecules, required 50 hours of CRAY-2 CPU time for every simulated 100 picoseconds. A free energy barrier to fraying, which is mainly characterized by the movement of adenine away from thymine into aqueous environment, was estimated to be 4 kcal/mol. Another fraying pathway, which leads to stacking between terminal adenine and thymine, was also observed. These detailed pictures of the motions and energetics of DNA base pair opening in water are a first step toward understanding how DNA will interact with any molecule.

  12. Dynamical generation of maximally entangled states in two identical cavities

    SciTech Connect

    Alexanian, Moorad

    2011-11-15

    The generation of entanglement between two identical coupled cavities, each containing a single three-level atom, is studied when the cavities exchange two coherent photons and are in the N=2,4 manifolds, where N represents the maximum number of photons possible in either cavity. The atom-photon state of each cavity is described by a qutrit for N=2 and a five-dimensional qudit for N=4. However, the conservation of the total value of N for the interacting two-cavity system limits the total number of states to only 4 states for N=2 and 8 states for N=4, rather than the usual 9 for two qutrits and 25 for two five-dimensional qudits. In the N=2 manifold, two-qutrit states dynamically generate four maximally entangled Bell states from initially unentangled states. In the N=4 manifold, two-qudit states dynamically generate maximally entangled states involving three or four states. The generation of these maximally entangled states occurs rather rapidly for large hopping strengths. The cavities function as a storage of periodically generated maximally entangled states.

  13. Generating Spatiotemporal Joint Torque Patterns from Dynamical Synchronization of Distributed Pattern Generators

    PubMed Central

    Pitti, Alexandre; Lungarella, Max; Kuniyoshi, Yasuo

    2009-01-01

    Pattern generators found in the spinal cord are no more seen as simple rhythmic oscillators for motion control. Indeed, they achieve flexible and dynamical coordination in interaction with the body and the environment dynamics giving to rise motor synergies. Discovering the mechanisms underlying the control of motor synergies constitutes an important research question not only for neuroscience but also for robotics: the motors coordination of high dimensional robotic systems is still a drawback and new control methods based on biological solutions may reduce their overall complexity. We propose to model the flexible combination of motor synergies in embodied systems via partial phase synchronization of distributed chaotic systems; for specific coupling strength, chaotic systems are able to phase synchronize their dynamics to the resonant frequencies of one external force. We take advantage of this property to explore and exploit the intrinsic dynamics of one specified embodied system. In two experiments with bipedal walkers, we show how motor synergies emerge when the controllers phase synchronize to the body's dynamics, entraining it to its intrinsic behavioral patterns. This stage is characterized by directed information flow from the sensors to the motors exhibiting the optimal situation when the body dynamics drive the controllers (mutual entrainment). Based on our results, we discuss the relevance of our findings for modeling the modular control of distributed pattern generators exhibited in the spinal cord, and for exploring the motor synergies in robots. PMID:20011216

  14. Generalized Kraus operators and generators of quantum dynamical semigroups

    NASA Astrophysics Data System (ADS)

    Alazzawi, Sabina; Baumgartner, Bernhard

    2015-09-01

    Quantum dynamical semigroups play an important role in the description of physical processes such as diffusion, radiative decay or other non-equilibrium events. Taking strongly continuous and trace preserving semigroups into consideration, we show that, under a special criterion, the generator of such a group admits a certain generalized standard form, thereby shedding new light on known approaches in this direction. Furthermore, we illustrate our analysis in concrete examples.

  15. Role of Many-Electron Dynamics in High Harmonic Generation

    SciTech Connect

    Gordon, Ariel; Kaertner, Franz X.; Rohringer, Nina; Santra, Robin

    2006-06-09

    High harmonic generation (HHG) in many-electron atoms is studied theoretically. The breakdown of the frozen-core single active electron approximation is demonstrated, as it predicts roughly the same radiation amplitude in all noble gases. This is in contradiction with experiments, where heavier noble gases are known to emit much stronger HHG radiation than lighter ones. This experimental behavior of the noble gases can be qualitatively reproduced when many-electron dynamics, within a simple approximation, is taken into account.

  16. Numerical study of dynamical mass generation in QED3

    NASA Astrophysics Data System (ADS)

    Bashir, A.; Huet, A.; Raya, A.

    2006-05-01

    We carry out a numerical study of dynamical generation of fermion masses by solving the Schwinger-Dyson equation for the fermion propagator in three-dimensional quenched Quantum Electrodynamics (QED3) in various gauges. We employ an ansatz for the three-point vertex which satisfies the Ward-Green-Takahashi identity, namely, the Ball-Chiu Vertex. We discuss the advantages of our numerical method over some earlier ones.

  17. Dynamical generation of the weak and dark matter scale

    NASA Astrophysics Data System (ADS)

    Hambye, Thomas; Strumia, Alessandro

    2013-09-01

    Assuming that naturalness should be modified by ignoring quadratic divergences, we propose a simple extension of the standard model where the weak scale is dynamically generated together with an automatically stable vector. Identifying it as thermal dark matter, the model has one free parameter. It predicts one extra scalar, detectable at colliders, which triggers a first-order dark/electroweak cosmological phase transition with production of gravitational waves. Vacuum stability holds up to the Planck scale.

  18. Modeling Airborne Beryllium Concentrations From Open Air Dynamic Testing

    NASA Astrophysics Data System (ADS)

    Becker, N. M.

    2003-12-01

    A heightened awareness of airborne beryllium contamination from industrial activities was reestablished during the late 1980's and early 1990's when it became recognized that Chronic Beryllium Disease (CBD) had not been eradicated, and that the Occupational Health and Safety Administration standards for occupational air exposure to beryllium may not be sufficiently protective. This was in response to the observed CBD increase in multiple industrial settings where beryllium was manufactured and/or machined, thus producing beryllium particulates which are then available for redistribution by airborne transport. Sampling and modeling design activities were expanded at Los Alamos National Laboratory in New Mexico to evaluate potential airborne beryllium exposure to workers who might be exposed during dynamic testing activities associated with nuclear weapons Stockpile Stewardship. Herein is presented the results of multiple types of collected air measurements that were designed to characterize the production and dispersion of beryllium used in components whose performance is evaluated during high explosive detonation at open air firing sites. Data from fallout, high volume air, medium volume air, adhesive film, particle size impactor, and fine-particulate counting techniques will be presented, integrated, and applied in dispersion modeling to assess potential onsite and offsite personal exposures resulting from dynamic testing activities involving beryllium.

  19. Generational Spreading Speed and the Dynamics of Population Range Expansion.

    PubMed

    Bateman, Andrew W; Neubert, Michael G; Krkošek, Martin; Lewis, Mark A

    2015-09-01

    Some of the most fundamental quantities in population ecology describe the growth and spread of populations. Population dynamics are often characterized by the annual rate of increase, λ, or the generational rate of increase, R0. Analyses involving R0 have deepened our understanding of disease dynamics and life-history complexities beyond that afforded by analysis of annual growth alone. While range expansion is quantified by the annual spreading speed, a spatial analog of λ, an R0-like expression for the rate of spread is missing. Using integrodifference models, we derive the appropriate generational spreading speed for populations with complex (stage-structured) life histories. The resulting measure, relevant to locations near the expanding edge of a (re)colonizing population, incorporates both local population growth and explicit spatial dispersal rather than solely growth across a population, as is the case for R0. The calculations for generational spreading speed are often simpler than those for annual spreading speed, and analytic or partial analytic solutions can yield insight into the processes that facilitate or slow a population's spatial spread. We analyze the spatial dynamics of green crabs, sea otters, and teasel as examples to demonstrate the flexibility of our methods and the intuitive insights that they afford. PMID:26655354

  20. PREVENTION OF ACID MINE DRAINAGE GENERATION FROM OPEN-PIT MINE HIGHWALLS

    EPA Science Inventory



    Exposed, open pit mine highwalls contribute significantly to the production of acid mine

    drainage (AMD) thus causing environmental concerns upon closure of an operating mine. Available information on the generation of AMD from open-pit mine highwalls is very limit...

  1. Integration of an open interface PC scene generator using COTS DVI converter hardware

    NASA Astrophysics Data System (ADS)

    Nordland, Todd; Lyles, Patrick; Schultz, Bret

    2006-05-01

    Commercial-Off-The-Shelf (COTS) personal computer (PC) hardware is increasingly capable of computing high dynamic range (HDR) scenes for military sensor testing at high frame rates. New electro-optical and infrared (EO/IR) scene projectors feature electrical interfaces that can accept the DVI output of these PC systems. However, military Hardware-in-the-loop (HWIL) facilities such as those at the US Army Aviation and Missile Research Development and Engineering Center (AMRDEC) utilize a sizeable inventory of existing projection systems that were designed to use the Silicon Graphics Incorporated (SGI) digital video port (DVP, also known as DVP2 or DD02) interface. To mate the new DVI-based scene generation systems to these legacy projection systems, CG2 Inc., a Quantum3D Company (CG2), has developed a DVI-to-DVP converter called Delta DVP. This device takes progressive scan DVI input, converts it to digital parallel data, and combines and routes color components to derive a 16-bit wide luminance channel replicated on a DVP output interface. The HWIL Functional Area of AMRDEC has developed a suite of modular software to perform deterministic real-time, wave band-specific rendering of sensor scenes, leveraging the features of commodity graphics hardware and open source software. Together, these technologies enable sensor simulation and test facilities to integrate scene generation and projection components with diverse pedigrees.

  2. Dynamic test input generation for multiple-fault isolation

    NASA Technical Reports Server (NTRS)

    Schaefer, Phil

    1990-01-01

    Recent work is Causal Reasoning has provided practical techniques for multiple fault diagnosis. These techniques provide a hypothesis/measurement diagnosis cycle. Using probabilistic methods, they choose the best measurements to make, then update fault hypotheses in response. For many applications such as computers and spacecraft, few measurement points may be accessible, or values may change quickly as the system under diagnosis operates. In these cases, a hypothesis/measurement cycle is insufficient. A technique is presented for a hypothesis/test-input/measurement diagnosis cycle. In contrast to generating tests a priori for determining device functionality, it dynamically generates tests in response to current knowledge about fault probabilities. It is shown how the mathematics previously used for measurement specification can be applied to the test input generation process. An example from an efficient implementation called Multi-Purpose Causal (MPC) is presented.

  3. Upon Generating (2+1)-dimensional Dynamical Systems

    NASA Astrophysics Data System (ADS)

    Zhang, Yufeng; Bai, Yang; Wu, Lixin

    2016-06-01

    Under the framework of the Adler-Gel'fand-Dikii(AGD) scheme, we first propose two Hamiltonian operator pairs over a noncommutative ring so that we construct a new dynamical system in 2+1 dimensions, then we get a generalized special Novikov-Veselov (NV) equation via the Manakov triple. Then with the aid of a special symmetric Lie algebra of a reductive homogeneous group G, we adopt the Tu-Andrushkiw-Huang (TAH) scheme to generate a new integrable (2+1)-dimensional dynamical system and its Hamiltonian structure, which can reduce to the well-known (2+1)-dimensional Davey-Stewartson (DS) hierarchy. Finally, we extend the binormial residue representation (briefly BRR) scheme to the super higher dimensional integrable hierarchies with the help of a super subalgebra of the super Lie algebra sl(2/1), which is also a kind of symmetric Lie algebra of the reductive homogeneous group G. As applications, we obtain a super 2+1 dimensional MKdV hierarchy which can be reduced to a super 2+1 dimensional generalized AKNS equation. Finally, we compare the advantages and the shortcomings for the three schemes to generate integrable dynamical systems.

  4. The Dynamical Generation of Current Sheets in Astrophysical Plasma Turbulence

    NASA Astrophysics Data System (ADS)

    Howes, Gregory G.

    2016-08-01

    Turbulence profoundly affects particle transport and plasma heating in many astrophysical plasma environments, from galaxy clusters to the solar corona and solar wind to Earth's magnetosphere. Both fluid and kinetic simulations of plasma turbulence ubiquitously generate coherent structures, in the form of current sheets, at small scales, and the locations of these current sheets appear to be associated with enhanced rates of dissipation of the turbulent energy. Therefore, illuminating the origin and nature of these current sheets is critical to identifying the dominant physical mechanisms of dissipation, a primary aim at the forefront of plasma turbulence research. Here, we present evidence from nonlinear gyrokinetic simulations that strong nonlinear interactions between counterpropagating Alfvén waves, or strong Alfvén wave collisions, are a natural mechanism for the generation of current sheets in plasma turbulence. Furthermore, we conceptually explain this current sheet development in terms of the nonlinear dynamics of Alfvén wave collisions, showing that these current sheets arise through constructive interference among the initial Alfvén waves and nonlinearly generated modes. The properties of current sheets generated by strong Alfvén wave collisions are compared to published observations of current sheets in the Earth's magnetosheath and the solar wind, and the nature of these current sheets leads to the expectation that Landau damping of the constituent Alfvén waves plays a dominant role in the damping of turbulently generated current sheets.

  5. Dynamics of the coronas of open star clusters

    NASA Astrophysics Data System (ADS)

    Danilov, V. M.; Putkov, S. I.; Seleznev, A. F.

    2014-12-01

    A method for distinguishing coronas in models of open star clusters is proposed. The method uses trajectories of stars that do not leave the coronas over time intervals t comparable to the mean lifetime τ of the clusters. Corona models are constructed for six numerical cluster models, and the direction and character of the dynamical evolution of the coronas are determined. Retrograde stellar motions are dominant in the coronas. In spite of some signs of dynamical instability of the coronas (small densities compared to the critical density and accelerated expansion of the coronas), the formation of close-toequilibrium density and phase-density distributions at distances from one to three cluster tidal radii from the cluster center can be seen. Approximations are constructed for the corona and cluster phase density using distributions that depend on three parameters (the parameters of the stellar motion in the Lindblad rotating coordinate system). This temporary equilibrium of the corona is due to balance in the number of starsmoving from the central areas of the cluster to the corona, and from the corona to the corona periphery or beyond. Evidence that corona stars can be gravitationally bound at distances out to four tidal radii from the cluster center is found: the presence of nearly periodic retrograde mean motions of a large number of corona stars in the Galactic plane; 91-99% of corona stars satisfy the gravitational binding criterion of Ross, Mennim and Heggie over time intervals that are close to the mean cluster lifetime. The escape rate from the corona is estimated for t ≥ τ, and found to be from 0.03 to 0.23 of the number of corona stars per violent relaxation time.

  6. Improving Dynamic Load and Generator Response PerformanceTools

    SciTech Connect

    Lesieutre, Bernard C.

    2005-11-01

    This report is a scoping study to examine research opportunities to improve the accuracy of the system dynamic load and generator models, data and performance assessment tools used by CAISO operations engineers and planning engineers, as well as those used by their counterparts at the California utilities, to establish safe operating margins. Model-based simulations are commonly used to assess the impact of credible contingencies in order to determine system operating limits (path ratings, etc.) to ensure compliance with NERC and WECC reliability requirements. Improved models and a better understanding of the impact of uncertainties in these models will increase the reliability of grid operations by allowing operators to more accurately study system voltage problems and the dynamic stability response of the system to disturbances.

  7. A femtosecond stimulated Raman spectroscopic study on the oxazine ring opening dynamics of structurally-modified indolobenzoxazines

    NASA Astrophysics Data System (ADS)

    Redeckas, Kipras; Toliautas, Stepas; Steponavičiūtė, Rasa; Šačkus, Algirdas; Sulskus, Juozas; Vengris, Mikas

    2016-06-01

    Steady-state and time-resolved femtosecond stimulated Raman scattering spectroscopic methods were applied to elucidate the photodynamics and the oxazine ring opening contingency in phenyl-substituted indolobenzoxazine systems. Using wavelength- and pulse duration-tunable multi-pulse techniques, we have measured the (static) stimulated Raman spectra of the chemically ring-opened indolobenzoxazines, and the (dynamic) femto-to-nanosecond time- and wavenumber-resolved spectra of their photo-generated species. The two experimental realizations show a notable vibronic disparity, thereby indicating the structural difference between the chemically bond-cleaved and the UV excitation produced species.

  8. Multi-channel electronic and vibrational dynamics in polyatomic resonant high-order harmonic generation

    PubMed Central

    Ferré, A.; Boguslavskiy, A. E.; Dagan, M.; Blanchet, V.; Bruner, B. D.; Burgy, F.; Camper, A.; Descamps, D.; Fabre, B.; Fedorov, N.; Gaudin, J.; Geoffroy, G.; Mikosch, J.; Patchkovskii, S.; Petit, S.; Ruchon, T.; Soifer, H.; Staedter, D.; Wilkinson, I.; Stolow, A.; Dudovich, N.; Mairesse, Y.

    2015-01-01

    High-order harmonic generation in polyatomic molecules generally involves multiple channels of ionization. Their relative contribution can be strongly influenced by the presence of resonances, whose assignment remains a major challenge for high-harmonic spectroscopy. Here we present a multi-modal approach for the investigation of unaligned polyatomic molecules, using SF6 as an example. We combine methods from extreme-ultraviolet spectroscopy, above-threshold ionization and attosecond metrology. Fragment-resolved above-threshold ionization measurements reveal that strong-field ionization opens at least three channels. A shape resonance in one of them is found to dominate the signal in the 20–26 eV range. This resonance induces a phase jump in the harmonic emission, a switch in the polarization state and different dynamical responses to molecular vibrations. This study demonstrates a method for extending high-harmonic spectroscopy to polyatomic molecules, where complex attosecond dynamics are expected. PMID:25608712

  9. Multi-channel electronic and vibrational dynamics in polyatomic resonant high-order harmonic generation.

    PubMed

    Ferré, A; Boguslavskiy, A E; Dagan, M; Blanchet, V; Bruner, B D; Burgy, F; Camper, A; Descamps, D; Fabre, B; Fedorov, N; Gaudin, J; Geoffroy, G; Mikosch, J; Patchkovskii, S; Petit, S; Ruchon, T; Soifer, H; Staedter, D; Wilkinson, I; Stolow, A; Dudovich, N; Mairesse, Y

    2015-01-01

    High-order harmonic generation in polyatomic molecules generally involves multiple channels of ionization. Their relative contribution can be strongly influenced by the presence of resonances, whose assignment remains a major challenge for high-harmonic spectroscopy. Here we present a multi-modal approach for the investigation of unaligned polyatomic molecules, using SF6 as an example. We combine methods from extreme-ultraviolet spectroscopy, above-threshold ionization and attosecond metrology. Fragment-resolved above-threshold ionization measurements reveal that strong-field ionization opens at least three channels. A shape resonance in one of them is found to dominate the signal in the 20-26 eV range. This resonance induces a phase jump in the harmonic emission, a switch in the polarization state and different dynamical responses to molecular vibrations. This study demonstrates a method for extending high-harmonic spectroscopy to polyatomic molecules, where complex attosecond dynamics are expected. PMID:25608712

  10. Bright bichromatic entanglement and quantum dynamics of sum frequency generation

    SciTech Connect

    Olsen, M. K.; Bradley, A. S.

    2008-02-15

    We investigate the quantum properties of the well-known process of sum frequency generation, showing that it is potentially a very useful source of nonclassical states of the electromagnetic field, some of which are not possible with the more common techniques. We show that it can produce quadrature squeezed light, bright bichromatic entangled states, and symmetric and asymmetric demonstrations of the Einstein-Podolsky-Rosen paradox. We also show that the semiclassical equations totally fail to describe the mean-field dynamics when the cavity is strongly pumped.

  11. Dynamic stability experiments in sodium-heated steam generators. [LMFBR

    SciTech Connect

    France, D.M.; Roy, R.; Carlson, R.D.; Chiang, T.

    1984-01-01

    Seventy-two dynamic stability tests were performed in the sodium-heated boiling-water test facility at Argonne National Laboratory. A full-scale LMFBR steam generator tube was employed as the test section operating over the water parameter ranges of 6.9 to 15.9 MPa pressure and 170 to 800 kg/m/sup 2/.s mass flux. The stability thresholds from the test compared well to the predictions of a modified version of a correlation equation recently published by other investigators. Typical experimental data and the modified correlation equation are presented.

  12. Nonlinear dynamic model of a solar stream generator

    NASA Astrophysics Data System (ADS)

    Ray, A.

    1981-01-01

    A thermal-hydraulic model of a once-through subcritical steam generator has been developed for predicting dynamic characteristics of solar thermal power plants as well as for control system design. The purpose of the model is to evaluate the overall system performance and component interaction with sufficient accuracy for controller design, rather than to describe the microscopic details occurring within the steam generator. The three-section (compressed water, two-phase mixture, and superheated steam) model with time-varying phase boundaries is described by a set of nonlinear differential equations derived from conservation of mass, momentum and energy. Local stability of the model has been examined at different levels of insolation. Transient response of six plant variables due to independent step disturbances in three input variables are presented as typical results.

  13. Openness, Dynamic Specialization, and the Disaggregated Future of Higher Education

    ERIC Educational Resources Information Center

    Wiley, David; Hilton, John, III

    2009-01-01

    Openness is a fundamental value underlying significant changes in society and is a prerequisite to changes institutions of higher education need to make in order to remain relevant to the society in which they exist. There are a number of ways institutions can be more open, including programs of open sharing of educational materials. Individual…

  14. Dynamics of microresonator frequency comb generation: models and stability

    NASA Astrophysics Data System (ADS)

    Hansson, Tobias; Wabnitz, Stefan

    2016-06-01

    Microresonator frequency combs hold promise for enabling a new class of light sources that are simultaneously both broadband and coherent, and that could allow for a profusion of potential applications. In this article, we review various theoretical models for describing the temporal dynamics and formation of optical frequency combs. These models form the basis for performing numerical simulations that can be used in order to better understand the comb generation process, for example helping to identify the universal combcharacteristics and their different associated physical phenomena. Moreover, models allow for the study, design and optimization of comb properties prior to the fabrication of actual devices. We consider and derive theoretical formalisms based on the Ikeda map, the modal expansion approach, and the Lugiato-Lefever equation. We further discuss the generation of frequency combs in silicon resonators featuring multiphoton absorption and free-carrier effects. Additionally, we review comb stability properties and consider the role of modulational instability as well as of parametric instabilities due to the boundary conditions of the cavity. These instability mechanisms are the basis for comprehending the process of frequency comb formation, for identifying the different dynamical regimes and the associated dependence on the comb parameters. Finally, we also discuss the phenomena of continuous wave bi- and multistability and its relation to the observation of mode-locked cavity solitons.

  15. IllinoisGRMHD: an open-source, user-friendly GRMHD code for dynamical spacetimes

    NASA Astrophysics Data System (ADS)

    Etienne, Zachariah B.; Paschalidis, Vasileios; Haas, Roland; Mösta, Philipp; Shapiro, Stuart L.

    2015-09-01

    In the extreme violence of merger and mass accretion, compact objects like black holes and neutron stars are thought to launch some of the most luminous outbursts of electromagnetic and gravitational wave energy in the Universe. Modeling these systems realistically is a central problem in theoretical astrophysics, but has proven extremely challenging, requiring the development of numerical relativity codes that solve Einstein's equations for the spacetime, coupled to the equations of general relativistic (ideal) magnetohydrodynamics (GRMHD) for the magnetized fluids. Over the past decade, the Illinois numerical relativity (ILNR) group's dynamical spacetime GRMHD code has proven itself as a robust and reliable tool for theoretical modeling of such GRMHD phenomena. However, the code was written ‘by experts and for experts’ of the code, with a steep learning curve that would severely hinder community adoption if it were open-sourced. Here we present IllinoisGRMHD, which is an open-source, highly extensible rewrite of the original closed-source GRMHD code of the ILNR group. Reducing the learning curve was the primary focus of this rewrite, with the goal of facilitating community involvement in the code's use and development, as well as the minimization of human effort in generating new science. IllinoisGRMHD also saves computer time, generating roundoff-precision identical output to the original code on adaptive-mesh grids, but nearly twice as fast at scales of hundreds to thousands of cores.

  16. How memory generates heterogeneous dynamics in temporal networks.

    PubMed

    Vestergaard, Christian L; Génois, Mathieu; Barrat, Alain

    2014-10-01

    Empirical temporal networks display strong heterogeneities in their dynamics, which profoundly affect processes taking place on these networks, such as rumor and epidemic spreading. Despite the recent wealth of data on temporal networks, little work has been devoted to the understanding of how such heterogeneities can emerge from microscopic mechanisms at the level of nodes and links. Here we show that long-term memory effects are present in the creation and disappearance of links in empirical networks. We thus consider a simple generative modeling framework for temporal networks able to incorporate these memory mechanisms. This allows us to study separately the role of each of these mechanisms in the emergence of heterogeneous network dynamics. In particular, we show analytically and numerically how heterogeneous distributions of contact durations, of intercontact durations, and of numbers of contacts per link emerge. We also study the individual effect of heterogeneities on dynamical processes, such as the paradigmatic susceptible-infected epidemic spreading model. Our results confirm in particular the crucial role of the distributions of intercontact durations and of the numbers of contacts per link. PMID:25375547

  17. Shadow correction in high dynamic range images for generating orthophotos

    NASA Astrophysics Data System (ADS)

    Suzuki, Hideo; Chikatsu, Hirofumi

    2011-07-01

    High dynamic range imagery is widely used in remote sensing. With the widespread use of aerial digital cameras such as the DMC, ADS40, RMK-D, and UltraCamD, high dynamic range imaging is generally expected for generating minuteness orthophotos in digital aerial photogrammetry. However, high dynamic range images (12-bit, 4,096 gray levels) are generally compressed into an 8-bit depth digital image (256 gray levels) owing to huge amount of data and interface with peripherals such as monitors and printers. This means that a great deal of image data is eliminated from the original image, and this introduces a new shadow problem. In particular, the influence of shadows in urban areas causes serious problems when generating minuteness orthophotos and performing house detection. Therefore, shadow problems can be solved by addressing the image compression problems. There is a large body of literature on image compression techniques such as logarithmic compression and tone mapping algorithms. However, logarithmic compression tends to cause loss of details in dark and/or light areas. Furthermore, the logarithmic method intends to operate on the full scene. This means that high-resolution luminance information can not be obtained. Even though tone mapping algorithms have the ability to operate over both full scene and local scene, background knowledge is required. To resolve the shadow problem in digital aerial photogrammetry, shadow areas should be recognized and corrected automatically without the loss of luminance information. To this end, a practical shadow correction method using 12-bit real data acquired by DMC is investigated in this paper.

  18. Stochastic-Dynamic Earthquake Models and Tsunami Generation

    NASA Astrophysics Data System (ADS)

    Oglesby, D. D.; Geist, E. L.

    2013-12-01

    Dynamic models are now understood to provide physically plausible faulting scenarios for ground motion prediction, but their use in tsunami hazard analysis is in its infancy. Typical tsunami model generation methods rely on kinematic or dislocation models of the earthquake source, in which the seismic moment, rupture path, and slip distribution are assumed a priori, typically based on models of prior earthquakes, aftershock distributions, and/or some sort of stochastic slip model. However, such models are not guaranteed to be consistent with any physically plausible faulting scenario and may span a range of parameter space far outside of what is physically realistic. In contrast, in dynamic models the earthquake rupture and slip process (including the final size of the earthquake, the spatiotemporal evolution of slip, and the rupture path on complex fault geometry) are calculated results of the models. Utilizing the finite element method, a self-affine stochastic stress field, and a shallow-water hydrodynamic code, we calculate a suite of dynamic slip models and near-source tsunamis from a megathrust/splay fault system motivated by the geometry in the Nankai region of Japan. Different stress realizations produce different spatial patterns of slip, including different partitioning between the megathrust and splay segments. Because the final moment from different stress realizations can differ, and because partitioning of slip between fault segments has a first-order effect on the surface deformation and tsunami generation, the modeled near-source tsunamis are also highly variable. Models whose stress amplitudes have been scaled to produce equivalent seismic moments (but with the same spatial variability and relative fault strength as the previous unscaled models) have less variability in tsunami amplitude in regions far from the fault, but greater variability in amplitude in the near-fault region.

  19. Dynamics of the Open Closed Field Line Boundary

    NASA Astrophysics Data System (ADS)

    Spanswick, E.; Roy, E.; Nishimura, T.; Unick, C.; Jackel, B. J.; Donovan, E.

    2015-12-01

    In most cases, large-scale features of the auroral distribution are the projection, along magnetic field lines, of corresponding magnetospheric features. The poleward boundary of the oval is a key example of such a feature. At almost all local times, this is most often interpreted as the ionospheric marker of the latitudinal transition between open lobe and closed central plasma sheet field lines. Earlier work by Blanchard et al. [J. Geophys. Res., 1995 & 1997] used ground-based photometric observations of 630 nm "redline" aurora and in situ particle observations from simultaneous DMSP overflights to demonstrate that the poleward boundary of the redline aurora is a particularly robust signature of the poleward boundary of the plasma sheet. Owing to the orbits of the DMSP spacecraft and the relative newness of the photometer program (CANOPUS) that provided the optical observations, the Blanchard results represent a limited sampling of magnetic local time and a limited number of events. In this paper we revisit the Blanchard et al study, using particle data from the NASA FAST satellite and the DMSP program, together with redline observations obtained by ground-based All-Sky Imagers. Our results indicate that the Blanchard technique for identifying the polar cap boundary holds true for essentially all magnetic local times on the night side, but that the picture is more nuanced than previously appreciated. Here we present these results, and discuss specific examples where the technique does not work (and explore why). Furthermore, this work is motivated by a new extensive network of highly sensitive redline imagers that has been deployed across northern and central Canada which provides high time resolution large-scale snapshots of the instantaneous polar cap boundary. This in turn enables us to explore magnetospheric dynamics at the interface between the lobe and central plasma sheet in fundamentally new and exciting ways.

  20. Excitation and dynamics of liquid tin micrometer droplet generation

    NASA Astrophysics Data System (ADS)

    Rollinger, B.; Abhari, R. S.

    2016-07-01

    The dynamics of capillary breakup-based droplet generation are studied for an excitation system based on a tunable piezoelectrically actuated oscillating piston, which generates acoustic pressure waves at the dispenser nozzle. First, the non-ideal pressure boundary conditions of droplet breakup are measured using a fast response pressure probe. A structural analysis shows that the axial modes of the excitation system are the main reasons for the resonance peaks in the pressure response. Second, a correlation between the nozzle inlet pressure and the droplet timing jitter is established with the help of experiments and a droplet formation model. With decreasing wave number, the growth rate of the main excitation decreases, while noise contributions with wave numbers with higher growth rates lead to a non-deterministic structure of the droplet train. A highly coherent and monodisperse droplet stream is obtained when the excitation system is tuned to generate high acoustic pressures at the desired operation frequency and when the noise level on the jet is limited. The jet velocity, hence droplet spacing for a set frequency is then adjusted by varying the reservoir pressure, according to the trade-off between lowest wave number and acceptable timing jitter.

  1. OPEN PROBLEM: Orbits' statistics in chaotic dynamical systems

    NASA Astrophysics Data System (ADS)

    Arnold, V.

    2008-07-01

    This paper shows how the measurement of the stochasticity degree of a finite sequence of real numbers, published by Kolmogorov in Italian in a journal of insurances' statistics, can be usefully applied to measure the objective stochasticity degree of sequences, originating from dynamical systems theory and from number theory. Namely, whenever the value of Kolmogorov's stochasticity parameter of a given sequence of numbers is too small (or too big), one may conclude that the conjecture describing this sequence as a sample of independent values of a random variables is highly improbable. Kolmogorov used this strategy fighting (in a paper in 'Doklady', 1940) against Lysenko, who had tried to disprove the classical genetics' law of Mendel experimentally. Calculating his stochasticity parameter value for the numbers from Lysenko's experiment reports, Kolmogorov deduced, that, while these numbers were different from the exact fulfilment of Mendel's 3 : 1 law, any smaller deviation would be a manifestation of the report's number falsification. The calculation of the values of the stochasticity parameter would be useful for many other generators of pseudorandom numbers and for many other chaotically looking statistics, including even the prime numbers distribution (discussed in this paper as an example).

  2. Coordinating the Commons: Diversity & Dynamics in Open Collaborations

    ERIC Educational Resources Information Center

    Morgan, Jonathan T.

    2013-01-01

    The success of Wikipedia demonstrates that open collaboration can be an effective model for organizing geographically-distributed volunteers to perform complex, sustained work at a massive scale. However, Wikipedia's history also demonstrates some of the challenges that large, long-term open collaborations face: the core community of Wikipedia…

  3. Weak decays of heavy hadrons into dynamically generated resonances

    DOE PAGESBeta

    Oset, Eulogio; Liang, Wei -Hong; Bayar, Melahat; Xie, Ju -Jun; Dai, Lian Rong; Albaladejo, Miguel; Nielsen, Marina; Sekihara, Takayasu; Navarra, Fernando; Roca, Luis; et al

    2016-01-28

    In this study, we present a review of recent works on weak decay of heavy mesons and baryons with two mesons, or a meson and a baryon, interacting strongly in the final state. The aim is to learn about the interaction of hadrons and how some particular resonances are produced in the reactions. It is shown that these reactions have peculiar features and act as filters for some quantum numbers which allow to identify easily some resonances and learn about their nature. The combination of basic elements of the weak interaction with the framework of the chiral unitary approach allowmore » for an interpretation of results of many reactions and add a novel information to different aspects of the hadron interaction and the properties of dynamically generated resonances.« less

  4. Knowledge-based zonal grid generation for computational fluid dynamics

    NASA Technical Reports Server (NTRS)

    Andrews, Alison E.

    1988-01-01

    Automation of flow field zoning in two dimensions is an important step towards reducing the difficulty of three-dimensional grid generation in computational fluid dynamics. Using a knowledge-based approach makes sense, but problems arise which are caused by aspects of zoning involving perception, lack of expert consensus, and design processes. These obstacles are overcome by means of a simple shape and configuration language, a tunable zoning archetype, and a method of assembling plans from selected, predefined subplans. A demonstration system for knowledge-based two-dimensional flow field zoning has been successfully implemented and tested on representative aerodynamic configurations. The results show that this approach can produce flow field zonings that are acceptable to experts with differing evaluation criteria.

  5. Force Generation, Polymerization Dynamics and Nucleation of Actin Filaments

    NASA Astrophysics Data System (ADS)

    Wang, Ruizhe

    We study force generation and actin filament dynamics using stochastic and deterministic methods. First, we treat force generation of bundled actin filaments by polymerization via molecular-level stochastic simulations. In the widely-used Brownian Ratchet model, actin filaments grow freely whenever the tip-obstacle gap created by thermal fluctuation exceeds the monomer size. We name this model the Perfect Brownian Ratchet (PBR) model. In the PBR model, actin monomer diffusion is treated implicitly. We perform a series of simulations based on the PBR, in which obstacle motion is treated explicitly; in most previous studies, obstacle motion has been treated implicitly. We find that the cooperativity of filaments is generally weak in the PBR model, meaning that more filaments would grow more slowly given the same force per filament. Closed-form formulas are also developed, which match the simulation results. These portable and accurate formulas provide guidance for experiments and upper and lower bounds for theoretical analyses. We also studied a variation of the PBR, called the Diffusing Brownian Ratchet (DBR) model, in which both actin monomer and obstacle diffusion are treated explicitly. We find that the growth rate of multiple filaments is even lower, compared with that in PBR. This finding challenges the widely-accepted PBR assumption and suggests that pushing the study of actin dynamics down to the sub-nanometer level yields new insights. We subsequently used a rate equation approach to model the effect of local depletion of actin monomers on the nucleation of actin filaments on biomimetic beads, and how the effect is regulated by capping protein (CP). We find that near the bead surface, a higher CP concentration increases local actin concentration, which leads to an enhanced activities of actin filaments' nucleation. Our model analysis matches the experimental results and lends support to an important but undervalued hypothesis proposed by Carlier and

  6. Coupled ice-ocean dynamics in the marginal ice zones Upwelling/downwelling and eddy generation

    NASA Technical Reports Server (NTRS)

    Hakkinen, S.

    1986-01-01

    This study is aimed at modeling mesoscale processes such as upwelling/downwelling and ice edge eddies in the marginal ice zones. A two-dimensional coupled ice-ocean model is used for the study. The ice model is coupled to the reduced gravity ocean model through interfacial stresses. The parameters of the ocean model were chosen so that the dynamics would be nonlinear. The model was tested by studying the dynamics of upwelling. Wings parallel to the ice edge with the ice on the right produce upwelling because the air-ice momentum flux is much greater than air-ocean momentum flux; thus the Ekman transport is greater than the ice than in the open water. The stability of the upwelling and downwelling jets is discussed. The downwelling jet is found to be far more unstable than the upwelling jet because the upwelling jet is stabilized by the divergence. The constant wind field exerted on a varying ice cover will generate vorticity leading to enhanced upwelling/downwelling regions, i.e., wind-forced vortices. Steepening and strengthening of vortices are provided by the nonlinear terms. When forcing is time-varying, the advection terms will also redistribute the vorticity. The wind reversals will separate the vortices from the ice edge, so that the upwelling enhancements are pushed to the open ocean and the downwelling enhancements are pushed underneath the ice.

  7. Free viewpoint image generation using multi-pass dynamic programming

    NASA Astrophysics Data System (ADS)

    Fukushima, Norishige; Yendo, Tomohiro; Fujii, Toshiaki; Tanimoto, Masayuki

    2007-02-01

    Ray-Space is categorized by Image-Based Rendering (IBR), thus generated views have photo-realistic quality. While this method has the performance of high quality imaging, this needs a lot of images or cameras. The reason why that is Ray-Space requires various direction's and position's views instead of 3D depth information. In this paper, we reduce that flood of information using view-centered ray interpolation. View-centered interpolation means estimating view dependent depth value (or disparity map) at generating view-point and interpolating that of pixel values using multi-view images and depth information. The combination of depth estimation and interpolation realizes the rendering photo-realistic images effectively. Unfortunately, however, if depth estimation is week or mistake, a lot of artifacts appear in creating images. Thus powerful depth estimation method is required. When we render the free viewpoint images video, we perform the depth estimation at every frame. Thus we want to keep a lid on computing cost. Our depth estimation method is based on dynamic programming (DP). This method optimizes and solves depth images at the weak matching area with high-speed performance. But scan-line noises become appeared because of the limit of DP. So, we perform the DP multi-direction pass and sum-up the result of multi-passed DPs. Our method fulfills the low computation cost and high depth estimation performance.

  8. Teachers' Performances during a Practical Dynamic Open Inquiry Process

    ERIC Educational Resources Information Center

    Zion, Michal; Schanin, Ilana; Shmueli, Ester Rimerman

    2013-01-01

    The research goal of this study was to determine whether teachers who participated in an inquiry-based course were able to internalize a dynamic open inquiry process. This study focused on 25 science teachers who participated in an annual inquiry-based academic course. Several teaching tools helped teachers employ an open inquiry process. We…

  9. MINE WASTE TECHNOLOGY PROGRAM PREVENTION OF ACID MINE DRAINAGE GENERATION FROM OPEN-PIT HIGHWALLS

    EPA Science Inventory

    This document summarizes the results of Mine Waste Technology Program Activity III, Project 26, Prevention of Acid Mine Drainage Generation from Open-Pit Highwalls. The intent of this project was to obtain performance data on the ability of four technologies to prevent the gener...

  10. The Evolution of Open Magnetic Flux Driven by Photospheric Dynamics

    NASA Technical Reports Server (NTRS)

    Linker, Jon A.; Lionello, Roberto; Mikic, Zoran; Titov, Viacheslav S.; Antiochos, Spiro K.

    2010-01-01

    The coronal magnetic field is of paramount importance in solar and heliospheric physics. Two profoundly different views of the coronal magnetic field have emerged. In quasi-steady models, the predominant source of open magnetic field is in coronal holes. In contrast, in the interchange model, the open magnetic flux is conserved, and the coronal magnetic field can only respond to the photospheric evolution via interchange reconnection. In this view the open magnetic flux diffuses through the closed, streamer belt fields, and substantial open flux is present in the streamer belt during solar minimum. However, Antiochos and co-workers, in the form of a conjecture, argued that truly isolated open flux cannot exist in a configuration with one heliospheric current sheet (HCS) - it will connect via narrow corridors to the polar coronal hole of the same polarity. This contradicts the requirements of the interchange model. We have performed an MHD simulation of the solar corona up to 20R solar to test both the interchange model and the Antiochos conjecture. We use a synoptic map for Carrington Rotation 1913 as the boundary condition for the model, with two small bipoles introduced into the region where a positive polarity extended coronal hole forms. We introduce flows at the photospheric boundary surface to see if open flux associated with the bipoles can be moved into the closed-field region. Interchange reconnection does occur in response to these motions. However, we find that the open magnetic flux cannot be simply injected into closed-field regions - the flux eventually closes down and disconnected flux is created. Flux either opens or closes, as required, to maintain topologically distinct open and closed field regions, with no indiscriminate mixing of the two. The early evolution conforms to the Antiochos conjecture in that a narrow corridor of open flux connects the portion of the coronal hole that is nearly detached by one of the bipoles. In the later evolution, a

  11. Open-Source Programming for Automated Generation of Graphene Raman Spectral Maps

    NASA Astrophysics Data System (ADS)

    Vendola, P.; Blades, M.; Pierre, W.; Jedlicka, S.; Rotkin, S. V.

    Raman microscopy is a useful tool for studying the structural characteristics of graphene deposited onto substrates. However, extracting useful information from the Raman spectra requires data processing and 2D map generation. An existing home-built confocal Raman microscope was optimized for graphene samples and programmed to automatically generate Raman spectral maps across a specified area. In particular, an open source data collection scheme was generated to allow the efficient collection and analysis of the Raman spectral data for future use. NSF ECCS-1509786.

  12. Migraine generator network and spreading depression dynamics as neuromodulation targets in episodic migraine

    NASA Astrophysics Data System (ADS)

    Dahlem, Markus A.

    2013-12-01

    Migraine is a common disabling headache disorder characterized by recurrent episodes sometimes preceded or accompanied by focal neurological symptoms called aura. The relation between two subtypes, migraine without aura (MWoA) and migraine with aura (MWA), is explored with the aim to identify targets for neuromodulation techniques. To this end, a dynamically regulated control system is schematically reduced to a network of the trigeminal nerve, which innervates the cranial circulation, an associated descending modulatory network of brainstem nuclei, and parasympathetic vasomotor efferents. This extends the idea of a migraine generator region in the brainstem to a larger network and is still simple and explicit enough to open up possibilities for mathematical modeling in the future. In this study, it is suggested that the migraine generator network (MGN) is driven and may therefore respond differently to different spatio-temporal noxious input in the migraine subtypes MWA and MWoA. The noxious input is caused by a cortical perturbation of homeostasis, known as spreading depression (SD). The MGN might even trigger SD in the first place by a failure in vasomotor control. As a consequence, migraine is considered as an inherently dynamical disease to which a linear course from upstream to downstream events would not do justice. Minimally invasive and noninvasive neuromodulation techniques are briefly reviewed and their rational is discussed in the context of the proposed mechanism.

  13. Parallel cascade selection molecular dynamics (PaCS-MD) to generate conformational transition pathway

    NASA Astrophysics Data System (ADS)

    Harada, Ryuhei; Kitao, Akio

    2013-07-01

    Parallel Cascade Selection Molecular Dynamics (PaCS-MD) is proposed as a molecular simulation method to generate conformational transition pathway under the condition that a set of "reactant" and "product" structures is known a priori. In PaCS-MD, the cycle of short multiple independent molecular dynamics simulations and selection of the structures close to the product structure for the next cycle are repeated until the simulated structures move sufficiently close to the product. Folding of 10-residue mini-protein chignolin from the extended to native structures and open-close conformational transition of T4 lysozyme were investigated by PaCS-MD. In both cases, tens of cycles of 100-ps MD were sufficient to reach the product structures, indicating the efficient generation of conformational transition pathway in PaCS-MD with a series of conventional MD without additional external biases. Using the snapshots along the pathway as the initial coordinates, free energy landscapes were calculated by the combination with multiple independent umbrella samplings to statistically elucidate the conformational transition pathways.

  14. Dynamic headspace generation and quantitation of triacetone triperoxide vapor.

    PubMed

    Giordano, Braden C; Lubrano, Adam L; Field, Christopher R; Collins, Greg E

    2014-02-28

    Two methods for quantitation of triacetone triperoxide (TATP) vapor using a programmable temperature vaporization (PTV) inlet coupled to a gas chromatography/mass spectrometer (GC/MS) have been demonstrated. The dynamic headspace of bulk TATP was mixed with clean humid air to produce a TATP vapor stream. Sampling via a heated transfer line to a PTV inlet with a Tenax-TA™ filled liner allowed for direct injection of the vapor stream to a GC/MS for vapor quantitation. TATP was extracted from the vapor stream and subsequently desorbed from the PTV liner for splitless injection on the GC column. Calibration curves were prepared using solution standards with a standard split/splitless GC inlet for quantitation of the TATP vapor. Alternatively, vapor was sampled onto a Tenax-TA™ sample tube and placed into a thermal desorption system. In this instance, vapor was desorbed from the tube and subsequently trapped on a liquid nitrogen cooled PTV inlet. Calibration curves for this method were prepared from direct liquid injection of standards onto samples tube with the caveat that a vacuum is applied to the tube during deposition to ensure that the volatile TATP penetrates into the tube. Vapor concentration measurements, as determined by either GC/MS analysis or mass gravimetry of the bulk TATP, were statistically indistinguishable. Different approaches to broaden the TATP vapor dynamic range, including diluent air flow, sample chamber temperature, sample vial orifice size, and sample size are discussed. Vapor concentrations between 50 and 5400ngL(-1) are reported, with stable vapor generation observed for as long as 60 consecutive hours. PMID:24508355

  15. Open Automated Demand Response Technologies for Dynamic Pricing and Smart Grid

    SciTech Connect

    Ghatikar, Girish; Mathieu, Johanna L.; Piette, Mary Ann; Kiliccote, Sila

    2010-06-02

    We present an Open Automated Demand Response Communications Specifications (OpenADR) data model capable of communicating real-time prices to electricity customers. We also show how the same data model could be used to for other types of dynamic pricing tariffs (including peak pricing tariffs, which are common throughout the United States). Customers participating in automated demand response programs with building control systems can respond to dynamic prices by using the actual prices as inputs to their control systems. Alternatively, prices can be mapped into"building operation modes," which can act as inputs to control systems. We present several different strategies customers could use to map prices to operation modes. Our results show that OpenADR can be used to communicate dynamic pricing within the Smart Grid and that OpenADR allows for interoperability with existing and future systems, technologies, and electricity markets.

  16. Nonequilibrium dynamics of laser-generated plasma channels

    NASA Astrophysics Data System (ADS)

    Petrova, Tz. B.; Ladouceur, H. D.; Baronavski, A. P.

    2008-05-01

    A time-dependent nonequilibrium kinetics model based upon the time-dependent electron Boltzmann equation coupled with an extensive air chemistry model accounting for gas heating and vibrational kinetics is developed. The model is applied to the temporal evolution of femtosecond laser-generated air plasma channels at atmospheric pressure in an external electric field. The plasma channel dynamics depend upon the initial free electron density, the initial electron energy of the plasma, and upon the externally applied electric field strength. The model predicts an electric breakdown field strength of 5-10kV/cm with a delay time of hundreds of nanoseconds when the electron density drops to the optimum value of ˜1012-1013cm-3. The experimentally observed breakdown field is ˜5.7kV/cm with a statistical breakdown delay time of ˜200ns. The reduction in the breakdown field strength in natural air from ˜30to5kV/cm is attributed to a combination of processes such as enhanced ionization due to relaxation of the initial electron energy distribution function toward a Maxwellian distribution, strong electron detachment, and gas heating. The calculated electron density decay of the laser-generated plasma channel in both pure nitrogen and dry air is in good agreement with the NRL experiments. The derived rate constant for recombination in dry air is bBair=3.9×10-8cm3s-1 and in pure nitrogen it is bBN2=4.4×10-8cm3s-1. The attachment rate coefficient in dry air is ηBair=7.5×106s-1.

  17. Dynamic simulation and safety evaluation of high-speed trains meeting in open air

    NASA Astrophysics Data System (ADS)

    Li, Songyan; Zheng, Zhijun; Yu, Jilin; Qian, Chunqiang

    2015-08-01

    Dynamic responses of a carriage under excitation with the German high-speed low-interference track spectrum together with the air pressure pulse generated as high-speed trains passing each other are investigated with a multi-body dynamics method. The variations of degrees of freedom (DOFs: horizontal movement, roll angle, and yaw angle), the lateral wheel-rail force, the derailment coefficient, and the rate of wheel load reduction with time when two carriages meet in open air are obtained and compared with the results of a single train travelling at specified speeds. Results show that the rate of wheel load reduction increases with the increase of train speed and meets some safety standard at a certain speed, but exceeding the value of the rate of wheel load reduction does not necessarily mean derailment. The evaluation standard of the rate of wheel load reduction is somewhat conservative and may be loosened. The pressure pulse has significant effects on the train DOFs, and the evaluations of these safety indexes are strongly suggested in practice. The pressure pulse has a limited effect on the derailment coefficient and the lateral wheel-rail force, and, thus, their further evaluations may be not necessary.

  18. Dynamic simulation and safety evaluation of high-speed trains meeting in open air

    NASA Astrophysics Data System (ADS)

    Li, Songyan; Zheng, Zhijun; Yu, Jilin; Qian, Chunqiang

    2016-04-01

    Dynamic responses of a carriage under excitation with the German high-speed low-interference track spectrum together with the air pressure pulse generated as high-speed trains passing each other are investigated with a multi-body dynamics method. The variations of degrees of freedom (DOFs: horizontal movement, roll angle, and yaw angle), the lateral wheel-rail force, the derailment coefficient, and the rate of wheel load reduction with time when two carriages meet in open air are obtained and compared with the results of a single train travelling at specified speeds. Results show that the rate of wheel load reduction increases with the increase of train speed and meets some safety standard at a certain speed, but exceeding the value of the rate of wheel load reduction does not necessarily mean derailment. The evaluation standard of the rate of wheel load reduction is somewhat conservative and may be loosened. The pressure pulse has significant effects on the train DOFs, and the evaluations of these safety indexes are strongly suggested in practice. The pressure pulse has a limited effect on the derailment coefficient and the lateral wheel-rail force, and, thus, their further evaluations may be not necessary.

  19. Comparison of petroleum generation kinetics by isothermal hydrous and nonisothermal open-system pyrolysis

    USGS Publications Warehouse

    Lewan, M.D.; Ruble, T.E.

    2002-01-01

    This study compares kinetic parameters determined by open-system pyrolysis and hydrous pyrolysis using aliquots of source rocks containing different kerogen types. Kinetic parameters derived from these two pyrolysis methods not only differ in the conditions employed and products generated, but also in the derivation of the kinetic parameters (i.e., isothermal linear regression and non-isothermal nonlinear regression). Results of this comparative study show that there is no correlation between kinetic parameters derived from hydrous pyrolysis and open-system pyrolysis. Hydrous-pyrolysis kinetic parameters determine narrow oil windows that occur over a wide range of temperatures and depths depending in part on the organic-sulfur content of the original kerogen. Conversely, open-system kinetic parameters determine broad oil windows that show no significant differences with kerogen types or their organic-sulfur contents. Comparisons of the kinetic parameters in a hypothetical thermal-burial history (2.5 ??C/my) show open-system kinetic parameters significantly underestimate the extent and timing of oil generation for Type-US kerogen and significantly overestimate the extent and timing of petroleum formation for Type-I kerogen compared to hydrous pyrolysis kinetic parameters. These hypothetical differences determined by the kinetic parameters are supported by natural thermal-burial histories for the Naokelekan source rock (Type-IIS kerogen) in the Zagros basin of Iraq and for the Green River Formation (Type-I kerogen) in the Uinta basin of Utah. Differences in extent and timing of oil generation determined by open-system pyrolysis and hydrous pyrolysis can be attributed to the former not adequately simulating natural oil generation conditions, products, and mechanisms.

  20. Dynamic conversion of solar generated heat to electricity

    NASA Technical Reports Server (NTRS)

    Powell, J. C.; Fourakis, E.; Hammer, J. M.; Smith, G. A.; Grosskreutz, J. C.; Mcbride, E.

    1974-01-01

    The effort undertaken during this program led to the selection of the water-superheated steam (850 psig/900 F) crescent central receiver as the preferred concept from among 11 candidate systems across the technological spectrum of the dynamic conversion of solar generated heat to electricity. The solar power plant designs were investigated in the range of plant capacities from 100 to 1000 Mw(e). The investigations considered the impacts of plant size, collector design, feed-water temperature ratio, heat rejection equipment, ground cover, and location on solar power technical and economic feasibility. For the distributed receiver systems, the optimization studies showed that plant capacities less than 100 Mw(e) may be best. Although the size of central receiver concepts was not parametrically investigated, all indications are that the optimal plant capacity for central receiver systems will be in the range from 50 to 200 Mw(e). Solar thermal power plant site selection criteria and methodology were also established and used to evaluate potentially suitable sites. The result of this effort was to identify a site south of Inyokern, California, as typically suitable for a solar thermal power plant. The criteria used in the selection process included insolation and climatological characteristics, topography, and seismic history as well as water availability.

  1. Fermion flavor mixing in models with dynamical mass generation

    SciTech Connect

    Benes, Petr

    2010-03-15

    We present a model-independent method of dealing with fermion flavor mixing in the case when instead of constant, momentum-independent mass matrices one has rather momentum-dependent self-energies. This situation is typical for strongly coupled models of dynamical fermion mass generation. We demonstrate our approach on the example of quark mixing. We show that quark self-energies with a generic momentum dependence lead to an effective Cabibbo-Kobayashi-Maskawa matrix, which turns out to be in general nonunitary, in accordance with previous claims of other authors, and to nontrivial flavor changing electromagnetic and neutral currents. We also discuss some conceptual consequences of the momentum-dependent self-energies and show that in such a case the interaction basis and the mass basis are not related by a unitary transformation. In fact, we argue that the latter is merely an effective concept, in a specified sense. While focusing mainly on the fermionic self-energies, we also study the effects of momentum-dependent radiative corrections to the gauge bosons and to the proper vertices. Our approach is based on an application of the Lehmann-Symanzik-Zimmermann reduction formula and for the special case of constant self-energies it gives the same results as the standard approach based on the diagonalization of mass matrices.

  2. Dynamic airspace configuration algorithms for next generation air transportation system

    NASA Astrophysics Data System (ADS)

    Wei, Jian

    The National Airspace System (NAS) is under great pressure to safely and efficiently handle the record-high air traffic volume nowadays, and will face even greater challenge to keep pace with the steady increase of future air travel demand, since the air travel demand is projected to increase to two to three times the current level by 2025. The inefficiency of traffic flow management initiatives causes severe airspace congestion and frequent flight delays, which cost billions of economic losses every year. To address the increasingly severe airspace congestion and delays, the Next Generation Air Transportation System (NextGen) is proposed to transform the current static and rigid radar based system to a dynamic and flexible satellite based system. New operational concepts such as Dynamic Airspace Configuration (DAC) have been under development to allow more flexibility required to mitigate the demand-capacity imbalances in order to increase the throughput of the entire NAS. In this dissertation, we address the DAC problem in the en route and terminal airspace under the framework of NextGen. We develop a series of algorithms to facilitate the implementation of innovative concepts relevant with DAC in both the en route and terminal airspace. We also develop a performance evaluation framework for comprehensive benefit analyses on different aspects of future sector design algorithms. First, we complete a graph based sectorization algorithm for DAC in the en route airspace, which models the underlying air route network with a weighted graph, converts the sectorization problem into the graph partition problem, partitions the weighted graph with an iterative spectral bipartition method, and constructs the sectors from the partitioned graph. The algorithm uses a graph model to accurately capture the complex traffic patterns of the real flights, and generates sectors with high efficiency while evenly distributing the workload among the generated sectors. We further improve

  3. Study of a possible S = + 1 dynamically generated baryonic resonance

    NASA Astrophysics Data System (ADS)

    Sarkar, Sourav; Oset, E.; Vicente Vacas, M. J.

    2005-05-01

    Starting from the lowest-order chiral Lagrangian for the interaction of the baryon decuplet with the octet of pseudoscalar mesons we find an attractive interaction in the ΔK channel with L = 0 and I = 1, while the interaction is repulsive for I = 2. The attractive interaction leads to a pole in the second Riemann sheet of the complex plane and manifests itself in a large strength of the ΔK scattering amplitude close to the ΔK threshold, which is not the case for I = 2. However, we also make a study of uncertainties in the model and conclude that the existence of this pole depends sensitively upon the input used and can disappear within reasonable variations of the input parameters. We take advantage to study the stability of the other poles obtained for the {{3}/{2}}- dynamically generated resonances of the model and conclude that they are stable and not contingent to reasonable changes in the input of the theory.

  4. Characterization of open-cycle coal-fired MHD generators. 16th quarterly technical progress report, December 16, 1980-March 31, 1981

    SciTech Connect

    Wormhoudt, J.; Yousefian, V.; Weinberg, M.; Kolb, C.; Martinez-Sanchez, M.; Cheng, W.; Dvore, D.; Freedman, A.; Stanton, A.; Stewart, G.

    1981-05-01

    The successful design of full-scale, open-cycle, coal-fired MHD generators for baseload electrical production requires a detailed understanding of the plasma chemical and plasma dynamic characteristics of anticipated combustor and channel fluids. Progress in efforts to model the efficiency of an open-cycle, coal-fired MHD channel based on the characterization of the channel flow as well as laboratory experiments to validate the modeling effort is reported. In addition, studies related to understanding arcing and corrosion phenomena in the vicinity of an anode are reported.

  5. Characterization of open-cycle coal-fired MHD generators. 14th/15th quarterly technical progress report, February 1-July 31, 1980

    SciTech Connect

    Wormhoudt, J.; Yousefian, V.; Weinberg, M.; Kolb, C.; Martinez-Sanchez, M.; Cheng, W.; Bien, F.; Dvore, D.; Unkel, W.; Stewart, G.

    1980-09-01

    The successful design of full-scale, open-cycle, coal-fired MHD generators for baseload electrical production requires a detailed understanding of the plasma chemical and plasma dynamic characteristics of anticipated combustor and channel fluids. Progress in efforts to model the efficiency of an open-cycle, coal-fired MHD channel based on the characterization of the channel flow as well as laboratory experiments to validate the modeling effort as detailed. In addition, studies related to understanding arcing phenomena in the vicinity of an anode are reported.

  6. Web-based Toolkit for Dynamic Generation of Data Processors

    NASA Astrophysics Data System (ADS)

    Patel, J.; Dascalu, S.; Harris, F. C.; Benedict, K. K.; Gollberg, G.; Sheneman, L.

    2011-12-01

    All computation-intensive scientific research uses structured datasets, including hydrology and all other types of climate-related research. When it comes to testing their hypotheses, researchers might use the same dataset differently, and modify, transform, or convert it to meet their research needs. Currently, many researchers spend a good amount of time performing data processing and building tools to speed up this process. They might routinely repeat the same process activities for new research projects, spending precious time that otherwise could be dedicated to analyzing and interpreting the data. Numerous tools are available to run tests on prepared datasets and many of them work with datasets in different formats. However, there is still a significant need for applications that can comprehensively handle data transformation and conversion activities and help prepare the various processed datasets required by the researchers. We propose a web-based application (a software toolkit) that dynamically generates data processors capable of performing data conversions, transformations, and customizations based on user-defined mappings and selections. As a first step, the proposed solution allows the users to define various data structures and, in the next step, can select various file formats and data conversions for their datasets of interest. In a simple scenario, the core of the proposed web-based toolkit allows the users to define direct mappings between input and output data structures. The toolkit will also support defining complex mappings involving the use of pre-defined sets of mathematical, statistical, date/time, and text manipulation functions. Furthermore, the users will be allowed to define logical cases for input data filtering and sampling. At the end of the process, the toolkit is designed to generate reusable source code and executable binary files for download and use by the scientists. The application is also designed to store all data

  7. Self-generated overvoltages due to open-phasing of ungrounded-wye delta transformer banks

    SciTech Connect

    Walling, R.A.; Hartana, R.K.; Ros, W.J.

    1994-12-31

    Disconnecting one phase of an ungrounded-wye delta transformer bank from the source can result in severe overvoltages due to neutral shift and ferroresonance. Neutral shift overvoltages are quantified and their impact on metal-oxide surge arresters are evaluated. Ferroresonance is shown by test data to occur when low-loss banks, 15 kV and higher, are open phased. Design and operating practices to eliminate or mitigate these self-generated overvoltages are discussed.

  8. Self-generated overvoltages due to open-phasing of ungrounded-wye delta transformer banks

    SciTech Connect

    Walling, R.A.; Hartana, R.K.; Ros, W.J.

    1995-01-01

    Disconnecting one phase of an ungrounded-wye delta transformer bank from the source can result In severe overvoltages due to neutral shirt and ferroresonance. Neutral shirt overvoltages are quantified and their Impact on metal-oxide surge arresters are evaluated. Ferroresonance is shown by test data to occur when low-loss banks, 15 kV and higher, are open phased. Design and operating practices to eliminate or mitigate these self-generated overvoltages are discussed.

  9. NGSView: an extensible open source editor for next-generation sequencing data

    PubMed Central

    Arner, Erik; Hayashizaki, Yoshihide; Daub, Carsten O.

    2010-01-01

    Summary:High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface. NGSView is available under an open source license and can be extended through a well documented API. Availability: http://ngsview.sourceforge.net Contact: arner@gsc.riken.jp PMID:19855106

  10. Definition phase for thermal ion dynamics experiment for OPEN

    NASA Technical Reports Server (NTRS)

    Sharp, W. E.

    1985-01-01

    The Thermal Ion Dynamics Experiment (TIDE) combines differential measurements of angle, energy, and mass to determine the detailed distribution function of low energy magnetospheric ions in the range of 0 to 100 eV. Goals included designing a 1 sq cm entrance aperture, minimizing trajectory divergence at exist aperture, and minimizing internal scattering. Design parameters were used to construct the test model.

  11. Asymmetric exclusion process with a dynamic roadblock and open boundaries

    NASA Astrophysics Data System (ADS)

    Sahoo, Mamata; Klumpp, Stefan

    2016-08-01

    Motivated by complex transport processes occurring in nature, we study a totally asymmetric simple exclusion process (TASEP) with a dynamic ‘roadblock’ particle. The roadblock particle blocks the traffic of moving particles while bound to the lattice, but can stochastically unbind or switch off, thus enabling the traffic to pass. We use simulations to study the dependence of the particle flux on the on/off switching dynamics of the roadblock, which exhibits a surprisingly rich dynamic behaviour. In particular, unlike in other studied TASEP variants with defects, here we observe that the particle flux is affected by the roadblock even in the initiation-limited or low density phase if the roadblock dynamics is slow. Rapid switching off the roadblock results in the typical behaviour of a TASEP with a defect/pause with reduced maximal current, but no effect of the roadblock on the flux in the initiation-limited phase. Moreover, in an intermediate range of roadblock rates, the particle current is found to be system-size dependent.

  12. Dynamic federations: storage aggregation using open tools and protocols

    NASA Astrophysics Data System (ADS)

    Furano, Fabrizio; Brito da Rocha, Ricardo; Devresse, Adrien; Keeble, Oliver; Álvarez Ayllón, Alejandro; Fuhrmann, Patrick

    2012-12-01

    A number of storage elements now offer standard protocol interfaces like NFS 4.1/pNFS and WebDAV, for access to their data repositories, in line with the standardization effort of the European Middleware Initiative (EMI). Also the LCG FileCatalogue (LFC) can offer such features. Here we report on work that seeks to exploit the federation potential of these protocols and build a system that offers a unique view of the storage and metadata ensemble and the possibility of integration of other compatible resources such as those from cloud providers. The challenge, here undertaken by the providers of dCache and DPM, and pragmatically open to other Grid and Cloud storage solutions, is to build such a system while being able to accommodate name translations from existing catalogues (e.g. LFCs), experiment-based metadata catalogues, or stateless algorithmic name translations, also known as “trivial file catalogues”. Such so-called storage federations of standard protocols-based storage elements give a unique view of their content, thus promoting simplicity in accessing the data they contain and offering new possibilities for resilience and data placement strategies. The goal is to consider HTTP and NFS4.1-based storage elements and metadata catalogues and make them able to cooperate through an architecture that properly feeds the redirection mechanisms that they are based upon, thus giving the functionalities of a “loosely coupled” storage federation. One of the key requirements is to use standard clients (provided by OS'es or open source distributions, e.g. Web browsers) to access an already aggregated system; this approach is quite different from aggregating the repositories at the client side through some wrapper API, like for instance GFAL, or by developing new custom clients. Other technical challenges that will determine the success of this initiative include performance, latency and scalability, and the ability to create worldwide storage federations that

  13. Pore opening dynamics in the exocytosis of serotonin

    NASA Astrophysics Data System (ADS)

    Ramirez-Santiago, Guillermo; Cercos, Montserrat G.; Martinez-Valencia, Alejandro; Salinas Hernandez, Israel; Rodríguez-Sosa, Leonardo; de-Miguel, Francisco F.

    2015-03-01

    The current view of the exocytosis of transmitter molecules is that it starts with the formation of a fusion pore that connects the intravesicular and the extracellular spaces, and is completed by the release of the rest of the transmitter contained in the vesicle upon the full fusion and collapse of the vesicle with the plasma membrane. However, under certain circumstances, a rapid closure of the pore before the full vesicle fusion produces only a partial release of the transmitter. Here we show that whole release of the transmitter occurs through fusion pores that remain opened for tens of milliseconds without vesicle collapse. This was demonstrated through amperometric measurements of serotonin release from electrodense vesicles in the axon of leech Retzius neurons and mathematical modelling. By modeling transmitter release with a diffusion equation subjected to boundary conditions that are defined by the experiment, we showed that those pores with a fast half rise time constant remained opened and allowed the full quantum release without vesicle collapse, whereas pores with a slow rise time constant closed rapidly, thus producing partial release. We conclude that a full transmitter release may occur through the fusion pore in the absence of vesicle collapse. This work was founded by a DGAPA-UNAM grants IN200914 and IN118410 CONACYT GRANT 130031, and CONACyT doctoral fellowships.

  14. Dynamic Simulation over Long Time Periods with 100% Solar Generation.

    SciTech Connect

    Concepcion, Ricky James; Elliott, Ryan Thomas

    2015-12-01

    This project aimed to identify the path forward for dynamic simulation tools to accommodate these needs by characterizing the properties of power systems (with high PV penetration), analyzing how these properties affect dynamic simulation software, and offering solutions for potential problems.

  15. Dynamical Interactions Make Hot Jupiters in Open Star Clusters

    NASA Astrophysics Data System (ADS)

    Shara, Michael M.; Hurley, Jarrod R.; Mardling, Rosemary A.

    2016-01-01

    Explaining the origin and evolution of exoplanetary hot Jupiters remains a significant challenge. One possible mechanism for the production of hot Jupiters is planet-planet interactions, which produce them from planets born far from their host stars but near their dynamical stability limits. In the much more likely case of planets born far from their dynamical stability limits, can hot Jupiters be formed in star clusters? Our N-body simulations answer this question in the affirmative, and show that hot Jupiter formation is not a rare event, occurring in ˜1% of star cluster planetary systems. We detail three case studies of the dynamics-induced births of hot Jupiters on highly eccentric orbits that can only occur inside star clusters. The hot Jupiters’ orbits bear remarkable similarities to those of some of the most extreme exoplanets known: HAT-P-32b, HAT-P-2b, HD 80606b, and GJ 876d. If stellar perturbations formed these hot Jupiters, then our simulations predict that these very hot inner planets are often accompanied by much more distant gas giants in highly eccentric orbits.

  16. A Tesla-pulse forming line-plasma opening switch pulsed power generator.

    PubMed

    Novac, B M; Kumar, R; Smith, I R

    2010-10-01

    A pulsed power generator based on a high-voltage Tesla transformer which charges a 3.85 Ω/55 ns water-filled pulse forming line to 300 kV has been developed at Loughborough University as a training tool for pulsed power students. The generator uses all forms of insulation specific to pulsed power technology, liquid (oil and water), gas (SF(6)), and magnetic insulation in vacuum, and a number of fast voltage and current sensors are implemented for diagnostic purposes. A miniature (centimeter-size) plasma opening switch has recently been coupled to the output of the pulse forming line, with the overall system comprising the first phase of a program aimed at the development of a novel repetitive, table-top generator capable of producing 15 GW pulses for high power microwave loads. Technical details of all the generator components and the main experimental results obtained during the program and demonstrations of their performance are presented in the paper, together with a description of the various diagnostic tools involved. In particular, it is shown that the miniature plasma opening switch is capable of reducing the rise time of the input current while significantly increasing the load power. Future plans are outlined in the conclusions. PMID:21034107

  17. A Tesla-pulse forming line-plasma opening switch pulsed power generator

    NASA Astrophysics Data System (ADS)

    Novac, B. M.; Kumar, R.; Smith, I. R.

    2010-10-01

    A pulsed power generator based on a high-voltage Tesla transformer which charges a 3.85 Ω/55 ns water-filled pulse forming line to 300 kV has been developed at Loughborough University as a training tool for pulsed power students. The generator uses all forms of insulation specific to pulsed power technology, liquid (oil and water), gas (SF6), and magnetic insulation in vacuum, and a number of fast voltage and current sensors are implemented for diagnostic purposes. A miniature (centimeter-size) plasma opening switch has recently been coupled to the output of the pulse forming line, with the overall system comprising the first phase of a program aimed at the development of a novel repetitive, table-top generator capable of producing 15 GW pulses for high power microwave loads. Technical details of all the generator components and the main experimental results obtained during the program and demonstrations of their performance are presented in the paper, together with a description of the various diagnostic tools involved. In particular, it is shown that the miniature plasma opening switch is capable of reducing the rise time of the input current while significantly increasing the load power. Future plans are outlined in the conclusions.

  18. Global Dynamic Exposure and the OpenBuildingMap

    NASA Astrophysics Data System (ADS)

    Schorlemmer, D.; Beutin, T.; Hirata, N.; Hao, K. X.; Wyss, M.; Cotton, F.; Prehn, K.

    2015-12-01

    Detailed understanding of local risk factors regarding natural catastrophes requires in-depth characterization of the local exposure. Current exposure capture techniques have to find the balance between resolution and coverage. We aim at bridging this gap by employing a crowd-sourced approach to exposure capturing focusing on risk related to earthquake hazard. OpenStreetMap (OSM), the rich and constantly growing geographical database, is an ideal foundation for us. More than 2.5 billion geographical nodes, more than 150 million building footprints (growing by ~100'000 per day), and a plethora of information about school, hospital, and other critical facility locations allow us to exploit this dataset for risk-related computations. We will harvest this dataset by collecting exposure and vulnerability indicators from explicitly provided data (e.g. hospital locations), implicitly provided data (e.g. building shapes and positions), and semantically derived data, i.e. interpretation applying expert knowledge. With this approach, we can increase the resolution of existing exposure models from fragility classes distribution via block-by-block specifications to building-by-building vulnerability. To increase coverage, we will provide a framework for collecting building data by any person or community. We will implement a double crowd-sourced approach to bring together the interest and enthusiasm of communities with the knowledge of earthquake and engineering experts. The first crowd-sourced approach aims at collecting building properties in a community by local people and activists. This will be supported by tailored building capture tools for mobile devices for simple and fast building property capturing. The second crowd-sourced approach involves local experts in estimating building vulnerability that will provide building classification rules that translate building properties into vulnerability and exposure indicators as defined in the Building Taxonomy 2.0 developed

  19. On the generation of flight dynamics aerodynamic tables by computational fluid dynamics

    NASA Astrophysics Data System (ADS)

    Da Ronch, A.; Ghoreyshi, M.; Badcock, K. J.

    2011-11-01

    An approach for the generation of aerodynamic tables using computational fluid dynamics is discussed. For aircraft flight dynamics, forces and moments are often tabulated in multi-dimensional look-up tables, requiring a large number of calculations to fill the tables. A method to efficiently reduce the number of high-fidelity analyses is reviewed. The method uses a kriging-based surrogate model. Low-fidelity (computationally cheap) estimates are augmented with higher fidelity data. Data fusion combines the two datasets into one single database. The approach can also handle changes in aircraft geometry. Once constructed, the look-up tables can be used in real-time to fly the aircraft through the database. To demonstrate the capabilities of the framework presented, five test cases are considered. These include a transonic cruiser concept design, an unconventional configuration, two passenger jet aircraft, and a jet trainer aircraft. Investigations into the areas of flight handling qualities, stability and control characteristics and manoeuvring aircraft are made. To assess the accuracy of the simulations, numerical results are also compared with wind tunnel and flight test data.

  20. Using Open Geographic Data to Generate Natural Language Descriptions for Hydrological Sensor Networks.

    PubMed

    Molina, Martin; Sanchez-Soriano, Javier; Corcho, Oscar

    2015-01-01

    Providing descriptions of isolated sensors and sensor networks in natural language, understandable by the general public, is useful to help users find relevant sensors and analyze sensor data. In this paper, we discuss the feasibility of using geographic knowledge from public databases available on the Web (such as OpenStreetMap, Geonames, or DBpedia) to automatically construct such descriptions. We present a general method that uses such information to generate sensor descriptions in natural language. The results of the evaluation of our method in a hydrologic national sensor network showed that this approach is feasible and capable of generating adequate sensor descriptions with a lower development effort compared to other approaches. In the paper we also analyze certain problems that we found in public databases (e.g., heterogeneity, non-standard use of labels, or rigid search methods) and their impact in the generation of sensor descriptions. PMID:26151211

  1. Using Open Geographic Data to Generate Natural Language Descriptions for Hydrological Sensor Networks

    PubMed Central

    Molina, Martin; Sanchez-Soriano, Javier; Corcho, Oscar

    2015-01-01

    Providing descriptions of isolated sensors and sensor networks in natural language, understandable by the general public, is useful to help users find relevant sensors and analyze sensor data. In this paper, we discuss the feasibility of using geographic knowledge from public databases available on the Web (such as OpenStreetMap, Geonames, or DBpedia) to automatically construct such descriptions. We present a general method that uses such information to generate sensor descriptions in natural language. The results of the evaluation of our method in a hydrologic national sensor network showed that this approach is feasible and capable of generating adequate sensor descriptions with a lower development effort compared to other approaches. In the paper we also analyze certain problems that we found in public databases (e.g., heterogeneity, non-standard use of labels, or rigid search methods) and their impact in the generation of sensor descriptions. PMID:26151211

  2. Molecular dynamics study of the opening mechanism for DNA polymerase I.

    PubMed

    Miller, Bill R; Parish, Carol A; Wu, Eugene Y

    2014-12-01

    During DNA replication, DNA polymerases follow an induced fit mechanism in order to rapidly distinguish between correct and incorrect dNTP substrates. The dynamics of this process are crucial to the overall effectiveness of catalysis. Although X-ray crystal structures of DNA polymerase I with substrate dNTPs have revealed key structural states along the catalytic pathway, solution fluorescence studies indicate that those key states are populated in the absence of substrate. Herein, we report the first atomistic simulations showing the conformational changes between the closed, open, and ajar conformations of DNA polymerase I in the binary (enzyme:DNA) state to better understand its dynamics. We have applied long time-scale, unbiased molecular dynamics to investigate the opening process of the fingers domain in the absence of substrate for B. stearothermophilis DNA polymerase in silico. These simulations are biologically and/or physiologically relevant as they shed light on the transitions between states in this important enzyme. All closed and ajar simulations successfully transitioned into the fully open conformation, which is known to be the dominant binary enzyme-DNA conformation from solution and crystallographic studies. Furthermore, we have detailed the key stages in the opening process starting from the open and ajar crystal structures, including the observation of a previously unknown key intermediate structure. Four backbone dihedrals were identified as important during the opening process, and their movements provide insight into the recognition of dNTP substrate molecules by the polymerase binary state. In addition to revealing the opening mechanism, this study also demonstrates our ability to study biological events of DNA polymerase using current computational methods without biasing the dynamics. PMID:25474643

  3. Generalized Langevin equation: An efficient approach to nonequilibrium molecular dynamics of open systems

    NASA Astrophysics Data System (ADS)

    Stella, L.; Lorenz, C. D.; Kantorovich, L.

    2014-04-01

    The generalized Langevin equation (GLE) has been recently suggested to simulate the time evolution of classical solid and molecular systems when considering general nonequilibrium processes. In this approach, a part of the whole system (an open system), which interacts and exchanges energy with its dissipative environment, is studied. Because the GLE is derived by projecting out exactly the harmonic environment, the coupling to it is realistic, while the equations of motion are non-Markovian. Although the GLE formalism has already found promising applications, e.g., in nanotribology and as a powerful thermostat for equilibration in classical molecular dynamics simulations, efficient algorithms to solve the GLE for realistic memory kernels are highly nontrivial, especially if the memory kernels decay nonexponentially. This is due to the fact that one has to generate a colored noise and take account of the memory effects in a consistent manner. In this paper, we present a simple, yet efficient, algorithm for solving the GLE for practical memory kernels and we demonstrate its capability for the exactly solvable case of a harmonic oscillator coupled to a Debye bath.

  4. Dynamics and Power Generation Potential from a Tethered Kite Moving in a Horizontal Flightpath

    NASA Astrophysics Data System (ADS)

    Gavi, Glenn Romo

    Tethered-wing power systems are a viable possibility for collecting energy from stronger, more consistent winds found in the upper regions of the atmosphere where conventional wind turbines are incapable of reaching. To date, all of the tethered-wing systems fly with the tether oriented down-wind of the ground attachment point. Examined here are the dynamics and performance of a novel system where the tether is oriented both upwind and downwind of the ground attachment point during normal operation of the device. Certain prototypes built by Makani and Ampyx Power are considered to have motions analogous to the motions of the blade tips on conventional horizontal-axis wind turbines. If true, this system has motions that are analogous to conventional vertical-axis wind turbines. The system has a ground-based generator which is mechanical coupled to the aircraft and energy is generated on the reel-out phase of each cycle while a smaller amount of energy is consumed during the reel-in phase of each cycle. A simple model was developed which captures the dominant dynamics of this system and shows, via simulation, that the proposed system is viable and capable of stable and unstable periodic motions with a simulated closed-loop tether tension controller or a simple open loop reel-rate controller. In addition, it is capable of motions which produce net positive power. The small system examined, where parameter optimization was not performed, predicts an average cycle power of more than 500 watts in a 10 m/s wind.

  5. Non-markovian mesoscopic dissipative dynamics of open quantum spin chains

    NASA Astrophysics Data System (ADS)

    Benatti, F.; Carollo, F.; Floreanini, R.; Narnhofer, H.

    2016-01-01

    We study the dissipative dynamics of N quantum spins with Lindblad generator consisting of operators scaling as fluctuations, namely with the inverse square-root of N. In the large N limit, the microscopic dissipative time-evolution converges to a non-Markovian unitary dynamics on strictly local operators, while at the mesoscopic level of fluctuations it gives rise to a dissipative non-Markovian dynamics. The mesoscopic time-evolution is Gaussian and exhibits either a stable or an unstable asymptotic character; furthermore, the mesoscopic dynamics builds correlations among fluctuations that survive in time even when the original microscopic dynamics is unable to correlate local observables.

  6. Using Automated Code Generation to Support High Performance Extended MHD Integration in OpenGGCM

    NASA Astrophysics Data System (ADS)

    Germaschewski, K.; Raeder, J.

    2011-10-01

    Automatic code generation is a technique that takes the specification of an algorithm at a high abstraction level and turns it into a well-tuned computer code. For finite-volume / finite-difference based discretizations, this higher abstraction level can be a stencil computation. At the backend, the code generator features modules which generate optimal code for specific hardware architectures, for example conventional architectures (x86) using SIMD instructions (e.g. SSE2), or heterogeneous architectures like the Cell processor or GPGPUs. The definition of the computation is agnostic to the actual hardware used, as a high-performance implementation tailored to the specific architecture will be generated automatically. The OpenGGCM code, a global magnetosphere model, has been converted to use an automatically generated implementation of its magnetohydrodynamics (MHD) integrator. The new version enables us to take advantage of the Cell processor's computational capability and also shows performance improvements of up to 2.3× on a conventional Intel processor. The code generation approach also facilitated the recent extension of the MHD model to incorporate Hall physics.

  7. Non-Markovian dynamics of open quantum systems

    NASA Astrophysics Data System (ADS)

    Fleming, Chris H.

    An open quantum system is a quantum system that interacts with some environment whose degrees of freedom have been coarse grained away. This model describes non-equilibrium processes more general than scattering-matrix formulations. Furthermore, the microscopically-derived environment provides a model of noise, dissipation and decoherence far more general than Markovian (white noise) models. The latter are fully characterized by Lindblad equations and can be motivated phenomenologically. Non-Markovian processes consistently account for backreaction with the environment and can incorporate effects such as finite temperature and spatial correlations. We consider linear systems with bilinear coupling to the environment, or quantum Brownian motion, and nonlinear systems with weak coupling to the environment. For linear systems we provide exact solutions with analytical results for a variety of spectral densities. Furthermore, we point out an important mathematical subtlety which led to incorrect master-equation coefficients in earlier derivations, given nonlocal dissipation. For nonlinear systems we provide perturbative solutions by translating the formalism of canonical perturbation theory into the context of master equations. It is shown that unavoidable degeneracy causes an unfortunate reduction in accuracy between perturbative master equations and their solutions. We also extend the famous theorem of Lindblad, Gorini, Kossakowski and Sudarshan on completely positivity to non-Markovian master equations. Our application is primarily to model atoms interacting via a common electromagnetic field. The electromagnetic field contains correlations in both space and time, which are related to its relativistic (photon-mediated) nature. As such, atoms residing in the same field experience different environmental effects depending upon their relative position and orientation. Our more accurate solutions were necessary to assess sudden death of entanglement at zero temperature

  8. Frequency dependence of the acoustic field generated from a spherical cavity transducer with open ends

    SciTech Connect

    Li, Faqi; Zeng, Deping; He, Min; Wang, Zhibiao E-mail: wangzhibiao@haifu.com.cn; Song, Dan; Lei, Guangrong; Lin, Zhou; Zhang, Dong E-mail: wangzhibiao@haifu.com.cn; Wu, Junru

    2015-12-15

    Resolution of high intensity focused ultrasound (HIFU) focusing is limited by the wave diffraction. We have developed a spherical cavity transducer with two open ends to improve the focusing precision without sacrificing the acoustic intensity (App Phys Lett 2013; 102: 204102). This work aims to theoretically and experimentally investigate the frequency dependence of the acoustic field generated from the spherical cavity transducer with two open ends. The device emits high intensity ultrasound at the frequency ranging from 420 to 470 kHz, and the acoustic field is measured by a fiber optic probe hydrophone. The measured results shows that the spherical cavity transducer provides high acoustic intensity for HIFU treatment only in its resonant modes, and a series of resonant frequencies can be choosen. Furthermore, a finite element model is developed to discuss the frequency dependence of the acoustic field. The numerical simulations coincide well with the measured results.

  9. Frequency dependence of the acoustic field generated from a spherical cavity transducer with open ends

    NASA Astrophysics Data System (ADS)

    Li, Faqi; Song, Dan; Zeng, Deping; Lin, Zhou; He, Min; Lei, Guangrong; Wu, Junru; Zhang, Dong; Wang, Zhibiao

    2015-12-01

    Resolution of high intensity focused ultrasound (HIFU) focusing is limited by the wave diffraction. We have developed a spherical cavity transducer with two open ends to improve the focusing precision without sacrificing the acoustic intensity (App Phys Lett 2013; 102: 204102). This work aims to theoretically and experimentally investigate the frequency dependence of the acoustic field generated from the spherical cavity transducer with two open ends. The device emits high intensity ultrasound at the frequency ranging from 420 to 470 kHz, and the acoustic field is measured by a fiber optic probe hydrophone. The measured results shows that the spherical cavity transducer provides high acoustic intensity for HIFU treatment only in its resonant modes, and a series of resonant frequencies can be choosen. Furthermore, a finite element model is developed to discuss the frequency dependence of the acoustic field. The numerical simulations coincide well with the measured results.

  10. Demographic heterogeneity and the dynamics of open populations.

    PubMed

    Noonburg, Erik G; Chen, Adam; Shima, Jeffrey S; Swearer, Stephen E

    2015-05-01

    Individuals vary in their phenotype and propensity for growth and survival, but the demographic consequences of this remain poorly understood. We extend previous theoretical work on benthic marine populations and formulate a new model to evaluate how demographic heterogeneity among newly settled reef fish affects population stability. We simulated settlement, growth, and mortality of a small reef fish, the common triplefin (Forsterygion lapillurn) in an open "subpopulation" using a delay-differential equation model framework. We modeled demographic heterogeneity with a discrete number of "quality" types, motivated by our previous empirical observations: individuals were either "high quality" (immigrants from nearby subpopulations) or "low quality" (immigrants from distant subpopulations); in our model, quality influences how quickly individuals develop at a given competitor density. Our results demonstrate how demographic heterogeneity and juvenile competition interact to qualitatively alter the effects of settlement on population stability. Specifically, our model suggests that a mixture of quality types can stabilize the equilibrium even when equal settlement of either type alone would result in an unstable equilibrium. These results highlight the importance of among-individual variation in a metapopulation context, and suggest that in systems where dispersal influences individual quality, connectivity may serve to stabilize local populations. PMID:26236830

  11. Investigation and control of noise generated during coal cutting. Open File report, September 1978-August 1985

    SciTech Connect

    Pettitt, M.R.

    1985-08-01

    The report presents the results of an extensive research and development program to reduce the noise generated during coal cutting. The characteristics and magnitude of continuous miner coal-cutting noise sources are defined. This work consisted of development of a simulated coal seam to facilitate above-ground coal cutting tests, noise measurements in a reverberant acoustic chamber during simulated mining operations of a continuous miner (cutting the simulated coal seam), and noise measurements in an underground coal mine during continuous miner operation. Methods to reduce coal cutting noise are presented. These methods take full advantage of the dynamic characteristics of the forces generated during coal cutting. Dynamic cutting force isolation was shown to be a very effective technique.

  12. Manipulation of the generation dynamics of a microresonator-based frequency comb via selective mode filtering

    NASA Astrophysics Data System (ADS)

    Bao, Chengying; Xiao, Xiaosheng; Yang, Changxi

    2013-05-01

    We suggest a scheme to manipulate the generation dynamics of high-Q microresonator-based frequency combs (microcombs). Our simulation demonstrates that a certain subfamily of comb teeth can be suppressed via selectively filtering out limited modes, from which high-quality mode-locked pulses can be generated. Mode-pulling in microcomb generation is also analyzed quantitatively to explain the results. These results can help us better understand microcomb generation dynamics and will be beneficial in controlling the generated comb line number and spacing.

  13. Alpha-canonical form representation of the open loop dynamics of the Space Shuttle main engine

    NASA Technical Reports Server (NTRS)

    Duyar, Almet; Eldem, Vasfi; Merrill, Walter C.; Guo, Ten-Huei

    1991-01-01

    A parameter and structure estimation technique for multivariable systems is used to obtain a state space representation of open loop dynamics of the space shuttle main engine in alpha-canonical form. The parameterization being used is both minimal and unique. The simplified linear model may be used for fault detection studies and control system design and development.

  14. Collaborative Learning: The Effects of Trust and Open and Closed Dynamics on Consensus and Efficacy

    ERIC Educational Resources Information Center

    Harney, Owen; Hogan, Michael J.; Broome, Benjamin J.

    2012-01-01

    The current study compared the effects of open versus closed group dynamics on perceived consensus, objective consensus, and perceived efficacy of collaborative learning in participants high and low in dispositional trust in the context of an Interactive Management (IM) session. Interactive management is a computer-mediated collaborative tool…

  15. Synchronous Generator Model Parameter Estimation Based on Noisy Dynamic Waveforms

    NASA Astrophysics Data System (ADS)

    Berhausen, Sebastian; Paszek, Stefan

    2016-01-01

    In recent years, there have occurred system failures in many power systems all over the world. They have resulted in a lack of power supply to a large number of recipients. To minimize the risk of occurrence of power failures, it is necessary to perform multivariate investigations, including simulations, of power system operating conditions. To conduct reliable simulations, the current base of parameters of the models of generating units, containing the models of synchronous generators, is necessary. In the paper, there is presented a method for parameter estimation of a synchronous generator nonlinear model based on the analysis of selected transient waveforms caused by introducing a disturbance (in the form of a pseudorandom signal) in the generator voltage regulation channel. The parameter estimation was performed by minimizing the objective function defined as a mean square error for deviations between the measurement waveforms and the waveforms calculated based on the generator mathematical model. A hybrid algorithm was used for the minimization of the objective function. In the paper, there is described a filter system used for filtering the noisy measurement waveforms. The calculation results of the model of a 44 kW synchronous generator installed on a laboratory stand of the Institute of Electrical Engineering and Computer Science of the Silesian University of Technology are also given. The presented estimation method can be successfully applied to parameter estimation of different models of high-power synchronous generators operating in a power system.

  16. Pseudo generators for under-resolved molecular dynamics

    NASA Astrophysics Data System (ADS)

    Bittracher, A.; Hartmann, C.; Junge, O.; Koltai, P.

    2015-09-01

    Many features of a molecule which are of physical interest (e.g. molecular conformations, reaction rates) are described in terms of its dynamics in configuration space. This article deals with the projection of molecular dynamics in phase space onto configuration space. Specifically, we study the situation that the phase space dynamics is governed by a stochastic Langevin equation and study its relation with the configurational Smoluchowski equation in the three different scaling regimes: Firstly, the Smoluchowski equations in non-Cartesian geometries are derived from the overdamped limit of the Langevin equation. Secondly, transfer operator methods are used to describe the metastable behaviour of the system at hand, and an explicit small-time asymptotics is derived on which the Smoluchowski equation turns out to govern the dynamics of the position coordinate (without any assumptions on the damping). By using an adequate reduction technique, these considerations are then extended to one-dimensional reaction coordinates. Thirdly, we sketch three different approaches to approximate the metastable dynamics based on time-local information only.

  17. Dynamical fermion mass generation and exciton spectra in graphene

    SciTech Connect

    Zhang Chunxu; Liu Guozhu; Huang Mingqiu

    2011-03-15

    The Coulomb interaction between massless Dirac fermions may induce dynamical chiral symmetry breaking by forming excitonic pairs in clean graphene, leading to semimetal-insulator transition. If the Dirac fermions have zero bare mass, an exact continuous chiral symmetry is dynamically broken and thus there are massless Goldstone excitons. If the Dirac fermions have a small bare mass, an approximate continuous chiral symmetry is dynamically broken and the resultant Goldstone-type excitons become massive, which is analogous to what happens in QCD. In this paper, after solving the Dyson-Schwinger gap equation in the presence of a small bare fermion mass, we found a remarkable reduction of the critical Coulomb interaction strength for excitonic pair formation and a strong enhancement of dynamical fermion mass. We then calculate the masses of Goldstone-type excitons using the Shifman-Vainshtein-Zakharov sum-rule method and operator product expansion technique developed in QCD and find that the exciton masses are much larger than bare fermion mass but smaller than the width of dynamical fermion mass gap. We also study the spin susceptibilities and estimate the masses of non-Goldstone-type excitons using the same tools.

  18. Inward open characterization of EmrD transporter with molecular dynamics simulation.

    PubMed

    Tan, Xianwei; Wang, Boxiong

    2016-06-10

    EmrD is a member of the multidrug resistance exporter family. Up to now, little is known about the structural dynamics that underline the function of the EmrD protein in inward-facing open state and how the EmrD transits from an occluded state to an inward open state. For the first time the article applied the AT simulation to investigate the membrane transporter protein EmrD, and described the dynamic features of the whole protein, the domain, the helices, and the amino acid residues during an inward-open process from its occluded state. The gradual inward-open process is different from the current model of rigid-body domain motion in alternating-access mechanism. Simulation results show that the EmrD inward-open conformational fluctuation propagates from a C-terminal domain to an N-terminal domain via the linker region during the transition from its occluded state. The conformational fluctuation of the C-terminal domain is larger than that of the N-terminal domain. In addition, it is observed that the helices exposed to the surrounding membrane show a higher level of flexibility than the other regions, and the protonated E227 plays a key role in the transition from the occluded to the open state. PMID:27055595

  19. Experimental investigation of door dynamic opening caused by impinging shock wave

    NASA Astrophysics Data System (ADS)

    Biamino, L.; Jourdan, G.; Mariani, C.; Igra, O.; Massol, A.; Houas, L.

    2011-02-01

    To prevent damage caused by accidental overpressure inside a closed duct (e.g. jet engine) safety valves are introduced. The present study experimentally investigates the dynamic opening of such valves by employing a door at the end of a shock tube driven section. The door is hung on an axis and is free to rotate, thereby opening the tube. The evolved flow and wave pattern due to a collision of an incident shock wave with the door, causing the door opening, is studied by employing a high speed schlieren system and recording pressures at different places inside the tube as well as on the rotating door. Analyzing this data sheds light on the air flow evolution and the behavior of the opening door. In the present work, emphasis is given to understanding the complex, unsteady flow developed behind the transmitted shock wave as it diffracts over the opening door. It is shown that both the door inertia and the shock wave strength influence the opening dynamic evolution, but not in the proportions that might be expected.

  20. Combined Flux Compression and Plasma Opening Switch on the Saturn Pulsed Power Generator

    SciTech Connect

    Felber, Franklin S.; Waisman, Eduardo M.; Mazarakis, Michael G.

    2010-05-07

    A wire-array flux-compression cartridge installed on Sandia's Saturn pulsed power generator doubled the current into a 3-nH load to 6 MA and halved its rise time to 100 ns. The current into the load, however, was unexpectedly delayed by almost 1 {mu}s. Estimates of a plasma flow switch acting as a long-conduction-time opening switch are consistent with key features of the power compression. The results suggest that microsecond-conduction-time plasma flow switches can be combined with flux compression both to amplify currents and to sharpen pulse rise times in pulsed power drivers.

  1. Ionothermal synthesis of chiral metal phosphite open frameworks with in situ generated organic templates.

    PubMed

    Li, Li-Ming; Cheng, Kai; Wang, Fei; Zhang, Jian

    2013-05-20

    Two novel three-dimensional chiral metal phosphite open frameworks with 4-connected quartz topology, [Me2-DABCO][M2(HPO3)3] [M = Co (1), Zn (2); Me2-DABCO = N,N'-dimethyl-1,4-diazabicyclo[2.2.2]octane], have been ionothermally synthesized in deep eutectic solvents (choline chloride/1,3-dimethylurea). It is interesting that the organic template, Me2-DABCO, is in situ generated from the alkylation reaction of 1,4-diazabicyclo[2.2.2]octane and dimethyl phosphites. PMID:23621695

  2. Brane world generated dynamically from string type IIB matrices

    PubMed

    Nishimura; Vernizzi

    2000-11-27

    We have recently proposed a dynamical mechanism that may realize a flat four-dimensional space-time as a brane in type IIB superstring theory. A crucial role is played by the phase of the chiral fermion integral associated with the IKKT (Ishibashi-Kawai-Kitazawa-Tsuchiya) matrix theory, which is conjectured to be a nonperturbative definition of type IIB superstring theory. We demonstrate our mechanism by studying a simplified model, in which we find that a lower-dimensional brane indeed appears dynamically. We also comment on some implications of our mechanism on model building of the brane world. PMID:11082622

  3. Canonical versus noncanonical equilibration dynamics of open quantum systems.

    PubMed

    Yang, Chun-Jie; An, Jun-Hong; Luo, Hong-Gang; Li, Yading; Oh, C H

    2014-08-01

    In statistical mechanics, any quantum system in equilibrium with its weakly coupled reservoir is described by a canonical state at the same temperature as the reservoir. Here, by studying the equilibration dynamics of a harmonic oscillator interacting with a reservoir, we evaluate microscopically the condition under which the equilibration to a canonical state is valid. It is revealed that the non-Markovian effect and the availability of a stationary state of the total system play a profound role in the equilibration. In the Markovian limit, the conventional canonical state can be recovered. In the non-Markovian regime, when the stationary state is absent, the system equilibrates to a generalized canonical state at an effective temperature; whenever the stationary state is present, the equilibrium state of the system cannot be described by any canonical state anymore. Our finding of the physical condition on such noncanonical equilibration might have significant impact on statistical physics. A physical scheme based on circuit QED is proposed to test our results. PMID:25215704

  4. Generating dynamic simulations of movement using computed muscle control.

    PubMed

    Thelen, Darryl G; Anderson, Frank C; Delp, Scott L

    2003-03-01

    Computation of muscle excitation patterns that produce coordinated movements of muscle-actuated dynamic models is an important and challenging problem. Using dynamic optimization to compute excitation patterns comes at a large computational cost, which has limited the use of muscle-actuated simulations. This paper introduces a new algorithm, which we call computed muscle control, that uses static optimization along with feedforward and feedback controls to drive the kinematic trajectory of a musculoskeletal model toward a set of desired kinematics. We illustrate the algorithm by computing a set of muscle excitations that drive a 30-muscle, 3-degree-of-freedom model of pedaling to track measured pedaling kinematics and forces. Only 10 min of computer time were required to compute muscle excitations that reproduced the measured pedaling dynamics, which is over two orders of magnitude faster than conventional dynamic optimization techniques. Simulated kinematics were within 1 degrees of experimental values, simulated pedal forces were within one standard deviation of measured pedal forces for nearly all of the crank cycle, and computed muscle excitations were similar in timing to measured electromyographic patterns. The speed and accuracy of this new algorithm improves the feasibility of using detailed musculoskeletal models to simulate and analyze movement. PMID:12594980

  5. Coherent Dynamics of Open Quantum System in the Presence of Majorana Fermions

    NASA Astrophysics Data System (ADS)

    Assuncao, Maryzaura O.; Diniz, Ginetom S.; Vernek, Edson; Souza, Fabricio M.

    In recent years the research on quantum coherent dynamics of open systems has attracted great attention due to its relevance for future implementation of quantum computers. In the present study we apply the Kadanoff-Baym formalism to simulate the population dynamics of a double-dot molecular system attached to both a superconductor and fermionic reservoirs. We solve both analytically and numerically a set of coupled differential equations that account for crossed Andreev reflection (CAR), intramolecular hopping and tunneling. We pay particular attention on how Majorana bound states can affect the population dynamics of the molecule. We investigate on how initial state configuration affects the dynamics. For instance, if one dot is occupied and the other one is empty, the dynamics is dictated by the inter dot tunneling. On the other hand, for initially empty dots, the CAR dominates. We also investigate how the source and drain currents evolve in time. This work was supporte by FAPEMIG, CNPq and CAPES.

  6. A semiconductor opening switch based generator with pulse repetitive frequency of 4 MHz.

    PubMed

    Wang, Gang; Su, Jiancang; Ding, Zhenjie; Yuan, Xuelin; Pan, Yafeng

    2013-12-01

    A MHz repetitive and nanosecond pulsed power generator based on the semiconductor opening switch (SOS) is developed, in which the pulse compression unit utilizes several Radio Frequency (RF) MOSFETs and a saturable Linear Transformer Driver (LTD). The RF MOSFETs are employed to obtain the forward pumping current pulses with the duration of tens of nanoseconds; the saturable LTD is used to raise the pulse voltage, to compress the pulse width and to pump SOS reversely. The SOS assembly cuts off the reverse current in a few nanoseconds, leading to a narrow output pulse on an external load. The experimental results show that the amplitude of the output pulse on a 106 Ω resistive load is about 3.8 kV and the width is 2 ns. Due to the repetitive ability of the RF MOSFETs, the generator can operate at a repetitive frequency of higher than 4 MHz in burst mode. PMID:24387463

  7. Towards numerical simulation of turbulent hydrogen combustion based on flamelet generated manifolds in OpenFOAM

    NASA Astrophysics Data System (ADS)

    Fancello, A.; Bastiaans, R. J. M.; de Goey, L. P. H.

    2013-10-01

    This work proposes an application of the Flamelet-Generated Manifolds (FGM) technique in the OpenFOAM environment. FGM is a chemical reduced method for combustion modeling. This technique treats the combustion process as the solution of a small amount of controlling variables. Regarding laminar simulation, a progress variable and enthalpy evolution can describe satisfactorily the problem. From a turbulent point of view, FGM can be applied to LES and RANS simulations, where the subgrid chemical terms are described with a β - PDF approach. These approaches apply satisfactorily in relatively simple gases, nevertheless for hydrogen are not more valid, due to preferential diffusion effects and instability of the flame structure. The overall aim of this research is to find technical solution for hydrogen gas turbines design in the next generation of Integrated Gasification Combined Cycle (IGCC) plants.

  8. The significance of micro-topography in generating flow structures in open channel flow

    NASA Astrophysics Data System (ADS)

    Hardy, R. J.

    2011-12-01

    This poster investigates the effect of micro-topographic roughness on the generation, evolution and dissipation of turbulent flow structures in open channel flow. Primarily, a series of flume experiment were undertaken where natural fluvial gravel was placed in a flume and water worked until a stable bed with no sediment transport was obtained. The surface topography was measured to create a digital elevation model (DEM) enabling particle size characteristics to be measured and roughness lengths to be calculated. Flow was measured, at flow Reynolds numbers over two orders of magnitude, using Particle Imaging Velocimetry at data frequencies up to 100 Hz at a spatial resolution of 2×10-3 m. The flume conditions also provided the necessary boundary conditions for Large Eddy Simulation of flow over these heterogeneous surfaces. The data generated by these two separate methodologies was analyzed through a series of approaches, and included: i) standard Reynolds decomposition to the flow fields; ii) Eulerian coherent structure detection methods based on the invariants of the velocity gradient tensor; iii) Lagrangian coherent structure identification methods based upon direct Lyapunov exponents (DLE) and; iv) Proper Orthogonal Decomposition (POD) analysis to obtain a full understanding of the turbulent flow structures. Once the LES scheme had been fully validated against the PIV data, scales of topography were removed from the DEM. The LES simulations were then recalculated to assess the influence of topography on the generation of turbulent flow structures. The results demonstrate that the generative mechanism for these bed-generated coherent flow structures are merging hairpin-type vortices that form around bed clasts and generate larger-scale roller-type structures. This mechanism of generation appears consistent over the range of Reynolds numbers but the spatial and temporal length scales appear dependent upon the bed roughness.

  9. High-voltage pulsed generator for dynamic fragmentation of rocks

    NASA Astrophysics Data System (ADS)

    Kovalchuk, B. M.; Kharlov, A. V.; Vizir, V. A.; Kumpyak, V. V.; Zorin, V. B.; Kiselev, V. N.

    2010-10-01

    A portable high-voltage (HV) pulsed generator has been designed for rock fragmentation experiments. The generator can be used also for other technological applications. The installation consists of low voltage block, HV block, coaxial transmission line, fragmentation chamber, and control system block. Low voltage block of the generator, consisting of a primary capacitor bank (300 μF) and a thyristor switch, stores pulse energy and transfers it to the HV block. The primary capacitor bank stores energy of 600 J at the maximum charging voltage of 2 kV. HV block includes HV pulsed step up transformer, HV capacitive storage, and two electrode gas switch. The following technical parameters of the generator were achieved: output voltage up to 300 kV, voltage rise time of ˜50 ns, current amplitude of ˜6 kA with the 40 Ω active load, and ˜20 kA in a rock fragmentation regime (with discharge in a rock-water mixture). Typical operation regime is a burst of 1000 pulses with a frequency of 10 Hz. The operation process can be controlled within a wide range of parameters. The entire installation (generator, transmission line, treatment chamber, and measuring probes) is designed like a continuous Faraday's cage (complete shielding) to exclude external electromagnetic perturbations.

  10. Attosecond Probing of Vibrational Dynamics with High-Harmonic Generation

    NASA Astrophysics Data System (ADS)

    Lein, Manfred

    2005-02-01

    The numerical solution of the time-dependent Schrödinger equation for vibrating hydrogen molecules in few-cycle laser pulses shows that high-harmonic generation is sensitive to the laser-induced vibrational motion. More intense harmonics are generated in heavier isotopes, the difference increasing with the harmonic frequency. Analytical theory reveals a dependence of the harmonics on the vibrational autocorrelation function. With the help of a genetic algorithm, the nuclear motion can be reconstructed from the harmonic spectra with sub-fs time resolution.

  11. Distributed Dynamic State Estimator, Generator Parameter Estimation and Stability Monitoring Demonstration

    SciTech Connect

    Meliopoulos, Sakis; Cokkinides, George; Fardanesh, Bruce; Hedrington, Clinton

    2013-12-31

    This is the final report for this project that was performed in the period: October1, 2009 to June 30, 2013. In this project, a fully distributed high-fidelity dynamic state estimator (DSE) that continuously tracks the real time dynamic model of a wide area system with update rates better than 60 times per second is achieved. The proposed technology is based on GPS-synchronized measurements but also utilizes data from all available Intelligent Electronic Devices in the system (numerical relays, digital fault recorders, digital meters, etc.). The distributed state estimator provides the real time model of the system not only the voltage phasors. The proposed system provides the infrastructure for a variety of applications and two very important applications (a) a high fidelity generating unit parameters estimation and (b) an energy function based transient stability monitoring of a wide area electric power system with predictive capability. Also the dynamic distributed state estimation results are stored (the storage scheme includes data and coincidental model) enabling an automatic reconstruction and “play back” of a system wide disturbance. This approach enables complete play back capability with fidelity equal to that of real time with the advantage of “playing back” at a user selected speed. The proposed technologies were developed and tested in the lab during the first 18 months of the project and then demonstrated on two actual systems, the USVI Water and Power Administration system and the New York Power Authority’s Blenheim-Gilboa pumped hydro plant in the last 18 months of the project. The four main thrusts of this project, mentioned above, are extremely important to the industry. The DSE with the achieved update rates (more than 60 times per second) provides a superior solution to the “grid visibility” question. The generator parameter identification method fills an important and practical need of the industry. The “energy function” based

  12. Schwinger-Dyson Equations and Dynamical gluon mass generation

    SciTech Connect

    Aguilar, A.C.; Natale, A.A.

    2004-12-02

    We obtain a solution for the gluon propagador in Landau gauge within two distinct approximations for the Schwinger-Dyson equations (SDE). The first, named Mandelstam's approximation, consist in neglecting all contributions that come from fermions and ghosts fields while in the second, the ghosts fields are taken into account leading to a coupled system of integral equations. In both cases we show that a dynamical mass for the gluon propagator can arise as a solution.

  13. A first-generation prototype dynamic residential window

    SciTech Connect

    Kohler, Christian; Goudey, Howdy; Arasteh, Dariush

    2004-10-26

    We present the concept for a ''smart'' highly efficient dynamic window that maximizes solar heat gain during the heating season and minimizes solar heat gain during the cooling season in residential buildings. We describe a prototype dynamic window that relies on an internal shade, which deploys automatically in response to solar radiation and temperature. This prototype was built at Lawrence Berkeley National Laboratory from commercially available ''off-the-shelf'' components. It is a stand-alone, standard-size product, so it can be easily installed in place of standard window products. Our design shows promise for near-term commercialization. Improving thermal performance of this prototype by incorporating commercially available highly efficient glazing technologies could result in the first window that could be suitable for use in zero-energy homes. The unit's predictable deployment of shading could help capture energy savings that are not possible with manual shading. Installation of dynamically shaded windows in the field will allow researchers to better quantify the energy effects of shades, which could lead to increased efficiency in the sizing of heating, ventilation, and air conditioning equipment for residences.

  14. Quantum algorithm for simulating the dynamics of an open quantum system

    SciTech Connect

    Wang Hefeng; Ashhab, S.; Nori, Franco

    2011-06-15

    In the study of open quantum systems, one typically obtains the decoherence dynamics by solving a master equation. The master equation is derived using knowledge of some basic properties of the system, the environment, and their interaction: One basically needs to know the operators through which the system couples to the environment and the spectral density of the environment. For a large system, it could become prohibitively difficult to even write down the appropriate master equation, let alone solve it on a classical computer. In this paper, we present a quantum algorithm for simulating the dynamics of an open quantum system. On a quantum computer, the environment can be simulated using ancilla qubits with properly chosen single-qubit frequencies and with properly designed coupling to the system qubits. The parameters used in the simulation are easily derived from the parameters of the system + environment Hamiltonian. The algorithm is designed to simulate Markovian dynamics, but it can also be used to simulate non-Markovian dynamics provided that this dynamics can be obtained by embedding the system of interest into a larger system that obeys Markovian dynamics. We estimate the resource requirements for the algorithm. In particular, we show that for sufficiently slow decoherence a single ancilla qubit could be sufficient to represent the entire environment, in principle.

  15. Plasma-wave generation in a dynamic spacetime

    NASA Astrophysics Data System (ADS)

    Zhang, Fan; Yang, Huan

    2016-03-01

    The studies on the electromagnetic counterparts to gravitational waves have largely been focusing on binary mergers containing at least one neutron star. Numerical studies have shown however, that binary black holes can also give off electromagnetic signals when immersed in magnetized plasma. I will present some analytical work that explore the underlying mechanism for generating such signals.

  16. Spatio-Temporal Dynamics of Cross Polarized Wave Generation

    NASA Astrophysics Data System (ADS)

    Adams, Daniel; Squier, Jeff; Durfee, Charles

    2009-10-01

    We use time-domain Spatially and Spectrally Resolved Interferometry (SSRI) to investigate cross-polarized wave (XPW) generation in barium fluoride. We find that the XPW pulse is √3 smaller than the input in the spatiotemporal domain regardless of the input chirp. Additionally, we calculate a temporally dependent focal length resulting from the nonlinear interaction, and discuss its implications.

  17. Drawing on Dynamic Local Knowledge through Student-Generated Photography

    ERIC Educational Resources Information Center

    Coles-Ritchie, Marilee; Monson, Bayley; Moses, Catherine

    2015-01-01

    In this research, the authors explored how teachers using student-generated photography draw on local knowledge. The study draws on the framework of funds of knowledge to highlight the assets marginalized students bring to the classroom and the need for culturally relevant pedagogy to address the needs of a diverse public school population. The…

  18. A dynamical systems analysis of afferent control in a neuromechanical model of locomotion. I. Rhythm generation

    PubMed Central

    Spardy, Lucy E.; Markin, Sergey N.; Shevtsova, Natalia A.; Prilutsky, Boris I.; Rybak, Ilya A.; Rubin, Jonathan E.

    2012-01-01

    Locomotion in mammals is controlled by a spinal central pattern generator (CPG) coupled to a biomechanical limb system, with afferent feedback to the spinal circuits and CPG closing the control loop. We have considered a simplified model of this system, in which the CPG establishes a rhythm when a supra-spinal activating drive is present and afferent signals from a single-joint limb feed back to affect CPG operation. Using dynamical systems methods, in a series of two papers, we analyze the mechanisms by which this model produces oscillations, and the characteristics of these oscillations, in the closed and open loop regimes. In this first paper, we analyze the phase transition mechanisms operating within the CPG and use the results to explain how afferent feedback allows oscillations to occur at a wider range of drive values to the CPG than the range over which oscillations occur in the CPG without feedback and to comment on why stronger feedback leads to faster oscillations. Linking these transitions to structure in the phase plane associated with the limb segment clarifies how increased weights of afferent feedback to the CPG can restore locomotion after removal of supra-spinal drive to simulate spinal cord injury. PMID:22058274

  19. A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: I. Rhythm generation.

    PubMed

    Spardy, Lucy E; Markin, Sergey N; Shevtsova, Natalia A; Prilutsky, Boris I; Rybak, Ilya A; Rubin, Jonathan E

    2011-12-01

    Locomotion in mammals is controlled by a spinal central pattern generator (CPG) coupled to a biomechanical limb system, with afferent feedback to the spinal circuits and CPG closing the control loop. We have considered a simplified model of this system, in which the CPG establishes a rhythm when a supra-spinal activating drive is present and afferent signals from a single-joint limb feed back to affect CPG operation. Using dynamical system methods, in a series of two papers we analyze the mechanisms by which this model produces oscillations, and the characteristics of these oscillations, in the closed- and open-loop regimes. In this first paper, we analyze the phase transition mechanisms operating within the CPG and use the results to explain how afferent feedback allows oscillations to occur at a wider range of drive values to the CPG than the range over which oscillations occur in the CPG without feedback, and then to comment on why stronger feedback leads to faster oscillations. Linking these transitions to structures in the phase plane associated with the limb segment clarifies how increased weights of afferent feedback to the CPG can restore locomotion after removal of supra-spinal drive to simulate spinal cord injury. PMID:22058274

  20. A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: I. Rhythm generation

    NASA Astrophysics Data System (ADS)

    Spardy, Lucy E.; Markin, Sergey N.; Shevtsova, Natalia A.; Prilutsky, Boris I.; Rybak, Ilya A.; Rubin, Jonathan E.

    2011-10-01

    Locomotion in mammals is controlled by a spinal central pattern generator (CPG) coupled to a biomechanical limb system, with afferent feedback to the spinal circuits and CPG closing the control loop. We have considered a simplified model of this system, in which the CPG establishes a rhythm when a supra-spinal activating drive is present and afferent signals from a single-joint limb feed back to affect CPG operation. Using dynamical system methods, in a series of two papers we analyze the mechanisms by which this model produces oscillations, and the characteristics of these oscillations, in the closed- and open-loop regimes. In this first paper, we analyze the phase transition mechanisms operating within the CPG and use the results to explain how afferent feedback allows oscillations to occur at a wider range of drive values to the CPG than the range over which oscillations occur in the CPG without feedback, and then to comment on why stronger feedback leads to faster oscillations. Linking these transitions to structures in the phase plane associated with the limb segment clarifies how increased weights of afferent feedback to the CPG can restore locomotion after removal of supra-spinal drive to simulate spinal cord injury.

  1. Rotor dynamic considerations for large wind power generator systems

    NASA Technical Reports Server (NTRS)

    Ormiston, R. A.

    1973-01-01

    Successful large, reliable, low maintenance wind turbines must be designed with full consideration for minimizing dynamic response to aerodynamic, inertial, and gravitational forces. Much of existing helicopter rotor technology is applicable to this problem. Compared with helicopter rotors, large wind turbines are likely to be relatively less flexible with higher dimensionless natural frequencies. For very large wind turbines, low power output per unit weight and stresses due to gravitational forces are limiting factors. The need to reduce rotor complexity to a minimum favors the use of cantilevered (hingeless) rotor configurations where stresses are relieved by elastic deformations.

  2. Dynamics of Cell Generation and Turnover in the Human Heart.

    PubMed

    Bergmann, Olaf; Zdunek, Sofia; Felker, Anastasia; Salehpour, Mehran; Alkass, Kanar; Bernard, Samuel; Sjostrom, Staffan L; Szewczykowska, Mirosława; Jackowska, Teresa; Dos Remedios, Cris; Malm, Torsten; Andrä, Michaela; Jashari, Ramadan; Nyengaard, Jens R; Possnert, Göran; Jovinge, Stefan; Druid, Henrik; Frisén, Jonas

    2015-06-18

    The contribution of cell generation to physiological heart growth and maintenance in humans has been difficult to establish and has remained controversial. We report that the full complement of cardiomyocytes is established perinataly and remains stable over the human lifespan, whereas the numbers of both endothelial and mesenchymal cells increase substantially from birth to early adulthood. Analysis of the integration of nuclear bomb test-derived (14)C revealed a high turnover rate of endothelial cells throughout life (>15% per year) and more limited renewal of mesenchymal cells (<4% per year in adulthood). Cardiomyocyte exchange is highest in early childhood and decreases gradually throughout life to <1% per year in adulthood, with similar turnover rates in the major subdivisions of the myocardium. We provide an integrated model of cell generation and turnover in the human heart. PMID:26073943

  3. Innovative open air brayton combined cycle systems for the next generation nuclear power plants

    NASA Astrophysics Data System (ADS)

    Zohuri, Bahman

    The purpose of this research was to model and analyze a nuclear heated multi-turbine power conversion system operating with atmospheric air as the working fluid. The air is heated by a molten salt, or liquid metal, to gas heat exchanger reaching a peak temperature of 660 0C. The effects of adding a recuperator or a bottoming steam cycle have been addressed. The calculated results are intended to identify paths for future work on the next generation nuclear power plant (GEN-IV). This document describes the proposed system in sufficient detail to communicate a good understanding of the overall system, its components, and intended uses. The architecture is described at the conceptual level, and does not replace a detailed design document. The main part of the study focused on a Brayton --- Rankine Combined Cycle system and a Recuperated Brayton Cycle since they offer the highest overall efficiencies. Open Air Brayton power cycles also require low cooling water flows relative to other power cycles. Although the Recuperated Brayton Cycle achieves an overall efficiency slightly less that the Brayton --- Rankine Combined Cycle, it is completely free of a circulating water system and can be used in a desert climate. Detailed results of modeling a combined cycle Brayton-Rankine power conversion system are presented. The Rankine bottoming cycle appears to offer a slight efficiency advantage over the recuperated Brayton cycle. Both offer very significant advantages over current generation Light Water Reactor steam cycles. The combined cycle was optimized as a unit and lower pressure Rankine systems seem to be more efficient. The combined cycle requires a lot less circulating water than current power plants. The open-air Brayton systems appear to be worth investigating, if the higher temperatures predicted for the Next Generation Nuclear Plant do materialize.

  4. Temporal Dynamics of Hypothesis Generation: The Influences of Data Serial Order, Data Consistency, and Elicitation Timing

    PubMed Central

    Lange, Nicholas D.; Thomas, Rick P.; Davelaar, Eddy J.

    2012-01-01

    The pre-decisional process of hypothesis generation is a ubiquitous cognitive faculty that we continually employ in an effort to understand our environment and thereby support appropriate judgments and decisions. Although we are beginning to understand the fundamental processes underlying hypothesis generation, little is known about how various temporal dynamics, inherent in real world generation tasks, influence the retrieval of hypotheses from long-term memory. This paper presents two experiments investigating three data acquisition dynamics in a simulated medical diagnosis task. The results indicate that the mere serial order of data, data consistency (with previously generated hypotheses), and mode of responding influence the hypothesis generation process. An extension of the HyGene computational model endowed with dynamic data acquisition processes is forwarded and explored to provide an account of the present data. PMID:22754547

  5. On singular probability densities generated by extremal dynamics

    NASA Astrophysics Data System (ADS)

    Garcia, Guilherme J. M.; Dickman, Ronald

    2004-02-01

    Extremal dynamics is the mechanism that drives the Bak-Sneppen model into a (self-organized) critical state, marked by a singular stationary probability density p( x). With the aim of understanding this phenomenon, we study the BS model and several variants via mean-field theory and simulation. In all cases, we find that p( x) is singular at one or more points, as a consequence of extremal dynamics. Furthermore we show that the extremal barrier xi always belongs to the ‘prohibited’ interval, in which p( x)=0. Our simulations indicate that the Bak-Sneppen universality class is robust with regard to changes in the updating rule: we find the same value for the exponent π for all variants. Mean-field theory, which furnishes an exact description for the model on a complete graph, reproduces the character of the probability distribution found in simulations. For the modified processes mean-field theory takes the form of a functional equation for p( x).

  6. Exploring dynamical gluon mass generation in three dimensions

    NASA Astrophysics Data System (ADS)

    Cornwall, John M.

    2016-01-01

    We reexamine the d =3 dynamical gluon mass problem in pure-glue non-Abelian S U (N ) gauge theories, paying particular attention to the observed (in Landau gauge) violation of positivity for the spectral function of the gluon propagator. This is expressed as a large bulge in the propagator at small momentum, due to the d =3 avatar of asymptotic freedom. Mass is defined through m-2=Δ (p =0 ) , where Δ (p ) is the scalar function for the gluon propagator in some chosen gauge; it is not a pole mass and is generally gauge dependent, except in the gauge-invariant pinch technique (PT). We truncate the PT equations with a recently proposed method called the vertex paradigm that automatically satisfies the QED-like Ward identity relating the three-gluon PT vertex function with the PT propagator. The mass is determined by a homogeneous Bethe-Salpeter equation involving this vertex and propagator. This gap equation also encapsulates the Bethe-Salpeter equation for the massless scalar excitations, essentially Nambu-Goldstone fields, that necessarily accompany gauge-invariant gluon mass. The problem is to find a good approximate value for m and at the same time explain the bulge, which by itself leads, in the gap equation for the gluon mass, to excessively large values for the mass. Our point is not to give a high-accuracy determination of m but to clarify the way in which the propagator bulge and a fairly accurate estimate of m can coexist, and we use various approximations that illustrate the underlying mechanisms. The most critical point is to satisfy the Ward identity. In the PT we estimate a gauge-invariant dynamical gluon mass of m ≈N g2/(2.48 π ) . We translate these results to the Landau gauge using a background-quantum identity involving a dynamical quantity κ such that m =κ mL , where mL-2≡ΔL(p =0 ) . Given our estimates for m , κ , the relation is fortuitously well satisfied for S U (2 ) lattice data.

  7. Small shape deviations causes complex dynamics in large electric generators

    NASA Astrophysics Data System (ADS)

    Lundström, Niklas L. P.; Grafström, Anton; Aidanpää, Jan-Olov

    2014-05-01

    We prove that combinations of small eccentricity, ovality and/or triangularity in the rotor and stator can produce complex whirling motions of an unbalanced rotor in large synchronous generators. It is concluded which structures of shape deviations that are more harmful, in the sense of producing complex whirling motions, than others. For each such structure, we derive simplified equations of motions from which we conclude analytically the relation between shape deviations and mass unbalance that yield non-smooth whirling motions. Finally we discuss validity of our results in the sense of modeling of the unbalanced magnetic pull force.

  8. All-solid-state repetitive semiconductor opening switch-based short pulse generator

    NASA Astrophysics Data System (ADS)

    Ding, Zhenjie; Hao, Qingsong; Hu, Long; Su, Jiancang; Liu, Guozhi

    2009-09-01

    The operating characteristics of a semiconductor opening switch (SOS) are determined by its pumping circuit parameters. SOS is still able to cut off the current when pumping current duration falls to the order of tens of nanoseconds and a short pulse forms simultaneously in the output load. An all-solid-state repetitive SOS-based short pulse generator (SPG100) with a three-level magnetic pulse compression unit was successfully constructed. The generator adopts magnetic pulse compression unit with metallic glass and ferrite cores, which compresses a 600 V, 10 μs primary pulse into short pulse with forward pumping current of 825 A, 60 ns and reverse pumping current of 1.3 kA, 30 ns. The current is sent to SOS in which the reverse pumping current is interrupted. The generator is capable of providing a pulse with the voltage of 120 kV and duration of 5-6 ns while output load being 125 Ω. The highest repetition rate is up to 1 kHz.

  9. A 6 GW nanosecond solid-state generator based on semiconductor opening switch

    NASA Astrophysics Data System (ADS)

    Gusev, A. I.; Pedos, M. S.; Rukin, S. N.; Timoshenkov, S. P.; Tsyranov, S. N.

    2015-11-01

    In this paper, a nanosecond all solid-state generator providing peak power of up to 6 GW, output voltage of 500-900 kV, pulse length (full width at half maximum) of ˜7 ns across external loads of 40-100 Ω, and pulse repetition frequency up to 1 kHz in burst operation mode is described. The output pulse is generated by a semiconductor opening switch (SOS). A new SOS pumping circuit based on a double forming line (DFL) is proposed and its implementation described. As compared with a lumped capacitors-based pumping circuit, the DFL allows minimization of the inductance and stray capacitance of the reverse pumping circuit, and thus, an increase in the SOS cutoff current amplitude and generator output peak power as a whole. The pumping circuit provides a reverse current increasing through the SOS up to 14 kA within ˜12 ns. The SOS cuts off the current in ˜2 ns; the current cutoff rate reaches 7 kA/ns. The SOS braking power (the product of peak voltage and cutoff current) for an external load above 100 Ω is 13 GW.

  10. All-solid-state repetitive semiconductor opening switch-based short pulse generator.

    PubMed

    Ding, Zhenjie; Hao, Qingsong; Hu, Long; Su, Jiancang; Liu, Guozhi

    2009-09-01

    The operating characteristics of a semiconductor opening switch (SOS) are determined by its pumping circuit parameters. SOS is still able to cut off the current when pumping current duration falls to the order of tens of nanoseconds and a short pulse forms simultaneously in the output load. An all-solid-state repetitive SOS-based short pulse generator (SPG100) with a three-level magnetic pulse compression unit was successfully constructed. The generator adopts magnetic pulse compression unit with metallic glass and ferrite cores, which compresses a 600 V, 10 mus primary pulse into short pulse with forward pumping current of 825 A, 60 ns and reverse pumping current of 1.3 kA, 30 ns. The current is sent to SOS in which the reverse pumping current is interrupted. The generator is capable of providing a pulse with the voltage of 120 kV and duration of 5-6 ns while output load being 125 Omega. The highest repetition rate is up to 1 kHz. PMID:19791935

  11. Dynamics of morphology-dependent resonances by openness in dielectric disks for TE polarization

    SciTech Connect

    Cho, Jinhang; Rim, Sunghwan; Kim, Chil-Min

    2011-04-15

    We have studied the parametric evolution of morphology-dependent resonances according to the change of openness in a two-dimensional dielectric microdisk for transverse-electric polarization. We found that the dynamics exhibit avoided resonance crossings between the inner and outer resonances even though the corresponding billiard is integrable. Due to these recondite avoidances, inner and outer resonances can be exchanged and the quality (Q) factor of inner resonances is strongly affected. We analyze the diverse phenomena arising from these dynamics including the avoided crossings.

  12. Dynamical Generation of Topological Magnetic Lattices for Ultracold Atoms.

    PubMed

    Yu, Jinlong; Xu, Zhi-Fang; Lü, Rong; You, Li

    2016-04-01

    We propose a scheme to dynamically synthesize a space-periodic effective magnetic field for neutral atoms by time-periodic magnetic field pulses. When atomic spin adiabatically follows the direction of the effective magnetic field, an adiabatic scalar potential together with a geometric vector potential emerges for the atomic center-of-mass motion, due to the Berry phase effect. While atoms hop between honeycomb lattice sites formed by the minima of the adiabatic potential, complex Peierls phase factors in the hopping coefficients are induced by the vector potential, and these phase factors facilitate a topological Chern insulator. With further tuning of external parameters, both a topological phase transition and topological flat bands can be achieved, highlighting realistic prospects for studying strongly correlated phenomena in this system. Our Letter presents an alternative pathway towards creating and manipulating topological states of ultracold atoms by magnetic fields. PMID:27104703

  13. Dynamical Generation of Topological Magnetic Lattices for Ultracold Atoms

    NASA Astrophysics Data System (ADS)

    Yu, Jinlong; Xu, Zhi-Fang; Lü, Rong; You, Li

    2016-04-01

    We propose a scheme to dynamically synthesize a space-periodic effective magnetic field for neutral atoms by time-periodic magnetic field pulses. When atomic spin adiabatically follows the direction of the effective magnetic field, an adiabatic scalar potential together with a geometric vector potential emerges for the atomic center-of-mass motion, due to the Berry phase effect. While atoms hop between honeycomb lattice sites formed by the minima of the adiabatic potential, complex Peierls phase factors in the hopping coefficients are induced by the vector potential, and these phase factors facilitate a topological Chern insulator. With further tuning of external parameters, both a topological phase transition and topological flat bands can be achieved, highlighting realistic prospects for studying strongly correlated phenomena in this system. Our Letter presents an alternative pathway towards creating and manipulating topological states of ultracold atoms by magnetic fields.

  14. SWIFT: a dynamical model of saccade generation during reading.

    PubMed

    Engbert, Ralf; Nuthmann, Antje; Richter, Eike M; Kliegl, Reinhold

    2005-10-01

    Mathematical models have become an important tool for understanding the control of eye movements during reading. Main goals of the development of the SWIFT model (R. Engbert, A. Longtin, & R. Kliegl, 2002) were to investigate the possibility of spatially distributed processing and to implement a general mechanism for all types of eye movements observed in reading experiments. The authors present an advanced version of SWIFT that integrates properties of the oculomotor system and effects of word recognition to explain many of the experimental phenomena faced in reading research. They propose new procedures for the estimation of model parameters and for the test of the model's performance. They also present a mathematical analysis of the dynamics of the SWIFT model. Finally, within this framework, they present an analysis of the transition from parallel to serial processing. PMID:16262468

  15. The dynamic of FUS-induced BBB Opening in Mouse Brain assessed by contrast enhanced MRI

    NASA Astrophysics Data System (ADS)

    Jenne, Jürgen W.; Krafft, Axel J.; Maier, Florian; Krause, Marie N.; Kleber, Susanne; Huber, Peter E.; Martin-Villalba, Ana; Bock, Michael

    2010-03-01

    Focused ultrasound (FUS) in combination with the administration of gas-filled microbubbles, can induce a localized and reversible opening of the blood brain barrier (BBB). Contrast enhanced magnetic resonance imaging (MRI) has been demonstrated as a precise tool to monitor such a local BBB disruption. However, the opening/closing mechanisms of the BBB with FUS are still largely unknown. In this ongoing project, we study the BBB opening dynamics in mouse brain comparing an interstitial and an intravascular MR contrast agent (CA). FUS in mouse brain was performed with an MRI compatible treatment setup (1.7 MHz fix-focus US transducer, f' = 68 mm, NA = 0.44; focus: 8.1 mm length; O/ = 1.1 mm) in a 1.5 T whole body MRI system. For BBB opening, forty 10 ms-long FUS-pulses were applied at a repetition rate of 1 Hz at 1 MPa. The i.v. administration of the micro bubbles (50 μl SonoVue®) was started simultaneously with FUS exposure. To analyze the BBB opening process, short-term and long-term MRI signal dynamics of the interstitial MR contrast agent Magnevist® and the intravascular CA Vasovist® (Bayer-Schering) were studied. To assess short-term signal dynamics, T1-weighted inversion recovery turbo FLASH images (1s) were repeatedly acquired. Repeated 3D FLASH acquisitions (90 s) were used to assess long-term MRI signal dynamics. The short-term MRI signal enhancements showed comparable time constants for both types of MR contrast agents: 1.1 s (interstitial) vs. 0.8 s (intravascular). This time constant may serve as a time constant of the BBB opening process with the given FUS exposure parameters. For the long-term signal dynamics the intravascular CA (62±10 min) showed a fife times greater time constant as the interstitial contrast agent (12±10 min). This might be explained by the high molecular weight (˜60 kDa) of the intravascular Vasovist due to its reversible binding to blood serum albumin resulting in a prolonged half-life in the blood stream compared to the

  16. Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions

    NASA Astrophysics Data System (ADS)

    Zobač, Vladmír; Lewis, James P.; Jelínek, Pavel

    2016-07-01

    We report non-adiabatic molecular dynamic simulations of the ring opening reaction of diarylethene (DAE) derivative molecules, both free standing and embedded between gold electrodes. Simulations are performed by the surface hopping method employing density functional theory. Typically, the free-standing molecules exhibit large quantum yields to open and close; however the process is quenched for the molecules embedded between electrodes. Our simulations reveal the importance of the DAE side chemical groups, which explain the efficiency of the quenching process. Namely, delocalization of the LUMO state contributes to electronic coupling between the molecule and electrodes, suppressing or enhancing the reaction process. The simulations indicate that a proper choice of the chemical side group, which provides the strong localization of the LUMO state, can substantially diminish the quenching mechanism. Additionally, we analyze a strong dependency of the quantum yield of the opening reaction coming from the mechanical strength of the molecules.

  17. Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions.

    PubMed

    Zobač, Vladmír; Lewis, James P; Jelínek, Pavel

    2016-07-15

    We report non-adiabatic molecular dynamic simulations of the ring opening reaction of diarylethene (DAE) derivative molecules, both free standing and embedded between gold electrodes. Simulations are performed by the surface hopping method employing density functional theory. Typically, the free-standing molecules exhibit large quantum yields to open and close; however the process is quenched for the molecules embedded between electrodes. Our simulations reveal the importance of the DAE side chemical groups, which explain the efficiency of the quenching process. Namely, delocalization of the LUMO state contributes to electronic coupling between the molecule and electrodes, suppressing or enhancing the reaction process. The simulations indicate that a proper choice of the chemical side group, which provides the strong localization of the LUMO state, can substantially diminish the quenching mechanism. Additionally, we analyze a strong dependency of the quantum yield of the opening reaction coming from the mechanical strength of the molecules. PMID:27255903

  18. Quantum Information Biology: From Theory of Open Quantum Systems to Adaptive Dynamics

    NASA Astrophysics Data System (ADS)

    Asano, Masanari; Basieva, Irina; Khrennikov, Andrei; Ohya, Masanori; Tanaka, Yoshiharu; Yamato, Ichiro

    This chapter reviews quantum(-like) information biology (QIB). Here biology is treated widely as even covering cognition and its derivatives: psychology and decision making, sociology, and behavioral economics and finances. QIB provides an integrative description of information processing by bio-systems at all scales of life: from proteins and cells to cognition, ecological and social systems. Mathematically QIB is based on the theory of adaptive quantum systems (which covers also open quantum systems). Ideologically QIB is based on the quantum-like (QL) paradigm: complex bio-systems process information in accordance with the laws of quantum information and probability. This paradigm is supported by plenty of statistical bio-data collected at all bio-scales. QIB re ects the two fundamental principles: a) adaptivity; and, b) openness (bio-systems are fundamentally open). In addition, quantum adaptive dynamics provides the most generally possible mathematical representation of these principles.

  19. Formulas for predicting the dynamic performance of ROCOF relays for embedded generation applications

    SciTech Connect

    Vieira, J.C. M.; Freitas, Walmir; Huang, Zhenyu; Xu, Wilsun; Morelato, A.

    2006-07-13

    A set of formulas directly predict the performance of rate-of-change-of-frequency (ROCOF) relays used to detect islanding of embedded synchronous generators. The formulas are analytically derived from the dynamic model of the generator and relay. Dynamic simulation results obtained using a representative distribution system confirm the validity and accuracy. The formulas presented are a useful tool for protection engineers; they can be used, for example, to assess the effectiveness of anti-islanding schemes based on ROCOF relays, or to assist the selection of relay settings, significantly reducing the number of repeated dynamic simulations necessary to carry out such studies.

  20. Influence of external magnetic field on dynamics of open quantum systems

    SciTech Connect

    Kalandarov, Sh. A.; Kanokov, Z.; Adamian, G. G.; Antonenko, N. V.

    2007-03-15

    The influence of an external magnetic field on the non-Markovian dynamics of an open two-dimensional quantum system is investigated. The fluctuations of collective coordinate and momentum and transport coefficients are studied for a charged harmonic oscillator linearly coupled to a neutral bosonic heat bath. It is shown that the dissipation of collective energy slows down with increasing strength of the external magnetic field. The role of magnetic field in the diffusion processes is illustrated by several examples.

  1. Quantifying the behavior of price dynamics at opening time in stock market

    NASA Astrophysics Data System (ADS)

    Ochiai, Tomoshiro; Takada, Hideyuki; Nacher, Jose C.

    2014-11-01

    The availability of huge volume of financial data has offered the possibility for understanding the markets as a complex system characterized by several stylized facts. Here we first show that the time evolution of the Japan’s Nikkei stock average index (Nikkei 225) futures follows the resistance and breaking-acceleration effects when the complete time series data is analyzed. However, in stock markets there are periods where no regular trades occur between the close of the market on one day and the next day’s open. To examine these time gaps we decompose the time series data into opening time and intermediate time. Our analysis indicates that for the intermediate time, both the resistance and the breaking-acceleration effects are still observed. However, for the opening time there are almost no resistance and breaking-acceleration effects, and volatility is always constantly high. These findings highlight unique dynamic differences between stock markets and forex market and suggest that current risk management strategies may need to be revised to address the absence of these dynamic effects at the opening time.

  2. Frontal dynamic aphasia in progressive supranuclear palsy: Distinguishing between generation and fluent sequencing of novel thoughts.

    PubMed

    Robinson, Gail A; Spooner, Donna; Harrison, William J

    2015-10-01

    Frontal dynamic aphasia is characterised by a profound reduction in spontaneous speech despite well-preserved naming, repetition and comprehension. Since Luria (1966, 1970) designated this term, two main forms of dynamic aphasia have been identified: one, a language-specific selection deficit at the level of word/sentence generation, associated with left inferior frontal lesions; and two, a domain-general impairment in generating multiple responses or connected speech, associated with more extensive bilateral frontal and/or frontostriatal damage. Both forms of dynamic aphasia have been interpreted as arising due to disturbances in early prelinguistic conceptual preparation mechanisms that are critical for language production. We investigate language-specific and domain-general accounts of dynamic aphasia and address two issues: one, whether deficits in multiple conceptual preparation mechanisms can co-occur; and two, the contribution of broader cognitive processes such as energization, the ability to initiate and sustain response generation over time, to language generation failure. Thus, we report patient WAL who presented with frontal dynamic aphasia in the context of progressive supranuclear palsy (PSP). WAL was given a series of experimental tests that showed that his dynamic aphasia was not underpinned by a language-specific deficit in selection or in microplanning. By contrast, WAL presented with a domain-general deficit in fluent sequencing of novel thoughts. The latter replicated the pattern documented in a previous PSP patient (Robinson, et al., 2006); however, unique to WAL, generating novel thoughts was impaired but there was no evidence of a sequencing deficit because perseveration was absent. Thus, WAL is the first unequivocal case to show a distinction between novel thought generation and subsequent fluent sequencing. Moreover, WAL's generation deficit encompassed verbal and non-verbal responses, showing a similar (but more profoundly reduced) pattern

  3. Influence of open water bodies on the generation of summertime convection over the Canadian Prairies

    NASA Astrophysics Data System (ADS)

    Joshi, D.; Bélair, S.; Carrera, M. L.; Leroyer, S.

    2014-12-01

    There are still numerous water features on the Canadian landscape that are not monitored. Specifically, there are landscape features (e.g. the prairies and Canadian shield regions of North America) that are ephemeral in nature and have a significant influence on convective storm generation and local weather patterns through turbulent exchanges of sensible and latent heat between land and the atmosphere. In this study we perform a series of numerical experiments with the GEM (Global Environmental Multiscale model) model at 2.5 km resolution to examine the sensitivity of the atmospheric boundary layer to the presence of open water bodies. At present the land-water fraction in the GEM model is specified by means of static geophysical databases which do not change annually. Uncertainty is introduced into this land-water fraction and the sensitivity of the resulting soil moisture and precipitation is quantified for a series of convective precipitation events over Alberta for the summer 2014 period.

  4. Statistical Ring Opening Metathesis Copolymerization of Norbornene and Cyclopentene by Grubbs' 1st-Generation Catalyst.

    PubMed

    Nikovia, Christiana; Maroudas, Andreas-Philippos; Goulis, Panagiotis; Tzimis, Dionysios; Paraskevopoulou, Patrina; Pitsikalis, Marinos

    2015-01-01

    Statistical copolymers of norbornene (NBE) with cyclopentene (CP) were prepared by ring-opening metathesis polymerization, employing the 1st-generation Grubbs' catalyst, in the presence or absence of triphenylphosphine, PPh₃. The reactivity ratios were estimated using the Finemann-Ross, inverted Finemann-Ross, and Kelen-Tüdos graphical methods, along with the computer program COPOINT, which evaluates the parameters of binary copolymerizations from comonomer/copolymer composition data by integrating a given copolymerization equation in its differential form. Structural parameters of the copolymers were obtained by calculating the dyad sequence fractions and the mean sequence length, which were derived using the monomer reactivity ratios. The kinetics of thermal decomposition of the copolymers along with the respective homopolymers was studied by thermogravimetric analysis within the framework of the Ozawa-Flynn-Wall and Kissinger methodologies. Finally, the effect of triphenylphosphine on the kinetics of copolymerization, the reactivity ratios, and the kinetics of thermal decomposition were examined. PMID:26343620

  5. Is {open_quotes}early commitment{close_quotes} in plan generation ever a good idea?

    SciTech Connect

    Joslin, D.; Pollack, M.E.

    1996-12-31

    Partial-Order Causal Link planners typically take a {open_quotes}least-commitment{close_quotes} approach to some decisions (notably, step ordering), postponing those decisions until constraints force them to be made. However, these planners rely to some degree on early commitments in making other types of decisions, including threat resolution and operator choice. We show why existing planners cannot support full least-commitment decision-making, and present an alternative approach that can. The approach has been implemented in the Descartes system, which we describe. We also provide experimental results that demonstrate that a least-commitment approach to planning can be profitably extended beyond what is done in POCL and similar planners, but that taking a least-commitment approach to every planning decision can be inefficient: early commitment in plan generation is sometimes a good idea.

  6. NeuroPG: open source software for optical pattern generation and data acquisition

    PubMed Central

    Avants, Benjamin W.; Murphy, Daniel B.; Dapello, Joel A.; Robinson, Jacob T.

    2015-01-01

    Patterned illumination using a digital micromirror device (DMD) is a powerful tool for optogenetics. Compared to a scanning laser, DMDs are inexpensive and can easily create complex illumination patterns. Combining these complex spatiotemporal illumination patterns with optogenetics allows DMD-equipped microscopes to probe neural circuits by selectively manipulating the activity of many individual cells or many subcellular regions at the same time. To use DMDs to study neural activity, scientists must develop specialized software to coordinate optical stimulation patterns with the acquisition of electrophysiological and fluorescence data. To meet this growing need we have developed an open source optical pattern generation software for neuroscience—NeuroPG—that combines, DMD control, sample visualization, and data acquisition in one application. Built on a MATLAB platform, NeuroPG can also process, analyze, and visualize data. The software is designed specifically for the Mightex Polygon400; however, as an open source package, NeuroPG can be modified to incorporate any data acquisition, imaging, or illumination equipment that is compatible with MATLAB’s Data Acquisition and Image Acquisition toolboxes. PMID:25784873

  7. Reconfigurable optical interconnections via dynamic computer-generated holograms

    NASA Technical Reports Server (NTRS)

    Liu, Hua-Kuang (Inventor); Zhou, Shaomin (Inventor)

    1994-01-01

    A system is proposed for optically providing one-to-many irregular interconnections, and strength-adjustable many-to-many irregular interconnections which may be provided with strengths (weights) w(sub ij) using multiple laser beams which address multiple holograms and means for combining the beams modified by the holograms to form multiple interconnections, such as a cross-bar switching network. The optical means for interconnection is based on entering a series of complex computer-generated holograms on an electrically addressed spatial light modulator for real-time reconfigurations, thus providing flexibility for interconnection networks for largescale practical use. By employing multiple sources and holograms, the number of interconnection patterns achieved is increased greatly.

  8. Reconfigurable Optical Interconnections Via Dynamic Computer-Generated Holograms

    NASA Technical Reports Server (NTRS)

    Liu, Hua-Kuang (Inventor); Zhou, Shao-Min (Inventor)

    1996-01-01

    A system is presented for optically providing one-to-many irregular interconnections, and strength-adjustable many-to-many irregular interconnections which may be provided with strengths (weights) w(sub ij) using multiple laser beams which address multiple holograms and means for combining the beams modified by the holograms to form multiple interconnections, such as a cross-bar switching network. The optical means for interconnection is based on entering a series of complex computer-generated holograms on an electrically addressed spatial light modulator for real-time reconfigurations, thus providing flexibility for interconnection networks for large-scale practical use. By employing multiple sources and holograms, the number of interconnection patterns achieved is increased greatly.

  9. Dynamical generation and detection of entanglement in neutral leviton pairs

    NASA Astrophysics Data System (ADS)

    Dasenbrook, David; Flindt, Christian

    2015-10-01

    The entanglement of coherently split electron-hole pairs in an electronic conductor is typically not considered accessible due to particle number conservation and fermionic superselection rules. We demonstrate here that current cross-correlation measurements at the outputs of an electronic Mach-Zehnder interferometer can nevertheless provide a robust witness of electron-hole entanglement. Specifically, we consider neutral excitations generated by modulating the transmission of an unbiased quantum point contact periodically in time. For an optimized modulation profile, an entangled state with one positively-charged leviton (a hole) and one negatively-charged leviton (an electron) gets delocalized over the two paths of the interferometer and is detected at the output arms. We evaluate the influence of finite electronic temperatures and dephasing corresponding to recent experiments.

  10. Dynamic behaviors of approximately ellipsoidal microbubbles photothermally generated by a graphene oxide-microheater

    PubMed Central

    Xing, Xiaobo; Zheng, Jiapeng; Li, Fengjia; Sun, Chao; Cai, Xiang; Zhu, Debin; Lei, Liang; Wu, Ting; Zhou, Bin; Evans, Julian; Chen, Ziyi

    2014-01-01

    Thermal microbubbles generally grow directly from the heater and are spherical to minimize surface tension. We demonstrate a novel type of microbubble indirectly generated from a graphene oxide-microheater. Graphene oxide's photothermal properties allowed for efficient generation of a thermal gradient field on the microscale. A series of approximately ellipsoidal microbubbles were generated on the smooth microwire based on heterogeneous nucleation. Other dynamic behaviors induced by the microheater such as constant growth, directional transport and coalescence were also investigated experimentally and theoretically. The results are not only helpful for understanding the bubble dynamics but also useful for developing novel photothermal bubble-based devices. PMID:25124694

  11. Response of borehole extensometers to explosively generated dynamic loads

    SciTech Connect

    Patrick, W.C.; Brough, W.G.

    1980-08-25

    Commercially available, hydraulically anchored, multiple-point borehole extensometers (MPBX) were evaluated with respect to response to dynamic loads produced by explosions. This study is part of the DOE-funded Spent Fuel Test-Climax (SFT-C), currently being conducted in the Climax granitic stock at the Nevada Test Site. The SFT-C is an investigation of the feasibility of short-term storage and retrieval of spent nuclear reactor fuel assemblies at a plausible repository depth in granitic rock. Eleven spent fuel assemblies are stored at a depth of 420 m for three to five years, and will then be retrieved. MPBX units are used in the SFT-C to measure both excavation-induced and thermally induced rock displacements. Long-term reliability of extensometers in this hostile environment is essential in order to obtain valid data during the course of this test. Research to date shows conclusively that extensometers of this type continue to function reliably even though subjected to accelerations of 1.8 g; research also implies that they function well though subjected to accelerations in excess of 100 g. MPBX survivability during the first four months of testing at ambient temperatures was about 90 percent.

  12. Dynamical mass generation in strongly coupled quantum electrodynamics with weak magnetic fields

    SciTech Connect

    Ayala, Alejandro; Raya, Alfredo; Rojas, Eduardo; Bashir, Adnan

    2006-05-15

    We study the dynamical generation of masses for fundamental fermions in quenched quantum electrodynamics in the presence of weak magnetic fields using Schwinger-Dyson equations. Contrary to the case where the magnetic field is strong, in the weak field limit the coupling should exceed certain critical value in order for the generation of masses to take place, just as in the case where no magnetic field is present. The weak field limit is defined as eB<dynamically generated mass in the absence of the field. We carry out a numerical analysis to study the magnetic field dependence of the mass function above critical coupling and show that in this regime the dynamically generated mass and the chiral condensate for the lowest Landau level increase proportionally to (eB){sup 2}.

  13. Learning through the Ages? Generational Inequalities and Inter-Generational Dynamics of Lifelong Learning

    ERIC Educational Resources Information Center

    Field, John

    2013-01-01

    This exploratory paper considers the concept of generation in the context of learning across the life course. Although researchers have often found considerable inequalities in participation by age, as well as strongly articulated attitudinal differences, there have so far been only a handful of studies that have explored these patterns through…

  14. Dynamic Gate Product and Artifact Generation from System Models

    NASA Technical Reports Server (NTRS)

    Jackson, Maddalena; Delp, Christopher; Bindschadler, Duane; Sarrel, Marc; Wollaeger, Ryan; Lam, Doris

    2011-01-01

    Model Based Systems Engineering (MBSE) is gaining acceptance as a way to formalize systems engineering practice through the use of models. The traditional method of producing and managing a plethora of disjointed documents and presentations ("Power-Point Engineering") has proven both costly and limiting as a means to manage the complex and sophisticated specifications of modern space systems. We have developed a tool and method to produce sophisticated artifacts as views and by-products of integrated models, allowing us to minimize the practice of "Power-Point Engineering" from model-based projects and demonstrate the ability of MBSE to work within and supersede traditional engineering practices. This paper describes how we have created and successfully used model-based document generation techniques to extract paper artifacts from complex SysML and UML models in support of successful project reviews. Use of formal SysML and UML models for architecture and system design enables production of review documents, textual artifacts, and analyses that are consistent with one-another and require virtually no labor-intensive maintenance across small-scale design changes and multiple authors. This effort thus enables approaches that focus more on rigorous engineering work and less on "PowerPoint engineering" and production of paper-based documents or their "office-productivity" file equivalents.

  15. Reactive molecular dynamics of network polymers: Generation, characterization and mechanical properties

    NASA Astrophysics Data System (ADS)

    Shankar, Chandrashekar

    The goal of this research was to gain a fundamental understanding of the properties of networks created by the ring opening metathesis polymerization (ROMP) of dicyclopentadiene (DCPD) used in self-healing materials. To this end we used molecular simulation methods to generate realistic structures of DCPD networks, characterize their structures, and determine their mechanical properties. Density functional theory (DFT) calculations, complemented by structural information derived from molecular dynamics simulations were used to reconstruct experimental Raman spectra and differential scanning calorimetry (DSC) data. We performed coarse-grained simulations comparing networks generated via the ROMP reaction process and compared them to those generated via a RANDOM process, which led to the fundamental realization that the polymer topology has a unique influence on the network properties. We carried out fully atomistic simulations of DCPD using a novel algorithm for recreating ROMP reactions of DCPD molecules. Mechanical properties derived from these atomistic networks are in excellent agreement with those obtained from coarse-grained simulations in which interactions between nodes are subject to angular constraints. This comparison provides self-consistent validation of our simulation results and helps to identify the level of detail necessary for the coarse-grained interaction model. Simulations suggest networks can classified into three stages: fluid-like, rubber-like or glass-like delineated by two thresholds in degree of reaction alpha: The onset of finite magnitudes for the Young's modulus, alphaY, and the departure of the Poisson ration from 0.5, alphaP. In each stage the polymer exhibits a different predominant mechanical response to deformation. At low alpha < alphaY it flows. At alpha Y < alpha < alphaP the response is entropic with no change in internal energy. At alpha > alphaP the response is enthalpic change in internal energy. We developed graph theory

  16. STARS 2.0: 2nd-generation open-source archiving and query software

    NASA Astrophysics Data System (ADS)

    Winegar, Tom

    2008-07-01

    The Subaru Telescope is in process of developing an open-source alternative to the 1st-generation software and databases (STARS 1) used for archiving and query. For STARS 2, we have chosen PHP and Python for scripting and MySQL as the database software. We have collected feedback from staff and observers, and used this feedback to significantly improve the design and functionality of our future archiving and query software. Archiving - We identified two weaknesses in 1st-generation STARS archiving software: a complex and inflexible table structure and uncoordinated system administration for our business model: taking pictures from the summit and archiving them in both Hawaii and Japan. We adopted a simplified and normalized table structure with passive keyword collection, and we are designing an archive-to-archive file transfer system that automatically reports real-time status and error conditions and permits error recovery. Query - We identified several weaknesses in 1st-generation STARS query software: inflexible query tools, poor sharing of calibration data, and no automatic file transfer mechanisms to observers. We are developing improved query tools and sharing of calibration data, and multi-protocol unassisted file transfer mechanisms for observers. In the process, we have redefined a 'query': from an invisible search result that can only transfer once in-house right now, with little status and error reporting and no error recovery - to a stored search result that can be monitored, transferred to different locations with multiple protocols, reporting status and error conditions and permitting recovery from errors.

  17. Monte Carlo method based radiative transfer simulation of stochastic open forest generated by circle packing application

    NASA Astrophysics Data System (ADS)

    Jin, Shengye; Tamura, Masayuki

    2013-10-01

    Monte Carlo Ray Tracing (MCRT) method is a versatile application for simulating radiative transfer regime of the Solar - Atmosphere - Landscape system. Moreover, it can be used to compute the radiation distribution over a complex landscape configuration, as an example like a forest area. Due to its robustness to the complexity of the 3-D scene altering, MCRT method is also employed for simulating canopy radiative transfer regime as the validation source of other radiative transfer models. In MCRT modeling within vegetation, one basic step is the canopy scene set up. 3-D scanning application was used for representing canopy structure as accurately as possible, but it is time consuming. Botanical growth function can be used to model the single tree growth, but cannot be used to express the impaction among trees. L-System is also a functional controlled tree growth simulation model, but it costs large computing memory. Additionally, it only models the current tree patterns rather than tree growth during we simulate the radiative transfer regime. Therefore, it is much more constructive to use regular solid pattern like ellipsoidal, cone, cylinder etc. to indicate single canopy. Considering the allelopathy phenomenon in some open forest optical images, each tree in its own `domain' repels other trees. According to this assumption a stochastic circle packing algorithm is developed to generate the 3-D canopy scene in this study. The canopy coverage (%) and the tree amount (N) of the 3-D scene are declared at first, similar to the random open forest image. Accordingly, we randomly generate each canopy radius (rc). Then we set the circle central coordinate on XY-plane as well as to keep circles separate from each other by the circle packing algorithm. To model the individual tree, we employ the Ishikawa's tree growth regressive model to set the tree parameters including DBH (dt), tree height (H). However, the relationship between canopy height (Hc) and trunk height (Ht) is

  18. Dynamic visual cues induce jaw opening and closing by tiger beetles during pursuit of prey

    PubMed Central

    Zurek, Daniel B.; Perkins, Madeleine Q.; Gilbert, Cole

    2014-01-01

    In dynamic locomotory contexts, visual cues often trigger adaptive behaviour by the viewer, yet studies investigating how animals determine impending collisions typically employ either stationary viewers or objects. Here, we describe a dynamic situation of visually guided prey pursuit in which both impending prey contact and escape elicit observable adaptive behaviours in the pursuer, a predatory beetle. We investigated which visual cues may independently control opening and closing of the beetle's jaws during chases of prey dummies. Jaw opening and closing typically occur when prey is within the 60° binocular field, but not at specific distances, angular sizes or time-to-collision. We show that a sign change in the expansion rate of the target image precedes jaw opening (16 ms) and closing (35 ms), signalling to the beetle that it is gaining on the target or that the target is getting away. We discuss the ‘sloppiness' of such variation in the lag of the behavioural response, especially jaw closing, as an adaptation to uncertainty about target position due to degradation of the target image by motion blur from the fast-running beetle. PMID:25376803

  19. Dynamic Network Drivers of Seizure Generation, Propagation and Termination in Human Neocortical Epilepsy.

    PubMed

    Khambhati, Ankit N; Davis, Kathryn A; Oommen, Brian S; Chen, Stephanie H; Lucas, Timothy H; Litt, Brian; Bassett, Danielle S

    2015-12-01

    The epileptic network is characterized by pathologic, seizure-generating 'foci' embedded in a web of structural and functional connections. Clinically, seizure foci are considered optimal targets for surgery. However, poor surgical outcome suggests a complex relationship between foci and the surrounding network that drives seizure dynamics. We developed a novel technique to objectively track seizure states from dynamic functional networks constructed from intracranial recordings. Each dynamical state captures unique patterns of network connections that indicate synchronized and desynchronized hubs of neural populations. Our approach suggests that seizures are generated when synchronous relationships near foci work in tandem with rapidly changing desynchronous relationships from the surrounding epileptic network. As seizures progress, topographical and geometrical changes in network connectivity strengthen and tighten synchronous connectivity near foci-a mechanism that may aid seizure termination. Collectively, our observations implicate distributed cortical structures in seizure generation, propagation and termination, and may have practical significance in determining which circuits to modulate with implantable devices. PMID:26680762

  20. On trajectory generation for flexible space crane: Inverse dynamics analysis by LATDYN

    NASA Technical Reports Server (NTRS)

    Chen, G.-S.; Housner, J. M.; Wu, S.-C.; Chang, C.-W.

    1989-01-01

    For future in-space construction facility, one or more space cranes capable of manipulating and positioning large and massive spacecraft components will be needed. Inverse dynamics was extensively studied as a basis for trajectory generation and control of robot manipulators. The focus here is on trajectory generation in the gross-motion phase of space crane operation. Inverse dynamics of the flexible crane body is much more complex and intricate as compared with rigid robot link. To model and solve the space crane's inverse dynamics problem, LATDYN program which employs a three-dimensional finite element formulation for the multibody truss-type structures will be used. The formulation is oriented toward a joint dominated structure which is suitable for the proposed space crane concept. To track a planned trajectory, procedures will be developed to obtain the actuation profile and dynamics envelope which are pertinent to the design and performance requirements of the space crane concept.

  1. Probing the holographic principle using dynamical gauge effects from open spin-orbit coupling

    NASA Astrophysics Data System (ADS)

    Zhao, Jianshi; Price, Craig; Liu, Qi; Gemelke, Nathan

    2016-05-01

    Dynamical gauge fields result from locally defined symmetries and an effective over-labeling of quantum states. Coupling atoms weakly to a reservoir of laser modes can create an effective dynamical gauge field purely due to the disregard of information in the optical states. Here we report measurements revealing effects of open spin-orbit coupling in a system where an effective model can be formed from a non-abelian SU(2) × U(1) field theory following the Yang-Mills construct. Forming a close analogy to dynamical gauge effects in quantum chromodynamics, we extract a measure of atomic motion which reveals the analog of a closing mass gap for the relevant gauge boson, shedding insight on long standing open problems in gauge-fixing scale anomalies. Using arguments following the holographic principle, we measure scaling relations which can be understood by quantifying information present in the local potential. New prospects using these techniques for developing fractionalization of multi-particle and macroscopic systems using dissipative and non-abelian gauge fields will also be discussed. We acknowledge support from NSF Award No. 1068570, and the Charles E. Kaufman Foundation.

  2. Studying dynamic chaos in microwave ring generators based on normally magnetized ferromagnetic film

    NASA Astrophysics Data System (ADS)

    Kondrashov, A. V.; Ustinov, A. B.; Kalinikos, B. A.

    2016-02-01

    We present results of an experimental investigation of the transition to a microwave dynamic chaos regime in ring oscillators based on normally magnetized yttrium iron garnet (YIG) films. It is established that an increase in the ring gain leads to the sequential generation of monochromatic, periodic, quasi-periodic, and chaotic signals. The quasi-periodic regime is characterized by the appearance of secondary modulation of the signal amplitude. In the regime of dynamic chaos generation, the parameters can be controlled by gain of the ring.

  3. Reconstruction of correlation-driven electron-hole dynamics by high-harmonic-generation spectroscopy

    NASA Astrophysics Data System (ADS)

    Leeuwenburgh, Jonathan; Cooper, Bridgette; Averbukh, Vitali; Marangos, Jonathan P.; Ivanov, Misha

    2014-09-01

    We present detailed analysis of the recently proposed technique of high-order-harmonic generation spectroscopy of correlation-driven electron hole dynamics in atoms and molecules. This novel technique resolves Auger-type processes with attosecond-scale resolution by clocking the decay process with high-harmonic generation. The harmonic generation is driven by an attosecond, XUV pump pulse and a long-duration, infrared pulse. We present the strong-field-approximation-based theory of such an XUV-initiated high-order-harmonic generation process. We detail different ways of recovering the hole survival probability by altering experimental parameters to change the time-energy mapping of the harmonics. The various reconstruction methods are then simulated for M4,5NN Auger decay in krypton and molecular-orbital breakdown dynamics in trans-butadiene and propanal.

  4. A nonlinear dynamic model of a once-through, helical-coil steam generator

    SciTech Connect

    Abdalla, M.A.

    1993-07-01

    A dynamic model of a once-through, helical-coil steam generator is presented. The model simulates the advanced liquid metal reactor superheated cycle steam generator with a four-region, moving-boundary, drift-flux model. The model is described by a set of nonlinear differential equations derived from the fundamental equations of conversation of mass, energy, and momentum. Sample results of steady-state and transient calculations are presented.

  5. [Generation and application of dynamic standard reference intervals for analyzing results of comparative genomic hybridization].

    PubMed

    Min'zhenkova, M E; Shilova, N V; Markova, Zh G; Antonenko, V G; Lebedev, I N; Kozlova, Iu O; Zemliakova, V V; Zolotukhina, T V

    2013-10-01

    The present work was aimed at generating the dynamic standard reference intervals (DSRI) and their application for chromosomal-aberration (CA) analysis. The evaluation of the generated DSRI was performed using the DNA samples from four patients with already known CA. High-resolution comparative genomic hybridization analysis (HR-CGH) allowed us to not only identify all of the CAs, that were not revealed by CGH, but also to detect the breakpoints and to determine the size of chromosomal imbalance. PMID:25474900

  6. Demonstration of open-quantum-system optimal control in dynamic nuclear polarization

    NASA Astrophysics Data System (ADS)

    Sheldon, S.; Cory, D. G.

    2015-10-01

    Dynamic nuclear polarization (DNP) is used in nuclear magnetic resonance to transfer polarization from electron spins to nuclear spins. The resulting nuclear polarization enhancement can, in theory, be two or three orders of magnitude depending on the sample. In solid-state systems, however, there are competing mechanisms of DNP, which, when occurring simultaneously, reduce the net polarization enhancement of the nuclear spin. We present a simple quantum description of DNP and apply optimal control theory (OCT) with an open-quantum-system framework to design pulses that select one DNP process and suppress the others. We demonstrate experimentally an order of magnitude improvement in the DNP enhancement using OCT pulses.

  7. The Development of Dynamic Inquiry Performances within an Open Inquiry Setting: A Comparison to Guided Inquiry Setting

    ERIC Educational Resources Information Center

    Sadeh, Irit; Zion, Michal

    2009-01-01

    Dynamic inquiry learning emphasizes aspects of change, intellectual flexibility, and critical thinking. Dynamic inquiry learning is characterized by the following criteria: learning as a process, changes during the inquiry, procedural understanding, and affective points of view. This study compared the influence of open versus guided inquiry…

  8. Small Open Chemical Systems Theory: Its Implications to Darwinian Evolution Dynamics, Complex Self-Organization and Beyond

    NASA Astrophysics Data System (ADS)

    Qian, Hong

    2014-10-01

    The study of biological cells in terms of mesoscopic, nonequilibrium, nonlinear, stochastic dynamics of open chemical systems provides a paradigm for other complex, self-organizing systems with ultra-fast stochastic fluctuations, short-time deterministic nonlinear dynamics, and long-time evolutionary behavior with exponentially distributed rare events, discrete jumps among punctuated equilibria, and catastrophe.

  9. Opening of ATP-sensitive K(+) (KATP) channels enhance hydroxyl radical generation induced by MPP(+) in rat striatum.

    PubMed

    Obata, Toshio; Nakashima, Michiko

    2016-07-15

    The present study examined whether opening of adenosine triphosphate (ATP) sensitive K(+) (KATP) channels can enhance 1-methyl-4-phenylpyridinium (MPP(+))-induced hydroxyl radical (OH) generation in rat striatum. Rats were anesthetized, and sodium salicylate in Ringer's solution (0.5nmol/ml per min) was infused through a microdialysis probe to detect the generation of OH as reflected by the non-enzymatic formation of 2.3-dihydroxybenzoic acid (DHBA) in the striatum. MPP(+) (5mM) enhanced generation of OH with concomitant increased efflux of dopamine (DA). Cromakalim (100μM), a KATP channel opener, through the microdialysis probe significantly increased both DA efflux and OH formation induced by MPP(+). Another KATP channel opener, nicorandil (1mM), also increased the level DA or DHBA, but these changes were not significant. However, in the presence of glibenclamide (10μM), a KATP channel antagonist, and the increase of MPP(+)-induced DA or DHBA were not observed. Cromakalim (10, 50 and 100μM) increased MPP(+)-induced DHBA formation in a concentration-dependent manner. However, the effects of cromakalim in the presence of glibenclamide were abolished. These results suggest that opening of KATP channels may cause OH generation by MPP(+). PMID:27288802

  10. Automated Flight Dynamics Product Generation for the EOS AM-1 Spacecraft

    NASA Technical Reports Server (NTRS)

    Matusow, Carla

    1999-01-01

    As part of NASA's Earth Science Enterprise, the Earth Observing System (EOS) AM-1 spacecraft is designed to monitor long-term, global, environmental changes. Because of the complexity of the AM-1 spacecraft, the mission operations center requires more than 80 distinct flight dynamics products (reports). To create these products, the AM-1 Flight Dynamics Team (FDT) will use a combination of modified commercial software packages (e.g., Analytical Graphic's Satellite ToolKit) and NASA-developed software applications. While providing the most cost-effective solution to meeting the mission requirements, the integration of these software applications raises several operational concerns: (1) Routine product generation requires knowledge of multiple applications executing on variety of hardware platforms. (2) Generating products is a highly interactive process requiring a user to interact with each application multiple times to generate each product. (3) Routine product generation requires several hours to complete. (4) User interaction with each application introduces the potential for errors, since users are required to manually enter filenames and input parameters as well as run applications in the correct sequence. Generating products requires some level of flight dynamics expertise to determine the appropriate inputs and sequencing. To address these issues, the FDT developed an automation software tool called AutoProducts, which runs on a single hardware platform and provides all necessary coordination and communication among the various flight dynamics software applications. AutoProducts, autonomously retrieves necessary files, sequences and executes applications with correct input parameters, and deliver the final flight dynamics products to the appropriate customers. Although AutoProducts will normally generate pre-programmed sets of routine products, its graphical interface allows for easy configuration of customized and one-of-a-kind products. Additionally, Auto

  11. EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics.

    PubMed

    Heller, Davide; Hoppe, Andreas; Restrepo, Simon; Gatti, Lorenzo; Tournier, Alexander L; Tapon, Nicolas; Basler, Konrad; Mao, Yanlan

    2016-01-11

    Epithelia grow and undergo extensive rearrangements to achieve their final size and shape. Imaging the dynamics of tissue growth and morphogenesis is now possible with advances in time-lapse microscopy, but a true understanding of their complexities is limited by automated image analysis tools to extract quantitative data. To overcome such limitations, we have designed a new open-source image analysis toolkit called EpiTools. It provides user-friendly graphical user interfaces for accurately segmenting and tracking the contours of cell membrane signals obtained from 4D confocal imaging. It is designed for a broad audience, especially biologists with no computer-science background. Quantitative data extraction is integrated into a larger bioimaging platform, Icy, to increase the visibility and usability of our tools. We demonstrate the usefulness of EpiTools by analyzing Drosophila wing imaginal disc growth, revealing previously overlooked properties of this dynamic tissue, such as the patterns of cellular rearrangements. PMID:26766446

  12. Quantum speedup of uncoupled multiqubit open system via dynamical decoupling pulses

    NASA Astrophysics Data System (ADS)

    Song, Ya-Ju; Kuang, Le-Man; Tan, Qing-Shou

    2016-06-01

    We present a method to accelerate the dynamical evolution of mutltiqubit open system by employing dynamical decoupling pulses (DDPs) when the qubits are initially in W-type states. Here the qubits are independent and coupled to local Lorentzian reservoirs. It is found that this speedup evolution can be achieved in both the weak-coupling regime and the strong-coupling regime. The essential physical mechanism behind the acceleration evolution is explained as a result of the joint action of the non-Markovianity of reservoirs and the excited-state population of qubits. It is shown that both the non-Markovianity and the excited-state population can be controlled by DDPs to realize the quantum speedup.

  13. EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics

    PubMed Central

    Heller, Davide; Hoppe, Andreas; Restrepo, Simon; Gatti, Lorenzo; Tournier, Alexander L.; Tapon, Nicolas; Basler, Konrad; Mao, Yanlan

    2016-01-01

    Summary Epithelia grow and undergo extensive rearrangements to achieve their final size and shape. Imaging the dynamics of tissue growth and morphogenesis is now possible with advances in time-lapse microscopy, but a true understanding of their complexities is limited by automated image analysis tools to extract quantitative data. To overcome such limitations, we have designed a new open-source image analysis toolkit called EpiTools. It provides user-friendly graphical user interfaces for accurately segmenting and tracking the contours of cell membrane signals obtained from 4D confocal imaging. It is designed for a broad audience, especially biologists with no computer-science background. Quantitative data extraction is integrated into a larger bioimaging platform, Icy, to increase the visibility and usability of our tools. We demonstrate the usefulness of EpiTools by analyzing Drosophila wing imaginal disc growth, revealing previously overlooked properties of this dynamic tissue, such as the patterns of cellular rearrangements. PMID:26766446

  14. Multi-valley effective mass theory for device-level modeling of open quantum dynamics

    NASA Astrophysics Data System (ADS)

    Jacobson, N. Tobias; Baczewski, Andrew D.; Frees, Adam; Gamble, John King; Montano, Ines; Moussa, Jonathan E.; Muller, Richard P.; Nielsen, Erik

    2015-03-01

    Simple models for semiconductor-based quantum information processors can provide useful qualitative descriptions of device behavior. However, as experimental implementations have matured, more specific guidance from theory has become necessary, particularly in the form of quantitatively reliable yet computationally efficient modeling. Besides modeling static device properties, improved characterization of noisy gate operations requires a more sophisticated description of device dynamics. Making use of recent developments in multi-valley effective mass theory, we discuss device-level simulations of the open system quantum dynamics of a qubit interacting with phonons and other noise sources. Sandia is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the US Department of Energy National Nuclear Security Administration under Contract No. DE-AC04-94AL85000.

  15. Average entanglement dynamics in open two-qubit systems with continuous monitoring

    NASA Astrophysics Data System (ADS)

    Guevara, Ivonne; Viviescas, Carlos

    2014-07-01

    We present a comprehensive implementation of the quantum trajectory theory for the description of the entanglement dynamics in a Markovian open quantum system made of two qubits. We introduce the average concurrence to characterize the entanglement in the system and derive a deterministic evolution equation for it that depends on the ways in which information is read from the environment. This buildt-in flexibility of the method is used to address two actual issues in quantum information: entanglement protection and entanglement estimation. We identify general physical situations in which an entanglement protection protocol based on local monitoring of the environment can be implemented. Additionally, we methodically find unravelings of the system dynamics providing analytical tight bounds for the unmonitored entanglement in the system at all times. We conclude by showing the independence of the method from the choice of entanglement measure.

  16. Ring-opening photochemistry in cyclohexadiene derivatives: Ultrafast dynamics in solution and model membranes

    NASA Astrophysics Data System (ADS)

    Arruda, Brenden C.

    The ultrafast dynamics of molecules in condensed phases is an area of research that has the possibility to inform the design of molecules for functional nano-devices as well as improve on understanding of biological processes. Presented in this thesis are experiments probing the excited and ground state dynamics of molecules based on the 1,3-cyclohexadiene (CHD) chromophore. The reversible photochemistry of these molecules is applicable to the study of photo-switching systems under consideration for molecular memory devices as well as the photobiological synthesis of Vitamin D3. The full reaction mechanism for a number of CHD derivatives is deduced from ultrafast broadband transient absorption spectroscopy and supporting density functional calculations. Steric groups on the cyclohexadiene backbone can affect both the excited state properties as well as the dynamic approach to equilibrium for the hexatriene photoproducts following excitation of CHD. The photoreaction was characterized in multiple solvent environments with a range of viscosity, polarity, hydrogen-bonding capacity, and packing density. The conformational dynamics of the photoproducts depend on the substitution pattern and solvent. The alpha-phellandrene photoproduct relaxes to a fully trans form much like hexatriene, while alpha-terpinene and 7-dehydrocholesterol photoproducts are limited to certain conformations by steric clashes. The solvent affects the relaxation timescales differently for each photoproduct, but all of the dynamics occur within 5 - 10 ps. The ring opening of DHC that occurs in the biological synthesis of Vitamin D3 is also examined in a liposomal model for the cell membrane. In this anisotropic environment, the excited state dynamics are significantly lengthened to ~ 11 -- 50 ps depending on the liposome properties. This suggests significant interaction between DHC and the lipids that affects the ring-opening reaction coordinate. The excited state and photoproduct conformational

  17. Probing the Biexponential Dynamics of Ring-Opening in 7-Dehydrocholesterol.

    PubMed

    Smith, Broc D; Spears, Kenneth G; Sension, Roseanne J

    2016-08-25

    Our prior discovery of a novel biexponential photochemical ring-opening in 7-dehydrocholesterol (DHC) to previtamin D3 [ Tang J. Chem. Phys. 2011 , 134 , 104503 ] is further explored with ultrafast transient absorption spectroscopy, and the results are compared with recently reported high-level theoretical calculations. Three types of experiments are reported. First, variation of the excitation wavelength from 297 to 266 nm leaves the excited state dynamics unaffected. The biexponential decay of the excited state absorption is independent of excitation wavelength with time constants of 0.57 ± 0.06 and 1.88 ± 0.09 ps, in excellent agreement with the results reported earlier (0.56 ± 0.06 and 1.81 ± 0.15 ps) following excitation at 266 nm. Second, variation of the chirp of the excitation pulse influences the relative amplitude of the fast and slow decay components but has no influence on the photoproduct yield. Third, a 545 nm pulse delayed by 0.64 ps with respect to the initial 266 nm pulse was used to perturb the "slow" population and probe the influence of additional electronic or vibrational energy on the reaction process. The results show ultrafast internal conversion Sn → S1 on a ca. 150 fs time scale but no subsequent effect on the reaction dynamics. The experiments reported here are consistent with the recent state averaged complete active space self-consistent field ab initio multiple spawning (SA-CASSCF-AIMS) calculations of Snyder et al. [ J. Phys. Chem. Lett. 2016 , 7 , 2444 ] that assign the biexponential decay to nonequilibrium dynamics related to the opening and closing motion of the cyclohexadiene ring moiety on the excited state surface. These new experiments support the model prediction that the biexponential dynamics does not involve multiple minima and demonstrate the direction for new experimental designs to manipulate the product yields and pathways. PMID:27529502

  18. Generating a dynamic synthetic population--using an age-structured two-sex model for household dynamics.

    PubMed

    Namazi-Rad, M; Namazi-Rad, Mohammad-Reza; Mokhtarian, P; Mokhtarian, Payam; Perez, P; Perez, Pascal

    2014-01-01

    Generating a reliable computer-simulated synthetic population is necessary for knowledge processing and decision-making analysis in agent-based systems in order to measure, interpret and describe each target area and the human activity patterns within it. In this paper, both synthetic reconstruction (SR) and combinatorial optimisation (CO) techniques are discussed for generating a reliable synthetic population for a certain geographic region (in Australia) using aggregated- and disaggregated-level information available for such an area. A CO algorithm using the quadratic function of population estimators is presented in this paper in order to generate a synthetic population while considering a two-fold nested structure for the individuals and households within the target areas. The baseline population in this study is generated from the confidentialised unit record files (CURFs) and 2006 Australian census tables. The dynamics of the created population is then projected over five years using a dynamic micro-simulation model for individual- and household-level demographic transitions. This projection is then compared with the 2011 Australian census. A prediction interval is provided for the population estimates obtained by the bootstrapping method, by which the variability structure of a predictor can be replicated in a bootstrap distribution. PMID:24733522

  19. An evolutionary approach toward dynamic self-generated fuzzy inference systems.

    PubMed

    Zhou, Yi; Er, Meng Joo

    2008-08-01

    An evolutionary approach toward automatic generation of fuzzy inference systems (FISs), termed evolutionary dynamic self-generated fuzzy inference systems (EDSGFISs), is proposed in this paper. The structure and parameters of an FIS are generated through reinforcement learning, whereas an action set for training the consequents of the FIS is evolved via genetic algorithms (GAs). The proposed EDSGFIS algorithm can automatically create, delete, and adjust fuzzy rules according to the performance of the entire system, as well as evaluation of individual fuzzy rules. Simulation studies on a wall-following task by a mobile robot show that the proposed EDSGFIS approach is superior to other related methods. PMID:18632385

  20. Some constraints on dynamical fermion mass generation in simple gauge theories

    NASA Astrophysics Data System (ADS)

    Hellman, William S.; Srikanth, M. L.

    1980-11-01

    Consistency conditions concerning dynamical fermion mass generation in simple gauge theories are examined in lowest order using the procedure of Nambu and Joma-Lasinio. The emerging constraints place strong limitations on the number of fermion multiplets and gauge groups allowed.

  1. Explicit symplectic algorithms based on generating functions for charged particle dynamics.

    PubMed

    Zhang, Ruili; Qin, Hong; Tang, Yifa; Liu, Jian; He, Yang; Xiao, Jianyuan

    2016-07-01

    Dynamics of a charged particle in the canonical coordinates is a Hamiltonian system, and the well-known symplectic algorithm has been regarded as the de facto method for numerical integration of Hamiltonian systems due to its long-term accuracy and fidelity. For long-term simulations with high efficiency, explicit symplectic algorithms are desirable. However, it is generally believed that explicit symplectic algorithms are only available for sum-separable Hamiltonians, and this restriction limits the application of explicit symplectic algorithms to charged particle dynamics. To overcome this difficulty, we combine the familiar sum-split method and a generating function method to construct second- and third-order explicit symplectic algorithms for dynamics of charged particle. The generating function method is designed to generate explicit symplectic algorithms for product-separable Hamiltonian with form of H(x,p)=p_{i}f(x) or H(x,p)=x_{i}g(p). Applied to the simulations of charged particle dynamics, the explicit symplectic algorithms based on generating functions demonstrate superiorities in conservation and efficiency. PMID:27575228

  2. Dynamic shader generation for GPU-based multi-volume ray casting.

    PubMed

    Rössler, Friedemann; Botchen, Ralf P; Ertl, Thomas

    2008-01-01

    Real-time performance for rendering multiple intersecting volumetric objects requires the speed and flexibility of modern GPUs. This requirement has restricted programming of the necessary shaders to GPU experts only. A visualization system that dynamically generates GPU shaders for multi-volume ray casting from a user-definable abstract render graph overcomes this limitation. PMID:18753036

  3. Membrane potential dynamics of axons in cultured hippocampal neurons probed by second-harmonic-generation imaging

    NASA Astrophysics Data System (ADS)

    Nuriya, Mutsuo; Yasui, Masato

    2010-03-01

    The electrical properties of axons critically influence the nature of communication between neurons. However, due to their small size, direct measurement of membrane potential dynamics in intact and complex mammalian axons has been a challenge. Furthermore, quantitative optical measurements of axonal membrane potential dynamics have not been available. To characterize the basic principles of somatic voltage signal propagation in intact axonal arbors, second-harmonic-generation (SHG) imaging is applied to cultured mouse hippocampal neurons. When FM4-64 is applied extracellularly to dissociated neurons, whole axonal arbors are visualized by SHG imaging. Upon action potential generation by somatic current injection, nonattenuating action potentials are recorded in intact axonal arbors. Interestingly, however, both current- and voltage-clamp recordings suggest that nonregenerative subthreshold somatic voltage changes at the soma are poorly conveyed to these axonal sites. These results reveal the nature of membrane potential dynamics of cultured hippocampal neurons, and further show the possibility of SHG imaging in physiological investigations of axons.

  4. Image communication scheme based on dynamic visual cryptography and computer generated holography

    NASA Astrophysics Data System (ADS)

    Palevicius, Paulius; Ragulskis, Minvydas

    2015-01-01

    Computer generated holograms are often exploited to implement optical encryption schemes. This paper proposes the integration of dynamic visual cryptography (an optical technique based on the interplay of visual cryptography and time-averaging geometric moiré) with Gerchberg-Saxton algorithm. A stochastic moiré grating is used to embed the secret into a single cover image. The secret can be visually decoded by a naked eye if only the amplitude of harmonic oscillations corresponds to an accurately preselected value. The proposed visual image encryption scheme is based on computer generated holography, optical time-averaging moiré and principles of dynamic visual cryptography. Dynamic visual cryptography is used both for the initial encryption of the secret image and for the final decryption. Phase data of the encrypted image are computed by using Gerchberg-Saxton algorithm. The optical image is decrypted using the computationally reconstructed field of amplitudes.

  5. Chemical and biological activity in open flows: A dynamical system approach

    NASA Astrophysics Data System (ADS)

    Tél, Tamás; de Moura, Alessandro; Grebogi, Celso; Károlyi, György

    2005-07-01

    Chemical and biological processes often take place in fluid flows. Many of them, like environmental or microfluidical ones, generate filamentary patterns which have a fractal structure, due to the presence of chaos in the underlying advection dynamics. In such cases, hydrodynamical stirring strongly couples to the reactivity of the advected species: the outcome of the reaction is then typically different from that of the same reaction taking place in a well-mixed environment. Here we review recent progress in this field, which became possible due to the application of methods taken from dynamical system theory. We place special emphasis on the derivation of effective rate equations which contain singular terms expressing the fact that the reaction takes place on a moving fractal catalyst, on the unstable foliation of the reaction free advection dynamics.

  6. Emergency Department Visit Forecasting and Dynamic Nursing Staff Allocation Using Machine Learning Techniques With Readily Available Open-Source Software.

    PubMed

    Zlotnik, Alexander; Gallardo-Antolín, Ascensión; Cuchí Alfaro, Miguel; Pérez Pérez, María Carmen; Montero Martínez, Juan Manuel

    2015-08-01

    Although emergency department visit forecasting can be of use for nurse staff planning, previous research has focused on models that lacked sufficient resolution and realistic error metrics for these predictions to be applied in practice. Using data from a 1100-bed specialized care hospital with 553,000 patients assigned to its healthcare area, forecasts with different prediction horizons, from 2 to 24 weeks ahead, with an 8-hour granularity, using support vector regression, M5P, and stratified average time-series models were generated with an open-source software package. As overstaffing and understaffing errors have different implications, error metrics and potential personnel monetary savings were calculated with a custom validation scheme, which simulated subsequent generation of predictions during a 4-year period. Results were then compared with a generalized estimating equation regression. Support vector regression and M5P models were found to be superior to the stratified average model with a 95% confidence interval. Our findings suggest that medium and severe understaffing situations could be reduced in more than an order of magnitude and average yearly savings of up to €683,500 could be achieved if dynamic nursing staff allocation was performed with support vector regression instead of the static staffing levels currently in use. PMID:26200901

  7. Open-Loop Pitch Table Optimization for the Maximum Dynamic Pressure Orion Abort Flight Test

    NASA Technical Reports Server (NTRS)

    Stilwater, Ryan A.

    2009-01-01

    NASA has scheduled the retirement of the space shuttle orbiter fleet at the end of 2010. The Constellation program was created to develop the next generation of human spaceflight vehicles and launch vehicles, known as Orion and Ares respectively. The Orion vehicle is a return to the capsule configuration that was used in the Mercury, Gemini, and Apollo programs. This configuration allows for the inclusion of an abort system that safely removes the capsule from the booster in the event of a failure on launch. The Flight Test Office at NASA's Dryden Flight Research Center has been tasked with the flight testing of the abort system to ensure proper functionality and safety. The abort system will be tested in various scenarios to approximate the conditions encountered during an actual Orion launch. Every abort will have a closed-loop controller with an open-loop backup that will direct the vehicle during the abort. In order to provide the best fit for the desired total angle of attack profile with the open-loop pitch table, the table is tuned using simulated abort trajectories. A pitch table optimization program was created to tune the trajectories in an automated fashion. The program development was divided into three phases. Phase 1 used only the simulated nominal run to tune the open-loop pitch table. Phase 2 used the simulated nominal and three simulated off nominal runs to tune the open-loop pitch table. Phase 3 used the simulated nominal and sixteen simulated off nominal runs to tune the open-loop pitch table. The optimization program allowed for a quicker and more accurate fit to the desired profile as well as allowing for expanded resolution of the pitch table.

  8. A comprehensive photometric study of dynamically evolved small van den Bergh-Hagen open clusters

    NASA Astrophysics Data System (ADS)

    Piatti, Andrés E.

    2016-09-01

    We present results from Johnson UBV, Kron-Cousins RI and Washington CT1T2 photometries for seven van den Bergh-Hagen (vdBH) open clusters, namely, vdBH 1, 10, 31, 72, 87, 92, and 118. The high-quality, multi-band photometric data sets were used to trace the cluster stellar density radial profiles and to build colour-magnitude diagrams (CMDs) and colour-colour (CC) diagrams from which we estimated their structural parameters and fundamental astrophysical properties. The clusters in our sample cover a wide age range, from ˜ 60 Myr up to 2.8 Gyr, are of relatively small size (˜ 1 - 6 pc) and are placed at distances from the Sun which vary between 1.8 and 6.3 kpc, respectively. We also estimated lower limits for the cluster present-day masses as well as half-mass relaxation times (tr). The resulting values in combination with the structural parameter values suggest that the studied clusters are in advanced stages of their internal dynamical evolution (age/tr ˜ 20 - 320), possibly in the typical phase of those tidally filled with mass segregation in their core regions. Compared to open clusters in the solar neighbourhood, the seven vdBH clusters are within more massive (˜ 80 - 380M$⊙$), with higher concentration parameter values (c ˜ 0.75-1.15) and dynamically evolved ones.

  9. Dynamics of capillary-driven liquid-liquid displacement in open microchannels.

    PubMed

    Yang, D; Krasowska, M; Priest, C; Ralston, J

    2014-11-28

    The dynamics of the spontaneous spreading of a liquid droplet along an open hydrophilic microchannel filled with another immiscible liquid is primarily determined by the competition between the capillary driving force and the viscous drag. While the former force depends on the channel cross-section and dimensions, interfacial tension between two liquids and the contact angle formed between the channel's wall and the two liquids, the latter arises from the motion of fluid molecules in the two bulk liquids. This paper focuses on the influence of the outer (displaced) phase viscosity. In general, as the viscosity of the displaced phase increases relative to the viscosity of the displacing phase, the velocity of the liquid-liquid meniscus decreases. The experiments were interpreted by extending a previously established correlation for liquid-vapour systems (J. Phys. Chem. C, 2011, 115(38), 18761-18769) in open microchannels of the same geometry. The relationship between the liquid-liquid flow dynamics and the properties of the liquids (e.g. viscosities) is still unclear. Nonetheless, by taking a self-consistent empirical approach to estimate the influence of the viscosities on the flow kinetics for a given system, it is possible to obtain a reasonable theoretical description for the experimental system over a specific range of viscosity ratios. PMID:25308905

  10. Multi-field open inflation model and multi-field dynamics in tunneling

    SciTech Connect

    Sugimura, Kazuyuki; Yamauchi, Daisuke; Sasaki, Misao E-mail: yamauchi@icrr.u-tokyo.ac.jp

    2012-01-01

    We consider a multi-field open inflation model, in which one of the fields dominates quantum tunneling from a false vacuum while the other field governs slow-roll inflation within the bubble nucleated from false vacuum decay. We call the former the tunneling field and the latter the inflaton field. In the limit of a negligible interaction between the two fields, the false vacuum decay is described by a Coleman-De Luccia instanton. Here we take into account the coupling between the two fields and construct explicitly a multi-field instanton for a simple quartic potential model. We also solve the evolution of the scalar fields within the bubble. We find our model realizes open inflation successfully. This is the first concrete, viable model of open inflation realized with a simple potential. We then study the effect of the multi-field dynamics on the false vacuum decay, specifically on the tunneling rate. We find the tunneling rate increases in general provided that the multi-field effect can be treated perturbatively.

  11. Non-linear hydrotectonic phenomena: Part I - fluid flow in open fractures under dynamical stress loading

    SciTech Connect

    Archambeau, C.B.

    1994-01-01

    A fractured solid under stress loading (or unloading) can be viewed as behaving macroscopically as a medium with internal, hidden, degrees of freedom, wherein changes in fracture geometry (i.e. opening, closing and extension) and flow of fluid and gas within fractures will produce major changes in stresses and strains within the solid. Likewise, the flow process within fractures will be strongly coupled to deformation within the solid through boundary conditions on the fracture surfaces. The effects in the solid can, in part, be phenomenologically represented as inelastic or plastic processes in the macroscopic view. However, there are clearly phenomena associated with fracture growth and open fracture fluid flows that produce effects that can not be described using ordinary inelastic phenomenology. This is evident from the fact that a variety of energy release phenomena can occur, including seismic emissions of previously stored strain energy due to fracture growth, release of disolved gas from fluids in the fractures resulting in enhanced buoyancy and subsequent energetic flows of gas and fluids through the fracture system which can produce raid extension of old fractures and the creation of new ones. Additionally, the flows will be modulated by the opening and closing of fractures due to deformation in the solid, so that the flow process is strongly coupled to dynamical processes in the surrounding solid matrix, some of which are induced by the flow itself.

  12. Charge Generation Dynamics in Efficient All-Polymer Solar Cells: Influence of Polymer Packing and Morphology.

    PubMed

    Gautam, Bhoj R; Lee, Changyeon; Younts, Robert; Lee, Wonho; Danilov, Evgeny; Kim, Bumjoon J; Gundogdu, Kenan

    2015-12-23

    All-polymer solar cells exhibit rapid progress in power conversion efficiency (PCE) from 2 to 7.7% over the past few years. While this improvement is primarily attributed to efficient charge transport and balanced mobility between the carriers, not much is known about the charge generation dynamics in these systems. Here we measured exciton relaxation and charge separation dynamics using ultrafast spectroscopy in polymer/polymer blends with different molecular packing and morphology. These measurements indicate that preferential face-on configuration with intermixed nanomorphology increases the charge generation efficiency. In fact, there is a direct quantitative correlation between the free charge population in the ultrafast time scales and the external quantum efficiency, suggesting not only the transport but also charge generation is key for the design of high performance all polymer solar cells. PMID:26630116

  13. A review of new wire arrays with open and closed magnetic configurations at the 1.6 MA Zebra generator for radiative properties and opacity effects

    NASA Astrophysics Data System (ADS)

    Kantsyrev, V. L.; Safronova, A. S.; Esaulov, A. A.; Williamson, K. M.; Shrestha, I.; Yilmaz, F.; Osborne, G. C.; Weller, M. E.; Ouart, N. D.; Shlyaptseva, V. V.; Rudakov, L. I.; Chuvatin, A. S.; Velikovich, A. L.

    2009-09-01

    The studies emphasize investigation of plasma formation, implosion, and radiation features as a function of two load configurations: compact multi-planar and cylindrical wire arrays. Experiments with different Z-pinch loads were performed on 1.6 MA, 100 ns, Zebra generator at University of Nevada, Reno. The multi-planar wire arrays (PWAs) were studied in open and closed configurations with Al, Cu, brass, Mo and W wires. In the open magnetic configurations (single, double, triple PWAs) magnetic fields are present inside the arrays from the beginning of discharge, while in closed configurations (prism-like PWA) the global magnetic field is excluded inside before plasma flow occurs. The new prism-like PWA allows high flexibility in control of implosion dynamics and precursor formation. The spectral modeling, magneto-hydrodynamic (MHD) and wire ablation dynamic model (WADM) codes were used to describe the plasma evolution and plasma parameters. Experimentally observed electron temperature and density in multiple bright spots reached 1.4 keV and 5 × 10 21 cm -3, respectively. Two types of bright spots were observed. With peak currents up to 1.3 MA opacity effects became more pronounced and led to a limiting of the X-ray yields from compact cylindrical arrays. Despite different magnetic energy to plasma coupling mechanisms early in the implosion a comparison of compact double PWA and cylindrical WA results indicates that during the stagnation stage the same plasma heating mechanism may occur. The double PWA was found to be the best radiator tested at University scale 1 MA generator. It is characterized by a combination of larger yield and power, mm-scale size, and provides the possibility of radiation pulse shaping. Further, the newer configuration, the double PWA with skewed wires, was tested and showed the possibility of a more effective X-ray generation.

  14. Dynamical Processes in Open Quantum Systems from a TDDFT Perspective: Resonances and Electron Photoemission.

    PubMed

    Larsen, Ask Hjorth; De Giovannini, Umberto; Rubio, Angel

    2016-01-01

    We present a review of different computational methods to describe time-dependent phenomena in open quantum systems and their extension to a density-functional framework. We focus the discussion on electron emission processes in atoms and molecules addressing excited-state lifetimes and dissipative processes. Initially we analyze the concept of an electronic resonance, a central concept in spectroscopy associated with a metastable state from which an electron eventually escapes (electronic lifetime). Resonances play a fundamental role in many time-dependent molecular phenomena but can be rationalized from a time-independent context in terms of scattering states. We introduce the method of complex scaling, which is used to capture resonant states as localized states in the spirit of usual bound-state methods, and work on its extension to static and time-dependent density-functional theory. In a time-dependent setting, complex scaling can be used to describe excitations in the continuum as well as wave packet dynamics leading to electron emission. This process can also be treated by using open boundary conditions which allow time-dependent simulations of emission processes without artificial reflections at the boundaries (i.e., borders of the simulation box). We compare in detail different schemes to implement open boundaries, namely transparent boundaries using Green functions, and absorbing boundaries in the form of complex absorbing potentials and mask functions. The last two are regularly used together with time-dependent density-functional theory to describe the electron emission dynamics of atoms and molecules. Finally, we discuss approaches to the calculation of energy and angle-resolved time-dependent pump-probe photoelectron spectroscopy of molecular systems. PMID:25860253

  15. Multiple Model-Informed Open-Loop Control of Uncertain Intracellular Signaling Dynamics

    PubMed Central

    Perley, Jeffrey P.; Mikolajczak, Judith; Harrison, Marietta L.; Buzzard, Gregery T.; Rundell, Ann E.

    2014-01-01

    Computational approaches to tune the activation of intracellular signal transduction pathways both predictably and selectively will enable researchers to explore and interrogate cell biology with unprecedented precision. Techniques to control complex nonlinear systems typically involve the application of control theory to a descriptive mathematical model. For cellular processes, however, measurement assays tend to be too time consuming for real-time feedback control and models offer rough approximations of the biological reality, thus limiting their utility when considered in isolation. We overcome these problems by combining nonlinear model predictive control with a novel adaptive weighting algorithm that blends predictions from multiple models to derive a compromise open-loop control sequence. The proposed strategy uses weight maps to inform the controller of the tendency for models to differ in their ability to accurately reproduce the system dynamics under different experimental perturbations (i.e. control inputs). These maps, which characterize the changing model likelihoods over the admissible control input space, are constructed using preexisting experimental data and used to produce a model-based open-loop control framework. In effect, the proposed method designs a sequence of control inputs that force the signaling dynamics along a predefined temporal response without measurement feedback while mitigating the effects of model uncertainty. We demonstrate this technique on the well-known Erk/MAPK signaling pathway in T cells. In silico assessment demonstrates that this approach successfully reduces target tracking error by 52% or better when compared with single model-based controllers and non-adaptive multiple model-based controllers. In vitro implementation of the proposed approach in Jurkat cells confirms a 63% reduction in tracking error when compared with the best of the single-model controllers. This study provides an experimentally

  16. Multiple model-informed open-loop control of uncertain intracellular signaling dynamics.

    PubMed

    Perley, Jeffrey P; Mikolajczak, Judith; Harrison, Marietta L; Buzzard, Gregery T; Rundell, Ann E

    2014-04-01

    Computational approaches to tune the activation of intracellular signal transduction pathways both predictably and selectively will enable researchers to explore and interrogate cell biology with unprecedented precision. Techniques to control complex nonlinear systems typically involve the application of control theory to a descriptive mathematical model. For cellular processes, however, measurement assays tend to be too time consuming for real-time feedback control and models offer rough approximations of the biological reality, thus limiting their utility when considered in isolation. We overcome these problems by combining nonlinear model predictive control with a novel adaptive weighting algorithm that blends predictions from multiple models to derive a compromise open-loop control sequence. The proposed strategy uses weight maps to inform the controller of the tendency for models to differ in their ability to accurately reproduce the system dynamics under different experimental perturbations (i.e. control inputs). These maps, which characterize the changing model likelihoods over the admissible control input space, are constructed using preexisting experimental data and used to produce a model-based open-loop control framework. In effect, the proposed method designs a sequence of control inputs that force the signaling dynamics along a predefined temporal response without measurement feedback while mitigating the effects of model uncertainty. We demonstrate this technique on the well-known Erk/MAPK signaling pathway in T cells. In silico assessment demonstrates that this approach successfully reduces target tracking error by 52% or better when compared with single model-based controllers and non-adaptive multiple model-based controllers. In vitro implementation of the proposed approach in Jurkat cells confirms a 63% reduction in tracking error when compared with the best of the single-model controllers. This study provides an experimentally

  17. SRG110 Stirling Generator Dynamic Simulator Vibration Test Results and Analysis Correlation

    NASA Technical Reports Server (NTRS)

    Suarez, Vicente J.; Lewandowski, Edward J.; Callahan, John

    2006-01-01

    The U.S. Department of Energy (DOE), Lockheed Martin (LM), and NASA Glenn Research Center (GRC) have been developing the Stirling Radioisotope Generator (SRG110) for use as a power system for space science missions. The launch environment enveloping potential missions results in a random input spectrum that is significantly higher than historical RPS launch levels and is a challenge for designers. Analysis presented in prior work predicted that tailoring the compliance at the generator-spacecraft interface reduced the dynamic response of the system thereby allowing higher launch load input levels and expanding the range of potential generator missions. To confirm analytical predictions, a dynamic simulator representing the generator structure, Stirling convertors and heat sources was designed and built for testing with and without a compliant interface. Finite element analysis was performed to guide the generator simulator and compliant interface design so that test modes and frequencies were representative of the SRG110 generator. This paper presents the dynamic simulator design, the test setup and methodology, test article modes and frequencies and dynamic responses, and post-test analysis results. With the compliant interface, component responses to an input environment exceeding the SRG110 qualification level spectrum were all within design allowables. Post-test analysis included finite element model tuning to match test frequencies and random response analysis using the test input spectrum. Analytical results were in good overall agreement with the test results and confirmed previous predictions that the SRG110 power system may be considered for a broad range of potential missions, including those with demanding launch environments.

  18. SRG110 Stirling Generator Dynamic Simulator Vibration Test Results and Analysis Correlation

    NASA Technical Reports Server (NTRS)

    Lewandowski, Edward J.; Suarez, Vicente J.; Goodnight, Thomas W.; Callahan, John

    2007-01-01

    The U.S. Department of Energy (DOE), Lockheed Martin (LM), and NASA Glenn Research Center (GRC) have been developing the Stirling Radioisotope Generator (SRG110) for use as a power system for space science missions. The launch environment enveloping potential missions results in a random input spectrum that is significantly higher than historical radioisotope power system (RPS) launch levels and is a challenge for designers. Analysis presented in prior work predicted that tailoring the compliance at the generator-spacecraft interface reduced the dynamic response of the system thereby allowing higher launch load input levels and expanding the range of potential generator missions. To confirm analytical predictions, a dynamic simulator representing the generator structure, Stirling convertors and heat sources were designed and built for testing with and without a compliant interface. Finite element analysis was performed to guide the generator simulator and compliant interface design so that test modes and frequencies were representative of the SRG110 generator. This paper presents the dynamic simulator design, the test setup and methodology, test article modes and frequencies and dynamic responses, and post-test analysis results. With the compliant interface, component responses to an input environment exceeding the SRG110 qualification level spectrum were all within design allowables. Post-test analysis included finite element model tuning to match test frequencies and random response analysis using the test input spectrum. Analytical results were in good overall agreement with the test results and confirmed previous predictions that the SRG110 power system may be considered for a broad range of potential missions, including those with demanding launch environments.

  19. A microfluidic platform for generation of sharp gradients in open-access culture

    PubMed Central

    Cate, David M.; Sip, Christopher G.; Folch, Albert

    2010-01-01

    Control of the 3D microenvironment for cultured cells is essential for understanding the complex relationships that biomolecular concentration gradients have on cellular growth, regeneration, and differentiation. This paper reports a microfluidic device for delivering gradients of soluble molecules to cells in an open reservoir without exposing the cells to flow. The cells are cultured on a polyester membrane that shields them from the flow that delivers the gradient. A novel “lid” design is implemented which prevents leakage from around the membrane without requiring sealing agents or adhesives. Once layers are molded, device fabrication can be performed within minutes while at room temperature. Surface gradients were characterized with epifluorescence microscopy; image analysis verified that sharp gradients (∼33 μm wide) can be reproducibly generated. We show that heterogeneous laminar flow patterns of Orange and Green Cell Tracker (CT) applied beneath the membrane can be localized to cells cultured on the other side; concentration profile scans show the extent of CT diffusion parallel to the membrane’s surface to be 10–20 μm. Our device is ideal for conventional cell culture because the cell culture surface is readily accessible to physical manipulation (e.g., micropipette access), the cell culture medium is in direct contact with the incubator atmosphere (i.e., no special protocols for ensuring proper equilibration of gas concentrations are required), and the cells are not subjected to flow-induced shear forces, which are advantageous attributes not commonly found in closed-channel microfluidic designs. PMID:21124751

  20. Analysis of a laboratory experiment on neutron generation by discharges in the open atmosphere

    NASA Astrophysics Data System (ADS)

    Babich, L. P.

    2015-10-01

    A recently reported laboratory experiment with a high-voltage long discharge in the open atmosphere producing neutrons "…up to energies above 10 MeV…" [Agafonov et al., Phys. Rev. Lett. 111, 115003 (2013), 10.1103/PhysRevLett.111.115003] is critically analyzed. Known elementary processes, namely, nuclear synthesis 2H(2H,n )3He and 2H(14N,n )15O , photonuclear, electrodisintegration Anm(e-,n )mprescripts>m n -1 and opposite to the β-decay e-(p+,n ) νe reactions, as well as unconventional mechanisms and the hypothetical increase in the nuclear synthesis cross sections are not capable of accounting for the neutron generation under conditions of the experiment analyzed. In particular, total energy yields of reactions 2H(2H,n )3He and 2H(14N,n )15O are less than the claimed neutron energy above 10 MeV. Trustworthiness of the neutron measurements on the basis of the available study of the C-39 track detectors behavior carried out by Faccini et al. [Eur. Phys. J. C 74, 2894 (2014), 10.1140/epjc/s10052-014-2894-3] in connection with claimed observations of neutron emission in electrolytic cells is discussed. Real-time measurements of x-ray and neutron pulses by Agafonov et al. are commented on using the thorough study of the x-ray emissions by discharges under similar conditions [Kochkin et al., J. Phys. D: Appl. Phys. 45, 425202 (2012), 10.1088/0022-3727/45/42/425202].

  1. Note: Compact, reusable inductive-storage-cum-opening-switch based 1.5 GW single-shot pulsed power generator

    NASA Astrophysics Data System (ADS)

    Shukla, Rohit; Shyam, Anurag

    2014-03-01

    The results of a very-compact (Marx generator-cum-inductor confined into 0.20 m cylindrical diameter and 0.75 m length) and light-weight (<15 kg) pulsed-power generator are being presented in the paper. The load voltage at 10.5 Ω is measured 125 kV (150 ns full width at half maximum FWHM) with 1.5 GW peak-power. The use of single-optimized-exploding-copper-wire along with the use of air for all the switches of the generator (closing switches of Marx generator used as primary energy source and opening switch of exploding wire) make device very attractive. Marx generator shape itself provides the desired inductance for the inductive storage.

  2. Note: Compact, reusable inductive-storage-cum-opening-switch based 1.5 GW single-shot pulsed power generator.

    PubMed

    Shukla, Rohit; Shyam, Anurag

    2014-03-01

    The results of a very-compact (Marx generator-cum-inductor confined into 0.20 m cylindrical diameter and 0.75 m length) and light-weight (<15 kg) pulsed-power generator are being presented in the paper. The load voltage at 10.5 Ω is measured 125 kV (150 ns full width at half maximum FWHM) with 1.5 GW peak-power. The use of single-optimized-exploding-copper-wire along with the use of air for all the switches of the generator (closing switches of Marx generator used as primary energy source and opening switch of exploding wire) make device very attractive. Marx generator shape itself provides the desired inductance for the inductive storage. PMID:24689629

  3. Openings

    PubMed Central

    Selwyn, Peter A.

    2015-01-01

    Reviewing his clinic patient schedule for the day, a physician reflects on the history of a young woman he has been caring for over the past 9 years. What starts out as a routine visit then turns into a unique opening for communication and connection. A chance glimpse out the window of the exam room leads to a deeper meditation on parenthood, survival, and healing, not only for the patient but also for the physician. How many missed opportunities have we all had, without even realizing it, to allow this kind of fleeting but profound opening? PMID:26195687

  4. Openings.

    PubMed

    Selwyn, Peter A

    2015-01-01

    Reviewing his clinic patient schedule for the day, a physician reflects on the history of a young woman he has been caring for over the past 9 years. What starts out as a routine visit then turns into a unique opening for communication and connection. A chance glimpse out the window of the exam room leads to a deeper meditation on parenthood, survival, and healing, not only for the patient but also for the physician. How many missed opportunities have we all had, without even realizing it, to allow this kind of fleeting but profound opening? PMID:26195687

  5. Kaman 40 kW wind turbine generator - control system dynamics

    NASA Technical Reports Server (NTRS)

    Perley, R.

    1981-01-01

    The generator design incorporates an induction generator for application where a utility line is present and a synchronous generator for standalone applications. A combination of feed forward and feedback control is used to achieve synchronous speed prior to connecting the generator to the load, and to control the power level once the generator is connected. The dynamics of the drive train affect several aspects of the system operation. These were analyzed to arrive at the required shaft stiffness. The rotor parameters that affect the stability of the feedback control loop vary considerably over the wind speed range encountered. Therefore, the controller gain was made a function of wind speed in order to maintain consistent operation over the whole wind speed range. The velocity requirement for the pitch control mechanism is related to the nature of the wind gusts to be encountered, the dynamics of the system, and the acceptable power fluctuations and generator dropout rate. A model was developed that allows the probable dropout rate to be determined from a statistical model of wind gusts and the various system parameters, including the acceptable power fluctuation.

  6. The Dynamics of the Aspirations and Demands of Different Generations of Russia's Young People

    ERIC Educational Resources Information Center

    Khotkina, Z. A.

    2013-01-01

    Survey data comparing the life aspirations of three generations of Russians show an increase from the level of the Soviet generation of young people to the perestroika generation, followed by a decline in the generation of young people who were born and grew up in today's "market" Russia. One chief cause of the downward dynamic of…

  7. HAPCAD: An open-source tool to detect PCR crossovers in next-generation sequencing generated HLA data.

    PubMed

    McDevitt, Shana L; Bredeson, Jessen V; Roy, Scott W; Lane, Julie A; Noble, Janelle A

    2016-03-01

    Next-generation sequencing (NGS) based HLA genotyping can generate PCR artifacts corresponding to IMGT/HLA Database alleles, for which multiple examples have been observed, including sequence corresponding to the HLA-DRB1(∗)03:42 allele. Repeat genotyping of 131 samples, previously genotyped as DRB1(∗)03:01 homozygotes using probe-based methods, resulted in the heterozygous call DRB1(∗)03:01+DRB1(∗)03:42. The apparent rare DRB1(∗)03:42 allele is hypothesized to be a "hybrid amplicon" generated by PCR crossover, a process in which a partial PCR product denatures from its template, anneals to a different allele template, and extends to completion. Unlike most PCR crossover products, "hybrid amplicons" always corresponds to an IMGT/HLA Database allele, necessitating a case-by-case analysis of whether its occurrence reflects the actual allele or is simply the result of PCR crossover. The Hybrid Amplicon/PCR Crossover Artifact Detector (HAPCAD) program mimics jumping PCR in silico and flags allele sequences that may also be generated as hybrid amplicon. PMID:26802209

  8. Extended-Term Dynamic Simulations with High Penetrations of Photovoltaic Generation.

    SciTech Connect

    Concepcion, Ricky James; Elliott, Ryan Thomas; Donnelly, Matt; Sanchez-Gasca, Juan

    2016-01-01

    The uncontrolled intermittent availability of renewable energy sources makes integration of such devices into today's grid a challenge. Thus, it is imperative that dynamic simulation tools used to analyze power system performance are able to support systems with high amounts of photovoltaic (PV) generation. Additionally, simulation durations expanding beyond minutes into hours must be supported. This report aims to identify the path forward for dynamic simulation tools to accom- modate these needs by characterizing the properties of power systems (with high PV penetration), analyzing how these properties affect dynamic simulation software, and offering solutions for po- tential problems. We present a study of fixed time step, explicit numerical integration schemes that may be more suitable for these goals, based on identified requirements for simulating high PV penetration systems. We also present the alternative of variable time step integration. To help determine the characteristics of systems with high PV generation, we performed small signal sta- bility studies and time domain simulations of two representative systems. Along with feedback from stakeholders and vendors, we identify the current gaps in power system modeling including fast and slow dynamics and propose a new simulation framework to improve our ability to model and simulate longer-term dynamics.

  9. An Open-Source Galaxy Redshift Survey Simulator for next-generation Large Scale Structure Surveys

    NASA Astrophysics Data System (ADS)

    Seijak, Uros

    Galaxy redshift surveys produce three-dimensional maps of the galaxy distribution. On large scales these maps trace the underlying matter fluctuations in a relatively simple manner, so that the properties of the primordial fluctuations along with the overall expansion history and growth of perturbations can be extracted. The BAO standard ruler method to measure the expansion history of the universe using galaxy redshift surveys is thought to be robust to observational artifacts and understood theoretically with high precision. These same surveys can offer a host of additional information, including a measurement of the growth rate of large scale structure through redshift space distortions, the possibility of measuring the sum of neutrino masses, tighter constraints on the expansion history through the Alcock-Paczynski effect, and constraints on the scale-dependence and non-Gaussianity of the primordial fluctuations. Extracting this broadband clustering information hinges on both our ability to minimize and subtract observational systematics to the observed galaxy power spectrum, and our ability to model the broadband behavior of the observed galaxy power spectrum with exquisite precision. Rapid development on both fronts is required to capitalize on WFIRST's data set. We propose to develop an open-source computational toolbox that will propel development in both areas by connecting large scale structure modeling and instrument and survey modeling with the statistical inference process. We will use the proposed simulator to both tailor perturbation theory and fully non-linear models of the broadband clustering of WFIRST galaxies and discover novel observables in the non-linear regime that are robust to observational systematics and able to distinguish between a wide range of spatial and dynamic biasing models for the WFIRST galaxy redshift survey sources. We have demonstrated the utility of this approach in a pilot study of the SDSS-III BOSS galaxies, in which we

  10. Transformation properties of dynamic χ(2) holograms generating at the difference frequency

    NASA Astrophysics Data System (ADS)

    Miloglyadov, E. V.; Stasel'ko, D. I.

    2016-07-01

    The transformation properties of dynamic χ(2) holograms generating at the difference frequency are analyzed as applied to the position and scales of reconstructed images. Some regularities are established for the spatial localization and scales of images for different combinations of frequencies and positions of the reference and object point sources, involved in the formation of a holographic image. The formation of amplitude transparency images, reconstructed by dynamic χ(2) holograms with a decrease or conservation of the object beam frequency, and their transformations are experimentally demonstrated.

  11. Beam dynamics of a new low emittance third generation synchrotron light source facility

    NASA Astrophysics Data System (ADS)

    Ghasem, H.; Ahmadi, E.; Saeidi, F.; Sarhadi, K.

    2015-03-01

    The Iranian Light Source Facility (ILSF) is a new 3 GeV third generation synchrotron light source facility which is in the design stage. As the main radiation source, design of the ILSF storage ring emphasizes an ultralow electron beam emittance, great brightness, stability and reliability. The storage ring is based on a five-bend achromat lattice providing an ultralow horizontal beam emittance of 0.48 nm rad. In this paper, we present the design feature of the ILSF storage ring, give the linear and nonlinear dynamic properties of the lattice and discuss the related beam dynamic specifications.

  12. Dynamic consequences of electromagnetic pull due to deviations in generator shape

    NASA Astrophysics Data System (ADS)

    Lundström, Niklas L. P.; Aidanpää, Jan-Olov

    2007-03-01

    Results from earlier measurements on hydropower generators have indicated relatively large eccentricities and shape deviations in the rotor and stator. These non-symmetric geometries produce an attraction force between the rotor and the stator, called unbalanced magnetic pull (UMP). The UMP force can produce large vibrations which can be dangerous to the machine. A mathematical model is developed to describe the shapes of the rotor and stator, and the corresponding UMP is obtained through the law of energy conservation. The target of the paper is to analyse the dynamics of a generator due to shape deviations in the rotor and stator. As rotor-model, a balanced Jeffcott rotor is used. A linearization of the UMP indicates the importance of considering the nonlinear effects. The stability of some attractors are analysed and the generator dynamics are further investigated by simulating the basin of attraction. The magnitudes are approximately obtained when the shape deviations become dangerous for the generator. It is concluded which shape deviations that are more dangerous than others. In hydropower generator maintenance the shapes of the rotor and stator are frequently measured. The results from this paper can be used to evaluate such measurements and estimate the stability and robustness by simulations.

  13. Brief communication "Modeling tornado dynamics and the generation of infrasound, electric and magnetic fields"

    NASA Astrophysics Data System (ADS)

    Schmitter, E. D.

    2010-02-01

    Recent observations endorse earlier measurements of time varying electric and magnetic fields generated by tornadoes and dust devils. These signals may provide a means for early warning but together with a proper modeling approach can also provide insight into geometry and dynamics of the vortices. Our model calculations show the existence of pressure resonances characterized as acoustic duct modes with well defined frequencies. These resonances not only generate infrasound but also modulate the charge density and the velocity field and in this way lead to electric and magnetic field oscillations in the 0.5-20-Hz range that can be monitored from a distance of several kilometers.

  14. Investigation of rocket-powered, open-cycle, magnetohydrodynamic generators for high, pulsed power needs in space. Master's thesis

    SciTech Connect

    Power, J.W.

    1986-11-01

    This investigation examined the possibility of using a rocket-powered magnetohydrodynamic generator for pulse power in space of 300 megawatts (MW). The result is a preliminary design of an MHD generator using an open cycle disk channel and a single superconducting solenoid coil. The disk channel acts as a thrust deflector, and internal vanes counteract induced vorticity. The use of a solid-fuel-wafer grain design rocket motor is proposed for increased electrical conductivity and pulse operation of the generator. Using conservative parameters, a generator design capable of being carried on one or two space-shuttle launches is developed with estimated mass of 24,450 kg and estimated power output of 1346 MW. The nominal operation time before refurbishment is 115 seconds; the restriction operation time is deterioration of the channel throat. This design exceeds present nuclear and solar-cell power systems in power output per unit mass.

  15. Experimental study of stable imbibition displacements in a model open fracture. I. Local avalanche dynamics.

    PubMed

    Clotet, Xavier; Ortín, Jordi; Santucci, Stéphane

    2016-01-01

    We report the results of an experimental investigation of the spatiotemporal dynamics of stable imbibition fronts in a disordered medium, in the regime of capillary disorder, for a wide range of experimental conditions. We have used silicone oils of various viscosities μ and nearly identical oil-air surface tension and forced them to slowly invade a model open fracture at different constant flow rates v. In this first part of the study we have focused on the local dynamics at a scale below the size of the quenched disorder. Changing μ and v independently, we have found that the dynamics is not simply controlled by the capillary number Ca∼μv. Specifically, we have found that the wide statistical distributions of local front velocities, and their large spatial correlations along the front, are indeed controlled by the capillary number Ca. However, local velocities exhibit also very large temporal correlations, and these correlations depend more strongly on the mean imposed velocity v than on the viscosity μ of the invading fluid. Correlations between local velocities lead to a burstlike dynamics. Avalanches, defined as clusters of large local velocities, follow power-law distributions-both in size and duration-with exponential cutoffs that diverge as Ca→0, the pinning-depinning transition of stable imbibition displacements. Large data sets have led to reliable statistics, from which we have derived accurate values of critical exponents of the relevant power-law distributions. We have investigated also the dependence of their cutoffs on μ and v and related them to the autocorrelations of local velocities in space and time. PMID:26871064

  16. Experimental study of stable imbibition displacements in a model open fracture. I. Local avalanche dynamics

    NASA Astrophysics Data System (ADS)

    Clotet, Xavier; Ortín, Jordi; Santucci, Stéphane

    2016-01-01

    We report the results of an experimental investigation of the spatiotemporal dynamics of stable imbibition fronts in a disordered medium, in the regime of capillary disorder, for a wide range of experimental conditions. We have used silicone oils of various viscosities μ and nearly identical oil-air surface tension and forced them to slowly invade a model open fracture at different constant flow rates v . In this first part of the study we have focused on the local dynamics at a scale below the size of the quenched disorder. Changing μ and v independently, we have found that the dynamics is not simply controlled by the capillary number Ca˜μ v . Specifically, we have found that the wide statistical distributions of local front velocities, and their large spatial correlations along the front, are indeed controlled by the capillary number Ca. However, local velocities exhibit also very large temporal correlations, and these correlations depend more strongly on the mean imposed velocity v than on the viscosity μ of the invading fluid. Correlations between local velocities lead to a burstlike dynamics. Avalanches, defined as clusters of large local velocities, follow power-law distributions—both in size and duration—with exponential cutoffs that diverge as Ca→0 , the pinning-depinning transition of stable imbibition displacements. Large data sets have led to reliable statistics, from which we have derived accurate values of critical exponents of the relevant power-law distributions. We have investigated also the dependence of their cutoffs on μ and v and related them to the autocorrelations of local velocities in space and time.

  17. Open-system dynamics of entanglement:a key issues review

    NASA Astrophysics Data System (ADS)

    Aolita, Leandro; de Melo, Fernando; Davidovich, Luiz

    2015-04-01

    One of the greatest challenges in the fields of quantum information processing and quantum technologies is the detailed coherent control over each and every constituent of quantum systems with an ever increasing number of particles. Within this endeavor, harnessing of many-body entanglement against the detrimental effects of the environment is a major pressing issue. Besides being an important concept from a fundamental standpoint, entanglement has been recognized as a crucial resource for quantum speed-ups or performance enhancements over classical methods. Understanding and controlling many-body entanglement in open systems may have strong implications in quantum computing, quantum simulations of many-body systems, secure quantum communication or cryptography, quantum metrology, our understanding of the quantum-to-classical transition, and other important questions of quantum foundations. In this paper we present an overview of recent theoretical and experimental efforts to underpin the dynamics of entanglement under the influence of noise. Entanglement is thus taken as a dynamic quantity on its own, and we survey how it evolves due to the unavoidable interaction of the entangled system with its surroundings. We analyze several scenarios, corresponding to different families of states and environments, which render a very rich diversity of dynamical behaviors. In contrast to single-particle quantities, like populations and coherences, which typically vanish only asymptotically in time, entanglement may disappear at a finite time. In addition, important classes of entanglement display an exponential decay with the number of particles when subject to local noise, which poses yet another threat to the already-challenging scaling of quantum technologies. Other classes, however, turn out to be extremely robust against local noise. Theoretical results and recent experiments regarding the difference between local and global decoherence are summarized. Control and

  18. Dynamics and control of Stirling engines in a 15 kWe solar electric generation concept

    NASA Technical Reports Server (NTRS)

    Das, R. L.; Bahrami, K. A.

    1979-01-01

    This paper discusses the application of kinematic and free piston Stirling engines in a 15 kWe dish-electric approach for solar thermal electric generation. Initially, the principle of operation of Stirling engines in solar thermal electric generation is discussed. Then, under certain simplifying assumptions, mathematical models describing the dynamic operation of the kinematic and free piston Stirling engines are developed. It is found that the engine dynamics may be approximated by second order models. Control mechanisms for both types of Stirling engines are discussed. An approach based on the modulation of the working fluid mean pressure is presented. It is concluded that this approach offers a fast and effective means of control. The free piston Stirling engine, being a thermally driven mechanical oscillator, presents unique control requirements. These are discussed in this paper.

  19. Multistable particle-field dynamics in cavity-generated optical lattices

    NASA Astrophysics Data System (ADS)

    Winterauer, Dominik J.; Niedenzu, Wolfgang; Ritsch, Helmut

    2015-05-01

    Polarizable particles trapped in a resonator-sustained optical-lattice potential generate strong position-dependent backaction on the intracavity field. In the quantum regime, particles in different energy bands are connected to different intracavity light intensities and optical-lattice depths. This generates a highly nonlinear coupled particle-field dynamics. For a given pump strength and detuning, a factorizing mean-field approach predicts several self-consistent stationary solutions of strongly distinct photon numbers and motional states. Quantum Monte Carlo wave-function simulations of the master equation confirm these predictions and reveal complex multimodal photon-number and particle-momentum distributions. Using larger nanoparticles in such a setup thus constitutes a well-controllable playground to study nonlinear quantum dynamics and the buildup of macroscopic quantum superpositions at the quantum-classical boundary.

  20. Self-organizing Symbol Acquisition and Motion Generation based on Dynamics-based Information Processing System

    NASA Astrophysics Data System (ADS)

    Okada, Masafumi; Nakamura, Daisuke; Nakamura, Yoshihiko

    The symbol acquisition and manipulation abilities are one of the inherent characteristics of human beings comparing with other creatures. In this paper, based on recurrent self-organizing map and dynamics-based information processing system, we propose a dynamics based self-organizing map (DBSOM). This method enables designing a topological map using time sequence data, which causes recognition and generation of the robot motion. Using this method, we design the self-organizing symbol acquisition system and robot motion generation system for a humanoid robot. By implementing DBSOM to the robot in the real world, we realize the symbol acquisition from the experimental data and investigate the spatial property of the obtained DBSOM.

  1. Dynamic angle stability of an industrial turbo generator connected in power system

    NASA Astrophysics Data System (ADS)

    Grouni, S.; Hallak, M.; Aibeche, A.; Ramdani, A.; Bouallegue, K.

    2014-12-01

    This paper deals with the dynamic problem of oscillation and damping on an industrial turbo generator connected to infinite networks. A set of equations that governs the turbo generator connected to infinite bus are written in characteristic form. The power system stabilizer PSS applied in order to solve the problem of damping internal angle and operating power system synchronization. The PSS model described is inspired from Heffron-Philips model is applied on real parameters simulation under Matlab simulink. The results obtained from practical application are advantageous which variations of amplitude and time mitigation oscillations magnitude of electrical and mechanical output variables. This numerical experiment permits to gain more simplicity compared with several methods applied in a real operating prototyping systems. The PSS that is used will improve the dynamic stability.

  2. Dynamical mass generation in unquenched QED using the Dyson-Schwinger equations

    SciTech Connect

    Kızılersü, Ayse; Sizer, Tom; Pennington, Michael R.; Williams, Anthony G.; Williams, Richard

    2015-03-13

    We present a comprehensive numerical study of dynamical mass generation for unquenched QED in four dimensions, in the absence of four-fermion interactions, using the Dyson-Schwinger approach. We begin with an overview of previous investigations of criticality in the quenched approximation. To this we add an analysis using a new fermion-antifermion-boson interaction ansatz, the Kizilersu-Pennington (KP) vertex, developed for an unquenched treatment. After surveying criticality in previous unquenched studies, we investigate the performance of the KP vertex in dynamical mass generation using a renormalized fully unquenched system of equations. This we compare with the results for two hybrid vertices incorporating the Curtis-Pennington vertex in the fermion equation. We conclude that the KP vertex is as yet incomplete, and its relative gauge-variance is due to its lack of massive transverse components in its design.

  3. Dynamical mass generation in unquenched QED using the Dyson-Schwinger equations

    DOE PAGESBeta

    Kızılersü, Ayse; Sizer, Tom; Pennington, Michael R.; Williams, Anthony G.; Williams, Richard

    2015-03-13

    We present a comprehensive numerical study of dynamical mass generation for unquenched QED in four dimensions, in the absence of four-fermion interactions, using the Dyson-Schwinger approach. We begin with an overview of previous investigations of criticality in the quenched approximation. To this we add an analysis using a new fermion-antifermion-boson interaction ansatz, the Kizilersu-Pennington (KP) vertex, developed for an unquenched treatment. After surveying criticality in previous unquenched studies, we investigate the performance of the KP vertex in dynamical mass generation using a renormalized fully unquenched system of equations. This we compare with the results for two hybrid vertices incorporating themore » Curtis-Pennington vertex in the fermion equation. We conclude that the KP vertex is as yet incomplete, and its relative gauge-variance is due to its lack of massive transverse components in its design.« less

  4. Structure and Dynamics of Reentrant Nematics: Any Open Questions after Almost 40 Years?

    PubMed Central

    Mazza, Marco G.; Schoen, Martin

    2011-01-01

    Liquid crystals have attracted enormous interest because of the variety of their phases and richness of their application. The interplay of general physical symmetries and specific molecular features generates a myriad of different phenomena. A surprising behavior of liquid crystals is the reentrancy of phases as temperature, pressure, or concentration are varied. Here, we review the main experimental facts and the different theoretical scenarios that have guided the understanding of bulk reentrant nematics. Recently, some computer simulations of a system confined to nanoscopic scales have found new dynamical features of the reentrant nematic phase. We discuss this prediction in relation with the available experimental evidence on reentrant nematics and with the dynamics of liquids in strongly confined environments. PMID:21954364

  5. TDDFT-MD Study on Dynamics in Photoinduced Ring Opening of Benzene

    NASA Astrophysics Data System (ADS)

    Tateyama, Yoshitaka; Miyamoto, Yoshiyuki; Oyama, Norihisa; Ohno, Takahisa

    2004-03-01

    Coupled dynamics of ions and electrons in the excited states of molecular and solid benzene is investigated on the femtosecond scale by the efficient simulation scheme recently developed for the time-dependent density functional theory. Within the π arrow π excitations, any out-of-plane motion of ions is not induced in the molecular system basically. In the solid, however, we found that large swing of the C-H bonds and subsequent twist of the carbon ring takes place, leading to sp^3-like bonding of carbon ions. This swing-to-twist motion presents a plausible mechanism underlying the photoinduced ring opening in solid benzene experimentally observed under pressure. This research is partially supported by ACT-JST, and also by FSIS and Special Coordination Funds of Ministry of Education, Culture, Sports, Science and Technology of Japanese Government.

  6. Open and closed shear-walls in high-rise structural systems: Static and dynamic analysis

    NASA Astrophysics Data System (ADS)

    Carpinteri, Alberto; Lacidogna, Giuseppe; Nitti, Giuseppe

    2016-06-01

    In the present paper, a General Algorithm is applied to the analysis of high-rise structures. This algorithm is to be used as a calculation tool in preliminary design; it allows to define the interaction between closed and open, straight or curved shear-walls, and the forces exchanged in structures subject to mainly horizontal loads. The analysis can be performed in both static and dynamic regimes, the mode shapes and the natural frequencies being assessed. This general formulation allows analyses of high-rise structures by taking into account the torsional rigidity and the warping deformations of the elements composing the building without gross simplifications. In thisway it is possible to model the structure as a single equivalent cantilever, thus minimising the degrees of freedom of the system, and consequently the calculation time. Finally, potentials of the method proposed are demonstrated by a numerical example which emphasizes the link between global displacements and stresses in the elements composing the structure.

  7. Parallelizing a molecular dynamics algorithm on a multiprocessor workstation using OpenMP.

    PubMed

    Tarmyshov, Konstantin B; Müller-Plathe, Florian

    2005-01-01

    The atomistic molecular dynamics program YASP has been parallelized for shared-memory computer architectures. Parallelization was restricted to the most CPU-time-consuming parts: neighbor-list construction, calculation of nonbonded, angle and dihedral forces, and constraints. Most of the sequential FORTRAN code was kept; parallel constructs were inserted as compiler directives using the OpenMP standard. Only in the case of the neighbor list did the data structure have to be changed. The parallel code achieves a useful speedup over the sequential version for systems of several thousand atoms and above. On an IBM Regatta p690+, the throughput increases with the number of processors up to a maximum of 12-16 processors depending on the characteristics of the simulated systems. On dual-processor Xeon systems, the speedup is about 1.7. PMID:16309301

  8. Dynamic Analysis of Hybrid Energy Systems under Flexible Operation and Variable Renewable Generation -- Part I: Dynamic Performance Analysis and Part II: Dynamic Cost

    SciTech Connect

    Humberto E. Garcia; Amit Mohanty; Wen-Chiao Lin; Robert S. Cherry

    2013-04-01

    Dynamic analysis of hybrid energy systems (HES) under flexible operation and variable renewable generation is considered in order to better understand various challenges and opportunities associated with the high system variability arising from the integration of renewable energy into the power grid. Unique consequences are addressed by devising advanced HES solutions in which multiple forms of energy commodities, such as electricity and chemical products, may be exchanged. Dynamic models of various unit operations are developed and integrated within two different HES options. One HES option, termed traditional, produces electricity only and consists of a primary heat generator (PHG) (e.g., a small modular reactor), a steam turbine generator, a wind farm, and a battery storage. The other HES option, termed advanced, includes not only the components present in the traditional option but also a chemical plant complex to repurpose excess energy for non-electricity services, such as for the production of chemical goods (e.g., transportation fuel). In either case, a given HES is connected to the power grid at a point of common coupling and requested to deliver a certain electricity generation profile as dictated by a regional power grid operator based on a predicted demand curve. Dynamic analysis of these highly-coupled HES are performed to identify their key dynamical properties and limitations and to prescribe solutions for best managing and mitigating the high variability introduced from incorporating renewable energy into the energy mix. A comparative dynamic cost analysis is also conducted to determine best HES options. The cost function includes a set of metrics for computing fixed costs, such as fixed operations and maintenance (O&M) and overnight capital costs, and also variable operational costs, such as cost of variability, variable O&M cost, and cost of environmental impact, together with revenues. Assuming different options for implementing PHG (e

  9. Dynamical gap generation in graphene nanoribbons: An effective relativistic field theoretical model

    SciTech Connect

    Chaves, A. J.; Paula, W. de; Frederico, T.; Lima, G. D.; Cordeiro, C. E.; Delfino, A.

    2011-04-15

    We show that the assumption of a nontrivial zero band gap for a graphene sheet within an effective relativistic field theoretical model description of interacting Dirac electrons on the surface of graphene describes the experimental band gap of graphene nanoribbons for a wide range of widths. The graphene band gap is dynamically generated, corresponding to a nontrivial gapless solution, found in the limit of an infinitely wide graphene ribbon. The nanoribbon band gap is determined by the experimental graphene work function.

  10. Dynamical Generation of Floquet Majorana Flat Bands in s-Wave Superconductors

    NASA Astrophysics Data System (ADS)

    Poudel, Amrit; Ortiz, Gerardo; Viola, Lorenza

    2015-03-01

    We present techniques to dynamically engineer flat bands of symmetry-protected Majorana edge modes in s-wave superconductors. Specifically, we show how time-dependent periodic control may be employed for designing time-independent effective Hamiltonians, which support Floquet Majorana flat bands, starting from topologically trivial equilibrium conditions. In the first approach, a suitably chosen modulation of the chemical potential simultaneously induces Majorana flat bands and dynamically ``activates'' a pre-existing chiral symmetry which is responsible for their protection. In the second approach, a desired chiral symmetry is dynamically generated by suppressing a chirality-breaking term in the static Hamiltonian. In the process, we also show how a non-equilibrium topological state of matter may be reached, that has no known equilibrium counterpart.

  11. Dynamics of a pulsed laser generated tin plasma expanding in an oxygen atmosphere

    NASA Astrophysics Data System (ADS)

    Barreca, F.; Fazio, E.; Neri, F.; Barletta, E.; Trusso, S.; Fazio, B.

    2005-10-01

    Semiconducting tin oxide can be successfully deposited by means of the laser ablation technique. In particular by ablating metallic tin in a controlled oxygen atmosphere, thin films of SnOx have been deposited. The partial oxygen pressure at which the films are deposited strongly influences both the stoichiometry and the structural properties of the films. In this work, we present a study of the expansion dynamics of the plasma generated by ablating a tin target by means of a pulsed laser using time and space resolved optical emission spectroscopy and fast photography imaging of the expanding plasma. Both Sn I and Sn II optical emission lines have been observed from the time-integrated spectroscopy. Time resolved-measurements revealed the dynamics of the expanding plasma in the ambient oxygen atmosphere. Stoichiometry of the films has been determined by means of X-ray photoelectron spectroscopy and correlated to the expansion dynamics of the plasma.

  12. Functional second harmonic generation microscopy probes molecular dynamics with high temporal resolution

    PubMed Central

    Förderer, Moritz; Georgiev, Tihomir; Mosqueira, Matias; Fink, Rainer H. A.; Vogel, Martin

    2016-01-01

    Second harmonic generation (SHG) microscopy is a powerful tool for label free ex vivo or in vivo imaging, widely used to investigate structure and organization of endogenous SHG emitting proteins such as myosin or collagen. Polarization resolved SHG microscopy renders supplementary information and is used to probe different molecular states. This development towards functional SHG microscopy is calling for new methods for high speed functional imaging of dynamic processes. In this work we present two approaches with linear polarized light and demonstrate high speed line scan measurements of the molecular dynamics of the motor protein myosin with a time resolution of 1 ms in mammalian muscle cells. Such a high speed functional SHG microscopy has high potential to deliver new insights into structural and temporal molecular dynamics under ex vivo or in vivo conditions. PMID:26977360

  13. Functional second harmonic generation microscopy probes molecular dynamics with high temporal resolution.

    PubMed

    Förderer, Moritz; Georgiev, Tihomir; Mosqueira, Matias; Fink, Rainer H A; Vogel, Martin

    2016-02-01

    Second harmonic generation (SHG) microscopy is a powerful tool for label free ex vivo or in vivo imaging, widely used to investigate structure and organization of endogenous SHG emitting proteins such as myosin or collagen. Polarization resolved SHG microscopy renders supplementary information and is used to probe different molecular states. This development towards functional SHG microscopy is calling for new methods for high speed functional imaging of dynamic processes. In this work we present two approaches with linear polarized light and demonstrate high speed line scan measurements of the molecular dynamics of the motor protein myosin with a time resolution of 1 ms in mammalian muscle cells. Such a high speed functional SHG microscopy has high potential to deliver new insights into structural and temporal molecular dynamics under ex vivo or in vivo conditions. PMID:26977360

  14. Post-scram Liquid Metal cooled Fast Breeder Reactor (LMFBR) heat transport system dynamics and steam generator control: Figures

    NASA Astrophysics Data System (ADS)

    Brukx, J. F. L. M.

    1982-06-01

    Dynamic modeling of LMFBR heat transport system is discussed. Uncontrolled transient behavior of individual components and of the integrated heat transport system are considered. For each component, results showing specific dynamic features of the component and/or model capability were generated. Controlled dynamic behavior for alternative steam generator control systems during forced and natural sodium coolant circulation was analyzed. Combined free and forced convection of laminar and turbulent vertical pipe flow of liquid metals was investigated.

  15. Phytoplankton community dynamics in an intermittently open hypereutrophic coastal lagoon in southern Portugal

    NASA Astrophysics Data System (ADS)

    Coelho, Susana; Pérez-Ruzafa, Angel; Gamito, Sofia

    2015-12-01

    Phytoplankton community' dynamics were studied in Salgados coastal lagoon in order to evaluate the effects of excessive organic loads and also physical stress caused by the irregular opening of the lagoon. Salgados is a hypereutrophic intermittently open coastal lagoon, which received freshwater inputs from small rivers and from a wastewater treatment plant. Cyanophyceae dominated the phytoplankton communities most of the time; Bacillariophyceae became the main taxonomic group in winter when the lagoon was closed; Chlorophyceae was the major class in early summer; pico-nano flagellate algae accounted for a high percentage of total phytoplankton during spring. Potentially harmful taxa were observed during most of the sampling periods, forming blooms and accounting for a considerable percentage of total phytoplankton abundance. A strong differentiation among dry and wet seasons could be noticed. The dry season was dominated by Microsystis aeruginosa, Rhodomonas sp., pico-nano flagellate algae, Cyclotella spp. and Planktothrix sp., while the wet season, although still with the presence of Microsystis aeruginosa, was dominated by Dolichospermum spiroides. The best environmental variables explaining stations patterns and based on phytoplankton taxa were days of isolation, pH, and salinity. Temperature, cumulative rain and total phosphorus were also related with species and stations patterns. The high nutrient load in Salgados lagoon promoted the development and persistence of harmful algae blooms. Proper management of coastal lagoons involves not only the control of direct discharges of nutrients, but also of other factors, including water level and communication with the sea.

  16. Dynamics of the near response under natural viewing conditions with an open-view sensor

    PubMed Central

    Chirre, Emmanuel; Prieto, Pedro; Artal, Pablo

    2015-01-01

    We have studied the temporal dynamics of the near response (accommodation, convergence and pupil constriction) in healthy subjects when accommodation was performed under natural binocular and monocular viewing conditions. A binocular open-view multi-sensor based on an invisible infrared Hartmann-Shack sensor was used for non-invasive measurements of both eyes simultaneously in real time at 25Hz. Response times for each process under different conditions were measured. The accommodative responses for binocular vision were faster than for monocular conditions. When one eye was blocked, accommodation and convergence were triggered simultaneously and synchronized, despite the fact that no retinal disparity was available. We found that upon the onset of the near target, the unblocked eye rapidly changes its line of sight to fix it on the stimulus while the blocked eye moves in the same direction, producing the equivalent to a saccade, but then converges to the (blocked) target in synchrony with accommodation. This open-view instrument could be further used for additional experiments with other tasks and conditions. PMID:26504666

  17. Transcription closed and open complex dynamics studies reveal balance between genetic determinants and co-factors

    NASA Astrophysics Data System (ADS)

    Sala, Adrien; Shoaib, Muhammad; Anufrieva, Olga; Mutharasu, Gnanavel; Jahan Hoque, Rawnak; Yli-Harja, Olli; Kandhavelu, Meenakshisundaram

    2015-05-01

    In E. coli, promoter closed and open complexes are key steps in transcription initiation, where magnesium-dependent RNA polymerase catalyzes RNA synthesis. However, the exact mechanism of initiation remains to be fully elucidated. Here, using single mRNA detection and dual reporter studies, we show that increased intracellular magnesium concentration affects Plac initiation complex formation resulting in a highly dynamic process over the cell growth phases. Mg2+ regulates transcription transition, which modulates bimodality of mRNA distribution in the exponential phase. We reveal that Mg2+ regulates the size and frequency of the mRNA burst by changing the open complex duration. Moreover, increasing magnesium concentration leads to higher intrinsic and extrinsic noise in the exponential phase. RNAP-Mg2+ interaction simulation reveals critical movements creating a shorter contact distance between aspartic acid residues and Nucleotide Triphosphate residues and increasing electrostatic charges in the active site. Our findings provide unique biophysical insights into the balanced mechanism of genetic determinants and magnesium ion in transcription initiation regulation during cell growth.

  18. Dynamics of the near response under natural viewing conditions with an open-view sensor.

    PubMed

    Chirre, Emmanuel; Prieto, Pedro; Artal, Pablo

    2015-10-01

    We have studied the temporal dynamics of the near response (accommodation, convergence and pupil constriction) in healthy subjects when accommodation was performed under natural binocular and monocular viewing conditions. A binocular open-view multi-sensor based on an invisible infrared Hartmann-Shack sensor was used for non-invasive measurements of both eyes simultaneously in real time at 25Hz. Response times for each process under different conditions were measured. The accommodative responses for binocular vision were faster than for monocular conditions. When one eye was blocked, accommodation and convergence were triggered simultaneously and synchronized, despite the fact that no retinal disparity was available. We found that upon the onset of the near target, the unblocked eye rapidly changes its line of sight to fix it on the stimulus while the blocked eye moves in the same direction, producing the equivalent to a saccade, but then converges to the (blocked) target in synchrony with accommodation. This open-view instrument could be further used for additional experiments with other tasks and conditions. PMID:26504666

  19. Generating relevant kinetic Monte Carlo catalogs using temperature accelerated dynamics with control over the accuracy

    SciTech Connect

    Chatterjee, Abhijit; Voter, Arthur

    2009-01-01

    We develop a variation of the temperature accelerated dynamics (TAD) method, called the p-TAD method, that efficiently generates an on-the-fly kinetic Monte Carlo (KMC) process catalog with control over the accuracy of the catalog. It is assumed that transition state theory is valid. The p-TAD method guarantees that processes relevant at the timescales of interest to the simulation are present in the catalog with a chosen confidence. A confidence measure associated with the process catalog is derived. The dynamics is then studied using the process catalog with the KMC method. Effective accuracy of a p-TAD calculation is derived when a KMC catalog is reused for conditions different from those the catalog was originally generated for. Different KMC catalog generation strategies that exploit the features of the p-TAD method and ensure higher accuracy and/or computational efficiency are presented. The accuracy and the computational requirements of the p-TAD method are assessed. Comparisons to the original TAD method are made. As an example, we study dynamics in sub-monolayer Ag/Cu(110) at the time scale of seconds using the p-TAD method. It is demonstrated that the p-TAD method overcomes several challenges plaguing the conventional KMC method.

  20. Dynamic Network Drivers of Seizure Generation, Propagation and Termination in Human Neocortical Epilepsy

    PubMed Central

    Khambhati, Ankit N.; Davis, Kathryn A.; Oommen, Brian S.; Chen, Stephanie H.; Lucas, Timothy H.; Litt, Brian; Bassett, Danielle S.

    2015-01-01

    The epileptic network is characterized by pathologic, seizure-generating ‘foci’ embedded in a web of structural and functional connections. Clinically, seizure foci are considered optimal targets for surgery. However, poor surgical outcome suggests a complex relationship between foci and the surrounding network that drives seizure dynamics. We developed a novel technique to objectively track seizure states from dynamic functional networks constructed from intracranial recordings. Each dynamical state captures unique patterns of network connections that indicate synchronized and desynchronized hubs of neural populations. Our approach suggests that seizures are generated when synchronous relationships near foci work in tandem with rapidly changing desynchronous relationships from the surrounding epileptic network. As seizures progress, topographical and geometrical changes in network connectivity strengthen and tighten synchronous connectivity near foci—a mechanism that may aid seizure termination. Collectively, our observations implicate distributed cortical structures in seizure generation, propagation and termination, and may have practical significance in determining which circuits to modulate with implantable devices. PMID:26680762

  1. Generation X Goes to College. An Eye-Opening Account of Teaching in Postmodern America.

    ERIC Educational Resources Information Center

    Sacks, Peter

    This book describes how a journalist turned college professor faces the students of Generation X at a community college in California. He discovers a culture war between generations--a culture wave between college teachers, typically Baby Boomers and members of Generation X. This cultural divide is between the modern and postmodern worlds and the…

  2. FOREWORD: International Summer School for Advanced Studies 'Dynamics of open nuclear systems' (PREDEAL12)

    NASA Astrophysics Data System (ADS)

    Delion, D. S.; Zamfir, N. V.; Raduta, A. R.; Gulminelli, F.

    2013-02-01

    This proceedings volume contains the invited lectures and contributions presented at the International Summer School on Nuclear Physics held at Trei Brazi, a summer resort of the Bioterra University, near the city of Predeal, Romania, on 9-20 July 2012. The long tradition of International Summer Schools on Nuclear Physics in Romania dates as far back as 1964, with the event being scheduled every two years. During this period of almost 50 years, many outstanding nuclear scientists have lectured on various topics related to nuclear physics and particle physics. This year we celebrate the 80th birthday of Aureliu Sandulescu, one of the founders of the Romanian school of theoretical nuclear physics. He was Serban Titeica's PhD student, one of Werner Heisenberg's PhD students, and he organized the first edition of this event. Aureliu Sandulescu's major contributions to the field of theoretical nuclear physics are related in particular to the prediction of cluster radioactivity, the physics of open quantum systems and the innovative technique of detecting superheavy nuclei using the double magic projectile 48Ca (Calcium), nowadays a widely used method at the JINR—Dubna and GSI—Darmstadt laboratories. The title of the event, 'Dynamics of Open Nuclear Systems', is in recognition of Aureliu Sandulescu's great personality. The lectures were attended by Romanian and foreign Master and PhD students and young researchers in nuclear physics. About 25 reputable professors and researchers in nuclear physics delivered lectures during this period. According to a well-established tradition, an interval of two hours was allotted for each lecture (including discussions). Therefore we kept a balance between the school and conference format. Two lectures were held during the morning and afternoon sessions. After lecture sessions, three or four oral contributions were given by young scientists. This was a good opportunity for them to present the results of their research in front of

  3. Badlands: An open-source, flexible and parallel framework to study landscape dynamics

    NASA Astrophysics Data System (ADS)

    Salles, T.; Hardiman, L.

    2016-06-01

    In this paper, we propose a minimal numerical model which governing equations describe the following processes: erosion, sedimentation, diffusion and flexure. The model respects conservation laws for water and sediment. The implementation is based on a finite volume approach and the explicit solution stability is ensured by a CFL-like condition. This common core of accepted physical principles governing landscape evolution is ported into a distributed memory parallel environment. Badlands (acronym for BAsin anD LANdscape DynamicS) is an open-source, flexible, TIN-based landscape evolution model, built to simulate landform development and test source-to-sink concepts at regional to continental scale over thousands to millions of years. To illustrate the model capabilities, we first present an example of delta evolution under sea-level fluctuations. The model predicts the successive progradation and transgression phases, the development of depositional and erosional patterns as well as the associated stratigraphic formation. Then, we investigate the importance of climate, and in particular the spatial pattern of precipitation, on the topographic evolution of mountain belts. The simulation and associated quantitative analyses suggest that the main drainage divide migrates and asymmetric topography develops in response to orographic precipitation. This mechanism, documented in recent analogue and numerical experiments, results in a complex reorganisation of drainage networks that our model is able to reproduce.

  4. Controlling the Dynamics of an Open Many-Body Quantum System with Localized Dissipation

    NASA Astrophysics Data System (ADS)

    Barontini, G.; Labouvie, R.; Stubenrauch, F.; Vogler, A.; Guarrera, V.; Ott, H.

    2013-01-01

    We experimentally investigate the action of a localized dissipative potential on a macroscopic matter wave, which we implement by shining an electron beam on an atomic Bose-Einstein condensate (BEC). We measure the losses induced by the dissipative potential as a function of the dissipation strength observing a paradoxical behavior when the strength of the dissipation exceeds a critical limit: for an increase of the dissipation rate the number of atoms lost from the BEC becomes lower. We repeat the experiment for different parameters of the electron beam and we compare our results with a simple theoretical model, finding excellent agreement. By monitoring the dynamics induced by the dissipative defect we identify the mechanisms which are responsible for the observed paradoxical behavior. We finally demonstrate the link between our dissipative dynamics and the measurement of the density distribution of the BEC allowing for a generalized definition of the Zeno effect. Because of the high degree of control on every parameter, our system is a promising candidate for the engineering of fully governable open quantum systems.

  5. Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations.

    PubMed

    Sosso, Gabriele C; Chen, Ji; Cox, Stephen J; Fitzner, Martin; Pedevilla, Philipp; Zen, Andrea; Michaelides, Angelos

    2016-06-22

    The nucleation of crystals in liquids is one of nature's most ubiquitous phenomena, playing an important role in areas such as climate change and the production of drugs. As the early stages of nucleation involve exceedingly small time and length scales, atomistic computer simulations can provide unique insights into the microscopic aspects of crystallization. In this review, we take stock of the numerous molecular dynamics simulations that, in the past few decades, have unraveled crucial aspects of crystal nucleation in liquids. We put into context the theoretical framework of classical nucleation theory and the state-of-the-art computational methods by reviewing simulations of such processes as ice nucleation and the crystallization of molecules in solutions. We shall see that molecular dynamics simulations have provided key insights into diverse nucleation scenarios, ranging from colloidal particles to natural gas hydrates, and that, as a result, the general applicability of classical nucleation theory has been repeatedly called into question. We have attempted to identify the most pressing open questions in the field. We believe that, by improving (i) existing interatomic potentials and (ii) currently available enhanced sampling methods, the community can move toward accurate investigations of realistic systems of practical interest, thus bringing simulations a step closer to experiments. PMID:27228560

  6. Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations

    PubMed Central

    2016-01-01

    The nucleation of crystals in liquids is one of nature’s most ubiquitous phenomena, playing an important role in areas such as climate change and the production of drugs. As the early stages of nucleation involve exceedingly small time and length scales, atomistic computer simulations can provide unique insights into the microscopic aspects of crystallization. In this review, we take stock of the numerous molecular dynamics simulations that, in the past few decades, have unraveled crucial aspects of crystal nucleation in liquids. We put into context the theoretical framework of classical nucleation theory and the state-of-the-art computational methods by reviewing simulations of such processes as ice nucleation and the crystallization of molecules in solutions. We shall see that molecular dynamics simulations have provided key insights into diverse nucleation scenarios, ranging from colloidal particles to natural gas hydrates, and that, as a result, the general applicability of classical nucleation theory has been repeatedly called into question. We have attempted to identify the most pressing open questions in the field. We believe that, by improving (i) existing interatomic potentials and (ii) currently available enhanced sampling methods, the community can move toward accurate investigations of realistic systems of practical interest, thus bringing simulations a step closer to experiments. PMID:27228560

  7. Attosecond pulse generation from aligned molecules—dynamics and propagation in H2+

    NASA Astrophysics Data System (ADS)

    Lorin, E.; Chelkowski, S.; Bandrauk, A. D.

    2008-02-01

    The dynamics and propagation effects in attosecond (asec) pulse generation from high-order harmonic generation (HHG) of aligned one-dimensional (1D) H2+ molecules are investigated from numerical solutions of fully coupled Maxwell and time-dependent Schrödinger equations (Maxwell-TDSEs), in the highly nonlinear nonperturbative regime of laser molecule interaction. Density, laser-phase and propagation length effects are studied on the total electric field and nonlinear polarization from the Maxwell-TDSE for intense few cycle (800 nm) laser pulses interacting with a 1D H2+ gas. We show how single and double asec pulses can be generated and propagated as a function of the phase of individual harmonics created by ultrashort intense laser pulses in aligned H2+ molecules. We find furthermore extension of maximum HHG plateaux with increasing gas pressure.

  8. Dynamic performance and control of a static var generator using cascade multilevel inverters

    SciTech Connect

    Peng, Fang Zheng; Lai, Jih-Sheng

    1996-10-01

    A cascade multilevel inverter is proposed for static VAR shifting, compensation/generation applications. The new cascade M-level inverter consists of (M-1)/2 single-phase full bridges in which each bridge has its own separate dc source. This inverter can generate almost sinusoidal waveform voltage with only one time switching per cycle. It can eliminate the need for transformers in multipulse inverters. A prototype static VAR generator (SVG) system using 11- level cascade inverter (21-level line-to-line voltage waveform) has been built. The output voltage waveform is equivalent to that of a 60- pulse inverter. This paper focuses on dynamic performance of the cascade inverter based SVG system. Control schemes are proposed to achieve a fast response which is impossible for a conventional static VAR compensator (SVC). Analytical, simulated and experimental results show the superiority of the proposed SVG system.

  9. Dynamics and interactions of pulsed laser generated plasma bubbles in dusty plasma liquids

    SciTech Connect

    Chu Hongyu; Liao Chenting; I Lin

    2005-10-31

    The plasma bubble with dust particle depletion can be generated by a nano-second laser pulse focused on one of the dust particles suspended in a strongly coupled dusty plasma liquid. The bubble dynamics at different time scales, including the initial forming and later traveling stages are investigated. In the first stage, dust particles are pushed outward by the outward ion flow associated with the plume generated by the more intensed plasma. The bubble then travels downward at a speed about 60 mm/s associated with a surrounding dipole-like dust flow field. Two bubbles can also be simultaneously generated at different locations by separated laser pulses to study their interactions. Strong coupling is observed between two vertical bubbles. However, two horizontal bubbles are weakly coupled. The possible mechanism is discussed.

  10. Dynamic analysis of combined photovoltaic source and synchronous generator connected to power grid

    NASA Astrophysics Data System (ADS)

    Mahabal, Divya

    In the world of expanding economy and technology, the energy demand is likely to increase even with the global efforts of saving and increasing energy efficiency. Higher oil prices, effects of greenhouse gases, and concerns over other environmental impacts gave way to Distributed Generation (DG). With adequate awareness and support, DG's can meet these rising energy demands at lower prices compared to conventional methods. Extensive research is taking place in different areas like fuel cells, photovoltaic cells, wind turbines, and gas turbines. DG's when connected to a grid increase the overall efficiency of the power grid. It is believed that three-fifth of the world's electricity would account for renewable energy by middle of 21st century. This thesis presents the dynamic analysis of a grid connected photovoltaic (PV) system and synchronous generator. A grid is considered as an infinite bus. The photovol-taic system and synchronous generator act as small scale distributed energy resources. The output of the photovoltaic system depends on the light intensity, temperature, and irradiance levels of sun. The maximum power point tracking and DC/AC converter are also modeled for the photovoltaic system. The PV system is connected to the grid through DC/AC system. Different combinations of PV and synchronous generator are modeled with the grid to study the dynamics of the proposed system. The dynamics of the test system is analyzed by subjecting the system to several disturbances under various conditions. All modules are individually modeled and con-nected using MATLAB/Simulink software package. Results from the study show that, as the penetration of renewable energy sources like PV increases into the power system, the dynamics of the system becomes faster. When considering cases such as load switching, PV cannot deliver more power as the performance of PV depends on environmental conditions. Synchronous generator in power system can produce the required amount of

  11. Forecasting municipal solid waste generation in a fast-growing urban region with system dynamics modeling.

    PubMed

    Dyson, Brian; Chang, Ni-Bin

    2005-01-01

    Both planning and design of municipal solid waste management systems require accurate prediction of solid waste generation. Yet achieving the anticipated prediction accuracy with regard to the generation trends facing many fast-growing regions is quite challenging. The lack of complete historical records of solid waste quantity and quality due to insufficient budget and unavailable management capacity has resulted in a situation that makes the long-term system planning and/or short-term expansion programs intangible. To effectively handle these problems based on limited data samples, a new analytical approach capable of addressing socioeconomic and environmental situations must be developed and applied for fulfilling the prediction analysis of solid waste generation with reasonable accuracy. This study presents a new approach--system dynamics modeling--for the prediction of solid waste generation in a fast-growing urban area based on a set of limited samples. To address the impact on sustainable development city wide, the practical implementation was assessed by a case study in the city of San Antonio, Texas (USA). This area is becoming one of the fastest-growing regions in North America due to the economic impact of the North American Free Trade Agreement (NAFTA). The analysis presents various trends of solid waste generation associated with five different solid waste generation models using a system dynamics simulation tool--Stella. Research findings clearly indicate that such a new forecasting approach may cover a variety of possible causative models and track inevitable uncertainties down when traditional statistical least-squares regression methods are unable to handle such issues. PMID:16009300

  12. Geophysical Fluid Dynamics Laboratory Open Days at the Woods Hole Oceanographic Institution

    NASA Astrophysics Data System (ADS)

    Hyatt, Jason; Cenedese, Claudia; Jensen, Anders

    2015-11-01

    This event was hosted for one week for two consecutive years in 2013 and 2014. It targeted postdocs, graduate students, K-12 students and local community participation. The Geophysical Fluid Dynamics Laboratory at the Woods Hole Oceanographic Institution hosted 10 hands-on demonstrations and displays, with something for all ages, to share the excitement of fluid mechanics and oceanography. The demonstrations/experiments spanned as many fluid mechanics problems as possible in all fields of oceanography and gave insight into using fluids laboratory experiments as a research tool. The chosen experiments were `simple' yet exciting for a 6 year old child, a high school student, a graduate student, and a postdoctoral fellow from different disciplines within oceanography. The laboratory is a perfect environment in which to create excitement and stimulate curiosity. Even what we consider `simple' experiments can fascinate and generate interesting questions from both a 6 year old child and a physics professor. How does an avalanche happen? How does a bath tub vortex form? What happens to waves when they break? How does a hurricane move? Hands-on activities in the fluid dynamics laboratory helped students of all ages in answering these and other intriguing questions. The laboratory experiments/demonstrations were accompanied by `live' videos to assist in the interpretation of the demonstrations. Posters illustrated the oceanographic/scientific applicability and the location on Earth where the dynamics in the experiments occur. Support was given by the WHOI Doherty Chair in Education.

  13. Designing the Next Generation of Tools Using an Open Systems Approach: A Usability Study.

    ERIC Educational Resources Information Center

    Ahern, Terence C.; Jamison, Mark; Olivarez, Arturo

    This paper reports on the results of a usability study that investigated the suitability of using an open systems approach for developing an online assessment application. Issues examined included ease of use, security, effectiveness, and ease of maintenance. Participants were 68 preservice teachers taking a technology integration course. Students…

  14. Abriendo Puertas: Opening Doors to Opportunity--A National Evaluation of Second-Generation Trainers

    ERIC Educational Resources Information Center

    Bridges, Margaret; Cohen, Shana R.; Fuller, Bruce

    2012-01-01

    Abriendo Puertas/Opening Doors (AP/OD) is a comprehensive, 10-session parenting skills and advocacy program developed by and for low-income Latino parents with children ages 0 to 5. Drawing from the real-life experiences of Latino parents and local data about their schools and communities, sessions are filled with interactive activities that aim…

  15. Dynamic materials evaluation by confined plasma ablation and laser-generated shocks

    NASA Astrophysics Data System (ADS)

    Paisley, Dennis L.; Swift, D. C.; Forsman, A. C.; Kyrala, George A.; Johnson, Randall P.; Kopp, Roger A.; Hauer, Allan A.; Wark, Justin S.; Loveridge, A.; Allen, A. M.; Kalantar, Daniel H.

    2000-08-01

    Laser-generated shocks can and have been used to study their effects on single crystal materials during shock compression. While a crystal undergoes shock compression and release, the transient x- ray diffraction (TXD) of the Bragg and Laue signals is indicative of the change in the crystal lattice spacing. The lattice spacing directly relates to the strain in the crystal. From the dynamic lattice data, strain, strain rate, and/or phase change in a material may be determined. Confined ablation plasmas can efficiently launch a flyer plate for direct impact on a target material imparting a well-characterized shock input and generate kilobar to megabar pressure pulses over a wide range of pulse duration (= 20 ns). The laser-launched flyer plates are analogous to those launched by gas guns, but the smaller size provides an experimental method not easily accessible by larger gas gun experiments. With lasers, diagnostic equipment can be easily synchronized to study dynamic material parameters, i.e., single crystal shock dynamics, interfacial bond strengths of thin coatings, grain-interfaces, texture, and high strain rates (106 - 109 sec-1).

  16. Exploration of laser-driven electron-multirescattering dynamics in high-order harmonic generation

    PubMed Central

    Li, Peng-Cheng; Sheu, Yae-Lin; Jooya, Hossein Z.; Zhou, Xiao-Xin; Chu, Shih-I

    2016-01-01

    Multiple rescattering processes play an important role in high-order harmonic generation (HHG) in an intense laser field. However, the underlying multi-rescattering dynamics are still largely unexplored. Here we investigate the dynamical origin of multiple rescattering processes in HHG associated with the odd and even number of returning times of the electron to the parent ion. We perform fully ab initio quantum calculations and extend the empirical mode decomposition method to extract the individual multiple scattering contributions in HHG. We find that the tunneling ionization regime is responsible for the odd number times of rescattering and the corresponding short trajectories are dominant. On the other hand, the multiphoton ionization regime is responsible for the even number times of rescattering and the corresponding long trajectories are dominant. Moreover, we discover that the multiphoton- and tunneling-ionization regimes in multiple rescattering processes occur alternatively. Our results uncover the dynamical origin of multiple rescattering processes in HHG for the first time. It also provides new insight regarding the control of the multiple rescattering processes for the optimal generation of ultrabroad band supercontinuum spectra and the production of single ultrashort attosecond laser pulse. PMID:27596056

  17. Optimal control landscape for the generation of unitary transformations with constrained dynamics

    SciTech Connect

    Hsieh, Michael; Wu, Rebing; Rabitz, Herschel; Lidar, Daniel

    2010-06-15

    The reliable and precise generation of quantum unitary transformations is essential for the realization of a number of fundamental objectives, such as quantum control and quantum information processing. Prior work has explored the optimal control problem of generating such unitary transformations as a surface-optimization problem over the quantum control landscape, defined as a metric for realizing a desired unitary transformation as a function of the control variables. It was found that under the assumption of nondissipative and controllable dynamics, the landscape topology is trap free, which implies that any reasonable optimization heuristic should be able to identify globally optimal solutions. The present work is a control landscape analysis, which incorporates specific constraints in the Hamiltonian that correspond to certain dynamical symmetries in the underlying physical system. It is found that the presence of such symmetries does not destroy the trap-free topology. These findings expand the class of quantum dynamical systems on which control problems are intrinsically amenable to a solution by optimal control.

  18. Exploration of laser-driven electron-multirescattering dynamics in high-order harmonic generation.

    PubMed

    Li, Peng-Cheng; Sheu, Yae-Lin; Jooya, Hossein Z; Zhou, Xiao-Xin; Chu, Shih-I

    2016-01-01

    Multiple rescattering processes play an important role in high-order harmonic generation (HHG) in an intense laser field. However, the underlying multi-rescattering dynamics are still largely unexplored. Here we investigate the dynamical origin of multiple rescattering processes in HHG associated with the odd and even number of returning times of the electron to the parent ion. We perform fully ab initio quantum calculations and extend the empirical mode decomposition method to extract the individual multiple scattering contributions in HHG. We find that the tunneling ionization regime is responsible for the odd number times of rescattering and the corresponding short trajectories are dominant. On the other hand, the multiphoton ionization regime is responsible for the even number times of rescattering and the corresponding long trajectories are dominant. Moreover, we discover that the multiphoton- and tunneling-ionization regimes in multiple rescattering processes occur alternatively. Our results uncover the dynamical origin of multiple rescattering processes in HHG for the first time. It also provides new insight regarding the control of the multiple rescattering processes for the optimal generation of ultrabroad band supercontinuum spectra and the production of single ultrashort attosecond laser pulse. PMID:27596056

  19. Vortex generator installation studies on steady state and dynamic inlet distortion

    NASA Technical Reports Server (NTRS)

    Anderson, Bernhard H.; Gibb, James

    1996-01-01

    The theoretical and experimental work carried out under the NASA/MOD Joint Aeronautical Program has shown that CFD vortex generator installations designs successfully managed inlet duct flow distortion and that significant benefits in flow unsteadiness at the engine face were also present. The main conclusions to date from the collaborative effort between NASA/Lewis and DRA/Bedford are as follows: (1) vortex generator installations can be designed to be effective over a wide range of inlet operating conditions using Computational Fluid Dynamics and formal optimization procedures, (2) reductions in steady state engine face distortion of up to 80% have been measured in the M2129 inlet S-duct using CFD designed vortex generator installations, (3) reductions in flow unsteadiness of up to 80% have been measured in the W129 inlet S-duct using CFD designed vortex generator installations, and (4) the Reduced Navier-Stokes code RNS3D is a useful tool to design vortex generator installations to manage engine face distortions over a wide range of inlet operating conditions.

  20. Assessing uncertainties in a second-generation dynamic vegetation model caused by ecological scale limitations.

    PubMed

    Fisher, Rosie; McDowell, Nate; Purves, Drew; Moorcroft, Paul; Sitch, Stephen; Cox, Peter; Huntingford, Chris; Meir, Patrick; Woodward, F Ian

    2010-08-01

    *Second-generation Dynamic Global Vegetation Models (DGVMs) have recently been developed that explicitly represent the ecological dynamics of disturbance, vertical competition for light, and succession. Here, we introduce a modified second-generation DGVM and examine how the representation of demographic processes operating at two-dimensional spatial scales not represented by these models can influence predicted community structure, and responses of ecosystems to climate change. *The key demographic processes we investigated were seed advection, seed mixing, sapling survival, competitive exclusion and plant mortality. We varied these parameters in the context of a simulated Amazon rainforest ecosystem containing seven plant functional types (PFTs) that varied along a trade-off surface between growth and the risk of starvation induced mortality. *Varying the five unconstrained parameters generated community structures ranging from monocultures to equal co-dominance of the seven PFTs. When exposed to a climate change scenario, the competing impacts of CO(2) fertilization and increasing plant mortality caused ecosystem biomass to diverge substantially between simulations, with mid-21st century biomass predictions ranging from 1.5 to 27.0 kg C m(-2). *Filtering the results using contemporary observation ranges of biomass, leaf area index (LAI), gross primary productivity (GPP) and net primary productivity (NPP) did not substantially constrain the potential outcomes. We conclude that demographic processes represent a large source of uncertainty in DGVM predictions. PMID:20618912

  1. Robust network oscillations during mammalian respiratory rhythm generation driven by synaptic dynamics.

    PubMed

    Guerrier, Claire; Hayes, John A; Fortin, Gilles; Holcman, David

    2015-08-01

    How might synaptic dynamics generate synchronous oscillations in neuronal networks? We address this question in the preBötzinger complex (preBötC), a brainstem neural network that paces robust, yet labile, inspiration in mammals. The preBötC is composed of a few hundred neurons that alternate bursting activity with silent periods, but the mechanism underlying this vital rhythm remains elusive. Using a computational approach to model a randomly connected neuronal network that relies on short-term synaptic facilitation (SF) and depression (SD), we show that synaptic fluctuations can initiate population activities through recurrent excitation. We also show that a two-step SD process allows activity in the network to synchronize (bursts) and generate a population refractory period (silence). The model was validated against an array of experimental conditions, which recapitulate several processes the preBötC may experience. Consistent with the modeling assumptions, we reveal, by electrophysiological recordings, that SF/SD can occur at preBötC synapses on timescales that influence rhythmic population activity. We conclude that nondeterministic neuronal spiking and dynamic synaptic strengths in a randomly connected network are sufficient to give rise to regular respiratory-like rhythmic network activity and lability, which may play an important role in generating the rhythm for breathing and other coordinated motor activities in mammals. PMID:26195782

  2. Event-scale soil moisture dynamics in open evergreen woodlands of southwest Spain

    NASA Astrophysics Data System (ADS)

    Lozano-Parra, F. J.; Schnabel, S.; Gómez-Gutiérrez, Á.

    2012-04-01

    Rangelands with a disperse tree cover occupy large areas in the southwestern part of the Iberian Pensinsula and are also found in other parts of the Mediterranean. In these grazed, savannah-like ecosystems water constitutes an important limiting factor for vegetation growth because of the strong summer dry period, being annual potential evapotranspiration nearly twice the annual rainfall amount. Previous studies by other authors have found lower values of soil water content below the tree canopy as compared to the open spaces, covered only by herbaceous vegetation. The differences of soil moisture between tree covered and open areas vary along the year, commonly being highest during autumn, low when water content is close to saturation and the inverse during summer. Our studies indicate that the spatial variation of soil moisture is more complex. The main objective of this study is to analyze soil moisture dynamics at the event scale below tree canopies (Quercus ilex) and in the open spaces. Because soils are commonly very shallow (Cambisols) and a high concentration of grass roots is found in the upper five centimetres, soil moisture measurements were carried out at 5, 10, 15 and 30 cm depth. The study area is located in Extremadura. Soil moisture is measured continuously with a time resolution of 30 minutes using capacitive sensors and rainfall is registered in 5-minute intervals. Data from the hydrological year 2010-11 are presented here. The main factors which produced variations in soil moisture in the upper 5 cm were amount and duration of the rainfall event. Rainfall intensity was also significantly related with an increase of the water content. At greater depth (30 cm) soil moisture was more related with antecedent rainfall, as for example the amount of precipitation registered 30 and 45 days prior to the event. Maximum increases produced by a rainstorm were approximately 0.20 m3m-3 in grasslands and 0.17 m3m-3 below tree canopy. However, in the uppermost

  3. Automatic generation of predictive dynamic models reveals nuclear phosphorylation as the key Msn2 control mechanism.

    PubMed

    Sunnåker, Mikael; Zamora-Sillero, Elias; Dechant, Reinhard; Ludwig, Christina; Busetto, Alberto Giovanni; Wagner, Andreas; Stelling, Joerg

    2013-05-28

    Predictive dynamical models are critical for the analysis of complex biological systems. However, methods to systematically develop and discriminate among systems biology models are still lacking. We describe a computational method that incorporates all hypothetical mechanisms about the architecture of a biological system into a single model and automatically generates a set of simpler models compatible with observational data. As a proof of principle, we analyzed the dynamic control of the transcription factor Msn2 in Saccharomyces cerevisiae, specifically the short-term mechanisms mediating the cells' recovery after release from starvation stress. Our method determined that 12 of 192 possible models were compatible with available Msn2 localization data. Iterations between model predictions and rationally designed phosphoproteomics and imaging experiments identified a single-circuit topology with a relative probability of 99% among the 192 models. Model analysis revealed that the coupling of dynamic phenomena in Msn2 phosphorylation and transport could lead to efficient stress response signaling by establishing a rate-of-change sensor. Similar principles could apply to mammalian stress response pathways. Systematic construction of dynamic models may yield detailed insight into nonobvious molecular mechanisms. PMID:23716718

  4. Vision Egg: an Open-Source Library for Realtime Visual Stimulus Generation

    PubMed Central

    Straw, Andrew D.

    2008-01-01

    Modern computer hardware makes it possible to produce visual stimuli in ways not previously possible. Arbitrary scenes, from traditional sinusoidal gratings to naturalistic 3D scenes can now be specified on a frame-by-frame basis in realtime. A programming library called the Vision Egg that aims to make it easy to take advantage of these innovations. The Vision Egg is a free, open-source library making use of OpenGL and written in the high-level language Python with extensions in C. Careful attention has been paid to the issues of luminance and temporal calibration, and several interfacing techniques to input devices such as mice, movement tracking systems, and digital triggers are discussed. Together, these make the Vision Egg suitable for many psychophysical, electrophysiological, and behavioral experiments. This software is available for free download at visionegg.org. PMID:19050754

  5. Generation of spin-polarized currents via cross-relaxation with dynamically pumped paramagnetic impurities

    SciTech Connect

    Meriles, Carlos A.; Doherty, Marcus W.

    2014-07-14

    Key to future spintronics and spin-based information processing technologies is the generation, manipulation, and detection of spin polarization in a solid state platform. Here, we theoretically explore an alternative route to spin injection via the use of dynamically polarized nitrogen-vacancy (NV) centers in diamond. We focus on the geometry where carriers and NV centers are confined to proximate, parallel layers and use a “trap-and-release” model to calculate the spin cross-relaxation probabilities between the charge carriers and neighboring NV centers. We identify near-unity regimes of carrier polarization depending on the NV spin state, applied magnetic field, and carrier g-factor. In particular, we find that unlike holes, electron spins are distinctively robust against spin-lattice relaxation by other, unpolarized paramagnetic centers. Further, the polarization process is only weakly dependent on the carrier hopping dynamics, which makes this approach potentially applicable over a broad range of temperatures.

  6. Dynamical generation of Floquet Majorana flat bands in s-wave superconductors

    NASA Astrophysics Data System (ADS)

    Poudel, A.; Ortiz, G.; Viola, L.

    2015-04-01

    We present quantum control techniques to engineer flat bands of symmetry-protected Majorana edge modes in s-wave superconductors. Specifically, we show how periodic control may be employed for designing time-independent effective Hamiltonians, which support Floquet Majorana flat bands, starting from equilibrium conditions that are either topologically trivial or only support a Majorana pair per edge. In the first approach, a suitable modulation of the chemical potential simultaneously induces Majorana flat bands and dynamically activates a pre-existing chiral symmetry which is responsible for their protection. In the second approach, the application of effective parity kicks dynamically generates a desired chiral symmetry by suppressing chirality-breaking terms in the static Hamiltonian. Our results demonstrate how the use of time-dependent control enlarges the range of possibilities for realizing gapless topological superconductivity, potentially enabling access to topological states of matter that have no known equilibrium counterpart.

  7. Generation of Homogeneous Granular Packings:. Contact Dynamics Simulations at Constant Pressure Using Fully Periodic Boundaries

    NASA Astrophysics Data System (ADS)

    Shaebani, M. Reza; Unger, Tamás; Kertész, János

    The contact dynamics (CD) method is an efficient simulation technique of dense granular media where unilateral and frictional contact problems for a large number of rigid bodies have to be solved. In this paper, we present a modified version of the CD to generate homogeneous random packings of rigid grains. CD simulations are performed at constant external pressure, which allows the variation of the size of a periodically repeated cell. We follow the concept of the Andersen dynamics and show how it can be applied within the framework of the CD method. The main challenge here is to handle the interparticle interactions properly, which are based on constraint forces in CD. We implement the proposed algorithm, perform test simulations, and investigate the properties of the final packings.

  8. Parallel, staged opening switch power conditioning techniques for flux compression generator applications

    SciTech Connect

    Reinovsky, R.E.; Levi, P.S.; Bueck, J.C.; Goforth, J.H.

    1985-01-01

    The Air Force Weapons Laboratory, working jointly with Los Alamos National Laboratory, has conducted a series of experiments directed at exploring composite, or staged, switching techniques for use in opening switches in applications which require the conduction of very high currents (or current densities) with very low losses for relatively long times (several tens of microseconds), and the interruption of these currents in much shorter times (ultimately a few hundred nanoseconds). This paper reports the results of those experiments.

  9. Open Source Seismic Software in NOAA's Next Generation Tsunami Warning System

    NASA Astrophysics Data System (ADS)

    Hellman, S. B.; Baker, B. I.; Hagerty, M. T.; Leifer, J. M.; Lisowski, S.; Thies, D. A.; Donnelly, B. K.; Griffith, F. P.

    2014-12-01

    The Tsunami Information technology Modernization (TIM) is a project spearheaded by National Oceanic and Atmospheric Administration to update the United States' Tsunami Warning System software currently employed at the Pacific Tsunami Warning Center (Eva Beach, Hawaii) and the National Tsunami Warning Center (Palmer, Alaska). This entirely open source software project will integrate various seismic processing utilities with the National Weather Service Weather Forecast Office's core software, AWIPS2. For the real-time and near real-time seismic processing aspect of this project, NOAA has elected to integrate the open source portions of GFZ's SeisComP 3 (SC3) processing system into AWIPS2. To provide for better tsunami threat assessments we are developing open source tools for magnitude estimations (e.g., moment magnitude, energy magnitude, surface wave magnitude), detection of slow earthquakes with the Theta discriminant, moment tensor inversions (e.g. W-phase and teleseismic body waves), finite fault inversions, and array processing. With our reliance on common data formats such as QuakeML and seismic community standard messaging systems, all new facilities introduced into AWIPS2 and SC3 will be available as stand-alone tools or could be easily integrated into other real time seismic monitoring systems such as Earthworm, Antelope, etc. Additionally, we have developed a template based design paradigm so that the developer or scientist can efficiently create upgrades, replacements, and/or new metrics to the seismic data processing with only a cursory knowledge of the underlying SC3.

  10. An overview of the use of Open Source in the NASA Langley Atmospheric Science Data Center Archive Next Generation system

    NASA Astrophysics Data System (ADS)

    Dye, R. A.; Perez, J.; Piatko, P. J.; Coogan, S. P.; Parker, L.

    2012-12-01

    The Atmospheric Science Data Center (ASDC) at NASA Langley Research Center is responsible for the archive and distribution of Earth science data in the areas of radiation budget, clouds, aerosols, and tropospheric chemistry. Over the past several years the ASDC has developed and implemented the Archive Next Generation (ANGe) system, a state-of-the-art data ingest, archival, and distribution system to serve the atmospheric sciences data provider and user communities. ANGe employs Open Source technologies including the JBoss Application Server, a PostGIS-enabled PostgreSQL database system to store geospatial metadata, modules from the GeoTools Open Source Java GIS Toolkit including the Java Topology Suite (JTS) and GeoAPI libraries, and other libraries such as the Spring framework. ANGe was developed using a suite of several Open Source tools comprised of Eclipse, Ant, Subversion and Jenkins. ANGe is also deployed into an operational environment that leverages Open Source technologies from the Linux Operating system to tools such as Ganglia for monitoring. This presentation provides an overview of ANGe with a focus on the Open Source technologies employed in the implementation and deployment of the system. The ASDC is part of Langley's Science Directorate. The Data Center was established in 1991 to support NASA's Earth Observing System and the U.S. Global Change Research Program. It is unique among NASA data centers in the size of its archive, cutting edge computing technology, and full range of data services. For more information regarding ASDC data holdings, documentation, tools and services, visit http://eosweb.larc.nasa.gov.

  11. Generating a Pulsatile Pulmonary Flow after Fontan Operation by Means of Computational Fluid Dynamics (CFD)

    NASA Astrophysics Data System (ADS)

    Ghoreyshi, Mostafa

    2011-03-01

    This study considers blood flow in total cavopulmonary connection (TCPC) morphology, which is created in Fontan surgical procedure in patients with single ventricle heart disease. Ordinary process of TCPC operation reduces pulmonary blood flow pulsatility; because of right ventricle being bypassed. This phenomenon causes a lot of side effects for patients. A cardiac surgeon has suggested that keeping main pulmonary artery (MPA) partially open, would increase pulmonary flow pulsations. MPA gets closed in ordinary TCPC operation. The purpose of current study is to verify the effects of keeping MPA partially open on pulmonary flow pulsations, by means of computational fluid dynamics (CFD). 3D geometry is reconstructed from CT Angiography (CTA) scan of a patient who has undergone an ordinary TCPC procedure. The stenosed MPA or pulmonary stenosis (PS) is virtually added to the original geometry. Flow field is studied in six different models in which average antegrade flow (AF) -coming through PS- increases gradually. Results show that adding AF increases flow pulsations in both pulmonary arteries. Moreover, power loss increases with respect to average AF. We conclude that adding AF is an impressive way to increase pulsations of pulmonary flow, but energy losses should be considered too.

  12. {open_quotes}The next generations of Tampella Power`s CFB boilers{close_quotes}

    SciTech Connect

    Alliston, M.G.

    1995-12-31

    The next generation of Tampella Power Corporation`s CFB boilers is discussed in outline form. The following topics are outlined: CFB boiler advantages, CFB boiler fuel flexibility and CYMIC boiler construction.

  13. Coincident steam generator tube rupture and stuck-open safety relief valve carryover tests: MB-2 steam generator transient response test program

    SciTech Connect

    Garbett, K; Mendler, O J; Gardner, G C; Garnsey, R; Young, M Y

    1987-03-01

    In PWR steam generator tube rupture (SGTR) faults, a direct pathway for the release of radioactive fission products can exist if there is a coincident stuck-open safety relief valve (SORV) or if the safety relief valve is cycled. In addition to the release of fission products from the bulk steam generator water by moisture carryover, there exists the possibility that some primary coolant may be released without having first mixed with the bulk water - a process called primary coolant bypassing. The MB-2 Phase II test program was designed specifically to identify the processes for droplet carryover during SGTR faults and to provide data of sufficient accuracy for use in developing physical models and computer codes to describe activity release. The test program consisted of sixteen separate tests designed to cover a range of steady-state and transient fault conditions. These included a full SGTR/SORV transient simulation, two SGTR overfill tests, ten steady-state SGTR tests at water levels ranging from very low levels in the bundle up to those when the dryer was flooded, and three moisture carryover tests without SGTR. In these tests the influence of break location and the effect of bypassing the dryer were also studied. In a final test the behavior with respect to aerosol particles in a dry steam generator, appropriate to a severe accident fault, was investigated.

  14. Improved efficiency of heat generation in nonlinear dynamics of magnetic nanoparticles.

    PubMed

    Rácz, J; de Châtel, P F; Szabó, I A; Szunyogh, L; Nándori, I

    2016-01-01

    The deterministic Landau-Lifshitz-Gilbert equation has been used to investigate the nonlinear dynamics of magnetization and the specific loss power in magnetic nanoparticles with uniaxial anisotropy driven by a rotating magnetic field. We propose a new type of applied field, which is "simultaneously rotating and alternating," i.e., the direction of the rotating external field changes periodically. We show that a more efficient heat generation by magnetic nanoparticles is possible with this new type of applied field and we suggest its possible experimental realization in cancer therapy which requires the enhancement of loss energies. PMID:26871122

  15. Improved efficiency of heat generation in nonlinear dynamics of magnetic nanoparticles

    NASA Astrophysics Data System (ADS)

    Rácz, J.; de Châtel, P. F.; Szabó, I. A.; Szunyogh, L.; Nándori, I.

    2016-01-01

    The deterministic Landau-Lifshitz-Gilbert equation has been used to investigate the nonlinear dynamics of magnetization and the specific loss power in magnetic nanoparticles with uniaxial anisotropy driven by a rotating magnetic field. We propose a new type of applied field, which is "simultaneously rotating and alternating," i.e., the direction of the rotating external field changes periodically. We show that a more efficient heat generation by magnetic nanoparticles is possible with this new type of applied field and we suggest its possible experimental realization in cancer therapy which requires the enhancement of loss energies.

  16. Use of Aria to simulate laser weld pool dynamics for neutron generator production.

    SciTech Connect

    Noble, David R.; Notz, Patrick K.; Martinez, Mario J.; Kraynik, Andrew Michael

    2007-09-01

    This report documents the results for the FY07 ASC Integrated Codes Level 2 Milestone number 2354. The description for this milestone is, 'Demonstrate level set free surface tracking capabilities in ARIA to simulate the dynamics of the formation and time evolution of a weld pool in laser welding applications for neutron generator production'. The specialized boundary conditions and material properties for the laser welding application were implemented and verified by comparison with existing, two-dimensional applications. Analyses of stationary spot welds and traveling line welds were performed and the accuracy of the three-dimensional (3D) level set algorithm is assessed by comparison with 3D moving mesh calculations.

  17. Dynamical generation of phase-squeezed states in two-component Bose-Einstein condensates

    SciTech Connect

    Jin, G. R.; An, Y.; Yan, T.; Lu, Z. S.

    2010-12-15

    As an ''input'' state of a linear (Mach-Zehnder or Ramsey) interferometer, the phase-squeezed state proposed by Berry and Wiseman exhibits the best sensitivity approaching to the Heisenberg limit [Phys. Rev. Lett. 85, 5098 (2000)]. Similar with the Berry and Wiseman's state, we find that two kinds of phase-squeezed states can be generated dynamically with atomic Bose-Einstein condensates confined in a symmetric double-well potential, which shows squeezing along spin operator S{sub y} and antisqueezing along S{sub z}, leading to subshot-noise phase estimation.

  18. Dynamics of a Flywheel Energy Storage System Supporting a Wind Turbine Generator in a Microgrid

    NASA Astrophysics Data System (ADS)

    Nair S, Gayathri; Senroy, Nilanjan

    2016-02-01

    Integration of an induction machine based flywheel energy storage system with a wind energy conversion system is implemented in this paper. The nonlinear and linearized models of the flywheel are studied, compared and a reduced order model of the same simulated to analyze the influence of the flywheel inertia and control in system response during a wind power change. A quantification of the relation between the inertia of the flywheel and the controller gain is obtained which allows the system to be considered as a reduced order model that is more controllable in nature. A microgrid setup comprising of the flywheel energy storage system, a two mass model of a DFIG based wind turbine generator and a reduced order model of a diesel generator is utilized to analyse the microgrid dynamics accurately in the event of frequency variations arising due to wind power change. The response of the microgrid with and without the flywheel is studied.

  19. Generation and propagation dynamics of Airy beam with the tunable tail

    NASA Astrophysics Data System (ADS)

    Liu, Huilong; Lü, Yanfei; Xia, Jing; Pu, Xiaoyun; Zhang, Li

    2016-05-01

    We introduce a new kind of Airy beam called Airy beam with the tunable tail, which can be generated from the elliptical flat-topped Gaussian beam. The analytical formula of Airy beam with the tunable tail is derived. Airy beam with the single tail can be obtained by adjusting the ration of the beam width of elliptical flat-topped Gaussian beam. The tail length of Airy beam can be controlled by the order N of incident beam. The normalized intensity distributions of Airy beam with the tunable tail propagating in free space are studied, and the propagation dynamics of Airy beam with the single tail are investigated. Compared with the Airy beam generated from the fundamental Gaussian beam or the flat-topped Gaussian beam, some interesting and useful information has been found.

  20. Dynamic generation of Ince-Gaussian modes with a digital micromirror device

    SciTech Connect

    Ren, Yu-Xuan; Fang, Zhao-Xiang; Chen, Yue; Lu, Rong-De; Gong, Lei; Huang, Kun

    2015-04-07

    Ince-Gaussian (IG) beam with elliptical profile, as a connection between Hermite-Gaussian (HG) and Laguerre-Gaussian (LG) beams, has showed unique advantages in some applications such as quantum entanglement and optical micromanipulation. However, its dynamic generation with high switching frequency is still challenging. Here, we experimentally reported the quick generation of Ince-Gaussian beam by using a digital micro-mirror device (DMD), which has the highest switching frequency of 5.2 kHz in principle. The configurable properties of DMD allow us to observe the quasi-smooth variation from LG (with ellipticity ε=0) to IG and HG (ε=∞) beam. This approach might pave a path to high-speed quantum communication in terms of IG beam. Additionally, the characterized axial plane intensity distribution exhibits a 3D mould potentially being employed for optical micromanipulation.

  1. FOREWORD: International Summer School for Advanced Studies 'Dynamics of open nuclear systems' (PREDEAL12)

    NASA Astrophysics Data System (ADS)

    Delion, D. S.; Zamfir, N. V.; Raduta, A. R.; Gulminelli, F.

    2013-02-01

    This proceedings volume contains the invited lectures and contributions presented at the International Summer School on Nuclear Physics held at Trei Brazi, a summer resort of the Bioterra University, near the city of Predeal, Romania, on 9-20 July 2012. The long tradition of International Summer Schools on Nuclear Physics in Romania dates as far back as 1964, with the event being scheduled every two years. During this period of almost 50 years, many outstanding nuclear scientists have lectured on various topics related to nuclear physics and particle physics. This year we celebrate the 80th birthday of Aureliu Sandulescu, one of the founders of the Romanian school of theoretical nuclear physics. He was Serban Titeica's PhD student, one of Werner Heisenberg's PhD students, and he organized the first edition of this event. Aureliu Sandulescu's major contributions to the field of theoretical nuclear physics are related in particular to the prediction of cluster radioactivity, the physics of open quantum systems and the innovative technique of detecting superheavy nuclei using the double magic projectile 48Ca (Calcium), nowadays a widely used method at the JINR—Dubna and GSI—Darmstadt laboratories. The title of the event, 'Dynamics of Open Nuclear Systems', is in recognition of Aureliu Sandulescu's great personality. The lectures were attended by Romanian and foreign Master and PhD students and young researchers in nuclear physics. About 25 reputable professors and researchers in nuclear physics delivered lectures during this period. According to a well-established tradition, an interval of two hours was allotted for each lecture (including discussions). Therefore we kept a balance between the school and conference format. Two lectures were held during the morning and afternoon sessions. After lecture sessions, three or four oral contributions were given by young scientists. This was a good opportunity for them to present the results of their research in front of

  2. Programmable personality interface for the dynamic infrared scene generator (IRSG2)

    NASA Astrophysics Data System (ADS)

    Buford, James A., Jr.; Mobley, Scott B.; Mayhall, Anthony J.; Braselton, William J.

    1998-07-01

    As scene generator platforms begin to rely specifically on commercial off-the-shelf (COTS) hardware and software components, the need for high speed programmable personality interfaces (PPIs) are required for interfacing to Infrared (IR) flight computer/processors and complex IR projectors in the hardware-in-the-loop (HWIL) simulation facilities. Recent technological advances and innovative applications of established technologies are beginning to allow development of cost effective PPIs to interface to COTS scene generators. At the U.S. Army Aviation and Missile Command (AMCOM) Missile Research, Development, and Engineering Center (MRDEC) researchers have developed such a PPI to reside between the AMCOM MRDEC IR Scene Generator (IRSG) and either a missile flight computer or the dynamic Laser Diode Array Projector (LDAP). AMCOM MRDEC has developed several PPIs for the first and second generation IRSGs (IRSG1 and IRSG2), which are based on Silicon Graphics Incorporated (SGI) Onyx and Onyx2 computers with Reality Engine 2 (RE2) and Infinite Reality (IR/IR2) graphics engines. This paper provides an overview of PPIs designed, integrated, tested, and verified at AMCOM MRDEC, specifically the IRSG2's PPI.

  3. Light-cone wave function approach to open heavy flavor dynamics in QCD matter

    NASA Astrophysics Data System (ADS)

    Sharma, Rishi; Vitev, Ivan; Zhang, Ben-Wei

    2009-11-01

    We calculate the lowest-order charm and beauty parton distribution functions in and fragmentation functions into D and B mesons using the operator definitions of factorized perturbative quantum chromodynamics (QCD). In the vacuum, we find the leading corrections that arise from the structure of the final-state hadrons. Quark-antiquark potentials extracted from the lattice are employed to demonstrate the existence of open heavy flavor bound-state solutions in the quark-gluon plasma in the vicinity of the critical temperature. We provide first results for the in-medium modification of the heavy-quark distribution and decay probabilities in a comoving plasma. In an improved perturbative QCD description of heavy-flavor dynamics in the thermal medium, we combine D- and B-meson formation and dissociation with parton-level charm and beauty quark quenching to obtain predictions for the heavy-meson and nonphotonic-electron suppression in Cu+Cu and Pb+Pb collisions at the Relativistic Heavy Ion Collider and the Large Hadron Collider, respectively.

  4. Dynamic online surveys and experiments with the free open-source software dynQuest.

    PubMed

    Rademacher, Jens D M; Lippke, Sonia

    2007-08-01

    With computers and the World Wide Web widely available, collecting data through Web browsers is an attractive method utilized by the social sciences. In this article, conducting PC- and Web-based trials with the software package dynQuest is described. The software manages dynamic questionnaire-based trials over the Internet or on single computers, possibly as randomized control trials (RCT), if two or more groups are involved. The choice of follow-up questions can depend on previous responses, as needed for matched interventions. Data are collected in a simple text-based database that can be imported easily into other programs for postprocessing and statistical analysis. The software consists of platform-independent scripts written in the programming language PERL that use the common gateway interface between Web browser and server for submission of data through HTML forms. Advantages of dynQuest are parsimony, simplicity in use and installation, transparency, and reliability. The program is available as open-source freeware from the authors. PMID:17958153

  5. DCEMRI.jl: a fast, validated, open source toolkit for dynamic contrast enhanced MRI analysis

    PubMed Central

    Li, Xia; Arlinghaus, Lori R.; Yankeelov, Thomas E.; Welch, E. Brian

    2015-01-01

    We present a fast, validated, open-source toolkit for processing dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) data. We validate it against the Quantitative Imaging Biomarkers Alliance (QIBA) Standard and Extended Tofts-Kety phantoms and find near perfect recovery in the absence of noise, with an estimated 10–20× speedup in run time compared to existing tools. To explain the observed trends in the fitting errors, we present an argument about the conditioning of the Jacobian in the limit of small and large parameter values. We also demonstrate its use on an in vivo data set to measure performance on a realistic application. For a 192 × 192 breast image, we achieved run times of <1 s. Finally, we analyze run times scaling with problem size and find that the run time per voxel scales as O(N1.9), where N is the number of time points in the tissue concentration curve. DCEMRI.jl was much faster than any other analysis package tested and produced comparable accuracy, even in the presence of noise. PMID:25922795

  6. The Atmospheric Scanning Electron Microscope with open sample space observes dynamic phenomena in liquid or gas.

    PubMed

    Suga, Mitsuo; Nishiyama, Hidetoshi; Konyuba, Yuji; Iwamatsu, Shinnosuke; Watanabe, Yoshiyuki; Yoshiura, Chie; Ueda, Takumi; Sato, Chikara

    2011-12-01

    Although conventional electron microscopy (EM) requires samples to be in vacuum, most chemical and physical reactions occur in liquid or gas. The Atmospheric Scanning Electron Microscope (ASEM) can observe dynamic phenomena in liquid or gas under atmospheric pressure in real time. An electron-permeable window made of pressure-resistant 100 nm-thick silicon nitride (SiN) film, set into the bottom of the open ASEM sample dish, allows an electron beam to be projected from underneath the sample. A detector positioned below captures backscattered electrons. Using the ASEM, we observed the radiation-induced self-organization process of particles, as well as phenomena accompanying volume change, including evaporation-induced crystallization. Using the electrochemical ASEM dish, we observed tree-like electrochemical depositions on the cathode. In silver nitrate solution, we observed silver depositions near the cathode forming incidental internal voids. The heated ASEM dish allowed observation of patterns of contrast in melting and solidifying solder. Finally, to demonstrate its applicability for monitoring and control of industrial processes, silver paste and solder paste were examined at high throughput. High resolution, imaging speed, flexibility, adaptability, and ease of use facilitate the observation of previously difficult-to-image phenomena, and make the ASEM applicable to various fields. PMID:22088441

  7. Quantum speed limits in open systems: Non-Markovian dynamics without rotating-wave approximation

    PubMed Central

    Sun, Zhe; Liu, Jing; Ma, Jian; Wang, Xiaoguang

    2015-01-01

    We derive an easily computable quantum speed limit (QSL) time bound for open systems whose initial states can be chosen as either pure or mixed states. Moreover, this QSL time is applicable to either Markovian or non-Markovian dynamics. By using of a hierarchy equation method, we numerically study the QSL time bound in a qubit system interacting with a single broadened cavity mode without rotating-wave, Born and Markovian approximation. By comparing with rotating-wave approximation (RWA) results, we show that the counter-rotating terms are helpful to increase evolution speed. The problem of non-Markovianity is also considered. We find that for non-RWA cases, increasing system-bath coupling can not always enhance the non-Markovianity, which is qualitatively different from the results with RWA. When considering the relation between QSL and non-Markovianity, we find that for small broadening widths of the cavity mode, non-Markovianity can increase the evolution speed in either RWA or non-RWA cases, while, for larger broadening widths, it is not true for non-RWA cases. PMID:25676589

  8. Simulating open quantum dynamics with time-dependent variational matrix product states: Towards microscopic correlation of environment dynamics and reduced system evolution

    NASA Astrophysics Data System (ADS)

    Schröder, Florian A. Y. N.; Chin, Alex W.

    2016-02-01

    We report the development of an efficient many-body algorithm for simulating open quantum system dynamics that utilizes a time-dependent variational principle for matrix product states to evolve large system-environment states. Capturing all system-environment correlations, we reproduce the nonperturbative, quantum-critical dynamics of the zero-temperature spin-boson model, and then exploit the many-body information to visualize the complete time-frequency spectrum of the environmental excitations. Our "environmental spectra" reveal correlated vibrational motion in polaronic modes which preserve their vibrational coherence during incoherent spin relaxation, demonstrating how environment information could yield valuable insights into complex quantum dissipative processes.

  9. Post-scram Liquid Metal cooled Fast Breeder Reactor (LMFBR) neat transport system dynamics and steam generator control

    NASA Astrophysics Data System (ADS)

    Brukx, J. F. L. M.

    1982-06-01

    Loop type LMFBR heat transport system dynamics after reactor shutdown and during subsequent decay heat removal are considered with emphasis on steam generator dynamics including the development and evaluation of various post-scram steam generator control systems, and natural circulation of the sodium coolant, including the influence of superimposed free convection on forced convection heat transfer and pressure drop. The normal operating and decay heat removal functions of the overall heat transport system are described.

  10. Improvements of high-power diode laser line generators open up new application fields

    NASA Astrophysics Data System (ADS)

    Meinschien, J.; Bayer, A.; Bruns, P.; Aschke, L.; Lissotschenko, V. N.

    2009-02-01

    Beam shaping improvements of line generators based on high power diode lasers lead to new application fields as hardening, annealing or cutting of various materials. Of special interest is the laser treatment of silicon. An overview of the wide variety of applications is presented with special emphasis of the relevance of unique laser beam parameters like power density and beam uniformity. Complementary to vision application and plastic processing, these new application markets become more and more important and can now be addressed by high power diode laser line generators. Herewith, a family of high power diode laser line generators is presented that covers this wide spectrum of application fields with very different requirements, including new applications as cutting of silicon or glass, as well as the beam shaping concepts behind it. A laser that generates a 5m long and 4mm wide homogeneous laser line is shown with peak intensities of 0.2W/cm2 for inspection of railway catenaries as well as a laser that generates a homogeneous intensity distribution of 60mm x 2mm size with peak intensities of 225W/cm2 for plastic processing. For the annealing of silicon surfaces, a laser was designed that generates an extraordinary uniform intensity distribution with residual inhomogeneities (contrast ratio) of less than 3% over a line length of 11mm and peak intensities of up to 75kW/cm2. Ultimately, a laser line is shown with a peak intensity of 250kW/cm2 used for cutting applications. Results of various application tests performed with the above mentioned lasers are discussed, particularly the surface treatment of silicon and the cutting of glass.

  11. CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

    SciTech Connect

    Lee, Jumin; Cheng, Xi; Swails, Jason M.; Yeom, Min Sun; Eastman, Peter K.; Lemkul, Justin A.; Wei, Shuai; Buckner, Joshua; Jeong, Jong Cheol; Qi, Yifei; Jo, Sunhwan; Pande, Vijay S.; Case, David A.; Brooks, Charles L.; MacKerell, Alexander D.; Klauda, Jeffery B.; Im, Wonpil

    2015-11-12

    Here we report that proper treatment of nonbonded interactions is essential for the accuracy of molecular dynamics (MD) simulations, especially in studies of lipid bilayers. The use of the CHARMM36 force field (C36 FF) in different MD simulation programs can result in disagreements with published simulations performed with CHARMM due to differences in the protocols used to treat the long-range and 1-4 nonbonded interactions. In this study, we systematically test the use of the C36 lipid FF in NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM. A wide range of Lennard-Jones (LJ) cutoff schemes and integrator algorithms were tested to find the optimal simulation protocol to best match bilayer properties of six lipids with varying acyl chain saturation and head groups. MD simulations of a 1,2-dipalmitoyl-sn-phosphatidylcholine (DPPC) bilayer were used to obtain the optimal protocol for each program. MD simulations with all programs were found to reasonably match the DPPC bilayer properties (surface area per lipid, chain order parameters, and area compressibility modulus) obtained using the standard protocol used in CHARMM as well as from experiments. The optimal simulation protocol was then applied to the other five lipid simulations and resulted in excellent agreement between results from most simulation programs as well as with experimental data. AMBER compared least favorably with the expected membrane properties, which appears to be due to its use of the hard-truncation in the LJ potential versus a force-based switching function used to smooth the LJ potential as it approaches the cutoff distance. The optimal simulation protocol for each program has been implemented in CHARMM-GUI. This protocol is expected to be applicable to the remainder of the additive C36 FF including the proteins, nucleic acids, carbohydrates, and small molecules.

  12. CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

    PubMed Central

    2015-01-01

    Proper treatment of nonbonded interactions is essential for the accuracy of molecular dynamics (MD) simulations, especially in studies of lipid bilayers. The use of the CHARMM36 force field (C36 FF) in different MD simulation programs can result in disagreements with published simulations performed with CHARMM due to differences in the protocols used to treat the long-range and 1-4 nonbonded interactions. In this study, we systematically test the use of the C36 lipid FF in NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM. A wide range of Lennard-Jones (LJ) cutoff schemes and integrator algorithms were tested to find the optimal simulation protocol to best match bilayer properties of six lipids with varying acyl chain saturation and head groups. MD simulations of a 1,2-dipalmitoyl-sn-phosphatidylcholine (DPPC) bilayer were used to obtain the optimal protocol for each program. MD simulations with all programs were found to reasonably match the DPPC bilayer properties (surface area per lipid, chain order parameters, and area compressibility modulus) obtained using the standard protocol used in CHARMM as well as from experiments. The optimal simulation protocol was then applied to the other five lipid simulations and resulted in excellent agreement between results from most simulation programs as well as with experimental data. AMBER compared least favorably with the expected membrane properties, which appears to be due to its use of the hard-truncation in the LJ potential versus a force-based switching function used to smooth the LJ potential as it approaches the cutoff distance. The optimal simulation protocol for each program has been implemented in CHARMM-GUI. This protocol is expected to be applicable to the remainder of the additive C36 FF including the proteins, nucleic acids, carbohydrates, and small molecules. PMID:26631602

  13. CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

    DOE PAGESBeta

    Lee, Jumin; Cheng, Xi; Swails, Jason M.; Yeom, Min Sun; Eastman, Peter K.; Lemkul, Justin A.; Wei, Shuai; Buckner, Joshua; Jeong, Jong Cheol; Qi, Yifei; et al

    2015-11-12

    Here we report that proper treatment of nonbonded interactions is essential for the accuracy of molecular dynamics (MD) simulations, especially in studies of lipid bilayers. The use of the CHARMM36 force field (C36 FF) in different MD simulation programs can result in disagreements with published simulations performed with CHARMM due to differences in the protocols used to treat the long-range and 1-4 nonbonded interactions. In this study, we systematically test the use of the C36 lipid FF in NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM. A wide range of Lennard-Jones (LJ) cutoff schemes and integrator algorithms were tested to find themore » optimal simulation protocol to best match bilayer properties of six lipids with varying acyl chain saturation and head groups. MD simulations of a 1,2-dipalmitoyl-sn-phosphatidylcholine (DPPC) bilayer were used to obtain the optimal protocol for each program. MD simulations with all programs were found to reasonably match the DPPC bilayer properties (surface area per lipid, chain order parameters, and area compressibility modulus) obtained using the standard protocol used in CHARMM as well as from experiments. The optimal simulation protocol was then applied to the other five lipid simulations and resulted in excellent agreement between results from most simulation programs as well as with experimental data. AMBER compared least favorably with the expected membrane properties, which appears to be due to its use of the hard-truncation in the LJ potential versus a force-based switching function used to smooth the LJ potential as it approaches the cutoff distance. The optimal simulation protocol for each program has been implemented in CHARMM-GUI. This protocol is expected to be applicable to the remainder of the additive C36 FF including the proteins, nucleic acids, carbohydrates, and small molecules.« less

  14. Next Generation Air Quality Platform: Openness and Interoperability for the Internet of Things

    PubMed Central

    Kotsev, Alexander; Schade, Sven; Craglia, Massimo; Gerboles, Michel; Spinelle, Laurent; Signorini, Marco

    2016-01-01

    The widespread diffusion of sensors, mobile devices, social media and open data are reconfiguring the way data underpinning policy and science are being produced and consumed. This in turn is creating both opportunities and challenges for policy-making and science. There can be major benefits from the deployment of the IoT in smart cities and environmental monitoring, but to realize such benefits, and reduce potential risks, there is an urgent need to address current limitations, including the interoperability of sensors, data quality, security of access and new methods for spatio-temporal analysis. Within this context, the manuscript provides an overview of the AirSensEUR project, which establishes an affordable open software/hardware multi-sensor platform, which is nonetheless able to monitor air pollution at low concentration levels. AirSensEUR is described from the perspective of interoperable data management with emphasis on possible use case scenarios, where reliable and timely air quality data would be essential. PMID:26999160

  15. Next Generation Air Quality Platform: Openness and Interoperability for the Internet of Things.

    PubMed

    Kotsev, Alexander; Schade, Sven; Craglia, Massimo; Gerboles, Michel; Spinelle, Laurent; Signorini, Marco

    2016-01-01

    The widespread diffusion of sensors, mobile devices, social media and open data are reconfiguring the way data underpinning policy and science are being produced and consumed. This in turn is creating both opportunities and challenges for policy-making and science. There can be major benefits from the deployment of the IoT in smart cities and environmental monitoring, but to realize such benefits, and reduce potential risks, there is an urgent need to address current limitations, including the interoperability of sensors, data quality, security of access and new methods for spatio-temporal analysis. Within this context, the manuscript provides an overview of the AirSensEUR project, which establishes an affordable open software/hardware multi-sensor platform, which is nonetheless able to monitor air pollution at low concentration levels. AirSensEUR is described from the perspective of interoperable data management with emphasis on possible use case scenarios, where reliable and timely air quality data would be essential. PMID:26999160

  16. MSEBAG: a dynamic classifier ensemble generation based on `minimum-sufficient ensemble' and bagging

    NASA Astrophysics Data System (ADS)

    Chen, Lei; Kamel, Mohamed S.

    2016-01-01

    In this paper, we propose a dynamic classifier system, MSEBAG, which is characterised by searching for the 'minimum-sufficient ensemble' and bagging at the ensemble level. It adopts an 'over-generation and selection' strategy and aims to achieve a good bias-variance trade-off. In the training phase, MSEBAG first searches for the 'minimum-sufficient ensemble', which maximises the in-sample fitness with the minimal number of base classifiers. Then, starting from the 'minimum-sufficient ensemble', a backward stepwise algorithm is employed to generate a collection of ensembles. The objective is to create a collection of ensembles with a descending fitness on the data, as well as a descending complexity in the structure. MSEBAG dynamically selects the ensembles from the collection for the decision aggregation. The extended adaptive aggregation (EAA) approach, a bagging-style algorithm performed at the ensemble level, is employed for this task. EAA searches for the competent ensembles using a score function, which takes into consideration both the in-sample fitness and the confidence of the statistical inference, and averages the decisions of the selected ensembles to label the test pattern. The experimental results show that the proposed MSEBAG outperforms the benchmarks on average.

  17. Simulating Flying Insects Using Dynamics and Data-Driven Noise Modeling to Generate Diverse Collective Behaviors.

    PubMed

    Ren, Jiaping; Wang, Xinjie; Jin, Xiaogang; Manocha, Dinesh

    2016-01-01

    We present a biologically plausible dynamics model to simulate swarms of flying insects. Our formulation, which is based on biological conclusions and experimental observations, is designed to simulate large insect swarms of varying densities. We use a force-based model that captures different interactions between the insects and the environment and computes collision-free trajectories for each individual insect. Furthermore, we model the noise as a constructive force at the collective level and present a technique to generate noise-induced insect movements in a large swarm that are similar to those observed in real-world trajectories. We use a data-driven formulation that is based on pre-recorded insect trajectories. We also present a novel evaluation metric and a statistical validation approach that takes into account various characteristics of insect motions. In practice, the combination of Curl noise function with our dynamics model is used to generate realistic swarm simulations and emergent behaviors. We highlight its performance for simulating large flying swarms of midges, fruit fly, locusts and moths and demonstrate many collective behaviors, including aggregation, migration, phase transition, and escape responses. PMID:27187068

  18. Monitoring the Photocleaving Dynamics of Colloidal MicroRNA-Functionalized Gold Nanoparticles Using Second Harmonic Generation.

    PubMed

    Kumal, Raju R; Landry, Corey R; Abu-Laban, Mohammad; Hayes, Daniel J; Haber, Louis H

    2015-09-15

    Photoactivated drug delivery systems using gold nanoparticles provide the promise of spatiotemporal control of delivery that is crucial for applications ranging from regenerative medicine to cancer therapy. In this study, we use second harmonic generation (SHG) spectroscopy to monitor the light-activated controlled release of oligonucleotides from the surface of colloidal gold nanoparticles. MicroRNA is functionalized to spherical gold nanoparticles using a nitrobenzyl linker that undergoes photocleaving upon ultraviolet irradiation. The SHG signal generated from the colloidal nanoparticle sample is shown to be a sensitive probe for monitoring the photocleaving dynamics in real time. The photocleaving irradiation wavelength is scanned to show maximum efficiency on resonance at 365 nm, and the kinetics are investigated at varying irradiation powers to demonstrate that the nitrobenzyl photocleaving is a one-photon process. Additional characterization methods including electrophoretic mobility measurements, extinction spectroscopy, and fluorimetry are used to verify the SHG results, leading to a better understanding of the photocleaving dynamics for this model oligonucleotide therapeutic delivery system. PMID:26313536

  19. Simulating Flying Insects Using Dynamics and Data-Driven Noise Modeling to Generate Diverse Collective Behaviors

    PubMed Central

    Ren, Jiaping; Wang, Xinjie; Manocha, Dinesh

    2016-01-01

    We present a biologically plausible dynamics model to simulate swarms of flying insects. Our formulation, which is based on biological conclusions and experimental observations, is designed to simulate large insect swarms of varying densities. We use a force-based model that captures different interactions between the insects and the environment and computes collision-free trajectories for each individual insect. Furthermore, we model the noise as a constructive force at the collective level and present a technique to generate noise-induced insect movements in a large swarm that are similar to those observed in real-world trajectories. We use a data-driven formulation that is based on pre-recorded insect trajectories. We also present a novel evaluation metric and a statistical validation approach that takes into account various characteristics of insect motions. In practice, the combination of Curl noise function with our dynamics model is used to generate realistic swarm simulations and emergent behaviors. We highlight its performance for simulating large flying swarms of midges, fruit fly, locusts and moths and demonstrate many collective behaviors, including aggregation, migration, phase transition, and escape responses. PMID:27187068

  20. Interaction of a Dynamic Vortex Generator with a laminar Boundary Layer

    NASA Astrophysics Data System (ADS)

    Cruz, Erica; Chan, Wilfred; Hayostek, Shelby; Leong, Chia Min; Clingman, Dan; Amitay, Michael

    2014-11-01

    The effectiveness in delaying boundary layer separation by vortex generators (VGs) is well established. However, there could be a drag penalty when the flow it attached. Therefore, in this study, a piezo-based dynamic vortex generator was developed with the goal of mitigating any additional drag that might occur when not in use. The dynamic VG (DVG) was driven by bimorph piezoelectric motor and was designed to operate at frequencies up to 300 Hz. Experimental studies were performed on the interaction of the laminar boundary layer over a flat plate with a DVG placed at a skew angle of 18° with respect to the free-stream direction. The experiments were conducted for different height of the DVG, where the Reynolds number based on the local boundary layer thickness was about 2000. In addition, the DVG was oscillating at different frequencies and amplitudes and its effect of the flow field was compared to a steady VG. Simultaneous measurements of the DVG performance and the flow field behind it were accomplished using a laser displacement sensor and Stereoscopic Particle Image Velocimetry (SPIV), respectively. The SPIV data were taken at multiple downstream locations and the flow structures formed in the wake of the DVG will be discussed.

  1. Dynamical mass generation in QED with magnetic fields: Arbitrary field strength and coupling constant

    SciTech Connect

    Rojas, Eduardo; Ayala, Alejandro; Bashir, Adnan; Raya, Alfredo

    2008-05-01

    We study the dynamical generation of masses for fundamental fermions in quenched quantum electrodynamics, in the presence of magnetics fields of arbitrary strength, by solving the Schwinger-Dyson equation for the fermion self-energy in the rainbow approximation. We employ the Ritus eigenfunction formalism which provides a neat solution to the technical problem of summing over all Landau levels. It is well known that magnetic fields catalyze the generation of fermion mass m for arbitrarily small values of electromagnetic coupling {alpha}. For intense fields it is also well known that m{proportional_to}{radical}(eB). Our approach allows us to span all regimes of parameters {alpha} and eB. We find that m{proportional_to}{radical}(eB) provided {alpha} is small. However, when {alpha} increases beyond the critical value {alpha}{sub c} which marks the onslaught of dynamical fermion masses in vacuum, we find m{proportional_to}{lambda}, the cutoff required to regularize the ultraviolet divergences. Our method permits us to verify the results available in literature for the limiting cases of eB and {alpha}. We also point out the relevance of our work for possible physical applications.

  2. Ultrashort laser ablation of bulk copper targets: Dynamics and size distribution of the generated nanoparticles

    SciTech Connect

    Tsakiris, N.; Gill-Comeau, M.; Lewis, L. J.; Anoop, K. K.; Ausanio, G.; Bruzzese, R.; Amoruso, S.

    2014-06-28

    We address the role of laser pulse fluence on expansion dynamics and size distribution of the nanoparticles produced by irradiating a metallic target with an ultrashort laser pulse in a vacuum, an issue for which contrasting indications are present in the literature. To this end, we have carried out a combined theoretical and experimental analysis of laser ablation of a bulk copper target with ≈50 fs, 800 nm pulses, in an interval of laser fluencies going from few to several times the ablation threshold. On one side, molecular dynamics simulations, with two-temperature model, describe the decomposition of the material through the analysis of the evolution of thermodynamic trajectories in the material phase diagram, and allow estimating the size distribution of the generated nano-aggregates. On the other side, atomic force microscopy of less than one layer nanoparticles deposits on witness plates, and fast imaging of the nanoparticles broadband optical emission provide the corresponding experimental characterization. Both experimental and numerical findings agree on a size distribution characterized by a significant fraction (≈90%) of small nanoparticles, and a residual part (≈10%) spanning over a rather large size interval, evidencing a weak dependence of the nanoparticles sizes on the laser pulse fluence. Numerical and experimental findings show a good degree of consistency, thus suggesting that modeling can realistically support the search for experimental methods leading to an improved control over the generation of nanoparticles by ultrashort laser ablation.

  3. Generation of Look-Up Tables for Dynamic Job Shop Scheduling Decision Support Tool

    NASA Astrophysics Data System (ADS)

    Oktaviandri, Muchamad; Hassan, Adnan; Mohd Shaharoun, Awaluddin

    2016-02-01

    Majority of existing scheduling techniques are based on static demand and deterministic processing time, while most job shop scheduling problem are concerned with dynamic demand and stochastic processing time. As a consequence, the solutions obtained from the traditional scheduling technique are ineffective wherever changes occur to the system. Therefore, this research intends to develop a decision support tool (DST) based on promising artificial intelligent that is able to accommodate the dynamics that regularly occur in job shop scheduling problem. The DST was designed through three phases, i.e. (i) the look-up table generation, (ii) inverse model development and (iii) integration of DST components. This paper reports the generation of look-up tables for various scenarios as a part in development of the DST. A discrete event simulation model was used to compare the performance among SPT, EDD, FCFS, S/OPN and Slack rules; the best performances measures (mean flow time, mean tardiness and mean lateness) and the job order requirement (inter-arrival time, due dates tightness and setup time ratio) which were compiled into look-up tables. The well-known 6/6/J/Cmax Problem from Muth and Thompson (1963) was used as a case study. In the future, the performance measure of various scheduling scenarios and the job order requirement will be mapped using ANN inverse model.

  4. Generation of random microstructures and prediction of sound velocity and absorption for open foams with spherical pores.

    PubMed

    Zieliński, Tomasz G

    2015-04-01

    This paper proposes and discusses an approach for the design and quality inspection of the morphology dedicated for sound absorbing foams, using a relatively simple technique for a random generation of periodic microstructures representative for open-cell foams with spherical pores. The design is controlled by a few parameters, namely, the total open porosity and the average pore size, as well as the standard deviation of pore size. These design parameters are set up exactly and independently, however, the setting of the standard deviation of pore sizes requires some number of pores in the representative volume element (RVE); this number is a procedure parameter. Another pore structure parameter which may be indirectly affected is the average size of windows linking the pores, however, it is in fact weakly controlled by the maximal pore-penetration factor, and moreover, it depends on the porosity and pore size. The proposed methodology for testing microstructure-designs of sound absorbing porous media applies the multi-scale modeling where some important transport parameters-responsible for sound propagation in a porous medium-are calculated from microstructure using the generated RVE, in order to estimate the sound velocity and absorption of such a designed material. PMID:25920832

  5. Advanced real-time dynamic scene generation techniques for improved performance and fidelity

    NASA Astrophysics Data System (ADS)

    Bowden, Mark H.; Buford, James A.; Mayhall, Anthony J.

    2000-07-01

    Recent advances in real-time synthetic scene generation for Hardware-in-the-loop (HWIL) testing at the U.S. Army Aviation and Missile Command (AMCOM) Aviation and Missile Research, Development, and Engineering Center (AMRDEC) improve both performance and fidelity. Modeling ground target scenarios requires tradeoffs because of limited texture memory for imagery and limited main memory for elevation data. High- resolution insets have been used in the past to provide better fidelity in specific areas, such as in the neighborhood of a target. Improvements for ground scenarios include smooth transitions for high-resolution insets to reduce high spatial frequency artifacts at the borders of the inset regions and dynamic terrain paging to support large area databases. Transport lag through the scene generation system, including sensor emulation and interface components, has been dealt with in the past through the use of sub-window extraction from oversize scenes. This compensates for spatial effects of transport lag but not temporal effects. A new system has been developed and used successfully to compensate for a flashing coded beacon in the scene. Other techniques have been developed to synchronize the scene generator with the seeker under test (SUT) and to model atmospheric effects, sensor optic and electronics, and angular emissivity attenuation.

  6. Effect of indoor-generated airborne particles on radon progeny dynamics.

    PubMed

    Trassierra, C Vargas; Stabile, L; Cardellini, F; Morawska, L; Buonanno, G

    2016-08-15

    In order to investigate the interaction between radon progeny and particles, an experimental campaign was carried out in a radon chamber at the Italian National Institute of Ionizing Radiation Metrology, quantifying the amount of attached and unattached radon daughters present in air, as well as the equilibrium factor in the presence of particles generated through indoor sources. A fixed radon concentration was maintained, while particles were generated using incense sticks, mosquito coils and gas combustion. Aerosols were characterized in terms of particle concentrations and size distributions. Simultaneously, radon concentration and attached/unattached potential alpha energy concentration in the air were continuously monitored by two different devices, based on alpha spectroscopy techniques. The presence of particles was found to affect the attached fraction of radon decay products, in such a way that the particles acted as a sink for radionuclides. In terms of sources which emit large particles (e.g. incense, mosquito coils), which greatly increase particle surface area concentrations, the Equilibrium Factor was found to double with respect to the background level before particle generation sessions. On the contrary, the radon decay product dynamics were not influenced by gas combustion processes, mainly due to the small surface area of the particles emitted. PMID:27131455

  7. Zeeman splitting and dynamical mass generation in Dirac semimetal ZrTe5.

    PubMed

    Liu, Yanwen; Yuan, Xiang; Zhang, Cheng; Jin, Zhao; Narayan, Awadhesh; Luo, Chen; Chen, Zhigang; Yang, Lei; Zou, Jin; Wu, Xing; Sanvito, Stefano; Xia, Zhengcai; Li, Liang; Wang, Zhong; Xiu, Faxian

    2016-01-01

    Dirac semimetals have attracted extensive attentions in recent years. It has been theoretically suggested that many-body interactions may drive exotic phase transitions, spontaneously generating a Dirac mass for the nominally massless Dirac electrons. So far, signature of interaction-driven transition has been lacking. In this work, we report high-magnetic-field transport measurements of the Dirac semimetal candidate ZrTe5. Owing to the large g factor in ZrTe5, the Zeeman splitting can be observed at magnetic field as low as 3 T. Most prominently, high pulsed magnetic field up to 60 T drives the system into the ultra-quantum limit, where we observe abrupt changes in the magnetoresistance, indicating field-induced phase transitions. This is interpreted as an interaction-induced spontaneous mass generation of the Dirac fermions, which bears resemblance to the dynamical mass generation of nucleons in high-energy physics. Our work establishes Dirac semimetals as ideal platforms for investigating emerging correlation effects in topological matters. PMID:27515493

  8. Zeeman splitting and dynamical mass generation in Dirac semimetal ZrTe5

    PubMed Central

    Liu, Yanwen; Yuan, Xiang; Zhang, Cheng; Jin, Zhao; Narayan, Awadhesh; Luo, Chen; Chen, Zhigang; Yang, Lei; Zou, Jin; Wu, Xing; Sanvito, Stefano; Xia, Zhengcai; Li, Liang; Wang, Zhong; Xiu, Faxian

    2016-01-01

    Dirac semimetals have attracted extensive attentions in recent years. It has been theoretically suggested that many-body interactions may drive exotic phase transitions, spontaneously generating a Dirac mass for the nominally massless Dirac electrons. So far, signature of interaction-driven transition has been lacking. In this work, we report high-magnetic-field transport measurements of the Dirac semimetal candidate ZrTe5. Owing to the large g factor in ZrTe5, the Zeeman splitting can be observed at magnetic field as low as 3 T. Most prominently, high pulsed magnetic field up to 60 T drives the system into the ultra-quantum limit, where we observe abrupt changes in the magnetoresistance, indicating field-induced phase transitions. This is interpreted as an interaction-induced spontaneous mass generation of the Dirac fermions, which bears resemblance to the dynamical mass generation of nucleons in high-energy physics. Our work establishes Dirac semimetals as ideal platforms for investigating emerging correlation effects in topological matters. PMID:27515493

  9. Dynamics of Adaptation and Diversification: A 10,000-Generation Experiment with Bacterial Populations

    NASA Astrophysics Data System (ADS)

    Lenski, Richard E.; Travisano, Michael

    1994-07-01

    We followed evolutionary change in 12 populations of Escherichia coli propagated for 10,000 generations in identical environments. Both morphology (cell size) and fitness (measured in competition with the ancestor) evolved rapidly for the first 2000 generations or so after the populations were introduced into the experimental environment, but both were nearly static for the last 5000 generations. Although evolving in identical environments, the replicate populations diverged significantly from one another in both morphology and mean fitness. The divergence in mean fitness was sustained and implies that the populations have approached different fitness peaks of unequal height in the adaptive landscape. Although the experimental time scale and environment were microevolutionary in scope, our experiments were designed to address questions concerning the origin as well as the fate of genetic and phenotypic novelties, the repeatability of adaptation, the diversification of lineages, and thus the causes and consequences of the uniqueness of evolutionary history. In fact, we observed several hallmarks of macroevolutionary dynamics, including periods of rapid evolution and stasis, altered functional relationships between traits, and concordance of anagenetic and cladogenetic trends. Our results support a Wrightian interpretation, in which chance events (mutation and drift) play an important role in adaptive evolution, as do the complex genetic interactions that underlie the structure of organisms.

  10. Effects of Student-Generated Diagrams versus Student-Generated Summaries on Conceptual Understanding of Causal and Dynamic Knowledge in Plate Tectonics.

    ERIC Educational Resources Information Center

    Gobert, Janice D.; Clement, John J.

    1999-01-01

    Grade five students' (n=58) conceptual understanding of plate tectonics was measured by analysis of student-generated summaries and diagrams, and by posttest assessment of both the spatial/static and causal/dynamic aspects of the domain. The diagram group outperformed the summary and text-only groups on the posttest measures. Discusses the effects…

  11. Dynamics of the plasma injected into the gap of a plasma opening switch across a strong magnetic field

    SciTech Connect

    Dolgachev, G. I.; Maslennikov, D. D.; Ushakov, A. G.; Fedotkin, A. S.; Khodeev, I. A.; Shvedov, A. A.

    2011-02-15

    A method is proposed to increase the linear charge density transferred through a plasma opening switch (POS) and, accordingly, reduce the POS diameter by enhancing the external magnetic field in the POS gap. Results are presented from experimental studies of the dynamics of the plasma injected into the POS gap across a strong magnetic field. The possibility of closing the POS gap by the plasma injected across an external magnetic field of up to 60 kG is demonstrated.

  12. An Investigation of Water Loss Mechanisms and the Significance of Open Taliks in the Hydrologic Dynamics of Thermokarst Ponds

    NASA Astrophysics Data System (ADS)

    Fraver, M. R.; Hinzman, L.; Yoshikawa, K.; Kane, D.

    2002-12-01

    Preliminary analyses have revealed that many ponds near Council, Alaska on the Seward Peninsula are shrinking when compared with aerial photographs taken over the last 50 years. It is important to investigate the cause of this change to determine if this could be a broad scale result of a changing climate. To better understand the loss mechanisms controlling water level dynamics in these ponds, a water balance is being conducted at a unique study site outside of Council, AK. The site encompasses two thermokarst ponds and a network of channels and marshy areas connecting the two ponds. From DC electrical sounding and permafrost boring data, the discontinuous permafrost in the area is typically 20 to 60 meters thick. The downward migration of water through open taliks in the permafrost is suspected to play a significant role in thermokarst pond dynamics by creating an additional water loss mechanism and thereby contributing to the total water loss rate. The first field season yielded data indicating a significant downward hydraulic gradient beneath one of the two ponds, revealing the presence of an open talik. The significance of the loss mechanism created by the open talik relative to water losses through the marshy channels, evaporation at the pond surface, and evapotranspiration from the encroaching floating mat is being quantified. While it is understood that precipitation is the dominant factor influencing water level dynamics in northern wetlands, a newly formed open talik would result in the addition of a perennially active loss mechanism and could potentially affect water level dynamics dramatically. This extra loss mechanism, if significant, would increase the total loss rate and result in greater water level fluctuations in the pond between recharge periods. Consistently lower water levels will allow for changes in vegetation and other surface conditions and facilitate succession from pond to marsh, evident by noticeably smaller ponds over time.

  13. Improvement of dem Generation from Aster Images Using Satellite Jitter Estimation and Open Source Implementation

    NASA Astrophysics Data System (ADS)

    Girod, L.; Nuth, C.; Kääb, A.

    2015-12-01

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) system embarked on the Terra (EOS AM-1) satellite has been a source of stereoscopic images covering the whole globe at a 15m resolution at a consistent quality for over 15 years. The potential of this data in terms of geomorphological analysis and change detection in three dimensions is unrivaled and needs to be exploited. However, the quality of the DEMs and ortho-images currently delivered by NASA (ASTER DMO products) is often of insufficient quality for a number of applications such as mountain glacier mass balance. For this study, the use of Ground Control Points (GCPs) or of other ground truth was rejected due to the global "big data" type of processing that we hope to perform on the ASTER archive. We have therefore developed a tool to compute Rational Polynomial Coefficient (RPC) models from the ASTER metadata and a method improving the quality of the matching by identifying and correcting jitter induced cross-track parallax errors. Our method outputs more accurate DEMs with less unmatched areas and reduced overall noise. The algorithms were implemented in the open source photogrammetric library and software suite MicMac.

  14. Experimental and analytical investigation of acoustic streaming generated by standing ultrasonic waves in an open boundaries

    NASA Astrophysics Data System (ADS)

    Kwon, K.; Loh, B.-G.; Lee, D.-R.

    2007-12-01

    Acoustic streaming patterns, velocity fields, which is induced by a cylindrical ultrasonic exciter vibrating at 28.4kHz in an open physical boundaries, is analytically and experimentally investigated using Particle Imaging Velocimetry (PIV). Induced acoustic streaming patterns and velocity fields for the gaps of 18mm at which the irrotational tangential velocity becomes a maximum, resulting in a substantial increase in the acoustic streaming velocity and pronounced visualization of streaming patterns between the vibrator and quiescent glass plate are presented. The overall air flow patterns at the gaps of 24, 30, 36mm are similar to the gap of 18 mm but as the gap increases the frequency of occurrence and irregularity of vortices in the gap appear to increase. The symmetric definite steady circular flow with local vortices is observed. The maximum streaming velocity measured stands at 0.16 cm/s with a vibration amplitude of 50 micrometers. Theoretical analysis indicates that the pattern of air flow in the gap is determined by the top and bottom limiting velocities induced by acoustic streaming within the Stokes boundary layer and that the streaming pattern is symmetrical with respect to the center axis of the vibrator by reason of symmetry. The comparison between the experimental data and the theoretical estimation based on Nyborg and Jackson is performed.

  15. Open air biocathode enables effective electricity generation with microbial fuel cells.

    PubMed

    Clauwaert, Peter; Van der Ha, David; Boon, Nico; Verbeken, Kim; Verhaege, Marc; Rabaey, Korneel; Verstraete, Willy

    2007-11-01

    The reduction of oxygen at the cathode is one of the major bottlenecks of microbial fuel cells (MFCs). While research so far has mainly focused on chemical catalysis of this oxygen reduction, here we present a continuously wetted cathode with microorganisms that act as biocatalysts for oxygen reduction. We combined the anode of an acetate oxidizing tubular microbial fuel cell with an open air biocathode for electricity production. The maximum power production was 83 +/- 11 W m(-3) MFC (0.183 L MFC) for batch-fed systems (20-40% Coulombic yield) and 65 +/- 5 W m(-3) MFC for a continuous system with an acetate loading rate of 1.5 kg COD m(-3) day(-1) (90 +/- 3% Coulombic yield). Electrochemical precipitation of manganese oxides on the cathodic graphite felt decreased the start-up period with approximately 30% versus a non-treated graphite felt. After the start-up period, the cell performance was similar for the pretreated and non-treated cathodic electrodes. Several reactor designs were tested, and it was found that enlargement of the 0.183 L MFC reactor by a factor 2.9-3.8 reduced the volumetric power output by 60-67%. Biocathodes alleviate the need to use noble or non-noble catalysts for the reduction of oxygen, which increases substantially the viability and sustainability of MFCs. PMID:18044542

  16. Collaboration-Centred Cities through Urban Apps Based on Open and User-Generated Data.

    PubMed

    Aguilera, Unai; López-de-Ipiña, Diego; Pérez, Jorge

    2016-01-01

    This paper describes the IES Cities platform conceived to streamline the development of urban apps that combine heterogeneous datasets provided by diverse entities, namely, government, citizens, sensor infrastructure and other information data sources. This work pursues the challenge of achieving effective citizen collaboration by empowering them to prosume urban data across time. Particularly, this paper focuses on the query mapper; a key component of the IES Cities platform devised to democratize the development of open data-based mobile urban apps. This component allows developers not only to use available data, but also to contribute to existing datasets with the execution of SQL sentences. In addition, the component allows developers to create ad hoc storages for their applications, publishable as new datasets accessible by other consumers. As multiple users could be contributing and using a dataset, our solution also provides a data level permission mechanism to control how the platform manages the access to its datasets. We have evaluated the advantages brought forward by IES Cities from the developers' perspective by describing an exemplary urban app created on top of it. In addition, we include an evaluation of the main functionalities of the query mapper. PMID:27376300

  17. Collaboration-Centred Cities through Urban Apps Based on Open and User-Generated Data

    PubMed Central

    Aguilera, Unai; López-de-Ipiña, Diego; Pérez, Jorge

    2016-01-01

    This paper describes the IES Cities platform conceived to streamline the development of urban apps that combine heterogeneous datasets provided by diverse entities, namely, government, citizens, sensor infrastructure and other information data sources. This work pursues the challenge of achieving effective citizen collaboration by empowering them to prosume urban data across time. Particularly, this paper focuses on the query mapper; a key component of the IES Cities platform devised to democratize the development of open data-based mobile urban apps. This component allows developers not only to use available data, but also to contribute to existing datasets with the execution of SQL sentences. In addition, the component allows developers to create ad hoc storages for their applications, publishable as new datasets accessible by other consumers. As multiple users could be contributing and using a dataset, our solution also provides a data level permission mechanism to control how the platform manages the access to its datasets. We have evaluated the advantages brought forward by IES Cities from the developers’ perspective by describing an exemplary urban app created on top of it. In addition, we include an evaluation of the main functionalities of the query mapper. PMID:27376300

  18. Some aspects of two-phase flow, heat transfer and dynamic instabilities in medium and high pressure steam generators

    NASA Astrophysics Data System (ADS)

    Unal, H. C.

    1981-03-01

    Experimental data for void fraction, incipient point of boiling, initial point of net vapor generation, bubble dynamics, dryout, two-phase flow pressure drop and density-wave oscillations were obtained in long, sodium heated steam generator tubes of different geometries for a wide range of operating conditions and at medium and high pressures. These data and data from literature taken in sodium and electrically heated steam generator tubes were correlated. Aspects of two-phase flow, heat transfer and density-wave oscillations in these steam generators disclosed include the distribution factor in small- and medium-size diameter steam generator tubes, the characteristic of the transitions at the incipient point of boiling and initial point of net vapor generation, bubble growth during subcooled nucleate flow boiling, the importance of the equivalent length for dryout in non-uniformly heated steam generator tubes and the mechanisms of density-wave oscillations in once-through steam generator tubes.

  19. Sequence-Specific Protein Aggregation Generates Defined Protein Knockdowns in Plants1[OPEN

    PubMed Central

    Vuylsteke, Marnik; Aesaert, Stijn; Rombaut, Debbie; De Smet, Frederik; Xu, Jie; Van Lijsebettens, Mieke; Rousseau, Frederic

    2016-01-01

    Protein aggregation is determined by short (5–15 amino acids) aggregation-prone regions (APRs) of the polypeptide sequence that self-associate in a specific manner to form β-structured inclusions. Here, we demonstrate that the sequence specificity of APRs can be exploited to selectively knock down proteins with different localization and function in plants. Synthetic aggregation-prone peptides derived from the APRs of either the negative regulators of the brassinosteroid (BR) signaling, the glycogen synthase kinase 3/Arabidopsis SHAGGY-like kinases (GSK3/ASKs), or the starch-degrading enzyme α-glucan water dikinase were designed. Stable expression of the APRs in Arabidopsis (Arabidopsis thaliana) and maize (Zea mays) induced aggregation of the target proteins, giving rise to plants displaying constitutive BR responses and increased starch content, respectively. Overall, we show that the sequence specificity of APRs can be harnessed to generate aggregation-associated phenotypes in a targeted manner in different subcellular compartments. This study points toward the potential application of induced targeted aggregation as a useful tool to knock down protein functions in plants and, especially, to generate beneficial traits in crops. PMID:27208282

  20. A methodology for generating dynamic accident progression event trees for level-2 PRA

    SciTech Connect

    Hakobyan, A.; Denning, R.; Aldemir, T.; Dunagan, S.; Kunsman, D.

    2006-07-01

    Currently, the development and analysis of Accident Progression Event Trees (APETs) are performed in a manner that is computationally time consuming, difficult to reproduce and also can be phenomenologically inconsistent. A software tool (ADAPT) is described for automated APET generation using the concept of dynamic event trees. The tool determines the branching times from a severe accident analysis code based on user specified criteria for branching. It assigns user specified probabilities to every branch, tracks the total branch probability, and truncates branches based on the given pruning/truncation rules to avoid an unmanageable number of scenarios. While the software tool could be applied to any systems analysis code, the MELCOR code is used for this illustration. A case study is presented involving station blackout with the loss of auxiliary feedwater system for a pressurized water reactor. (authors)

  1. The default network and self-generated thought: component processes, dynamic control, and clinical relevance

    PubMed Central

    Andrews-Hanna, Jessica R.; Smallwood, Jonathan; Spreng, R. Nathan

    2014-01-01

    Though only a decade has elapsed since the default network was first emphasized as being a large-scale brain system, recent years have brought great insight into the network’s adaptive functions. A growing theme highlights the default network as playing a key role in internally-directed—or self-generated—thought. Here, we synthesize recent findings from cognitive science, neuroscience, and clinical psychology to focus attention on two emerging topics as current and future directions surrounding the default network. First, we present evidence that self-generated thought is a multi-faceted construct whose component processes are supported by different subsystems within the network. Second, we highlight the dynamic nature of the default network, emphasizing its interaction with executive control systems when regulating aspects of internal thought. We conclude by discussing clinical implications of disruptions to the integrity of the network, and consider disorders when thought content becomes polarized or network interactions become disrupted or imbalanced. PMID:24502540

  2. Dynamical generation of a nontrivial index on the fuzzy 2-sphere

    SciTech Connect

    Aoki, Hajime; Iso, Satoshi; Nagao, Keiichi; Maeda, Toshiharu

    2005-02-15

    In the previous paper [H. Aoki, S. Iso, and K. Nagao, Nucl. Phys. B 684, 162 (2004)] we studied the 't Hooft-Polyakov (TP) monopole configuration in the U(2) gauge theory on the fuzzy 2-sphere and showed that it has a nonzero topological charge in the formalism based on the Ginsparg-Wilson relation. In this paper, by showing that the TP monopole configuration is stabler than the U(2) gauge theory without any condensation in the Yang-Mills-Chern-Simons matrix model, we will present a mechanism for dynamical generation of a nontrivial index. We further analyze the instability and decay processes of the U(2) gauge theory and the TP monopole configuration.

  3. Dynamic modification of the fragmentation of COq+ excited states generated with high-order harmonics

    NASA Astrophysics Data System (ADS)

    Cao, W.; de, S.; Singh, K. P.; Chen, S.; Schöffler, M. S.; Alnaser, A. S.; Bocharova, I. A.; Laurent, G.; Ray, D.; Zherebtsov, S.; Kling, M. F.; Ben-Itzhak, I.; Litvinyuk, I. V.; Belkacem, A.; Osipov, T.; Rescigno, T.; Cocke, C. L.

    2010-10-01

    The dynamic process of fragmentation of COq+ excited states is investigated using a pump-probe approach. EUV radiation (32-48 eV) generated by high-order harmonics was used to ionize and excite CO molecules and a time-delayed infrared (IR) pulse (800 nm) was used to influence the evolution of the dissociating multichannel wave packet. Two groups of states, separable experimentally by their kinetic-energy release (KER), are populated by the EUV and lead to C+-O+ fragmentation: direct double ionization of the neutral molecule and fragmentation of the cation leading to C+-O*, followed by autoionization of O*. The IR pulse was found to modify the KER of the latter group in a delay-dependent way which is explained with a model calculation.

  4. Influence of an Internally-Generated QBO on Modeled Stratospheric Dynamics and Ozone

    NASA Technical Reports Server (NTRS)

    Hurwitz, M. M.; Newman, P. A.; Song, I. S.

    2011-01-01

    A GEOS V2 CCM simulation with an internally generated quasi-biennial oscillation (QBO) signal is compared to an otherwise identical simulation without a QBO. In a present-day climate, inclusion of the modeled QBO makes a significant difference to stratospheric dynamics and ozone throughout the year. The QBO enhances variability in the tropics, as expected, but also in the polar stratosphere in some seasons. The modeled QBO also affects the mean stratospheric climate. Because tropical zonal winds in the baseline simulation are generally easterly, there is a relative increase in zonal wind magnitudes in tropical lower and middle stratosphere in the QBO simulation. Extra-tropical differences between the QBO and 'no QBO' simulations thus reflect a bias toward the westerly phase of the QBO: a relative strengthening and poleward shifting the polar stratospheric jets, and a reduction in Arctic lower stratospheric ozone.

  5. The experimenters' regress reconsidered: Replication, tacit knowledge, and the dynamics of knowledge generation.

    PubMed

    Feest, Uljana

    2016-08-01

    This paper revisits the debate between Harry Collins and Allan Franklin, concerning the experimenters' regress. Focusing my attention on a case study from recent psychology (regarding experimental evidence for the existence of a Mozart Effect), I argue that Franklin is right to highlight the role of epistemological strategies in scientific practice, but that his account does not sufficiently appreciate Collins's point about the importance of tacit knowledge in experimental practice. In turn, Collins rightly highlights the epistemic uncertainty (and skepticism) surrounding much experimental research. However, I will argue that his analysis of tacit knowledge fails to elucidate the reasons why scientists often are (and should be) skeptical of other researchers' experimental results. I will present an analysis of tacit knowledge in experimental research that not only answers to this desideratum, but also shows how such skepticism can in fact be a vital enabling factor for the dynamic processes of experimental knowledge generation. PMID:27474184

  6. Molecular dynamics study of two-dimensional sum frequency generation spectra at vapor/water interface

    SciTech Connect

    Ishiyama, Tatsuya; Morita, Akihiro; Tahara, Tahei

    2015-06-07

    Two-dimensional heterodyne-detected vibrational sum frequency generation (2D HD-VSFG) spectra at vapor/water interface were studied by molecular dynamics (MD) simulation with a classical flexible and nonpolarizable model. The present model well describes the spectral diffusion of 2D infrared spectrum of bulk water as well as 2D HD-VSFG at the interface. The effect of isotopic dilution on the 2D HD-VSFG was elucidated by comparing the normal (H{sub 2}O) water and HOD water. We further performed decomposition analysis of 2D HD-VSFG into the hydrogen-bonding and the dangling (or free) OH vibrations, and thereby disentangled the different spectral responses and spectral diffusion in the 2D HD-VSFG. The present MD simulation demonstrated the role of anharmonic coupling between these modes on the cross peak in the 2D HD-VSFG spectrum.

  7. Nutrient and plankton dynamics in an intermittently closed/open lagoon, Smiths Lake, south-eastern Australia: An ecological model

    NASA Astrophysics Data System (ADS)

    Everett, Jason D.; Baird, Mark E.; Suthers, Iain M.

    2007-05-01

    A spatially resolved, eleven-box ecological model is presented for an Intermittently Closed and Open Lake or Lagoon (ICOLL), configured for Smiths Lake, NSW Australia. ICOLLs are characterised by low flow from the catchment and a dynamic sand bar blocking oceanic exchange, which creates two distinct phases - open and closed. The process descriptions in the ecological model are based on a combination of physical and physiological limits to the processes of nutrient uptake, light capture by phytoplankton and predator-prey interactions. An inverse model is used to calculate mixing coefficients from salinity observations. When compared to field data, the ecological model obtains a fit for salinity, nitrogen, phosphorus, chlorophyll a and zooplankton which is within 1.5 standard deviations of the mean of the field data. Simulations show that nutrient limitation (nitrogen and phosphorus) is the dominant factor limiting growth of the autotrophic state variables during both the open and closed phases of the lake. The model is characterised by strong oscillations in phytoplankton and zooplankton abundance, typical of predator-prey cycles. There is an increase in the productivity of phytoplankton and zooplankton during the open phase. This increased productivity is exported out of the lagoon with a net nitrogen export from water column variables of 489 and 2012 mol N d -1 during the two studied openings. The model is found to be most sensitive to the mortality and feeding efficiency of zooplankton.

  8. Role of H2O2 dynamics in brassinosteroid-induced stomatal closure and opening in Solanum lycopersicum.

    PubMed

    Xia, Xiao-Jian; Gao, Chun-Juan; Song, Liu-Xia; Zhou, Yan-Hong; Shi, Kai; Yu, Jing-Quan

    2014-09-01

    Brassinosteroids (BRs) are essential for plant growth and development; however, their roles in the regulation of stomatal opening or closure remain obscure. Here, the mechanism underlying BR-induced stomatal movements is studied. The effects of 24-epibrassinolide (EBR) on the stomatal apertures of tomato (Solanum lycopersicum) were measured by light microscopy using epidermal strips of wild type (WT), the abscisic acid (ABA)-deficient notabilis (not) mutant, and plants silenced for SlBRI1, SlRBOH1 and SlGSH1. EBR induced stomatal opening within an appropriate range of concentrations, whereas high concentrations of EBR induced stomatal closure. EBR-induced stomatal movements were closely related to dynamic changes in H(2)O(2) and redox status in guard cells. The stomata of SlRBOH1-silenced plants showed a significant loss of sensitivity to EBR. However, ABA deficiency abolished EBR-induced stomatal closure but did not affect EBR-induced stomatal opening. Silencing of SlGSH1, the critical gene involved in glutathione biosynthesis, disrupted glutathione redox homeostasis and abolished EBR-induced stomatal opening. The results suggest that transient H(2)O(2) production is essential for poising the cellular redox status of glutathione, which plays an important role in BR-induced stomatal opening. However, a prolonged increase in H(2)O(2) facilitated ABA signalling and stomatal closure. PMID:24428600

  9. Lower extremity control and dynamics during backward angular impulse generation in forward translating tasks.

    PubMed

    Mathiyakom, W; McNitt-Gray, J L; Wilcox, R

    2006-01-01

    Observation of complex whole body movements suggests that the nervous system coordinates multiple operational subsystems using some type of hierarchical control. When comparing two forward translating tasks performed with and without backward angular impulse, we have learned that both trunk-leg coordination and reaction force-time characteristics are significantly different between tasks. This led us to hypothesize that differences in trunk-leg coordination and reaction force generation would induce between-task differences in the control of the lower extremity joints during impulse generation phase of the tasks. Eight highly skilled performers executed a series of forward jumps with and without backward rotation (reverse somersault and reverse timer, respectively). Sagittal plane kinematics, reaction forces, and electromyograms of lower extremity muscles were acquired during the take-off phase of both tasks. Lower extremity joint kinetics were calculated using inverse dynamics. The results demonstrated between-task differences in the relative angles between the lower extremity segments and the net joint forces/reaction force and the joint angular velocity profiles. Significantly less knee extensor net joint moments and net joint moment work and greater hip extensor net joint moments and net joint moment work were observed during the push interval of the reverse somersault as compared to the reverse timer. Between-task differences in lower extremity joint kinetics were regulated by selectively activating the bi-articular muscles crossing the knee and hip. These results indicate that between-task differences in the control of the center of mass relative to the reaction force alters control and dynamics of the multijoint lower extremity subsystem. PMID:15878165

  10. Evaporation and discharge dynamics of highly charged multicomponent droplets generated by electrospray ionization.

    PubMed

    Grimm, Ronald L; Beauchamp, J L

    2010-01-28

    We investigate the Rayleigh discharge and evaporation dynamics of highly charged two-component droplets consisting principally of methanol with 2-methoxyethanol, tert-butanol, or m-nitrobenzyl alcohol. A phase Doppler anemometer (PDA) characterizes droplets generated by electrospray ionization (ESI) according to size, velocity, and charge as they move through a uniform electric field within an ion mobility spectrometer (IMS). Repeated field reversals result in droplet "ping-pong" through the PDA. This generates individual droplet histories of solvent evaporation behavior and the dynamics of charge loss to progeny droplets during Rayleigh discharge events. On average, methanol droplets discharge at 127% their Rayleigh limit of charge, q(R), and release 25% of the net charge. Charge loss from methanol/2-methoxyethanol droplets behaves similarly to pure 2-methoxyethanol droplets which release approximately 28% of their net charge. Binary methanol droplets containing up to 50% tert-butanol discharge at a lower percent q(R) than pure methanol and release a greater fraction of their net charge. Mixed 99% methanol/1% m-nitrobenzyl alcohol droplets possess discharge characteristics similar to those of methanol. However, droplets of methanol containing 2% m-nitrobenzyl evaporate down to a fixed size and charge that remains constant with no observable discharges. Quasi-steady-state evaporation models accurately describe observed evaporation phenomena in which methanol/tert-butanol droplets evaporate at a rate similar to that of pure methanol and methanol/2-methoxyethanol droplets evaporate at a rate similar to that of 2-methoxyethanol. We compare these results to previous Rayleigh discharge experiments and discuss the implications for binary solvents in electrospray mass spectrometry (ESI-MS) and field-induced droplet ionization mass spectrometry (FIDI-MS). PMID:19848399

  11. New numerical methods for open-loop and feedback solutions to dynamic optimization problems

    NASA Astrophysics Data System (ADS)

    Ghosh, Pradipto

    The topic of the first part of this research is trajectory optimization of dynamical systems via computational swarm intelligence. Particle swarm optimization is a nature-inspired heuristic search method that relies on a group of potential solutions to explore the fitness landscape. Conceptually, each particle in the swarm uses its own memory as well as the knowledge accumulated by the entire swarm to iteratively converge on an optimal or near-optimal solution. It is relatively straightforward to implement and unlike gradient-based solvers, does not require an initial guess or continuity in the problem definition. Although particle swarm optimization has been successfully employed in solving static optimization problems, its application in dynamic optimization, as posed in optimal control theory, is still relatively new. In the first half of this thesis particle swarm optimization is used to generate near-optimal solutions to several nontrivial trajectory optimization problems including thrust programming for minimum fuel, multi-burn spacecraft orbit transfer, and computing minimum-time rest-to-rest trajectories for a robotic manipulator. A distinct feature of the particle swarm optimization implementation in this work is the runtime selection of the optimal solution structure. Optimal trajectories are generated by solving instances of constrained nonlinear mixed-integer programming problems with the swarming technique. For each solved optimal programming problem, the particle swarm optimization result is compared with a nearly exact solution found via a direct method using nonlinear programming. Numerical experiments indicate that swarm search can locate solutions to very great accuracy. The second half of this research develops a new extremal-field approach for synthesizing nearly optimal feedback controllers for optimal control and two-player pursuit-evasion games described by general nonlinear differential equations. A notable revelation from this development

  12. Automatic Stress Testing of Multi-tier Systems by Dynamic Bottleneck Switch Generation

    NASA Astrophysics Data System (ADS)

    Casale, Giuliano; Kalbasi, Amir; Krishnamurthy, Diwakar; Rolia, Jerry

    The performance of multi-tier systems is known to be significantly degraded by workloads that place bursty service demands on system resources. Burstiness can cause queueing delays, oversubscribe limited threading resources, and even cause dynamic bottleneck switches between resources. Thus, there is need for a methodology to create benchmarks with controlled burstiness and bottleneck switches to evaluate their impact on system performance. We tackle this problem using a model-based technique for the automatic and controlled generation of bursty benchmarks. Markov models are constructed in an automated manner to model the distribution of service demands placed by sessions of a given system on various system resources. The models are then used to derive session submission policies that result in user-specified levels of service demand burstiness for resources at the different tiers in a system. Our approach can also predict under what conditions these policies can create dynamic bottleneck switching among resources. A case study using a three-tier TPC-W testbed shows that our method is able to control and predict burstiness for session service demands. Further, results from the study demonstrate that our approach was able to inject controlled bottleneck switches. Experiments show that these bottleneck switches cause dramatic latency and throughput degradations that are not shown by the same session mix with non-bursty conditions.

  13. A Theory of Dynamic Imaging of Coherent Molecular Rotations by High Harmonic Generation

    NASA Astrophysics Data System (ADS)

    Faisal, F. H. M.; Abdurrouf, A.

    A dynamic theory of mapping coherent molecular motions from high harmonic generation signals is presented. Application to mapping of coherent rotational motions of linear molecules is made. Results of concrete calculations for N2, O2 and CO2 are analyzed both in time and frequency domains. A "magic angle" for the polarization geometry is predicted at which the HHG signals for all pump-probe delay times become equal for linear molecules of σg orbital symmetry. In contrast only a "crossing neighborhood" near the magic angle is predicted for molecules with orbitals of π symmetry. They are expected to help in identifying the orbital symmetry in the inverse problem of orbital reconstruction from experimental data. Comparison with available experimental data show remarkable agreement with all the salient properties of dynamic HHG signals of linear diatomic molecules, N2 and O2, and some simple organic molecules. Additional results for the triatomic molecule CO2 are discussed that might help to test the theory further.

  14. ADEPT, a dynamic next generation sequencing data error-detection program with trimming

    DOE PAGESBeta

    Feng, Shihai; Lo, Chien-Chi; Li, Po-E; Chain, Patrick S. G.

    2016-02-29

    Illumina is the most widely used next generation sequencing technology and produces millions of short reads that contain errors. These sequencing errors constitute a major problem in applications such as de novo genome assembly, metagenomics analysis and single nucleotide polymorphism discovery. In this study, we present ADEPT, a dynamic error detection method, based on the quality scores of each nucleotide and its neighboring nucleotides, together with their positions within the read and compares this to the position-specific quality score distribution of all bases within the sequencing run. This method greatly improves upon other available methods in terms of the truemore » positive rate of error discovery without affecting the false positive rate, particularly within the middle of reads. We conclude that ADEPT is the only tool to date that dynamically assesses errors within reads by comparing position-specific and neighboring base quality scores with the distribution of quality scores for the dataset being analyzed. The result is a method that is less prone to position-dependent under-prediction, which is one of the most prominent issues in error prediction. The outcome is that ADEPT improves upon prior efforts in identifying true errors, primarily within the middle of reads, while reducing the false positive rate.« less

  15. Generation of Red-Shifted Cameleons for Imaging Ca2+ Dynamics of the Endoplasmic Reticulum

    PubMed Central

    Waldeck-Weiermair, Markus; Bischof, Helmut; Blass, Sandra; Deak, Andras T.; Klec, Christiane; Graier, Thomas; Roller, Clara; Rost, Rene; Eroglu, Emrah; Gottschalk, Benjamin; Hofmann, Nicole A.; Graier, Wolfgang F.; Malli, Roland

    2015-01-01

    Cameleons are sophisticated genetically encoded fluorescent probes that allow quantifying cellular Ca2+ signals. The probes are based on Förster resonance energy transfer (FRET) between terminally located fluorescent proteins (FPs), which move together upon binding of Ca2+ to the central calmodulin myosin light chain kinase M13 domain. Most of the available cameleons consist of cyan and yellow FPs (CFP and YFP) as the FRET pair. However, red-shifted versions with green and orange or red FPs (GFP, OFP, RFP) have some advantages such as less phototoxicity and minimal spectral overlay with autofluorescence of cells and fura-2, a prominent chemical Ca2+ indicator. While GFP/OFP- or GFP/RFP-based cameleons have been successfully used to study cytosolic and mitochondrial Ca2+ signals, red-shifted cameleons to visualize Ca2+ dynamics of the endoplasmic reticulum (ER) have not been developed so far. In this study, we generated and tested several ER targeted red-shifted cameleons. Our results show that GFP/OFP-based cameleons due to miss-targeting and their high Ca2+ binding affinity are inappropriate to record ER Ca2+ signals. However, ER targeted GFP/RFP-based probes were suitable to sense ER Ca2+ in a reliable manner. With this study we increased the palette of cameleons for visualizing Ca2+ dynamics within the main intracellular Ca2+ store. PMID:26053751

  16. The fluid dynamic approach to equidistribution methods for grid generation and adaptation

    SciTech Connect

    Delzanno, Gian Luca; Finn, John M

    2009-01-01

    The equidistribution methods based on L{sub p} Monge-Kantorovich optimization [Finn and Delzanno, submitted to SISC, 2009] and on the deformation [Moser, 1965; Dacorogna and Moser, 1990, Liao and Anderson, 1992] method are analyzed primarily in the context of grid generation. It is shown that the first class of methods can be obtained from a fluid dynamic formulation based on time-dependent equations for the mass density and the momentum density, arising from a variational principle. In this context, deformation methods arise from a fluid formulation by making a specific assumption on the time evolution of the density (but with some degree of freedom for the momentum density). In general, deformation methods do not arise from a variational principle. However, it is possible to prescribe an optimal deformation method, related to L{sub 1} Monge-Kantorovich optimization, by making a further assumption on the momentum density. Some applications of the L{sub p} fluid dynamic formulation to imaging are also explored.

  17. Dynamic Culture Conditions to Generate Silk-Based Tissue-Engineered Vascular Grafts

    PubMed Central

    Zhang, Xiaohui; Wang, Xiuli; Keshav, Vinny; Wang, Xiaoqin; Johanas, Jacqueline; Leisk, Gary; Kaplan, David L

    2009-01-01

    Tissue engineering is an alternative approach for the preparation of small-diameter (<6 mm) vascular grafts due to the potential to control thrombosis, anastomotic cellular hyperplasia and matrix production. This control also requires the maintenance of graft patency in vivo, appropriate mechanical properties and the formation of a functional endothelium. As a first step in generating such tissue-engineered vascular grafts (TEVG), our objective was to develop a tissue-engineered construct that mimicked the structure of blood vessels using tubular electrospun silk fibroin scaffolds (ESFS) with suitable mechanical properties. Human coronary artery smooth muscle cells (HCASMCs) and human aortic endothelial cells (HAECs) were sequentially seeded onto the luminal surface of the tubular scaffolds and cultivated under physiological pulsatile flow. The results demonstrated that TEVGs under dynamic flow conditions had better outcome than static culture controls in terms of cell proliferation and alignment, ECM production and cell phenotype based on transcript and protein level assessments. The metabolic activity of HCASMCs present in the TEGs indicated the advantage of dynamic flow over static culture in effective nutrient and oxygen distribution to the cells. A matrigel coating as a basement membrane mimic for ECM significantly improved endothelium coverage and retention under physiological shear forces. The results demonstrate the successful integration of vascular cells into silk electrospun tubular scaffolds as a step toward the development of a TEVG similar to native vessels in terms of vascular cell outcomes and mechanical properties. PMID:19232717

  18. Plasma formation and dynamics in conical wire arrays in the Llampudken pulsed power generator

    SciTech Connect

    Muñoz, C. Gonzalo E-mail: fveloso@fis.puc.cl; Valenzuela, Vicente E-mail: fveloso@fis.puc.cl; Veloso, Felipe E-mail: fveloso@fis.puc.cl; Favre, Mario E-mail: fveloso@fis.puc.cl; Wyndham, Edmund E-mail: fveloso@fis.puc.cl

    2014-12-15

    Plasma formation and dynamics from conical wire array is experimentally studied. Ablation from the wires is observed, forming plasma accumulation at the array axis and subsequently a jet outflow been expelled toward the top of the array. The arrays are composed by 16 equally spaced 25μ diameter tungsten wires. Their dimensions are 20mm height, with base diameters of 8mm and 16mm top diameter. The array loads are design to be overmassed, hence no complete ablation of the wires is observed during the current rise. The experiments have been carried out in the Llampudken. pulsed power generator (∼350kA in ∼350ns). Plasma dynamics is studied in both side-on and end-on directions. Laser probing (shadowgraphy) is achieved using a frequency doubled Nd:YAG laser (532nm, 12ps FWHM) captured by CCD cameras. Pinhole XUV imaging is captured using gated microchannel plate cameras with time resolution ∼5ns. Results on the jet velocity and the degree of collimation indicating the plausibility on the use of these jets as comparable to the study astrophysically produced jets are presented and discussed.

  19. Further evidence for a dynamically generated secondary bow in 13C+12C rainbow scattering

    NASA Astrophysics Data System (ADS)

    Ohkubo, S.; Hirabayashi, Y.; Ogloblin, A. A.

    2015-11-01

    The existence of a secondary bow is confirmed for 13C+12C nuclear rainbow scattering in addition to the 16O+12C system. This is found by studying the experimental angular distribution of 13C+12C scattering at the incident 13C energy EL=250 MeV with an extended double-folding (EDF) model that describes all the diagonal and off-diagonal coupling potentials derived from the microscopic wave functions for 12C using a density-dependent nucleon-nucleon force. The Airy minimum at θ ≈70°, which is not reproduced by a conventional folding potential, is revealed to be a secondary bow generated dynamically by a coupling to the excited state 2+ (4.44 MeV) of 12C. The essential importance of the quadruple Y 2 term (reorientation term) of potential of the excited state 2+ of 12C for the emergence of a secondary bow is found. The mechanism of the secondary bow is intuitively explained by showing how the trajectories are refracted dynamically into the classically forbidden angular region beyond the rainbow angle of the primary rainbow.

  20. The Open Cloud Testbed: Supporting Open Source Cloud Computing Systems Based on Large Scale High Performance, Dynamic Network Services

    NASA Astrophysics Data System (ADS)

    Grossman, Robert; Gu, Yunhong; Sabala, Michal; Bennet, Colin; Seidman, Jonathan; Mambratti, Joe

    Recently, a number of cloud platforms and services have been developed for data intensive computing, including Hadoop, Sector, CloudStore (formerly KFS), HBase, and Thrift. In order to benchmark the performance of these systems, to investigate their interoperability, and to experiment with new services based on flexible compute node and network provisioning capabilities, we have designed and implemented a large scale testbed called the Open Cloud Testbed (OCT). Currently OCT has 120 nodes in 4 data centers: Baltimore, Chicago (two locations), and San Diego. In contrast to other cloud testbeds, which are in small geographic areas and which are based on commodity Internet services, the OCT is a wide area testbed and the 4 data centers are connected with a high performance 10Gb/s network, based on a foundation of dedicated lightpaths. This testbed can address the requirements of extremely large data streams that challenge other types of distributed infrastructure. We have also developed several utilities to support the development of cloud computing systems and services, including novel node and network provisioning services, a monitoring system, and an RPC system. In this paper, we describe the OCT concepts, architecture, infrastructure, a few benchmarks that were developed for this platform, interoperability studies, and results.

  1. Design, Fabrication and Performance of Open Source Generation I and II Compliant Hydrodynamic Gas Foil Bearings

    NASA Technical Reports Server (NTRS)

    DellaCorte, Christopher; Radil, Kevin C.; Bruckner, Robert J.; Howard, S. Adam

    2007-01-01

    Foil gas bearings are self-acting hydrodynamic bearings made from sheet metal foils comprised of at least two layers. The innermost top foil layer traps a gas pressure film that supports a load while a layer or layers underneath provide an elastic foundation. Foil bearings are used in many lightly loaded, high-speed turbo-machines such as compressors used for aircraft pressurization, and small micro-turbines. Foil gas bearings provide a means to eliminate the oil system leading to reduced weight and enhanced temperature capability. The general lack of familiarity of the foil bearing design and manufacturing process has hindered their widespread dissemination. This paper reviews the publicly available literature to demonstrate the design, fabrication and performance testing of both first and second generation bump style foil bearings. It is anticipated that this paper may serve as an effective starting point for new development activities employing foil bearing technology.

  2. Utilizing Linked Open Data Sources for Automatic Generation of Semantic Metadata

    NASA Astrophysics Data System (ADS)

    Nummiaho, Antti; Vainikainen, Sari; Melin, Magnus

    In this paper we present an application that can be used to automatically generate semantic metadata for tags given as simple keywords. The application that we have implemented in Java programming language creates the semantic metadata by linking the tags to concepts in different semantic knowledge bases (CrunchBase, DBpedia, Freebase, KOKO, Opencyc, Umbel and/or WordNet). The steps that our application takes in doing so include detecting possible languages, finding spelling suggestions and finding meanings from amongst the proper nouns and common nouns separately. Currently, our application supports English, Finnish and Swedish words, but other languages could be included easily if the required lexical tools (spellcheckers, etc.) are available. The created semantic metadata can be of great use in, e.g., finding and combining similar contents, creating recommendations and targeting advertisements.

  3. Generation of high-voltage pulses with subnanosecond front rise times in open discharge

    SciTech Connect

    Bokhan, P. A.; Gugin, P. P.; Lavrukhin, M. A.; Zakrevsky, Dm. E.

    2013-03-15

    The investigation results for plasma switching devices of high-voltage pulses with pulse rise times less than 1 ns are presented. The approach is based on using conditions suitable for bringing a gas discharge chamber in a state with high conductivity due to generation of an electron beam owing to photoelectron emission from the device cathode. It is shown that in co-axial geometry pulses, switching time 0.45 ns on an active load R{sub L} = 50 {Omega} at voltage U = 20 kV can be achieved. It is shown with the method of doubled impulses that such a device can regenerate the acceptable electric strength during 10 {mu}s. It is indicated of the principle possibility of working in the pulse-periodical regime to the repetition rate of 100 kHz.

  4. Propagation of premixed laminar flames in 3D narrow open ducts using RBF-generated finite differences

    NASA Astrophysics Data System (ADS)

    Bayona, Victor; Kindelan, Manuel

    2013-10-01

    Laminar flame propagation is an important problem in combustion modelling for which great advances have been achieved both in its theoretical understanding and in the numerical solution of the governing equations in 2D and 3D. Most of these numerical simulations use finite difference techniques on simple geometries (channels, ducts, ...) with equispaced nodes. The objective of this work is to explore the applicability of the radial basis function generated finite difference (RBF-FD) method to laminar flame propagation modelling. This method is specially well suited for the solution of problems with complex geometries and irregular boundaries. Another important advantage is that the method is independent of the dimension of the problem and, therefore, it is very easy to apply in 3D problems with complex geometries. In this work we use the RBF-FD method to compute 2D and 3D numerical results that simulate premixed laminar flames with different Lewis numbers propagating in open ducts.

  5. Improvement of deoxidization efficiency of nitric monoxide by shortening pulse width of semiconductor opening switch pulse power generator

    NASA Astrophysics Data System (ADS)

    Kakuta, Takatoshi; Yagi, Ippei; Takaki, Koichi

    2015-01-01

    The deoxidization efficiency of nitric monoxide (NO) was improved by shortening the pulse width of the voltage applied to a corona reactor. The deoxidization efficiency of NO was evaluated as the NO removal efficiency in nitrogen (N2) gas containing 200 ppm NO. The corona reactor had a coaxial geometry and consisted of center high-voltage wire and outer grounded cylinder electrodes. A nanosecond high-voltage pulse was generated using an inductive energy storage pulse power circuit with a semiconductor opening switch and was applied to the center wire electrode in the corona reactor. Fast recovery diodes were utilized as a semiconductor opening switch. The pulse width of the applied voltage was reduced from 21 to 14 ns with the arrester connected in parallel to the reactor. The energy efficiency for NO removal was improved from 8.2 to 35.7 g kW-1 h-1 with the arrester connected. The pulse width was also reduced to 8 ns by optimizing the circuit parameters. It was confirmed from observation with an intensified charge-coupled device (ICCD) camera that the streamer corona discharge transited to a glowlike discharge after the streamer propagated from the center wire electrode to the outer cylinder electrode. The duration of the glowlike phase was reduced with the arrester connected. The energy consumed in the glowlike phase was also reduced from 15.7 to 4.6 mJ with the arrester connected.

  6. Generation of high-voltage pulses with a subnanosecond leading edge in an open discharge. II. Switching mechanism

    NASA Astrophysics Data System (ADS)

    Bokhan, P. A.; Gugin, P. P.; Zakrevskii, D. E.; Lavrukhin, M. A.

    2015-10-01

    The mechanism of fast switching in open-discharge-based devices is clarified by analyzing the feature of the I-V characteristic of a quasi-stationary open discharge: at a voltage of 3-4 kV, the characteristic sharply rises, obeying the law j ~ U y with y > 10 ( j is the current density). Such a run of the curve is explained by the fact that at U > 3 kV helium atom excitation by fast helium atoms becomes the main reason for VUV radiation. Fast helium atoms result from the resonance charge exchange between He+ ions moving from the anode to the cathode. In the coaxial design and in the sandwich design consisting of two accelerating gaps in which electrons move toward each other, multiple oscillations of electrons take place. This favors the generation of fast atoms and, accordingly, resonance VUV photons. Switching times as short as 0.5 ns are achieved. The minimal switching time estimated from experimental data equals 100 ps.

  7. Open, Dynamic Content and e-Learning Management Infrastructure for Engineering and Natural Sciences

    ERIC Educational Resources Information Center

    Stav, John B.; Tsalapatas, Hariklia

    2004-01-01

    NS-eCMS is developing an open web-based content management, communication, and collaboration eLearning platform that addresses the specialized requirements for distance education in natural sciences. The federated architecture enables straightforward development, exchange, and publication of material through open standards like XML/MathML. The…

  8. PET2OGS: Algorithms to link the static model of Petrel with the dynamic model of OpenGeoSys

    NASA Astrophysics Data System (ADS)

    Park, C.-H.; Shinn, Y. J.; Park, Y.-C.; Huh, D.-G.; Lee, S. K.

    2014-01-01

    A set of three algorithms named PET2OGS is developed to integrate the static model (Petrel) with the dynamic model (OpenGeoSys). PET2OGS consists of three sub-algorithms that convert finite difference methods (FDMs) grids to finite element methods (FEMs) grids. The algorithms and the workflow of the integration procedures are described in detail. After the proposed algorithms are tested on a variety of grids both in homogeneous and heterogeneous media, the integrated platform of the static and dynamic models is applied to model CO2 storage in a saline aquifer. A successful demonstration of the proposed algorithms proved a robust integration of the platform. With some minor modifications of the algorithms in the part of input and output, the proposed algorithms can be extended to integrate different combinations of FDM-based static models and FEM-based dynamic models beyond the example combination in the paper.

  9. Investigation of poly(styrene-divinylbenzene-vinylsulfonic acid) as retentive and electroosmotic flow generating phase in open-tubular electrochromatography.

    PubMed

    De Smet, Seppe; Lynen, Frederic

    2015-07-24

    In this work, a new sulfonated polystyrene based porous layer was synthesized on the wall of a capillary by a single step in situ polymerization process. To obtain a capillary suited for electrochromatography, vinylsulfonic acid (VSA) was, next to divinylbenzene (DVB), copolymerized to induce charges for the electroosmotic flow (EOF) generation. The VSA ratio in the monomer mixture and the polymerization time were optimized while the chromatographic characteristics of the obtained open tubular columns were investigated in electrochromatography. To allow unambiguous study of only chromatographic processes, evaluations were performed with a mixture of sufficiently retained and electrophoretically neutral parabens. Comparison of SEM pictures and chromatograms revealed that the polymerization time had a great influence on the polymer layer morphology and on the chromatographic performance. An increase in the VSA ratio, led to an increase in the mobile phase velocity but simultaneously lowered paraben retention. The novel optimized stationary phase could generate a stable and significant electro-osmotic flow (EOF) of 1.1mm/s over a wide pH range which could be produced in a reproducible manner. Minimal plate heights of 10μm, equivalent to the capillary internal diameter, were obtained. The open-tubular character of this optimized porous layer column allowed successful analyses at elevated temperature, resulting in a maximum efficiency of 85,500 plates for a 75cm capillary and linear velocities up to 1.4mm/s. Finally, a thermal gradient was successfully applied, leading to artificial sharpened peaks with a peak capacity of 55 in a 20min time span. PMID:26065568

  10. Using Computational Fluid Dynamics to investigate the generation of soluble bedrock forms

    NASA Astrophysics Data System (ADS)

    Myre, J. M.; Covington, M. D.

    2014-12-01

    The roles and interactions of processes that generate bedforms in soluble bedrock settings are not yet fully understood. One outstanding puzzle is the morphogenesis of scallops. Current chemical theory does not allow dissolution rate to spatially vary under many of the conditions at which scallops are thought to form. This lack of variation in dissolution rate disagrees with the creation and existence of scallops for a large portion of the range of scallop sizes that are found in nature. Previous studies that have examined processes that generate bedforms using computational fluid dynamics (CFD) have made simplifying assumptions to ensure tractability. Consequently, tractability is sacrificed and some fine scale effects associated with the driving processes are not modeled. We incorporate Large-Eddy Simulation (LES) and adaptive meshing into a lattice-Boltzmann CFD method for fluid flow, chemical dissolution, and solute transport allowing relaxation of simplifying assumptions employed in previous models. These methods can model sub-grid scale turbulence and resolve the dissolution and precipitation processes occurring at the fluid-solid interface. We use this CFD model to simulate flow and dissolution over scallops and flutes to investigate the formational processes responsible for variations in dissolution rate that drive the spatio-temporal evolution of these features.

  11. Dynamics of riparian wetlands and stream flow generation in montane watersheds

    NASA Astrophysics Data System (ADS)

    Piegat, K.; Tetzlaff, D.; McDonnell, J. J.; Soulsby, C.

    2011-12-01

    Previous work in the Scottish Highlands has shown that the dynamic expansion and contraction of riparian wetlands exerts a dominant control on the delivery of storm runoff to channel networks. However, the way in which hillslope subsurface flow connects to these wetlands is poorly understood. Consequently, although saturation overland flow from these wetlands is a dominant storm runoff process, it is unclear to what extent this is controlled by direct precipitation inputs or exfiltration of hillslope groundwaters. This contribution reports a multivariate study of a 3.2km2 watershed that integrates hydrometric and isotopic characterisation of soil and groundwater in riparian wetlands. The investigation focuses on internal processes of water partitioning, storage, and release along a hillslope transect encompassing three main hydrological response units. The units are based on the UK HOST (Hydrology of Soil Type) hydropedological classification system, and grade from freely draining steep uplands with podzolic soils, through a transitional zone of peaty gley soils in lower slopes and then riparian wetlands dominated by deeper peat. Preliminary results indicate that high moisture retention in the peaty soils and low hydraulic gradients maintain saturated or near-saturated conditions even during drier periods. Thus expansion of saturation zones occurs rapidly in response to direct precipitation and generates overland flow, though this is mainly generated by pre-event water. However, transient rises in groundwater tables in upslope areas also contribute to the storm period recession, and hillslope groundwater drainage continues to feed the riparian wetlands during baseflows.

  12. Second Harmonic Generation for time-resolved monitoring of membrane pore dynamics subserving electroporation of neurons

    PubMed Central

    Zalvidea, Dobryna; Claverol-Tinturé, Enric

    2011-01-01

    Electroporation of neurons, i.e. electric-field induced generation of membrane nanopores to facilitate internalization of molecules, is a classic technique used in basic neuroscience research and recently has been proposed as a promising therapeutic strategy in the area of neuro-oncology. To optimize electroporation parameters, optical techniques capable of delivering time and spatially-resolved information on electroporation pore formation at the nanometer scale would be advantageous. For this purpose we describe here a novel optical method based on second harmonic generation (SHG) microscopy. Due to the nonlinear and coherent nature of SHG, the 3D radiation lobes from stained neuronal membranes are sensitive to the spatial distribution of scatterers in the illuminated patch, and in particular to nanopore formation.We used phase-array analysis to computationally study the SHG signal as a function of nanopore size and nanopore population density and confirmed experimentally, in accordance with previous work, the dependence of nanopore properties on membrane location with respect to the electroporation electric field; higher nanopore densities, lasting < 5 milliseconds, are observed at membrane patches perpendicular to the field whereas lower density is observed at partly tangent locations. Differences between near-anode and near-cathode cell poles are also measured, showing higher pore densities at the anodic pole compared to cathodic pole. This technique is promising for the study of nanopore dynamics in neurons and for the optimization of novel electroporation-based therapeutic approaches. PMID:21339876

  13. Nonlinear dynamics and global indeterminacy in an overlapping generations model with environmental resources

    NASA Astrophysics Data System (ADS)

    Antoci, Angelo; Gori, Luca; Sodini, Mauro

    2016-09-01

    We analyse the dynamics of an economy formed of overlapping generations of individuals whose well-being depends on leisure, consumption of a private good and a free access environmental resource. The production activity of the private good deteriorates the environmental resource. Individuals may defend themselves from environmental degradation by increasing consumption of the private good, which may be perceived as a "substitute" for services provided by the environmental resource. However, the resulting increase in production and consumption of the private good generates a further increase in environmental deterioration leading economic agents to increase production and consumption of the private good itself. This substitution mechanism is clearly self-reinforcing and may fuel an undesirable economic growth process according to which an increase in consumption of the private good - and the resulting increase in Gross Domestic Product - is associated with a reduction in individuals' well-being. The article shows the emergence of several global phenomena, and individuals' expectations about the future evolution of the environmental quality can give rise to (local and global) indeterminacy about the growth path the economy will follow starting from a given initial position.

  14. A simple non-chaotic map generating subdiffusive, diffusive, and superdiffusive dynamics.

    PubMed

    Salari, Lucia; Rondoni, Lamberto; Giberti, Claudio; Klages, Rainer

    2015-07-01

    Analytically tractable dynamical systems exhibiting a whole range of normal and anomalous deterministic diffusion are rare. Here, we introduce a simple non-chaotic model in terms of an interval exchange transformation suitably lifted onto the whole real line which preserves distances except at a countable set of points. This property, which leads to vanishing Lyapunov exponents, is designed to mimic diffusion in non-chaotic polygonal billiards that give rise to normal and anomalous diffusion in a fully deterministic setting. As these billiards are typically too complicated to be analyzed from first principles, simplified models are needed to identify the minimal ingredients generating the different transport regimes. For our model, which we call the slicer map, we calculate all its moments in position analytically under variation of a single control parameter. We show that the slicer map exhibits a transition from subdiffusion over normal diffusion to superdiffusion under parameter variation. Our results may help to understand the delicate parameter dependence of the type of diffusion generated by polygonal billiards. We argue that in different parameter regions the transport properties of our simple model match to different classes of known stochastic processes. This may shed light on difficulties to match diffusion in polygonal billiards to a single anomalous stochastic process. PMID:26232964

  15. Dynamics of cross-bridge cycling, ATP hydrolysis, force generation, and deformation in cardiac muscle.

    PubMed

    Tewari, Shivendra G; Bugenhagen, Scott M; Palmer, Bradley M; Beard, Daniel A

    2016-07-01

    Despite extensive study over the past six decades the coupling of chemical reaction and mechanical processes in muscle dynamics is not well understood. We lack a theoretical description of how chemical processes (metabolite binding, ATP hydrolysis) influence and are influenced by mechanical processes (deformation and force generation). To address this need, a mathematical model of the muscle cross-bridge (XB) cycle based on Huxley's sliding filament theory is developed that explicitly accounts for the chemical transformation events and the influence of strain on state transitions. The model is identified based on elastic and viscous moduli data from mouse and rat myocardial strips over a range of perturbation frequencies, and MgATP and inorganic phosphate (Pi) concentrations. Simulations of the identified model reproduce the observed effects of MgATP and MgADP on the rate of force development. Furthermore, simulations reveal that the rate of force re-development measured in slack-restretch experiments is not directly proportional to the rate of XB cycling. For these experiments, the model predicts that the observed increase in the rate of force generation with increased Pi concentration is due to inhibition of cycle turnover by Pi. Finally, the model captures the observed phenomena of force yielding suggesting that it is a result of rapid detachment of stretched attached myosin heads. PMID:25681584

  16. System dynamics model for hospital waste characterization and generation in developing countries.

    PubMed

    Eleyan, Derar; Al-Khatib, Issam A; Garfield, Joy

    2013-10-01

    Waste management policy makers always face the problem of how to predict the future amount and composition of medical solid waste, which, in turn, helps to determine the most appropriate treatment, recycling and disposal strategy. An accurate prediction can assist in both the planning and design of medical solid waste management systems. Insufficient budget and unavailable management capacity are the main reasons for the scarcity of medical solid waste quantities and components historical records, which are so important in long-term system planning and short-term expansion programs. This article presents a new technique, using System Dynamics modeling, to predict generated medical solid waste in a developing urban area, based on a set of limited samples from Jenin District hospitals, Palestine. The findings of the model present the trend of medical solid waste generation together with its different components and indicate that a new forecasting approach may cover a variety of possible causative models and track inevitable uncertainties when traditional statistical least-squared regression methods are unable to handle such issues. PMID:23743573

  17. Dynamic mechanisms of generation of oscillatory cluster patterns in a globally coupled chemical system

    NASA Astrophysics Data System (ADS)

    Rotstein, Horacio G.; Wu, Hui

    2012-09-01

    We use simulations and dynamical systems tools to investigate the mechanisms of generation of phase-locked and localized oscillatory cluster patterns in a globally coupled Oregonator model where the activator receives global feedback from the inhibitor, mimicking experimental results observed in the photosensitive Belousov-Zhabotinsky reaction. A homogeneous two-cluster system (two clusters with equal cluster size) displays antiphase patterns. Heterogenous two-cluster systems (two clusters with different sizes) display both phase-locked and localized patterns depending on the parameter values. In a localized pattern the oscillation amplitude of the largest cluster is roughly an order of magnitude smaller than the oscillation amplitude of the smaller cluster, reflecting the effect of self-inhibition exerted by the global feedback term. The transition from phase-locked to localized cluster patterns occurs as the intensity of global feedback increases. Three qualitatively different basic mechanisms, described previously for a globally coupled FitzHugh-Nagumo model, are involved in the generation of the observed patterns. The swing-and-release mechanism is related to the canard phenomenon (canard explosion of limit cycles) in relaxation oscillators. The hold-and-release and hold-and-escape mechanisms are related to the release and escape mechanisms in synaptically connected neural models. The methods we use can be extended to the investigation of oscillatory chemical reactions with other types of non-local coupling.

  18. Dynamic mechanisms of generation of oscillatory cluster patterns in a globally coupled chemical system.

    PubMed

    Rotstein, Horacio G; Wu, Hui

    2012-09-14

    We use simulations and dynamical systems tools to investigate the mechanisms of generation of phase-locked and localized oscillatory cluster patterns in a globally coupled Oregonator model where the activator receives global feedback from the inhibitor, mimicking experimental results observed in the photosensitive Belousov-Zhabotinsky reaction. A homogeneous two-cluster system (two clusters with equal cluster size) displays antiphase patterns. Heterogenous two-cluster systems (two clusters with different sizes) display both phase-locked and localized patterns depending on the parameter values. In a localized pattern the oscillation amplitude of the largest cluster is roughly an order of magnitude smaller than the oscillation amplitude of the smaller cluster, reflecting the effect of self-inhibition exerted by the global feedback term. The transition from phase-locked to localized cluster patterns occurs as the intensity of global feedback increases. Three qualitatively different basic mechanisms, described previously for a globally coupled FitzHugh-Nagumo model, are involved in the generation of the observed patterns. The swing-and-release mechanism is related to the canard phenomenon (canard explosion of limit cycles) in relaxation oscillators. The hold-and-release and hold-and-escape mechanisms are related to the release and escape mechanisms in synaptically connected neural models. The methods we use can be extended to the investigation of oscillatory chemical reactions with other types of non-local coupling. PMID:22979891

  19. Generations.

    PubMed

    Chambers, David W

    2005-01-01

    Groups naturally promote their strengths and prefer values and rules that give them an identity and an advantage. This shows up as generational tensions across cohorts who share common experiences, including common elders. Dramatic cultural events in America since 1925 can help create an understanding of the differing value structures of the Silents, the Boomers, Gen Xers, and the Millennials. Differences in how these generations see motivation and values, fundamental reality, relations with others, and work are presented, as are some applications of these differences to the dental profession. PMID:16623137

  20. Relative fascicle excursion effects on dynamic strength generation during gait in children with cerebral palsy.

    PubMed

    Martín Lorenzo, T; Lerma Lara, S; Martínez-Caballero, I; Rocon, E

    2015-10-01

    Evaluation of muscle structure gives us a better understanding of how muscles contribute to force generation which is significantly altered in children with cerebral palsy (CP). While most muscle structure parameters have shown to be significantly correlated to different expressions of strength development in children with CP and typically developing (TD) children, conflicting results are found for muscle fascicle length. Muscle fascicle length determines muscle excursion and velocity, and contrary to what might be expected, correlations of fascicle length to rate of force development have not been found for children with CP. The lack of correlation between muscle fascicle length and rate of force development in children with CP could be due, on the one hand, to the non-optimal joint position adopted for force generation on the isometric strength tests as compared to the position of TD children. On the other hand, the lack of correlation could be due to the erroneous assumption that muscle fascicle length is representative of sarcomere length. Thus, the relationship between muscle architecture parameters reflecting sarcomere length, such as relative fascicle excursions and dynamic power generation, should be assessed. Understanding of the underlying mechanisms of weakness in children with CP is key for individualized prescription and assessment of muscle-targeted interventions. Findings could imply the detection of children operating on the descending limb of the sarcomere length-tension curve, which in turn might be at greater risk of developing crouch gait. Furthermore, relative muscle fascicle excursions could be used as a predictive variable of outcomes related to crouch gait prevention treatments such as strength training. PMID:26138625

  1. QuTiP 2: A Python framework for the dynamics of open quantum systems

    NASA Astrophysics Data System (ADS)

    Johansson, J. R.; Nation, P. D.; Nori, Franco

    2013-04-01

    We present version 2 of QuTiP, the Quantum Toolbox in Python. Compared to the preceding version [J.R. Johansson, P.D. Nation, F. Nori, Comput. Phys. Commun. 183 (2012) 1760.], we have introduced numerous new features, enhanced performance, and made changes in the Application Programming Interface (API) for improved functionality and consistency within the package, as well as increased compatibility with existing conventions used in other scientific software packages for Python. The most significant new features include efficient solvers for arbitrary time-dependent Hamiltonians and collapse operators, support for the Floquet formalism, and new solvers for Bloch-Redfield and Floquet-Markov master equations. Here we introduce these new features, demonstrate their use, and give a summary of the important backward-incompatible API changes introduced in this version. Catalog identifier: AEMB_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEMB_v2_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland Licensing provisions: GNU General Public License, version 3 No. of lines in distributed program, including test data, etc.: 33625 No. of bytes in distributed program, including test data, etc.: 410064 Distribution format: tar.gz Programming language: Python. Computer: i386, x86-64. Operating system: Linux, Mac OSX. RAM: 2+ Gigabytes Classification: 7. External routines: NumPy, SciPy, Matplotlib, Cython Catalog identifier of previous version: AEMB_v1_0 Journal reference of previous version: Comput. Phys. Comm. 183 (2012) 1760 Does the new version supercede the previous version?: Yes Nature of problem: Dynamics of open quantum systems Solution method: Numerical solutions to Lindblad, Floquet-Markov, and Bloch-Redfield master equations, as well as the Monte Carlo wave function method. Reasons for new version: Compared to the preceding version we have introduced numerous new features, enhanced performance, and made changes in

  2. Ultrafast polyene dynamics: the ring opening of 1,3-cyclohexadiene derivatives.

    PubMed

    Arruda, Brenden C; Sension, Roseanne J

    2014-03-14

    The light activated ring-opening reaction of the 1,3-cyclohexadiene chromophore finds application in optical control, optical switching, optical memory, light activated molecular machines, photobiology, photochromic materials, and conformation-specific photocatalysts. The development of ultrafast spectroscopic methods and powerful computational methods have accelerated the understanding and facilitated the application of this important chromophore in a wide range of systems. Here we look at the current state of theoretical and experimental understanding for the ring-opening reaction of the isolated cyclohexadiene molecule and the ring-opening reactions of substituted cyclohexadienes, including fulgides, diarylethenes, and provitamin D. PMID:24457943

  3. Employing Nested OpenMP for the Parallelization of Multi-Zone Computational Fluid Dynamics Applications

    NASA Technical Reports Server (NTRS)

    Ayguade, Eduard; Gonzalez, Marc; Martorell, Xavier; Jost, Gabriele

    2004-01-01

    In this paper we describe the parallelization of the multi-zone code versions of the NAS Parallel Benchmarks employing multi-level OpenMP parallelism. For our study we use the NanosCompiler, which supports nesting of OpenMP directives and provides clauses to control the grouping of threads, load balancing, and synchronization. We report the benchmark results, compare the timings with those of different hybrid parallelization paradigms and discuss OpenMP implementation issues which effect the performance of multi-level parallel applications.

  4. Molecular Dynamics Simulation on the Conformational Transition of the Mad2 Protein from the Open to the Closed State

    PubMed Central

    Li, Chaoqun; Zhu, Yanyan; Wang, Yan; Chen, Guangju

    2014-01-01

    The Mad2 protein, with two distinct conformations of open- and closed-states, is a key player in the spindle checkpoint. The closed Mad2 state is more active than the open one. We carried out conventional and targeted molecular dynamics simulations for the two stable Mad2 states and their conformational transition to address the dynamical transition mechanism from the open to the closed state. The intermediate structure in the transition process shows exposure of the β6 strand and an increase of space around the binding sites of β6 strand due to the unfolding of the β7/8 sheet and movement of the β6/4/5 sheet close to the αC helix. Therefore, Mad2 binding to the Cdc20 protein in the spindle checkpoint is made possible. The interconversion between these two states might facilitate the functional activity of the Mad2 protein. Motion correlation analysis revealed the allosteric network between the β1 strand and β7/8 sheet via communication of the β5-αC loop and the β6/4/5 sheet in this transition process. PMID:24690997

  5. Dynamic Characteristics of X-pinch Experiments Conducted in a Small Capacitive Generator:Refractive Optical Observations.

    NASA Astrophysics Data System (ADS)

    Sepúlveda, Adolfo; Pavez, Cristian; Pedreros, José; Avaria, Gonzalo; San Martín, Patricio; Soto, Leopoldo

    2016-05-01

    Among the dense plasmas configurations of interest for applications as a portable intense source of X-rays, the X-pinches are the most attractive by their brightness, source size, short duration and space localization, being particularly reproducible when they are conducted with fast pulsed power generators. In recent time, several characteristics of the dynamics and emission have been reproduced in compact generators (typically capacitive generators) of low current rise-rate (less than 0.5 kA/ns). In this work, a preliminary characterization of the dynamic of X-pinch plasma conducted in a small capacitive generator is reported. In order to obtain the plasma dynamics and quantitative information of the plasma density, the dark field Schlieren technique and interferometry were implemented. The experiments were carried out on the multipurpose generator (1.2 μF, 345 J, 47.5 nH, T/4=375 ns and Z = 0.2 Ω in short circuit) capable to produce currents up to 122 kA with 500 ns quarter period, when a charging voltage of 24 kV and metallic X-pinches are used as load. The electrical behavior of the discharge and the X-ray emission are monitored with a Rogowski coil and filtered PIN diodes respectively. For the refractive optical diagnostics a 532 nm frequency- doubled Nd-YAG laser was used. As from a single Schlieren record per shot, a sequence with the time evolution of the plasma is constructed. From the images, a similar dynamic of X- pinches conducted in fast generators of high current is observed, where structures such as coronal plasma, plasma flares and plasma jets are identified. The plasma dynamics observed from a VUV gated pinhole image system is compared with registered dynamic with refractive optical techniques.

  6. Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses1[OPEN

    PubMed Central

    Schwerdt, Julian G.; Wright, Frank; Oehme, Daniel; Wagner, John M.; Shirley, Neil J.; Burton, Rachel A.; Schreiber, Miriam; Zimmer, Jochen; Marshall, David F.; Waugh, Robbie; Fincher, Geoffrey B.

    2015-01-01

    Phylogenetic analyses of cellulose synthase (CesA) and cellulose synthase-like (Csl) families from the cellulose synthase gene superfamily were used to reconstruct their evolutionary origins and selection histories. Counterintuitively, genes encoding primary cell wall CesAs have undergone extensive expansion and diversification following an ancestral duplication from a secondary cell wall-associated CesA. Selection pressure across entire CesA and Csl clades appears to be low, but this conceals considerable variation within individual clades. Genes in the CslF clade are of particular interest because some mediate the synthesis of (1,3;1,4)-β-glucan, a polysaccharide characteristic of the evolutionarily successful grasses that is not widely distributed elsewhere in the plant kingdom. The phylogeny suggests that duplication of either CslF6 and/or CslF7 produced the ancestor of a highly conserved cluster of CslF genes that remain located in syntenic regions of all the grass genomes examined. A CslF6-specific insert encoding approximately 55 amino acid residues has subsequently been incorporated into the gene, or possibly lost from other CslFs, and the CslF7 clade has undergone a significant long-term shift in selection pressure. Homology modeling and molecular dynamics of the CslF6 protein were used to define the three-dimensional dispositions of individual amino acids that are subject to strong ongoing selection, together with the position of the conserved 55-amino acid insert that is known to influence the amounts and fine structures of (1,3;1,4)-β-glucans synthesized. These wall polysaccharides are attracting renewed interest because of their central roles as sources of dietary fiber in human health and for the generation of renewable liquid biofuels. PMID:25999407

  7. A hybrid programming model for compressible gas dynamics using openCL

    SciTech Connect

    Bergen, Benjamin Karl; Daniels, Marcus G; Weber, Paul M

    2010-01-01

    The current trend towards multicore/manycore and accelerated architectures presents challenges, both in portability, and also in the choices that developers must make on how to use the resources that these architectures provide. This paper explores some of the possibilities that are enabled by the Open Computing Language (OpenCL), and proposes a programming model that allows developers and scientists to more fully subscribe hybrid compute nodes, while, at the same time, reducing the impact of system failure.

  8. Dynamic impact of urbanization, economic growth, energy consumption, and trade openness on CO 2 emissions in Nigeria.

    PubMed

    Ali, Hamisu Sadi; Law, Siong Hook; Zannah, Talha Ibrahim

    2016-06-01

    The objective of this paper is to examine the dynamic impact of urbanization, economic growth, energy consumption, and trade openness on CO 2 emissions in Nigeria based on autoregressive distributed lags (ARDL) approach for the period of 1971-2011. The result shows that variables were cointegrated as null hypothesis was rejected at 1 % level of significance. The coefficients of long-run result reveal that urbanization does not have any significant impact on CO 2 emissions in Nigeria, economic growth, and energy consumption has a positive and significant impact on CO 2 emissions. However, trade openness has negative and significant impact on CO 2 emissions. Consumption of energy is among the main determinant of CO 2 emissions which is directly linked to the level of income. Despite the high level of urbanization in the country, consumption of energy still remains low due to lower income of the majority populace and this might be among the reasons why urbanization does not influence emissions of CO 2 in the country. Initiating more open economy policies will be welcoming in the Nigerian economy as the openness leads to the reduction of pollutants from the environment particularly CO 2 emissions which is the major gases that deteriorate physical environment. PMID:26983914

  9. Alpha-actinin binding kinetics modulate cellular dynamics and force generation

    PubMed Central

    Ehrlicher, Allen J.; Krishnan, Ramaswamy; Guo, Ming; Bidan, Cécile M.; Weitz, David A.; Pollak, Martin R.

    2015-01-01

    The actin cytoskeleton is a key element of cell structure and movement whose properties are determined by a host of accessory proteins. Actin cross-linking proteins create a connected network from individual actin filaments, and though the mechanical effects of cross-linker binding affinity on actin networks have been investigated in reconstituted systems, their impact on cellular forces is unknown. Here we show that the binding affinity of the actin cross-linker α-actinin 4 (ACTN4) in cells modulates cytoplasmic mobility, cellular movement, and traction forces. Using fluorescence recovery after photobleaching, we show that an ACTN4 mutation that causes human kidney disease roughly triples the wild-type binding affinity of ACTN4 to F-actin in cells, increasing the dissociation time from 29 ± 13 to 86 ± 29 s. This increased affinity creates a less dynamic cytoplasm, as demonstrated by reduced intracellular microsphere movement, and an approximate halving of cell speed. Surprisingly, these less motile cells generate larger forces. Using traction force microscopy, we show that increased binding affinity of ACTN4 increases the average contractile stress (from 1.8 ± 0.7 to 4.7 ± 0.5 kPa), and the average strain energy (0.4 ± 0.2 to 2.1 ± 0.4 pJ). We speculate that these changes may be explained by an increased solid-like nature of the cytoskeleton, where myosin activity is more partitioned into tension and less is dissipated through filament sliding. These findings demonstrate the impact of cross-linker point mutations on cell dynamics and forces, and suggest mechanisms by which such physical defects lead to human disease. PMID:25918384

  10. Dynamic Characteristics of Positive Pulsed Dielectric Barrier Discharge for Ozone Generation in Air

    NASA Astrophysics Data System (ADS)

    Wei, Linsheng; Peng, Bangfa; Li, Ming; Zhang, Yafang; Hu, Zhaoji

    2016-02-01

    A comprehensive dynamic model consisting of 66 reactions and 24 species is developed to investigate the dynamic characteristics of ozone generation by positive pulsed dielectric barrier discharge (DBD) using parallel-plate reactor in air. The electron energy conservation equation is coupled to the electron continuity equation, the heavy species continuity equation, and Poisson's equation for a better description. The reliability of the model is experimentally confirmed. The model can be used to predict the temporal and spatial evolution of species, as well as streamer propagation. The simulation results show that electron density increases nearly exponentially in the direction to the anode at the electron avalanche. Streamer propagation velocity is about 5.26 × 104 m/s from anode to cathode in the simulated condition. The primary positive ion, negative ion, and excited species are O2+, O3- and O2(1Δg) in pulsed DBD in air, respectively. N2O has the largest density among nitrogen oxides. e and N2+ densities in the streamer head increase gradually to maximum values with the development of the streamer. Meanwhile, the O2+, O, O3, N2(A3Σ) and N2O densities reach maximum values in the vicinity of the anode. supported by National Natural Science Foundation of China (Nos. 51366012 and 11105067), Jiangxi Province Young Scientists (Jinggang Star) Cultivation Plan of China (No. 20133BCB23008), Natural Science Foundation of Jiangxi, China (No. 20151BAB206047) and Jiangxi Province Higher School Science and Technology Landing Plan of China (No. KJLD-14015)

  11. Physiological modules for generating discrete and rhythmic movements: action identification by a dynamic recurrent neural network

    PubMed Central

    Bengoetxea, Ana; Leurs, Françoise; Hoellinger, Thomas; Cebolla, Ana M.; Dan, Bernard; McIntyre, Joseph; Cheron, Guy

    2014-01-01

    In this study we employed a dynamic recurrent neural network (DRNN) in a novel fashion to reveal characteristics of control modules underlying the generation of muscle activations when drawing figures with the outstretched arm. We asked healthy human subjects to perform four different figure-eight movements in each of two workspaces (frontal plane and sagittal plane). We then trained a DRNN to predict the movement of the wrist from information in the EMG signals from seven different muscles. We trained different instances of the same network on a single movement direction, on all four movement directions in a single movement plane, or on all eight possible movement patterns and looked at the ability of the DRNN to generalize and predict movements for trials that were not included in the training set. Within a single movement plane, a DRNN trained on one movement direction was not able to predict movements of the hand for trials in the other three directions, but a DRNN trained simultaneously on all four movement directions could generalize across movement directions within the same plane. Similarly, the DRNN was able to reproduce the kinematics of the hand for both movement planes, but only if it was trained on examples performed in each one. As we will discuss, these results indicate that there are important dynamical constraints on the mapping of EMG to hand movement that depend on both the time sequence of the movement and on the anatomical constraints of the musculoskeletal system. In a second step, we injected EMG signals constructed from different synergies derived by the PCA in order to identify the mechanical significance of each of these components. From these results, one can surmise that discrete-rhythmic movements may be constructed from three different fundamental modules, one regulating the co-activation of all muscles over the time span of the movement and two others elliciting patterns of reciprocal activation operating in orthogonal directions

  12. Dynamic Strain Aging in New Generation Cr-Mo-V Steel for Reactor Pressure Vessel Applications

    NASA Astrophysics Data System (ADS)

    Gupta, C.; Chakravartty, J. K.; Banerjee, S.

    2010-12-01

    A new generation nuclear reactor pressure vessel steel (CrMoV type) having compositional similarities with thick section 3Cr-Mo class of low alloy steels and adapted for nuclear applications was investigated for various manifestations of dynamic strain aging (DSA) using uniaxial tests. The steel investigated herein has undergone quenched and tempered treatment such that a tempered bainite microstructure with Cr-rich carbides was formed. The scope of the uniaxial experiments included tensile tests over a temperature range of 298 K to 873 K (25 °C to 600 °C) at two strain rates (10-3 and 10-4 s-1), as well as suitably designed transient strain rate change tests. The flow behavior displayed serrated flow, negative strain rate sensitivity, plateau behavior of yield, negative temperature ( T), and strain rate left( {dot{\\varepsilon }} right) dependence of flow stress over the temperature range of 523 K to 673 K (250 °C to 400 °C) and strain rate range of 5 × 10-3 s-1 to 3 × 10-6 s-1, respectively. While these trends attested to the presence of DSA, a lack of work hardening and near negligible impairment of ductility point to the fact that manifestations of embrittling features of DSA were significantly enervated in the new generation pressure vessel steel. In order to provide a mechanistic understanding of these unique combinations of manifestations of DSA in the steel, a new approach for evaluation of responsible solutes from strain rate change tests was adopted. From these experiments and calculation of activation energy by application of vacancy-based models, the solutes responsible for DSA were identified as carbon/nitrogen. The lack of embrittling features of DSA in the steel was rationalized as being due to the beneficial effects arising from the presence of dynamic recovery effects, presence of alloy carbides in the tempered bainitic structure, and formation of solute clusters, all of which hinder the possibilities for strong aging of dislocations.

  13. Application of computer generated color graphic techniques to the processing and display of three dimensional fluid dynamic data

    NASA Technical Reports Server (NTRS)

    Anderson, B. H.; Putt, C. W.; Giamati, C. C.

    1981-01-01

    Color coding techniques used in the processing of remote sensing imagery were adapted and applied to the fluid dynamics problems associated with turbofan mixer nozzles. The computer generated color graphics were found to be useful in reconstructing the measured flow field from low resolution experimental data to give more physical meaning to this information and in scanning and interpreting the large volume of computer generated data from the three dimensional viscous computer code used in the analysis.

  14. Lower extremity control and dynamics during backward angular impulse generation in backward translating tasks.

    PubMed

    Mathiyakom, W; McNitt-Gray, J L; Wilcox, R

    2006-03-01

    Observation of complex whole-body movements suggests that the nervous system coordinates multiple operational subsystems using some type of hierarchical control. When comparing two backward translating tasks performed with and without backward angular impulse, we have learned that task-specific modifications in trunk-leg coordination contribute to the regulation of total-body center of mass (CoM) position relative to the reaction force (RF). In this study, we hypothesized that task-specific differences in trunk-leg coordination would affect the control of the lower extremity joints during the impulse-generation phase of the tasks. Eight highly skilled performers executed a series of backward translating jumps with and without backward rotation (back somersault and back timer, respectively). Sagittal plane kinematics, RFs and electromyograms of lower extremity muscles were acquired during the take-off phase of both tasks. Lower extremity joint kinetics was calculated using inverse dynamics. The results indicate that between-task differences in the relative angles between the lower extremity segments and the net joint forces/RF contributed to significant reductions in knee-extensor net joint moments and increases in hip-extensor net joint moments during the push interval of the back somersault as compared to the back timer. Between-task differences in backward trunk angular velocity also contributed to the re-distribution of work done by the lower extremity net joint moments. Between-task differences in lower extremity joint kinetics were associated with synergistic activation of the bi-articular muscles crossing the knee and hip. These results indicated that task-specific control of CoM relative to the RF in order to regulate the backward angular-impulse-involved modification in the control and dynamics of the knee and hip joints. These results indicate that between-task differences in the control objectives at the total-body level (position of CoM relative to the

  15. Generation and dynamics of single-electrode nanosecond pulsed microplasma jets

    NASA Astrophysics Data System (ADS)

    Jiang, Chunqi; Lane, Jamie; Song, Shutong; Plasma; Pulsed Power Lab at ODU-CBE Team

    2015-11-01

    Several millimeter long, 160 - 260 micrometer-in-width, helium plasma jets were generated in ambient atmosphere when a needle electrode was excited with nanosecond high voltage pulses at single shot or up to 500 Hz. This single-electrode system does not require the use of ground electrode for plasma generation, and thus has advantages in simplicity and small-dimension for a variety of biomedical applications. Dynamics of the microplasma jet powered by high voltage pulses with two different nanosecond pulses - 5 ns and 164 ns, was studied with high speed imaging, and spatiotemporally resolved optical emission spectroscopy. Whereas the plasma jet exhibits three different modes including a positive-streamer mode, a stochastic transition, and a negative streamer-like mode when it was excited with 164 ns kilovolt pulses, such modes and transitions in the plasma development were not observed for the 5 ns pulsed excitation. Shorter pulses with shorter rise times allowed higher energy deposition into the plasma and promote rapid acceleration of the plasma wavefronts; 5 ns pulsed excitation resulted in 4 times increase in the wavefront velocity compared with the 164 ns pulsed excitation. Importantly, the production of excited atomic oxygen increased by a factor of 2 for the 5 ns pulsed plasma jet when compared with that for a 164 ns pulsed plasma jet, whereas the other excited species including He, O, H, OH, N2(C-B) and N2+(B-X) were produced at comparable rates for the two plasma jets. Work supported by the Air Force Office of Scientific Research (AFOSR Award No. FA9550-11-1-0190).

  16. Causes, Dynamics and Impacts of Lahars Generated by the April, 2015 Calbuco Eruption, Chile.

    NASA Astrophysics Data System (ADS)

    Russell, A. J.; Dussaillant, A. R.; Meier, C. I.; Rivera, A.; Barra, M. M.; Urzua, N. G.; Hernandez, J. F.; Napoleoni, F.; Gonzalez, C.

    2015-12-01

    Calbuco is a 2015m high, glacier capped, stratovolcano in the heavily populated Los Lagos district of southern Chile with a history of large volcanic eruptions in 1893-95, 1906-7, 1911-12, 1917, 1932, 1945, 1961 and 1972. Calbuco experienced a powerful 90 minute eruption at 18:04h on 22 April, 2015 followed by additional major eruptions at 01:00h and 13:10h on 23 & 30 April, respectively, resulting in the evacuation of 6500 people and the imposition of a 20 km radius exclusion zone. Pyroclastic flows descended into several river catchments radiating from the volcano with lahars travelling distances of up to 14 km, reaching populated areas. We present preliminary findings regarding the causes, dynamics and impacts of lahars generated by the April 2015 eruption. Pyroclastic flows melted glacier ice and snow generating the largest lahars in the Rio Este and Rio Blanco Sur on the southern flanks of the volcano. Lahar deposits in the Rio Blanco Norte were buried by pyroclastic flow deposits with measured temperatures of up to 282°C three months after emplacement. Lahar erosional impacts included bedrock erosion, alluvial channel incision, erosion of surficial deposits and the felling of large areas of forest. Depositional landforms included boulder run-ups on the outsides of channel bends, boulder clusters and large woody debris jams. Lahars deposited up to 8m of sediment within distal reaches. Deposits on the southern flanks of Calbuco indicate the passage of multiple pulses of contrasting rheology. Lahar occurrence and magnitude was controlled by the pre-eruption distribution of snow and ice on the volcano. Pre-existing lahar channels controlled flows to lower piedmont zones where routing was determined by palaeo lahar geomorphology. Ongoing erosion of proximal pyroclastic flow and lahar deposits provides large volumes of sediment to distal portions of fluvial systems radiating from Calbuco.

  17. Dynamics of hairpin vortices generated by a mixing tab in a channel flow

    NASA Astrophysics Data System (ADS)

    Yang, W.; Meng, H.; Sheng, J.

    To better understand mixing by hairpin vortices, time-series particle image velocimetry (PIV) was applied to the wake of a trapezoidal-shaped passive mixing tab mounted at the bottom of a square turbulent channel (Reh=2,080 based on the tab height). Instantaneous velocity/vorticity fields were obtained in sequences of 10Hz in the tab wake in the center plane (x-y) and in a plane (x-z) parallel to the wall. Periodically-shed hairpin vortices were clearly identified and seen to rise as they advected downstream. Experimental evidence shows that the vortex-induced ejection of the near-wall viscous fluid to the immediate upstream is important to the dynamics of hairpin vortices. It can increase the strength of the hairpin vortices in the near tab region and cause generation of secondary hairpin vortices further downstream when the hairpin heads are farther away from the wall. Measurements also reveal the existence of a type of new secondary vortice with the opposite-sign spanwise vorticity. The distribution of vortex loci in the x-y plane shows that the hairpin vortices and the reverse vortices are spatially segregated in distinct layers. Turbulence statistics, including mean velocity profiles, Reynolds stresses, and turbulent kinetic energy dissipation rate distributions, were obtained from the PIV data. These statistical quantities clearly reveal imprints of the identified vortex structures and provide insight into mixing effectiveness.

  18. The Role of Rac1 in the Growth Cone Dynamics and Force Generation of DRG Neurons

    PubMed Central

    Sayyad, Wasim A.; Fabris, Paolo; Torre, Vincent

    2016-01-01

    We used optical tweezers, video imaging, immunocytochemistry and a variety of inhibitors to analyze the role of Rac1 in the motility and force generation of lamellipodia and filopodia from developing growth cones of isolated Dorsal Root Ganglia neurons. When the activity of Rac1 was inhibited by the drug EHop-016, the period of lamellipodia protrusion/retraction cycles increased and the lamellipodia retrograde flow rate decreased; moreover, the axial force exerted by lamellipodia was reduced dramatically. Inhibition of Arp2/3 by a moderate amount of the drug CK-548 caused a transient retraction of lamellipodia followed by a complete recovery of their usual motility. This recovery was abolished by the concomitant inhibition of Rac1. The filopodia length increased upon inhibition of both Rac1 and Arp2/3, but the speed of filopodia protrusion increased when Rac1 was inhibited and decreased instead when Arp2/3 was inhibited. These results suggest that Rac1 acts as a switch that activates upon inhibition of Arp2/3. Rac1 also controls the filopodia dynamics necessary to explore the environment. PMID:26766136

  19. A dynamic isotope power system portable generator for the moon or Mars

    NASA Astrophysics Data System (ADS)

    Johnson, Richard A.; Hunt, Maribeth E.; Pepping, Richard E.; Mason, Lee S.

    The dynamic isotope power systems (DIPS) demonstration program is focused on a standardized 2.5 kWe portable generator for multiple uses on the lunar or Martian surface. A variety of potential remote or mobile applications has been identified by NASA. These applications include remote power to science packages, surface rovers for both short and extended duration missions, and backup to central base power. Reviews conducted on alternative power sources for these applications are described. These include the comparison of DIPS to regenerative fuel cells (RFCs). Recent work is presented refining the 2.5 kWe design to assure compatibility with the Martian environment while imposing only a minor mass penalty on lunar operations. This was accomplished by limiting temperatures, except in the heat source unit (HSU), to the nonrefractory materials regime and protecting the necessary refractories in the HSU from the environment. Design changes to the HSU are described. Work related to recent concerns regarding astronaut radiation doses is described. This work includes the bases for the calculations to determine the necessary shielding or operational limitations.

  20. Gas phase dynamics of laser-generated nanoparticle populations and its application to nanomaterials fabrication

    NASA Astrophysics Data System (ADS)

    Bulut, Mevlut

    Naturally occurring materials often derive their outstanding properties from optimal anisotropic arrangements of nanoscale constituents. This requires a hierarchical organization of matter over several length scales, which is difficult to achieve in artificial materials made by conventional physical and chemical methods. This dissertation explores the combination of laser and aerosol processes as a novel approach to make thin film materials with a level of microscopic organization similar to that found in nature. Through a systematic investigation of the behavior of the gas-phase dynamics of nanoparticles generated by laser ablation of solid target materials in background gases and a study of the physical processes involved in gas-phase nanoparticle processing, a new instrument integrating a laser ablation source and an aerosol spectrometer was designed and implemented. Film deposition and nanoparticle deposition processes can be manipulated independently affording greater flexibility for materials fabrication than other laser methods. The integrated laser-aerosol method is very flexible and can be used in the synthesis of a variety of materials. In this dissertation it is applied to the deposition of nanocomposite thin films comprising tetrahedral amorphous carbon (ta-C) with embedded metal nanoparticles. The controlled incorporation of metal nanoparticles enables the modulation of the electrical conductivity of ta-C over four orders of magnitude without significantly or adversely affecting its mechanical properties.

  1. Dynamical hologram generation for high speed optical trapping of smart droplet microtools.

    PubMed

    Lanigan, P M P; Munro, I; Grace, E J; Casey, D R; Phillips, J; Klug, D R; Ces, O; Neil, M A A

    2012-07-01

    This paper demonstrates spatially selective sampling of the plasma membrane by the implementation of time-multiplexed holographic optical tweezers for Smart Droplet Microtools (SDMs). High speed (>1000fps) dynamical hologram generation was computed on the graphics processing unit of a standard display card and controlled by a user friendly LabView interface. Time multiplexed binary holograms were displayed in real time and mirrored to a ferroelectric Spatial Light Modulator. SDMs were manufactured with both liquid cores (as previously described) and solid cores, which confer significant advantages in terms of stability, polydispersity and ease of use. These were coated with a number of detergents, the most successful based upon lipids doped with transfection reagents. In order to validate these, trapped SDMs were maneuvered up to the plasma membrane of giant vesicles containing Nile Red and human biliary epithelial (BE) colon cancer cells with green fluorescent labeled protein (GFP)-labeled CAAX (a motif belonging to the Ras protein). Bright field and fluorescence images showed that successful trapping and manipulation of multiple SDMs in x, y, z was achieved with success rates of 30-50% and that subsequent membrane-SDM interactions led to the uptake of Nile Red or GFP-CAAX into the SDM. PMID:22808432

  2. Picosecond Spectroscopy of Reactive Intermediates: Generation and Dynamics of Arylmethyl Ions and Radicals in Solution.

    NASA Astrophysics Data System (ADS)

    Schmidt, Jeffrey Allan

    A detailed experimental description is presented of a practical and relatively inexpensive approach for two simultaneous and independent types of picosecond spectroscopic measurements. Two data collection subsystems, (1) a picosecond pump-probe transient absorption/emission spectrometer and (2) a streak camera system for time-dependent measurements of absorption and emission, were developed as independent subsystems within an integrated system based on a single mode-locked Nd:YAG laser which concurrently supplies each subsystem with picosecond pulses. Considerations concerning electrical and optical interfacing between the two subsystems are discussed. With these two subsystems, picosecond-pulsed photolyses of diphenylmethyl chloride, diphenylmethyl bromide, triphenylmethyl chloride, triphenylmethyl bromide, and triphenylacetyl chloride in acetonitrile, methylene chloride, and cyclohexane were studied. The dependence of the yields of radicals and ions are discussed with respect to the nature of the starting compound and the solvent. Ion-pair dynamics were monitored with subsystems 1 and 2. Microscopic rate constants for the collapse of the contact ion pair (CIP), separation of the CIP, and reformation of the CIP from the separated ions were calculated. The photophysics and photochemistry of the triphenylmethyl radical generated from triphenylmethyl chloride, and triphenylacetyl chloride, and tert-butyl triphenylperacetate in solution were studied by means of a unique three-pulse picosecond transient absorption technique. The emission lifetime of the excited triphenylmethyl radical was measured as a function of solvent polarity with subsystem 2. These data were collectively used to gain an understanding of the electronically excited triphenylmethyl radical.

  3. Dynamical hologram generation for high speed optical trapping of smart droplet microtools

    PubMed Central

    Lanigan, P. M. P.; Munro, I.; Grace, E. J.; Casey, D. R.; Phillips, J.; Klug, D. R.; Ces, O.; Neil, M. A. A.

    2012-01-01

    This paper demonstrates spatially selective sampling of the plasma membrane by the implementation of time-multiplexed holographic optical tweezers for Smart Droplet Microtools (SDMs). High speed (>1000fps) dynamical hologram generation was computed on the graphics processing unit of a standard display card and controlled by a user friendly LabView interface. Time multiplexed binary holograms were displayed in real time and mirrored to a ferroelectric Spatial Light Modulator. SDMs were manufactured with both liquid cores (as previously described) and solid cores, which confer significant advantages in terms of stability, polydispersity and ease of use. These were coated with a number of detergents, the most successful based upon lipids doped with transfection reagents. In order to validate these, trapped SDMs were maneuvered up to the plasma membrane of giant vesicles containing Nile Red and human biliary epithelial (BE) colon cancer cells with green fluorescent labeled protein (GFP)-labeled CAAX (a motif belonging to the Ras protein). Bright field and fluorescence images showed that successful trapping and manipulation of multiple SDMs in x, y, z was achieved with success rates of 30-50% and that subsequent membrane-SDM interactions led to the uptake of Nile Red or GFP-CAAX into the SDM. PMID:22808432

  4. Theoretical study of the KKK system and dynamical generation of the K(1460) resonance

    SciTech Connect

    Martinez Torres, A.; Jido, D.; Kanada-En'yo, Y.

    2011-06-15

    The KKK system is investigated with a coupled-channel approach based on solving the Faddeev equations considering the KKK, K{pi}{pi}, and K{pi}{eta} channels and using as input two-body t matrices that generate dynamically the f{sub 0}(980) and a{sub 0}(980) resonances. In the present calculation, a quasibound state around 1420 MeV with total isospin I=1/2 and spin-parity J{sup {pi}=}0{sup -} is found below the three-kaon threshold. This state can be identified with the K(1460) resonance listed by the Particle Data Group. We also study the KKK system in a single-channel three-body potential model with two-body effective KK and KK interactions, in which the KK interaction is adjusted to reproduce the properties of the f{sub 0}(980) and a{sub 0}(980) resonances as KK bound states, obtaining a very similar result to the one found in the Faddeev approach.

  5. Dynamic generation of artificial HRSAR imagery for ATR development and cockpit simulation

    NASA Astrophysics Data System (ADS)

    Seidel, Heiko; Stahl, Christoph; Knappe, Peter; Hurst, Peter

    2004-09-01

    Following the tendency of increasingly using imaging sensors in military aircraft, future combat airplane pilots will need onboard artificial intelligence for aiding them in image interpretation and target designation. This document presents a system which is able to simulate high-resolution artificial SAR imagery and thereby facilitates automatic target recognition (ATR) algorithm development. The system provides a comprehensive interface that allows dynamically requesting imagery depending on the location and heading of a simulated carrier platform. Landscapes, structures and target signatures are generated based on digital terrain data and target models. An assessment of dissimilar database preparations for sensor simulation was done with respect to the different properties of SAR imaging compared to optical imaging. The document presents selected results for specific landscape elements. Post-processing algorithms for overcoming weaknesses of digital terrain databases and improving image realism are presented. Simulated sensor imagery is useful in a wide range of applications, two of which are training of ATR algorithms and sensor simulation in flight simulation environments. Using an existing ATR method as an example, the applicability and the influences of synthetic imagery on ATR training are shown and first approaches on how to validate the correctness of the imagery are explained. The integration of the system into a flight simulator in the context of interfacing and control topics serves as a concluding example.

  6. Generating functional analysis of the dynamics of the batch minority game with random external information.

    PubMed

    Heimel, J A; Coolen, A C

    2001-05-01

    We study the dynamics of the batch minority game, with random external information, using generating functional techniques introduced by De Dominicis. The relevant control parameter in this model is the ratio alpha=p/N of the number p of possible values for the external information over the number N of trading agents. In the limit N-->infinity we calculate the location alphac of the phase transition (signaling the onset of anomalous response), and solve the statics for alpha>alphac exactly. The temporal correlations in global market fluctuations turn out not to decay to zero for infinitely widely separated times. For alpha0 we analyze our equations in leading order in alpha, and find asymptotic solutions with diverging volatility sigma=O(alpha(-1/2)) (as regularly observed in simulations), but also asymptotic solutions with vanishing volatility sigma=O(alpha(1/2)). The former, however, are shown to emerge only if the agents' initial strategy valuations are below a specific critical value. PMID:11414975

  7. Multiple exciton generation and ultrafast exciton dynamics in HgTe colloidal quantum dots.

    PubMed

    Al-Otaify, Ali; Kershaw, Stephen V; Gupta, Shuchi; Rogach, Andrey L; Allan, Guy; Delerue, Christophe; Binks, David J

    2013-10-21

    The investigation of sub-nanosecond exciton dynamics in HgTe colloidal quantum dots using ultrafast transient absorption spectroscopy is reported. The transmittance change spectrum acquired immediately after pumping is dominated by a bleach blue-shifted by ~200-300 nm from the photoluminescent emission band. Comparison with a tight-binding model of the electronic structure allows this feature to be attributed to the filling of band edge states. The form of the pump-induced transmittance transients is dependent on the excitation rate and the rate of sample stirring. For moderate pumping of stirred samples, the transmittance transients are well-described by a mono-exponential decay associated with biexciton recombination, with a lifetime of 49 ± 2 ps. For samples that are strongly-pumped or unstirred, the decay becomes bi-exponential in form, indicating that trap-related recombination has become significant. We also present a new analysis that enables fractional transmittance changes to be related to band edge occupation for samples with arbitrary optical density at the pump wavelength. This allows us to identify the occurrence of multiple exciton generation, which results in a quantum yield of 1.36 ± 0.04 for a photon energy equivalent to 3.1 times the band gap, in good agreement with the results of the model. PMID:23999734

  8. Time and space in the middle paleolithic: Spatial structure and occupation dynamics of seven open-air sites.

    PubMed

    Clark, Amy E

    2016-05-01

    The spatial structure of archeological sites can help reconstruct the settlement dynamics of hunter-gatherers by providing information on the number and length of occupations. This study seeks to access this information through a comparison of seven sites. These sites are open-air and were all excavated over large spatial areas, up to 2,000 m(2) , and are therefore ideal for spatial analysis, which was done using two complementary methods, lithic refitting and density zones. Both methods were assessed statistically using confidence intervals. The statistically significant results from each site were then compiled to evaluate trends that occur across the seven sites. These results were used to assess the "spatial consistency" of each assemblage and, through that, the number and duration of occupations. This study demonstrates that spatial analysis can be a powerful tool in research on occupation dynamics and can help disentangle the many occupations that often make up an archeological assemblage. PMID:27312187

  9. Next Generation Online: Advancing Learning through Dynamic Design, Virtual and Web 2.0 Technologies, and Instructor "Attitude"

    ERIC Educational Resources Information Center

    O'Connor, Eileen

    2013-01-01

    With the advent of web 2.0 and virtual technologies and new understandings about learning within a global, networked environment, online course design has moved beyond the constraints of text readings, papers, and discussion boards. This next generation of online courses needs to dynamically and actively integrate the wide-ranging distribution of…

  10. A system dynamic modeling approach for evaluating municipal solid waste generation, landfill capacity and related cost management issues.

    PubMed

    Kollikkathara, Naushad; Feng, Huan; Yu, Danlin

    2010-11-01

    As planning for sustainable municipal solid waste management has to address several inter-connected issues such as landfill capacity, environmental impacts and financial expenditure, it becomes increasingly necessary to understand the dynamic nature of their interactions. A system dynamics approach designed here attempts to address some of these issues by fitting a model framework for Newark urban region in the US, and running a forecast simulation. The dynamic system developed in this study incorporates the complexity of the waste generation and management process to some extent which is achieved through a combination of simpler sub-processes that are linked together to form a whole. The impact of decision options on the generation of waste in the city, on the remaining landfill capacity of the state, and on the economic cost or benefit actualized by different waste processing options are explored through this approach, providing valuable insights into the urban waste-management process. PMID:20547450

  11. A system dynamic modeling approach for evaluating municipal solid waste generation, landfill capacity and related cost management issues

    SciTech Connect

    Kollikkathara, Naushad; Feng Huan; Yu Danlin

    2010-11-15

    As planning for sustainable municipal solid waste management has to address several inter-connected issues such as landfill capacity, environmental impacts and financial expenditure, it becomes increasingly necessary to understand the dynamic nature of their interactions. A system dynamics approach designed here attempts to address some of these issues by fitting a model framework for Newark urban region in the US, and running a forecast simulation. The dynamic system developed in this study incorporates the complexity of the waste generation and management process to some extent which is achieved through a combination of simpler sub-processes that are linked together to form a whole. The impact of decision options on the generation of waste in the city, on the remaining landfill capacity of the state, and on the economic cost or benefit actualized by different waste processing options are explored through this approach, providing valuable insights into the urban waste-management process.

  12. Identification and classification of dynamic event tree scenarios via possibilistic clustering: application to a steam generator tube rupture event.

    PubMed

    Mercurio, D; Podofillini, L; Zio, E; Dang, V N

    2009-11-01

    This paper illustrates a method to identify and classify scenarios generated in a dynamic event tree (DET) analysis. Identification and classification are carried out by means of an evolutionary possibilistic fuzzy C-means clustering algorithm which takes into account not only the final system states but also the timing of the events and the process evolution. An application is considered with regards to the scenarios generated following a steam generator tube rupture in a nuclear power plant. The scenarios are generated by the accident dynamic simulator (ADS), coupled to a RELAP code that simulates the thermo-hydraulic behavior of the plant and to an operators' crew model, which simulates their cognitive and procedures-guided responses. A set of 60 scenarios has been generated by the ADS DET tool. The classification approach has grouped the 60 scenarios into 4 classes of dominant scenarios, one of which was not anticipated a priori but was "discovered" by the classifier. The proposed approach may be considered as a first effort towards the application of identification and classification approaches to scenarios post-processing for real-scale dynamic safety assessments. PMID:19819366

  13. Nonlinear model dynamics for closed-system, constrained, maximal-entropy-generation relaxation by energy redistribution

    SciTech Connect

    Beretta, Gian Paolo

    2006-02-15

    We discuss a nonlinear model for relaxation by energy redistribution within an isolated, closed system composed of noninteracting identical particles with energy levels e{sub i} with i=1,2,...,N. The time-dependent occupation probabilities p{sub i}(t) are assumed to obey the nonlinear rate equations {tau} dp{sub i}/dt=-p{sub i} ln p{sub i}-{alpha}(t)p{sub i}-{beta}(t)e{sub i}p{sub i} where {alpha}(t) and {beta}(t) are functionals of the p{sub i}(t)'s that maintain invariant the mean energy E={sigma}{sub i=1}{sup N}e{sub i}p{sub i}(t) and the normalization condition 1={sigma}{sub i=1}{sup N}p{sub i}(t). The entropy S(t)=-k{sub B}{sigma}{sub i=1}{sup N}p{sub i}(t)ln p{sub i}(t) is a nondecreasing function of time until the initially nonzero occupation probabilities reach a Boltzmann-like canonical distribution over the occupied energy eigenstates. Initially zero occupation probabilities, instead, remain zero at all times. The solutions p{sub i}(t) of the rate equations are unique and well defined for arbitrary initial conditions p{sub i}(0) and for all times. The existence and uniqueness both forward and backward in time allows the reconstruction of the ancestral or primordial lowest entropy state. By casting the rate equations in terms not of the p{sub i}'s but of their positive square roots {radical}(p{sub i}), they unfold from the assumption that time evolution is at all times along the local direction of steepest entropy ascent or, equivalently, of maximal entropy generation. These rate equations have the same mathematical structure and basic features as the nonlinear dynamical equation proposed in a series of papers ending with G. P. Beretta, Found. Phys. 17, 365 (1987) and recently rediscovered by S. Gheorghiu-Svirschevski [Phys. Rev. A 63, 022105 (2001);63, 054102 (2001)]. Numerical results illustrate the features of the dynamics and the differences from the rate equations recently considered for the same problem by M. Lemanska and Z. Jaeger [Physica D 170, 72

  14. Electrolyte negative differential resistance, nanoparticle dynamics in nanopores, and nanobubble generation at nanoelectrodes

    NASA Astrophysics Data System (ADS)

    Luo, Long

    This dissertation presents experimental and computational investigations of electrolyte negative differential resistance, nanoparticle dynamics in nanopores, and nanobubble formation at nanoelectrodes. Chapter 1 provides an introduction to negative differential resistance and other nonlinear electrical responses in nanopores, an overview of resistive pulse analysis of nanoparticles using nanopores, and current nanobubble research. Chapter 2 describes the first example of electrolyte negative differential resistance (NDR) discovered in nanopores, where the current decreases as the voltage is increased. The NDR turn-on voltage was found to be tunable over a ˜1 V window by adjusting the applied external pressure. Finite-element simulations yielded predictions of the NDR behavior that are in qualitative agreement with the experimental observations. Chapter 3 presents the extension of NDR to an aqueous system and demonstrates the potential for chemical sensing based on NDR behavior. Solution pH and Ca2+ in the solution were separately employed as the stimulus to investigate the surface charge density dependence of the NDR behavior. The NDR turn-on voltage was found to be exceedingly sensitive to the nanopore surface charge density, suggesting possible analytical applications in detecting as few as several hundred of molecules. Chapter 4 discusses the technique of controlling the dynamics of single 8 nm diameter gold nanoparticles in nanopores, which is extended from traditional resistive pulse analysis of nanoparticles. A pressure was applied to balance electrokinetic forces acting on the charged Au nanoparticles as they translocate through a ˜10 nm diameter orifice at an electric field. This force balance provides a means to vary the velocity of nanoparticles by three orders of magnitude. Finite-element simulations yielded predictions in semiquantitative agreement with the experimental results. Chapter 5 reports the electrochemical generation of individual H 2

  15. Training the Next Generation of Scientists: System Dynamics Modeling of Chagas Disease (American Trypanosomiasis) transmission.

    NASA Astrophysics Data System (ADS)

    Goff, P.; Hulse, A.; Harder, H. R.; Pierce, L. A.; Rizzo, D.; Hanley, J.; Orantes, L.; Stevens, L.; Justi, S.; Monroy, C.

    2015-12-01

    A computational simulation has been designed as an investigative case study by high school students to introduce system dynamics modeling into high school curriculum. This case study approach leads users through the forensics necessary to diagnose an unknown disease in a Central American village. This disease, Chagas, is endemic to 21 Latin American countries. The CDC estimates that of the 110 million people living in areas with the disease, 8 million are infected, with as many as 300,000 US cases. Chagas is caused by the protozoan parasite, Trypanosoma cruzi, and is spread via blood feeding insect (vectors), that feed on vertebrates and live in crevasses in the walls and roofs of adobe homes. One-third of the infected people will develop chronic Chagas who are asymptomatic for years before their heart or GI tract become enlarged resulting in death. The case study has three parts. Students play the role of WHO field investigators and work collaboratively to: 1) use genetics to identify the host(s) and vector of the disease 2) use a STELLA™ SIR (Susceptible, Infected, Recovered) system dynamics model to study Chagas at the village scale and 3) develop management strategies. The simulations identify mitigation strategies known as Ecohealth Interventions (e.g., home improvements using local materials) to help stakeholders test and compare multiple optima. High school students collaborated with researchers from the University of Vermont, Loyola University and Universidad de San Carlos, Guatemala, working in labs, interviewing researchers, and incorporating mulitple field data as part of a NSF-funded multiyear grant. The model displays stable equilibria of hosts, vectors, and disease-states. Sensitivity analyses show measures of household condition and presence of vertebrates were significant leverage points, supporting other findings by the University research team. The village-scale model explores multiple solutions to disease mitigation for the purpose of producing

  16. Modular Object-Oriented Dynamic Learning Environment: What Open Source Has to Offer

    ERIC Educational Resources Information Center

    Antonenko, Pavlo; Toy, Serkan; Niederhauser, Dale

    2004-01-01

    Open source online learning environments have emerged and developed over the past 10 years. In this paper we will analyze the underlying philosophy and features of MOODLE based on the theoretical framework developed by Hannafin and Land (2000). Psychological, pedagogical, technological, cultural, and pragmatic foundations comprise the framework…

  17. Molecular dynamics of ion transport through the open conformation of a bacterial voltage-gated sodium channel

    PubMed Central

    Ulmschneider, Martin B.; Bagnéris, Claire; McCusker, Emily C.; DeCaen, Paul G.; Delling, Markus; Clapham, David E.; Ulmschneider, Jakob P.; Wallace, B. A.

    2013-01-01

    The crystal structure of the open conformation of a bacterial voltage-gated sodium channel pore from Magnetococcus sp. (NaVMs) has provided the basis for a molecular dynamics study defining the channel’s full ion translocation pathway and conductance process, selectivity, electrophysiological characteristics, and ion-binding sites. Microsecond molecular dynamics simulations permitted a complete time-course characterization of the protein in a membrane system, capturing the plethora of conductance events and revealing a complex mixture of single and multi-ion phenomena with decoupled rapid bidirectional water transport. The simulations suggest specific localization sites for the sodium ions, which correspond with experimentally determined electron density found in the selectivity filter of the crystal structure. These studies have also allowed us to identify the ion conductance mechanism and its relation to water movement for the NavMs channel pore and to make realistic predictions of its conductance properties. The calculated single-channel conductance and selectivity ratio correspond closely with the electrophysiology measurements of the NavMs channel expressed in HEK 293 cells. The ion translocation process seen in this voltage-gated sodium channel is clearly different from that exhibited by members of the closely related family of voltage-gated potassium channels and also differs considerably from existing proposals for the conductance process in sodium channels. These studies simulate sodium channel conductance based on an experimentally determined structure of a sodium channel pore that has a completely open transmembrane pathway and activation gate. PMID:23542377

  18. Peptide-induced membrane curvature in edge-stabilized open bilayers: a theoretical and molecular dynamics study.

    PubMed

    Pannuzzo, Martina; Raudino, Antonio; Böckmann, Rainer A

    2014-07-14

    Peptide- or protein-induced curvatures of lipid membranes may be studied in molecular dynamics (MD) simulations. In these, membranes are usually modeled as infinitely extended bilayers by using periodic boundary conditions. However, the enforced periodicity results in an underestimation of the bending power of peptides, unless the patch size is much larger than the induced curvature radii. In this letter, we propose a novel approach to evaluate the bending power of a given distribution and/or density of peptides based on the use of flat open-edged lipid patches. To ensure long-lived metastable structures, the patch rim is stabilized in MD simulations by a local enrichment with short-chain lipids. By combining the theory of continuum elastic media with MD simulations, we prove that open-edged patches evolve from a planar state to a closed vesicle, with a transition rate that strongly depends on the concentration of lipid soluble peptides. For close-to-critical values for the patch size and edge energy, the response to even small changes in peptide concentration adopts a transition-like behavior (buckling instability). The usage of open-edged membrane patches amplifies the bending power of peptides, thereby enabling the analysis of the structural properties of membrane-peptide systems. We applied the presented method to investigate the curvature induced by aggregating β -amyloid peptides, unraveling a strong sensitivity of membrane deformation to the peptide concentration. PMID:25028040

  19. Peptide-induced membrane curvature in edge-stabilized open bilayers: A theoretical and molecular dynamics study

    NASA Astrophysics Data System (ADS)

    Pannuzzo, Martina; Raudino, Antonio; Böckmann, Rainer A.

    2014-07-01

    Peptide- or protein-induced curvatures of lipid membranes may be studied in molecular dynamics (MD) simulations. In these, membranes are usually modeled as infinitely extended bilayers by using periodic boundary conditions. However, the enforced periodicity results in an underestimation of the bending power of peptides, unless the patch size is much larger than the induced curvature radii. In this letter, we propose a novel approach to evaluate the bending power of a given distribution and/or density of peptides based on the use of flat open-edged lipid patches. To ensure long-lived metastable structures, the patch rim is stabilized in MD simulations by a local enrichment with short-chain lipids. By combining the theory of continuum elastic media with MD simulations, we prove that open-edged patches evolve from a planar state to a closed vesicle, with a transition rate that strongly depends on the concentration of lipid soluble peptides. For close-to-critical values for the patch size and edge energy, the response to even small changes in peptide concentration adopts a transition-like behavior (buckling instability). The usage of open-edged membrane patches amplifies the bending power of peptides, thereby enabling the analysis of the structural properties of membrane-peptide systems. We applied the presented method to investigate the curvature induced by aggregating β -amyloid peptides, unraveling a strong sensitivity of membrane deformation to the peptide concentration.

  20. Laboratory convection experiments with internal, noncontact, microwave generated heating, applied to Earth's mantle dynamics

    NASA Astrophysics Data System (ADS)

    Limare, Angela; Surducan, Emanoil; di Giuseppe, Erika; Surducan, Vasile; Neamtu, Camelia; Vilella, Kenny; Fourel, Loic; Farnetani, Cinzia; Kaminski, Edouard; Jaupart, Claude

    2014-05-01

    The thermal evolution of terrestrial planets is controlled by secular cooling and internal heating due to the decay of radiogenic isotopes, two processes which are equivalent from the standpoint of convection dynamics. Few studies have been devoted to the intrinsic characteristics of this form of convection, which are dominated by instabilities of a single boundary layer and which involve a non-isentropic interior thermal structure. Laboratory studies of such convection have been plagued by considerable technical difficulties and have been mostly restricted to aqueous solutions with moderate values of the Prandtl number, contrary to planetary mantles. Here, we describe a new laboratory setup to generate internal heating in controlled conditions based on microwave (MW) absorption. The advantages of our technique include, but are not limited to: (1) a volumetric heat source that can be localized or distributed in space, (2) selectively heating part of the volume with time varying intensity and space distribution. Our tank prototype had horizontal dimensions of 30 cm × 30 cm and 5 cm height. A uniform and constant temperature was maintained at the upper boundary by an aluminium heat exchanger and adiabatic conditions were imposed at the tank base. Experimental fluids were hydroxyethylcellulose - water mixtures whose viscosities were varied within a wide range depending on concentration. Experimental Prandtl numbers were set at values larger than 100. Thermochromic Liquid Crystals (TLC) were used to visualize the temperature field, and the velocity field was determined using Particle Image Velocimetry (PIV). The Rayleigh-Roberts number was varied from 105 to 107. We also conducted numerical simulations in 3D cartesian geometry using Stag-3D (Tackley 1993) to reproduce the experimental conditions, including the tank aspect ratio and the temperature dependence of physical properties. We observed that convection is driven by cold descending plumes generated at the upper

  1. FeynDyn: A MATLAB program for fast numerical Feynman integral calculations for open quantum system dynamics on GPUs

    NASA Astrophysics Data System (ADS)

    Dattani, Nikesh S.

    2013-12-01

    This MATLAB program calculates the dynamics of the reduced density matrix of an open quantum system modeled either by the Feynman-Vernon model or the Caldeira-Leggett model. The user gives the program a Hamiltonian matrix that describes the open quantum system as if it were in isolation, a matrix of the same size that describes how that system couples to its environment, and a spectral distribution function and temperature describing the environment’s influence on it, in addition to the open quantum system’s initial density matrix and a grid of times. With this, the program returns the reduced density matrix of the open quantum system at all moments specified by that grid of times (or just the last moment specified by the grid of times if the user makes this choice). This overall calculation can be divided into two stages: the setup of the Feynman integral, and the actual calculation of the Feynman integral for time propagation of the density matrix. When this program calculates this propagation on a multi-core CPU, it is this propagation that is usually the rate-limiting step of the calculation, but when it is calculated on a GPU, the propagation is calculated so quickly that the setup of the Feynman integral can actually become the rate-limiting step. The overhead of transferring information from the CPU to the GPU and back seems to have a negligible effect on the overall runtime of the program. When the required information cannot fit on the GPU, the user can choose to run the entire program on a CPU. Catalogue identifier: AEPX_v1_0. Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEPX_v1_0.html. Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland. Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html. No. of lines in distributed program, including test data, etc.: 703. No. of bytes in distributed program, including test data, etc.: 11026. Distribution format: tar.gz. Programming

  2. Analysis of supercritical CO{sub 2} cycle control strategies and dynamic response for Generation IV Reactors.

    SciTech Connect

    Moisseytsev, A.; Sienicki, J. J.

    2011-04-12

    efficiency of 49.3 %. The other approach involves reducing the minimum cycle pressure significantly below the critical pressure such that the temperature drop in the turbine is increased while the minimum cycle temperature is maintained above the critical temperature to prevent the formation of a liquid phase. The latter approach also involves the addition of a precooler and a third compressor before the main compressor to retain the benefits of compression near the critical point with the main compressor. For a minimum cycle pressure of 1 MPa, a cycle efficiency of 49.5% is achieved. Either approach opens up the door to applying the SCO{sub 2} cycle to the VHTR. In contrast, the SFR system typically has a core outlet-inlet temperature difference of about 150 C such that the standard recompression cycle is ideally suited for direct application to the SFR. The ANL Plant Dynamics Code has been modified for application to the VHTR and SFR when the reactor side dynamic behavior is calculated with another system level computer code such as SAS4A/SYSSYS-1 in the SFR case. The key modification involves modeling heat exchange in the RHX, accepting time dependent tabular input from the reactor code, and generating time dependent tabular input to the reactor code such that both the reactor and S-CO{sub 2} cycle sides can be calculated in a convergent iterative scheme. This approach retains the modeling benefits provided by the detailed reactor system level code and can be applied to any reactor system type incorporating a S-CO{sub 2} cycle. This approach was applied to the particular calculation of a scram scenario for a SFR in which the main and intermediate sodium pumps are not tripped and the generator is not disconnected from the electrical grid in order to enhance heat removal from the reactor system thereby enhancing the cooldown rate of the Na-to-CO{sub 2} RHX. The reactor side is calculated with SAS4A/SASSYS-1 while the S-CO{sub 2} cycle is calculated with the Plant Dynamics

  3. Coherent anti-Stokes Raman scattering study of the dynamics of a multipolar plasma generator

    NASA Astrophysics Data System (ADS)

    Lefebvre, M.; Péalat, M.; Taran, J.-P.; Bacal, M.; Berlemont, P.; Skinner, D. A.; Bretagne, J.; Hutcheon, R. J.

    1992-03-01

    A Coherent Anti-Stokes Raman Spectroscopy (CARS) study of the hydrogen plasma generated by a discharge with magnetic multipolar confinement has been conducted at pressures in the range 0.5-5 Pa. The steady-state radial distribution of the rovibrational populations has been measured. The vibrational temperature is always uniformly distributed and so is the rotational temperature at the lower pressures, while a strong gradient is seen at 5 Pa for the rotation. Time-resolved measurements with the discharge operated in a square-pulse mode give additional insight into the dynamics of the discharge. Some results are compared with the predictions of two computer models of the plasma kinetics. We observe H{2} vibrational excitation by the Joule-heated filament alone (in the absence of the discharge) and show it to be caused primarily by the confined discharge between the filament and its cold positive copper connector. Another interpretation of the presence of vibrationally excited H{2} by recombinative desorption (Hall R.I. et al., Phys. Rev. Lett. 60 (1988) 337) is not comforted by our results, within instrumental sensitivity. The densities of the first rotational levels that the ortho and para forms of H{2} have different electron collisional cross-sections. Under pulsed excitation, the vibrational temperature rises on a time scale of 1-2 ms in agreement with numerical predictions. At switch-off, we show by matching the experimental and theoretical decays that vibrational state v=1 survives 16± 5 wall collisions; meanwhile, the rotation cools very rapidly, probably because of superelastic electronic collisions.

  4. easyHealthApps: e-Health Apps dynamic generation for smartphones & tablets.

    PubMed

    Paschou, Mersini; Sakkopoulos, Evangelos; Tsakalidis, Athanasios

    2013-06-01

    Mobile phones and especially smartphones have been embraced by a rapidly increasing number of people worldwide and this trend is expected to evolve even more in the years to come. There are numerous smartphone Apps that record critical medical data in an effort to solve a particular health issue each time. We studied such applications and not surprisingly, we have found that development and design effort is often repeated. Software patterns have been detected to exist, however re-usability has not been enforced. This leads to lost programming manpower and to increased probability of repeating bugs in Apps. Moreover, at the moment smartphone e-Health Apps demand time, effort and costs for development. Unfortunately even simple data recording Apps are practically impossible to be produced by multiple health domain users who are not developers. In this work, we propose, design and implement a simple and integrated solution which gives healthcare professionals and researchers the ability to create their own data intensive smartphone applications, independent of the desired healthcare domain. The proposed approach applies efficient software techniques that hide development from the users and enable App creation through a simple Web User Interface. The Apps produced are in native format and it is possible to dynamically receive m-Health business logic and the chosen UI. Evaluation of the proposed solution has shown that the generated Apps are functionally and UI equivalent to human-coded Apps according to a number of comparison parameters. Furthermore, e-Health professionals show particular interest in developing Apps on their own for a particular domain they focus on. PMID:23666429

  5. Late Quaternary sedimentary dynamics in Western Amazonia: Implications for the origin of open vegetation/forest contrasts

    NASA Astrophysics Data System (ADS)

    Rossetti, D. F.; Bertani, T. C.; Zani, H.; Cremon, E. H.; Hayakawa, E. H.

    2012-12-01

    depositional dynamics through time, a process that had an immediate effect on the development of large open vegetation patches intermingled with the Amazonian rainforest.

  6. Mechanisms of mindfulness: The dynamics of affective adaptation during open monitoring.

    PubMed

    Uusberg, Helen; Uusberg, Andero; Talpsep, Teri; Paaver, Marika

    2016-07-01

    Mindfulness - the nonjudgmental awareness of the present experience - is thought to facilitate affective adaptation through increased exposure to emotions and faster extinction of habitual responses. To test this framework, the amplification of the Late Positive Potential (LPP) by negative relative to neutral images was analyzed across stimulus repetitions while 37 novices performed an open monitoring mindfulness exercise. Compared to two active control conditions where attention was either diverted to a distracting task or the stimuli were attended without mindfulness instructions, open monitoring enhanced the initial LPP response to negative stimuli, indicating increased emotional exposure. Across successive repetitions, mindfulness reduced and ultimately removed the affective LPP amplification, suggesting extinction of habitual emotional reactions. This effect arose from reduced negative as well enlarged neutral LPPs. Unlike stimuli from control conditions, the images previously viewed with mindfulness instructions did not elicit affective LPP amplification during subsequent re-exposure, suggesting reconsolidation of stimulus meaning. PMID:27211913

  7. The electron-furfural scattering dynamics for 63 energetically open electronic states.

    PubMed

    da Costa, Romarly F; do N Varella, Márcio T; Bettega, Márcio H F; Neves, Rafael F C; Lopes, Maria Cristina A; Blanco, Francisco; García, Gustavo; Jones, Darryl B; Brunger, Michael J; Lima, Marco A P

    2016-03-28

    We report on integral-, momentum transfer- and differential cross sections for elastic and electronically inelastic electron collisions with furfural (C5H4O2). The calculations were performed with two different theoretical methodologies, the Schwinger multichannel method with pseudopotentials (SMCPP) and the independent atom method with screening corrected additivity rule (IAM-SCAR) that now incorporates a further interference (I) term. The SMCPP with N energetically open electronic states (N(open)) at either the static-exchange (N(open) ch-SE) or the static-exchange-plus-polarisation (N(open) ch-SEP) approximation was employed to calculate the scattering amplitudes at impact energies lying between 5 eV and 50 eV, using a channel coupling scheme that ranges from the 1ch-SEP up to the 63ch-SE level of approximation depending on the energy considered. For elastic scattering, we found very good overall agreement at higher energies among our SMCPP cross sections, our IAM-SCAR+I cross sections and the experimental data for furan (a molecule that differs from furfural only by the substitution of a hydrogen atom in furan with an aldehyde functional group). This is a good indication that our elastic cross sections are converged with respect to the multichannel coupling effect for most of the investigated intermediate energies. However, although the present application represents the most sophisticated calculation performed with the SMCPP method thus far, the inelastic cross sections, even for the low lying energy states, are still not completely converged for intermediate and higher energies. We discuss possible reasons leading to this discrepancy and point out what further steps need to be undertaken in order to improve the agreement between the calculated and measured cross sections. PMID:27036451

  8. The Interaction Potential of an Open Nanotube and its Permeability: Molecular Dynamics Simulation

    NASA Astrophysics Data System (ADS)

    Bubenchikov, Mikhail A.; Potekaev, Alexander I.; Bubenchikov, Alexey M.; Usenko, Olesya V.; Malozemov, Alexander V.; Tarasov, Egor A.

    2016-02-01

    The integration of the modified LJ-potential allowed revealing the universal effect of the open carbon tube on the molecular objects moving within or proximate to the tube. There has been established that there are modes of the molecule motion without the energy exchange with the atoms of the carbon framing, under which the moving molecules are subjected to the considerable activation in the tube. The potential holes being the sorption zones in fact are localized.

  9. Method for generating all uniform π -pulse sequences used in deterministic dynamical decoupling

    NASA Astrophysics Data System (ADS)

    Qi, Haoyu; Dowling, Jonathan P.

    2015-09-01

    Dynamical decoupling has been actively investigated since Viola first suggested using a pulse sequence to protect a qubit from decoherence. Since then, many schemes of dynamical decoupling have been proposed to achieve high-order suppression, both analytically and numerically. However, hitherto, there has not been a systematic framework to understand all existing uniform π -pulse dynamical decoupling schemes. In this report, we use the projection pulse sequences as basic building blocks and concatenation as a way to combine them. We derived a concatenated-projection dynamical decoupling, a framework in which we can systematically construct pulse sequences to achieve arbitrary high suppression order. All previously known uniform dynamical decoupling sequences using π pulse can be fit into this framework. Understanding uniform dynamical decoupling as successive projections on the Hamiltonian will also give insights on how to invent new ways to construct better pulse sequences.

  10. Automatic Generation of Wide Dynamic Range Image without Pseudo-Edge Using Integration of Multi-Steps Exposure Images

    NASA Astrophysics Data System (ADS)

    Migiyama, Go; Sugimura, Atsuhiko; Osa, Atsushi; Miike, Hidetoshi

    Recently, digital cameras are offering technical advantages rapidly. However, the shot image is different from the sight image generated when that scenery is seen with the naked eye. There are blown-out highlights and crushed blacks in the image that photographed the scenery of wide dynamic range. The problems are hardly generated in the sight image. These are contributory cause of difference between the shot image and the sight image. Blown-out highlights and crushed blacks are caused by the difference of dynamic range between the image sensor installed in a digital camera such as CCD and CMOS and the human visual system. Dynamic range of the shot image is narrower than dynamic range of the sight image. In order to solve the problem, we propose an automatic method to decide an effective exposure range in superposition of edges. We integrate multi-step exposure images using the method. In addition, we try to erase pseudo-edges using the process to blend exposure values. Afterwards, we get a pseudo wide dynamic range image automatically.

  11. Energy localization in an anharmonic twist-opening model of DNA dynamics.

    PubMed

    Tabi, Conrad Bertrand

    2010-10-20

    Energy localization is investigated in the framework of the anharmonic twist-opening model proposed by Cocco and Monasson. This model includes the coupling between opening and twist that result from the helicoidal geometry of B-DNA. I first reduce the corresponding two-component model to its amplitude equations, which have the form of coupled discrete nonlinear Schrödinger (DNLS) equations, and I perform the linear stability analysis of the plane waves, solutions of the coupled DNLS equations. It is shown that the stability criterion deeply depends on the stiffness of the molecule. Numerical simulations are carried out in order to verify analytical predictions. It results that increasing the value of the molecule stiffness makes the energy patterns long-lived and highly localized. This can be used to explain the way enzymes concentrate energy on specific sequences of DNA for the base-pairs to be broken. The role of those enzymes could therefore be to increase the stiffness of closed regions of DNA at the boundaries of an open state. PMID:21386590

  12. Libra: An open-Source "methodology discovery" library for quantum and classical dynamics simulations.

    PubMed

    Akimov, Alexey V

    2016-06-30

    The "methodology discovery" library for quantum and classical dynamics simulations is presented. One of the major foci of the code is on nonadiabatic molecular dynamics simulations with model and atomistic Hamiltonians treated on the same footing. The essential aspects of the methodology, design philosophy, and implementation are discussed. The code capabilities are demonstrated on a number of model and atomistic test cases. It is demonstrated how the library can be used to study methodologies for quantum and classical dynamics, as well as a tool for performing detailed atomistic studies of nonadiabatic processes in molecular systems. The source code and additional information are available on the Web at http://www.acsu.buffalo.edu/~alexeyak/libra/index.html. © 2016 Wiley Periodicals, Inc. PMID:27016373

  13. Dynamic fracture-toughness evaluation by measurement of CTOD (Crack Tip Opening Displacement). Interim report

    SciTech Connect

    Sharpe, W.N.; Douglas, A.S.; Shapiro, J.M.

    1988-03-15

    Quantification of the dynamic fracture toughness of structural materials is essential to a wide range of problems - from nuclear accidents to ordnance applications. However, the difficulties associated with accurate measurements of cracks under dynamic loading are considerable. Thus there are no standardized procedures and few reliable results. This work describes a systematic study of the dynamic fracture toughness of SAE-01 tool steel, 4340 and HY100 steels and a tungsten, using the ISDG (Interferometric Strain/Displacement Gage) system which has very-high-frequency resolution. The major advantage of the method is that information is obtained very close to the crack tip, so that stress wave loading effects are accounted for. A detailed error analysis gives an uncertainty of -10% to +20% in the determination of fracture toughness, which compares with + or - 20% for published work.

  14. Hybrid MPI/OpenMP Implementation of the ORAC Molecular Dynamics Program for Generalized Ensemble and Fast Switching Alchemical Simulations.

    PubMed

    Procacci, Piero

    2016-06-27

    We present a new release (6.0β) of the ORAC program [Marsili et al. J. Comput. Chem. 2010, 31, 1106-1116] with a hybrid OpenMP/MPI (open multiprocessing message passing interface) multilevel parallelism tailored for generalized ensemble (GE) and fast switching double annihilation (FS-DAM) nonequilibrium technology aimed at evaluating the binding free energy in drug-receptor system on high performance computing platforms. The production of the GE or FS-DAM trajectories is handled using a weak scaling parallel approach on the MPI level only, while a strong scaling force decomposition scheme is implemented for intranode computations with shared memory access at the OpenMP level. The efficiency, simplicity, and inherent parallel nature of the ORAC implementation of the FS-DAM algorithm, project the code as a possible effective tool for a second generation high throughput virtual screening in drug discovery and design. The code, along with documentation, testing, and ancillary tools, is distributed under the provisions of the General Public License and can be freely downloaded at www.chim.unifi.it/orac . PMID:27231982

  15. Beyond mean-field dynamics in open Bose-Hubbard chains

    NASA Astrophysics Data System (ADS)

    Witthaut, D.; Trimborn, F.; Hennig, H.; Kordas, G.; Geisel, T.; Wimberger, S.

    2011-06-01

    We investigate the effects of phase noise and particle loss on the dynamics of a Bose-Einstein condensate in an optical lattice. Starting from the many-body master equation, we discuss the applicability of generalized mean-field approximations in the presence of dissipation as well as methods to simulate quantum effects beyond mean field by including higher-order correlation functions. It is shown that localized particle dissipation leads to surprising dynamics, as it can suppress decay and restore the coherence of a Bose-Einstein condensate. These effects can be applied to engineer coherent structures such as stable discrete breathers and dark solitons.

  16. The EF-Hand Ca2+ Binding Protein MICU Choreographs Mitochondrial Ca2+ Dynamics in Arabidopsis[OPEN

    PubMed Central

    Carraretto, Luca; Teardo, Enrico; Cendron, Laura; Füßl, Magdalena; Doccula, Fabrizio G.; Szabò, Ildikò

    2015-01-01

    Plant organelle function must constantly adjust to environmental conditions, which requires dynamic coordination. Ca2+ signaling may play a central role in this process. Free Ca2+ dynamics are tightly regulated and differ markedly between the cytosol, plastid stroma, and mitochondrial matrix. The mechanistic basis of compartment-specific Ca2+ dynamics is poorly understood. Here, we studied the function of At-MICU, an EF-hand protein of Arabidopsis thaliana with homology to constituents of the mitochondrial Ca2+ uniporter machinery in mammals. MICU binds Ca2+ and localizes to the mitochondria in Arabidopsis. In vivo imaging of roots expressing a genetically encoded Ca2+ sensor in the mitochondrial matrix revealed that lack of MICU increased resting concentrations of free Ca2+ in the matrix. Furthermore, Ca2+ elevations triggered by auxin and extracellular ATP occurred more rapidly and reached higher maximal concentrations in the mitochondria of micu mutants, whereas cytosolic Ca2+ signatures remained unchanged. These findings support the idea that a conserved uniporter system, with composition and regulation distinct from the mammalian machinery, mediates mitochondrial Ca2+ uptake in plants under in vivo conditions. They further suggest that MICU acts as a throttle that controls Ca2+ uptake by moderating influx, thereby shaping Ca2+ signatures in the matrix and preserving mitochondrial homeostasis. Our results open the door to genetic dissection of mitochondrial Ca2+ signaling in plants. PMID:26530087

  17. An Open-Access Educational Tool for Teaching Motion Dynamics in Multi-Axis Servomotor Control

    ERIC Educational Resources Information Center

    Rivera-Guillen, J. R.; de Jesus Rangel-Magdaleno, J.; de Jesus Romero-Troncoso, R.; Osornio-Rios, R. A.; Guevara-Gonzalez, R. G.

    2012-01-01

    Servomotors are widely used in computerized numerically controlled (CNC) machines, hence motion control is a major topic covered in undergraduate/graduate engineering courses. Despite the fact that several syllabi include the motion dynamics topic in their courses, there are neither suitable tools available for designing and simulating multi-axis…

  18. Robust Generation of Dynamic Data Structure Visualizations with Multiple Interaction Approaches

    ERIC Educational Resources Information Center

    Cross, James H., II; Hendrix, T. Dean; Umphress, David A.; Barowski, Larry A.; Jain, Jhilmil; Montgomery, Lacey N.

    2009-01-01

    jGRASP has three integrated approaches for interacting with its dynamic viewers for data structures: debugger, workbench, and text-based interactions that allow individual Java statements and expressions to be executed/evaluated. These approaches can be used together to provide a complementary set of interactions with the dynamic viewers. Data…

  19. Computational model for calculating the dynamical behaviour of generators caused by unbalanced magnetic pull and experimental validation

    NASA Astrophysics Data System (ADS)

    Pennacchi, Paolo

    2008-04-01

    The modelling of the unbalanced magnetic pull (UMP) in generators and the experimental validation of the proposed method are presented in this paper. The UMP is one of the most remarkable effects of electromechanical interactions in rotating machinery. As a consequence of the rotor eccentricity, the imbalance of the electromagnetic forces acting between rotor and stator generates a net radial force. This phenomenon can be avoided by means of a careful assembly and manufacture in small and stiff machines, like electrical motors. On the contrary, the eccentricity of the active part of the rotor with respect to the stator is unavoidable in big generators of power plants, because they operate above their first critical speed and are supported by oil-film bearings. In the first part of the paper, a method aimed to calculate the UMP force is described. This model is more general than those available in literature, which are limited to circular orbits. The model is based on the actual position of the rotor inside the stator, therefore on the actual air-gap distribution, regardless of the orbit type. The closed form of the nonlinear UMP force components is presented. In the second part, the experimental validation of the proposed model is presented. The dynamical behaviour in the time domain of a steam turbo-generator of a power plant is considered and it is shown that the model is able to reproduce the dynamical effects due to the excitation of the magnetic field in the generator.

  20. Dynamical origin of near- and below-threshold harmonic generation of Cs in an intense mid-infrared laser field

    PubMed Central

    Li, Peng-Cheng; Sheu, Yae-Lin; Laughlin, Cecil; Chu, Shih-I

    2015-01-01

    Near- and below-threshold harmonic generation provides a potential approach to generate vacuum-ultraviolet frequency comb. However, the dynamical origin of in these lower harmonics is less understood and largely unexplored. Here we perform an ab initio quantum study of the near- and below-threshold harmonic generation of caesium (Cs) atoms in an intense 3,600-nm mid-infrared laser field. Combining with a synchrosqueezing transform of the quantum time-frequency spectrum and an extended semiclassical analysis, the roles of multiphoton and multiple rescattering trajectories on the near- and below-threshold harmonic generation processes are clarified. We find that the multiphoton-dominated trajectories only involve the electrons scattered off the higher part of the combined atom-field potential followed by the absorption of many photons in near- and below-threshold regime. Furthermore, only the near-resonant below-threshold harmonic is exclusive to exhibit phase locked features. Our results shed light on the dynamic origin of the near- and below-threshold harmonic generation. PMID:25990452