Science.gov

Sample records for elastic network modeling

  1. New generation of elastic network models.

    PubMed

    López-Blanco, José Ramón; Chacón, Pablo

    2016-04-01

    The intrinsic flexibility of proteins and nucleic acids can be grasped from remarkably simple mechanical models of particles connected by springs. In recent decades, Elastic Network Models (ENMs) combined with Normal Model Analysis widely confirmed their ability to predict biologically relevant motions of biomolecules and soon became a popular methodology to reveal large-scale dynamics in multiple structural biology scenarios. The simplicity, robustness, low computational cost, and relatively high accuracy are the reasons behind the success of ENMs. This review focuses on recent advances in the development and application of ENMs, paying particular attention to combinations with experimental data. Successful application scenarios include large macromolecular machines, structural refinement, docking, and evolutionary conservation. PMID:26716577

  2. Adaptive elastic networks as models of supercooled liquids

    NASA Astrophysics Data System (ADS)

    Yan, Le; Wyart, Matthieu

    2015-08-01

    The thermodynamics and dynamics of supercooled liquids correlate with their elasticity. In particular for covalent networks, the jump of specific heat is small and the liquid is strong near the threshold valence where the network acquires rigidity. By contrast, the jump of specific heat and the fragility are large away from this threshold valence. In a previous work [Proc. Natl. Acad. Sci. USA 110, 6307 (2013), 10.1073/pnas.1300534110], we could explain these behaviors by introducing a model of supercooled liquids in which local rearrangements interact via elasticity. However, in that model the disorder characterizing elasticity was frozen, whereas it is itself a dynamic variable in supercooled liquids. Here we study numerically and theoretically adaptive elastic network models where polydisperse springs can move on a lattice, thus allowing for the geometry of the elastic network to fluctuate and evolve with temperature. We show numerically that our previous results on the relationship between structure and thermodynamics hold in these models. We introduce an approximation where redundant constraints (highly coordinated regions where the frustration is large) are treated as an ideal gas, leading to analytical predictions that are accurate in the range of parameters relevant for real materials. Overall, these results lead to a description of supercooled liquids, in which the distance to the rigidity transition controls the number of directions in phase space that cost energy and the specific heat.

  3. Towards synthetic molecular motors: a model elastic-network study

    NASA Astrophysics Data System (ADS)

    Sarkar, Amartya; Flechsig, Holger; Mikhailov, Alexander S.

    2016-04-01

    Protein molecular motors play a fundamental role in biological cells and development of their synthetic counterparts is a major challenge. Here, we show how a model motor system with the operation mechanism resembling that of muscle myosin can be designed at the concept level, without addressing the implementation aspects. The model is constructed as an elastic network, similar to the coarse-grained descriptions used for real proteins. We show by numerical simulations that the designed synthetic motor can operate as a deterministic or Brownian ratchet and that there is a continuous transition between such two regimes. The motor operation under external load, approaching the stall condition, is also analysed.

  4. Coarse-graining of proteins based on elastic network models

    NASA Astrophysics Data System (ADS)

    Sinitskiy, Anton V.; Voth, Gregory A.

    2013-08-01

    To simulate molecular processes on biologically relevant length- and timescales, coarse-grained (CG) models of biomolecular systems with tens to even hundreds of residues per CG site are required. One possible way to build such models is explored in this article: an elastic network model (ENM) is employed to define the CG variables. Free energy surfaces are approximated by Taylor series, with the coefficients found by force-matching. CG potentials are shown to undergo renormalization due to roughness of the energy landscape and smoothing of it under coarse-graining. In the case study of hen egg-white lysozyme, the entropy factor is shown to be of critical importance for maintaining the native structure, and a relationship between the proposed ENM-mode-based CG models and traditional CG-bead-based models is discussed. The proposed approach uncovers the renormalizable character of CG models and offers new opportunities for automated and computationally efficient studies of complex free energy surfaces.

  5. Elastic Network Models are Robust to Variations in Formalism.

    PubMed

    Leioatts, Nicholas; Romo, Tod D; Grossfield, Alan

    2012-07-10

    Understanding the functions of biomolecules requires insight not only from structures, but from dynamics as well. Often, the most interesting processes occur on time scales too slow for exploration by conventional molecular dynamics (MD) simulations. For this reason, alternative computational methods such as elastic network models (ENMs) have become increasingly popular. These simple, coarse-grained models represent molecules as beads connected by harmonic springs; the system's motions are solved analytically by normal mode analysis. In the past few years, many different formalisms for performing ENM calculations have emerged, and several have been optimized using all-atom MD simulations. In contrast to other studies, we have compared the various formalisms in a systematic, quantitative way. In this study, we optimize many ENM functional forms using a uniform dataset containing only long (> 1 μs) all-atom MD simulations. Our results show that all models once optimized produce spring constants for immediate neighboring residues that are orders of magnitude stiffer than more distal contacts. In addition, the statistical significance of ENM performance varied with model resolution. We also show that fitting long trajectories does not improve ENM performance due to a problem inherent in all network models tested: they underestimate the relative importance of the most concerted motions. Finally, we characterize ENMs' resilience by tessellating the parameter space to show that broad ranges of parameters produce similar quality predictions. Taken together our data reveals that choice of spring function and parameters are not vital to performance of a network model and that simple parameters can by derived "by hand" when no data is available for fitting, thus illustrating the robustness of these models. PMID:22924033

  6. Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence

    PubMed Central

    Isami, Shuhei; Sakamoto, Naoaki; Nishimori, Hiraku; Awazu, Akinori

    2015-01-01

    Simple elastic network models of DNA were developed to reveal the structure-dynamics relationships for several nucleotide sequences. First, we propose a simple all-atom elastic network model of DNA that can explain the profiles of temperature factors for several crystal structures of DNA. Second, we propose a coarse-grained elastic network model of DNA, where each nucleotide is described only by one node. This model could effectively reproduce the detailed dynamics obtained with the all-atom elastic network model according to the sequence-dependent geometry. Through normal-mode analysis for the coarse-grained elastic network model, we exhaustively analyzed the dynamic features of a large number of long DNA sequences, approximately ∼150 bp in length. These analyses revealed positive correlations between the nucleosome-forming abilities and the inter-strand fluctuation strength of double-stranded DNA for several DNA sequences. PMID:26624614

  7. Robust elastic network model: A general modeling for precise understanding of protein dynamics.

    PubMed

    Kim, Min Hyeok; Lee, Byung Ho; Kim, Moon Ki

    2015-06-01

    In the study of protein dynamics relevant to functions, normal mode analysis based on elastic network models (ENMs) has become popular. These models are usually validated by comparing the calculated atomic fluctuation for a single protein in a vacuum to experimental temperature factors in the crystal packing state. Without reflecting the crystal packing effect, in addition, their arbitrary assignment of spring constants leads to inaccurate simulation results, yielding a low correlation of the B-factor. To overcome this limitation, we propose a robust elastic network model (RENM) that not only considers the crystalline effect by using symmetric constraint information but also uses lumped masses and specific spring constants based on the type of amino acids and chemical interactions, respectively. Simulation results with more than 500 protein structures verify qualitatively and quantitatively that one can obtain the better correlation of the B-factor by RENM without additional computational burden. Moreover, an optimal spring constant in physical units (dyne/cm) is quantitatively determined as a function of the temperature at 100 and 290K, which enables us to predict the atomic fluctuations and vibrational density of states (VDOS) without a fitting process. The additional investigation of 80 high-resolution crystal structures with anisotropic displacement parameters (ADPs) indicates that RENM could give a full description of vibrational characteristics of individual residues in proteins. PMID:25891099

  8. Efficient perturbation analysis of elastic network models - Application to acetylcholinesterase of T. californica

    NASA Astrophysics Data System (ADS)

    Hamacher, K.

    2010-09-01

    Elastic network models in their different flavors have become useful models for the dynamics and functions of biomolecular systems such as proteins and their complexes. Perturbation to the interactions occur due to randomized and fixated changes (in molecular evolution) or designed modifications of the protein structures (in bioengineering). These perturbations are modifications in the topology and the strength of the interactions modeled by the elastic network models. We discuss how a naive approach to compute properties for a large number of perturbed structures and interactions by repeated diagonalization can be replaced with an identity found in linear algebra. We argue about the computational complexity and discuss the advantages of the protocol. We apply the proposed algorithm to the acetylcholinesterase, a well-known enzyme in neurobiology, and show how one can gain insight into the "breathing dynamics" of a structural funnel necessary for the function of the protein. The computational speed-up was a 60-fold increase in this example.

  9. Application of Elastic Network Models to Proteins in the Crystalline State

    PubMed Central

    Riccardi, Demian; Cui, Qiang; Phillips, George N.

    2009-01-01

    Abstract Normal mode analysis using elastic network models has grown popular for probing the low-frequency collective dynamics of proteins and other biomolecular assemblies. In most previous studies, these models were validated by comparing calculated atomic fluctuations for isolated proteins with experimental temperature factors determined in the crystalline state, although there were also hints that including crystal contacts in the calculations has an impact on the comparison. In this study, a set of 83 ultra-high resolution crystal structures with experimentally determined anisotropic displacement parameters is used to evaluate several Cα-based elastic network models that either ignore or treat the crystal environment in different ways; the latter include using periodic boundary conditions defined with respect to the asymmetric unit or the primitive unit cell as well as using the Born-von Kármán boundary condition that accounts for lattice vibrations. For all elastic network models, treating the crystal environment leads to better agreement with experimental anisotropic displacement parameters with the Born-von Kármán boundary condition giving the best agreement. Atomic correlations over the entire protein are clearly affected by the presence of the crystal contacts and fairly sensitive to the way that the crystal environment is treated. These observations highlight the importance of properly treating the protein system in an environment consistent with experiment when either evaluating approximate protein models or using approximate dynamic models in structural refinement application types. Finally, investigation of the scaling behaviors of the cumulative density of states and the heat capacity indicates that there are still gaps between simplified elastic models and all-atom models for proteins. PMID:19167297

  10. An improved scheduled traffic model utilizing bandwidth splitting in elastic optical networks

    NASA Astrophysics Data System (ADS)

    Vyas, Upama; Prakash, Shashi

    2016-07-01

    The surge of traffic in today's networks gave birth to elastic optical networking paradigm. In this paper, first we propose to use the scheduled traffic model (STM) in elastic optical networks (EONs) to ensure guaranteed availability of resources to demands which enter into the network with a predetermined start and end times. In optical networks, such demands are referred to as scheduled lightpath demands (SLDs). To increase the amount of bandwidth accepted in network, next we introduce a time aware routing and spectrum assignment (TA-RSA) approach. We observed that provisioning of bulky SLDs has become more challenging in EONs due to enforcement of RSA constraints. To address this challenge, we improve the proposed STM and designed three heuristics for its implementation in EONs. In this work, we collectively refer to these heuristics as bandwidth segmented RSA (BSRSA). The improved STM (iSTM) allows splitting of SLDs in bandwidth dimension by utilizing the knowledge of attributes viz. demand holding time, overlapping in time and bandwidth requested by SLDs. Our numerical results show that BSRSA consistently outperformed over TA-RSA under all distinctive experimental cases that we considered and achieved fairness in serving heterogeneous bandwidth SLDs. The impact of splitting on the number and capacity of transponders at nodes is also gauged. It is observed that ingenious splitting of demands increases the number of resources (on links and nodes) used, and their utilization, leading to an increase in bandwidth accepted in the network.

  11. A multiscale modelling of bone ultrastructure elastic proprieties using finite elements simulation and neural network method.

    PubMed

    Barkaoui, Abdelwahed; Tlili, Brahim; Vercher-Martínez, Ana; Hambli, Ridha

    2016-10-01

    Bone is a living material with a complex hierarchical structure which entails exceptional mechanical properties, including high fracture toughness, specific stiffness and strength. Bone tissue is essentially composed by two phases distributed in approximately 30-70%: an organic phase (mainly type I collagen and cells) and an inorganic phase (hydroxyapatite-HA-and water). The nanostructure of bone can be represented throughout three scale levels where different repetitive structural units or building blocks are found: at the first level, collagen molecules are arranged in a pentameric structure where mineral crystals grow in specific sites. This primary bone structure constitutes the mineralized collagen microfibril. A structural organization of inter-digitating microfibrils forms the mineralized collagen fibril which represents the second scale level. The third scale level corresponds to the mineralized collagen fibre which is composed by the binding of fibrils. The hierarchical nature of the bone tissue is largely responsible of their significant mechanical properties; consequently, this is a current outstanding research topic. Scarce works in literature correlates the elastic properties in the three scale levels at the bone nanoscale. The main goal of this work is to estimate the elastic properties of the bone tissue in a multiscale approach including a sensitivity analysis of the elastic behaviour at each length scale. This proposal is achieved by means of a novel hybrid multiscale modelling that involves neural network (NN) computations and finite elements method (FEM) analysis. The elastic properties are estimated using a neural network simulation that previously has been trained with the database results of the finite element models. In the results of this work, parametric analysis and averaged elastic constants for each length scale are provided. Likewise, the influence of the elastic constants of the tissue constituents is also depicted. Results highlight

  12. An elastic network model based on the structure of the red blood cell membrane skeleton.

    PubMed Central

    Hansen, J C; Skalak, R; Chien, S; Hoger, A

    1996-01-01

    A finite element network model has been developed to predict the macroscopic elastic shear modulus and the area expansion modulus of the red blood cell (RBC) membrane skeleton on the basis of its microstructure. The topological organization of connections between spectrin molecules is represented by the edges of a random Delaunay triangulation, and the elasticity of an individual spectrin molecule is represented by the spring constant, K, for a linear spring element. The model network is subjected to deformations by prescribing nodal displacements on the boundary. The positions of internal nodes are computed by the finite element program. The average response of the network is used to compute the shear modulus (mu) and area expansion modulus (kappa) for the corresponding effective continuum. For networks with a moderate degree of randomness, this model predicts mu/K = 0.45 and kappa/K = 0.90 in small deformations. These results are consistent with previous computational models and experimental estimates of the ratio mu/kappa. This model also predicts that the elastic moduli vary by 20% or more in networks with varying degrees of randomness. In large deformations, mu increases as a cubic function of the extension ratio lambda 1, with mu/K = 0.62 when lambda 1 = 1.5. Images FIGURE 1 FIGURE 2 FIGURE 3 FIGURE 4 FIGURE 7 FIGURE 8 FIGURE 9 FIGURE 10 FIGURE 11 FIGURE 12 FIGURE 13 FIGURE 14 FIGURE 15 FIGURE 16 FIGURE 17 FIGURE 18 FIGURE 20 FIGURE A1 FIGURE A2 FIGURE A3 PMID:8770194

  13. Optimization of an Elastic Network Augmented Coarse Grained Model to Study CCMV Capsid Deformation

    PubMed Central

    Globisch, Christoph; Krishnamani, Venkatramanan; Deserno, Markus; Peter, Christine

    2013-01-01

    The major protective coat of most viruses is a highly symmetric protein capsid that forms spontaneously from many copies of identical proteins. Structural and mechanical properties of such capsids, as well as their self-assembly process, have been studied experimentally and theoretically, including modeling efforts by computer simulations on various scales. Atomistic models include specific details of local protein binding but are limited in system size and accessible time, while coarse grained (CG) models do get access to longer time and length scales but often lack the specific local interactions. Multi-scale models aim at bridging this gap by systematically connecting different levels of resolution. Here, a CG model for CCMV (Cowpea Chlorotic Mottle Virus), a virus with an icosahedral shell of 180 identical protein monomers, is developed, where parameters are derived from atomistic simulations of capsid protein dimers in aqueous solution. In particular, a new method is introduced to combine the MARTINI CG model with a supportive elastic network based on structural fluctuations of individual monomers. In the parametrization process, both network connectivity and strength are optimized. This elastic-network optimized CG model, which solely relies on atomistic data of small units (dimers), is able to correctly predict inter-protein conformational flexibility and properties of larger capsid fragments of 20 and more subunits. Furthermore, it is shown that this CG model reproduces experimental (Atomic Force Microscopy) indentation measurements of the entire viral capsid. Thus it is shown that one obvious goal for hierarchical modeling, namely predicting mechanical properties of larger protein complexes from models that are carefully parametrized on elastic properties of smaller units, is achievable. PMID:23613730

  14. Identifying essential pairwise interactions in elastic network model using the alpha shape theory.

    PubMed

    Xia, Fei; Tong, Dudu; Yang, Lifeng; Wang, Dayong; Hoi, Steven C H; Koehl, Patrice; Lu, Lanyuan

    2014-06-01

    Elastic network models (ENM) are based on the idea that the geometry of a protein structure provides enough information for computing its fluctuations around its equilibrium conformation. This geometry is represented as an elastic network (EN) that is, a network of links between residues. A spring is associated with each of these links. The normal modes of the protein are then identified with the normal modes of the corresponding network of springs. Standard approaches for generating ENs rely on a cutoff distance. There is no consensus on how to choose this cutoff. In this work, we propose instead to filter the set of all residue pairs in a protein using the concept of alpha shapes. The main alpha shape we considered is based on the Delaunay triangulation of the Cα positions; we referred to the corresponding EN as EN(∞). We have shown that heterogeneous anisotropic network models, called αHANMs, that are based on EN(∞) reproduce experimental B-factors very well, with correlation coefficients above 0.99 and root-mean-square deviations below 0.1 Å(2) for a large set of high resolution protein structures. The construction of EN(∞) is simple to implement and may be used automatically for generating ENs for all types of ENMs. PMID:24648309

  15. Experimental Study of Athermal Elastic Network Mechanics

    NASA Astrophysics Data System (ADS)

    Michel, Jonathan; Yunker, Peter

    Recently, significant theoretical effort has been directed towards understanding the mechanics of networks. Elastic networks are of inherent fundamental interest and serve as useful analogs for describing other physical systems. Recent applications include modeling of collagen and descriptions of jamming in granular media and glass formation. I propose to discuss ongoing experimental efforts to study mechanical properties of elastic networks, such as Young's modulus and ultimate strength, in the athermal limit. I will begin with the simple case of regular, isostatic crystalline lattices and proceed to studies of random, connected elastic networks of varying bond number for a given number of lattice sites, including both isostatic and sub-isostatic networks.

  16. Coarse-Grained Models Reveal Functional Dynamics - I. Elastic Network Models – Theories, Comparisons and Perspectives

    PubMed Central

    Yang, Lee-Wei; Chng, Choon-Peng

    2008-01-01

    In this review, we summarize the progress on coarse-grained elastic network models (CG-ENMs) in the past decade. Theories were formulated to allow study of conformational dynamics in time/space frames of biological interest. Several highlighted models and their underlined hypotheses are introduced in physical depth. Important ENM offshoots, motivated to reproduce experimental data as well as to address the slow-mode-encoded configurational transitions, are also introduced. With the theoretical developments, computational cost is significantly reduced due to simplified potentials and coarse-grained schemes. Accumulating wealth of data suggest that ENMs agree equally well with experiment in describing equilibrium dynamics despite their distinct potentials and levels of coarse-graining. They however do differ in the slowest motional components that are essential to address large conformational changes of functional significance. The difference stems from the dissimilar curvatures of the harmonic energy wells described for each model. We also provide our views on the predictability of ‘open to close’ (open→close) transitions of biomolecules on the basis of conformational selection theory. Lastly, we address the limitations of the ENM formalism which are partially alleviated by the complementary CG-MD approach, to be introduced in the second paper of this two-part series. PMID:19812764

  17. A mass weighted chemical elastic network model elucidates closed form domain motions in proteins

    PubMed Central

    Kim, Min Hyeok; Seo, Sangjae; Jeong, Jay Il; Kim, Bum Joon; Liu, Wing Kam; Lim, Byeong Soo; Choi, Jae Boong; Kim, Moon Ki

    2013-01-01

    An elastic network model (ENM), usually Cα coarse-grained one, has been widely used to study protein dynamics as an alternative to classical molecular dynamics simulation. This simple approach dramatically saves the computational cost, but sometimes fails to describe a feasible conformational change due to unrealistically excessive spring connections. To overcome this limitation, we propose a mass-weighted chemical elastic network model (MWCENM) in which the total mass of each residue is assumed to be concentrated on the representative alpha carbon atom and various stiffness values are precisely assigned according to the types of chemical interactions. We test MWCENM on several well-known proteins of which both closed and open conformations are available as well as three α-helix rich proteins. Their normal mode analysis reveals that MWCENM not only generates more plausible conformational changes, especially for closed forms of proteins, but also preserves protein secondary structures thus distinguishing MWCENM from traditional ENMs. In addition, MWCENM also reduces computational burden by using a more sparse stiffness matrix. PMID:23456820

  18. Elastic network models capture the motions apparent within ensembles of RNA structures

    PubMed Central

    Zimmermann, Michael T.; Jernigan, Robert L.

    2014-01-01

    The role of structure and dynamics in mechanisms for RNA becomes increasingly important. Computational approaches using simple dynamics models have been successful at predicting the motions of proteins and are often applied to ribonucleo-protein complexes but have not been thoroughly tested for well-packed nucleic acid structures. In order to characterize a true set of motions, we investigate the apparent motions from 16 ensembles of experimentally determined RNA structures. These indicate a relatively limited set of motions that are captured by a small set of principal components (PCs). These limited motions closely resemble the motions computed from low frequency normal modes from elastic network models (ENMs), either at atomic or coarse-grained resolution. Various ENM model types, parameters, and structure representations are tested here against the experimental RNA structural ensembles, exposing differences between models for proteins and for folded RNAs. Differences in performance are seen, depending on the structure alignment algorithm used to generate PCs, modulating the apparent utility of ENMs but not significantly impacting their ability to generate functional motions. The loss of dynamical information upon coarse-graining is somewhat larger for RNAs than for globular proteins, indicating, perhaps, the lower cooperativity of the less densely packed RNA. However, the RNA structures show less sensitivity to the elastic network model parameters than do proteins. These findings further demonstrate the utility of ENMs and the appropriateness of their application to well-packed RNA-only structures, justifying their use for studying the dynamics of ribonucleo-proteins, such as the ribosome and regulatory RNAs. PMID:24759093

  19. Identification of tail binding effect of kinesin-1 using an elastic network model.

    PubMed

    Kim, Jae In; Chang, Hyun Joon; Na, Sungsoo

    2015-10-01

    Kinesin is a motor protein that delivers cargo inside a cell. Kinesin has many different families, but they perform basically same function and have same motions. The walking motion of kinesin enables the cargo delivery inside the cell. Autoinhibition of kinesin is important because it explains how function of kinesin inside a cell is stopped. Former researches showed that tail binding is related to autoinhibition of kinesin. In this work, we performed normal mode analysis with elastic network model using different conformation of kinesin to determine the effect of tail binding by considering four models such as functional form, autoinhibited form, autoinhibited form without tail, and autoinhibited form with carbon structure. Our calculation of the thermal fluctuation and cross-correlation shows the change of tail-binding region in structural motion. Also strain energy of kinesin showed that elimination of tail binding effect leads the structure to have energetically similar behavior with the functional form. PMID:25676575

  20. Artificial neural network for modeling the elastic modulus of electrospun polycaprolactone/gelatin scaffolds.

    PubMed

    Vatankhah, Elham; Semnani, Dariush; Prabhakaran, Molamma P; Tadayon, Mahdi; Razavi, Shahnaz; Ramakrishna, Seeram

    2014-02-01

    Scaffolds for tissue engineering (TE) require the consideration of multiple aspects, including polymeric composition and the structure and mechanical properties of the scaffolds, in order to mimic the native extracellular matrix of the tissue. Electrospun fibers are frequently utilized in TE due to their tunable physical, chemical, and mechanical properties and porosity. The mechanical properties of electrospun scaffolds made from specific polymers are highly dependent on the processing parameters, which can therefore be tuned for particular applications. Fiber diameter and orientation along with polymeric composition are the major factors that determine the elastic modulus of electrospun nano- and microfibers. Here we have developed a neural network model to investigate the simultaneous effects of composition, fiber diameter and fiber orientation of electrospun polycaprolactone/gelatin mats on the elastic modulus of the scaffolds under ambient and simulated physiological conditions. The model generated might assist bioengineers to fabricate electrospun scaffolds with defined fiber diameters, orientations and constituents, thereby replicating the mechanical properties of the native target tissue. PMID:24075888

  1. Elastic regimes of subisostatic athermal fiber networks

    NASA Astrophysics Data System (ADS)

    Licup, A. J.; Sharma, A.; MacKintosh, F. C.

    2016-01-01

    Athermal models of disordered fibrous networks are highly useful for studying the mechanics of elastic networks composed of stiff biopolymers. The underlying network architecture is a key aspect that can affect the elastic properties of these systems, which include rich linear and nonlinear elasticity. Existing computational approaches have focused on both lattice-based and off-lattice networks obtained from the random placement of rods. It is not obvious, a priori, whether the two architectures have fundamentally similar or different mechanics. If they are different, it is not clear which of these represents a better model for biological networks. Here, we show that both approaches are essentially equivalent for the same network connectivity, provided the networks are subisostatic with respect to central force interactions. Moreover, for a given subisostatic connectivity, we even find that lattice-based networks in both two and three dimensions exhibit nearly identical nonlinear elastic response. We provide a description of the linear mechanics for both architectures in terms of a scaling function. We also show that the nonlinear regime is dominated by fiber bending and that stiffening originates from the stabilization of subisostatic networks by stress. We propose a generalized relation for this regime in terms of the self-generated normal stresses that develop under deformation. Different network architectures have different susceptibilities to the normal stress but essentially exhibit the same nonlinear mechanics. Such a stiffening mechanism has been shown to successfully capture the nonlinear mechanics of collagen networks.

  2. Elastic regimes of subisostatic athermal fiber networks.

    PubMed

    Licup, A J; Sharma, A; MacKintosh, F C

    2016-01-01

    Athermal models of disordered fibrous networks are highly useful for studying the mechanics of elastic networks composed of stiff biopolymers. The underlying network architecture is a key aspect that can affect the elastic properties of these systems, which include rich linear and nonlinear elasticity. Existing computational approaches have focused on both lattice-based and off-lattice networks obtained from the random placement of rods. It is not obvious, a priori, whether the two architectures have fundamentally similar or different mechanics. If they are different, it is not clear which of these represents a better model for biological networks. Here, we show that both approaches are essentially equivalent for the same network connectivity, provided the networks are subisostatic with respect to central force interactions. Moreover, for a given subisostatic connectivity, we even find that lattice-based networks in both two and three dimensions exhibit nearly identical nonlinear elastic response. We provide a description of the linear mechanics for both architectures in terms of a scaling function. We also show that the nonlinear regime is dominated by fiber bending and that stiffening originates from the stabilization of subisostatic networks by stress. We propose a generalized relation for this regime in terms of the self-generated normal stresses that develop under deformation. Different network architectures have different susceptibilities to the normal stress but essentially exhibit the same nonlinear mechanics. Such a stiffening mechanism has been shown to successfully capture the nonlinear mechanics of collagen networks. PMID:26871101

  3. Mechanics of elastic networks

    PubMed Central

    Norris, Andrew N.

    2014-01-01

    We consider a periodic lattice structure in d=2 or 3 dimensions with unit cell comprising Z thin elastic members emanating from a similarly situated central node. A general theoretical approach provides an algebraic formula for the effective elasticity of such frameworks. The method yields the effective cubic elastic constants for three-dimensional space-filling lattices with Z=4, 6, 8, 12 and 14, the last being the ‘stiffest’ lattice proposed by Gurtner & Durand (Gurtner & Durand 2014 Proc. R. Soc. A 470, 20130611. (doi:10.1098/rspa.2013.0611)). The analytical expressions provide explicit formulae for the effective properties of pentamode materials, both isotropic and anisotropic, obtained from the general formulation in the stretch-dominated limit for Z=d+1. PMID:25484608

  4. Robustness Elasticity in Complex Networks

    PubMed Central

    Matisziw, Timothy C.; Grubesic, Tony H.; Guo, Junyu

    2012-01-01

    Network robustness refers to a network’s resilience to stress or damage. Given that most networks are inherently dynamic, with changing topology, loads, and operational states, their robustness is also likely subject to change. However, in most analyses of network structure, it is assumed that interaction among nodes has no effect on robustness. To investigate the hypothesis that network robustness is not sensitive or elastic to the level of interaction (or flow) among network nodes, this paper explores the impacts of network disruption, namely arc deletion, over a temporal sequence of observed nodal interactions for a large Internet backbone system. In particular, a mathematical programming approach is used to identify exact bounds on robustness to arc deletion for each epoch of nodal interaction. Elasticity of the identified bounds relative to the magnitude of arc deletion is assessed. Results indicate that system robustness can be highly elastic to spatial and temporal variations in nodal interactions within complex systems. Further, the presence of this elasticity provides evidence that a failure to account for nodal interaction can confound characterizations of complex networked systems. PMID:22808060

  5. Global motions of the nuclear pore complex: insights from elastic network models.

    PubMed

    Lezon, Timothy R; Sali, Andrej; Bahar, Ivet

    2009-09-01

    The nuclear pore complex (NPC) is the gate to the nucleus. Recent determination of the configuration of proteins in the yeast NPC at approximately 5 nm resolution permits us to study the NPC global dynamics using coarse-grained structural models. We investigate these large-scale motions by using an extended elastic network model (ENM) formalism applied to several coarse-grained representations of the NPC. Two types of collective motions (global modes) are predicted by the ENMs to be intrinsically favored by the NPC architecture: global bending and extension/contraction from circular to elliptical shapes. These motions are shown to be robust against tested variations in the representation of the NPC, and are largely captured by a simple model of a toroid with axially varying mass density. We demonstrate that spoke multiplicity significantly affects the accessible number of symmetric low-energy modes of motion; the NPC-like toroidal structures composed of 8 spokes have access to highly cooperative symmetric motions that are inaccessible to toroids composed of 7 or 9 spokes. The analysis reveals modes of motion that may facilitate macromolecular transport through the NPC, consistent with previous experimental observations. PMID:19730674

  6. Modeling the bacterial flagellum by an elastic network of rigid bodies

    NASA Astrophysics Data System (ADS)

    Speier, C.; Vogel, R.; Stark, H.

    2011-08-01

    Bacteria such as Escherichia coli propel themselves by rotating a bundle of helical filaments, each driven by a rotary motor embedded in the cell membrane. Each filament is an assembly of thousands of copies of the protein flagellin which assumes two different states. We model the filament by an elastic network of rigid bodies that form bonds with one another according to a scheme suggested by Namba and Vondervistz (1997 Q. Rev. Biophys. 30 1-65) and add additional binding sites at the inner part of the rigid body. Our model reproduces the helical parameters of the 12 possible polymorphic configurations very well. We demonstrate that its energetical ground state corresponds to the normal helical form, usually observed in nature, only when inner and outer binding sites of the rigid body have a large axial displacement. This finding correlates directly to the elongated shape of the flagellin molecule. An Ising Hamiltonian in our model directly addresses the two states of the flagellin protein. It contains an external field that represents external parameters which allow us to alter the ground state of the filament.

  7. Strategy for designing broadband vibration isolation systems through exactly solvable models of graded elastic networks

    NASA Astrophysics Data System (ADS)

    Ng, Ka Ki; Chan, Wai Soen; Yu, Kin Wah

    2015-03-01

    Motivated by the need of seismic base isolation, we have proposed a strategy to design vibration isolation systems to achieve near-zero amplitude vibration under external excitations over a broad frequency band. The strategy combines two ideas from previous works: (i) zeros assignment for broadband epsilon-near-zero metamaterials [Sun, and Yu (2012)]; and (ii) the localization of vibrational modes in graded elastic networks [Xiao, Yakubo, and Yu (2006)]. Firstly, we aim to assign zeros (anti-resonance frequencies) over an operating frequency band. Starting from an exactly solvable model of zigzag diatomic chains, we demonstrate a one-to-one correspondence between the zeros and one type of the masses after solving the models. Hence, the zeros can be assigned at will by tuning the masses. Secondly, in order to achieve further vibrational suppression by gradon localization, a band overlapping picture is applied to tune the rest of the masses to an optimal value. The results can be generalized to 2D and 3D structures for more realistic applications.

  8. Prediction of allosteric sites on protein surfaces with an elastic-network-model-based thermodynamic method

    NASA Astrophysics Data System (ADS)

    Su, Ji Guo; Qi, Li Sheng; Li, Chun Hua; Zhu, Yan Ying; Du, Hui Jing; Hou, Yan Xue; Hao, Rui; Wang, Ji Hua

    2014-08-01

    Allostery is a rapid and efficient way in many biological processes to regulate protein functions, where binding of an effector at the allosteric site alters the activity and function at a distant active site. Allosteric regulation of protein biological functions provides a promising strategy for novel drug design. However, how to effectively identify the allosteric sites remains one of the major challenges for allosteric drug design. In the present work, a thermodynamic method based on the elastic network model was proposed to predict the allosteric sites on the protein surface. In our method, the thermodynamic coupling between the allosteric and active sites was considered, and then the allosteric sites were identified as those where the binding of an effector molecule induces a large change in the binding free energy of the protein with its ligand. Using the proposed method, two proteins, i.e., the 70 kD heat shock protein (Hsp70) and GluA2 alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA) receptor, were studied and the allosteric sites on the protein surface were successfully identified. The predicted results are consistent with the available experimental data, which indicates that our method is a simple yet effective approach for the identification of allosteric sites on proteins.

  9. Prediction of allosteric sites on protein surfaces with an elastic-network-model-based thermodynamic method.

    PubMed

    Su, Ji Guo; Qi, Li Sheng; Li, Chun Hua; Zhu, Yan Ying; Du, Hui Jing; Hou, Yan Xue; Hao, Rui; Wang, Ji Hua

    2014-08-01

    Allostery is a rapid and efficient way in many biological processes to regulate protein functions, where binding of an effector at the allosteric site alters the activity and function at a distant active site. Allosteric regulation of protein biological functions provides a promising strategy for novel drug design. However, how to effectively identify the allosteric sites remains one of the major challenges for allosteric drug design. In the present work, a thermodynamic method based on the elastic network model was proposed to predict the allosteric sites on the protein surface. In our method, the thermodynamic coupling between the allosteric and active sites was considered, and then the allosteric sites were identified as those where the binding of an effector molecule induces a large change in the binding free energy of the protein with its ligand. Using the proposed method, two proteins, i.e., the 70 kD heat shock protein (Hsp70) and GluA2 alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA) receptor, were studied and the allosteric sites on the protein surface were successfully identified. The predicted results are consistent with the available experimental data, which indicates that our method is a simple yet effective approach for the identification of allosteric sites on proteins. PMID:25215770

  10. Identification of key residues for protein conformational transition using elastic network model

    NASA Astrophysics Data System (ADS)

    Su, Ji Guo; Jin Xu, Xian; Hua Li, Chun; Chen, Wei Zu; Wang, Cun Xin

    2011-11-01

    Proteins usually undergo conformational transitions between structurally disparate states to fulfill their functions. The large-scale allosteric conformational transitions are believed to involve some key residues that mediate the conformational movements between different regions of the protein. In the present work, a thermodynamic method based on the elastic network model is proposed to predict the key residues involved in protein conformational transitions. In our method, the key functional sites are identified as the residues whose perturbations largely influence the free energy difference between the protein states before and after transition. Two proteins, nucleotide binding domain of the heat shock protein 70 and human/rat DNA polymerase β, are used as case studies to identify the critical residues responsible for their open-closed conformational transitions. The results show that the functionally important residues mainly locate at the following regions for these two proteins: (1) the bridging point at the interface between the subdomains that control the opening and closure of the binding cleft; (2) the hinge region between different subdomains, which mediates the cooperative motions between the corresponding subdomains; and (3) the substrate binding sites. The similarity in the positions of the key residues for these two proteins may indicate a common mechanism in their conformational transitions.

  11. On the Applicability of Elastic Network Models for the Study of RNA CUG Trinucleotide Repeat Overexpansion

    PubMed Central

    González, Àlex L.; Teixidó, Jordi; Borrell, José I.; Estrada-Tejedor, Roger

    2016-01-01

    Non-coding RNAs play a pivotal role in a number of diseases promoting an aberrant sequestration of nuclear RNA-binding proteins. In the particular case of myotonic dystrophy type 1 (DM1), a multisystemic autosomal dominant disease, the formation of large non-coding CUG repeats set up long-tract hairpins able to bind muscleblind-like proteins (MBNL), which trigger the deregulation of several splicing events such as cardiac troponin T (cTNT) and insulin receptor’s, among others. Evidence suggests that conformational changes in RNA are determinant for the recognition and binding of splicing proteins, molecular modeling simulations can attempt to shed light on the structural diversity of CUG repeats and to understand their pathogenic mechanisms. Molecular dynamics (MD) are widely used to obtain accurate results at atomistic level, despite being very time consuming, and they contrast with fast but simplified coarse-grained methods such as Elastic Network Model (ENM). In this paper, we assess the application of ENM (traditionally applied on proteins) for studying the conformational space of CUG repeats and compare it to conventional and accelerated MD conformational sampling. Overall, the results provided here reveal that ANM can provide useful insights into dynamic rCUG structures at a global level, and that their dynamics depend on both backbone and nucleobase fluctuations. On the other hand, ANM fail to describe local U-U dynamics of the rCUG system, which require more computationally expensive methods such as MD. Given that several limitations are inherent to both methods, we discuss here the usefulness of the current theoretical approaches for studying highly dynamic RNA systems such as CUG trinucleotide repeat overexpansions. PMID:27010216

  12. Postinstability models in elasticity

    NASA Technical Reports Server (NTRS)

    Zak, M.

    1984-01-01

    It is demonstrated that the instability caused by the failure of hyperbolicity in elasticity and associated with the problem of unpredictability in classical mechanics expresses the incompleteness of the original model of an elastic medium. The instability as well as the ill-posedness of the Cauchy problem are eliminated by reformulating the original model.

  13. Nonlinear elasticity of semiflexible filament networks.

    PubMed

    Meng, Fanlong; Terentjev, Eugene M

    2016-08-10

    We develop a continuum theory for equilibrium elasticity of a network of crosslinked semiflexible filaments, spanning the full range between flexible entropy-driven chains to stiff athermal rods. We choose the 3-chain constitutive model of network elasticity over several plausible candidates, and derive analytical expressions for the elastic energy at arbitrary strain, with the corresponding stress-strain relationship. The theory fits well to a wide range of experimental data on simple shear in different filament networks, quantitatively matching the differential shear modulus variation with stress, with only two adjustable parameters (which represent the filament stiffness and the pre-tension in the network, respectively). The general theory accurately describes the crossover between the positive and negative Poynting effect (normal stress on imposed shear) on increasing the stiffness of filaments forming the network. We discuss the network stability (the point of marginal rigidity) and the phenomenon of tensegrity, showing that filament pre-tension on crosslinking into the network determines the magnitude of linear modulus G0. PMID:27444846

  14. Modeling the collagen fibril network of biological tissues as a nonlinearly elastic material using a continuous volume fraction distribution function

    PubMed Central

    Shirazi, Reza; Vena, Pasquale; Sah, Robert L.; Klisch, Stephen M.

    2012-01-01

    Despite distinct mechanical functions, biological soft tissues have a common microstructure in which a ground matrix is reinforced by a collagen fibril network. The microstructural properties of the collagen network contribute to continuum mechanical tissue properties that are strongly anisotropic with tensile-compressive asymmetry. In this study, a novel approach based on a continuous distribution of collagen fibril volume fractions is developed to model fibril reinforced soft tissues as a nonlinearly elastic and anisotropic material. Compared with other approaches that use a normalized number of fibrils for the definition of the distribution function, this representation is based on a distribution parameter (i.e. volume fraction) that is commonly measured experimentally while also incorporating pre-stress of the collagen fibril network in a tissue natural configuration. After motivating the form of the collagen strain energy function, examples are provided for two volume fraction distribution functions. Consequently, collagen second-Piola Kirchhoff stress and elasticity tensors are derived, first in general form and then specifically for a model that may be used for immature bovine articular cartilage. It is shown that the proposed strain energy is a convex function of the deformation gradient tensor and, thus, is suitable for the formation of a polyconvex tissue strain energy function. PMID:23390357

  15. Coarse-grained models reveal functional dynamics--I. Elastic network models--theories, comparisons and perspectives.

    PubMed

    Yang, Lee-Wei; Chng, Choon-Peng

    2008-01-01

    In this review, we summarize the progress on coarse-grained elastic network models (CG-ENMs) in the past decade. Theories were formulated to allow study of conformational dynamics in time/space frames of biological interest. Several highlighted models and their underlined hypotheses are introduced in physical depth. Important ENM offshoots, motivated to reproduce experimental data as well as to address the slow-mode-encoded configurational transitions, are also introduced. With the theoretical developments, computational cost is significantly reduced due to simplified potentials and coarse-grained schemes. Accumulating wealth of data suggest that ENMs agree equally well with experiment in describing equilibrium dynamics despite their distinct potentials and levels of coarse-graining. They however do differ in the slowest motional components that are essential to address large conformational changes of functional significance. The difference stems from the dissimilar curvatures of the harmonic energy wells described for each model. We also provide our views on the predictability of 'open to close' (open-->close) transitions of biomolecules on the basis of conformational selection theory. Lastly, we address the limitations of the ENM formalism which are partially alleviated by the complementary CG-MD approach, to be introduced in the second paper of this two-part series. PMID:19812764

  16. Elasticity of fibrous networks under uniaxial prestress.

    PubMed

    Vahabi, Mahsa; Sharma, Abhinav; Licup, Albert James; van Oosten, Anne S G; Galie, Peter A; Janmey, Paul A; MacKintosh, Fred C

    2016-06-14

    We present theoretical and experimental studies of the elastic response of fibrous networks subjected to uniaxial strain. Uniaxial compression or extension is applied to extracellular networks of fibrin and collagen using a shear rheometer with free water in/outflow. Both uniaxial stress and the network shear modulus are measured. Prior work [van Oosten, et al., Sci. Rep., 2015, 6, 19270] has shown softening/stiffening of these networks under compression/extension, together with a nonlinear response to shear, but the origin of such behaviour remains poorly understood. Here, we study how uniaxial strain influences the nonlinear mechanics of fibrous networks. Using a computational network model with bendable and stretchable fibres, we show that the softening/stiffening behaviour can be understood for fixed lateral boundaries in 2D and 3D networks with comparable average connectivities to the experimental extracellular networks. Moreover, we show that the onset of stiffening depends strongly on the imposed uniaxial strain. Our study highlights the importance of both uniaxial strain and boundary conditions in determining the mechanical response of hydrogels. PMID:27174568

  17. Robust Heterogeneous Anisotropic Elastic Network Model Precisely Reproduces the Experimental B-factors of Biomolecules.

    PubMed

    Xia, Fei; Tong, Dudu; Lu, Lanyuan

    2013-08-13

    A computational method called the progressive fluctuation matching (PFM) is developed for constructing robust heterogeneous anisotropic network models (HANMs) for biomolecular systems. An HANM derived through the PFM approach consists of harmonic springs with realistic positive force constants, and yields the calculated B-factors that are basically identical to the experimental ones. For the four tested protein systems including crambin, trypsin inhibitor, HIV-1 protease, and lysozyme, the root-mean-square deviations between the experimental and the computed B-factors are only 0.060, 0.095, 0.247, and 0.049 Å(2), respectively, and the correlation coefficients are 0.99 for all. By comparing the HANM/ANM normal modes to their counterparts derived from both an atomistic force field and an NMR structure ensemble, it is found that HANM may provide more accurate results on protein dynamics. PMID:26584122

  18. Nonlinear Elasticity of Bottlebrush Networks and Gels

    NASA Astrophysics Data System (ADS)

    Dobrynin, Andrey; Cao, Zhen; Carrillo, Jan-Michael; Sheiko, Sergei

    2015-03-01

    Bottlebrush networks are examples of supersoft elastic materials that demonstrate highly nonlinear stress-strain behavior leading to material hardening with increasing deformation. Using molecular dynamics simulations and theoretical analysis we studied correlations between mechanical properties of bottlebrush networks and molecular parameters. Our simulations showed that both the network shear modulus G and the elongation at break decrease (onset of finite extensibility) with increasing the degree of polymerization (DP) of the side chains. The finite extensibility behavior is ascribed to the increase of the backbone elongation ratio β with DP of the side chains. Simulation results are in a good agreement with experimental observation of progressive softening of bottlebrush elastomers with increasing length of side chains and predictions of the nonlinear network deformation model which provides universal relationship between nonlinear network deformation modulus as a function of the first deformation invariant I1, bottlebrush backbone elongation ratio β, bottlebrush effective bending constant K and concentration of crosslinks. NSF DMR-1409710, DMR-1407645, DMR-1122483.

  19. Cross-Linked Fiber Network Embedded in Elastic Matrix

    PubMed Central

    Zhang, L.; Lake, S.P.; Barocas, V.H.; Shephard, M.S.; Picu, R.C.

    2013-01-01

    The mechanical behavior of a three-dimensional cross-linked fiber network embedded in matrix is studied in this work. The network is composed from linear elastic fibers which store energy only in the axial deformation mode, while the matrix is also isotropic and linear elastic. Such systems are encountered in a broad range of applications, from tissue to consumer products. As the matrix modulus increases, the network is constrained to deform more affinely. This leads to internal forces acting between the network and the matrix, which produce strong stress concentration at the network cross-links. This interaction increases the apparent modulus of the network and decreases the apparent modulus of the matrix. A model is developed to predict the effective modulus of the composite and its predictions are compared with numerical data for a variety of networks. PMID:24089623

  20. Computational Simulation of the Activation Cycle of Gα Subunit in the G Protein Cycle Using an Elastic Network Model

    PubMed Central

    Kim, Min Hyeok; Kim, Young Jin; Kim, Hee Ryung; Jeon, Tae-Joon; Choi, Jae Boong; Chung, Ka Young; Kim, Moon Ki

    2016-01-01

    Agonist-activated G protein-coupled receptors (GPCRs) interact with GDP-bound G protein heterotrimers (Gαβγ) promoting GDP/GTP exchange, which results in dissociation of Gα from the receptor and Gβγ. The GTPase activity of Gα hydrolyzes GTP to GDP, and the GDP-bound Gα interacts with Gβγ, forming a GDP-bound G protein heterotrimer. The G protein cycle is allosterically modulated by conformational changes of the Gα subunit. Although biochemical and biophysical methods have elucidated the structure and dynamics of Gα, the precise conformational mechanisms underlying the G protein cycle are not fully understood yet. Simulation methods could help to provide additional details to gain further insight into G protein signal transduction mechanisms. In this study, using the available X-ray crystal structures of Gα, we simulated the entire G protein cycle and described not only the steric features of the Gα structure, but also conformational changes at each step. Each reference structure in the G protein cycle was modeled as an elastic network model and subjected to normal mode analysis. Our simulation data suggests that activated receptors trigger conformational changes of the Gα subunit that are thermodynamically favorable for opening of the nucleotide-binding pocket and GDP release. Furthermore, the effects of GTP binding and hydrolysis on mobility changes of the C and N termini and switch regions are elucidated. In summary, our simulation results enabled us to provide detailed descriptions of the structural and dynamic features of the G protein cycle. PMID:27483005

  1. Nonlinear and heterogeneous elasticity of multiply-crosslinked biopolymer networks

    NASA Astrophysics Data System (ADS)

    Amuasi, H. E.; Heussinger, C.; Vink, R. L. C.; Zippelius, A.

    2015-08-01

    We simulate randomly crosslinked networks of biopolymers, characterizing linear and nonlinear elasticity under different loading conditions (uniaxial extension, simple shear, and pure shear). Under uniaxial extension, and upon entering the nonlinear regime, the network switches from a dilatant to contractile response. Analogously, under isochoric conditions (pure shear), the normal stresses change their sign. Both effects are readily explained with a generic weakly nonlinear elasticity theory. The elastic moduli display an intermediate super-stiffening regime, where moduli increase much stronger with applied stress σ than predicted by the force-extension relation of a single wormlike-chain ({G}{wlc}∼ {σ }3/2). We interpret this super-stiffening regime in terms of the reorientation of filaments with the maximum tensile direction of the deformation field. A simple model for the reorientation response gives an exponential stiffening, G∼ {{{e}}}σ , in qualitative agreement with our data. The heterogeneous, anisotropic structure of the network is reflected in correspondingly heterogeneous and anisotropic elastic properties. We provide a coarse-graining scheme to quantify the local anisotropy, the fluctuations of the elastic moduli, and the local stresses as a function of coarse-graining length. Heterogeneities of the elastic moduli are strongly correlated with the local density and increase with applied strain.

  2. Pulse wave propagation in a model human arterial network: Assessment of 1-D visco-elastic simulations against in vitro measurements

    PubMed Central

    Alastruey, Jordi; Khir, Ashraf W.; Matthys, Koen S.; Segers, Patrick; Sherwin, Spencer J.; Verdonck, Pascal R.; Parker, Kim H.; Peiró, Joaquim

    2011-01-01

    The accuracy of the nonlinear one-dimensional (1-D) equations of pressure and flow wave propagation in Voigt-type visco-elastic arteries was tested against measurements in a well-defined experimental 1:1 replica of the 37 largest conduit arteries in the human systemic circulation. The parameters required by the numerical algorithm were directly measured in the in vitro setup and no data fitting was involved. The inclusion of wall visco-elasticity in the numerical model reduced the underdamped high-frequency oscillations obtained using a purely elastic tube law, especially in peripheral vessels, which was previously reported in this paper [Matthys et al., 2007. Pulse wave propagation in a model human arterial network: Assessment of 1-D numerical simulations against in vitro measurements. J. Biomech. 40, 3476–3486]. In comparison to the purely elastic model, visco-elasticity significantly reduced the average relative root-mean-square errors between numerical and experimental waveforms over the 70 locations measured in the in vitro model: from 3.0% to 2.5% (p<0.012) for pressure and from 15.7% to 10.8% (p<0.002) for the flow rate. In the frequency domain, average relative errors between numerical and experimental amplitudes from the 5th to the 20th harmonic decreased from 0.7% to 0.5% (p<0.107) for pressure and from 7.0% to 3.3% (p<10−6) for the flow rate. These results provide additional support for the use of 1-D reduced modelling to accurately simulate clinically relevant problems at a reasonable computational cost. PMID:21724188

  3. Efficiency gain from elastic optical networks

    NASA Astrophysics Data System (ADS)

    Morea, Annalisa; Rival, Olivier

    2011-12-01

    We compare the cost-efficiency of optical networks based on mixed datarates (10, 40, 100Gb/s) and datarateelastic technologies. A European backbone network is examined under various traffic assumptions (volume of transported data per demand and total number of demands) to better understand the impact of traffic characteristics on cost-efficiency. Network dimensioning is performed for static and restorable networks (resilient to one-link failure). In this paper we will investigate the trade-offs between price of interfaces, reach and reconfigurability, showing that elastic solutions can be more cost-efficient than mixed-rate solutions because of the better compatibility between different datarates, increased reach of channels and simplified wavelength allocation.

  4. Variability of Fiber Elastic Moduli in Composite Random Fiber Networks Makes the Network Softer

    NASA Astrophysics Data System (ADS)

    Ban, Ehsan; Picu, Catalin

    2015-03-01

    Athermal fiber networks are assemblies of beams or trusses. They have been used to model mechanics of fibrous materials such as biopolymer gels and synthetic nonwovens. Elasticity of these networks has been studied in terms of various microstructural parameters such as the stiffness of their constituent fibers. In this work we investigate the elasticity of composite fiber networks made from fibers with moduli sampled from a distribution function. We use finite elements simulations to study networks made by 3D Voronoi and Delaunay tessellations. The resulting data collapse to power laws showing that variability in fiber stiffness makes fiber networks softer. We also support the findings by analytical arguments. Finally, we apply these results to a network with curved fibers to explain the dependence of the network's modulus on the variation of its structural parameters.

  5. Advantages of IP over elastic optical networks using multi-flow transponders from cost and equipment count aspects.

    PubMed

    Tanaka, Takafumi; Hirano, Akira; Jinno, Masahiko

    2014-01-13

    To evaluate the cost efficiency of IP over elastic optical network architectures, we use a multi-layer network design scheme that covers network to node equipment level. An evaluation in a static traffic environment shows that the multi-flow optical transponder-based elastic optical network reduces total cost as well as equipment counts compared to other elastic network models based on fixed-rate, mixed-line-rate and bandwidth-variable transponders. PMID:24514966

  6. Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained Models

    PubMed Central

    Na, Hyuntae; Jernigan, Robert L.; Song, Guang

    2015-01-01

    Dynamics can provide deep insights into the functional mechanisms of proteins and protein complexes. For large protein complexes such as GroEL/GroES with more than 8,000 residues, obtaining a fine-grained all-atom description of its normal mode motions can be computationally prohibitive and is often unnecessary. For this reason, coarse-grained models have been used successfully. However, most existing coarse-grained models use extremely simple potentials to represent the interactions within the coarse-grained structures and as a result, the dynamics obtained for the coarse-grained structures may not always be fully realistic. There is a gap between the quality of the dynamics of the coarse-grained structures given by all-atom models and that by coarse-grained models. In this work, we resolve an important question in protein dynamics computations—how can we efficiently construct coarse-grained models whose description of the dynamics of the coarse-grained structures remains as accurate as that given by all-atom models? Our method takes advantage of the sparseness of the Hessian matrix and achieves a high efficiency with a novel iterative matrix projection approach. The result is highly significant since it can provide descriptions of normal mode motions at an all-atom level of accuracy even for the largest biomolecular complexes. The application of our method to GroEL/GroES offers new insights into the mechanism of this biologically important chaperonin, such as that the conformational transitions of this protein complex in its functional cycle are even more strongly connected to the first few lowest frequency modes than with other coarse-grained models. PMID:26473491

  7. Drainage fracture networks in elastic solids with internal fluid generation

    NASA Astrophysics Data System (ADS)

    Kobchenko, Maya; Hafver, Andreas; Jettestuen, Espen; Galland, Olivier; Renard, François; Meakin, Paul; Jamtveit, Bjørn; Dysthe, Dag K.

    2013-06-01

    Experiments in which CO2 gas was generated by the yeast fermentation of sugar in an elastic layer of gelatine gel confined between two glass plates are described and analyzed theoretically. The CO2 gas pressure causes the gel layer to fracture. The gas produced is drained on short length scales by diffusion and on long length scales by flow in a fracture network, which has topological properties that are intermediate between river networks and hierarchical-fracture networks. A simple model for the experimental system with two parameters that characterize the disorder and the intermediate (river-fracture) topology of the network was developed and the results of the model were compared with the experimental results.

  8. Nonlinear elasticity of disordered fiber networks

    NASA Astrophysics Data System (ADS)

    Feng, Jingchen; Levine, Herbert; Mao, Xiaoming; Sander, Leonard M.

    One of the most striking mechanical properties in disordered biopolymer gels is strong nonlinearities. In the case of athermal gels (such as collagen- I) the nonlinearity has long been associated with a crossover from a bending dominated to a stretching dominated regime of elasticity. The physics of this crossover is related to the existence of a central-force isostatic point and to the small bending modulus for most gels. This crossover induces scaling behavior for the elastic moduli. In particular, for linear elasticity such a scaling law has been demonstrated by Broedersz et al. We generalize the scaling to the nonlinear regime with a two-parameter scaling law involving three critical exponents. We do numerical testing of the scaling law for two disordered lattice models, and find a good scaling collapse for the shear modulus in both the linear and nonlinear regimes. We compute all the critical exponents for the two lattice models and discuss the applicability of our results to real systems.

  9. Deformable elastic network refinement for low-resolution macromolecular crystallography

    SciTech Connect

    Schröder, Gunnar F.; Levitt, Michael; Brunger, Axel T.

    2014-09-01

    An overview of applications of the deformable elastic network (DEN) refinement method is presented together with recommendations for its optimal usage. Crystals of membrane proteins and protein complexes often diffract to low resolution owing to their intrinsic molecular flexibility, heterogeneity or the mosaic spread of micro-domains. At low resolution, the building and refinement of atomic models is a more challenging task. The deformable elastic network (DEN) refinement method developed previously has been instrumental in the determinion of several structures at low resolution. Here, DEN refinement is reviewed, recommendations for its optimal usage are provided and its limitations are discussed. Representative examples of the application of DEN refinement to challenging cases of refinement at low resolution are presented. These cases include soluble as well as membrane proteins determined at limiting resolutions ranging from 3 to 7 Å. Potential extensions of the DEN refinement technique and future perspectives for the interpretation of low-resolution crystal structures are also discussed.

  10. Scale-Dependent Nonaffine Elasticity of Semiflexible Polymer Networks

    NASA Astrophysics Data System (ADS)

    Atakhorrami, M.; Koenderink, G. H.; Palierne, J. F.; MacKintosh, F. C.; Schmidt, C. F.

    2014-02-01

    The cytoskeleton of eukaryotic cells provides mechanical support and governs intracellular transport. These functions rely on the complex mechanical properties of networks of semiflexible protein filaments. We study the impact of local network deformations on the scale-dependent mobility of probe particles in entangled networks of actin filaments using high-bandwidth microrheology. We find that micron-sized particles in these networks experience two opposing noncontinuum elastic effects: entropic depletion reduces the effective network rigidity, while local nonaffine deformations of the network substantially enhance the rigidity at low frequencies, eventually leading to a size-independent response and strong violation of the generalized Stokes formula. We show that a simple model of lateral bending of filaments embedded in a viscoelastic background leads to an intermediate scaling regime for the apparent elastic modulus G'(ω)˜ω9/16, closely matching the experiments. These results demonstrate that nonaffine bending deformations can be dominant for the mobility of objects of the size of vesicles and organelles in the cell.

  11. Domain Motions and Functionally-Key Residues of L-Alanine Dehydrogenase Revealed by an Elastic Network Model.

    PubMed

    Li, Xing-Yuan; Zhang, Jing-Chao; Zhu, Yan-Ying; Su, Ji-Guo

    2015-01-01

    Mycobacterium tuberculosis L-alanine dehydrogenase (L-MtAlaDH) plays an important role in catalyzing L-alanine to ammonia and pyruvate, which has been considered to be a potential target for tuberculosis treatment. In the present work, the functional domain motions encoded in the structure of L-MtAlaDH were investigated by using the Gaussian network model (GNM) and the anisotropy network model (ANM). The slowest modes for the open-apo and closed-holo structures of the enzyme show that the domain motions have a common hinge axis centered in residues Met133 and Met301. Accompanying the conformational transition, both the 1,4-dihydronicotinamide adenine dinucleotide (NAD)-binding domain (NBD) and the substrate-binding domain (SBD) move in a highly coupled way. The first three slowest modes of ANM exhibit the open-closed, rotation and twist motions of L-MtAlaDH, respectively. The calculation of the fast modes reveals the residues responsible for the stability of the protein, and some of them are involved in the interaction with the ligand. Then, the functionally-important residues relevant to the binding of the ligand were identified by using a thermodynamic method. Our computational results are consistent with the experimental data, which will help us to understand the physical mechanism for the function of L-MtAlaDH. PMID:26690143

  12. Nonlinear elasticity of cross-linked networks

    NASA Astrophysics Data System (ADS)

    John, Karin; Caillerie, Denis; Peyla, Philippe; Raoult, Annie; Misbah, Chaouqi

    2013-04-01

    Cross-linked semiflexible polymer networks are omnipresent in living cells. Typical examples are actin networks in the cytoplasm of eukaryotic cells, which play an essential role in cell motility, and the spectrin network, a key element in maintaining the integrity of erythrocytes in the blood circulatory system. We introduce a simple mechanical network model at the length scale of the typical mesh size and derive a continuous constitutive law relating the stress to deformation. The continuous constitutive law is found to be generically nonlinear even if the microscopic law at the scale of the mesh size is linear. The nonlinear bulk mechanical properties are in good agreement with the experimental data for semiflexible polymer networks, i.e., the network stiffens and exhibits a negative normal stress in response to a volume-conserving shear deformation, whereby the normal stress is of the same order as the shear stress. Furthermore, it shows a strain localization behavior in response to an uniaxial compression. Within the same model we find a hierarchy of constitutive laws depending on the degree of nonlinearities retained in the final equation. The presented theory provides a basis for the continuum description of polymer networks such as actin or spectrin in complex geometries and it can be easily coupled to growth problems, as they occur, for example, in modeling actin-driven motility.

  13. Dynamic Models of Robots with Elastic Hinges

    NASA Astrophysics Data System (ADS)

    Krakhmalev, O. N.

    2016-04-01

    Two dynamic models of robots with elastic hinges are considered. Dynamic models are the implementation of the method based on the Lagrange equation using the transformation matrices of elastic coordinates. Dynamic models make it possible to determine the elastic deviations from programmed motion trajectories caused by elastic deformations in hinges, which are taken into account in directions of change of the corresponding generalized coordinates. One model is the exact implementation of the Lagrange method and makes it possible to determine the total elastic deviation of the robot from the programmed motion trajectory. Another dynamic model is approximated and makes it possible to determine small elastic quasi-static deviations and elastic vibrations. The results of modeling the dynamics by two models are compared to the example of a two-link manipulator system. The considered models can be used when performing investigations of the mathematical accuracy of the robots.

  14. A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations

    PubMed Central

    Frappier, Vincent; Najmanovich, Rafael J.

    2014-01-01

    Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is a trade-off between speed and accuracy in different choices. In one extreme one finds accurate but slow molecular-dynamics based methods with all-atom representations and detailed atom potentials. On the other extreme, fast elastic network model (ENM) methods with Cα−only representations and simplified potentials that based on geometry alone, thus oblivious to protein sequence. Here we present ENCoM, an Elastic Network Contact Model that employs a potential energy function that includes a pairwise atom-type non-bonded interaction term and thus makes it possible to consider the effect of the specific nature of amino-acids on dynamics within the context of NMA. ENCoM is as fast as existing ENM methods and outperforms such methods in the generation of conformational ensembles. Here we introduce a new application for NMA methods with the use of ENCoM in the prediction of the effect of mutations on protein stability. While existing methods are based on machine learning or enthalpic considerations, the use of ENCoM, based on vibrational normal modes, is based on entropic considerations. This represents a novel area of application for NMA methods and a novel approach for the prediction of the effect of mutations. We compare ENCoM to a large number of methods in terms of accuracy and self-consistency. We show that the accuracy of ENCoM is comparable to that of the best existing methods. We show that existing methods are biased towards the prediction of destabilizing mutations and that ENCoM is less biased at predicting stabilizing mutations. PMID:24762569

  15. Survivable virtual optical network embedding with probabilistic network-element failures in elastic optical networks

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Cheng, Lei; Luo, Guangjun; Zhang, Jie; Zhao, Yongli; Ding, Huixia; Zhou, Jing; Wang, Yang

    2015-06-01

    The elastic optical networks can elastically allocate spectrum tailored for various bandwidth requirements. In addition, different virtual optical networks (VONs) formed by different applications or service providers need to be embedded on the common physical optical network, it brings virtual optical network embedding (VONE) problem. There is no precise standard to measure the survivability of VON from the failure probability view and take minimum VON failure probability as an objective in a VONE problem. In this paper, we investigate a survivable VONE problem from a new perspective. Considering probabilistic physical network-element failures, a novel metric, named virtual optical network failure probability (VON-FP), is introduced to evaluate the survivability of VONs in elastic optical networks. Moreover, a failure-probability-aware virtual optical network embedding (FPA-VONE) algorithm is proposed to deploy VONs on the physical network elements with small failure probability, and finally to decrease the VON-FP and enhance the spectrum utilization effectively.

  16. Energy distribution in disordered elastic networks

    NASA Astrophysics Data System (ADS)

    Plaza, Gustavo R.

    2010-09-01

    Disordered networks are found in many natural and artificial materials, from gels or cytoskeletal structures to metallic foams or bones. Here, the energy distribution in this type of networks is modeled, taking into account the orientation of the struts. A correlation between the orientation and the energy per unit volume is found and described as a function of the connectivity in the network and the relative bending stiffness of the struts. If one or both parameters have relatively large values, the struts aligned in the loading direction present the highest values of energy. On the contrary, if these have relatively small values, the highest values of energy can be reached in the struts oriented transversally. This result allows explaining in a simple way remodeling processes in biological materials, for example, the remodeling of trabecular bone and the reorganization in the cytoskeleton. Additionally, the correlation between the orientation, the affinity, and the bending-stretching ratio in the network is discussed.

  17. Elastic Optical Path Network Architecture: Framework for Spectrally-Efficient and Scalable Future Optical Networks

    NASA Astrophysics Data System (ADS)

    Jinno, Masahiko; Takara, Hidehiko; Sone, Yoshiaki; Yonenaga, Kazushige; Hirano, Akira

    This paper presents an elastic optical path network architecture as a novel networking framework to address the looming capacity crunch problem in internet protocol (IP) and optical networks. The basic idea is to introduce elasticity and adaptation into the optical domain to yield spectrally-efficient optical path accommodation, heightened network scalability through IP traffic offloading to the elastic optical layer, and enhanced survivability for serious disasters.

  18. Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins.

    PubMed

    Kurkcuoglu, Zeynep; Doruker, Pemra

    2016-01-01

    Incorporating receptor flexibility in small ligand-protein docking still poses a challenge for proteins undergoing large conformational changes. In the absence of bound structures, sampling conformers that are accessible by apo state may facilitate docking and drug design studies. For this aim, we developed an unbiased conformational search algorithm, by integrating global modes from elastic network model, clustering and energy minimization with implicit solvation. Our dataset consists of five diverse proteins with apo to complex RMSDs 4.7-15 Å. Applying this iterative algorithm on apo structures, conformers close to the bound-state (RMSD 1.4-3.8 Å), as well as the intermediate states were generated. Dockings to a sequence of conformers consisting of a closed structure and its "parents" up to the apo were performed to compare binding poses on different states of the receptor. For two periplasmic binding proteins and biotin carboxylase that exhibit hinge-type closure of two dynamics domains, the best pose was obtained for the conformer closest to the bound structure (ligand RMSDs 1.5-2 Å). In contrast, the best pose for adenylate kinase corresponded to an intermediate state with partially closed LID domain and open NMP domain, in line with recent studies (ligand RMSD 2.9 Å). The docking of a helical peptide to calmodulin was the most challenging case due to the complexity of its 15 Å transition, for which a two-stage procedure was necessary. The technique was first applied on the extended calmodulin to generate intermediate conformers; then peptide docking and a second generation stage on the complex were performed, which in turn yielded a final peptide RMSD of 2.9 Å. Our algorithm is effective in producing conformational states based on the apo state. This study underlines the importance of such intermediate states for ligand docking to proteins undergoing large transitions. PMID:27348230

  19. Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins

    PubMed Central

    Kurkcuoglu, Zeynep; Doruker, Pemra

    2016-01-01

    Incorporating receptor flexibility in small ligand-protein docking still poses a challenge for proteins undergoing large conformational changes. In the absence of bound structures, sampling conformers that are accessible by apo state may facilitate docking and drug design studies. For this aim, we developed an unbiased conformational search algorithm, by integrating global modes from elastic network model, clustering and energy minimization with implicit solvation. Our dataset consists of five diverse proteins with apo to complex RMSDs 4.7–15 Å. Applying this iterative algorithm on apo structures, conformers close to the bound-state (RMSD 1.4–3.8 Å), as well as the intermediate states were generated. Dockings to a sequence of conformers consisting of a closed structure and its “parents” up to the apo were performed to compare binding poses on different states of the receptor. For two periplasmic binding proteins and biotin carboxylase that exhibit hinge-type closure of two dynamics domains, the best pose was obtained for the conformer closest to the bound structure (ligand RMSDs 1.5–2 Å). In contrast, the best pose for adenylate kinase corresponded to an intermediate state with partially closed LID domain and open NMP domain, in line with recent studies (ligand RMSD 2.9 Å). The docking of a helical peptide to calmodulin was the most challenging case due to the complexity of its 15 Å transition, for which a two-stage procedure was necessary. The technique was first applied on the extended calmodulin to generate intermediate conformers; then peptide docking and a second generation stage on the complex were performed, which in turn yielded a final peptide RMSD of 2.9 Å. Our algorithm is effective in producing conformational states based on the apo state. This study underlines the importance of such intermediate states for ligand docking to proteins undergoing large transitions. PMID:27348230

  20. Elastic modeling and migration in Earth models

    NASA Astrophysics Data System (ADS)

    Filhocunha, Carlos Alves

    Migration and inversion of marine seismic data using the elastic wave equation requires the transformation of the recorded pressure data into a vector particle-displacement field. This can be done easily when the recording geometry samples the wavefield both horizontally and vertically. However, only experimental surveys have cables located at different depths. Using a few assumptions, I derive a method for performing this transformation, which is applicable to standard surveys. The assumptions are: smooth water surface, cable nearly parallel to water surface, and perfect seismic-reflection at the water surface. Results in a realistic example, where these assumptions are only partially fulfilled, demonstrate that the method is robust. Elastic, reverse-time migration/inversion schemes in the space-time domain are usually implemented by finite-difference or finite-element methods. When imaging beyond structures, a dynamically accurate scheme must be used. For models characterized by layers with sharp boundaries, traditional finite-difference methods fail to correctly describe the dynamics of the propagation process. Failure comes from the lack of distinction between model and field variables; the same difference operator is applied to discontinuous (model) and continuous (wavefield) components. The problem is solved with a modified finite-difference scheme (dual-operator), which uses long operators for wave-fields, short operators for elastic parameters, Shoenberg-Muir (1989) equivalence relations, and a modified Virieux (1984) staggered grid scheme. Tests show that the dual-operator is dynamically more accurate than traditional finite-difference schemes and comparable to Haskell-Thomson schemes. In structurally complex media, accurate recovery of angle-dependent reflectivities requires elastic prestack migration. Mode separation can be done before or after depth extrapolation. Though more complex, the latter is more complete because it images mode-converted waves

  1. Elastic Modeling and Migration in Earth Models

    NASA Astrophysics Data System (ADS)

    Cunha, Carlos Alves, Filho

    Migration and inversion of marine seismic data using the elastic wave equation requires the transformation of the recorded pressure data into a vector particle-displacement field. This can be done easily when the recording geometry samples the wavefield both horizontally and vertically. However, only experimental surveys have cables located at different depths. Using a few assumptions, I derive a method for performing this transformation, which is applicable to standard surveys. The assumptions are: smooth water surface, cable nearly parallel to water surface, and perfect seismic -reflection at the water surface. Results in a realistic example, where these assumptions are only partially fulfilled, demonstrate that the method is robust. Elastic, reverse-time migration/inversion schemes in the space-time domain are usually implemented by finite -difference or finite-element methods. When imaging beyond structures, a dynamically accurate scheme must be used. For models characterized by layers with sharp boundaries traditional finite-difference methods fail to correctly describe the dynamics of the propagation process. Failure comes from the lack of distinction between model and field variables; the same difference operator is applied to discontinuous (model) and continuous (wavefield) components. The problem is solved with a modified finite-difference scheme (dual -operator), which uses long operators for wavefields, short operators for elastic parameters, Shoenberg-Muir (1989) equivalence relations and a modified Virieux (1984) staggered grid scheme. Tests show that the the dual-operator is dynamically more accurate than traditional finite-difference schemes and comparable to Haskell-Thomson schemes. In structurally complex media, accurate recovery of angle-dependent reflectivities requires elastic prestack migration. Mode separation can be done before or after depth extrapolation. Though more complex, the latter is more complete because it images mode

  2. A Mixed Protein Structure Network and Elastic Network Model Approach to Predict the Structural Communication in Biomolecular Systems: The PDZ2 Domain from Tyrosine Phosphatase 1E As a Case Study.

    PubMed

    Raimondi, Francesco; Felline, Angelo; Seeber, Michele; Mariani, Simona; Fanelli, Francesca

    2013-05-14

    Graph theory is being increasingly used to study the structural communication in biomolecular systems. This requires incorporating information on the system's dynamics, which is time-consuming and not suitable for high-throughput investigations. We propose a mixed Protein Structure Network (PSN) and Elastic Network Model (ENM)-based strategy, i.e., PSN-ENM, for fast investigation of allosterism in biological systems. PSN analysis and ENM-Normal Mode Analysis (ENM-NMA) are implemented in the structural analysis software Wordom, freely available at http://wordom.sourceforge.net/ . The method performs a systematic search of the shortest communication pathways that traverse a protein structure. A number of strategies to compare the structure networks of a protein in different functional states and to get a global picture of communication pathways are presented as well. The approach was validated on the PDZ2 domain from tyrosine phosphatase 1E (PTP1E) in its free (APO) and peptide-bound states. PDZ domains are, indeed, the systems whose structural communication and allosteric features are best characterized both in vitro and in silico. The agreement between predictions by the PSN-ENM method and in vitro evidence is remarkable and comparable to or higher than that reached by more time-consuming computational approaches tested on the same biological system. Finally, the PSN-ENM method was able to reproduce the salient communication features of unbound and bound PTP1E inferred from molecular dynamics simulations. High speed makes this method suitable for high throughput investigation of the communication pathways in large sets of biomolecular systems in different functional states. PMID:26583738

  3. Adaptive Quality of Transmission Control in Elastic Optical Network

    NASA Astrophysics Data System (ADS)

    Cai, Xinran

    Optical fiber communication is becoming increasingly important due to the burgeoning demand in the internet capacity. However, traditional wavelength division multiplexing (WDM) technique fails to address such demand because of its inefficient spectral utilization. As a result, elastic optical networking (EON) has been under extensive investigation recently. Such network allows sub-wavelength and super-wavelength channel accommodation, and mitigates the stranded bandwidth problem in the WDM network. In addition, elastic optical network is also able to dynamically allocate the spectral resources of the network based on channel conditions and impairments, and adaptively control the quality of transmission of a channel. This application requires two aspects to be investigated: an efficient optical performance monitoring scheme and networking control and management algorithms to reconfigure the network in a dynamic fashion. This thesis focuses on the two aspects discussed above about adaptive QoT control. We demonstrated a supervisory channel method for optical signal to noise ratio (OSNR) and chromatic dispersion (CD) monitoring. In addition, our proof-of-principle testbed experiments show successful impairment aware reconfiguration of the network with modulation format switching (MFS) only and MFS combined with lightpath rerouting (LR) for hundred-GHz QPSK superchannels undergoing time-varying OSNR impairment.

  4. Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns

    PubMed Central

    Childs, Dorothee; Grimbs, Sergio; Selbig, Joachim

    2015-01-01

    Motivation: Structural kinetic modelling (SKM) is a framework to analyse whether a metabolic steady state remains stable under perturbation, without requiring detailed knowledge about individual rate equations. It provides a representation of the system’s Jacobian matrix that depends solely on the network structure, steady state measurements, and the elasticities at the steady state. For a measured steady state, stability criteria can be derived by generating a large number of SKMs with randomly sampled elasticities and evaluating the resulting Jacobian matrices. The elasticity space can be analysed statistically in order to detect network positions that contribute significantly to the perturbation response. Here, we extend this approach by examining the kinetic feasibility of the elasticity combinations created during Monte Carlo sampling. Results: Using a set of small example systems, we show that the majority of sampled SKMs would yield negative kinetic parameters if they were translated back into kinetic models. To overcome this problem, a simple criterion is formulated that mitigates such infeasible models. After evaluating the small example pathways, the methodology was used to study two steady states of the neuronal TCA cycle and the intrinsic mechanisms responsible for their stability or instability. The findings of the statistical elasticity analysis confirm that several elasticities are jointly coordinated to control stability and that the main source for potential instabilities are mutations in the enzyme alpha-ketoglutarate dehydrogenase. Contact: dorothee.childs@embl.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26072485

  5. A microchannel flow model for soft tissue elasticity

    NASA Astrophysics Data System (ADS)

    Parker, K. J.

    2014-08-01

    A number of advances, including imaging of tissue displacements, have increased our ability to make measurements of tissue elastic properties of animal and human tissues. Accordingly, the question is increasingly asked, ‘should our data be fit to a viscoelastic model, and if so which one?’ In this paper we focus solely on soft tissues in a functional (non-pathological) state, and develop a model of elastic behavior that is based on the flow of viscous fluids through the extensive network of tissue microchannels in response to applied stress. This behavior can be captured in a 2-parameter model, and the model appears to predict the stress-relaxation behavior and the dispersive shear wave behavior of bovine liver specimens and other soft tissues and phantoms. The relationship of the microchannel flow model to more traditional models is also examined.

  6. Rubber elasticity for percolation network consisting of Gaussian chains

    NASA Astrophysics Data System (ADS)

    Nishi, Kengo; Noguchi, Hiroshi; Sakai, Takamasa; Shibayama, Mitsuhiro

    2015-11-01

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation (EMA) for Hookian spring network to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1, G0, must be equal to G/G0 = (p - 2/f)/(1 - 2/f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels.

  7. Rubber Elasticity for percolation network consisting of Gaussian Chains

    NASA Astrophysics Data System (ADS)

    Nishi, Kengo; Shibayama, Mitsuhiro; Sakai, Takamasa

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation for Hookian spring network (EMA) to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1 ,G0, must be equal to G /G0 = (p - 2 / f) / (1 - 2 / f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA, and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels.

  8. Rubber elasticity for percolation network consisting of Gaussian chains

    SciTech Connect

    Nishi, Kengo E-mail: sakai@tetrapod.t.u-tokyo.ac.jp Noguchi, Hiroshi; Shibayama, Mitsuhiro E-mail: sakai@tetrapod.t.u-tokyo.ac.jp; Sakai, Takamasa E-mail: sakai@tetrapod.t.u-tokyo.ac.jp

    2015-11-14

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation (EMA) for Hookian spring network to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1, G{sub 0}, must be equal to G/G{sub 0} = (p − 2/f)/(1 − 2/f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels.

  9. Rubber elasticity for percolation network consisting of Gaussian chains.

    PubMed

    Nishi, Kengo; Noguchi, Hiroshi; Sakai, Takamasa; Shibayama, Mitsuhiro

    2015-11-14

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation (EMA) for Hookian spring network to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1, G0, must be equal to G/G0 = (p - 2/f)/(1 - 2/f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels. PMID:26567682

  10. Dynamic Elasticity Model of Resilin Biopolymers

    NASA Astrophysics Data System (ADS)

    Hu, Xiao; Duki, Solomon

    2013-03-01

    Resilin proteins are `super elastic rubbers' in the flight and jumping systems of most insects, and can extend and retract millions of times. Natural resilin exhibits high resilience (> 95%) under high-frequency conditions, and could be stretched to over 300% of its original length with a low elastic modulus of 0.1-3 MPa. However, insight into the underlying molecular mechanisms responsible for resilin elasticity remains undefined. We report on the dynamic structure transitions and functions of full length resilin from fruit fly (D. melanogaster CG15920) and its different functional domains. A dynamic computational model is proposed to explain the super elasticity and energy conversion mechanisms of resilin, providing important insight into structure-function relationships for resilins, as well as other elastomeric proteins. A strong beta-turn transition was experimentally identified in the full length resilin and its non-elastic domains (Exon III). Changes in periodic long-range order were demonstrated during this transition, induced either by thermal or mechanical inputs, to confirm the universality of proposed mechanism. Further, this model offers new options for designing protein-based biopolymers with tunable material applications.

  11. Elastic model for dinucleosome structure and energy

    NASA Astrophysics Data System (ADS)

    Fatemi, Hashem; Khodabandeh, Fatemeh; Mohammad-Rafiee, Farshid

    2016-04-01

    The equilibrium structure of a dinucleosome is studied using an elastic model that takes into account the force and torque balance conditions. Using the proper boundary conditions, it is found that the conformational energy of the problem does not depend on the length of the linker DNA. In addition it is shown that the two histone octamers are almost perpendicular to each other, and the linker DNA in short lengths is almost straight. These findings could shed some light on the role of DNA elasticity in the chromatin structure.

  12. A collagen and elastic network in the wing of the bat.

    PubMed Central

    Holbrook, K A; Odland, G F

    1978-01-01

    Bundles of collagen fibrils, elastic fibres and fibroblasts are organized into a network that lies in the plane of a large portion of the bat wing. By ultrastructural (TEM and SEM) and biochemical analyses it was found that individual bundles of the net are similar to elastic ligaments. Although elastic fibres predominate, they are integrated and aligned in parallel with small bundles of collagen. A reticulum of fibroblasts, joined by focal junctions, forms a cellular framework throughout each bundle. Because of the unique features of the fibre bundles of the bat's wing, in particular their accessibility, and the parallel alignment of the collagen fibrils and elastic fibres in each easily isolatable fibre bundle, they should prove a most valuable model for connective tissue studies, particularly for the study of collagen-elastin interactions. Images Fig. 1 Fig. 2 Fig. 3 Fig. 4 Fig. 5 Fig. 6 Fig. 7 Fig. 8 Fig. 9 Fig. 10 Fig. 11 Fig. 12 PMID:649500

  13. Hypo-Elastic Model for Lung Parenchyma

    SciTech Connect

    Freed, Alan D.; Einstein, Daniel R.

    2012-03-01

    A simple elastic isotropic constitutive model for the spongy tissue in lung is derived from the theory of hypoelasticity. The model is shown to exhibit a pressure dependent behavior that has been interpreted by some as indicating extensional anisotropy. In contrast, we show that this behavior arises natural from an analysis of isotropic hypoelastic invariants, and is a likely result of non-linearity, not anisotropy. The response of the model is determined analytically for several boundary value problems used for material characterization. These responses give insight into both the material behavior as well as admissible bounds on parameters. The model is characterized against published experimental data for dog lung. Future work includes non-elastic model behavior.

  14. Modeling orthotropic elasticity, localized plasticity and fracture in trabecular bone

    NASA Astrophysics Data System (ADS)

    O'Connor, D. T.; Elkhodary, K. I.; Fouad, Y.; Greene, M. S.; Sabet, F. A.; Qian, J.; Zhang, Y.; Liu, W. K.; Jasiuk, I.

    2016-05-01

    This work develops a model for the mechanical response of trabecular bone including plasticity, damage and fracture. It features a resultant lamellar orientation that captures trabecular strut anisotropic elasticity, and introduces asymmetric J2 plasticity with isotropic hardening to capture evolving strut tensile and compressive dissipative properties. A continuum compatibility based damage and fracture criterion is also proposed to model fracture surface generation. We investigated fracture of a trabecular bone network under a compressive load, for which failure modes of both tension and compression were identified at the strut level. The predicted trabecular network response was found to fall within the range of experimental results reported in literature. We also investigated the response of idealized struts under compression, tension and bending using our model. Individual struts were found to exhibit micro-buckling under compression and micro-necking under tension. These instabilities are however masked by the multiplicity and complexity of strut orientations at the trabecular network level.

  15. Modeling orthotropic elasticity, localized plasticity and fracture in trabecular bone

    NASA Astrophysics Data System (ADS)

    O'Connor, D. T.; Elkhodary, K. I.; Fouad, Y.; Greene, M. S.; Sabet, F. A.; Qian, J.; Zhang, Y.; Liu, W. K.; Jasiuk, I.

    2016-09-01

    This work develops a model for the mechanical response of trabecular bone including plasticity, damage and fracture. It features a resultant lamellar orientation that captures trabecular strut anisotropic elasticity, and introduces asymmetric J2 plasticity with isotropic hardening to capture evolving strut tensile and compressive dissipative properties. A continuum compatibility based damage and fracture criterion is also proposed to model fracture surface generation. We investigated fracture of a trabecular bone network under a compressive load, for which failure modes of both tension and compression were identified at the strut level. The predicted trabecular network response was found to fall within the range of experimental results reported in literature. We also investigated the response of idealized struts under compression, tension and bending using our model. Individual struts were found to exhibit micro-buckling under compression and micro-necking under tension. These instabilities are however masked by the multiplicity and complexity of strut orientations at the trabecular network level.

  16. Shape memory polymer network with thermally distinct elasticity and plasticity

    PubMed Central

    Zhao, Qian; Zou, Weike; Luo, Yingwu; Xie, Tao

    2016-01-01

    Stimuli-responsive materials with sophisticated yet controllable shape-changing behaviors are highly desirable for real-world device applications. Among various shape-changing materials, the elastic nature of shape memory polymers allows fixation of temporary shapes that can recover on demand, whereas polymers with exchangeable bonds can undergo permanent shape change via plasticity. We integrate the elasticity and plasticity into a single polymer network. Rational molecular design allows these two opposite behaviors to be realized at different temperature ranges without any overlap. By exploring the cumulative nature of the plasticity, we demonstrate easy manipulation of highly complex shapes that is otherwise extremely challenging. The dynamic shape-changing behavior paves a new way for fabricating geometrically complex multifunctional devices. PMID:26824077

  17. Elastic models of vocal fold tissues.

    PubMed

    Alipour-Haghighi, F; Titze, I R

    1991-09-01

    Elastic properties of canine vocal fold tissue (muscle and mucosa) were obtained through a series of experiments conducted in vitro and were modeled mathematically. The elastic properties play a significant role in quantitative analysis of vocal fold vibrations and theory of pitch control. Samples of vocalis muscle and mucosa were dissected and prepared from dog larynges a few minutes premortem and kept in a Krebs solution at a temperature of 37 +/- 1 degrees C and a pH of 7.4 +/- 0.05. Samples of muscle tissue and mucosa were stretched and released in a slow, sinusoidal fashion. Force and displacement of the samples were measured with a dual-servo system (ergometer). After digitization, stress-strain data for samples of muscle tissue and cover tissue were averaged. The stress-strain data were then fitted numerically by polynomial and exponential models. PMID:1939897

  18. Elastic model for crimped collagen fibrils

    NASA Technical Reports Server (NTRS)

    Freed, Alan D.; Doehring, Todd C.

    2005-01-01

    A physiologic constitutive expression is presented in algorithmic format for the nonlinear elastic response of wavy collagen fibrils found in soft connective tissues. The model is based on the observation that crimped fibrils in a fascicle have a three-dimensional structure at the micron scale that we approximate as a helical spring. The symmetry of this wave form allows the force/displacement relationship derived from Castigliano's theorem to be solved in closed form: all integrals become analytic. Model predictions are in good agreement with experimental observations for mitral-valve chordae tendinece.

  19. Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model.

    PubMed

    Li, Chunhua; Lv, Dashuai; Zhang, Lei; Yang, Feng; Wang, Cunxin; Su, Jiguo; Zhang, Yang

    2016-07-01

    Riboswitches are noncoding mRNA segments that can regulate the gene expression via altering their structures in response to specific metabolite binding. We proposed a coarse-grained Gaussian network model (GNM) to examine the unfolding and folding dynamics of adenosine deaminase (add) A-riboswitch upon the adenine dissociation, in which the RNA is modeled by a nucleotide chain with interaction networks formed by connecting adjoining atomic contacts. It was shown that the adenine binding is critical to the folding of the add A-riboswitch while the removal of the ligand can result in drastic increase of the thermodynamic fluctuations especially in the junction regions between helix domains. Under the assumption that the native contacts with the highest thermodynamic fluctuations break first, the iterative GNM simulations showed that the unfolding process of the adenine-free add A-riboswitch starts with the denature of the terminal helix stem, followed by the loops and junctions involving ligand binding pocket, and then the central helix domains. Despite the simplified coarse-grained modeling, the unfolding dynamics and pathways are shown in close agreement with the results from atomic-level MD simulations and the NMR and single-molecule force spectroscopy experiments. Overall, the study demonstrates a new avenue to investigate the binding and folding dynamics of add A-riboswitch molecule which can be readily extended for other RNA molecules. PMID:27394096

  20. Approach to the unfolding and folding dynamics of add A-riboswitch upon adenine dissociation using a coarse-grained elastic network model

    NASA Astrophysics Data System (ADS)

    Li, Chunhua; Lv, Dashuai; Zhang, Lei; Yang, Feng; Wang, Cunxin; Su, Jiguo; Zhang, Yang

    2016-07-01

    Riboswitches are noncoding mRNA segments that can regulate the gene expression via altering their structures in response to specific metabolite binding. We proposed a coarse-grained Gaussian network model (GNM) to examine the unfolding and folding dynamics of adenosine deaminase (add) A-riboswitch upon the adenine dissociation, in which the RNA is modeled by a nucleotide chain with interaction networks formed by connecting adjoining atomic contacts. It was shown that the adenine binding is critical to the folding of the add A-riboswitch while the removal of the ligand can result in drastic increase of the thermodynamic fluctuations especially in the junction regions between helix domains. Under the assumption that the native contacts with the highest thermodynamic fluctuations break first, the iterative GNM simulations showed that the unfolding process of the adenine-free add A-riboswitch starts with the denature of the terminal helix stem, followed by the loops and junctions involving ligand binding pocket, and then the central helix domains. Despite the simplified coarse-grained modeling, the unfolding dynamics and pathways are shown in close agreement with the results from atomic-level MD simulations and the NMR and single-molecule force spectroscopy experiments. Overall, the study demonstrates a new avenue to investigate the binding and folding dynamics of add A-riboswitch molecule which can be readily extended for other RNA molecules.

  1. Continuity Aware Spectrum Allocation Schemes for Virtual Optical Network Embedding in Elastic Optical Networks

    NASA Astrophysics Data System (ADS)

    Wang, Wei; Zhao, Yongli; He, Ruiying; Yu, Xiaosong; Zhang, Jie; Zheng, Haomian; Lin, Yi; Han, Jianrui

    2016-05-01

    Optical network virtualization has been studied as a promising technique for optical network resources provisioning. In the virtualization context of Elastic Optical Network (EON), Virtual Optical Network Embedding (VONE) is investigated as a key issue for allocating spectrum resources to VON requests. This paper discusses the continuity constraint for the VONE problem in EONs, and presents three continuity-aware spectrum allocation schemes according to strict and relaxed continuity constraints. We have demonstrated the proposed schemes on emulated testbed to verify the feasibility of composing VON with discontiguous spectrum resources. Additionally, the performances of the proposed schemes are compared via simulation in terms of blocking probability, spectrum resource utilization and discontinuity degree.

  2. Nonlinear Elasticity: From Single Chain to Networks and Gels

    NASA Astrophysics Data System (ADS)

    Dobrynin, Andrey; Carrillo, Jan-Michael; Mackintosh, Fred

    2014-03-01

    Biological and polymeric networks show highly nonlinear stress-strain behavior leading to material hardening with increasing deformation. Using a combination of theoretical analysis and molecular dynamics simulations we develop a model of network deformation that describes nonlinear mechanical properties of a broad variety of biological and polymeric networks and gels by relating their macroscopic strain-hardening behavior with molecular parameters of the network strands. The starting point of our approach is a nonlinear force/elongation relation for discrete chain model with varying bending rigidity. This theory provides a universal relationship between the strain-dependent network modulus and the network deformation as a function of the first invariant and chain elongation ratio that depends on a ratio of the unperturbed chain size to chain dimension in a fully extended conformation. The model predictions for the nonlinear shear modulus and differential shear modulus for uniaxial and shear deformations are in a very good agreement with both the results of molecular dynamics simulations of networks and with experimental data for biopolymer networks of actin, collagen, fibrin, vimentin, neurofilaments, and pectin. NSF-DMR-1004576

  3. Flexible wavelength de-multiplexer for elastic optical networking.

    PubMed

    Zhou, Rui; Gutierrez Pascual, M Deseada; Anandarajah, Prince M; Shao, Tong; Smyth, Frank; Barry, Liam P

    2016-05-15

    We report an injection locked flexible wavelength de-multiplexer (de-mux) that shows 24-h frequency stability of 1 kHz for optical comb-based elastic optical networking applications. We demonstrate 50 GHz, 87.5 GHz equal spacing and 6.25G-25G-50 GHz, 75G-50G-100 GHz unequal spacing for the de-multiplexer outputs. We also implement an unequally spaced (75G-50G-100 GHz), mixed symbol rate (12.5 GBaud and 40 GBaud) and modulation format (polarization division multiplexed quadrature phase shift keying and on-off keying) wavelength division multiplexed transmission system using the de-multiplexer outputs. The results show 0.6 dB receiver sensitivity penalty, at 7% hard decision forward error correction coding limit, of the 100 km transmitted de-mux outputs when compared to comb source seeding laser back-to-back. PMID:27176972

  4. Modeling an elastic swimmer driven at resonance

    NASA Astrophysics Data System (ADS)

    Yeh, Peter; Alexeev, Alexander

    2012-11-01

    Flexibility plays a vital role in the locomotion of aquatic animals. Using three dimensional computer simulations, we examine a flexible swimmer submerged in a viscous fluid with Reynolds number 100. The swimmer is modeled as a thin elastic rectangular plate, actuated at its leading edge to oscillate in a sinusoidal motion vertically at constant frequency and amplitude. The Lattice Boltzmann model is used to simulate an incompressible viscous fluid. The swimmer is free to move horizontally, and we measure the resulting steady state forward velocity, input power, and swimming performance. Our calculations reveal that both steady swimming velocity and performance strongly depend on the actuated frequency. Specifically, the maximum forward velocity is achieved near resonance, but the performance is maximized at a frequency about 1.8 times that at resonance. We visualize the vortex structures emerging in the fluid around swimmer and show how they contribute to the swimmer's forward motion.

  5. A neural network for controlling the configuration of frame structure with elastic members

    NASA Technical Reports Server (NTRS)

    Tsutsumi, Kazuyoshi

    1989-01-01

    A neural network for controlling the configuration of frame structure with elastic members is proposed. In the present network, the structure is modeled not by using the relative angles of the members but by using the distances between the joint locations alone. The relationship between the environment and the joints is also defined by their mutual distances. The analog neural network attains the reaching motion of the manipulator as a minimization problem of the energy constructed by the distances between the joints, the target, and the obstacles. The network can generate not only the final but also the transient configurations and the trajectory. This framework with flexibility and parallelism is very suitable for controlling the Space Telerobotic systems with many degrees of freedom.

  6. A model for compression-weakening materials and the elastic fields due to contractile cells

    NASA Astrophysics Data System (ADS)

    Rosakis, Phoebus; Notbohm, Jacob; Ravichandran, Guruswami

    2015-12-01

    We construct a homogeneous, nonlinear elastic constitutive law that models aspects of the mechanical behavior of inhomogeneous fibrin networks. Fibers in such networks buckle when in compression. We model this as a loss of stiffness in compression in the stress-strain relations of the homogeneous constitutive model. Problems that model a contracting biological cell in a finite matrix are solved. It is found that matrix displacements and stresses induced by cell contraction decay slower (with distance from the cell) in a compression weakening material than linear elasticity would predict. This points toward a mechanism for long-range cell mechanosensing. In contrast, an expanding cell would induce displacements that decay faster than in a linear elastic matrix.

  7. Deformation of an Elastic beam due to Viscous Flow in an Embedded Channel Network

    NASA Astrophysics Data System (ADS)

    Matia, Yoav; Gat, Amir

    2015-11-01

    Elastic deformation due to embedded fluidic networks is currently studied in the context of soft-actuators and soft-robotic applications. In this work, we analyze the time dependent interaction between elastic deformation of a slender beam and viscous flow within a long serpentine channel, embedded in the elastic structure. The channel is positioned asymmetrically with regard to the midplane of the elastic beam, and thus pressure within the channel creates a local moment deforming the beam. We focus on creeping flows and small deformations of the elastic beam and obtain, in leading order, a convection-diffusion equation governing the pressure-field within the serpentine channel. The beam time-dependent deformation is then obtained as a function of the pressure-field and the geometry of the embedded network. This relation enables the design of complex time-dependent deformation patterns of beams with embedded channel networks. Our theoretical results were illustrated and verified by numerical computations.

  8. Multipath protection for data center services in OpenFlow-based software defined elastic optical networks

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Cheng, Lei; Yuan, Jian; Zhang, Jie; Zhao, Yongli; Lee, Young

    2015-06-01

    With the rapid growth of data center services, the elastic optical network is a very promising networking architecture to interconnect data centers because it can elastically allocate spectrum tailored for various bandwidth requirements. In case of a link failure, to ensure a high-level quality of service (QoS) for user request after the failure becomes a research focus. In light of it, in this paper, we propose and experimentally demonstrate multipath protection for data center services in OpenFlow-based software defined elastic optical network testbed aiming at improving network reliability. We first propose an OpenFlow-based software defined elastic optical network architecture for data center service protection. Then, based on the proposed architecture, multipath protection scheme is figured based on the importance level of the service. To implement the proposed scheme in the architecture, OpenFlow protocol is extended to support multipath protection in elastic optical network. The performance of our proposed multipath protection scheme is evaluated by means of experiment on our OpenFlow-based testbed. The feasibility of our proposed scheme is also demonstrated in software defined elastic optical networks.

  9. Multiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.

    PubMed

    Fossépré, Mathieu; Leherte, Laurence; Laaksonen, Aatto; Vercauteren, Daniel P

    2016-09-01

    Despite progress in computer modeling, most biological processes are still out of reach when using all-atom (AA) models. Coarse-grained (CG) models allow classical molecular dynamics (MD) simulations to be accelerated. Although simplification of spatial resolution at different levels is often investigated, simplification of the CG potential in itself has been less common. CG potentials are often similar to AA potentials. In this work, we consider the design and reliability of purely mechanical CG models of the μ opioid receptor (μOR), a G protein-coupled receptor (GPCR). In this sense, CG force fields (FF) consist of a set of holonomic constraints guided by an elastic network model (ENM). Even though ENMs are used widely to perform normal mode analysis (NMA), they are not often implemented as a single FF in the context of MD simulations. In this work, various ENM-like potentials were investigated by varying their force constant schemes and connectivity patterns. A method was established to systematically parameterize ENM-like potentials at different spatial resolutions by using AA data. To do so, new descriptors were introduced. The choice of conformation descriptors that also include flexibility information is important for a reliable parameterization of ENMs with different degrees of sensitivity. Hence, ENM-like potentials, with specific parameters, can be sufficient to accurately reproduce AA MD simulations of μOR at highly coarse-grained resolutions. Therefore, the essence of the flexibility properties of μOR can be captured with simple models at different CG spatial resolutions, opening the way to mechanical approaches to understanding GPCR functions. Graphical Abstract All atom structure, residue interaction network and coarse-grained elastic network models of the μ opioid receptor (μOR). PMID:27566318

  10. Determination of the elastic constants of a composite plate using wavelet transforms and neural networks

    NASA Astrophysics Data System (ADS)

    Yang, Jing; Cheng, Jianchun; Berthelot, Yves H.

    2002-03-01

    An inverse method based on a combination of the wavelet transform and artificial neural networks is presented. The method is used to recover the elastic constants of a fiber-reinforced composite plate from experimental measurements of ultrasonic Lamb waves generated and detected with lasers. In this method, the elastic constants are not recovered from the dispersion curves but rather directly from the measured waveforms. Transient waveforms obtained by numerical simulations for different elastic constants are used as input to train the neural network. The wavelet transform is used to extract the eigenvectors from the Lamb wave signals to simplify the structure of the neutral network. The eigenvectors are then introduced into a multilayer internally recurrent neural network with a back-propagation algorithm. Finally, experimental waveforms recoded on a titanium-graphite composite plate are used as input to recover the elastic constants of the material.

  11. Studies in cutaneous aging: I. The elastic fiber network

    SciTech Connect

    Braverman, I.M.; Fonferko, E.

    1982-05-01

    We studied by light and electron microscopy the elastic fibers in he sun exposed and sun protected skin of normal and psoriatic individuals of different ages in order to separate the changes of actinic damage from those of chronological aging. The sun exposed skin showed 2 types of elastic fiber abnormalities-one related to actinic damage and the other to chronological aging. The sun protected buttock skin showed only the latter. From ages 30 to 70, a minority of the elastic fibers exhibited abnormalities that appeared to represent a process of fiber disintegration. After age 70, the majority of elastic fibers showed these abnormalities. These abnormalities were present without accompanying inflammatory cells. Also, there was morphological evidence of continuing synthesis of elastic fibers during the lifetime of these subjects, except that from ages 50-93, the fibers appeared to be loosely, rather than compactly, assembled. Incubation of dermal slices from buttock skin of young adults with porcine pancreatic elastase and bovine chymotrypsin produced elastic fiber degradation that closely simulated the changes that were observed in aged sun protected skin. Researcher propose that one of the features of cutaneous aging is a slow, spontaneous, progressive degradative process inherent in the elastic fiber that can be enzymatically accelerated from decades to hours by elastase and chymotrypsin.

  12. Entropic elasticity of end adsorbed polymer chains: The spectrin network of red blood cells as C*-gel

    NASA Astrophysics Data System (ADS)

    Everaers, Ralf; Graham, Ian S.; Zuckermann, Martin J.; Sackmann, Erich

    1996-03-01

    We use Monte Carlo methods to investigate the end-to-end distance distribution and entropic elasticity of self-avoiding walks in a three-dimensional half-space with both ends adsorbed on the limiting surface. The obtained distributions are well described by the Redner-des Cloizeaux (RdC) ansatz q(x)=Cxθ exp(-(Kx)t), x being the rescaled length. Using the recent solution of the junction affine model for networks of RdC springs we apply the results to the cytoskeleton of the red blood cell (RBC), a two-dimensional network of spectrin molecules which is attached to the inner surface of the erythrocyte membrane. The shear moduli predicted for a noninteracting surface are in close agreement with simulation results by Boal for a bead-spring model of the spectrin network. Moreover, we calculate stress-strain relations for finite deformations. In particular for a network which is fully adsorbed on the bilayer we find a strongly nonlinear elastic response. Our results suggest that the elastic properties of RBCs cannot be obtained within the usual Gaussian models and depend sensitively on the degree of adsorption of the spectrin network.

  13. Modeling the effect of elastic point contact on dynamic response

    NASA Astrophysics Data System (ADS)

    Photiadis, Douglas M.; Goldstein, David J.; Willey, Jefferson M.

    2016-02-01

    We present a general, theoretical model describing the three-dimensional elastic behavior of point contacts. We provide a prescription for employing the model in a variety of physical systems and describe in detail how the model enables the use of lower-dimensional dynamic models while including approximate three-dimensional behavior of elastic point contacts. We conduct a series of experiments to validate the model for extensional and cantilever oscillators, and find good agreement between our measurements and the predictions of the model. We observe that the phenomenological effects of elastic point contacts can be significant and believe that our model will be useful to a broad range of research and engineering disciplines.

  14. Determination of elastic properties of a film-substrate system by using the neural networks

    NASA Astrophysics Data System (ADS)

    Xu, Baiqiang; Shen, Zhonghua; Ni, Xiaowu; Wang, Jijun; Guan, Jianfei; Lu, Jian

    2004-12-01

    An inverse method based on artificial neural network (ANN) is presented to determine the elastic properties of films from laser-genrated surface waves. The surface displacement responses are used as the inputs for the ANN model; the outputs of the ANN are the Young's modulus, density, Poisson's ratio, and thickness of the film. The finite element method is used to calculate the surface displacement responses in a film-substrate system. Levenberg Marquardt algorithm is used as numerical optimization to speed up the training process for the ANN model. In this method, the materials parameters are not recovered from the dispersion curves but rather directly from the transient surface displacement. We have also found that this procedure is very efficient for determining the materials parameters of layered systems.

  15. Experimental demonstration of elastic optical networks based on enhanced software defined networking (eSDN) for data center application.

    PubMed

    Zhang, Jie; Yang, Hui; Zhao, Yongli; Ji, Yuefeng; Li, Hui; Lin, Yi; Li, Gang; Han, Jianrui; Lee, Young; Ma, Teng

    2013-11-01

    Due to the high burstiness and high-bandwidth characteristics of the applications, data center interconnection by elastic optical networks have attracted much attention of network operators and service providers. Many data center applications require lower delay and higher availability with the end-to-end guaranteed quality of service. In this paper, we propose and implement a novel elastic optical network based on enhanced software defined networking (eSDN) architecture for data center application, by introducing a transport-aware cross stratum optimization (TA-CSO) strategy. eSDN can enable cross stratum optimization of application and elastic optical network stratum resources and provide the elastic physical layer parameter adjustment, e.g., modulation format and bandwidth. We have designed and verified experimentally software defined path provisioning on our testbed with four real OpenFlow-enabled elastic optical nodes for data center application. The overall feasibility and efficiency of the proposed architecture is also experimentally demonstrated and compared with individual CSO and physical layer adjustment strategies in terms of path setup/release/adjustment latency, blocking probability and resource occupation rate. PMID:24216922

  16. Models for elastic shells with incompatible strains

    PubMed Central

    Lewicka, Marta; Mahadevan, L.; Pakzad, Mohammad Reza

    2014-01-01

    The three-dimensional shapes of thin lamina, such as leaves, flowers, feathers, wings, etc., are driven by the differential strain induced by the relative growth. The growth takes place through variations in the Riemannian metric given on the thin sheet as a function of location in the central plane and also across its thickness. The shape is then a consequence of elastic energy minimization on the frustrated geometrical object. Here, we provide a rigorous derivation of the asymptotic theories for shapes of residually strained thin lamina with non-trivial curvatures, i.e. growing elastic shells in both the weakly and strongly curved regimes, generalizing earlier results for the growth of nominally flat plates. The different theories are distinguished by the scaling of the mid-surface curvature relative to the inverse thickness and growth strain, and also allow us to generalize the classical Föppl–von Kármán energy to theories of prestrained shallow shells. PMID:24808750

  17. A mesoscopic network model for permanent set in crosslinked elastomers

    SciTech Connect

    Weisgraber, T H; Gee, R H; Maiti, A; Clague, D S; Chinn, S; Maxwell, R S

    2009-01-29

    A mesoscopic computational model for polymer networks and composites is developed as a coarse-grained representation of the composite microstructure. Unlike more complex molecular dynamics simulations, the model only considers the effects of crosslinks on mechanical behavior. The elastic modulus, which depends only on the crosslink density and parameters in the bond potential, is consistent with rubber elasticity theory, and the network response satisfies the independent network hypothesis of Tobolsky. The model, when applied to a commercial filled silicone elastomer, quantitatively reproduces the experimental permanent set and stress-strain response due to changes in the crosslinked network from irradiation.

  18. Exploring elasticity and energy dissipation in mussel-inspired hydrogel transient networks

    NASA Astrophysics Data System (ADS)

    Grindy, Scott; Learsch, Robert; Holten-Andersen, Niels

    Dynamic, reversible crosslinks have been shown to specifically control the mechanical properties of a wide variety of mechanically tough and resilient biomaterials. We have shown that reversible histidine-metal ion interactions, known to contribute to the strong mechanical properties and self-healing nature of mussel byssal threads, can be used to control and engineer the temporally-hierarchical mechanical properties of model hydrogels orthogonally from the spatial structure of the material. Here, we explore the scaling relationships in our model networks to further inform our abilities to control the relative elasticity and energy dissipation on hierarchical timescales. Scaling arguments suggest that the elasticity is dominated by long-range entanglements, while the dissipation is controlled by the exchange kinetics of the transient crosslinks. Further, we show that by using UV light, we can further control the viscoelastic properties of our mussel-inspired hydrogels in situ. This process opens the door for creating biocompatible hydrogel materials with arbitrary spatial control over their viscoelastic mechanical properties. Overall, we show that by understanding the interplay between bio-inspired dynamic crosslinks and soft matter physics allows us to rationally design high-strength hydrogels for specific states of dynamic loading.

  19. Elasticity and photoelasticity relationships for polyethylene terephthalate fiber networks by molecular simulation.

    PubMed

    Nayak, Kapileswar; Das, Sushanta; Nanavati, Hemant

    2008-01-01

    We present a framework for the development of elasticity and photoelasticity relationships for polyethylene terephthalate fiber networks, incorporating aspects of the primary molecular structure. Semicrystalline polymeric fiber networks are modeled as sequentially arranged crystalline and amorphous regions. Rotational isomeric states-Monte Carlo simulations of amorphous chains of up to 360 bonds (degree of polymerization, DP=60), confined between and bridging infinite impenetrable crystalline walls, have been characterized by Omega, the probability density of the intercrystal separation h, and Deltabeta, the polarizability anisotropy. ln Omega and Deltabeta have been modeled as functions of h, yielding the chain deformation relationships. The development has been extended to the fiber network to yield the photoelasticity relationships. We execute our framework by fitting to experimental stress-elongation data and employing the single fitted parameter to directly predict the birefringence-elongation behavior, without any further fitting. Incorporating the effect of strain-induced crystallization into the framework makes it physically more meaningful and yields accurate predictions of the birefringence-elongation behavior. PMID:18190221

  20. Pore network microarchitecture influences human cortical bone elasticity during growth and aging.

    PubMed

    Bala, Yohann; Lefèvre, Emmanuelle; Roux, Jean-Paul; Baron, Cécile; Lasaygues, Philippe; Pithioux, Martine; Kaftandjian, Valérie; Follet, Hélène

    2016-10-01

    Cortical porosity is a major determinant of bone strength. Haversian and Volkmann׳s canals are׳seen' as pores in 2D cross-section but fashion a dynamic network of interconnected channels in 3D, a quantifiable footprint of intracortical remodeling. Given the changes in bone remodeling across life, we hypothesized that the 3D microarchitecture of the cortical pore network influences its stiffness during growth and ageing. Cubes of cortical bone of 2 mm side-length were harvested in the distal 1/3 of the fibula in 13 growing children (mean age±SD: 13±4 yrs) and 16 adults (age: 75±13 yrs). The cubes were imaged using desktop micro-CT (8.14µm isotropic voxel size). Pores were segmented as a solid to assess pore volume fraction, number, diameter, separation, connectivity and structure model index. Elastic coefficients were derived from measurements of ultrasonic bulk compression and shear wave velocities and apparent mass density. The pore volume fraction did not significantly differ between children and adults but originates from different microarchitectural patterns. Compared to children, adults had 42% (p=0.033) higher pore number that were more connected (Connective Density: +205%, p=0.001) with a 18% (p=0.007) lower pore separation. After accounting for the contribution of pore volume fraction, axial elasticity in traction-compression mode was significantly correlated with better connectivity in growing children and with pore separation among adults. The changes in intracortical remodeling across life alter the distribution, size and connectedness of the channels from which cortical void fraction originates. These alterations in pore network microarchitecture participate in changes in compressive and shear mechanical behavior, partly in a porosity-independent manner. The assessment of pore volume fraction (i.e., porosity) provides only a limited understanding of the role of cortical void volume fraction in its mechanical properties. PMID:27389322

  1. Model-based reconstructive elasticity imaging of deep venous thrombosis.

    PubMed

    Aglyamov, Salavat; Skovoroda, Andrei R; Rubin, Jonathan M; O'Donnell, Matthew; Emelianov, Stanislav Y

    2004-05-01

    Deep venous thrombosis (DVT) and its sequela, pulmonary embolism, is a significant clinical problem. Once detected, DVT treatment is based on the age of the clot. There are no good noninvasive methods, however, to determine clot age. Previously, we demonstrated that imaging internal mechanical strains can identify and possibly age thrombus in a deep vein. In this study the deformation geometry for DVT elasticity imaging and its effect on Young's modulus estimates is addressed. A model-based reconstruction method is presented to estimate elasticity in which the clot-containing vessel is modeled as a layered cylinder. Compared to an unconstrained approach in reconstructive elasticity imaging, the proposed model-based approach has several advantages: only one component of the strain tensor is used; the minimization procedure is very fast; the method is highly efficient because an analytic solution of the forward elastic problem is used; and the method is not very sensitive to the details of the external load pattern--a characteristic that is important for free-hand, external, surface-applied deformation. The approach was tested theoretically using a numerical model, and experimentally on both tissue-like phantoms and an animal model of DVT. Results suggest that elasticity reconstruction may prove to be a practical adjunct to triplex scanning to detect, diagnose, and stage DVT. PMID:15217230

  2. The Modified Semidirect Onlay Technique With Articulated Elastic Model.

    PubMed

    Papazoglou, Efstratios; Diamantopoulou, Sofia

    2015-12-01

    The modified semidirect onlay technique with articulated elastic model involves the fabrication of a stone model that is quickly mounted on an articulator and it includes an elastic part that enables the fabrication of a restoration with proper occlusal anatomy. The technique overcomes the disadvantages of the direct technique such as polymerization shrinkage stress and difficulty in achieving proper contours and, compared to the indirect technique, treatment is completed in a single appointment, without laboratory cost. The novelty of the technique is that, since the restoration is fabricated on an articulated model it eliminates time for occlusal adjustments. PMID:26767243

  3. Modeling of Carbon Nanotube Composites Based on Nonlocal Elasticity Approach

    NASA Astrophysics Data System (ADS)

    Alavinasab, Ali; Jha, Ratneshwar; Ahmadi, G.

    2014-01-01

    Nonlocal continuum theory is studied for modeling stress distributions in nanocomposites. The second-order approximation in nonlocal theory is considered since the first-order approximation leads to an unacceptable solution. A representative volume element (RVE) of CNT composite is utilized to derive unknown constants in the nonlocal theory model. Stress distributions in RVE using nonlocal theory, classical elasticity, and finite element method are obtained. All three approaches yield the same force, but classical elasticity gives an incorrect value of first moment. Wave propagation studies show that the dispersion curve obtained by nonlocal theory is quite close to the atomic Born-von Karman model.

  4. Modeling the Citation Network by Network Cosmology

    PubMed Central

    Xie, Zheng; Ouyang, Zhenzheng; Zhang, Pengyuan; Yi, Dongyun; Kong, Dexing

    2015-01-01

    Citation between papers can be treated as a causal relationship. In addition, some citation networks have a number of similarities to the causal networks in network cosmology, e.g., the similar in-and out-degree distributions. Hence, it is possible to model the citation network using network cosmology. The casual network models built on homogenous spacetimes have some restrictions when describing some phenomena in citation networks, e.g., the hot papers receive more citations than other simultaneously published papers. We propose an inhomogenous causal network model to model the citation network, the connection mechanism of which well expresses some features of citation. The node growth trend and degree distributions of the generated networks also fit those of some citation networks well. PMID:25807397

  5. Multiscale approach including microfibril scale to assess elastic constants of cortical bone based on neural network computation and homogenization method.

    PubMed

    Barkaoui, Abdelwahed; Chamekh, Abdessalem; Merzouki, Tarek; Hambli, Ridha; Mkaddem, Ali

    2014-03-01

    The complexity and heterogeneity of bone tissue require a multiscale modeling to understand its mechanical behavior and its remodeling mechanisms. In this paper, a novel multiscale hierarchical approach including microfibril scale based on hybrid neural network (NN) computation and homogenization equations was developed to link nanoscopic and macroscopic scales to estimate the elastic properties of human cortical bone. The multiscale model is divided into three main phases: (i) in step 0, the elastic constants of collagen-water and mineral-water composites are calculated by averaging the upper and lower Hill bounds; (ii) in step 1, the elastic properties of the collagen microfibril are computed using a trained NN simulation. Finite element calculation is performed at nanoscopic levels to provide a database to train an in-house NN program; and (iii) in steps 2-10 from fibril to continuum cortical bone tissue, homogenization equations are used to perform the computation at the higher scales. The NN outputs (elastic properties of the microfibril) are used as inputs for the homogenization computation to determine the properties of mineralized collagen fibril. The mechanical and geometrical properties of bone constituents (mineral, collagen, and cross-links) as well as the porosity were taken in consideration. This paper aims to predict analytically the effective elastic constants of cortical bone by modeling its elastic response at these different scales, ranging from the nanostructural to mesostructural levels. Our findings of the lowest scale's output were well integrated with the other higher levels and serve as inputs for the next higher scale modeling. Good agreement was obtained between our predicted results and literature data. PMID:24123969

  6. Elastic-plastic models for multi-site damage

    NASA Technical Reports Server (NTRS)

    Actis, Ricardo L.; Szabo, Barna A.

    1994-01-01

    This paper presents recent developments in advanced analysis methods for the computation of stress site damage. The method of solution is based on the p-version of the finite element method. Its implementation was designed to permit extraction of linear stress intensity factors using a superconvergent extraction method (known as the contour integral method) and evaluation of the J-integral following an elastic-plastic analysis. Coarse meshes are adequate for obtaining accurate results supported by p-convergence data. The elastic-plastic analysis is based on the deformation theory of plasticity and the von Mises yield criterion. The model problem consists of an aluminum plate with six equally spaced holes and a crack emanating from each hole. The cracks are of different sizes. The panel is subjected to a remote tensile load. Experimental results are available for the panel. The plasticity analysis provided the same limit load as the experimentally determined load. The results of elastic-plastic analysis were compared with the results of linear elastic analysis in an effort to evaluate how plastic zone sizes influence the crack growth rates. The onset of net-section yielding was determined also. The results show that crack growth rate is accelerated by the presence of adjacent damage, and the critical crack size is shorter when the effects of plasticity are taken into consideration. This work also addresses the effects of alternative stress-strain laws: The elastic-ideally-plastic material model is compared against the Ramberg-Osgood model.

  7. Model for the elastic behavior near intermartensitic transitions

    NASA Astrophysics Data System (ADS)

    Dai, Liyang; Cullen, James; Wuttig, Manfred

    2005-05-01

    Transitions between different martensitic states have been observed in Ni0.50Mn0.284Ga0.216 using elastic constant measurements. In this paper, we develop a model to explain the reentrant behavior based on a Landau expansion of the free energy in strain space. Here, we assume that the coefficient of the third-order term as well as the second-order term has significant temperature dependence. This assumption results in a C' versus temperature in good agreement with observation. The model and possible modifications to it are discussed and compared to the elastic constant data.

  8. Modeling and Feed-Forward Control of Structural Elastic Robots

    NASA Astrophysics Data System (ADS)

    Reiner, M.; Otter, M.; Ulbrich, H.

    2010-09-01

    In this paper an approach for modeling and control of robots with elasticities in power trains and in structural parts is presented and experimentally verified. For this purpose object-oriented, nonlinear models are developed in the modeling language Modelica. A system theoretical study of the generated models shows that a direct inversion of the models, due to the unstable zero dynamics, is not possible. Therefore an algorithm for the approximate inversion is developed. With this inversion method an approximate inverse model considering structural elasticity for a 6-axis robot is created and verified for the control of the robot. The new control leads to a considerable improvement of the driving characteristics of the robot in the experiment.

  9. Model analysis of tidal volume response to inspiratory elastic loads.

    PubMed

    Zin, W A; Rossi, A; Zocchi, L; Milic-Emili, J

    1984-07-01

    Based on experimental inspiratory driving pressure waveforms and active respiratory impedance data of anesthetized cats, we made model predictions of the factors that determine the immediate (first loaded breath) intrinsic (i.e., nonneural) tidal volume compensation to added inspiratory elastic loads. The time course of driving pressure (P) was given by P = atb, where a is the pressure at 1 s from onset of inspiration and represents the intensity of neuromuscular drive, t is time, and b is an index of the shape of the driving pressure wave. For a given active respiratory impedance, tidal volume compensation to added elastic loads decreases with increasing inspiratory duration and decreasing value of b but is independent of a. We have also assessed the validity of the "effective elastance" (Lynne-Davies et al., J. Appl. Physiol. 30: 512-516, 1971) as a predictor of tidal volume responses to elastic loads. In absence of vagal feedback, the effective elastance appears to be a reliable predictor, except for short inspiratory duration and a very high intrinsic resistance. PMID:6469787

  10. Modelling fracture orientations in reservoirs with photo-elastic techniques

    SciTech Connect

    Rawnsley, K.; Auzias, V.; Petit, J.P.

    1995-08-01

    Fractures within a reservoir can be divided into two types: faults, which result from shear displacement, and tension fractures which result from opening mode displacement. Tension fractures develop perpendicular to the minimal principal stress and so represent an image of the stress field orientation prevailing during their development. In reservoirs tension fractures are not observed by standard seismic techniques and can only be observed very locally in core or suitable well bore images. Frequently tension fracture orientations vary within and between wells. For this reason the extrapolation of tension fracture orientations between wells can be complicated. We present a method based on photo-elastic techniques that can model complex tension fracture patterns. Photo-elastic techniques permit the modelling of a stress field in a faulted strata and have shown that variations in tension fracture orientation may often be linked to stress field perturbations due to faults. The photo-elastic model consists of a rectangular plate of transparent polymer into which narrow slots with various frictional properties can be engineered to represent faults. The plate is loaded in a compression cell and light is transmitted through the plate via two polarizers and the directions of the stress field trajectories can be determined. Applications of photo-elastic modelling of tension fracture orientations to both outcrop and reservoir data are presented. The reservoir example consists of a horizontal well with continuous fracture data obtained from core and Formation Micro-Scanner logs. It is shown that the stress field at the seismic fault scale can be related to the large scale variations in the fracture pattern in the well. Smaller scale variations in the well fracture orientations are simulated by down scaling the photo-elastic model from seismic scale faults to include mostly sub-seismic faults near the well.

  11. The role of mode of delivery on elastic fiber architecture and vaginal vault elasticity: a rodent model study

    PubMed Central

    Downing, Keith; Billah, Mubashir; Raparia, Eva; Shah, Anup; Silverstein, Moshe; Ahmad, Amanda; Boutis, Gregory S.

    2013-01-01

    We report on an experimental study of the role of mode of delivery and pregnancy on the architecture of vaginal elastic fibers and vaginal vault elasticity in female Sprague-Dawley rats. In primiparous rats submitted to spontaneous or Cesarean delivery and virgin rats submitted to simulated delivery, the tortuosity of elastic fibers (defined as the ratio of length to end-to-end distance) was observed to decrease when measured two days to two weeks postpartum. In addition, the measured tortuosity of elastic fibers in multiparous rats was greater than that of virgin rats. The tortuosity of elastic fibers of all rats measured at two days postpartum were found to be similar to that of multiparous rats. At two weeks postpartum the measured tortuosity of vaginal elastic fibers was indistinguishable from virgin rats, regardless of the delivery method. Borrowing from the field of polymer physics, a model is suggested that connects elastic fiber tortuosity to the resulting tension under an applied stress; fibers having high tortuosity are expected to provide less structural support than more linear, low tortuosity fibers. To probe the macroscopic effects in elasticity due to architectural changes observed in elastic fibers, we have measured the stiffness of the vaginal vault in each cohort using a pressure-infusion system. The vaginal vault stiffness of all primiparous rats measured two weeks postpartum was greater than that measured two days postpartum. In addition, the vaginal vault of virgin rats was stiffer than that of multiparous rats. These observations confirmed that vaginal vault elastic fibers undergo significant remodeling due to pregnancy and parturition, and that the complex remodeling may be a significant contributor to tissue elasticity. Remarkably, regardless of the mode of delivery or simulated tissue trauma, elastic fiber tortuosity is observed to decrease from two days to two weeks postpartum indicating the onset of repair and recovery of tissue stiffness

  12. Modelling Elastic Media With Arbitrary Shapes Using the Wavelet Transform

    NASA Astrophysics Data System (ADS)

    Rosa, J. W.; Cardoso, F. A.; Rosa, J. W.; Aki, K.

    2004-12-01

    We extend the new method proposed by Rosa et al. (2001) for the study of elastic bodies with complete arbitrary shapes. The method was originally developed for modelling 2-D elastic media with the application of the wavelet transform, and was extended to cases where discontinuities simulated geologic faults between two different elastic media. In addition to extending the method for the study of bodies with complete arbitrary shapes, we also test new transforms with the objective of making the related matrices more compact, which are also applied to the most general case of the method. The basic method consists of the discretization of the polynomial expansion for the boundary conditions of the 2-D problem involving the stress and strain relations for the media. This parameterization leads to a system of linear equations that should be solved for the determination of the expansion coefficients, which are the model parameters, and their determination leads to the solution of the problem. Despite the fact that the media we studied originally were 2-D bodies, the result of the application of this new method can be viewed as an approximate solution to some specific 3-D problems. Among the motivations for developing this method are possible geological applications (that is, the study of tectonic plates and geologic faults) and simulations of the elastic behaviour of materials in several other fields of science. The wavelet transform is applied with two main objectives, namely to decrease the error related to the truncation of the polynomial expansion and to make the system of linear equations more compact for computation. Having validated this method for the original 2-D elastic media, we plan that this extension to elastic bodies with complete arbitrary shapes will enable it to be even more attractive for modelling real media. Reference Rosa, J. W. C., F. A. C. M. Cardoso, K. Aki, H. S. Malvar, F. A. V. Artola, and J. W. C. Rosa, Modelling elastic media with the

  13. Deconstruction and elastic ππ scattering in Higgsless models

    NASA Astrophysics Data System (ADS)

    Chivukula, R. Sekhar; Simmons, Elizabeth H.; He, Hong-Jian; Kurachi, Masafumi; Tanabashi, Masaharu

    2007-02-01

    We study elastic pion-pion scattering in global linear moose models and apply the results to a variety of Higgsless models in flat and anti-de Sitter (AdS) space using the equivalence theorem. In order to connect the global moose to Higgsless models, we first introduce a block-spin transformation which corresponds, in the continuum, to the freedom to perform coordinate transformations in the Higgsless model. We show that it is possible to make an “f-flat” deconstruction in which all of the f-constants fj of the linear moose model are identical; the phenomenologically relevant f-flat models are those in which the coupling constants of the groups at either end of the moose are small—corresponding to the global linear moose. In studying pion-pion scattering, we derive various sum rules, including one analogous to the Kawarabayashi-Suzuki-Riazuddin-Fayyazuddin (KSRF) relation, and use them in evaluating the low-energy and high-energy forms of the leading elastic partial-wave scattering amplitudes. We obtain elastic unitarity bounds as a function of the mass of the lightest KK mode and discuss their physical significance.

  14. Deconstruction and elastic {pi}{pi} scattering in Higgsless models

    SciTech Connect

    Chivukula, R. Sekhar; Simmons, Elizabeth H.; He, Hong-Jian; Kurachi, Masafumi; Tanabashi, Masaharu

    2007-02-01

    We study elastic pion-pion scattering in global linear moose models and apply the results to a variety of Higgsless models in flat and anti-de Sitter (AdS) space using the equivalence theorem. In order to connect the global moose to Higgsless models, we first introduce a block-spin transformation which corresponds, in the continuum, to the freedom to perform coordinate transformations in the Higgsless model. We show that it is possible to make an 'f-flat' deconstruction in which all of the f-constants f{sub j} of the linear moose model are identical; the phenomenologically relevant f-flat models are those in which the coupling constants of the groups at either end of the moose are small--corresponding to the global linear moose. In studying pion-pion scattering, we derive various sum rules, including one analogous to the Kawarabayashi-Suzuki-Riazuddin-Fayyazuddin (KSRF) relation, and use them in evaluating the low-energy and high-energy forms of the leading elastic partial-wave scattering amplitudes. We obtain elastic unitarity bounds as a function of the mass of the lightest KK mode and discuss their physical significance.

  15. NEXT-GENERATION NUMERICAL MODELING: INCORPORATING ELASTICITY, ANISOTROPY AND ATTENUATION

    SciTech Connect

    S. LARSEN; ET AL

    2001-03-01

    A new effort has been initiated between the Department of Energy (DOE) and the Society of Exploration Geophysicists (SEG) to investigate what features the next generation of numerical seismic models should contain that will best address current technical problems encountered during exploration in increasingly complex geologies. This collaborative work is focused on designing and building these new models, generating synthetic seismic data through simulated surveys of various geometries, and using these data to test and validate new and improved seismic imaging algorithms. The new models will be both 2- and 3-dimensional and will include complex velocity structures as well as anisotropy and attenuation. Considerable attention is being focused on multi-component acoustic and elastic effects because it is now widely recognized that converted phases could play a vital role in improving the quality of seismic images. An existing, validated 3-D elastic modeling code is being used to generate the synthetic data. Preliminary elastic modeling results using this code are presented here along with a description of the proposed new models that will be built and tested.

  16. Modeling universal dynamics of cell spreading on elastic substrates.

    PubMed

    Fan, Houfu; Li, Shaofan

    2015-11-01

    A three-dimensional (3D) multiscale moving contact line model is combined with a soft matter cell model to study the universal dynamics of cell spreading over elastic substrates. We have studied both the early stage and the late stage cell spreading by taking into account the actin tension effect. In this work, the cell is modeled as an active nematic droplet, and the substrate is modeled as a St. Venant Kirchhoff elastic medium. A complete 3D simulation of cell spreading has been carried out. The simulation results show that the spreading area versus spreading time at different stages obeys specific power laws, which is in good agreement with experimental data and theoretical prediction reported in the literature. Moreover, the simulation results show that the substrate elasticity may affect force dipole distribution inside the cell. The advantage of this approach is that it combines the hydrodynamics of actin retrograde flow with moving contact line model so that it can naturally include actin tension effect resulting from actin polymerization and actomyosin contraction, and thus it might be capable of simulating complex cellular scale phenomenon, such as cell spreading or even crawling. PMID:25850888

  17. Mechanistic Constitutive Models for Rubber Elasticity and Viscoelasticity

    SciTech Connect

    Puso, M

    2003-01-21

    Physically based models which describe the finite strain behavior of vulcanized rubber are developed. Constitutive laws for elasticity and viscoelasticity are derived by integrating over orientation space the forces due to each individual polymer chain. A novel scheme is presented which effectively approximates these integrals in terms of strain and strain invariants. In addition, the details involving the implementation of such models into a quasi-static large strain finite element formulation are provided. In order to account for the finite extensibility of a molecular chain, Langevin statistics is used to model the chain response. The classical statistical model of rubber assumes that polymer chains interact only at the chemical crosslinks. It is shown that such model when fitted for uniaxial tension data cannot fit compression or equibiaxial data. A model which incorporates the entanglement interactions of surrounding chains, in addition to the finite extensibility of the chains, is shown to give better predictions than the classical model. The technique used for approximating the orientation space integral was applied to both the classical and entanglement models. A viscoelasticity model based on the force equilibration process as described by Doi and Edwards is developed. An assumed form for the transient force in the chain is postulated. The resulting stress tensor is composed of an elastic and a viscoelastic portion with the elastic stress given by the proposed entanglement model. In order to improve the simulation of experimental data, it was found necessary to include the effect of unattached or dangling polymer chains in the viscoelasticity model. The viscoelastic effect of such chains is the manifestation of a disengagement process. This disengagement model for unattached polymer chains motivated an empirical model which was very successful in simulating the experimental results considered.

  18. Efficient routing and spectrum assignment in elastic optical networks with time scheduled traffic

    NASA Astrophysics Data System (ADS)

    Qiu, Yang; Fan, Zheyu; Chan, Chun-Kit

    2016-07-01

    Elastic optical networks (EONs) employ dynamic routing and spectrum assignment (RSA) algorithms to support diverse services and heterogeneous requests. However, these RSA algorithms may possibly induce spectrum fragments when allocating spectrum to accommodate different service requests. Therefore, such induced spectrum fragments should also be regarded as spectrum consumption besides the allocated spectrum by RSA algorithms. In this paper, by additionally considering the holding times of lightpaths and service connections, we first introduce a comprehensive spectrum consumption model to simultaneously investigate both the allocated and the fragmented spectrum consumptions. Then we solve this model in both static and dynamic traffic scenarios, by either formulating the RSA problem with time-scheduled traffic or introducing a time-aware spectrum-efficient heuristics algorithm. Since no defragmentation is executed in spectrum allocation, the proposed RSA algorithm requires no traffic disruption and can be realized more easily in reality. Simulation results show that the proposed algorithm reduces the comprehensive spectrum consumption and has lower bandwidth blocking probability than the typical first-fit RSA algorithm.

  19. Performance evaluation of time-aware enhanced software defined networking (TeSDN) for elastic data center optical interconnection.

    PubMed

    Yang, Hui; Zhang, Jie; Zhao, Yongli; Ji, Yuefeng; Li, Hui; Lin, Yi; Li, Gang; Han, Jianrui; Lee, Young; Ma, Teng

    2014-07-28

    Data center interconnection with elastic optical networks is a promising scenario to meet the high burstiness and high-bandwidth requirements of data center services. We previously implemented enhanced software defined networking over elastic optical network for data center application [Opt. Express 21, 26990 (2013)]. On the basis of it, this study extends to consider the time-aware data center service scheduling with elastic service time and service bandwidth according to the various time sensitivity requirements. A novel time-aware enhanced software defined networking (TeSDN) architecture for elastic data center optical interconnection has been proposed in this paper, by introducing a time-aware resources scheduling (TaRS) scheme. The TeSDN can accommodate the data center services with required QoS considering the time dimensionality, and enhance cross stratum optimization of application and elastic optical network stratums resources based on spectrum elasticity, application elasticity and time elasticity. The overall feasibility and efficiency of the proposed architecture is experimentally verified on our OpenFlow-based testbed. The performance of TaRS scheme under heavy traffic load scenario is also quantitatively evaluated based on TeSDN architecture in terms of blocking probability and resource occupation rate. PMID:25089383

  20. Self-consistent Modeling of Elastic Anisotropy in Shale

    NASA Astrophysics Data System (ADS)

    Kanitpanyacharoen, W.; Wenk, H.; Matthies, S.; Vasin, R.

    2012-12-01

    Elastic anisotropy in clay-rich sedimentary rocks has increasingly received attention because of significance for prospecting of petroleum deposits, as well as seals in the context of nuclear waste and CO2 sequestration. The orientation of component minerals and pores/fractures is a critical factor that influences elastic anisotropy. In this study, we investigate lattice and shape preferred orientation (LPO and SPO) of three shales from the North Sea in UK, the Qusaiba Formation in Saudi Arabia, and the Officer Basin in Australia (referred to as N1, Qu3, and L1905, respectively) to calculate elastic properties and compare them with experimental results. Synchrotron hard X-ray diffraction and microtomography experiments were performed to quantify LPO, weight proportions, and three-dimensional SPO of constituent minerals and pores. Our preliminary results show that the degree of LPO and total amount of clays are highest in Qu3 (3.3-6.5 m.r.d and 74vol%), moderately high in N1 (2.4-5.6 m.r.d. and 70vol%), and lowest in L1905 (2.3-2.5 m.r.d. and 42vol%). In addition, porosity in Qu3 is as low as 2% while it is up to 6% in L1605 and 8% in N1, respectively. Based on this information and single crystal elastic properties of mineral components, we apply a self-consistent averaging method to calculate macroscopic elastic properties and corresponding seismic velocities for different shales. The elastic model is then compared with measured acoustic velocities on the same samples. The P-wave velocities measured from Qu3 (4.1-5.3 km/s, 26.3%Ani.) are faster than those obtained from L1905 (3.9-4.7 km/s, 18.6%Ani.) and N1 (3.6-4.3 km/s, 17.7%Ani.). By making adjustments for pore structure (aspect ratio) and single crystal elastic properties of clay minerals, a good agreement between our calculation and the ultrasonic measurement is obtained.

  1. Modeling and Processing of Continuous 3D Elastic Wavefield Data

    NASA Astrophysics Data System (ADS)

    Milkereit, B.; Bohlen, T.

    2001-12-01

    Continuous seismic wavefields are excited by earthquake clustering, induced seismicity in reservoirs, and mining. In hydrocarbon reservoirs, for example, pore pressure changes and fluid flow (mass transfer) will cause incremental deviatoric stresses sufficient to trigger and sustain seismic activity. Here we address three aspects of seismic wavefields in three-dimensional heterogeneous media triggered by distributed sources in space and time: forward modeling, multichannel data processing, and source location imaging. A power law distribution of seismic sources (such as the Gutenberg-Richter law) is used for the modeling of viscoelastic/elastic wave propagation through a realistic earth model. 3D modeling provides new insight in the interaction of multi-source wavefields and the role of scale-dependend elastic model parameters on transmitted and reflected/back-scattered wavefields. There exists a strong correlation between the spatial properties of the compressional, shear wave and density perturbations and the lateral correlation length of the resulting reflected or transmitted seismic wavefields. Modeling is based on the implementation of 3D elastic/viscoelastic FD codes on massive parallel and/or distributed computing resources using MPI (message passing interface). For parallelization, large grid 3D earth models are decomposed into subvolume processing elements whereby each processing element is updating the wavefield within its portion of the grid. Processing of continuous seismic wavefields excited by multiple distributed sources is based on a combination of crosscorrelated or slowness-transformed array data and Kirchhoff or reverse time migration for source location or source volume imaging. The appearance of slowness in both migration and array data processing suggests the possibility of combining them into a single process. In order to place further constraints on the migration, the directivity properties of 3-component receiver arrays can be included in

  2. Supersymmetric sigma model of disordered, isotropic, elastic media

    NASA Astrophysics Data System (ADS)

    Photiadis, Douglas

    The supersymmetry method proposed by Efetov in 1983 has been enormously successful at describing a broad range of phenomena involving disorder, providing a framework for understanding and going beyond the successes of random matrix theory and allowing a calculation of the slowing of diffusion as the Anderson transition is approached. The original model described the propagation of a scalar wave in a disordered medium, and subsequent work extended these ideas to classical waves, optical or elastic, with the approximation that the wave propagation can be similarly described by a scalar theory. Such a theory cannot however account correctly for scattering between different polarizations. A direct attempt to derive a supersymmetric model describing elastic waves results in a non-renormalizable field theory, and poses substantial difficulties. We have obtained a supersymmetric sigma model by considering the dual model which describes a generalized superstress field. The model enables one to fully account for the different wave types and polarizations in the medium. We will present our recent results in this area, including model predictions for the obtained diffusion constants, and the effects of renormalization to first order. This research was funded by the Office of Naval Research.

  3. Hybrid Simulation Modeling to Estimate U.S. Energy Elasticities

    NASA Astrophysics Data System (ADS)

    Baylin-Stern, Adam C.

    This paper demonstrates how an U.S. application of CIMS, a technologically explicit and behaviourally realistic energy-economy simulation model which includes macro-economic feedbacks, can be used to derive estimates of elasticity of substitution (ESUB) and autonomous energy efficiency index (AEEI) parameters. The ability of economies to reduce greenhouse gas emissions depends on the potential for households and industry to decrease overall energy usage, and move from higher to lower emissions fuels. Energy economists commonly refer to ESUB estimates to understand the degree of responsiveness of various sectors of an economy, and use estimates to inform computable general equilibrium models used to study climate policies. Using CIMS, I have generated a set of future, 'pseudo-data' based on a series of simulations in which I vary energy and capital input prices over a wide range. I then used this data set to estimate the parameters for transcendental logarithmic production functions using regression techniques. From the production function parameter estimates, I calculated an array of elasticity of substitution values between input pairs. Additionally, this paper demonstrates how CIMS can be used to calculate price-independent changes in energy-efficiency in the form of the AEEI, by comparing energy consumption between technologically frozen and 'business as usual' simulations. The paper concludes with some ideas for model and methodological improvement, and how these might figure into future work in the estimation of ESUBs from CIMS. Keywords: Elasticity of substitution; hybrid energy-economy model; translog; autonomous energy efficiency index; rebound effect; fuel switching.

  4. Multiscale, structure-based modeling for the elastic mechanical behavior of arterial walls.

    PubMed

    Stylianopoulos, Triantafyllos; Barocas, Victor H

    2007-08-01

    Passive elastic behavior of arterial wall remains difficult to model. Although phenomenological and structural models exist, the question of how the three-dimensional network structure of the collagen in the artery determines its mechanical properties is still open. A model is presented that incorporates a collagen network as well as the noncollagenous material that comprise the artery. The collagen architecture is represented as a network of interconnected fibers, and a neo-Hookean constitutive equation is used to describe the contribution of the noncollagenous matrix. The model is multiscale in that volume-averaging theory is applied to the collagen network, and it is structural in that parameters of the microstructure of the collagen network were considered instead of a macroscopic constitutive law. The computational results provided a good fit to published experimental data for decellularized porcine carotid arteries. The model predicted increased circumferential compliance for increased axial stretch, consistent with previously published reports, and a relatively small sensitivity to open angle. Even at large extensions, the model predicted that the noncollagenous matrix would be in compression, preventing collapse of the collagen network. The incorporation of fiber-fiber interactions led to an accurate model of artery wall behavior with relatively few parameters. The counterintuitive result that the noncollagenous component is in compression during extension and inflation of the tissue suggests that the collagen is important even at small strains, with the noncollagenous components supporting the network, but not resisting the load directly. More accurate representation of the microstructure of the artery wall is needed to explore this issue further. PMID:17655483

  5. Elastic Model Transitions Using Quadratic Inequality Constrained Least Squares

    NASA Technical Reports Server (NTRS)

    Orr, Jeb S.

    2012-01-01

    A technique is presented for initializing multiple discrete finite element model (FEM) mode sets for certain types of flight dynamics formulations that rely on superposition of orthogonal modes for modeling the elastic response. Such approaches are commonly used for modeling launch vehicle dynamics, and challenges arise due to the rapidly time-varying nature of the rigid-body and elastic characteristics. By way of an energy argument, a quadratic inequality constrained least squares (LSQI) algorithm is employed to e ect a smooth transition from one set of FEM eigenvectors to another with no requirement that the models be of similar dimension or that the eigenvectors be correlated in any particular way. The physically unrealistic and controversial method of eigenvector interpolation is completely avoided, and the discrete solution approximates that of the continuously varying system. The real-time computational burden is shown to be negligible due to convenient features of the solution method. Simulation results are presented, and applications to staging and other discontinuous mass changes are discussed

  6. Elastic laboratory measurements and modeling of saturated basalts

    NASA Astrophysics Data System (ADS)

    Adam, Ludmila; Otheim, Thomas

    2013-03-01

    Understanding the elastic behavior of basalt is important to seismically monitor volcanoes, subsea basalts, and carbon sequestration in basalt. We estimate the elastic properties of basalt samples from the Snake River Plain, Idaho, at ultrasonic (0.8 MHz) and seismic (2-300 Hz) frequencies. To test the sensitivity of seismic waves to the fluid content in the pore structure, measurements are performed at three saturation conditions: saturated with liquid CO2, water, and dry. When CO2 replaces water, the P-wave velocity drops, on average, by 10%. Vesicles and cracks, observed in the rock microstructure, control the relaxation of pore-fluid pressures in the rock as a wave propagates. The bulk and shear moduli of basalts saturated with liquid CO2 are not frequency dependent, suggesting that fluid pore pressures are in equilibrium between 2 Hz and 0.8 MHz. However, when samples are water saturated, the bulk modulus of the rock is frequency dependent. Modeling with Gassmann's equations predicts the measured saturated rock bulk modulus for all fluids for frequencies below 20 Hz but underpredicts the water-saturated basalt bulk modulus for frequencies greater than 20 Hz. The most likely reason is that the pore-fluid pressures are unrelaxed. Instead, the ultrasonic frequency rock moduli are modeled with high-frequency elastic theories of squirt flow and Kuster-Toksöz (KT). Although KT's model is based on idealized pore shapes, a combination of spheres (vesicles) and penny-shaped cracks (fractures) interpreted and quantified from petrographical data predicts the ultrasonic dry and saturated rock moduli for the measured basalts.

  7. Dynamics of Elastic Beams with Embedded Fluid-Filled Parallel-Channel Networks

    PubMed Central

    Gat, Amir D.

    2015-01-01

    Abstract A pressurized fluid-filled parallel-channel network embedded in an elastic beam, asymmetrically to the neutral plane, will create a deformation field within the beam. Deformation due to embedded fluidic networks is currently studied in the context of soft actuators and soft-robotic applications. Expanding on this concept, configurations can be designed so that the pressure in the channel network is created directly from external forces acting on the beam, and thus can be viewed as passive solid–fluid composite structures. We approximate the deformation of such structures and relate the fluid pressure and geometry of the network to a continuous deformation-field function. This enables the design of networks creating steady arbitrary deformation fields as well as to eliminate deformation created by external time-varying forces, thus increasing the effective rigidity of the beam. In addition, by including the effects of the deformation created by the channel network on the beam inertia, we can modify the response of the beam to external time-varying forces. We present a scheme to design channel networks that create predefined oscillating deformation patterns in response to external oscillating forces. The ability to include inertial effects is relevant to the design of dynamic soft robots and soft actuators. Our results are illustrated and validated by numerical computations.

  8. Elastic tracking versus neural network tracking for very high multiplicity problems

    SciTech Connect

    Harlander, M.; Gyulassy, M.

    1991-04-01

    A new Elastic Tracking (ET) algorithm is proposed for finding tracks in very high multiplicity and noisy environments. It is based on a dynamical reinterpretation and generalization of the Radon transform and is related to elastic net algorithms for geometrical optimization. ET performs an adaptive nonlinear fit to noisy data with a variable number of tracks. Its numerics is more efficient than that of the traditional Radon or Hough transform method because it avoids binning of phase space and the costly search for valid minima. Spurious local minima are avoided in ET by introducing a time-dependent effective potential. The method is shown to be very robust to noise and measurement error and extends tracking capabilities to much higher track densities than possible via local road finding or even the novel Denby-Peterson neural network tracking algorithms. 12 refs., 2 figs.

  9. Distinct Tensile Response of Model Semi-flexible Elastomer Networks

    NASA Astrophysics Data System (ADS)

    Aguilera-Mercado, Bernardo M.; Cohen, Claude; Escobedo, Fernando A.

    2011-03-01

    Through coarse-grained molecular modeling, we study how the elastic response strongly depends upon nanostructural heterogeneities in model networks made of semi-flexible chains exhibiting both regular and realistic connectivity. Idealized regular polymer networks have been shown to display a peculiar elastic response similar to that of super-tough natural materials (e.g., organic adhesives inside abalone shells). We investigate the impact of chain stiffness, and the effect of including tri-block copolymer chains, on the network's topology and elastic response. We find in some systems a dual tensile response: a liquid-like behavior at small deformations, and a distinct saw-tooth shaped stress-strain curve at moderate to large deformations. Additionally, stiffer regular networks exhibit a marked hysteresis over loading-unloading cycles that can be deleted by heating-cooling cycles or by performing deformations along different axes. Furthermore, small variations of chain stiffness may entirely change the nature of the network's tensile response from an entropic to an enthalpic elastic regime, and micro-phase separation of different blocks within elastomer networks may significantly enhance their mechanical strength. This work was supported by the American Chemical Society.

  10. Model neural networks

    SciTech Connect

    Kepler, T.B.

    1989-01-01

    After a brief introduction to the techniques and philosophy of neural network modeling by spin glass inspired system, the author investigates several properties of these discrete models for autoassociative memory. Memories are represented as patterns of neural activity; their traces are stored in a distributed manner in the matrix of synaptic coupling strengths. Recall is dynamic, an initial state containing partial information about one of the memories evolves toward that memory. Activity in each neuron creates fields at every other neuron, the sum total of which determines its activity. By averaging over the space of interaction matrices with memory constraints enforced by the choice of measure, we show that the exist universality classes defined by families of field distributions and the associated network capacities. He demonstrates the dominant role played by the field distribution in determining the size of the domains of attraction and present, in two independent ways, an expression for this size. He presents a class of convergent learning algorithms which improve upon known algorithms for producing such interaction matrices. He demonstrates that spurious states, or unexperienced memories, may be practically suppressed by the inducement of n-cycles and chaos. He investigates aspects of chaos in these systems, and then leave discrete modeling to implement the analysis of chaotic behavior on a continuous valued network realized in electronic hardware. In each section he combine analytical calculation and computer simulations.

  11. Elastic response of DNA molecules under the action of interfacial traction and stretching: An elastic thin rod model

    NASA Astrophysics Data System (ADS)

    Xiao, Ye; Huang, Zaixing; Qiang, Lei; Gao, Jun

    2015-11-01

    In a multivalent salt solution, a segment of DNA is modeled as an elastic rod subjected to the interfacial traction. The shooting method is used to calculate the equilibrium configurations of condensed DNA under the action of the longitudinal end-force and interfacial traction simultaneously. The results show that the shapes of DNA are mainly determined by the competition between the interfacial energy and elastic strain energy of stretching. The change of end-to-end distance with the longitudinal end-force is consistent with the worm-like chain (WLC) model. The higher the concentration is, the stronger the condensation of DNA.

  12. The molecular kink paradigm for rubber elasticity: Numerical simulations of explicit polyisoprene networks at low to moderate tensile strains

    NASA Astrophysics Data System (ADS)

    Hanson, David E.

    2011-08-01

    Based on recent molecular dynamics and ab initio simulations of small isoprene molecules, we propose a new ansatz for rubber elasticity. We envision a network chain as a series of independent molecular kinks, each comprised of a small number of backbone units, and the strain as being imposed along the contour of the chain. We treat chain extension in three distinct force regimes: (Ia) near zero strain, where we assume that the chain is extended within a well defined tube, with all of the kinks participating simultaneously as entropic elastic springs, (II) when the chain becomes sensibly straight, giving rise to a purely enthalpic stretching force (until bond rupture occurs) and, (Ib) a linear entropic regime, between regimes Ia and II, in which a force limit is imposed by tube deformation. In this intermediate regime, the molecular kinks are assumed to be gradually straightened until the chain becomes a series of straight segments between entanglements. We assume that there exists a tube deformation tension limit that is inversely proportional to the chain path tortuosity. Here we report the results of numerical simulations of explicit three-dimensional, periodic, polyisoprene networks, using these extension-only force models. At low strain, crosslink nodes are moved affinely, up to an arbitrary node force limit. Above this limit, non-affine motion of the nodes is allowed to relax unbalanced chain forces. Our simulation results are in good agreement with tensile stress vs. strain experiments.

  13. Modelling apical constriction in epithelia using elastic shell theory.

    PubMed

    Jones, Gareth Wyn; Chapman, S Jonathan

    2010-06-01

    Apical constriction is one of the fundamental mechanisms by which embryonic tissue is deformed, giving rise to the shape and form of the fully-developed organism. The mechanism involves a contraction of fibres embedded in the apical side of epithelial tissues, leading to an invagination or folding of the cell sheet. In this article the phenomenon is modelled mechanically by describing the epithelial sheet as an elastic shell, which contains a surface representing the continuous mesh formed from the embedded fibres. Allowing this mesh to contract, an enhanced shell theory is developed in which the stiffness and bending tensors of the shell are modified to include the fibres' stiffness, and in which the active effects of the contraction appear as body forces in the shell equilibrium equations. Numerical examples are presented at the end, including the bending of a plate and a cylindrical shell (modelling neurulation) and the invagination of a spherical shell (modelling simple gastrulation). PMID:19859751

  14. The kinesin walk: a dynamic model with elastically coupled heads.

    PubMed Central

    Derényi, I; Vicsek, T

    1996-01-01

    Recently individual two-headed kinesin molecules have been studied in in vitro motility assays revealing a number of their peculiar transport properties. In this paper we propose a simple and robust model for the kinesin stepping process with elastically coupled Brownian heads that show all of these properties. The analytic and numerical treatment of our model results in a very good fit to the experimental data and practically has no free parameters. Changing the values of the parameters in the restricted range allowed by the related experimental estimates has almost no effect on the shape of the curves and results mainly in a variation of the zero load velocity that can be directly fitted to the measured data. In addition, the model is consistent with the measured pathway of the kinesin ATPase. PMID:8692894

  15. Elastic-wave velocity in marine sediments with gas hydrates: Effective medium modeling

    USGS Publications Warehouse

    Helgerud, M.B.; Dvorkin, J.; Nur, A.; Sakai, A.; Collett, T.

    1999-01-01

    We offer a first-principle-based effective medium model for elastic-wave velocity in unconsolidated, high porosity, ocean bottom sediments containing gas hydrate. The dry sediment frame elastic constants depend on porosity, elastic moduli of the solid phase, and effective pressure. Elastic moduli of saturated sediment are calculated from those of the dry frame using Gassmann's equation. To model the effect of gas hydrate on sediment elastic moduli we use two separate assumptions: (a) hydrate modifies the pore fluid elastic properties without affecting the frame; (b) hydrate becomes a component of the solid phase, modifying the elasticity of the frame. The goal of the modeling is to predict the amount of hydrate in sediments from sonic or seismic velocity data. We apply the model to sonic and VSP data from ODP Hole 995 and obtain hydrate concentration estimates from assumption (b) consistent with estimates obtained from resistivity, chlorinity and evolved gas data. Copyright 1999 by the American Geophysical Union.

  16. Constitutive modelling of composite biopolymer networks.

    PubMed

    Fallqvist, B; Kroon, M

    2016-04-21

    The mechanical behaviour of biopolymer networks is to a large extent determined at a microstructural level where the characteristics of individual filaments and the interactions between them determine the response at a macroscopic level. Phenomena such as viscoelasticity and strain-hardening followed by strain-softening are observed experimentally in these networks, often due to microstructural changes (such as filament sliding, rupture and cross-link debonding). Further, composite structures can also be formed with vastly different mechanical properties as compared to the individual networks. In this present paper, we present a constitutive model presented in a continuum framework aimed at capturing these effects. Special care is taken to formulate thermodynamically consistent evolution laws for dissipative effects. This model, incorporating possible anisotropic network properties, is based on a strain energy function, split into an isochoric and a volumetric part. Generalisation to three dimensions is performed by numerical integration over the unit sphere. Model predictions indicate that the constitutive model is well able to predict the elastic and viscoelastic response of biological networks, and to an extent also composite structures. PMID:26851172

  17. Modelling of poro-visco-elastic biological systems

    NASA Astrophysics Data System (ADS)

    Bilotsky, Y.; Gasik, M.

    2015-09-01

    The research of mechanical properties of poro-visco-elastic biomaterials is an important task, especially for tailoring the best conditions for in-growth and healing of implants. In this work we analysed the behaviour of biomaterials under different static and dynamic loading regimes, in "dry" and "wet" conditions. Retrieved data revealed nonlinear relations between applied force and resulting deformation, with time and frequency dependence. These features were described by a nonlinear model, which reasonably fits mentioned peculiarities. The simplified model was validated with numerical simulations using COMSOL software. Upon validation it allows incorporation of the experimental data obtained by biomechanical spectroscopy towards prediction of biomaterials behaviour in "in vitro" conditions, with the purpose to extrapolate to clinically-relevant environment.

  18. Folding model calculations for 6He+12C elastic scattering

    NASA Astrophysics Data System (ADS)

    Awad, A. Ibraheem

    2016-03-01

    In the framework of the double folding model, we used the α+2n and di-triton configurations for the nuclear matter density of the 6He nucleus to generate the real part of the optical potential for the system 6He+12C. As an alternative, we also use the high energy approximation to generate the optical potential for the same system. The derived potentials are employed to analyze the elastic scattering differential cross section at energies of 38.3, 41.6 and 82.3 MeV/u. For the imaginary part of the potential we adopt the squared Woods-Saxon form. The obtained results are compared with the corresponding measured data as well as with available results in the literature. The calculated total reaction cross sections are investigated and compared with the optical limit Glauber model description.

  19. Relating Cohesive Zone Model to Linear Elastic Fracture Mechanics

    NASA Technical Reports Server (NTRS)

    Wang, John T.

    2010-01-01

    The conditions required for a cohesive zone model (CZM) to predict a failure load of a cracked structure similar to that obtained by a linear elastic fracture mechanics (LEFM) analysis are investigated in this paper. This study clarifies why many different phenomenological cohesive laws can produce similar fracture predictions. Analytical results for five cohesive zone models are obtained, using five different cohesive laws that have the same cohesive work rate (CWR-area under the traction-separation curve) but different maximum tractions. The effect of the maximum traction on the predicted cohesive zone length and the remote applied load at fracture is presented. Similar to the small scale yielding condition for an LEFM analysis to be valid. the cohesive zone length also needs to be much smaller than the crack length. This is a necessary condition for a CZM to obtain a fracture prediction equivalent to an LEFM result.

  20. Elasticity-based targeted growth models of morphogenesis.

    PubMed

    Alford, Patrick W

    2015-01-01

    Embryonic tissue mechanics play an important role in regulating morphogenesis during organ formation, both in a bottom-up sense, where changes in gene expression drive mechanical shape changes, and in a top-down sense, where perturbations in tissue mechanics feed back to drive changes in gene expression. In growing tissues that can generate internal forces and have complex geometries, like those in the embryo, it can often be difficult to empirically determine the mechanical state of the tissue, let alone the relationships between gene expression and mechanical behavior. Mathematical models can be used to fill this gap. Here, we discuss elasticity-based models for growing tissues with a specific focus on targeted growth in embryonic tissues. PMID:25245704

  1. A study of self-propelled elastic cylindrical micro-swimmers using modeling and computation

    NASA Astrophysics Data System (ADS)

    Shi, Lingling; Čanić, Sunčica; Quaini, Annalisa; Pan, Tsorng-Whay

    2016-06-01

    We study propulsion of micro-swimmers in 3D creeping flow. The swimmers are assumed to be made of elastic cylindrical hollow tubes. The swimming is generated by the contractions of the tube's elastic membrane walls producing a traveling wave in the form of a "step-function" traversing the swimmer from right to left, propelling the swimmer from left to right. The problem is motivated by medical applications such as drug delivery. The influence of several non-dimensional design parameters on the velocity of the swimmer is investigated, including the swimmer aspect ratio, and the amplitude of the traveling wave relative to the swimmer radius. An immersed boundary method based on a finite element method approach is successfully combined with an elastic spring network model to simulate the two-way fluid-structure interaction coupling between the elastic cylindrical tube and the flow of a 3D viscous, incompressible fluid. To gain a deeper insight into the influence of various parameters on the swimmer speed, a reduced 1D fluid-structure interaction model was derived and validated. It was found that fast swimmers are those with large tube aspect ratios, and with the amplitude of the traveling wave which is roughly 50% of the reference swimmer radius. It was shown that the speed of our "optimal swimmer" is around 1.5 swimmer lengths per second, which is at the top of the class of all currently manufactured micro-swimmers swimming in low Reynolds number flows (Re =10-6), reported in [11].

  2. Modeling growth paths of interacting crack pairs in elastic media.

    PubMed

    Ghelichi, Ramin; Kamrin, Ken

    2015-10-28

    The problem of predicting the growth of a system of cracks, each crack influencing the growth of the others, arises in multiple fields. We develop an analytical framework toward this aim, which we apply to the 'En-Passant' family of crack growth problems, in which a pair of initially parallel, offset cracks propagate nontrivially toward each other under far-field opening stress. We utilize boundary integral and perturbation methods of linear elasticity, linear elastic fracture mechanics, and common crack opening criteria to calculate the first analytical model for curved En-Passant crack paths. The integral system is reduced under a hierarchy of approximations, producing three methods of increasing simplicity for computing crack paths. The last such method is a major highlight of this work, using an asymptotic matching argument to predict crack paths based on superposition of simple, single-crack fields. Within the corresponding limits of the three methods, all three are shown to agree with each other. We provide comparisons to exact results and existing experimental data to verify certain approximation steps. PMID:26330342

  3. Network model with structured nodes

    NASA Astrophysics Data System (ADS)

    Frisco, Pierluigi

    2011-08-01

    We present a network model in which words over a specific alphabet, called structures, are associated to each node and undirected edges are added depending on some distance measure between different structures. This model shifts the underlying principle of network generation from a purely mathematical one to an information-based one. It is shown how this model differs from the Barábasi-Albert and duplication models and how it can generate networks with topological features similar to biological networks: power law degree distribution, low average path length, clustering coefficient independent from the network size, etc. Two biological networks: S. cerevisiae gene network and E. coli protein-protein interaction network, are replicated using this model.

  4. Probing the cross-effect of strains in non-linear elasticity of nearly regular polymer networks by pure shear deformation.

    PubMed

    Katashima, Takuya; Urayama, Kenji; Chung, Ung-il; Sakai, Takamasa

    2015-05-01

    The pure shear deformation of the Tetra-polyethylene glycol gels reveals the presence of an explicit cross-effect of strains in the strain energy density function even for the polymer networks with nearly regular structure including no appreciable amount of structural defect such as trapped entanglement. This result is in contrast to the expectation of the classical Gaussian network model (Neo Hookean model), i.e., the vanishing of the cross effect in regular networks with no trapped entanglement. The results show that (1) the cross effect of strains is not dependent on the network-strand length; (2) the cross effect is not affected by the presence of non-network strands; (3) the cross effect is proportional to the network polymer concentration including both elastically effective and ineffective strands; (4) no cross effect is expected exclusively in zero limit of network concentration in real polymer networks. These features indicate that the real polymer networks with regular network structures have an explicit cross-effect of strains, which originates from some interaction between network strands (other than entanglement effect) such as nematic interaction, topological interaction, and excluded volume interaction. PMID:25956121

  5. Survivable VON mapping with ambiguity similitude for differentiable maximum shared capacity in elastic optical networks

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Zhu, Xiaoxu; Bai, Wei; Zhao, Yongli; Zhang, Jie; Liu, Zhu; Zhou, Ziguan; Ou, Qinghai

    2016-09-01

    Virtualization is considered to be a promising solution to support various emerging applications. This paper illustrates the problem of virtual mapping from a new perspective, and mainly focuses on survivable mapping of virtual networks and the potential trade-off between spectral resource usage effectiveness and failure resilience level. We design an optimum shared protection mapping (OSPM) scheme in elastic optical networks. A differentiable maximum shared capacity of each frequency slot is defined to more efficiently shared protection resource. In order to satisfy various assessment standards, a metric called ambiguity similitude is defined for the first time to give insight on the optimizing difficulty. Simulation results are presented to compare the outcome of the novel OSPM algorithm with traditional dedicated link protection and maximum shared protection mapping. By synthetic analysis, OSPM outperforms the other two schemes in terms of striking a perfect balance among blocking probability, resources utilization, protective success rate, and spectrum redundancy.

  6. A Morpho-Elastic Model of Hyphal Tip Growth in Filamentous Organisms

    NASA Astrophysics Data System (ADS)

    Goriely, A.; Tabor, M.; Tongen, A.

    The growth of filamentous cells is modeled through the use of exact, nonlinear, elasticity theory for shells and membranes. The biomechanical model is able to capture the generic features of growth of a broad array of cells including actinomycetes, fungi, and root hairs. It also provides the means of studying the effects of external surface stresses. The growth mechanism is modeled by a process of incremental elastic growth in which the cell wall responds elastically to the continuous addition of new material.

  7. Elasticity of fractal materials using the continuum model with non-integer dimensional space

    NASA Astrophysics Data System (ADS)

    Tarasov, Vasily E.

    2015-01-01

    Using a generalization of vector calculus for space with non-integer dimension, we consider elastic properties of fractal materials. Fractal materials are described by continuum models with non-integer dimensional space. A generalization of elasticity equations for non-integer dimensional space, and its solutions for the equilibrium case of fractal materials are suggested. Elasticity problems for fractal hollow ball and cylindrical fractal elastic pipe with inside and outside pressures, for rotating cylindrical fractal pipe, for gradient elasticity and thermoelasticity of fractal materials are solved.

  8. Computational Model of Three Dimensional Elastic Wing Driven by Muscles

    NASA Astrophysics Data System (ADS)

    Wang, Z. Jane; Cowen, Nathaniel; Peskin, Charles S.; Childress, Stephen W.

    2003-11-01

    The flapping wing motion observed in nature results from couplings of muscles, flexible wing structures, and unsteady flows. Previously we have studied the unsteady flows and forces of a rigid two dimensional wing undergoing prescribed motion similar to kinematics observed in insects, as a means of understanding basic unsteady aerodynamic mechanisms. In this talk, we describe our recent progress in constructing a more realistic model insect, which consists of a pair of elastic wings immersed in fluids, and is driven by periodically contracting 'muscles'. A natural computational framework for such a system is the immersed boundary method, which is used here. We present simulations of flapping flight at Reynolds number 10^2, in the same range as that of fruitflies and butterflies.

  9. Modeling of thermal stresses in elastic multilayer coating systems

    NASA Astrophysics Data System (ADS)

    Gao, Chunxue; Zhao, Zhiwei; Li, Xuehua

    2015-02-01

    The performance and reliability of multilayer coating systems are strongly influenced by thermal stresses. The present study develops an alternative analytical model to predict the thermal stresses in elastic multilayer coating systems. An exact closed-form solution is obtained which is independent of the number of coating layers. In addition, with the definition of the coordinate system, the closed-form solution is concisely formulated. Specific results are calculated for thermal stresses in HfO2/SiO2 multilayer optical coatings, and a finite element analysis is performed to confirm the analytical results. The two results agree fairly well with each other. Also, when the thicknesses of the coating layers are much less than the substrate thickness, the approximate solution is obtained based on the exact closed-form solution, and its accuracy is examined.

  10. Shape Selection in the non-Euclidean Model of Elasticity

    NASA Astrophysics Data System (ADS)

    Gemmer, John

    In this dissertation we investigate the behavior of radially symmetric non-Euclidean plates of thickness t with constant negative Gaussian curvature. We present a complete study of these plates using the Foppl-von Karman and Kirchhoff reduced theories of elasticity. Motivated by experimental results, we focus on deformations with a periodic profile. For the Foppl-von Karman model, we prove rigorously that minimizers of the elastic energy converge to saddle shaped isometric immersions. In studying this convergence, we prove rigorous upper and lower bounds for the energy that scale like the thickness t squared. Furthermore, for deformation with n-waves we prove that the lower bound scales like nt2 while the upper bound scales like n2t2. We also investigate the scaling with thickness of boundary layers where the stretching energy is concentrated with decreasing thickness. For the Kichhoff model, we investigate isometric immersions of disks with constant negative curvature into R2, and the minimizers for the bending energy, i.e. the L2 norm of the principal curvatures over the class of W2,2 isometric immersions. We show the existence of smooth immersions of arbitrarily large geodesic balls in the hyperbolic plane into Euclidean space. In elucidating the connection between these immersions and the non-existence/singularity results of Hilbert and Amsler, we obtain a lower bound for the L infinity norm of the principal curvatures for such smooth isometric immersions. We also construct piecewise smooth isometric immersions that have a periodic profile, are globally W2,2, and numerically have lower bending energy than their smooth counterparts. The number of periods in these configurations is set by the condition that the principal curvatures of the surface remain finite and grow approximately exponentially with the radius of the disc.

  11. Dynamic optical resource allocation for mobile core networks with software defined elastic optical networking.

    PubMed

    Zhao, Yongli; Chen, Zhendong; Zhang, Jie; Wang, Xinbo

    2016-07-25

    Driven by the forthcoming of 5G mobile communications, the all-IP architecture of mobile core networks, i.e. evolved packet core (EPC) proposed by 3GPP, has been greatly challenged by the users' demands for higher data rate and more reliable end-to-end connection, as well as operators' demands for low operational cost. These challenges can be potentially met by software defined optical networking (SDON), which enables dynamic resource allocation according to the users' requirement. In this article, a novel network architecture for mobile core network is proposed based on SDON. A software defined network (SDN) controller is designed to realize the coordinated control over different entities in EPC networks. We analyze the requirement of EPC-lightpath (EPCL) in data plane and propose an optical switch load balancing (OSLB) algorithm for resource allocation in optical layer. The procedure of establishment and adjustment of EPCLs is demonstrated on a SDON-based EPC testbed with extended OpenFlow protocol. We also evaluate the OSLB algorithm through simulation in terms of bandwidth blocking ratio, traffic load distribution, and resource utilization ratio compared with link-based load balancing (LLB) and MinHops algorithms. PMID:27464120

  12. Size effects and internal length scales in the elasticity of random fiber networks

    NASA Astrophysics Data System (ADS)

    Picu, Catalin; Berkache, Kamel; Shahsavari, Ali; Ganghoffer, Jean-Francois

    Random fiber networks are the structural element of many biological and man-made materials, including connective tissue, various consumer products and packaging materials. In all cases of practical interest the scale at which the material is used and the scale of the fiber diameter or the mean segment length of the network are separated by several orders of magnitude. This precludes solving boundary value problems defined on the scale of the application while resolving every fiber in the system, and mandates the development of continuum equivalent models. To this end, we study the intrinsic geometric and mechanical length scales of the network and the size effect associated with them. We consider both Cauchy and micropolar continuum models and calibrate them based on the discrete network behavior. We develop a method to predict the characteristic length scales of the problem and the minimum size of a representative element of the network based on network structural parameters and on fiber properties.

  13. Asymptotic analysis of mathematical models for elastic composite media

    NASA Astrophysics Data System (ADS)

    Serkov, S. K.

    The main subject of the thesis is the asymptotic analysis of models in mechanics of composite materials. It is based on the extension of the theory of the Polya-Szego tensors to the problems of homogenization and fracture. Such a technique allows one to obtain an asymptotic solution to a problem where most of numerical algorithms fail due to the presence of a singular perturbation. As a result of this work, a number of interesting effects have been found in optimization of composites and inverse problems of crack-inclusion interaction. Chapter 1 is an introductory chapter that contains the main definitions and bibliographical remarks. In Chapter 2 the Polya-Szego dipole tensors are employed for analysis of plane elasticity problems in non-homogeneous media. Classes of equivalence for defects (cavities and rigid inclusions) are specified for the Laplace and Navier operators: composite materials with defects of the same class have the same effective elastic moduli. Explicit asymptotic formulae for the effective compliance matrices of dilute composites are obtained. The problem of the optimal cavity shape is analyzed in Chapter 3. The analysis uses the Polya-Szego tensors calculated in Chapter 2. A new type of structure which is optimal for shear loading has been found. Properties of the optimal cavity are described. The crack-inclusion interaction problem considered in Chapter 4 has been solved by the asymptotic methods. An analysis of crack trajectories is performed in Chapter 5 for different types of defects and interface conditions. The algorithm employs the Polya-Szego tensors as integral characteristics describing the defect. Comparison with experimental data (Ceramic Centre, Bologna) is presented. In Chapter 6 we use the method of compound asymptotic expansions to treat the homogenization problem for thin-walled composites. The technique of boundary layer fields is employed to derive the junction condition in the region connecting thin walls. The asymptotic

  14. An Elastic Plastic Contact Model with Strain Hardening for the LAMMPS Granular Package

    SciTech Connect

    Kuhr, Bryan; Brake, Matthew Robert; Lechman, Jeremy B.

    2015-03-01

    The following details the implementation of an analytical elastic plastic contact model with strain hardening for normal im pacts into the LAMMPS granular package. The model assumes that, upon impact, the co llision has a period of elastic loading followed by a period of mixed elastic plas tic loading, with contributions to each mechanism estimated by a hyperbolic seca nt weight function. This function is implemented in the LAMMPS source code as the pair style gran/ep/history. Preliminary tests, simulating the pouring of pure nickel spheres, showed the elastic/plastic model took 1.66x as long as similar runs using gran/hertz/history.

  15. Elastic deformation and failure in protein filament bundles: atomistic simulations and coarse-grained modeling

    PubMed Central

    Hammond, N. A.

    2008-01-01

    The synthetic peptide RAD16-II has shown promise in tissue engineering and drug delivery. It has been studied as a vehicle for cell delivery and controlled release of IGF-1 to repair infarcted cardiac tissue, and as a scaffold to promote capillary formation for an in vitro model of angiogenesis. The structure of RAD16-II is hierarchical, with monomers forming long β-sheets that pair together to form filaments; filaments form bundles approximately 30–60 nm in diameter; branching networks of filament bundles form macroscopic gels. We investigate the mechanics of shearing between the two β-sheets constituting one filament, and between cohered filaments of RAD16-II. This shear loading is found in filament bundle bending or in tensile loading of fibers composed of partial-length filaments. Molecular dynamics simulations show that time to failure is a stochastic function of applied shear stress, and that for a given loading time behavior is elastic for sufficiently small shear loads. We propose a coarse-grained model based on Langevin dynamics that matches molecular dynamics results and facilities extending simulations in space and time. The model treats a filament as an elastic string of particles, each having potential energy that is a periodic function of its position relative to the neighboring filament. With insight from these simulations, we discuss strategies for strengthening RAD16-II and similar materials. PMID:18440063

  16. On the neural network calculation of the Lamé coefficients through eigenvalues of the elasticity operator

    NASA Astrophysics Data System (ADS)

    Ossandón, Sebastián; Reyes, Camilo

    2016-02-01

    A new numerical method is presented with the purpose to calculate the Lamé coefficients, associated with an elastic material, through eigenvalues of the elasticity operator. The finite element method is used to solve repeatedly, using different Lamé coefficients values, the direct problem by training a direct radial basis neural network. A map of eigenvalues, as a function of the Lamé constants, is then obtained. This relationship is later inverted and refined by training an inverse radial basis neural network, allowing calculation of mentioned coefficients. A numerical example is presented to prove the effectiveness of this novel method.

  17. Global model for the lithospheric strength and effective elastic thickness

    NASA Astrophysics Data System (ADS)

    Tesauro, Magdala; Kaban, Mikhail K.; Cloetingh, Sierd A. P. L.

    2013-08-01

    Global distribution of the strength and effective elastic thickness (Te) of the lithosphere are estimated using physical parameters from recent crustal and lithospheric models. For the Te estimation we apply a new approach, which provides a possibility to take into account variations of Young modulus (E) within the lithosphere. In view of the large uncertainties affecting strength estimates, we evaluate global strength and Te distributions for possible end-member 'hard' (HRM) and a 'soft' (SRM) rheology models of the continental crust. Temperature within the lithosphere has been estimated using a recent tomography model of Ritsema et al. (2011), which has much higher horizontal resolution than previous global models. Most of the strength is localized in the crust for the HRM and in the mantle for the SRM. These results contribute to the long debates on applicability of the "crème brulée" or "jelly-sandwich" model for the lithosphere structure. Changing from the SRM to HRM turns most of the continental areas from the totally decoupled mode to the fully coupled mode of the lithospheric layers. However, in the areas characterized by a high thermal regime and thick crust, the layers remain decoupled even for the HRM. At the same time, for the inner part of the cratons the lithospheric layers are coupled in both models. Therefore, rheological variations lead to large changes in the integrated strength and Te distribution in the regions characterized by intermediate thermal conditions. In these areas temperature uncertainties have a greater effect, since this parameter principally determines rheological behavior. Comparison of the Te estimates for both models with those determined from the flexural loading and spectral analysis shows that the 'hard' rheology is likely applicable for cratonic areas, whereas the 'soft' rheology is more representative for young orogens.

  18. Atomistic modeling of diffusional phasetransformations with elastic strain

    SciTech Connect

    Mason, D R; Rudd, R E; Sutton, A P

    2003-10-31

    Phase transformations in 2xxx series aluminium alloys (Al-Cu-Mg) are investigated with an off-lattice atomistic kinetic Monte Carlo simulation incorporating the effects of strain around misfitting atoms and vacancies. Atomic interactions are modelled by Finnis-Sinclair potentials constructed for these simulations. Vacancy diffusion is modelled by comparing the energies of trial states, where the system is partially relaxed for each trial state. No special requirements are made about the description of atomic interactions, making our approach suitable for more fundamentally based models such as tight binding if sufficient computational resources are available. Only a limited precision is required for the energy of each trial state, determined by the value of kBT. Since the change in the relaxation displacement field caused by a vacancy hop decays as 1/r{sup 3} , it is sufficient to determine the next move by relaxing only those atoms in a sphere of finite radius centred on the moving vacancy. However, once the next move has been selected, the entire system is relaxed. Simulations of the early stages of phase separation in Al-Cu with elastic relaxation show an enhanced rate of clustering compared to those performed on the same system with a rigid lattice.

  19. Modeling the dynamics of a tracer particle in an elastic active gel

    NASA Astrophysics Data System (ADS)

    Ben-Isaac, E.; Fodor, É.; Visco, P.; van Wijland, F.; Gov, Nir S.

    2015-07-01

    The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular motors, and distinct nonthermal behavior is observed. We present a theoretical model of the dynamics of a trapped active particle, which allows us to quantify the deviations from equilibrium behavior, using both analytic and numerical calculations. We map the different regimes of dynamics in this system and highlight the different manifestations of activity: breakdown of the virial theorem and equipartition, different elasticity-dependent "effective temperatures," and distinct non-Gaussian distributions. Our results shed light on puzzling observations in active gel experiments and provide physical interpretation of existing observations, as well as predictions for future studies.

  20. Modeling the dynamics of a tracer particle in an elastic active gel.

    PubMed

    Ben-Isaac, E; Fodor, É; Visco, P; van Wijland, F; Gov, Nir S

    2015-07-01

    The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular motors, and distinct nonthermal behavior is observed. We present a theoretical model of the dynamics of a trapped active particle, which allows us to quantify the deviations from equilibrium behavior, using both analytic and numerical calculations. We map the different regimes of dynamics in this system and highlight the different manifestations of activity: breakdown of the virial theorem and equipartition, different elasticity-dependent "effective temperatures," and distinct non-Gaussian distributions. Our results shed light on puzzling observations in active gel experiments and provide physical interpretation of existing observations, as well as predictions for future studies. PMID:26274211

  1. Modeling the elastic energy of alloys: Potential pitfalls of continuum treatments.

    PubMed

    Baskaran, Arvind; Ratsch, Christian; Smereka, Peter

    2015-12-01

    Some issues that arise when modeling elastic energy for binary alloys are discussed within the context of a Keating model and density-functional calculations. The Keating model is a simplified atomistic formulation based on modeling elastic interactions of a binary alloy with harmonic springs whose equilibrium length is species dependent. It is demonstrated that the continuum limit for the strain field are the usual equations of linear elasticity for alloys and that they correctly capture the coarse-grained behavior of the displacement field. In addition, it is established that Euler-Lagrange equation of the continuum limit of the elastic energy will yield the same strain field equation. This is the same energy functional that is often used to model elastic effects in binary alloys. However, a direct calculation of the elastic energy atomistic model reveals that the continuum expression for the elastic energy is both qualitatively and quantitatively incorrect. This is because it does not take atomistic scale compositional nonuniformity into account. Importantly, this result also shows that finely mixed alloys tend to have more elastic energy than segregated systems, which is the exact opposite of predictions made by some continuum theories. It is also shown that for strained thin films the traditionally used effective misfit for alloys systematically underestimate the strain energy. In some models, this drawback is handled by including an elastic contribution to the enthalpy of mixing, which is characterized in terms of the continuum concentration. The direct calculation of the atomistic model reveals that this approach suffers serious difficulties. It is demonstrated that elastic contribution to the enthalpy of mixing is nonisotropic and scale dependent. It is also shown that such effects are present in density-functional theory calculations for the Si-Ge system. This work demonstrates that it is critical to include the microscopic arrangements in any elastic

  2. Critical review of elastic and plastic thermal contact conductance models and comparison with experiment

    SciTech Connect

    Sridhar, M.R.; Yovanovich, M.M. )

    1993-01-01

    More than 450 thermal contact resistance data points obtained from isotropic conforming rough surfaces for five different materials; Ni200, SS304, two Zirconium alloys and Al6061 have been compared with the existing elastic and plastic models. For the first time data have been reduced to a dimensionless form assuming both elastic as well as plastic deformation. Normally data were compared with either the elastic model or the plastic model assuming a type of deformation a priori. The relative merits of different models and the surface factors influencing the mode of deformation are still not clear. Hence the aim of the present work was to compare most of the models available in the literature with themselves as well as with isotropic data. Comparison showed that generally smoother surfaces deform elastically and rougher ones plastically. However there are some data sets which compare well with both the elastic as well as the plastic models. 20 refs.

  3. The Elastic Body Model: A Pedagogical Approach Integrating Real Time Measurements and Modelling Activities

    ERIC Educational Resources Information Center

    Fazio, C.; Guastella, I.; Tarantino, G.

    2007-01-01

    In this paper, we describe a pedagogical approach to elastic body movement based on measurements of the contact times between a metallic rod and small bodies colliding with it and on modelling of the experimental results by using a microcomputer-based laboratory and simulation tools. The experiments and modelling activities have been built in the…

  4. Estimation of Elastic Modulus of Intact Rocks by Artificial Neural Network

    NASA Astrophysics Data System (ADS)

    Ocak, Ibrahim; Seker, Sadi Evren

    2012-11-01

    The modulus of elasticity of intact rock ( E i) is an important rock property that is used as an input parameter in the design stage of engineering projects such as dams, slopes, foundations, tunnel constructions and mining excavations. However, it is sometimes difficult to determine the modulus of elasticity in laboratory tests because high-quality cores are required. For this reason, various methods for predicting E i have been popular research topics in recently published literature. In this study, the relationships between the uniaxial compressive strength, unit weight ( γ) and E i for different types of rocks were analyzed, employing an artificial neural network and 195 data obtained from laboratory tests carried out on cores obtained from drilling holes within the area of three metro lines in Istanbul, Turkey. Software was developed in Java language using Weka class libraries for the study. To determine the prediction capacity of the proposed technique, the root-mean-square error and the root relative squared error indices were calculated as 0.191 and 92.587, respectively. Both coefficients indicate that the prediction capacity of the study is high for practical use.

  5. Double porosity modeling in elastic wave propagation for reservoir characterization

    SciTech Connect

    Berryman, J. G., LLNL

    1998-06-01

    Phenomenological equations for the poroelastic behavior of a double porosity medium have been formulated and the coefficients in these linear equations identified. The generalization from a single porosity model increases the number of independent coefficients from three to six for an isotropic applied stress. In a quasistatic analysis, the physical interpretations are based upon considerations of extremes in both spatial and temporal scales. The limit of very short times is the one most relevant for wave propagation, and in this case both matrix porosity and fractures behave in an undrained fashion. For the very long times more relevant for reservoir drawdown,the double porosity medium behaves as an equivalent single porosity medium At the macroscopic spatial level, the pertinent parameters (such as the total compressibility) may be determined by appropriate field tests. At the mesoscopic scale pertinent parameters of the rock matrix can be determined directly through laboratory measurements on core, and the compressibility can be measured for a single fracture. We show explicitly how to generalize the quasistatic results to incorporate wave propagation effects and how effects that are usually attributed to squirt flow under partially saturated conditions can be explained alternatively in terms of the double-porosity model. The result is therefore a theory that generalizes, but is completely consistent with, Biot`s theory of poroelasticity and is valid for analysis of elastic wave data from highly fractured reservoirs.

  6. An elastic model of partial budding of retroviruses

    NASA Astrophysics Data System (ADS)

    Zhang, Rui; Nguyen, Toan

    2008-03-01

    Retroviruses are characterized by their unique infection strategy of reverse transcription, in which the genetic information flows from RNA back to DNA. The most well known representative is the human immunodeficiency virus (HIV). Unlike budding of traditional enveloped viruses, retrovirus budding happens together with the formation of spherical virus capsids at the cell membrane. Led by this unique budding mechanism, we proposed an elastic model of retrovirus budding in this work. We found that if the lipid molecules of the membrane are supplied fast enough from the cell interior, the budding always proceeds to completion. In the opposite limit, there is an optimal size of partially budded virions. The zenith angle of these partially spherical capsids, α, is given by α˜(2̂/κσ)^1/4, where κ is the bending modulus of the membrane, σ is the surface tension of the membrane, and τ characterizes the strength of capsid protein interaction. If τ is large enough such that α˜π, the budding is complete. Our model explained many features of retrovirus partial budding observed in experiments.

  7. Piezoresistive Sensor with High Elasticity Based on 3D Hybrid Network of Sponge@CNTs@Ag NPs.

    PubMed

    Zhang, Hui; Liu, Nishuang; Shi, Yuling; Liu, Weijie; Yue, Yang; Wang, Siliang; Ma, Yanan; Wen, Li; Li, Luying; Long, Fei; Zou, Zhengguang; Gao, Yihua

    2016-08-31

    Pressure sensors with high elasticity are in great demand for the realization of intelligent sensing, but there is a need to develope a simple, inexpensive, and scalable method for the manufacture of the sensors. Here, we reported an efficient, simple, facile, and repeatable "dipping and coating" process to manufacture a piezoresistive sensor with high elasticity, based on homogeneous 3D hybrid network of carbon nanotubes@silver nanoparticles (CNTs@Ag NPs) anchored on a skeleton sponge. Highly elastic, sensitive, and wearable sensors are obtained using the porous structure of sponge and the synergy effect of CNTs/Ag NPs. Our sensor was also tested for over 2000 compression-release cycles, exhibiting excellent elasticity and cycling stability. Sensors with high performance and a simple fabrication process are promising devices for commercial production in various electronic devices, for example, sport performance monitoring and man-machine interfaces. PMID:27482721

  8. Visualizing tropoelastin in a long-term human elastic fibre cell culture model

    PubMed Central

    Halm, M.; Schenke-Layland, K.; Jaspers, S.; Wenck, H.; Fischer, F.

    2016-01-01

    Elastin is an essential protein found in a variety of tissues where resilience and flexibility are needed, such as the skin and the heart. When aiming to engineer suitable implants, elastic fibres are needed to allow adequate tissue renewal. However, the visualization of human elastogenesis remains in the dark. To date, the visualization of human tropoelastin (TE) production in a human cell context and its fibre assembly under live cell conditions has not been achieved. Here, we present a long-term cell culture model of human dermal fibroblasts expressing fluorescence-labelled human TE. We employed a lentiviral system to stably overexpress Citrine-labelled TE to build a fluorescent fibre network. Using immunofluorescence, we confirmed the functionality of the Citrine-tagged TE. Furthermore, we visualized the fibre assembly over the course of several days using confocal microscopy. Applying super resolution microscopy, we were able to investigate the inner structure of the elastin–fibrillin-1 fibre network. Future investigations will allow the tracking of TE produced under various conditions. In tissue engineering applications the fluorescent fibre network can be visualized under various conditions or it serves as a tool for investigating fibre degradation processes in disease-in-a-dish-models. PMID:26842906

  9. Simple model for directed networks

    NASA Astrophysics Data System (ADS)

    Morelli, Luis G.

    2003-06-01

    We study a model for directed networks based on the Watts-Stogatz model for small-world phenomena. We focus on some topological aspects of directed networks inspired in food web theory, namely, the fraction of basal and top nodes in the network and node level distributions. We argue that in directed networks basal nodes play an important role, collecting information or resources from the environment. We give analytical expressions for the fraction of basal and top nodes for the model, and study the node level distributions with numerical simulations.

  10. Introduction to physical properties and elasticity models: Chapter 20

    USGS Publications Warehouse

    Dvorkin, Jack; Helgerud, Michael B.; Waite, William F.; Kirby, Stephen H.; Nur, Amos

    2003-01-01

    Estimating the in situ methane hydrate volume from seismic surveys requires knowledge of the rock physics relations between wave speeds and elastic moduli in hydrate/sediment mixtures. The elastic moduli of hydrate/sediment mixtures depend on the elastic properties of the individual sedimentary particles and the manner in which they are arranged. In this chapter, we present some rock physics data currently available from literature. The unreferenced values in Table I were not measured directly, but were derived from other values in Tables I and II using standard relationships between elastic properties for homogeneous, isotropic material. These derivations allow us to extend the list of physical property estimates, but at the expense of introducing uncertainties due to combining property values measured under different physical conditions. This is most apparent in the case of structure II (sII) hydrate for which very few physical properties have been measured under identical conditions.

  11. Freeze fracturing of elastic porous media: a mathematical model

    PubMed Central

    Vlahou, I.; Worster, M. G.

    2015-01-01

    We present a mathematical model of the fracturing of water-saturated rocks and other porous materials in cold climates. Ice growing inside porous rocks causes large pressures to develop that can significantly damage the rock. We study the growth of ice inside a penny-shaped cavity in a water-saturated porous rock and the consequent fracturing of the medium. Premelting of the ice against the rock, which results in thin films of unfrozen water forming between the ice and the rock, is one of the dominant processes of rock fracturing. We find that the fracture toughness of the rock, the size of pre-existing faults and the undercooling of the environment are the main parameters determining the susceptibility of a medium to fracturing. We also explore the dependence of the growth rates on the permeability and elasticity of the medium. Thin and fast-fracturing cracks are found for many types of rocks. We consider how the growth rate can be limited by the existence of pore ice, which decreases the permeability of a medium, and propose an expression for the effective ‘frozen’ permeability. PMID:25792954

  12. Complex Networks in Psychological Models

    NASA Astrophysics Data System (ADS)

    Wedemann, R. S.; Carvalho, L. S. A. V. D.; Donangelo, R.

    We develop schematic, self-organizing, neural-network models to describe mechanisms associated with mental processes, by a neurocomputational substrate. These models are examples of real world complex networks with interesting general topological structures. Considering dopaminergic signal-to-noise neuronal modulation in the central nervous system, we propose neural network models to explain development of cortical map structure and dynamics of memory access, and unify different mental processes into a single neurocomputational substrate. Based on our neural network models, neurotic behavior may be understood as an associative memory process in the brain, and the linguistic, symbolic associative process involved in psychoanalytic working-through can be mapped onto a corresponding process of reconfiguration of the neural network. The models are illustrated through computer simulations, where we varied dopaminergic modulation and observed the self-organizing emergent patterns at the resulting semantic map, interpreting them as different manifestations of mental functioning, from psychotic through to normal and neurotic behavior, and creativity.

  13. Assortative model for social networks.

    PubMed

    Catanzaro, Michele; Caldarelli, Guido; Pietronero, Luciano

    2004-09-01

    In this Brief Report we present a version of a network growth model, generalized in order to describe the behavior of social networks. The case of study considered is the preprint archive at cul.arxiv.org. Each node corresponds to a scientist, and a link is present whenever two authors wrote a paper together. This graph is a nice example of degree-assortative network, that is, to say a network where sites with similar degree are connected to each other. The model presented is one of the few able to reproduce such behavior, giving some insight on the microscopic dynamics at the basis of the graph structure. PMID:15524673

  14. A staggered-grid convolutional differentiator for elastic wave modelling

    NASA Astrophysics Data System (ADS)

    Sun, Weijia; Zhou, Binzhong; Fu, Li-Yun

    2015-11-01

    The computation of derivatives in governing partial differential equations is one of the most investigated subjects in the numerical simulation of physical wave propagation. An analytical staggered-grid convolutional differentiator (CD) for first-order velocity-stress elastic wave equations is derived in this paper by inverse Fourier transformation of the band-limited spectrum of a first derivative operator. A taper window function is used to truncate the infinite staggered-grid CD stencil. The truncated CD operator is almost as accurate as the analytical solution, and as efficient as the finite-difference (FD) method. The selection of window functions will influence the accuracy of the CD operator in wave simulation. We search for the optimal Gaussian windows for different order CDs by minimizing the spectral error of the derivative and comparing the windows with the normal Hanning window function for tapering the CD operators. It is found that the optimal Gaussian window appears to be similar to the Hanning window function for tapering the same CD operator. We investigate the accuracy of the windowed CD operator and the staggered-grid FD method with different orders. Compared to the conventional staggered-grid FD method, a short staggered-grid CD operator achieves an accuracy equivalent to that of a long FD operator, with lower computational costs. For example, an 8th order staggered-grid CD operator can achieve the same accuracy of a 16th order staggered-grid FD algorithm but with half of the computational resources and time required. Numerical examples from a homogeneous model and a crustal waveguide model are used to illustrate the superiority of the CD operators over the conventional staggered-grid FD operators for the simulation of wave propagations.

  15. Elastic Coupling of Nascent apCAM Adhesions to Flowing Actin Networks

    PubMed Central

    Mejean, Cecile O.; Schaefer, Andrew W.; Buck, Kenneth B.; Kress, Holger; Shundrovsky, Alla; Merrill, Jason W.; Dufresne, Eric R.; Forscher, Paul

    2013-01-01

    Adhesions are multi-molecular complexes that transmit forces generated by a cell’s acto-myosin networks to external substrates. While the physical properties of some of the individual components of adhesions have been carefully characterized, the mechanics of the coupling between the cytoskeleton and the adhesion site as a whole are just beginning to be revealed. We characterized the mechanics of nascent adhesions mediated by the immunoglobulin-family cell adhesion molecule apCAM, which is known to interact with actin filaments. Using simultaneous visualization of actin flow and quantification of forces transmitted to apCAM-coated beads restrained with an optical trap, we found that adhesions are dynamic structures capable of transmitting a wide range of forces. For forces in the picoNewton scale, the nascent adhesions’ mechanical properties are dominated by an elastic structure which can be reversibly deformed by up to 1 µm. Large reversible deformations rule out an interface between substrate and cytoskeleton that is dominated by a number of stiff molecular springs in parallel, and favor a compliant cross-linked network. Such a compliant structure may increase the lifetime of a nascent adhesion, facilitating signaling and reinforcement. PMID:24039928

  16. Shared end-to-content backup path protection in k-node (edge) content connected elastic optical datacenter networks.

    PubMed

    Li, Xin; Huang, Shanguo; Yin, Shan; Guo, Bingli; Zhao, Yongli; Zhang, Jie; Zhang, Min; Gu, Wanyi

    2016-05-01

    To quantitatively measure content connectivity and provide protection for different kinds of content, the concept of k-node (edge) content connectivity is proposed recently. Based on k-node (edge) content connectivity, k-node (edge) content connected elastic optical datacenter network (KC-EODN) is proposed to design disaster-resilient and spectrum-efficient optical datacenter networks. In KC-EODN, k independent end-to-content paths are established for each request. However, it will consume too much resource to assign dedicated spectrum for each end-to-content path. Spectrum sharing among multiple end-to-content paths of different requests can greatly improve resource efficiency. In this paper, a novel perfect matching based sharing principle among multiple end-to-content paths of different requests is proposed. Based on the new proposed sharing principle, we present the shared end-to-content backup path protection (SEBPP) scheme for KC-EODN. Integer linear program (ILP) model and heuristic algorithms are designed for SEBPP scheme with the objective of minimizing the total of working and backup spectrum resources. Numerical results show that the proposed SEBPP scheme can greatly reduce spectrum consumption while ensuring the survivability against natural disaster and multi-failures. PMID:27137559

  17. Hybrid routing and spectrum assignment algorithms based on distance-adaptation combined coevolution and heuristics in elastic optical networks

    NASA Astrophysics Data System (ADS)

    Ding, Zhe; Xu, Zhanqi; Zeng, Xiaodong; Ma, Tao; Yang, Fan

    2014-04-01

    By adopting the orthogonal frequency division multiplexing technology, spectrum-sliced elastic optical path networks can offer flexible bandwidth to each connection request and utilize the spectrum resources efficiently. The routing and spectrum assignment (RSA) problems in SLICE networks are solved by using heuristic algorithms in most prior studies and addressed by intelligent algorithms in few investigations. The performance of RSA algorithms can be further improved if we could combine such two types of algorithms. Therefore, we propose three hybrid RSA algorithms: DACE-GMSF, DACE-GLPF, and DACE-GEMkPSF, which are the combination of the heuristic algorithm and coevolution based on distance-adaptive policy. In the proposed algorithms, we first groom the connection requests, then sort the connection requests by using the heuristic algorithm (most subcarriers first, longest path first, and extended most k paths' slots first), and finally search the approximately optimal solution with the coevolutionary policy. We present a model of the RSA problem by using integral linear programming, and key elements in the proposed algorithms are addressed in detail. Simulations under three topologies show that the proposed hybrid RSA algorithms can save spectrum resources efficiently.

  18. Modeling thermal-mechanical behavior of networks with reconfigurable crosslinks

    NASA Astrophysics Data System (ADS)

    Yang, Jeh-Chang; Meng, Yuan; Anthamatten, Mitchell

    Actively moving polymers nearly always involve the storage or release of mechanical energy using external stimuli. Thermomechanical experiments were conducted on well-defined chemical networks bearing both permanent and light-reconfigurable covalent junctions. Experimental data include stress relaxation and mechanical creep during photoinduced network reconfiguration as well as equilibrium stress-strain behavior of reprogrammed networks. Physical models of elastic networks were applied to describe thermomechanical behavior during and after bond re-formation while under external stress. The role of dangling ends in influencing competitive network mechanics is evaluated to explain observed phenomena and discrepancies between theory and data. Understanding how process path is related to the equilibrium thermomechanics of such reprogrammed networks is important to engineering shape actuator driven by crystallization. Nsf ECCS-1530540.

  19. Analysis of Nonlinear Poro-Elastic and Poro-Visco-Elastic Models

    NASA Astrophysics Data System (ADS)

    Bociu, Lorena; Guidoboni, Giovanna; Sacco, Riccardo; Webster, Justin T.

    2016-07-01

    We consider the initial and boundary value problem for a system of partial differential equations describing the motion of a fluid-solid mixture under the assumption of full saturation. The ability of the fluid phase to flow within the solid skeleton is described by the permeability tensor, which is assumed here to be a multiple of the identity and to depend nonlinearly on the volumetric solid strain. In particular, we study the problem of the existence of weak solutions in bounded domains, accounting for non-zero volumetric and boundary forcing terms. We investigate the influence of viscoelasticity on the solution functional setting and on the regularity requirements for the forcing terms. The theoretical analysis shows that different time regularity requirements are needed for the volumetric source of linear momentum and the boundary source of traction depending on whether or not viscoelasticity is present. The theoretical results are further investigated via numerical simulations based on a novel dual mixed hybridized finite element discretization. When the data are sufficiently regular, the simulations show that the solutions satisfy the energy estimates predicted by the theoretical analysis. Interestingly, the simulations also show that, in the purely elastic case, the Darcy velocity and the related fluid energy might become unbounded if indeed the data do not enjoy the time regularity required by the theory.

  20. Rigid-plug elastic-water model for transient pipe flow with entrapped air pocket

    SciTech Connect

    Zhou, Ling; Liu, Prof. Deyou; Karney, Professor Byran W.; Zhang, Qin Fen; OU, CHANGQI

    2011-01-01

    Pressure transients in a rapidly filling pipe with an entrapped air pocket are investigated analytically. A rigid-plug elastic water model is developed by applying elastic water hammer to the majority of the water column while applying rigid water analysis to a small portion near the air-water interface, which avoids effectively the interpolation error of previous approaches. Moreover, another two simplified models are introduced respectively based on constant water length and by neglecting water elasticity. Verification of the three models is confirmed by experimental results. Calculations show that the simplification of constant water length is feasible for small air pockets. The complete rigid water model is appropriate for cases with large initial air volume. The rigid-plug elastic model can predict all the essential features for the entire range of initial air fraction considered in this study, and it is the effective model for analysis of pressure transients of entrapped air.

  1. Campus network security model study

    NASA Astrophysics Data System (ADS)

    Zhang, Yong-ku; Song, Li-ren

    2011-12-01

    Campus network security is growing importance, Design a very effective defense hacker attacks, viruses, data theft, and internal defense system, is the focus of the study in this paper. This paper compared the firewall; IDS based on the integrated, then design of a campus network security model, and detail the specific implementation principle.

  2. Elastic body spline technique for feature point generation and face modeling.

    PubMed

    Kuo, Chung J; Hung, Jui-Hsin; Tsai, Meng-Han; Shih, Po-Liang

    2005-12-01

    Due to the advent of MPEG-4 standard, facial animation has been receiving significant attention lately. A common approach for facial animation is to use the mesh model. The physics-based transformation, elastic body spline (EBS), has been proposed to deform the facial mesh model and generate realistic expression by assuming the whole facial image has the same elastic property. In this paper, we partition facial images into different regions and propose an iterative algorithm to find the elastic property of each facial region. By doing so, we can obtain the EBS for mesh vertices in the facial mesh model such that facial animation can be more realistically achieved. PMID:16370468

  3. Modeling viscoelastic networks and cell deformation in the context of the immersed boundary method

    SciTech Connect

    Bottino, D.C.

    1998-11-20

    The author presents a straightforward numerical technique for modeling passive viscoelastic networks, such as the actin cytoskeleton of ameboid cells, in the context of the immersed boundary method. The technique involves modeling the cytoskeletal material as a network of dynamic elastic links immersed in the ambient cytosol. Linking rules of varying complexity allow the numerical network to exhibit varying degrees of viscosity, elasticity, shear thinning, and thixotropy (stress-overshoot). A series of simulated viscometer tests are used to analyze the mechanical properties of the model networks and the effects of input parameters on these properties. The numerical network is then used in the context of a full-cell model involving simulated micropipette aspiration. These micropipette aspiration tests indicate that the immersed boundary method--with the added enhancement of the viscoelastic network model presented here--can be developed into a versatile tool for studying the free-boundary deformations of passively stressed and actively moving ameboid cells.

  4. On the origin of Gaussian network theory in the thermo/chemo-responsive shape memory effect of amorphous polymers undergoing photo-elastic transition

    NASA Astrophysics Data System (ADS)

    Lu, Haibao; Huang, Wei Min; Leng, Jinsong

    2016-06-01

    Amorphous polymers are normally isotropic in their physical properties, however, upon stress their structural randomness is disturbed and they become anisotropic. There is a close connection between the optical anisotropy and the elastic (or mechanical) anisotropy, since both are related to the type of symmetry exhibited by the molecular structure. On the origin of Gaussian network theory, a phenomenological constitutive framework was proposed to study the photo-elastic transition and working mechanism of the thermo-/chemo-responsive shape-memory effect (SME) in amorphous shape memory polymers (SMPs). Optically refractive index was initially employed to couple the stress, strain and the anisotropy of the random link in macromolecule chain. Based on the Arrhenius law, a constitutive framework was then applied for the temperature dependence of optical (or elastic or mechanical) anisotropy according to the fictive temperature parameter. Finally, the phenomenological photo-elastic model was proposed to quantitatively identify the influential factors behind the thermo-/chemo-responsive SME in SMPs, of which the shape recovery behavior is predicted and verified by the available experimental data reported in the literature.

  5. Evaluation of massless-spring modeling of suspension-line elasticity during the parachute unfurling process

    NASA Technical Reports Server (NTRS)

    Poole, L. R.; Huckins, E. K., III

    1972-01-01

    A general theory on mathematical modeling of elastic parachute suspension lines during the unfurling process was developed. Massless-spring modeling of suspension-line elasticity was evaluated in detail. For this simple model, equations which govern the motion were developed and numerically integrated. The results were compared with flight test data. In most regions, agreement was satisfactory. However, poor agreement was obtained during periods of rapid fluctuations in line tension.

  6. Transient Networks and Dense Colloidal Suspensions: From Viscous Flow to Elastic Instabilities

    NASA Astrophysics Data System (ADS)

    Bouchaud, Elisabeth

    2013-03-01

    In order to analyze the mechanical response of viscoelastic materials in highly non-linear regimes, we have designed a new kind of Hele-Shaw cell where both viscous liquids and soft elastic solids can be tested at a controlled loading rate. We first consider model Maxwell liquids - characterized by a single relaxation time - with the project of benchmarking the response of complex, glassy systems. We use several solutions of microemulsions connected by telechelic polymers. We show that these materials undergo instability in a broad range of loading rates. At low rates, this instability is shown to be of the viscous Saffman-Taylor type. At high rates, we observe a purely elastic bulk instability discovered recently in the context of soft elastomers. A microfluidic version of our cell makes it possible to study the response of colloidal suspensions. We use more or less concentrated PNIPA aqueous solutions for which temperature controls the volume fraction. Observations are interpreted in the light of our understanding of their viscoelastic properties. This work was done in collaboration with Maxime Lefranc, Baudouin Saintyves, Olivier Dauchot and Serge Mora. It was funded by ANR, France.

  7. A micromechanical damage and fracture model for polymers based on fractional strain-gradient elasticity

    NASA Astrophysics Data System (ADS)

    Heyden, S.; Li, B.; Weinberg, K.; Conti, S.; Ortiz, M.

    2015-01-01

    We formulate a simple one-parameter macroscopic model of distributed damage and fracture of polymers that is amenable to a straightforward and efficient numerical implementation. We show that the macroscopic model can be rigorously derived, in the sense of optimal scaling, from a micromechanical model of chain elasticity and failure regularized by means of fractional strain-gradient elasticity. In particular, we derive optimal scaling laws that supply a link between the single parameter of the macroscopic model, namely, the critical energy-release rate of the material, and micromechanical parameters pertaining to the elasticity and strength of the polymer chains and to the strain-gradient elasticity regularization. We show how the critical energy-release rate of specific materials can be determined from test data. Finally, we demonstrate the scope and fidelity of the model by means of an example of application, namely, Taylor-impact experiments of polyurea 1000 rods.

  8. Neural network modeling of emotion

    NASA Astrophysics Data System (ADS)

    Levine, Daniel S.

    2007-03-01

    This article reviews the history and development of computational neural network modeling of cognitive and behavioral processes that involve emotion. The exposition starts with models of classical conditioning dating from the early 1970s. Then it proceeds toward models of interactions between emotion and attention. Then models of emotional influences on decision making are reviewed, including some speculative (not and not yet simulated) models of the evolution of decision rules. Through the late 1980s, the neural networks developed to model emotional processes were mainly embodiments of significant functional principles motivated by psychological data. In the last two decades, network models of these processes have become much more detailed in their incorporation of known physiological properties of specific brain regions, while preserving many of the psychological principles from the earlier models. Most network models of emotional processes so far have dealt with positive and negative emotion in general, rather than specific emotions such as fear, joy, sadness, and anger. But a later section of this article reviews a few models relevant to specific emotions: one family of models of auditory fear conditioning in rats, and one model of induced pleasure enhancing creativity in humans. Then models of emotional disorders are reviewed. The article concludes with philosophical statements about the essential contributions of emotion to intelligent behavior and the importance of quantitative theories and models to the interdisciplinary enterprise of understanding the interactions of emotion, cognition, and behavior.

  9. A Network Synthesis Model for Generating Protein Interaction Network Families

    PubMed Central

    Sahraeian, Sayed Mohammad Ebrahim; Yoon, Byung-Jun

    2012-01-01

    In this work, we introduce a novel network synthesis model that can generate families of evolutionarily related synthetic protein–protein interaction (PPI) networks. Given an ancestral network, the proposed model generates the network family according to a hypothetical phylogenetic tree, where the descendant networks are obtained through duplication and divergence of their ancestors, followed by network growth using network evolution models. We demonstrate that this network synthesis model can effectively create synthetic networks whose internal and cross-network properties closely resemble those of real PPI networks. The proposed model can serve as an effective framework for generating comprehensive benchmark datasets that can be used for reliable performance assessment of comparative network analysis algorithms. Using this model, we constructed a large-scale network alignment benchmark, called NAPAbench, and evaluated the performance of several representative network alignment algorithms. Our analysis clearly shows the relative performance of the leading network algorithms, with their respective advantages and disadvantages. The algorithm and source code of the network synthesis model and the network alignment benchmark NAPAbench are publicly available at http://www.ece.tamu.edu/bjyoon/NAPAbench/. PMID:22912671

  10. Elastic properties of alpha quartz and the alkali halides based on an interatomic force model.

    NASA Technical Reports Server (NTRS)

    Weidner, D. J.; Simmons, G.

    1972-01-01

    A two-body central-force atomic model can be used to describe accurately the elastic properties of alpha quartz if the nontetrahedral O:O forces are included. The strength of the Si:O interaction has little effect on the bulk modulus. The technique is sufficiently general to allow calculations of the elastic properties of a specified structure under arbitrary pressure from a complete description of the interatomic forces. The elastic constants for the NaCl structure and the CsCl structure are examined. Our model includes two-body, central, anion-anion, anion-cation, and electrostatic interactions.

  11. Mechanical Model Analysis for Quantitative Evaluation of Liver Fibrosis Based on Ultrasound Tissue Elasticity Imaging

    NASA Astrophysics Data System (ADS)

    Shiina, Tsuyoshi; Maki, Tomonori; Yamakawa, Makoto; Mitake, Tsuyoshi; Kudo, Masatoshi; Fujimoto, Kenji

    2012-07-01

    Precise evaluation of the stage of chronic hepatitis C with respect to fibrosis has become an important issue to prevent the occurrence of cirrhosis and to initiate appropriate therapeutic intervention such as viral eradication using interferon. Ultrasound tissue elasticity imaging, i.e., elastography can visualize tissue hardness/softness, and its clinical usefulness has been studied to detect and evaluate tumors. We have recently reported that the texture of elasticity image changes as fibrosis progresses. To evaluate fibrosis progression quantitatively on the basis of ultrasound tissue elasticity imaging, we introduced a mechanical model of fibrosis progression and simulated the process by which hepatic fibrosis affects elasticity images and compared the results with those clinical data analysis. As a result, it was confirmed that even in diffuse diseases like chronic hepatitis, the patterns of elasticity images are related to fibrous structural changes caused by hepatic disease and can be used to derive features for quantitative evaluation of fibrosis stage.

  12. The Elastic Behaviour of Sintered Metallic Fibre Networks: A Finite Element Study by Beam Theory

    PubMed Central

    Bosbach, Wolfram A.

    2015-01-01

    Background The finite element method has complimented research in the field of network mechanics in the past years in numerous studies about various materials. Numerical predictions and the planning efficiency of experimental procedures are two of the motivational aspects for these numerical studies. The widespread availability of high performance computing facilities has been the enabler for the simulation of sufficiently large systems. Objectives and Motivation In the present study, finite element models were built for sintered, metallic fibre networks and validated by previously published experimental stiffness measurements. The validated models were the basis for predictions about so far unknown properties. Materials and Methods The finite element models were built by transferring previously published skeletons of fibre networks into finite element models. Beam theory was applied as simplification method. Results and Conclusions The obtained material stiffness isn’t a constant but rather a function of variables such as sample size and boundary conditions. Beam theory offers an efficient finite element method for the simulated fibre networks. The experimental results can be approximated by the simulated systems. Two worthwhile aspects for future work will be the influence of size and shape and the mechanical interaction with matrix materials. PMID:26569603

  13. Freight Network Equilibrium Model revisited: the Freight Network Modeling System

    SciTech Connect

    Tobin, R.L.

    1984-01-01

    The Freight Network Equilibrium Model (FNEM) was developed to study potential coal transportation impacts that could result from widespread conversion of boilers to use coal for fuel, as mandated under the Powerplant and Industrial Fuel Use Act of 1978. Continued improvement of FNEM and creation of auxiliary software and data during applications of the model in various transportation analyses led to the development of the Freight Network Modeling System, a general and flexible modeling system designed to have wide applicability to a variety of freight transportation analyses. It consists of compatible network data bases, data management software, models of freight transportation, report generators, and graphics output. The network data include US rail, water, highway, and pipeline systems. Data management software automates the task of setting up a study network of appropriate detail in appropriate regions of the country. The major analytical tools in the system are FNEM and Shortest Path Analysis and Display (SPAD); FNEM is predictive and simulates decisions of both shippers and carriers, taking into account the competition for transportation facilities; SPAD is a simpler model that optimizes routings of single shipments. Output for both FNEM and SPAD includes detailed routings, cost and delay estimates for all shipments, and data on total traffic levels. SPAD can be used interactively with routes displayed graphically. 13 references, 10 figures, 2 tables.

  14. Identification of thin elastic isotropic plate parameters applying Guided Wave Measurement and Artificial Neural Networks

    NASA Astrophysics Data System (ADS)

    Pabisek, Ewa; Waszczyszyn, Zenon

    2015-12-01

    A new hybrid computational system for material identification (HCSMI) is presented, developed for the identification of homogeneous, elastic, isotropic plate parameters. Attention is focused on the construction of dispersion curves, related to Lamb waves. The main idea of the system HCSMI lies in separation of two essential basic computational stages, corresponding to direct or inverse analyses. In the frame of the first stage an experimental dispersion curve DCexp is constructed, applying Guided Wave Measurement (GWM) technique. Then, in the other stage, corresponding to the inverse analysis, an Artificial Neural Network (ANN) is trained 'off line'. The substitution of results of the first stage, treated as inputs of the ANN, gives the values of identified plate parameters. In such a way no iteration is needed, unlike to the classical approach. In such an approach, the "distance" between the approximate experimental curves DCexp and dispersion curves DCnum obtained in the direct analysis, is iteratively minimized. Two case studies are presented, corresponding either to measurements in laboratory tests or those related to pseudo-experimental noisy data of computer simulations. The obtained results prove high numerical efficiency of HCSMI, applied to the identification of aluminum plate parameters.

  15. POLICY VARIATION, LABOR SUPPLY ELASTICITIES, AND A STRUCTURAL MODEL OF RETIREMENT

    PubMed Central

    MANOLI, DAY; MULLEN, KATHLEEN J.; WAGNER, MATHIS

    2015-01-01

    This paper exploits a combination of policy variation from multiple pension reforms in Austria and administrative data from the Austrian Social Security Database. Using the policy changes for identification, we estimate social security wealth and accrual elasticities in individuals’ retirement decisions. Next, we use these elasticities to estimate a dynamic programming model of retirement decisions. Finally, we use the estimated model to examine the labor supply and welfare consequences of potential social security reforms. PMID:26472916

  16. Adaptive Models for Gene Networks

    PubMed Central

    Shin, Yong-Jun; Sayed, Ali H.; Shen, Xiling

    2012-01-01

    Biological systems are often treated as time-invariant by computational models that use fixed parameter values. In this study, we demonstrate that the behavior of the p53-MDM2 gene network in individual cells can be tracked using adaptive filtering algorithms and the resulting time-variant models can approximate experimental measurements more accurately than time-invariant models. Adaptive models with time-variant parameters can help reduce modeling complexity and can more realistically represent biological systems. PMID:22359614

  17. A Three-Dimensional Computational Model of Collagen Network Mechanics

    PubMed Central

    Lee, Byoungkoo; Zhou, Xin; Riching, Kristin; Eliceiri, Kevin W.; Keely, Patricia J.; Guelcher, Scott A.; Weaver, Alissa M.; Jiang, Yi

    2014-01-01

    Extracellular matrix (ECM) strongly influences cellular behaviors, including cell proliferation, adhesion, and particularly migration. In cancer, the rigidity of the stromal collagen environment is thought to control tumor aggressiveness, and collagen alignment has been linked to tumor cell invasion. While the mechanical properties of collagen at both the single fiber scale and the bulk gel scale are quite well studied, how the fiber network responds to local stress or deformation, both structurally and mechanically, is poorly understood. This intermediate scale knowledge is important to understanding cell-ECM interactions and is the focus of this study. We have developed a three-dimensional elastic collagen fiber network model (bead-and-spring model) and studied fiber network behaviors for various biophysical conditions: collagen density, crosslinker strength, crosslinker density, and fiber orientation (random vs. prealigned). We found the best-fit crosslinker parameter values using shear simulation tests in a small strain region. Using this calibrated collagen model, we simulated both shear and tensile tests in a large linear strain region for different network geometry conditions. The results suggest that network geometry is a key determinant of the mechanical properties of the fiber network. We further demonstrated how the fiber network structure and mechanics evolves with a local formation, mimicking the effect of pulling by a pseudopod during cell migration. Our computational fiber network model is a step toward a full biomechanical model of cellular behaviors in various ECM conditions. PMID:25386649

  18. Fractional-order elastic models of cartilage: A multi-scale approach

    NASA Astrophysics Data System (ADS)

    Magin, Richard L.; Royston, Thomas J.

    2010-03-01

    The objective of this research is to develop new quantitative methods to describe the elastic properties (e.g., shear modulus, viscosity) of biological tissues such as cartilage. Cartilage is a connective tissue that provides the lining for most of the joints in the body. Tissue histology of cartilage reveals a multi-scale architecture that spans a wide range from individual collagen and proteoglycan molecules to families of twisted macromolecular fibers and fibrils, and finally to a network of cells and extracellular matrix that form layers in the connective tissue. The principal cells in cartilage are chondrocytes that function at the microscopic scale by creating nano-scale networks of proteins whose biomechanical properties are ultimately expressed at the macroscopic scale in the tissue's viscoelasticity. The challenge for the bioengineer is to develop multi-scale modeling tools that predict the three-dimensional macro-scale mechanical performance of cartilage from micro-scale models. Magnetic resonance imaging (MRI) and MR elastography (MRE) provide a basis for developing such models based on the nondestructive biomechanical assessment of cartilage in vitro and in vivo. This approach, for example, uses MRI to visualize developing proto-cartilage structure, MRE to characterize the shear modulus of such structures, and fractional calculus to describe the dynamic behavior. Such models can be extended using hysteresis modeling to account for the non-linear nature of the tissue. These techniques extend the existing computational methods to predict stiffness and strength, to assess short versus long term load response, and to measure static versus dynamic response to mechanical loads over a wide range of frequencies (50-1500 Hz). In the future, such methods can perhaps be used to help identify early changes in regenerative connective tissue at the microscopic scale and to enable more effective diagnostic monitoring of the onset of disease.

  19. Simplified models of biological networks.

    PubMed

    Sneppen, Kim; Krishna, Sandeep; Semsey, Szabolcs

    2010-01-01

    The function of living cells is controlled by complex regulatory networks that are built of a wide diversity of interacting molecular components. The sheer size and intricacy of molecular networks of even the simplest organisms are obstacles toward understanding network functionality. This review discusses the achievements and promise of a bottom-up approach that uses well-characterized subnetworks as model systems for understanding larger networks. It highlights the interplay between the structure, logic, and function of various types of small regulatory circuits. The bottom-up approach advocates understanding regulatory networks as a collection of entangled motifs. We therefore emphasize the potential of negative and positive feedback, as well as their combinations, to generate robust homeostasis, epigenetics, and oscillations. PMID:20192769

  20. Coarse grain modeling of imperfect networks and gels

    NASA Astrophysics Data System (ADS)

    Sliozberg, Yelena; Chantawansri, Tanya; Sirk, Timothy; Andzelm, Jan; Mrozek, Randy; Lenhart, Joseph

    2013-03-01

    There is a strong interest in chemically and physically cross-linked entangled polymer networks and gels due to their tailorability in respect to both mechanical and structural properties. Even so, these properties are sensitive to imperfections in the polymer networks, such as dangling ends and loops. Computational modeling is a viable tool to understand the effects of these imperfections on properties in a controlled environment, in which specific defects can be systematically created and varied. In this study, we have employed generic bead-spring models of flexible chains to study a chemically and physically cross-linked network. Our results will show the importance defects, such as dangling ends and loops, on the mechanical and structural properties of these networks. We will also discuss the effects of these defects on the time-dependent elastic modulus. The simulation results qualitatively agree with experimental results and the other theoretical predictions.

  1. Numerical solution of an elastic and viscoelastic gravitational models by the finite element method

    NASA Astrophysics Data System (ADS)

    Arjona Almodóvar, A.; Chacón Rebollo, T.; Gómez Marmol, M.

    2014-12-01

    Volcanic areas present a lower effective viscosity than usually in the Earth's crust. Both the elastic-gravitational and the viscoelastic-gravitational models allow the computation of gravity, deformation, and gravitational potential changes in order to investigate crustal deformations of Earth (see for instance Battaglia & Segall, 2004; Fernández et al. 1999, 2001; Rundle 1980 and 1983). These models can be represented by a coupled system of linear parabolic (for the elastic deformations), hyperbolic (for the viscoelastic deformations) and elliptic partial differential equations (for gravitational potential changes) (see for instance Arjona et al. 2008 and 2010). The existence and uniqueness of weak solutions for both the elastic-gravitational and viscoelastic-gravitational problem was demonstrated in Arjona et al. (2008 and 2014). The stabilization to solutions of the associated stationary system was proved in Arjona and Díaz (2007). Here we consider the internal source as response to the effect of a pressurized magma reservoir into a multilayered, elastic-gravitational and viscoelastic-gravitational earth model. We introduce the numerical analysis of a simplified steady elastic-gravitational model, solved by means of the finite element method. We also present some numerical tests in realistic situations that confirm the predictions of theoretical order of convergence. Finally, we describe the methodology for both the elastic-gravitational and the viscoelastic-gravitational models using 2D and 3D test examples performed with FreeFEM++.

  2. The modified Black-Scholes model via constant elasticity of variance for stock options valuation

    NASA Astrophysics Data System (ADS)

    Edeki, S. O.; Owoloko, E. A.; Ugbebor, O. O.

    2016-02-01

    In this paper, the classical Black-Scholes option pricing model is visited. We present a modified version of the Black-Scholes model via the application of the constant elasticity of variance model (CEVM); in this case, the volatility of the stock price is shown to be a non-constant function unlike the assumption of the classical Black-Scholes model.

  3. How can cells sense the elasticity of a substrate? An analysis using a cell tensegrity model.

    PubMed

    De Santis, G; Lennon, A B; Boschetti, F; Verhegghe, B; Verdonck, P; Prendergast, P J

    2011-01-01

    A eukaryotic cell attaches and spreads on substrates, whether it is the extracellular matrix naturally produced by the cell itself, or artificial materials, such as tissue-engineered scaffolds. Attachment and spreading require the cell to apply forces in the nN range to the substrate via adhesion sites, and these forces are balanced by the elastic response of the substrate. This mechanical interaction is one determinant of cell morphology and, ultimately, cell phenotype. In this paper we use a finite element model of a cell, with a tensegrity structure to model the cytoskeleton of actin filaments and microtubules, to explore the way cells sense the stiffness of the substrate and thereby adapt to it. To support the computational results, an analytical 1D model is developed for comparison. We find that (i) the tensegrity hypothesis of the cytoskeleton is sufficient to explain the matrix-elasticity sensing, (ii) cell sensitivity is not constant but has a bell-shaped distribution over the physiological matrix-elasticity range, and (iii) the position of the sensitivity peak over the matrix-elasticity range depends on the cytoskeletal structure and in particular on the F-actin organisation. Our model suggests that F-actin reorganisation observed in mesenchymal stem cells (MSCs) in response to change of matrix elasticity is a structural-remodelling process that shifts the sensitivity peak towards the new value of matrix elasticity. This finding discloses a potential regulatory role of scaffold stiffness for cell differentiation. PMID:22048898

  4. Specimen-specific multi-scale model for the anisotropic elastic constants of human cortical bone

    PubMed Central

    Deuerling, Justin M.; Yue, Weimin; Espinoza Orías, Alejandro A.; Roeder, Ryan K.

    2009-01-01

    The anisotropic elastic constants of human cortical bone were predicted using a specimen-specific micromechanical model that accounted for structural parameters across multiple length scales. At the nano-scale, the elastic constants of the mineralized collagen fibril were estimated from measured volume fractions of the constituent phases, namely apatite crystals and Type I collagen. The elastic constants of the extracellular matrix (ECM) were predicted using the measured orientation distribution function (ODF) for the apatite crystals to average the contribution of misoriented mineralized collagen fibrils. Finally, the elastic constants of cortical bone tissue were determined by accounting for the measured volume fraction of Haversian porosity within the ECM. Model predictions using the measured apatite crystal ODF were not statistically different from experimental measurements for both the magnitude and anisotropy of elastic constants. In contrast, model predictions using common idealized assumptions of perfectly aligned or randomly oriented apatite crystals were significantly different from the experimental measurements. A sensitivity analysis indicated that the apatite crystal volume fraction and ODF were the most influential structural parameters affecting model predictions of the magnitude and anisotropy, respectively, of elastic constants. PMID:19664772

  5. Computational fluid dynamics modeling of airflow inside lungs using heterogenous anisotropic lung tissue elastic properties.

    PubMed

    Ilegbusi, Olusegun; Li, Ziang; Min, Yugang; Meeks, Sanford; Kupelian, Patrick; Santhanam, Anand P

    2012-01-01

    The aim of this paper is to model the airflow inside lungs during breathing and its fluid-structure interaction with the lung tissues and the lung tumor using subject-specific elastic properties. The fluid-structure interaction technique simultaneously simulates flow within the airway and anisotropic deformation of the lung lobes. The three-dimensional (3D) lung geometry is reconstructed from the end-expiration 3D CT scan datasets of humans with lung cancer. The lung is modeled as a poro-elastic medium with anisotropic elastic property (non-linear Young's modulus) obtained from inverse lung elastography of 4D CT scans for the same patients. The predicted results include the 3D anisotropic lung deformation along with the airflow pattern inside the lungs. The effect is also presented of anisotropic elasticity on both the spatio-temporal volumetric lung displacement and the regional lung hysteresis. PMID:22356987

  6. Substitution and price elasticity estimates using inter-countrypooled data in a translog cost model

    SciTech Connect

    Roy, Joyashree; Sanstad, Alan H.; Sathaye, Jayant A.; Khaddaria,Raman

    2006-06-01

    Pooled data across several developing countries and the U.S. were used to estimate long-run substitution and price elasticities ina translog framework for the paper, iron and steel, and aggregatemanufacturing industries. While the quality of the estimates variesacross the several industry-specific models, the results suggest highervalues for these elasticities than appear commonly used in integratedassessment models. Estimates of own-price elasticities of energy rangefrom - 0.80 to - 1.76 and are comparable to estimates from previouseconometric studies in the context of developed countries (- 0.77 to -0.87). Substitution elasticities show wider variation across countriesand industries. For energy and capital they range from -1.96 to 9.80, forlabor and energy from 2.61 to 7.11, and for energy and material from -0.26 to 2.07.

  7. Self-consistent modeling of visco-elastic polycrystals: Application to irradiation creep and growth

    NASA Astrophysics Data System (ADS)

    Turner, P. A.; Tomé, C. N.

    1993-07-01

    w EPRESENT a model that permits the simulation of the transient response of polycrystalline aggregates to externally imposed loads and temperature gradients. The mechanical response of the constitutive grains includes elastic, Newtonian (linearly viscous), thermal and growth terms. The formulation explicitly accounts for the anisotropy in the elastic, creep, thermal and growth properties of both grains and polycrystals, and describes the time evolution of the overall visco-elastic moduli and of the internal stresses. It also provides, as limit cases, the correct overall elastic, thermal, creep and growth moduli of the polycrystal. The model is applied to analyse the characteristics of irradiation creep and growth in reactor tubes subjected to hydrostatic pressure. The influence of texture, grain anisotropy, grain shape and thermal stresses over the predicted polycrystal response, and expecially over the transient regime, is analysed in detail.

  8. Phase field modeling of fracture in rubbery polymers. Part I: Finite elasticity coupled with brittle failure

    NASA Astrophysics Data System (ADS)

    Miehe, Christian; Schänzel, Lisa-Marie

    2014-04-01

    This work presents a new phase field model for rate-independent crack propagation in rubbery polymers at large strains and considers details of its numerical implementation. The approach accounts for micro-mechanically based features of both the elastic bulk response as well as the crack toughness of idealized polymer networks. The proposed diffusive crack modeling based on the introduction of a crack phase field overcomes difficulties associated with the computational realization of sharp crack discontinuities, in particular when it comes to complex crack topologies. The crack phase field governs a crack density function, which describes the macroscopic crack surface in the polymer per unit of the reference volume. It provides the basis for the constitutive modeling of a degrading free energy storage and a crack threshold function with a Griffith-type critical energy release rate, that governs the crack propagation in the polymer. Both the energy storage as well as the critical energy release due to fracture can be related to classical statistical network theories of polymers. The proposed framework of diffusive fracture in polymers is formulated in terms of a rate-type variational principle that determines the evolution of the coupled primary variable fields, i.e. the deformation field and the crack phase field. On the computational side, we outline a staggered solution procedure based on a one-pass operator split of the coupled equations, that successively updates in a typical time step the crack phase field and the displacement field. Such a solution algorithm is extremely robust, easy to implement and ideally suited for engineering problems. We finally demonstrate the performance of the phase field formulation of fracture at large strains by means of representative numerical examples.

  9. Data modeling of network dynamics

    NASA Astrophysics Data System (ADS)

    Jaenisch, Holger M.; Handley, James W.; Faucheux, Jeffery P.; Harris, Brad

    2004-01-01

    This paper highlights Data Modeling theory and its use for text data mining as a graphical network search engine. Data Modeling is then used to create a real-time filter capable of monitoring network traffic down to the port level for unusual dynamics and changes in business as usual. This is accomplished in an unsupervised fashion without a priori knowledge of abnormal characteristics. Two novel methods for converting streaming binary data into a form amenable to graphics based search and change detection are introduced. These techniques are then successfully applied to 1999 KDD Cup network attack data log-on sessions to demonstrate that Data Modeling can detect attacks without prior training on any form of attack behavior. Finally, two new methods for data encryption using these ideas are proposed.

  10. Modeling elastic momentum transfer cross-sections from mobility data

    NASA Astrophysics Data System (ADS)

    Nikitović, Ž. D.; Stojanović, V. D.; Raspopović, Z. M.

    2016-04-01

    In this letter we present a new method to simply obtain the elastic momentum transfer cross-section which predicts a maximum of reduced mobility and its sensitivity to the temperature variation at low energies. We first determined the transport cross-section which resembles mobility data for similar closed-shell systems by using the Monte Carlo method. Second, we selected the most probable reactive processes and compiled cross-sections from experimental and theoretical data. At the end, an elastic momentum transfer cross-section is obtained by subtracting the compiled cross-sections from the momentum transfer cross-section, taking into account the effects of the angular scattering distributions. Finally, the cross-section set determined in such a way is used as an input in a final Monte Carlo code run, to calculate the flux and bulk reduced mobility for Ne+ + CF4 which were discussed as functions of the reduced electric field E/N (N is the gas density) for the temperature T = 300 K.

  11. Ising model for distribution networks

    NASA Astrophysics Data System (ADS)

    Hooyberghs, H.; Van Lombeek, S.; Giuraniuc, C.; Van Schaeybroeck, B.; Indekeu, J. O.

    2012-01-01

    An elementary Ising spin model is proposed for demonstrating cascading failures (breakdowns, blackouts, collapses, avalanches, etc.) that can occur in realistic networks for distribution and delivery by suppliers to consumers. A ferromagnetic Hamiltonian with quenched random fields results from policies that maximize the gap between demand and delivery. Such policies can arise in a competitive market where firms artificially create new demand, or in a solidarity environment where too high a demand cannot reasonably be met. Network failure in the context of a policy of solidarity is possible when an initially active state becomes metastable and decays to a stable inactive state. We explore the characteristics of the demand and delivery, as well as the topological properties, which make the distribution network susceptible of failure. An effective temperature is defined, which governs the strength of the activity fluctuations which can induce a collapse. Numerical results, obtained by Monte Carlo simulations of the model on (mainly) scale-free networks, are supplemented with analytic mean-field approximations to the geometrical random field fluctuations and the thermal spin fluctuations. The role of hubs versus poorly connected nodes in initiating the breakdown of network activity is illustrated and related to model parameters.

  12. A microstructurally informed model for the mechanical response of three-dimensional actin networks

    PubMed Central

    KWON, R.Y.; LEW, A.J.; JACOBS, C.R.

    2008-01-01

    We propose a class of microstructurally informed models for the linear elastic mechanical behavior of cross-linked polymer networks such as the actin cytoskeleton. Salient features of the models include the possibility to represent anisotropic mechanical behavior resulting from anisotropic filament distributions, and a power-law scaling of the mechanical properties with the filament density. Mechanical models within the class are parameterized by seven different constants. We demonstrate a procedure for determining these constants using finite element models of three-dimensional actin networks. Actin filaments and cross-links were modeled as elastic rods, and the networks were constructed at physiological volume fractions and at the scale of an image voxel. We show the performance of the model in estimating the mechanical behavior of the networks over a wide range of filament densities and degrees of anisotropy. PMID:18568835

  13. Elastic block model for the Betic-Rif Arc from inversion of GPS data

    NASA Astrophysics Data System (ADS)

    Khazaradze, Giorgi; Asensio, Eva; Echeverria, Anna; McCaffrey, Robert

    2014-05-01

    This work provides an updated kinematic block model for the Betic-Rif region in western Mediterranean based on the compilation of the most recent GPS measurements. The study zone includes the tectonic plate boundary between the Nubia and Eurasia plates, where the exact boundary between the two plates is diffuse. The complexity of the plate boundary in the Betic-Rif arc is also evidenced by: i) broad spatial distribution of seismicity; ii) variety of focal mechanisms; iii) non-uniform crustal deformation field deduced from GPS observations. In this study we compiled the GPS results obtained from the Topo-Iberia CGPS network consisting of 25 CGPS sites (21 in Spain and 4 on Morocco) with the previously published GPS velocities from the region. The GPS velocities from various sources were transformed into a common Eurasia reference frame using the VELROT routine of the GAMIT/GLOBK software from MIT. The resulting GPS velocities were complemented with the seismic and geologic information. A kinematic model of the elastic blocks was obtained by the inversion of these data using the TDEFNODE software. Specifically, we used the GPS derived horizontal velocities, geologic fault slip rates, transform fault azimuths, and earthquake-derived fault slip vector azimuths to invert for block angular velocities, creep and locking on block-bounding faults, permanent strain rates within the blocks. Our preferred model includes 5 blocks, from which the 2 blocks represent the stable part of the Eurasia and Nubia plates. The 3 remaining blocks roughly represent the following 3 domains: 1) Rif mountains, straight of Gibraltar and western Alboran sea (RAWB block); internal zone of the eastern Betics (EBET block) and external zone of the eastern Betics and the eastern Alboran sea (block ESTE). Our modeling results show that the majority of the deformation is absorbed between the blocks EBET and RAWB, where the estimated slip rates reach 3.9 mm/yr, indicating mainly right-lateral motion

  14. Thermal Network Modelling Handbook

    NASA Technical Reports Server (NTRS)

    1972-01-01

    Thermal mathematical modelling is discussed in detail. A three-fold purpose was established: (1) to acquaint the new user with the terminology and concepts used in thermal mathematical modelling, (2) to present the more experienced and occasional user with quick formulas and methods for solving everyday problems, coupled with study cases which lend insight into the relationships that exist among the various solution techniques and parameters, and (3) to begin to catalog in an orderly fashion the common formulas which may be applied to automated conversational language techniques.

  15. Spatial Models for Virtual Networks

    NASA Astrophysics Data System (ADS)

    Janssen, Jeannette

    This paper discusses the use of spatial graph models for the analysis of networks that do not have a direct spatial reality, such as web graphs, on-line social networks, or citation graphs. In a spatial graph model, nodes are embedded in a metric space, and link formation depends on the relative position of nodes in the space. It is argued that spatial models form a good basis for link mining: assuming a spatial model, the link information can be used to infer the spatial position of the nodes, and this information can then be used for clustering and recognition of node similarity. This paper gives a survey of spatial graph models, and discusses their suitability for link mining.

  16. Performance evaluation of data center service localization based on virtual resource migration in software defined elastic optical network.

    PubMed

    Yang, Hui; Zhang, Jie; Ji, Yuefeng; Tan, Yuanlong; Lin, Yi; Han, Jianrui; Lee, Young

    2015-09-01

    Data center interconnection with elastic optical network is a promising scenario to meet the high burstiness and high-bandwidth requirements of data center services. In our previous work, we implemented cross stratum optimization of optical network and application stratums resources that allows to accommodate data center services. In view of this, this study extends the data center resources to user side to enhance the end-to-end quality of service. We propose a novel data center service localization (DCSL) architecture based on virtual resource migration in software defined elastic data center optical network. A migration evaluation scheme (MES) is introduced for DCSL based on the proposed architecture. The DCSL can enhance the responsiveness to the dynamic end-to-end data center demands, and effectively reduce the blocking probability to globally optimize optical network and application resources. The overall feasibility and efficiency of the proposed architecture are experimentally verified on the control plane of our OpenFlow-based enhanced SDN testbed. The performance of MES scheme under heavy traffic load scenario is also quantitatively evaluated based on DCSL architecture in terms of path blocking probability, provisioning latency and resource utilization, compared with other provisioning scheme. PMID:26368410

  17. Boundary conditions between poro-elastic medium and pure fluid in multi-scale modelling

    NASA Astrophysics Data System (ADS)

    Lacis, Ugis; Bagheri, Shervin

    2015-11-01

    Accurate modelling of porous and poro-elastic media has been a long standing issue in geophysics, fluid mechanics, and biology. There has been a notable development of continuous models for both porous and poro-elastic materials, nevertheless there is still an on-going debate about the modelling of effective boundary conditions between different types of media, such as, poro-elastic medium and free fluid, porous medium and solid wall. Some recent works have rigorously treated interface between porous medium and free fluid, however, there have been no detailed investigation regarding the interface between poro-elastic medium and free fluid. We use the multi-scale modelling to arrive with averaged, effective macroscopic equations for description of a poro-elastic medium. Then we investigate the interface in detail and arrive with effective boundary conditions. To validate our model, we construct direct numerical simulations using an immersed boundary (IB) method. The IB method is beforehand validated with respect to theoretical predictions for Darcy's flow in porous materials with a given pore structure.

  18. An Elastic-Plastic Damage Model for Long-Fiber Thermoplastics

    SciTech Connect

    Nguyen, Ba Nghiep; Kunc, Vlastimil

    2009-08-11

    This article proposes an elastic-plastic damage model that combines micromechanical modeling with continuum damage mechanics to predict the stress-strain response of injection-molded long-fiber thermoplastics. The model accounts for distributions of orientation and length of elastic fibers embedded in a thermoplastic matrix whose behavior is elastic-plastic and damageable. The elastic-plastic damage behavior of the matrix is described by the modified Ramberg-Osgood relation and the three-dimensional damage model in deformation assuming isotropic hardening. Fiber/matrix debonding is accounted for using a parameter that governs the fiber/matrix interface compliance. A linear relationship between this parameter and the matrix damage variable is assumed. First, the elastic-plastic damage behavior of the reference aligned-fiber composite containing the same fiber volume fraction and length distribution as the actual composite is computed using an incremental Eshelby-Mori-Tanaka mean field approach. The incremental response of the latter is then obtained from the solution for the aligned-fiber composite by averaging over all fiber orientations. The model is validated against the experimental stress-strain results obtained for long-glass-fiber/polypropylene specimens.

  19. An elastic-perfectly plastic flow model for finite element analysis of perforated materials

    SciTech Connect

    Jones, D.P.; Gordon, J.L.; Hutula, D.N.; Banas, D.; Newman, J.B.

    1999-02-01

    This paper describes the formulation of an elastic-perfectly plastic flow theory applicable to equivalent solid [EQS] modeling of perforated materials. An equilateral triangular array of circular penetrations is considered. The usual assumptions regarding geometry and loading conditions applicable to the development of elastic constants for EQS modeling of perforated plates are considered to apply here. An elastic-perfectly plastic [EPP] EQS model is developed for a collapse surface that includes fourth-order stress terms. The fourth order yield function has been shown to be appropriate for plates with a triangular array of circular holes. A complete flow model is formulated using the consistent tangent modulus approach based on the fourth order yield function.

  20. The impact of ice I rheology on interior models of Ganymede: The elastic vs. the visco-elastic case

    NASA Astrophysics Data System (ADS)

    Steinbrügge, Gregor; Hussmann, Hauke; Sohl, Frank; Oberst, Jürgen

    2015-04-01

    Many investigations on key processes of icy satellites are driven by the rheological behavior of planetary ices. Future missions to Jupiter's icy moons (e.g. JUICE / Europa clipper) aimed at constraining the thickness of the outer ice shell using radio science and/or laser altimetry will have to address this problem. We investigate for the case of Ganymede under which conditions the ice I viscosity could be constrained by measuring the phase-lag of the tidal response using laser altimetry. In the absence of seismic data, interior structure models are constrained by the satellite's mean density and mean moment-of-inertia factor. One key observable to reduce the ambiguity of the corresponding structural models is the measurement of the dynamic response of the satellite's outer ice shells to tidal forces exerted by Jupiter and characterized by the body tide surface Love numbers h2 and k2. The Love number k2 measures the variation of the gravitational potential due to tidally induced internal redistribution of mass and can be inferred from radio science experiments. The Love number h2 is a measure for the tide-induced radial displacement of the satellite's surface. It is an advantage that Ganymede's surface displacement Love number h2 can be expected to be measured with a high accuracy using laser altimetry (Steinbrügge et al., 2014). However, the determination of the resulting ice thickness further depends on the possible existence of a liquid subsurface water ocean and on the tidally effective rheology of the outer ice shell (Moore and Schubert, 2003). Here, we distinguish between an elastic, visco-elastic or even fluid behavior in the sense of the Maxwell model and alternative rheological models. In the case of Ganymede the fluid case would imply high ice temperatures which are at odds with thermal equilibrium models calculated by Spohn and Schubert (2003). However the visco-elastic case is still possible. Laboratory measurements of ice I (e.g. Sotin et al., 1998

  1. Polymer networks: Modeling and applications

    NASA Astrophysics Data System (ADS)

    Masoud, Hassan

    Polymer networks are an important class of materials that are ubiquitously found in natural, biological, and man-made systems. The complex mesoscale structure of these soft materials has made it difficult for researchers to fully explore their properties. In this dissertation, we introduce a coarse-grained computational model for permanently cross-linked polymer networks than can properly capture common properties of these materials. We use this model to study several practical problems involving dry and solvated networks. Specifically, we analyze the permeability and diffusivity of polymer networks under mechanical deformations, we examine the release of encapsulated solutes from microgel capsules during volume transitions, and we explore the complex tribological behavior of elastomers. Our simulations reveal that the network transport properties are defined by the network porosity and by the degree of network anisotropy due to mechanical deformations. In particular, the permeability of mechanically deformed networks can be predicted based on the alignment of network filaments that is characterized by a second order orientation tensor. Moreover, our numerical calculations demonstrate that responsive microcapsules can be effectively utilized for steady and pulsatile release of encapsulated solutes. We show that swollen gel capsules allow steady, diffusive release of nanoparticles and polymer chains, whereas gel deswelling causes burst-like discharge of solutes driven by an outward flow of the solvent initially enclosed within a shrinking capsule. We further demonstrate that this hydrodynamic release can be regulated by introducing rigid microscopic rods in the capsule interior. We also probe the effects of velocity, temperature, and normal load on the sliding of elastomers on smooth and corrugated substrates. Our friction simulations predict a bell-shaped curve for the dependence of the friction coefficient on the sliding velocity. Our simulations also illustrate

  2. New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach.

    PubMed

    Casañas, Arnau; Querol-Audí, Jordi; Guerra, Pablo; Pous, Joan; Tanaka, Hideaki; Tsukihara, Tomitake; Verdaguer, Nuria; Fita, Ignasi

    2013-06-01

    The vault particle, with a molecular weight of about 10 MDa, is the largest ribonucleoprotein that has been described. The X-ray structure of intact rat vault has been solved at a resolution of 3.5 Å [Tanaka et al. (2009), Science, 323, 384-388], showing an overall barrel-shaped architecture organized into two identical moieties, each consisting of 39 copies of the major vault protein (MVP). The model deposited in the PDB includes 39 MVP copies (half a vault) in the crystal asymmetric unit. A 2.1 Å resolution structure of the seven N-terminal repeats (R1-7) of MVP has also been determined [Querol-Audí et al. (2009), EMBO J. 28, 3450-3457], revealing important discrepancies with respect to the MVP models for repeats R1 and R2. Here, the re-refinement of the vault structure by incorporating the high-resolution information available for the R1-7 domains, using the deformable elastic network (DEN) approach and maintaining strict 39-fold noncrystallographic symmetry is reported. The new refinement indicates that at the resolution presently available the MVP shell can be described well as only one independent subunit organized with perfect D39 molecular symmetry. This refinement reveals that significant rearrangements occur in the N-terminus of MVP during the closing of the two vault halves and that the 39-fold symmetry breaks in the cap region. These results reflect the highly dynamic nature of the vault structure and represent a necessary step towards a better understanding of the biology and regulation of this particle. PMID:23695250

  3. Size-dependent elastic properties of crystalline polymers via a molecular mechanics model

    NASA Astrophysics Data System (ADS)

    Zhao, Junhua; Guo, Wanlin; Zhang, Zhiliang; Rabczuk, Timon

    2011-12-01

    An analytical molecular mechanics model is developed to obtain the size-dependent elastic properties of crystalline polyethylene. An effective "stick-spiral" model is adopted in the polymer chain. Explicit equations are derived from the Lennard-Jones potential function for the van der Waals force between any two polymer chains. By using the derived formulas, the nine size-dependent elastic constants are investigated systematically. The present analytical results are in reasonable agreement with those from present united-atom molecular dynamics simulations. The established analytical model provides an efficient route for mechanical characterization of crystalline polymers and related materials toward nanoelectromechanical applications.

  4. The design, analysis and experimental evaluation of an elastic model wing

    NASA Technical Reports Server (NTRS)

    Cavin, R. K., III; Thisayakorn, C.

    1974-01-01

    An elastic orbiter model was developed to evaluate the effectiveness of aeroelasticity computer programs. The elasticity properties were introduced by constructing beam-like straight wings for the wind tunnel model. A standard influence coefficient mathematical model was used to estimate aeroelastic effects analytically. In general good agreement was obtained between the empirical and analytical estimates of the deformed shape. However, in the static aeroelasticity case, it was found that the physical wing exhibited less bending and more twist than was predicted by theory.

  5. Shear-stress fluctuations in self-assembled transient elastic networks

    NASA Astrophysics Data System (ADS)

    Wittmer, J. P.; Kriuchevskyi, I.; Cavallo, A.; Xu, H.; Baschnagel, J.

    2016-06-01

    Focusing on shear-stress fluctuations, we investigate numerically a simple generic model for self-assembled transient networks formed by repulsive beads reversibly bridged by ideal springs. With Δ t being the sampling time and t(f ) ˜1 /f the Maxwell relaxation time (set by the spring recombination frequency f ), the dimensionless parameter Δ x =Δ t /t(f ) is systematically scanned from the liquid limit (Δ x ≫1 ) to the solid limit (Δ x ≪1 ) where the network topology is quenched and an ensemble average over m -independent configurations is required. Generalizing previous work on permanent networks, it is shown that the shear-stress relaxation modulus G (t ) may be efficiently determined for all Δ x using the simple-average expression G (t ) =μA-h (t ) with μA=G (0 ) characterizing the canonical-affine shear transformation of the system at t =0 and h (t ) the (rescaled) mean-square displacement of the instantaneous shear stress as a function of time t . This relation is compared to the standard expression G (t ) =c ˜(t ) using the (rescaled) shear-stress autocorrelation function c ˜(t ) . Lower bounds for the m configurations required by both relations are given.

  6. Shear-stress fluctuations in self-assembled transient elastic networks.

    PubMed

    Wittmer, J P; Kriuchevskyi, I; Cavallo, A; Xu, H; Baschnagel, J

    2016-06-01

    Focusing on shear-stress fluctuations, we investigate numerically a simple generic model for self-assembled transient networks formed by repulsive beads reversibly bridged by ideal springs. With Δt being the sampling time and t_{☆}(f)∼1/f the Maxwell relaxation time (set by the spring recombination frequency f), the dimensionless parameter Δx=Δt/t_{☆}(f) is systematically scanned from the liquid limit (Δx≫1) to the solid limit (Δx≪1) where the network topology is quenched and an ensemble average over m-independent configurations is required. Generalizing previous work on permanent networks, it is shown that the shear-stress relaxation modulus G(t) may be efficiently determined for all Δx using the simple-average expression G(t)=μ_{A}-h(t) with μ_{A}=G(0) characterizing the canonical-affine shear transformation of the system at t=0 and h(t) the (rescaled) mean-square displacement of the instantaneous shear stress as a function of time t. This relation is compared to the standard expression G(t)=c[over ̃](t) using the (rescaled) shear-stress autocorrelation function c[over ̃](t). Lower bounds for the m configurations required by both relations are given. PMID:27415324

  7. Elasticity analyses of size-based red and white abalone matrix models: management and conservation.

    PubMed

    Rogers-Bennett, Laura; Leaf, Robert T

    2006-02-01

    Prospective elasticity analyses have been used to aid in the management of fished species and the conservation of endangered species. Elasticities were examined for deterministic size-based matrix models of red abalone, Haliotis rufescens, and white abalone, H. sorenseni, to evaluate which size classes influenced population growth (lambda) the most. In the red abalone matrix, growth transitions were determined from a tag recapture study and grouped into nine size classes. In the white abalone matrix, abalone growth was determined from a laboratory study and grouped into five size classes. Survivorship was estimated from tag recapture data for red abalone using a Jolly-Seber model with size as a covariate and used for both red and white abalone. Reproduction estimates for both models used averages of the number of mature eggs produced by female red and white abalone in each size class from four-year reproduction studies. Population growth rate (lambda) was set to 1.0, and the first-year survival (larval survival through to the first size class) was estimated by iteration. Survival elasticities were higher than fecundity elasticities in both the red and white matrix models. The sizes classes with the greatest survival elasticities, and therefore the most influence on population growth in the model, were the sublegal red abalone (150-178 mm) and the largest white abalone size class (140-175 mm). For red abalone, the existing minimum legal size (178 mm) protects the size class the model suggests is critical to population growth. Implementation of education programs for novice divers coupled with renewed enforcement may serve to minimize incidental mortality of the critical size class. For white abalone, conservation efforts directed at restoring adults may have more of an impact on population growth than efforts focusing on juveniles. Our work is an example of how prospective elasticity analyses of size-structured matrix models can be used to quantitatively evaluate

  8. Bayesian Networks for Social Modeling

    SciTech Connect

    Whitney, Paul D.; White, Amanda M.; Walsh, Stephen J.; Dalton, Angela C.; Brothers, Alan J.

    2011-03-28

    This paper describes a body of work developed over the past five years. The work addresses the use of Bayesian network (BN) models for representing and predicting social/organizational behaviors. The topics covered include model construction, validation, and use. These topics show the bulk of the lifetime of such model, beginning with construction, moving to validation and other aspects of model ‘critiquing’, and finally demonstrating how the modeling approach might be used to inform policy analysis. To conclude, we discuss limitations of using BN for this activity and suggest remedies to address those limitations. The primary benefits of using a well-developed computational, mathematical, and statistical modeling structure, such as BN, are 1) there are significant computational, theoretical and capability bases on which to build 2) ability to empirically critique the model, and potentially evaluate competing models for a social/behavioral phenomena.

  9. Theoretical modeling for neutron elastic scattering angular distribution in the fast energy range

    SciTech Connect

    Kawano, Toshihiko

    2010-12-07

    One of the major issues of neutron scattering modeling in the fast energy range is the contribution of compound elastic and inelastic scattering to the total scattering process. The compound component may become large at very low energies where the angular distribution becomes 90-degree symmetric in the center-of-mass system. Together with the shape elastic component, the elastic scattering gives slightly forward-peaked angular distributions in the fast energy range. This anisotropic angular distribution gives high sensitivities to many important nuclear reactor characteristics, such as criticality and neutron shielding. In this talk we describe how the anisotropic angular distributions are calculated within the statistical model framework, including the case where strongly coupled channels exist, by combining the coupled-channels theory with the Hauser-Feshbach model. This unique capability extension will have significant advantages in understanding the neutron scattering process for deformed nuclei, like uranium or plutonium, on which advanced nuclear energy applications center.

  10. Composite model for the anisotropic elastic moduli of lean oil shale

    SciTech Connect

    Rundle, J.B.; Schuler, K.W.

    1981-02-01

    A model to predict the anisotropic elastic moduli of lean oil shale is formulated. Deformation of a homogeneous ellipsoidal inclusion in a host matrix is used as the basis for computing the deformation of the composite. Both inclusions and the host rock are presumed to be separately isotropic. Anisotropy of the composite arises from the nonspherical shape of the kerogen inclusions. Six parameters are needed to quantify the model fully: 2 elastic moduli for the host rock, 2 for the inclusions, the kerogen content, and the inclusion aspect ratio. The model is compared to a set of statically measured elastic moduli. Good agreement with lean oil shale data was found. However, some systematic differences appear in comparison with moduli measured ultrasonically. 20 references.

  11. On the influence of model parametrization in elastic full waveform tomography

    NASA Astrophysics Data System (ADS)

    Köhn, D.; De Nil, D.; Kurzmann, A.; Przebindowska, A.; Bohlen, T.

    2012-10-01

    Elastic Full Waveform Tomography (FWT) aims to reduce the misfit between recorded and modelled data, to deduce a very detailed model of elastic material parameters in the underground. The choice of the elastic model parameters to be inverted affects the convergence and quality of the reconstructed subsurface model. Using the Cross-Triangle-Squares (CTS) model three elastic parametrizations, Lamé parameters m1 = [λ, μ, ρ], seismic velocities m2 = [Vp, Vs, ρ] and seismic impedances m3 = [Ip, Is, ρ] for far-offset reflection seismic acquisition geometries with explosive point sources and free-surface condition are studied. In each CTS model the three elastic parameters are assigned to three different geometrical objects that are spatially separated. The results of the CTS model study reveal a strong requirement of a sequential frequency inversion from low to high frequencies to reconstruct the density model. Using only high-frequency data, cross-talk artefacts have an influence on the quantitative reconstruction of the material parameters, while for a sequential frequency inversion only structural artefacts, representing the boundaries of different model parameters, are present. During the inversion, the Lamé parameters, seismic velocities and impedances could be reconstructed well. However, using the Lamé parametrization ?-artefacts are present in the λ model, while similar artefacts are suppressed when using seismic velocities or impedances. The density inversion shows the largest ambiguity for all parametrizations. However, the artefacts are again more dominant, when using the Lamé parameters and suppressed for seismic velocity and impedance parametrization. The afore mentioned results are confirmed for a geologically more realistic modified Marmousi-II model. Using a conventional streamer acquisition geometry the P-velocity, S-velocity and density models of the subsurface were reconstructed successfully and are compared with the results of the Lam

  12. Stochastic reduced order computational model of structures having numerous local elastic modes in low frequency dynamics

    NASA Astrophysics Data System (ADS)

    Arnoux, A.; Batou, A.; Soize, C.; Gagliardini, L.

    2013-08-01

    This paper is devoted to the construction of a stochastic reduced order computational model of structures having numerous local elastic modes in low frequency dynamics. We are particularly interested in automotive vehicles which are made up of stiff parts and flexible components. This type of structure is characterized by the fact that it exhibits, in the low frequency range, not only the classical global elastic modes but also numerous local elastic modes which cannot easily be separated from the global elastic modes. To solve this difficult problem, an innovative method has recently been proposed for constructing a reduced order computational dynamical model adapted to this particular situation for the low frequency range. Then a new adapted generalized eigenvalue problem is introduced and allows a global vector basis to be constructed for the global displacements space. This method requires to decompose the domain of the structure into sub-domains. Such a decomposition is carried out using the Fast Marching Method. This global vector basis is then used to construct the reduced order computational model. Since there are model uncertainties induced by modeling errors in the computational model, the nonparametric probabilistic approach of uncertainties is used and implemented in the reduced order computational model. The methodology is applied to a complex computational model of an automotive vehicle.

  13. Tuition Elasticity of the Demand for Higher Education among Current Students: A Pricing Model.

    ERIC Educational Resources Information Center

    Bryan, Glenn A.; Whipple, Thomas W.

    1995-01-01

    A pricing model is offered, based on retention of current students, that colleges can use to determine appropriate tuition. A computer-based model that quantifies the relationship between tuition elasticity and projected net return to the college was developed and applied to determine an appropriate tuition rate for a small, private liberal arts…

  14. Elastic pp Scattering at LHC Energies in Various Multi-Pomeron Exchange Models

    NASA Astrophysics Data System (ADS)

    Novikov, Ivan; Shabelski, Yuli

    2012-10-01

    We consider the data for elastic pp scattering in the framework of Regge theory in various models of multiple Pomeron exchanges: quasi-eikonal approach and two-channel approach. The results of the model calculations are compared with the experimental data presented by the TOTEM collaboration.

  15. A random interacting network model for complex networks

    NASA Astrophysics Data System (ADS)

    Goswami, Bedartha; Shekatkar, Snehal M.; Rheinwalt, Aljoscha; Ambika, G.; Kurths, Jürgen

    2015-12-01

    We propose a RAndom Interacting Network (RAIN) model to study the interactions between a pair of complex networks. The model involves two major steps: (i) the selection of a pair of nodes, one from each network, based on intra-network node-based characteristics, and (ii) the placement of a link between selected nodes based on the similarity of their relative importance in their respective networks. Node selection is based on a selection fitness function and node linkage is based on a linkage probability defined on the linkage scores of nodes. The model allows us to relate within-network characteristics to between-network structure. We apply the model to the interaction between the USA and Schengen airline transportation networks (ATNs). Our results indicate that two mechanisms: degree-based preferential node selection and degree-assortative link placement are necessary to replicate the observed inter-network degree distributions as well as the observed inter-network assortativity. The RAIN model offers the possibility to test multiple hypotheses regarding the mechanisms underlying network interactions. It can also incorporate complex interaction topologies. Furthermore, the framework of the RAIN model is general and can be potentially adapted to various real-world complex systems.

  16. A random interacting network model for complex networks

    PubMed Central

    Goswami, Bedartha; Shekatkar, Snehal M.; Rheinwalt, Aljoscha; Ambika, G.; Kurths, Jürgen

    2015-01-01

    We propose a RAndom Interacting Network (RAIN) model to study the interactions between a pair of complex networks. The model involves two major steps: (i) the selection of a pair of nodes, one from each network, based on intra-network node-based characteristics, and (ii) the placement of a link between selected nodes based on the similarity of their relative importance in their respective networks. Node selection is based on a selection fitness function and node linkage is based on a linkage probability defined on the linkage scores of nodes. The model allows us to relate within-network characteristics to between-network structure. We apply the model to the interaction between the USA and Schengen airline transportation networks (ATNs). Our results indicate that two mechanisms: degree-based preferential node selection and degree-assortative link placement are necessary to replicate the observed inter-network degree distributions as well as the observed inter-network assortativity. The RAIN model offers the possibility to test multiple hypotheses regarding the mechanisms underlying network interactions. It can also incorporate complex interaction topologies. Furthermore, the framework of the RAIN model is general and can be potentially adapted to various real-world complex systems. PMID:26657032

  17. A random interacting network model for complex networks.

    PubMed

    Goswami, Bedartha; Shekatkar, Snehal M; Rheinwalt, Aljoscha; Ambika, G; Kurths, Jürgen

    2015-01-01

    We propose a RAndom Interacting Network (RAIN) model to study the interactions between a pair of complex networks. The model involves two major steps: (i) the selection of a pair of nodes, one from each network, based on intra-network node-based characteristics, and (ii) the placement of a link between selected nodes based on the similarity of their relative importance in their respective networks. Node selection is based on a selection fitness function and node linkage is based on a linkage probability defined on the linkage scores of nodes. The model allows us to relate within-network characteristics to between-network structure. We apply the model to the interaction between the USA and Schengen airline transportation networks (ATNs). Our results indicate that two mechanisms: degree-based preferential node selection and degree-assortative link placement are necessary to replicate the observed inter-network degree distributions as well as the observed inter-network assortativity. The RAIN model offers the possibility to test multiple hypotheses regarding the mechanisms underlying network interactions. It can also incorporate complex interaction topologies. Furthermore, the framework of the RAIN model is general and can be potentially adapted to various real-world complex systems. PMID:26657032

  18. Research on the model of home networking

    NASA Astrophysics Data System (ADS)

    Yun, Xiang; Feng, Xiancheng

    2007-11-01

    It is the research hotspot of current broadband network to combine voice service, data service and broadband audio-video service by IP protocol to transport various real time and mutual services to terminal users (home). Home Networking is a new kind of network and application technology which can provide various services. Home networking is called as Digital Home Network. It means that PC, home entertainment equipment, home appliances, Home wirings, security, illumination system were communicated with each other by some composing network technology, constitute a networking internal home, and connect with WAN by home gateway. It is a new network technology and application technology, and can provide many kinds of services inside home or between homes. Currently, home networking can be divided into three kinds: Information equipment, Home appliances, Communication equipment. Equipment inside home networking can exchange information with outer networking by home gateway, this information communication is bidirectional, user can get information and service which provided by public networking by using home networking internal equipment through home gateway connecting public network, meantime, also can get information and resource to control the internal equipment which provided by home networking internal equipment. Based on the general network model of home networking, there are four functional entities inside home networking: HA, HB, HC, and HD. (1) HA (Home Access) - home networking connects function entity; (2) HB (Home Bridge) Home networking bridge connects function entity; (3) HC (Home Client) - Home networking client function entity; (4) HD (Home Device) - decoder function entity. There are many physical ways to implement four function entities. Based on theses four functional entities, there are reference model of physical layer, reference model of link layer, reference model of IP layer and application reference model of high layer. In the future home network

  19. Elastic epsilon/sup + -/-He scattering with the use of the model-potential method

    SciTech Connect

    Khan, P.; Datta, S.K.; Bhattacharyya, D.; Ghosh, A.S.

    1984-06-01

    A model-potential method has been used to evaluate the elastic e/sup + -/-He scattering at the low-incident energies. The potential contains one parameter to include the effect of short-range correlation. The results for the elastic e/sup + -/-He scattering have been obtained using the same parameter. Two model exchange potentials, one for s wave and the other for higher partial waves, have been employed. The present results are in good agreement with the measured values and refined theoretical predictions.

  20. The permeability and elastic moduli of tuff from Campi Flegrei, Italy: implications for ground deformation modelling

    NASA Astrophysics Data System (ADS)

    Heap, M. J.; Baud, P.; Meredith, P. G.; Vinciguerra, S.; Reuschlé, T.

    2014-01-01

    The accuracy of ground deformation modelling at active volcanoes is a principal requirement in volcanic hazard mitigation. However, the reliability of such models relies on the accuracy of the rock physical property (permeability and elastic moduli) input parameters. Unfortunately, laboratory-derived values on representative rocks are usually rare. To this end we have performed a systematic laboratory study on the influence of pressure and temperature on the permeability and elastic moduli of samples from the two most widespread lithified pyroclastic deposits at the Campi Flegrei volcanic district, Italy. Our data show that the water permeability of Neapolitan Yellow Tuff and a tuff from the Campanian Ignimbrite differ by about 1.5 orders of magnitude. As pressure (depth) increases beyond the critical point for inelastic pore collapse (at an effective pressure of 10-15 MPa, or a depth of about 750 m), permeability and porosity decrease significantly, and ultrasonic wave velocities and dynamic elastic moduli increase significantly. Increasing the thermal stressing temperature increases the permeability and decreases the ultrasonic wave velocities and dynamic elastic moduli of the Neapolitan Yellow Tuff; whereas the tuff from the Campanian Ignimbrite remains unaffected. This difference is due to the presence of thermally unstable zeolites within the Neapolitan Yellow Tuff. For both rocks we also find, under the same pressure conditions, that the dynamic (calculated from ultrasonic wave velocities) and static (calculated from triaxial stress-strain data) elastic moduli differ significantly. The choice of elastic moduli in ground deformation modelling is therefore an important consideration. While we urge that these new laboratory data should be considered in routine ground deformation modelling, we highlight the challenges for ground deformation modelling based on the heterogeneous nature (vertically and laterally) of the rocks that comprise the caldera at Campi

  1. Quantitative Modeling of Coupled Piezo-Elastodynamic Behavior of Piezoelectric Actuators Bonded to an Elastic Medium for Structural Health Monitoring: A Review

    PubMed Central

    Huang, Guoliang; Song, Fei; Wang, Xiaodong

    2010-01-01

    Elastic waves, especially guided waves, generated by a piezoelectric actuator/sensor network, have shown great potential for on-line health monitoring of advanced aerospace, nuclear, and automotive structures in recent decades. Piezoelectric materials can function as both actuators and sensors in these applications due to wide bandwidth, quick response and low costs. One of the most fundamental issues surrounding the effective use of piezoelectric actuators is the quantitative evaluation of the resulting elastic wave propagation by considering the coupled piezo-elastodynamic behavior between the actuator and the host medium. Accurate characterization of the local interfacial stress distribution between the actuator and the host medium is the key issue for the problem. This paper presents a review of the development of analytical, numerical and hybrid approaches for modeling of the coupled piezo-elastodynamic behavior. The resulting elastic wave propagation for structural health monitoring is also summarized. PMID:22319319

  2. Fictitious Domain Methods for Fracture Models in Elasticity.

    NASA Astrophysics Data System (ADS)

    Court, S.; Bodart, O.; Cayol, V.; Koko, J.

    2014-12-01

    As surface displacements depend non linearly on sources location and shape, simplifying assumptions are generally required to reduce computation time when inverting geodetic data. We present a generic Finite Element Method designed for pressurized or sheared cracks inside a linear elastic medium. A fictitious domain method is used to take the crack into account independently of the mesh. Besides the possibility of considering heterogeneous media, the approach permits the evolution of the crack through time or more generally through iterations: The goal is to change the less things we need when the crack geometry is modified; In particular no re-meshing is required (the boundary conditions at the level of the crack are imposed by Lagrange multipliers), leading to a gain of computation time and resources with respect to classic finite element methods. This method is also robust with respect to the geometry, since we expect to observe the same behavior whatever the shape and the position of the crack. We present numerical experiments which highlight the accuracy of our method (using convergence curves), the optimality of errors, and the robustness with respect to the geometry (with computation of errors on some quantities for all kind of geometric configurations). We will also provide 2D benchmark tests. The method is then applied to Piton de la Fournaise volcano, considering a pressurized crack - inside a 3-dimensional domain - and the corresponding computation time and accuracy are compared with results from a mixed Boundary element method. In order to determine the crack geometrical characteristics, and pressure, inversions are performed combining fictitious domain computations with a near neighborhood algorithm. Performances are compared with those obtained combining a mixed boundary element method with the same inversion algorithm.

  3. From Process Modeling to Elastic Property Prediction for Long-Fiber Injection-Molded Thermoplastics

    SciTech Connect

    Nguyen, Ba Nghiep; Kunc, Vlastimil; Frame, Barbara J.; Phelps, Jay; Tucker III, Charles L.; Bapanapalli, Satish K.; Holbery, James D.; Smith, Mark T.

    2007-09-13

    This paper presents an experimental-modeling approach to predict the elastic properties of long-fiber injection-molded thermoplastics (LFTs). The approach accounts for fiber length and orientation distributions in LFTs. LFT samples were injection-molded for the study, and fiber length and orientation distributions were measured at different locations for use in the computation of the composite properties. The current fiber orientation model was assessed to determine its capability to predict fiber orientation in LFTs. Predicted fiber orientations for the studied LFT samples were also used in the calculation of the elastic properties of these samples, and the predicted overall moduli were then compared with the experimental results. The elastic property prediction was based on the Eshelby-Mori-Tanaka method combined with the orientation averaging technique. The predictions reasonably agree with the experimental LFT data

  4. Probabilistic logic modeling of network reliability for hybrid network architectures

    SciTech Connect

    Wyss, G.D.; Schriner, H.K.; Gaylor, T.R.

    1996-10-01

    Sandia National Laboratories has found that the reliability and failure modes of current-generation network technologies can be effectively modeled using fault tree-based probabilistic logic modeling (PLM) techniques. We have developed fault tree models that include various hierarchical networking technologies and classes of components interconnected in a wide variety of typical and atypical configurations. In this paper we discuss the types of results that can be obtained from PLMs and why these results are of great practical value to network designers and analysts. After providing some mathematical background, we describe the `plug-and-play` fault tree analysis methodology that we have developed for modeling connectivity and the provision of network services in several current- generation network architectures. Finally, we demonstrate the flexibility of the method by modeling the reliability of a hybrid example network that contains several interconnected ethernet, FDDI, and token ring segments. 11 refs., 3 figs., 1 tab.

  5. Low-Dimensional Generalized Coordinate Models of Large-Deformation Elastic Joints

    NASA Astrophysics Data System (ADS)

    Odhner, Lael; Dollar, Aaron

    2012-02-01

    In the field of robotics, it is increasingly common to use elastic elements such as rods, beams or sheets to allow motion between the rigid links of a robot, rather than conventional sliding mechanisms such as pin joints. Although these elastic joints are simpler to manufacture, especially at meso- and micro-scales, representational simplicity is sacrificed. It is far easier to compute the Lagrangian of a robot using joint angles as generalized coordinates, rather than by considering the large-deformation continuum behavior of elastic joints. In this talk, we will discuss our work toward finding accurate, low-dimensional discretizations of elastic joint mechanics, suitable for use in generalized coordinate models of robot kinematics and dynamics. We use modally parameterized backbone curves to describe the kinematic configuration of the elastic joints, and compute the energy associated with deformation using rod and shell theory. In the plane, only three smooth deformation modes are sufficient to describe Euler-Bernoulli bending of 90 degrees to within 1 percent. Parametric models for the three-dimensional motion of sheet hinges are more complex, but can be simplified significantly using boundary conditions and constraints imposed by ruled surface assumptions.

  6. A general one-dimension nonlinear magneto-elastic coupled constitutive model for magnetostrictive materials

    SciTech Connect

    Zhang, Da-Guang; Li, Meng-Han; Zhou, Hao-Miao

    2015-10-15

    For magnetostrictive rods under combined axial pre-stress and magnetic field, a general one-dimension nonlinear magneto-elastic coupled constitutive model was built in this paper. First, the elastic Gibbs free energy was expanded into polynomial, and the relationship between stress and strain and the relationship between magnetization and magnetic field with the polynomial form were obtained with the help of thermodynamic relations. Then according to microscopic magneto-elastic coupling mechanism and some physical facts of magnetostrictive materials, a nonlinear magneto-elastic constitutive with concise form was obtained when the relations of nonlinear strain and magnetization in the polynomial constitutive were instead with transcendental functions. The comparisons between the prediction and the experimental data of different magnetostrictive materials, such as Terfenol-D, Metglas and Ni showed that the predicted magnetostrictive strain and magnetization curves were consistent with experimental results under different pre-stresses whether in the region of low and moderate field or high field. Moreover, the model can fully reflect the nonlinear magneto-mechanical coupling characteristics between magnetic, magnetostriction and elasticity, and it can effectively predict the changes of material parameters with pre-stress and bias field, which is useful in practical applications.

  7. Plant Growth Models Using Artificial Neural Networks

    NASA Technical Reports Server (NTRS)

    Bubenheim, David

    1997-01-01

    In this paper, we descrive our motivation and approach to devloping models and the neural network architecture. Initial use of the artificial neural network for modeling the single plant process of transpiration is presented.

  8. To what extent can cortical bone millimeter-scale elasticity be predicted by a two-phase composite model with variable porosity?

    PubMed

    Granke, Mathilde; Grimal, Quentin; Parnell, William J; Raum, Kay; Gerisch, Alf; Peyrin, Françoise; Saïed, Amena; Laugier, Pascal

    2015-01-01

    An evidence gap exists in fully understanding and reliably modeling the variations in elastic anisotropy that are observed at the millimeter scale in human cortical bone. The porosity (pore volume fraction) is known to account for a large part, but not all, of the elasticity variations. This effect may be modeled by a two-phase micromechanical model consisting of a homogeneous matrix pervaded by cylindrical pores. Although this model has been widely used, it lacks experimental validation. The aim of the present work is to revisit experimental data (elastic coefficients, porosity) previously obtained from 21 cortical bone specimens from the femoral mid-diaphysis of 10 donors and test the validity of the model by proposing a detailed discussion of its hypotheses. This includes investigating to what extent the experimental uncertainties, pore network modeling, and matrix elastic properties influence the model's predictions. The results support the validity of the two-phase model of cortical bone which assumes that the essential source of variations of elastic properties at the millimeter-scale is the volume fraction of vascular porosity. We propose that the bulk of the remaining discrepancies between predicted stiffness coefficients and experimental data (RMSE between 6% and 9%) is in part due to experimental errors and part due to small variations of the extravascular matrix properties. More significantly, although most of the models that have been proposed for cortical bone were based on several homogenization steps and a large number of variable parameters, we show that a model with a single parameter, namely the volume fraction of vascular porosity, is a suitable representation for cortical bone. The results could provide a guide to build specimen-specific cortical bone models. This will be of interest to analyze the structure-function relationship in bone and to design bone-mimicking materials. PMID:25462527

  9. Elastic Properties of Human Osteon and Osteonal Lamella Computed by a Bidirectional Micromechanical Model and Validated by Nanoindentation.

    PubMed

    Korsa, Radim; Lukes, Jaroslav; Sepitka, Josef; Mares, Tomas

    2015-08-01

    Knowledge of the anisotropic elastic properties of osteon and osteonal lamellae provides a better understanding of various pathophysiological conditions, such as aging, osteoporosis, osteoarthritis, and other degenerative diseases. For this reason, it is important to investigate and understand the elasticity of cortical bone. We created a bidirectional micromechanical model based on inverse homogenization for predicting the elastic properties of osteon and osteonal lamellae of cortical bone. The shape, the dimensions, and the curvature of osteon and osteonal lamellae are described by appropriately chosen curvilinear coordinate systems, so that the model operates close to the real morphology of these bone components. The model was used to calculate nine orthotropic elastic constants of osteonal lamellae. The input values have the elastic properties of a single osteon. We also expressed the dependence of the elastic properties of the lamellae on the angle of orientation. To validate the model, we performed nanoindentation tests on several osteonal lamellae. We compared the experimental results with the calculated results, and there was good agreement between them. The inverted model was used to calculate the elastic properties of a single osteon, where the input values are the elastic constants of osteonal lamellae. These calculations reveal that the model can be used in both directions of homogenization, i.e., direct homogenization and also inverse homogenization. The model described here can provide either the unknown elastic properties of a single lamella from the known elastic properties at the level of a single osteon, or the unknown elastic properties of a single osteon from the known elastic properties at the level of a single lamella. PMID:25901781

  10. Modeling the Dynamics of Compromised Networks

    SciTech Connect

    Soper, B; Merl, D M

    2011-09-12

    Accurate predictive models of compromised networks would contribute greatly to improving the effectiveness and efficiency of the detection and control of network attacks. Compartmental epidemiological models have been applied to modeling attack vectors such as viruses and worms. We extend the application of these models to capture a wider class of dynamics applicable to cyber security. By making basic assumptions regarding network topology we use multi-group epidemiological models and reaction rate kinetics to model the stochastic evolution of a compromised network. The Gillespie Algorithm is used to run simulations under a worst case scenario in which the intruder follows the basic connection rates of network traffic as a method of obfuscation.

  11. Uncoupling shear and uniaxial elastic moduli of semiflexible biopolymer networks: compression-softening and stretch-stiffening

    PubMed Central

    van Oosten, Anne S. G.; Vahabi, Mahsa; Licup, Albert J.; Sharma, Abhinav; Galie, Peter A.; MacKintosh, Fred C.; Janmey, Paul A.

    2016-01-01

    Gels formed by semiflexible filaments such as most biopolymers exhibit non-linear behavior in their response to shear deformation, e.g., with a pronounced strain stiffening and negative normal stress. These negative normal stresses suggest that networks would collapse axially when subject to shear stress. This coupling of axial and shear deformations can have particularly important consequences for extracellular matrices and collagenous tissues. Although measurements of uniaxial moduli have been made on biopolymer gels, these have not directly been related to the shear response. Here, we report measurements and simulations of axial and shear stresses exerted by a range of hydrogels subjected to simultaneous uniaxial and shear strains. These studies show that, in contrast to volume-conserving linearly elastic hydrogels, the Young’s moduli of networks formed by the biopolymers are not proportional to their shear moduli and both shear and uniaxial moduli are strongly affected by even modest degrees of uniaxial strain. PMID:26758452

  12. Uncoupling shear and uniaxial elastic moduli of semiflexible biopolymer networks: compression-softening and stretch-stiffening

    NASA Astrophysics Data System (ADS)

    van Oosten, Anne S. G.; Vahabi, Mahsa; Licup, Albert J.; Sharma, Abhinav; Galie, Peter A.; Mackintosh, Fred C.; Janmey, Paul A.

    2016-01-01

    Gels formed by semiflexible filaments such as most biopolymers exhibit non-linear behavior in their response to shear deformation, e.g., with a pronounced strain stiffening and negative normal stress. These negative normal stresses suggest that networks would collapse axially when subject to shear stress. This coupling of axial and shear deformations can have particularly important consequences for extracellular matrices and collagenous tissues. Although measurements of uniaxial moduli have been made on biopolymer gels, these have not directly been related to the shear response. Here, we report measurements and simulations of axial and shear stresses exerted by a range of hydrogels subjected to simultaneous uniaxial and shear strains. These studies show that, in contrast to volume-conserving linearly elastic hydrogels, the Young’s moduli of networks formed by the biopolymers are not proportional to their shear moduli and both shear and uniaxial moduli are strongly affected by even modest degrees of uniaxial strain.

  13. Conductive network formation of carbon nanotubes in elastic polymer microfibers and its effect on the electrical conductance: Experiment and simulation

    NASA Astrophysics Data System (ADS)

    Cho, Hyun Woo; Kim, Sang Won; Kim, Jeongmin; Kim, Un Jeong; Im, Kyuhyun; Park, Jong-Jin; Sung, Bong June

    2016-05-01

    We investigate how the electrical conductance of microfibers (made of polymers and conductive nanofillers) decreases upon uniaxial deformation by performing both experiments and simulations. Even though various elastic conductors have been developed due to promising applications for deformable electronic devices, the mechanism at a molecular level for electrical conductance change has remained elusive. Previous studies proposed that the decrease in electrical conductance would result from changes in either distances or contact numbers between conductive fillers. In this work, we prepare microfibers of single walled carbon nanotubes (SWCNTs)/polyvinyl alcohol composites and investigate the electrical conductance and the orientation of SWCNTs upon uniaxial deformation. We also perform extensive Monte Carlo simulations, which reproduce experimental results for the relative decrease in conductance and the SWCNTs orientation. We investigate the electrical networks of SWCNTs in microfibers and find that the decrease in the electrical conductance upon uniaxial deformation should be attributed to a subtle change in the topological structure of the electrical network.

  14. Conductive network formation of carbon nanotubes in elastic polymer microfibers and its effect on the electrical conductance: Experiment and simulation.

    PubMed

    Cho, Hyun Woo; Kim, Sang Won; Kim, Jeongmin; Kim, Un Jeong; Im, Kyuhyun; Park, Jong-Jin; Sung, Bong June

    2016-05-21

    We investigate how the electrical conductance of microfibers (made of polymers and conductive nanofillers) decreases upon uniaxial deformation by performing both experiments and simulations. Even though various elastic conductors have been developed due to promising applications for deformable electronic devices, the mechanism at a molecular level for electrical conductance change has remained elusive. Previous studies proposed that the decrease in electrical conductance would result from changes in either distances or contact numbers between conductive fillers. In this work, we prepare microfibers of single walled carbon nanotubes (SWCNTs)/polyvinyl alcohol composites and investigate the electrical conductance and the orientation of SWCNTs upon uniaxial deformation. We also perform extensive Monte Carlo simulations, which reproduce experimental results for the relative decrease in conductance and the SWCNTs orientation. We investigate the electrical networks of SWCNTs in microfibers and find that the decrease in the electrical conductance upon uniaxial deformation should be attributed to a subtle change in the topological structure of the electrical network. PMID:27208970

  15. Computer simulation of model cohesive powders: Plastic consolidation, structural changes, and elasticity under isotropic loads

    NASA Astrophysics Data System (ADS)

    Gilabert, F. A.; Roux, J.-N.; Castellanos, A.

    2008-09-01

    The quasistatic behavior of a simple two-dimensional model of a cohesive powder under isotropic loads is investigated by discrete element simulations. We ignore contact plasticity and focus on the effect of geometry and collective rearrangements on the material behavior. The loose packing states, as assembled and characterized in a previous numerical study [Gilabert, Roux, and Castellanos, Phys. Rev. E 75, 011303 (2007)], are observed, under growing confining pressure P , to undergo important structural changes, while solid fraction Φ irreversibly increases (typically, from 0.4-0.5 to 0.75-0.8). The system state goes through three stages, with different forms of the plastic consolidation curve, i.e., Φ as a function of the growing reduced pressure P*=Pa/F0 , defined with adhesion force F0 and grain diameter a . In the low-confinement regime (I), the system undergoes negligible plastic compaction, and its structure is influenced by the assembling process. In regime II the material state is independent of initial conditions, and the void ratio varies linearly with lnP [i.e., Δ(1/Φ)=λΔ(lnP*) ], as described in the engineering literature. Plasticity index λ is reduced in the presence of a small rolling resistance (RR). In the last stage of compaction (III), Φ approaches an asymptotic, maximum solid fraction Φmax , as a power law Φmax-Φ∝(P*)-α , with α≃1 , and properties of cohesionless granular packs are gradually retrieved. Under consolidation, while the range ξ of fractal density correlations decreases, force patterns reorganize from self-balanced clusters to force chains, with correlative evolutions of force distributions, and elastic moduli increase by a large amount. Plastic deformation events correspond to very small changes in the network topology, while the denser regions tend to move like rigid bodies. Elastic properties are dominated by the bending of thin junctions in loose systems. For growing RR those tend to form particle chains, the

  16. An engineering model for yield inception in slip-stick elastic contacts

    NASA Astrophysics Data System (ADS)

    Spinu, S.; Gradinaru, D.

    2015-11-01

    The failure of the mechanical contact due to plastic yielding is generally predicted employing stress analysis coupled with the von Mises yield criterion, which uses the maximum of the second deviatoric stress invariant as a threshold value. This paper aims to establish the relation between the frictional regime and the normal and tangential loading components which lead to yield inception in the slip-stick spherical contact between similarly elastic materials. The Boussinesq and Cerruti fundamental solutions for the elastic half-space are used in a robust semi-analytical method based on the superposition principle applicable in the frame of linear elasticity, and enhanced with an acceleration technique derived from the convolution theorem. A rapid algorithm for accurate computation of elastic stresses induced in subsurface by a known but arbitrary distribution of surface tractions, normal or shear, is advanced. The obtained data is normalized to allow model extension to any elastic constants or contact curvature, and curve fitting is employed to derive simple empirical formulas pertinent to practical engineering applications.

  17. Simple Elasticity Modeling and Failure Prediction for Composite Flexbeams

    NASA Technical Reports Server (NTRS)

    Makeev, Andrew; Armanios, Erian; OBrien, T. Kevin (Technical Monitor)

    2001-01-01

    A simple 2D boundary element analysis, suitable for developing cost effective models for tapered composite laminates, is presented. Constant stress and displacement elements are used. Closed-form fundamental solutions are derived. Numerical results are provided for several configurations to illustrate the accuracy of the model.

  18. Nonlinear Visco-Elastic Response of Composites via Micro-Mechanical Models

    NASA Technical Reports Server (NTRS)

    Gates, Thomas S.; Sridharan, Srinivasan

    2005-01-01

    Micro-mechanical models for a study of nonlinear visco-elastic response of composite laminae are developed and their performance compared. A single integral constitutive law proposed by Schapery and subsequently generalized to multi-axial states of stress is utilized in the study for the matrix material. This is used in conjunction with a computationally facile scheme in which hereditary strains are computed using a recursive relation suggested by Henriksen. Composite response is studied using two competing micro-models, viz. a simplified Square Cell Model (SSCM) and a Finite Element based self-consistent Cylindrical Model (FECM). The algorithm is developed assuming that the material response computations are carried out in a module attached to a general purpose finite element program used for composite structural analysis. It is shown that the SSCM as used in investigations of material nonlinearity can involve significant errors in the prediction of transverse Young's modulus and shear modulus. The errors in the elastic strains thus predicted are of the same order of magnitude as the creep strains accruing due to visco-elasticity. The FECM on the other hand does appear to perform better both in the prediction of elastic constants and the study of creep response.

  19. On the the Contact Lens Problem: Modeling Rigid and Elastic Beams on Thin Films

    NASA Astrophysics Data System (ADS)

    Trinh, Philippe; Wilson, Stephen; Stone, Howard

    2011-11-01

    Generally, contact lenses are prescribed by the practitioner to fit each individual patient's eye, but these fitting-philosophies are based on empirical studies and a certain degree of trial-and-error. A badly fitted lens can cause a range of afflictions, which varies from mild dry-eye-discomfort, to more serious corneal diseases. Thus, at this heart of this problem, is the question of how a rigid or elastic plate interacts with the free-surface of a thin viscous film. In this talk, we present several mathematical models for the study of these plate-and-fluid problems. Asymptotic and numerical results are described, and we explain the role of elasticity, surface tension, viscosity, and pressure in determining the equilibrium solutions. Finally, we discuss the implications of our work on the contact lens problem, as well as on other coating processes which involve elastic substrates.

  20. Modulating DNA configuration by interfacial traction: an elastic rod model to characterize DNA folding and unfolding.

    PubMed

    Huang, Zaixing

    2011-01-01

    As a continuum model of DNA, a thin elastic rod subjected to interfacial interactions is used to investigate the equilibrium configuration of DNA in intracellular solution. The interfacial traction between the rod and the solution environment is derived in detail. Kirchhoff's theory of elastic rods is used to analyze the equilibrium configuration of a DNA segment under the action of the interfacial traction. The influences of the interfacial energy factor and bending stiffness on the toroidal spool formation of the DNA segment are discussed. The results show that the equilibrium configuration of DNA is mainly determined by competition between the interfacial energy and elastic strain energy of the DNA itself, and the interfacial traction is one of the forces that drives DNA folding and unfolding. PMID:22210963

  1. Modeling of Distributed Sensing of Elastic Waves by Fiber-Optic Interferometry.

    PubMed

    Agbodjan Prince, Just; Kohl, Franz; Sauter, Thilo

    2016-01-01

    This paper deals with the transduction of strain accompanying elastic waves in solids by firmly attached optical fibers. Stretching sections of optical fibers changes the time required by guided light to pass such sections. Exploiting interferometric techniques, highly sensitive fiber-optic strain transducers are feasible based on this fiber-intrinsic effect. The impact on the actual strain conversion of the fiber segment's shape and size, as well as its inclination to the elastic wavefront is studied. FEM analyses show that severe distortions of the interferometric response occur when the attached fiber length spans a noticeable fraction of the elastic wavelength. Analytical models of strain transduction are presented for typical transducer shapes. They are used to compute input-output relationships for the transduction of narrow-band strain pulses as a function of the mechanical wavelength. The described approach applies to many transducers depending on the distributed interaction with the investigated object. PMID:27608021

  2. Information Network Model Query Processing

    NASA Astrophysics Data System (ADS)

    Song, Xiaopu

    Information Networking Model (INM) [31] is a novel database model for real world objects and relationships management. It naturally and directly supports various kinds of static and dynamic relationships between objects. In INM, objects are networked through various natural and complex relationships. INM Query Language (INM-QL) [30] is designed to explore such information network, retrieve information about schema, instance, their attributes, relationships, and context-dependent information, and process query results in the user specified form. INM database management system has been implemented using Berkeley DB, and it supports INM-QL. This thesis is mainly focused on the implementation of the subsystem that is able to effectively and efficiently process INM-QL. The subsystem provides a lexical and syntactical analyzer of INM-QL, and it is able to choose appropriate evaluation strategies and index mechanism to process queries in INM-QL without the user's intervention. It also uses intermediate result structure to hold intermediate query result and other helping structures to reduce complexity of query processing.

  3. Multilayer weighted social network model

    NASA Astrophysics Data System (ADS)

    Murase, Yohsuke; Török, János; Jo, Hang-Hyun; Kaski, Kimmo; Kertész, János

    2014-11-01

    Recent empirical studies using large-scale data sets have validated the Granovetter hypothesis on the structure of the society in that there are strongly wired communities connected by weak ties. However, as interaction between individuals takes place in diverse contexts, these communities turn out to be overlapping. This implies that the society has a multilayered structure, where the layers represent the different contexts. To model this structure we begin with a single-layer weighted social network (WSN) model showing the Granovetterian structure. We find that when merging such WSN models, a sufficient amount of interlayer correlation is needed to maintain the relationship between topology and link weights, while these correlations destroy the enhancement in the community overlap due to multiple layers. To resolve this, we devise a geographic multilayer WSN model, where the indirect interlayer correlations due to the geographic constraints of individuals enhance the overlaps between the communities and, at the same time, the Granovetterian structure is preserved.

  4. Temperature dependence of elastic constants of embedded-atom models of palladium

    SciTech Connect

    Wolf, R.J.; Mansour, K.A.; Lee, M.W. ); Ray, J.R. )

    1992-10-01

    The elastic constants of fcc palladium are calculated as a function of temperature for four different embedded-atom-method (EAM) models and compared to experimental values. Two of these EAM models have been derived by other workers whereas two of the models are new. Because of the elastic anomaly near 120 K, in the shear constant [ital C][sub 44] of Pd, the use of this zero-temperature elastic constant to determine the Pd EAM potential leads to errors in the calculated [ital C][sub 44] above the Debye temperature of 280 K where the potentials are to be used. To correct this behavior we determine the EAM potential in the two new EAM models so that [ital C][sub 44] is in much better agreement with the experimental value above the Debye temperature. Interestingly in both of these new models the melting temperature is significantly higher and in better agreement with the experimental value of 1825 K. One of our models uses a conventional EAM third-neighbor interaction model whereas our other model is a fifth-neighbor interaction model.

  5. Network Bandwidth Utilization Forecast Model on High Bandwidth Network

    SciTech Connect

    Yoo, Wucherl; Sim, Alex

    2014-07-07

    With the increasing number of geographically distributed scientific collaborations and the scale of the data size growth, it has become more challenging for users to achieve the best possible network performance on a shared network. We have developed a forecast model to predict expected bandwidth utilization for high-bandwidth wide area network. The forecast model can improve the efficiency of resource utilization and scheduling data movements on high-bandwidth network to accommodate ever increasing data volume for large-scale scientific data applications. Univariate model is developed with STL and ARIMA on SNMP path utilization data. Compared with traditional approach such as Box-Jenkins methodology, our forecast model reduces computation time by 83.2percent. It also shows resilience against abrupt network usage change. The accuracy of the forecast model is within the standard deviation of the monitored measurements.

  6. A nonlinear magneto-thermo-elastic coupled hysteretic constitutive model for magnetostrictive alloys

    NASA Astrophysics Data System (ADS)

    Jin, Ke; Kou, Yong; Zheng, Xiaojing

    2012-06-01

    This paper presents a general hysteretic constitutive law of nonlinear magneto-thermo-elastic coupling for magnetostrictive alloys. The model considered here is thermodynamically motivated and based on the Gibbs free energy function. A nonlinear part of the elastic strain arising from magnetic domain rotation induced by the pre-stress is taken into account. Furthermore, the movement of the domain walls is incorporated to describe hysteresis based on Jiles-Atherton's model. Then a set of closed and analytical expressions of the constitutive law for the magnetostrictive rods and films are obtained, and the parameters appearing in the model can be determined by those measurable experiments in mechanics and physics. Comparing this model with other existing models in this field, the quantitative results show that the relationships obtained here are more effective to describe the effects of the pre-stress or in-plane residual stress and ambient temperature on the magnetization or the magnetostriction hysteresis loops.

  7. Ozone Modeling Using Neural Networks.

    NASA Astrophysics Data System (ADS)

    Narasimhan, Ramesh; Keller, Joleen; Subramaniam, Ganesh; Raasch, Eric; Croley, Brandon; Duncan, Kathleen; Potter, William T.

    2000-03-01

    Ozone models for the city of Tulsa were developed using neural network modeling techniques. The neural models were developed using meteorological data from the Oklahoma Mesonet and ozone, nitric oxide, and nitrogen dioxide (NO2) data from Environmental Protection Agency monitoring sites in the Tulsa area. An initial model trained with only eight surface meteorological input variables and NO2 was able to simulate ozone concentrations with a correlation coefficient of 0.77. The trained model was then used to evaluate the sensitivity to the primary variables that affect ozone concentrations. The most important variables (NO2, temperature, solar radiation, and relative humidity) showed response curves with strong nonlinear codependencies. Incorporation of ozone concentrations from the previous 3 days into the model increased the correlation coefficient to 0.82. As expected, the ozone concentrations correlated best with the most recent (1-day previous) values. The model's correlation coefficient was increased to 0.88 by the incorporation of upper-air data from the National Weather Service's Nested Grid Model. Sensitivity analysis for the upper-air variables indicated unusual positive correlations between ozone and the relative humidity from 500 hPa to the tropopause in addition to the other expected correlations with upper-air temperatures, vertical wind velocity, and 1000-500-hPa layer thickness. The neural model results are encouraging for the further use of these systems to evaluate complex parameter cosensitivities, and for the use of these systems in automated ozone forecast systems.

  8. Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM)

    NASA Astrophysics Data System (ADS)

    Xia, Kelin; Opron, Kristopher; Wei, Guo-Wei

    2015-11-01

    Gaussian network model (GNM) and anisotropic network model (ANM) are some of the most popular methods for the study of protein flexibility and related functions. In this work, we propose generalized GNM (gGNM) and ANM methods and show that the GNM Kirchhoff matrix can be built from the ideal low-pass filter, which is a special case of a wide class of correlation functions underpinning the linear scaling flexibility-rigidity index (FRI) method. Based on the mathematical structure of correlation functions, we propose a unified framework to construct generalized Kirchhoff matrices whose matrix inverse leads to gGNMs, whereas, the direct inverse of its diagonal elements gives rise to FRI method. With this connection, we further introduce two multiscale elastic network models, namely, multiscale GNM (mGNM) and multiscale ANM (mANM), which are able to incorporate different scales into the generalized Kirchhoff matrices or generalized Hessian matrices. We validate our new multiscale methods with extensive numerical experiments. We illustrate that gGNMs outperform the original GNM method in the B-factor prediction of a set of 364 proteins. We demonstrate that for a given correlation function, FRI and gGNM methods provide essentially identical B-factor predictions when the scale value in the correlation function is sufficiently large. More importantly, we reveal intrinsic multiscale behavior in protein structures. The proposed mGNM and mANM are able to capture this multiscale behavior and thus give rise to a significant improvement of more than 11% in B-factor predictions over the original GNM and ANM methods. We further demonstrate the benefits of our mGNM through the B-factor predictions of many proteins that fail the original GNM method. We show that the proposed mGNM can also be used to analyze protein domain separations. Finally, we showcase the ability of our mANM for the analysis of protein collective motions.

  9. Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM).

    PubMed

    Xia, Kelin; Opron, Kristopher; Wei, Guo-Wei

    2015-11-28

    Gaussian network model (GNM) and anisotropic network model (ANM) are some of the most popular methods for the study of protein flexibility and related functions. In this work, we propose generalized GNM (gGNM) and ANM methods and show that the GNM Kirchhoff matrix can be built from the ideal low-pass filter, which is a special case of a wide class of correlation functions underpinning the linear scaling flexibility-rigidity index (FRI) method. Based on the mathematical structure of correlation functions, we propose a unified framework to construct generalized Kirchhoff matrices whose matrix inverse leads to gGNMs, whereas, the direct inverse of its diagonal elements gives rise to FRI method. With this connection, we further introduce two multiscale elastic network models, namely, multiscale GNM (mGNM) and multiscale ANM (mANM), which are able to incorporate different scales into the generalized Kirchhoff matrices or generalized Hessian matrices. We validate our new multiscale methods with extensive numerical experiments. We illustrate that gGNMs outperform the original GNM method in the B-factor prediction of a set of 364 proteins. We demonstrate that for a given correlation function, FRI and gGNM methods provide essentially identical B-factor predictions when the scale value in the correlation function is sufficiently large. More importantly, we reveal intrinsic multiscale behavior in protein structures. The proposed mGNM and mANM are able to capture this multiscale behavior and thus give rise to a significant improvement of more than 11% in B-factor predictions over the original GNM and ANM methods. We further demonstrate the benefits of our mGNM through the B-factor predictions of many proteins that fail the original GNM method. We show that the proposed mGNM can also be used to analyze protein domain separations. Finally, we showcase the ability of our mANM for the analysis of protein collective motions. PMID:26627949

  10. Excitation function of elastic pp scattering from a unitarily extended Bialas-Bzdak model

    NASA Astrophysics Data System (ADS)

    Nemes, F.; Csörgő, T.; Csanád, M.

    2015-05-01

    The Bialas-Bzdak model of elastic proton-proton scattering assumes a purely imaginary forward scattering amplitude, which consequently vanishes at the diffractive minima. We extended the model to arbitrarily large real parts in a way that constraints from unitarity are satisfied. The resulting model is able to describe elastic pp scattering not only at the lower ISR energies but also at √ {s} = 7 TeV in a statistically acceptable manner, both in the diffractive cone and in the region of the first diffractive minimum. The total cross-section as well as the differential cross-section of elastic proton-proton scattering is predicted for the future LHC energies of √ {s} = 13, 14, 15 TeV and also to 28 TeV. A nontrivial, significantly nonexponential feature of the differential cross-section of elastic proton-proton scattering is analyzed and the excitation function of the nonexponential behavior is predicted. The excitation function of the shadow profiles is discussed and related to saturation at small impact parameters.

  11. A stable scheme for a nonlinear, multiphase tumor growth model with an elastic membrane

    PubMed Central

    Chen, Ying; Wise, Steven M.; Shenoy, Vivek B.; Lowengrub, John S.

    2014-01-01

    Summary In this paper, we extend the 3D multispecies diffuse-interface model of the tumor growth, which was derived in Wise et al. (Three-dimensional multispecies nonlinear tumor growth-I: model and numerical method, J. Theor. Biol. 253 (2008) 524–543), and incorporate the effect of a stiff membrane to model tumor growth in a confined microenvironment. We then develop accurate and efficient numerical methods to solve the model. When the membrane is endowed with a surface energy, the model is variational, and the numerical scheme, which involves adaptive mesh refinement and a nonlinear multigrid finite difference method, is demonstrably shown to be energy stable. Namely, in the absence of cell proliferation and death, the discrete energy is a nonincreasing function of time for any time and space steps. When a simplified model of membrane elastic energy is used, the resulting model is derived analogously to the surface energy case. However, the elastic energy model is actually nonvariational because certain coupling terms are neglected. Nevertheless, a very stable numerical scheme is developed following the strategy used in the surface energy case. 2D and 3D simulations are performed that demonstrate the accuracy of the algorithm and illustrate the shape instabilities and nonlinear effects of membrane elastic forces that may resist or enhance growth of the tumor. Compared with the standard Crank–Nicholson method, the time step can be up to 25 times larger using the new approach. PMID:24443369

  12. A stable scheme for a nonlinear, multiphase tumor growth model with an elastic membrane.

    PubMed

    Chen, Ying; Wise, Steven M; Shenoy, Vivek B; Lowengrub, John S

    2014-07-01

    In this paper, we extend the 3D multispecies diffuse-interface model of the tumor growth, which was derived in Wise et al. (Three-dimensional multispecies nonlinear tumor growth-I: model and numerical method, J. Theor. Biol. 253 (2008) 524-543), and incorporate the effect of a stiff membrane to model tumor growth in a confined microenvironment. We then develop accurate and efficient numerical methods to solve the model. When the membrane is endowed with a surface energy, the model is variational, and the numerical scheme, which involves adaptive mesh refinement and a nonlinear multigrid finite difference method, is demonstrably shown to be energy stable. Namely, in the absence of cell proliferation and death, the discrete energy is a nonincreasing function of time for any time and space steps. When a simplified model of membrane elastic energy is used, the resulting model is derived analogously to the surface energy case. However, the elastic energy model is actually nonvariational because certain coupling terms are neglected. Nevertheless, a very stable numerical scheme is developed following the strategy used in the surface energy case. 2D and 3D simulations are performed that demonstrate the accuracy of the algorithm and illustrate the shape instabilities and nonlinear effects of membrane elastic forces that may resist or enhance growth of the tumor. Compared with the standard Crank-Nicholson method, the time step can be up to 25 times larger using the new approach. PMID:24443369

  13. Voronoi based microstructure modelling for elastic wave propagation

    NASA Astrophysics Data System (ADS)

    Shivaprasad, S.; Balasubramaniam, Krishnan; Krishnamurthy, C. V.

    2016-02-01

    Ultrasonic assessment of materials and defects are affected by microstructural parameters like grain size and texture. When a beam of ultrasound propagates in a polycrystalline medium, it undergoes extensive scattering by grains, grain boundaries and other microstructural features such as dislocations, voids, micro cracks etc. To understand the role of anisotropy and grain size distribution on an ultrasonic beam, a model system is proposed for carrying out ultrasonic wave propagation in a model characterized by grain size distribution and grain orientation distribution. A 2D polycrystalline medium constructed using Voronoi tessellations with a specific grain size distribution is considered and orientational averaging studies are carried out.

  14. Modelling land-fast sea ice using a linear elastic model

    NASA Astrophysics Data System (ADS)

    Plante, Mathieu; Tremblay, Bruno

    2016-04-01

    Land-fast ice is an important component of the Arctic system, capping the coastal Arctic waters for most of the year and exerting a large influence on ocean-atmosphere heat exchanges. Yet, the accurate representation of land-fast ice in most large-scale sea ice models remains a challenge, part due to the difficult (and sometimes non-physical) parametrisation of ice fracture. In this study, a linear elastic model is developed to investigate the internal stresses induced by the wind forcing on the land-fast ice, modelled as a 2D elastic plate. The model simulates ice fracture by the implementation of a damage coefficient which causes a local reduction in internal stress. This results in a cascade propagation of damage, simulating the ice fracture that determines the position of the land-fast ice edge. The modelled land-fast ice cover is sensitive to the choice of failure criterion. The parametrised cohesion, tensile and compressive strength and the relationship with the land-fast ice stability is discussed. To estimate the large scale mechanical properties of land-fast ice, these results are compared to a set of land-fast ice break up events and ice bridge formations observed in the Siberian Arctic. These events are identified using brightness temperature imagery from the MODIS (Moderate Resolution Imaging Spectroradiometer) Terra and Aqua satellites, from which the position of the flaw lead is identifiable by the opening of polynyi adjacent to the land-fast ice edge. The shape of the land-fast ice before, during and after these events, along with the characteristic scale of the resulting ice floes, are compared to the model results to extrapolate the stress state that corresponds to these observations. The model setting that best reproduce the scale of the observed break up events is used to provide an estimation of the strength of the ice relative to the wind forcing. These results will then be used to investigate the relationship between the ice thickness and the

  15. Nonlinear PLS modeling using neural networks

    SciTech Connect

    Qin, S.J.; McAvoy, T.J.

    1994-12-31

    This paper discusses the embedding of neural networks into the framework of the PLS (partial least squares) modeling method resulting in a neural net PLS modeling approach. By using the universal approximation property of neural networks, the PLS modeling method is genealized to a nonlinear framework. The resulting model uses neural networks to capture the nonlinearity and keeps the PLS projection to attain robust generalization property. In this paper, the standard PLS modeling method is briefly reviewed. Then a neural net PLS (NNPLS) modeling approach is proposed which incorporates feedforward networks into the PLS modeling. A multi-input-multi-output nonlinear modeling task is decomposed into linear outer relations and simple nonlinear inner relations which are performed by a number of single-input-single-output networks. Since only a small size network is trained at one time, the over-parametrized problem of the direct neural network approach is circumvented even when the training data are very sparse. A conjugate gradient learning method is employed to train the network. It is shown that, by analyzing the NNPLS algorithm, the global NNPLS model is equivalent to a multilayer feedforward network. Finally, applications of the proposed NNPLS method are presented with comparison to the standard linear PLS method and the direct neural network approach. The proposed neural net PLS method gives better prediction results than the PLS modeling method and the direct neural network approach.

  16. An Adaptive Complex Network Model for Brain Functional Networks

    PubMed Central

    Gomez Portillo, Ignacio J.; Gleiser, Pablo M.

    2009-01-01

    Brain functional networks are graph representations of activity in the brain, where the vertices represent anatomical regions and the edges their functional connectivity. These networks present a robust small world topological structure, characterized by highly integrated modules connected sparsely by long range links. Recent studies showed that other topological properties such as the degree distribution and the presence (or absence) of a hierarchical structure are not robust, and show different intriguing behaviors. In order to understand the basic ingredients necessary for the emergence of these complex network structures we present an adaptive complex network model for human brain functional networks. The microscopic units of the model are dynamical nodes that represent active regions of the brain, whose interaction gives rise to complex network structures. The links between the nodes are chosen following an adaptive algorithm that establishes connections between dynamical elements with similar internal states. We show that the model is able to describe topological characteristics of human brain networks obtained from functional magnetic resonance imaging studies. In particular, when the dynamical rules of the model allow for integrated processing over the entire network scale-free non-hierarchical networks with well defined communities emerge. On the other hand, when the dynamical rules restrict the information to a local neighborhood, communities cluster together into larger ones, giving rise to a hierarchical structure, with a truncated power law degree distribution. PMID:19738902

  17. AeroPropulsoServoElasticity: Dynamic Modeling of the Variable Cycle Propulsion System

    NASA Technical Reports Server (NTRS)

    Kopasakis, George

    2012-01-01

    This presentation was made at the 2012 Fundamental Aeronautics Program Technical Conference and it covers research work for the Dynamic Modeling of the Variable cycle Propulsion System that was done under the Supersonics Project, in the area of AeroPropulsoServoElasticity. The presentation covers the objective for the propulsion system dynamic modeling work, followed by the work that has been done so far to model the variable Cycle Engine, modeling of the inlet, the nozzle, the modeling that has been done to model the affects of flow distortion, and finally presenting some concluding remarks and future plans.

  18. A 3-D elasticity theory based model for acoustic radiation from multilayered anisotropic plates.

    PubMed

    Shen, C; Xin, F X; Lu, T J

    2014-05-01

    A theoretical model built upon three-dimensional elasticity theory is developed to investigate the acoustic radiation from multilayered anisotropic plates subjected to a harmonic point force excitation. Fourier transform technique and stationary phase method are combined to predict the far-field radiated sound pressure of one-side water immersed plate. Compared to equivalent single-layer plate models, the present model based on elasticity theory can differentiate radiated sound pressure between dry-side and wet-side excited cases, as well as discrepancies induced by different layer sequences for multilayered anisotropic plates. These results highlight the superiority of the present theoretical model especially for handling multilayered anisotropic structures. PMID:24815294

  19. Using the Theory of Elasticity to Model the Structure of DNA Loops

    NASA Astrophysics Data System (ADS)

    Balaeff, Alexander; Mahadevan, L.; Schulten, Klaus

    2000-03-01

    A fast computational method to study the conformation and energetics of short DNA loops is presented. The DNA is modeled as an electrically charged elastic rod. The ensemble of equilibrium conformations of the DNA loop, attainable for given boundary conditions, is generated as a set of numerical solutions to the equations of the Kirchhoff-Love theory of elasticity. The equations are augmented by electrostatic and van der Waals force terms. These modifications allow one to account for the DNA self-repulsion and to model the DNA loop interactions with other macromolecules, involved in a biomolecular system. We demonstrate the application of the method to the test system: the looped lac operon promoter of E. coli clamped by the repressor protein and stabilized by the catabolite gene activator protein. The developed coarse-grained modeling method provides the basis for multi-resolution modeling of protein-DNA complexes, e.g., in combination with all-atom molecular dynamics simulations.

  20. Anisotropic Elastic Resonance Scattering model for the Neutron Transport equation

    SciTech Connect

    Mohamed Ouisloumen; Abderrafi M. Ougouag; Shadi Z. Ghrayeb

    2014-11-24

    The resonance scattering transfer cross-section has been reformulated to account for anisotropic scattering in the center-of-mass of the neutron-nucleus system. The main innovation over previous implementations is the relaxation of the ubiquitous assumption of isotropic scattering in the center-of-mass and the actual effective use of scattering angle distributions from evaluated nuclear data files in the computation of the angular moments of the resonant scattering kernels. The formulas for the high order anisotropic moments in the laboratory system are also derived. A multi-group numerical formulation is derived and implemented into a module incorporated within the NJOY nuclear data processing code. An ultra-fine energy mesh cross section library was generated using these new theoretical models and then was used for fuel assembly calculations with the PARAGON lattice physics code. The results obtained indicate a strong effect of this new model on reactivity, multi-group fluxes and isotopic inventory during depletion.

  1. Modelling of nonlinear wave scattering in a delaminated elastic bar

    PubMed Central

    Khusnutdinova, K. R.; Tranter, M. R.

    2015-01-01

    Integrity of layered structures, extensively used in modern industry, strongly depends on the quality of their interfaces; poor adhesion or delamination can lead to a failure of the structure. Can nonlinear waves help us to control the quality of layered structures? In this paper, we numerically model the dynamics of a long longitudinal strain solitary wave in a split, symmetric layered bar. The recently developed analytical approach, based on matching two asymptotic multiple-scales expansions and the integrability theory of the Korteweg–de Vries equation by the inverse scattering transform, is used to develop an effective semi-analytical numerical approach for these types of problems. We also employ a direct finite-difference method and compare the numerical results with each other, and with the analytical predictions. The numerical modelling confirms that delamination causes fission of an incident solitary wave and, thus, can be used to detect the defect. PMID:26730218

  2. Elastic properties of model 3-D porous ceramics and foams

    NASA Astrophysics Data System (ADS)

    Roberts, Anthony; Garboczi, Edward

    2000-03-01

    The novel properties of many new porous materials are related to their interesting internal microstructure. Apart from simple cases, there exist no theoretical means of predicting the bulk properties of these materials. This limits our ability to guide microstructure optimization for a particular purpose. We use a large scale finite element method to demonstrate the complex relationship between microstructure and the effective properties of realistic three-dimensional model porous ceramics and foams. We find that pore-shape and interconnectivity strongly influence the properties of sintered ceramics. For porous foams we have studied the role of coordination number, random disorder, and strut shape on the Young's modulus and Poisson's ratio. We find that that Voronoi tesselations, commonly used to model solid foams, show unphysical behavior, in particular they are incompressible (rubber-like) at low densities. Deletion of just 10% of the bonds in the model reduces the bulk modulus by 75%, more in line with experimental evidence. The FEM results are generally in good agreement with experimental data for ceramics and foams, and can be used as both a predictive and interpretative tool by experimentalists.

  3. Discrete element modeling of rock deformation, fracture network development and permeability evolution under hydraulic stimulation

    SciTech Connect

    Shouchun Deng; Robert Podgorney; Hai Huang

    2011-02-01

    Key challenges associated with the EGS reservoir development include the ability to reliably predict hydraulic fracturing and the deformation of natural fractures as well as estimating permeability evolution of the fracture network with time. We have developed a physics-based rock deformation and fracture propagation simulator by coupling a discrete element model (DEM) for fracturing with a network flow model. In DEM model, solid rock is represented by a network of discrete elements (often referred as particles) connected by various types of mechanical bonds such as springs, elastic beams or bonds that have more complex properties (such as stress-dependent elastic constants). Fracturing is represented explicitly as broken bonds (microcracks), which form and coalesce into macroscopic fractures when external and internal load is applied. The natural fractures are represented by a series of connected line segments. Mechanical bonds that intersect with such line segments are removed from the DEM model. A network flow model using conjugate lattice to the DEM network is developed and coupled with the DEM. The fluid pressure gradient exerts forces on individual elements of the DEM network, which therefore deforms the mechanical bonds and breaks them if the deformation reaches a prescribed threshold value. Such deformation/fracturing in turn changes the permeability of the flow network, which again changes the evolution of fluid pressure, intimately coupling the two processes. The intimate coupling between fracturing/deformation of fracture networks and fluid flow makes the meso-scale DEM- network flow simulations necessary in order to accurately evaluate the permeability evolution, as these methods have substantial advantages over conventional continuum mechanical models of elastic rock deformation. The challenges that must be overcome to simulate EGS reservoir stimulation, preliminary results, progress to date and near future research directions and opportunities will be

  4. A 3D Orthotropic Strain-Rate Dependent Elastic Damage Material Model.

    SciTech Connect

    English, Shawn Allen

    2014-09-01

    A three dimensional orthotropic elastic constitutive model with continuum damage and cohesive based fracture is implemented for a general polymer matrix composite lamina. The formulation assumes the possibility of distributed (continuum) damage followed b y localized damage. The current damage activation functions are simply partially interactive quadratic strain criteria . However, the code structure allows for changes in the functions without extraordinary effort. The material model formulation, implementation, characterization and use cases are presented.

  5. Modelling of drying induced stress of clay: elastic and viscoelastic behaviours

    NASA Astrophysics Data System (ADS)

    Hammouda, I.; Mihoubi, D.

    2014-02-01

    The aim of this work is to study the influence of the mechanical behaviour of a porous saturated material on its predicted response to drying. A convective drying model is applied on a kaolin rectangular sample. Two mechanical behaviours are studied: elastic and viscoelastic. Numerical results show a significant difference between the stress evolutions obtained for both behaviours. The simulation result of viscoelastic model is consistent with what actually happens during drying and describes more the behaviour of the kaolin sample.

  6. An evolutionary model of social networks

    NASA Astrophysics Data System (ADS)

    Ludwig, M.; Abell, P.

    2007-07-01

    Social networks in communities, markets, and societies self-organise through the interactions of many individuals. In this paper we use a well-known mechanism of social interactions — the balance of sentiment in triadic relations — to describe the development of social networks. Our model contrasts with many existing network models, in that people not only establish but also break up relations whilst the network evolves. The procedure generates several interesting network features such as a variety of degree distributions and degree correlations. The resulting network converges under certain conditions to a steady critical state where temporal disruptions in triangles follow a power-law distribution.

  7. Towards an Anisotropic Whole Mantle 3D Elastic Velocity Model

    NASA Astrophysics Data System (ADS)

    Panning, M. P.; Romanowicz, B.; Gung, Y.

    2001-12-01

    Many studies have documented the existence of anisotropy in the earth's upper mantle, concentrated in the top 200 km. This evidence comes from the study of surface waves as well as shear wave splitting. There is also evidence for shear wave splitting in D", at least in well sampled regions. There are some hints of anisotropy at the base of the transition zone. Tomographic models of the upper mantle have been developed with simplifying assumptions about the nature of the anisotropy, in order to minimize the number of free parameters in the inversions. Some assume transverse isotropy (e.g Ekström and Dziewonski, 1997), others include additional degrees of freedom with some realistic constraints on mineralogy (e.g. Montagner and Tanimoto, 1991). Our goal is to investigate anisotropy in the whole mantle, using the framework of waveform inversion, and the nonlinear asymptotic mode coupling theory (NACT), previously developed and applied to the construction of whole-mantle SH velocity models (Li and Romanowicz, 1996; Mégnin and Romanowicz, 2000). For this we require a 3 component dataset, and we have extended our automatic transverse (T) component wavepicking procedures to the vertical (Z) and longitudinal (L) component - a non-trivial task given the large number of phases present in the coupled P-SV system. A useful initial assumption, for which the theory has been readily adapted, is that of transverse isotropy. As a first step towards this, we have been investigating inversions using T component and Z,L component data separately. In particular, this allows us to explore the sampling that can be achieved with Z,L component data alone in the deepest part of the mantle. Indeed, D" is in general much better sampled in SH than in SV, owing to the availability of SHdiff at large distances, while SVdiff decays more rapidly due to mantle-core coupling. We present the results of our resolution experiments and discuss the differences between the 3D SV model obtained in well

  8. An Elastic-Plastic and Strength Prediction Model for Injection-Molded Long-Fiber Thermoplastics

    SciTech Connect

    Nguyen, Ba Nghiep; Kunc, Vlastimil; Phelps, Jay; Tucker III, Charles L.; Bapanapalli, Satish K.

    2008-09-01

    This paper applies a recently developed model to predict the elastic-plastic stress/strain response and strength of injection-molded long-fiber thermoplastics (LFTs). The model combines a micro-macro constitutive modeling approach with experimental characterization and modeling of the composite microstructure to determine the composite stress/strain response and strength. Specifically, it accounts for elastic fibers embedded in a thermoplastic resin that exhibits the elastic-plastic behavior obeying the Ramberg-Osgood relation and J-2 deformation theory of plasticity. It also accounts for fiber length, orientation and volume fraction distributions in the composite formed by the injection-molding process. Injection-molded-long-glass-fiber/polypropylene (PP) specimens were prepared for mechanical characterization and testing. Fiber length, orientation, and volume fraction distributions were then measured at some selected locations for use in the computation. Fiber orientations in these specimens were also predicted using an anisotropic rotary diffusion model developed for LFTs. The stress-strain response of the as-formed composite was computed by an incremental procedure that uses the Eshelby’s equivalent inclusion method, the Mori-Tanaka assumption and a fiber orientation averaging technique. The model has been validated against the experimental stress-strain results obtained for these long-glass-fiber/PP specimens.

  9. Determination of Viral Capsid Elastic Properties from Equilibrium Thermal Fluctuations

    NASA Astrophysics Data System (ADS)

    May, Eric R.; Brooks, Charles L., III

    2011-05-01

    We apply two-dimensional elasticity theory to viral capsids to develop a framework for calculating elastic properties of viruses from equilibrium thermal fluctuations of the capsid surface in molecular dynamics and elastic network model trajectories. We show that the magnitudes of the long wavelength modes of motion available in a simulation with all atomic degrees of freedom are recapitulated by an elastic network model. For the mode spectra to match, the elastic network model must be scaled appropriately by a factor which can be determined from an icosahedrally constrained all-atom simulation. With this method we calculate the two-dimensional Young’s modulus Y, bending modulus κ, and Föppl-von Kármán number γ, for the T=1 mutant of the Sesbania mosaic virus. The values determined are in the range of previous theoretical estimates.

  10. Modeling Diagnostic Assessments with Bayesian Networks

    ERIC Educational Resources Information Center

    Almond, Russell G.; DiBello, Louis V.; Moulder, Brad; Zapata-Rivera, Juan-Diego

    2007-01-01

    This paper defines Bayesian network models and examines their applications to IRT-based cognitive diagnostic modeling. These models are especially suited to building inference engines designed to be synchronous with the finer grained student models that arise in skills diagnostic assessment. Aspects of the theory and use of Bayesian network models…

  11. Inflation or deflation? New results for Mayon Volcano applying elastic-gravitational modeling

    NASA Astrophysics Data System (ADS)

    Fernández, J.; Tiampo, K. F.; Jentzsch, G.; Charco, M.; Rundle, J. B.

    Volcanic activity produces deformation and gravity changes that many times can be used as precursors of future eruptions. Applying geodetic techniques to monitoring activity involves interpretation using deformation models. Usually, the observed changes of the deformation and gravity fields are interpreted seperately, not in a joint inversion. It can be difficult, if not impossible, to interpret the data coherently or correctly in terms of the characteristics of the intrusion or the deflation derived from the gravity changes with purely elastic models, as in the case of Mayon Volcano, Phillipines. We show that elastic-gravitational models can be used to interpret these cases simultaneously leading to a result that is more plausible on the basis of the available information. Thus, we may need to change the philosophy normally used to interpret geodetic observations. Interpretation as proposed in this work can significantly improve the possibility of predicting future eruptions.

  12. Electro-elastic modeling of a dielectric elastomer diaphragm for a prosthetic blood pump

    NASA Astrophysics Data System (ADS)

    Goulbourne, Nakhiah C.; Frecker, Mary I.; Mockensturm, Eric

    2004-07-01

    A dielectric elastomer diaphragm is to be designed for potential use in a prosthetic blood pump. Application of an electric field deforms the membrane such that it moves from an initially flat configuration to an inflated state. This motion creates positive displacement of blood from the cardiac chambers thus mimicking the pump-like behavior of the natural heart. A comprehensive large deformation model accounting for the combined dielectric and elastic effect has been formulated. This paper presents recent developments in the model to further incorporate the entire nonlinear range of material elastic behavior and to more accurately represent the applied electric field by keeping the voltage constant as the membrane thickness decreases. The updated model is used to calculate the effects of varying system parameters such as pressure, voltage, prestretch, material constants, and membrane geometry. Analytical results are obtained for biaxially stretched 3M VHB 4905 polyacrylate films.

  13. ELASTIC NET FOR COX'S PROPORTIONAL HAZARDS MODEL WITH A SOLUTION PATH ALGORITHM.

    PubMed

    Wu, Yichao

    2012-01-01

    For least squares regression, Efron et al. (2004) proposed an efficient solution path algorithm, the least angle regression (LAR). They showed that a slight modification of the LAR leads to the whole LASSO solution path. Both the LAR and LASSO solution paths are piecewise linear. Recently Wu (2011) extended the LAR to generalized linear models and the quasi-likelihood method. In this work we extend the LAR further to handle Cox's proportional hazards model. The goal is to develop a solution path algorithm for the elastic net penalty (Zou and Hastie (2005)) in Cox's proportional hazards model. This goal is achieved in two steps. First we extend the LAR to optimizing the log partial likelihood plus a fixed small ridge term. Then we define a path modification, which leads to the solution path of the elastic net regularized log partial likelihood. Our solution path is exact and piecewise determined by ordinary differential equation systems. PMID:23226932

  14. A Biologically Inspired Network Design Model

    PubMed Central

    Zhang, Xiaoge; Adamatzky, Andrew; Chan, Felix T.S.; Deng, Yong; Yang, Hai; Yang, Xin-She; Tsompanas, Michail-Antisthenis I.; Sirakoulis, Georgios Ch.; Mahadevan, Sankaran

    2015-01-01

    A network design problem is to select a subset of links in a transport network that satisfy passengers or cargo transportation demands while minimizing the overall costs of the transportation. We propose a mathematical model of the foraging behaviour of slime mould P. polycephalum to solve the network design problem and construct optimal transport networks. In our algorithm, a traffic flow between any two cities is estimated using a gravity model. The flow is imitated by the model of the slime mould. The algorithm model converges to a steady state, which represents a solution of the problem. We validate our approach on examples of major transport networks in Mexico and China. By comparing networks developed in our approach with the man-made highways, networks developed by the slime mould, and a cellular automata model inspired by slime mould, we demonstrate the flexibility and efficiency of our approach. PMID:26041508

  15. Implementation of orthogonal frequency division multiplexing (OFDM) and advanced signal processing for elastic optical networking in accordance with networking and transmission constraints

    NASA Astrophysics Data System (ADS)

    Johnson, Stanley

    An increasing adoption of digital signal processing (DSP) in optical fiber telecommunication has brought to the fore several interesting DSP enabled modulation formats. One such format is orthogonal frequency division multiplexing (OFDM), which has seen great success in wireless and wired RF applications, and is being actively investigated by several research groups for use in optical fiber telecom. In this dissertation, I present three implementations of OFDM for elastic optical networking and distributed network control. The first is a field programmable gate array (FPGA) based real-time implementation of a version of OFDM conventionally known as intensity modulation and direct detection (IMDD) OFDM. I experimentally demonstrate the ability of this transmission system to dynamically adjust bandwidth and modulation format to meet networking constraints in an automated manner. To the best of my knowledge, this is the first real-time software defined networking (SDN) based control of an OFDM system. In the second OFDM implementation, I experimentally demonstrate a novel OFDM transmission scheme that supports both direct detection and coherent detection receivers simultaneously using the same OFDM transmitter. This interchangeable receiver solution enables a trade-off between bit rate and equipment cost in network deployment and upgrades. I show that the proposed transmission scheme can provide a receiver sensitivity improvement of up to 1.73 dB as compared to IMDD OFDM. I also present two novel polarization analyzer based detection schemes, and study their performance using experiment and simulation. In the third implementation, I present an OFDM pilot-tone based scheme for distributed network control. The first instance of an SDN-based OFDM elastic optical network with pilot-tone assisted distributed control is demonstrated. An improvement in spectral efficiency and a fast reconfiguration time of 30 ms have been achieved in this experiment. Finally, I

  16. A nonaffine network model for elastomers undergoing finite deformations

    NASA Astrophysics Data System (ADS)

    Davidson, Jacob D.; Goulbourne, N. C.

    2013-08-01

    In this work, we construct a new physics-based model of rubber elasticity to capture the strain softening, strain hardening, and deformation-state dependent response of rubber materials undergoing finite deformations. This model is unique in its ability to capture large-stretch mechanical behavior with parameters that are connected to the polymer chemistry and can also be easily identified with the important characteristics of the macroscopic stress-stretch response. The microscopic picture consists of two components: a crosslinked network of Langevin chains and an entangled network with chains confined to a nonaffine tube. These represent, respectively, changes in entropy due to thermally averaged chain conformations and changes in entropy due to the magnitude of these conformational fluctuations. A simple analytical form for the strain energy density is obtained using Rubinstein and Panyukov's single-chain description of network behavior. The model only depends on three parameters that together define the initial modulus, extent of strain softening, and the onset of strain hardening. Fits to large stretch data for natural rubber, silicone rubber, VHB 4905 (polyacrylate rubber), and b186 rubber (a carbon black-filled rubber) are presented, and a comparison is made with other similar constitutive models of large-stretch rubber elasticity. We demonstrate that the proposed model provides a complete description of elastomers undergoing large deformations for different applied loading configurations. Moreover, since the strain energy is obtained using a clear set of physical assumptions, this model may be tested and used to interpret the results of computer simulation and experiments on polymers of known microscopic structure.

  17. Statistical analysis of blocking probability and fragmentation based on Markov modeling of elastic spectrum allocation on fiber link

    NASA Astrophysics Data System (ADS)

    Rosa, A. N. F.; Wiatr, P.; Cavdar, C.; Carvalho, S. V.; Costa, J. C. W. A.; Wosinska, L.

    2015-11-01

    In Elastic Optical Network (EON), spectrum fragmentation refers to the existence of non-aligned, small-sized blocks of free subcarrier slots in the optical spectrum. Several metrics have been proposed in order to quantify a level of spectrum fragmentation. Approximation methods might be used for estimating average blocking probability and some fragmentation measures, but are so far unable to accurately evaluate the influence of different sizes of connection requests and do not allow in-depth investigation of blocking events and their relation to fragmentation. The analytical study of the effect of fragmentation on requests' blocking probability is still under-explored. In this work, we introduce new definitions for blocking that differentiate between the reasons for the blocking events. We developed a framework based on Markov modeling to calculate steady-state probabilities for the different blocking events and to analyze fragmentation related problems in elastic optical links under dynamic traffic conditions. This framework can also be used for evaluation of different definitions of fragmentation in terms of their relation to the blocking probability. We investigate how different allocation request sizes contribute to fragmentation and blocking probability. Moreover, we show to which extend blocking events, due to insufficient amount of available resources, become inevitable and, compared to the amount of blocking events due to fragmented spectrum, we draw conclusions on the possible gains one can achieve by system defragmentation. We also show how efficient spectrum allocation policies really are in reducing the part of fragmentation that in particular leads to actual blocking events. Simulation experiments are carried out showing good match with our analytical results for blocking probability in a small scale scenario. Simulated blocking probabilities for the different blocking events are provided for a larger scale elastic optical link.

  18. Relation between elastic modulus and glass softening temperature in the delocalized atom model

    NASA Astrophysics Data System (ADS)

    Sanditov, B. D.; Sangadiev, S. Sh.; Sanditov, D. S.

    2012-09-01

    The ratio of softening temperature (glass transition temperature) to elastic modulus ( T g / E) is mainly determined by the limiting elastic deformation of an interatomic bond, which characterizes the transition of a structural microregion from an elastic into a viscous-flow state. In silicate glasses, this transition is caused by the limiting deformation of directed ionic-covalent Si-O-Si bonds. In the case of amorphous hydrocarbons, it is related to the relatively weak intermolecular bonds between regions in chain macromolecules, and the T g / E ratio is significantly higher than in inorganic glasses. In glassy systems of one class, this ratio turns out to be constant ( T g / E ≈ const), and a linear correlation is detected between softening temperature and elastic modulus, which can be explained in terms of the delocalized atom model. The values of T g / E can be used to classify glasses similarly to the well-known Angell classification according to so-called fragility.

  19. Relation between elastic modulus and glass softening temperature in the delocalized atom model

    SciTech Connect

    Sanditov, B. D.; Sangadiev, S. Sh.; Sanditov, D. S.

    2012-09-15

    The ratio of softening temperature (glass transition temperature) to elastic modulus (T{sub g}/E) is mainly determined by the limiting elastic deformation of an interatomic bond, which characterizes the transition of a structural microregion from an elastic into a viscous-flow state. In silicate glasses, this transition is caused by the limiting deformation of directed ionic-covalent Si-O-Si bonds. In the case of amorphous hydrocarbons, it is related to the relatively weak intermolecular bonds between regions in chain macromolecules, and the T{sub g}/E ratio is significantly higher than in inorganic glasses. In glassy systems of one class, this ratio turns out to be constant (T{sub g}/E Almost-Equal-To const), and a linear correlation is detected between softening temperature and elastic modulus, which can be explained in terms of the delocalized atom model. The values of T{sub g}/E can be used to classify glasses similarly to the well-known Angell classification according to so-called fragility.

  20. Modeling proton and alpha elastic scattering in liquid water in Geant4-DNA

    NASA Astrophysics Data System (ADS)

    Tran, H. N.; El Bitar, Z.; Champion, C.; Karamitros, M.; Bernal, M. A.; Francis, Z.; Ivantchenko, V.; Lee, S. B.; Shin, J. I.; Incerti, S.

    2015-01-01

    Elastic scattering of protons and alpha (α) particles by water molecules cannot be neglected at low incident energies. However, this physical process is currently not available in the "Geant4-DNA" extension of the Geant4 Monte Carlo simulation toolkit. In this work, we report on theoretical differential and integral cross sections of the elastic scattering process for 100 eV-1 MeV incident protons and for 100 eV-10 MeV incident α particles in liquid water. The calculations are performed within the classical framework described by Everhart et al., Ziegler et al. and by the ICRU 49 Report. Then, we propose an implementation of the corresponding classes into the Geant4-DNA toolkit for modeling the elastic scattering of protons and α particles. Stopping powers as well as ranges are also reported. Then, it clearly appears that the account of the elastic scattering process in the slowing-down of the charged particle improves the agreement with the existing data in particular with the ICRU recommendations.

  1. Small oscillations of a pressurized, elastic, spherical shell: Model and experiments

    NASA Astrophysics Data System (ADS)

    Kuo, K. A.; Hunt, H. E. M.; Lister, John R.

    2015-12-01

    This paper presents a model for the small oscillations of a pressurized, elastic, spherical shell subject to internal and external fluid effects. The shell has three features: a pressure difference across the skin; a thin, tensioned shell; and a double curved interfacial surface. An analytical solution for the natural frequencies and mode shapes, incorporating the inertia both of the shell and the surrounding fluids, is derived. Two key parameters that quantify the effect of pre-stress and fluid inertia on the shell's behaviour are identified. When the skin tension is set to zero and the inertial effects of the fluid are removed, the results converge to the analytical solution for an elastic spherical shell, and when the skin elasticity is neglected, the results converge to the constant-tension solution of a bubble. The analytical solution is used to predict the natural frequencies of a small balloon, based on a value for the elastic modulus that is determined using inflation measurements. These predictions are compared to experimental measurements of balloon vibrations using impact-hammer testing, and good agreement is seen.

  2. Network model of bilateral power markets based on complex networks

    NASA Astrophysics Data System (ADS)

    Wu, Yang; Liu, Junyong; Li, Furong; Yan, Zhanxin; Zhang, Li

    2014-06-01

    The bilateral power transaction (BPT) mode becomes a typical market organization with the restructuring of electric power industry, the proper model which could capture its characteristics is in urgent need. However, the model is lacking because of this market organization's complexity. As a promising approach to modeling complex systems, complex networks could provide a sound theoretical framework for developing proper simulation model. In this paper, a complex network model of the BPT market is proposed. In this model, price advantage mechanism is a precondition. Unlike other general commodity transactions, both of the financial layer and the physical layer are considered in the model. Through simulation analysis, the feasibility and validity of the model are verified. At same time, some typical statistical features of BPT network are identified. Namely, the degree distribution follows the power law, the clustering coefficient is low and the average path length is a bit long. Moreover, the topological stability of the BPT network is tested. The results show that the network displays a topological robustness to random market member's failures while it is fragile against deliberate attacks, and the network could resist cascading failure to some extent. These features are helpful for making decisions and risk management in BPT markets.

  3. Three-parameter-based streamflow elasticity model: application to MOPEX basins in the USA at annual and seasonal scales

    NASA Astrophysics Data System (ADS)

    Konapala, Goutam; Mishra, Ashok K.

    2016-07-01

    We present a three-parameter streamflow elasticity model as a function of precipitation, potential evaporation, and change in groundwater storage applicable at both seasonal and annual scales. The model was applied to 245 Model Parameter Estimation Experiment (MOPEX) basins spread across the continental USA. The analysis of the modified equation at annual and seasonal scales indicated that the groundwater and surface water storage change contributes significantly to the streamflow elasticity. Overall, in case of annual as well as seasonal water balances, precipitation has higher elasticity values when compared to both potential evapotranspiration and storage changes. The streamflow elasticities show significant nonlinear associations with the climate conditions of the catchments indicating a complex interplay between elasticities and climate variables with substantial seasonal variations.

  4. If Cell Mechanics Can Be Described by Elastic Modulus: Study of Different Models and Probes Used in Indentation Experiments

    PubMed Central

    Guz, Nataliia; Dokukin, Maxim; Kalaparthi, Vivekanand; Sokolov, Igor

    2014-01-01

    Here we investigated the question whether cells, being highly heterogeneous objects, could be described with the elastic modulus (effective Young’s modulus) in a self-consistent way. We performed a comparative analysis of the elastic modulus derived from the indentation data obtained with atomic force microscopy (AFM) on human cervical epithelial cells (both normal and cancerous). Both sharp (cone) and dull (2500-nm radius sphere) AFM probes were used. The indentation data were processed through different elastic models. The cell was approximated as a homogeneous elastic medium that had either 1), smooth hemispherical boundary (Hertz/Sneddon models) or 2), the boundary covered with a layer of glycocalyx and membrane protrusions (“brush” models). Consistency of these approximations was investigated. Specifically, we tested the independence of the elastic modulus of the indentation depth, which is assumed in these models. We demonstrated that only one model showed consistency in treating cells as a homogeneous elastic medium, namely, the brush model, when processing the indentation data collected with the dull AFM probe. The elastic modulus demonstrated strong depth dependence in all models: Hertz/Sneddon models (no brush taken into account), and when the brush model was applied to the data collected with sharp conical probes. We conclude that it is possible to describe the elastic properties of the cell body by means of an effective elastic modulus, used in a self-consistent way, when using the brush model to analyze data collected with a dull AFM probe. The nature of these results is discussed. PMID:25099796

  5. Laplace-domain waveform modeling and inversion for the 3D acoustic-elastic coupled media

    NASA Astrophysics Data System (ADS)

    Shin, Jungkyun; Shin, Changsoo; Calandra, Henri

    2016-06-01

    Laplace-domain waveform inversion reconstructs long-wavelength subsurface models by using the zero-frequency component of damped seismic signals. Despite the computational advantages of Laplace-domain waveform inversion over conventional frequency-domain waveform inversion, an acoustic assumption and an iterative matrix solver have been used to invert 3D marine datasets to mitigate the intensive computing cost. In this study, we develop a Laplace-domain waveform modeling and inversion algorithm for 3D acoustic-elastic coupled media by using a parallel sparse direct solver library (MUltifrontal Massively Parallel Solver, MUMPS). We precisely simulate a real marine environment by coupling the 3D acoustic and elastic wave equations with the proper boundary condition at the fluid-solid interface. In addition, we can extract the elastic properties of the Earth below the sea bottom from the recorded acoustic pressure datasets. As a matrix solver, the parallel sparse direct solver is used to factorize the non-symmetric impedance matrix in a distributed memory architecture and rapidly solve the wave field for a number of shots by using the lower and upper matrix factors. Using both synthetic datasets and real datasets obtained by a 3D wide azimuth survey, the long-wavelength component of the P-wave and S-wave velocity models is reconstructed and the proposed modeling and inversion algorithm are verified. A cluster of 80 CPU cores is used for this study.

  6. Improved free-surface expression for frequency-domain elastic optimal mixed-grid modeling

    NASA Astrophysics Data System (ADS)

    Cao, Jian; Chen, Jing-Bo; Dai, Meng-Xue

    2016-07-01

    An accurate and efficient forward modeling is the foundation of full-waveform inversion (FWI). In elastic wave modeling, one of the key problems is how to deal with the free-surface boundary condition appropriately. For the representation of the free-surface boundary condition, conventional displacement-based approaches and staggered-grid approaches are often used in time-domain. In frequency-domain, considering the saving of storage and CPU time, we integrate the idea of physical parameter-modified staggered-grid approach in time-domain with an elastic optimal mixed-grid modeling scheme to design an improved parameter-modified free-surface expression. Accuracy analysis shows that an elastic optimal mixed-grid modeling scheme using the parameter-modified free-surface expression can provide more accurate solutions with only 4 grid points per smallest shear wavelength than conventional displacement-based approaches and is stable for most Poisson ratios. Besides, it also yields smaller condition number of the resulting impedance matrix than conventional displacement-based approaches in laterally varying complex media. These advantages reveal great potential of this free-surface expression in big-data practical application.

  7. Position and torque tracking: series elastic actuation versus model-based-controlled hydraulic actuation.

    PubMed

    Otten, Alexander; van Vuuren, Wieke; Stienen, Arno; van Asseldonk, Edwin; Schouten, Alfred; van der Kooij, Herman

    2011-01-01

    Robotics used for diagnostic measurements on, e.g. stroke survivors, require actuators that are both stiff and compliant. Stiffness is required for identification purposes, and compliance to compensate for the robots dynamics, so that the subject can move freely while using the robot. A hydraulic actuator can act as a position (stiff) or a torque (compliant) actuator. The drawback of a hydraulic actuator is that it behaves nonlinear. This article examines two methods for controlling a nonlinear hydraulic actuator. The first method that is often applied uses an elastic element (i.e. spring) connected in series with the hydraulic actuator so that the torque can be measured as the deflection of the spring. This torque measurement is used for proportional integral control. The second method of control uses the inverse of the model of the actuator as a linearizing controller. Both methods are compared using simulation results. The controller designed for the series elastic hydraulic actuator is faster to implement, but only shows good performance for the working range for which the controller is designed due to the systems nonlinear behavior. The elastic element is a limiting factor when designing a position controller due to its low torsional stiffness. The model-based controller linearizes the nonlinear system and shows good performance when used for torque and position control. Implementing the model-based controller does require building and validating of the detailed model. PMID:22275654

  8. Models for Gas Hydrate-Bearing Sediments Inferred from Hydraulic Permeability and Elastic Velocities

    USGS Publications Warehouse

    Lee, Myung W.

    2008-01-01

    Elastic velocities and hydraulic permeability of gas hydrate-bearing sediments strongly depend on how gas hydrate accumulates in pore spaces and various gas hydrate accumulation models are proposed to predict physical property changes due to gas hydrate concentrations. Elastic velocities and permeability predicted from a cementation model differ noticeably from those from a pore-filling model. A nuclear magnetic resonance (NMR) log provides in-situ water-filled porosity and hydraulic permeability of gas hydrate-bearing sediments. To test the two competing models, the NMR log along with conventional logs such as velocity and resistivity logs acquired at the Mallik 5L-38 well, Mackenzie Delta, Canada, were analyzed. When the clay content is less than about 12 percent, the NMR porosity is 'accurate' and the gas hydrate concentrations from the NMR log are comparable to those estimated from an electrical resistivity log. The variation of elastic velocities and relative permeability with respect to the gas hydrate concentration indicates that the dominant effect of gas hydrate in the pore space is the pore-filling characteristic.

  9. Finite Element Prediction of Sheet Forming Defects Using Elastic-Plastic, Damage and Localization Models

    NASA Astrophysics Data System (ADS)

    Haddag, Badis; Abed-Meraim, Farid; Balan, Tudor

    2007-05-01

    In this work, an advanced anisotropic elastic-plasticity model is combined with a damage model and a strain localization criterion in the aim to describe accurately the mechanical behavior of sheet metals. Large strain, fully three-dimensional, implicit time integration algorithms are developed for this model and implemented in the finite element code Abaqus. The resulting code is used to predict the strain localization limits as well as the springback after forming of sheet steels. The impact of strain-path dependent hardening models on the limit strains and on the amount of springback is addressed.

  10. A thermomechanical anisotropic model for shock loading of elastic-plastic and elastic-viscoplastic materials with application to jointed rock

    NASA Astrophysics Data System (ADS)

    Rubin, M. B.; Vorobiev, O.; Vitali, E.

    2016-07-01

    A large deformation thermomechanical model is developed for shock loading of a material that can exhibit elastic and inelastic anisotropy. Use is made of evolution equations for a triad of microstructural vectors mathbf{m}i (hbox {i}=1,2,3) which model elastic deformations and directions of anisotropy. Specific constitutive equations are presented for a material with orthotropic elastic response. The rate of inelasticity depends on an orthotropic yield function that can be used to model weak fault planes with failure in shear and which exhibits a smooth transition to isotropic response at high compression. Moreover, a robust, strongly objective numerical algorithm is proposed for both rate-independent and rate-dependent response. The predictions of the continuum model are examined by comparison with exact steady-state solutions. Also, the constitutive equations are used to obtain a simplified continuum model of jointed rock which is compared with high fidelity numerical solutions that model a persistent system of joints explicitly in the rock medium.

  11. Modeling, Analysis, and Control of a Hypersonic Vehicle with Significant Aero-Thermo-Elastic-Propulsion Interactions: Elastic, Thermal and Mass Uncertainty

    NASA Astrophysics Data System (ADS)

    Khatri, Jaidev

    This thesis examines themodeling, analysis, and control system design issues for scramjet powered hypersonic vehicles. A nonlinear three degrees of freedom longitudinal model which includes aero-propulsion-elasticity effects was used for all analyses. This model is based upon classical compressible flow and Euler-Bernouli structural concepts. Higher fidelity computational fluid dynamics and finite element methods are needed for more precise intermediate and final evaluations. The methods presented within this thesis were shown to be useful for guiding initial control relevant design. The model was used to examine the vehicle's static and dynamic characteristics over the vehicle's trimmable region. The vehicle has significant longitudinal coupling between the fuel equivalency ratio (FER) and the flight path angle (FPA). For control system design, a two-input two-output plant (FER - elevator to speed-FPA) with 11 states (including 3 flexible modes) was used. Velocity, FPA, and pitch were assumed to be available for feedback. Aerodynamic heat modeling and design for the assumed TPS was incorporated to original Bolender's model to study the change in static and dynamic properties. De-centralized control stability, feasibility and limitations issues were dealt with the change in TPS elasticity, mass and physical dimension. The impact of elasticity due to TPS mass, TPS physical dimension as well as prolonged heating was also analyzed to understand performance limitations of de-centralized control designed for nominal model.

  12. Elastic and Piezoelectric Properties of Boron Nitride Nanotube Composites. Part II; Finite Element Model

    NASA Technical Reports Server (NTRS)

    Kim, H. Alicia; Hardie, Robert; Yamakov, Vesselin; Park, Cheol

    2015-01-01

    This paper is the second part of a two-part series where the first part presents a molecular dynamics model of a single Boron Nitride Nanotube (BNNT) and this paper scales up to multiple BNNTs in a polymer matrix. This paper presents finite element (FE) models to investigate the effective elastic and piezoelectric properties of (BNNT) nanocomposites. The nanocomposites studied in this paper are thin films of polymer matrix with aligned co-planar BNNTs. The FE modelling approach provides a computationally efficient way to gain an understanding of the material properties. We examine several FE models to identify the most suitable models and investigate the effective properties with respect to the BNNT volume fraction and the number of nanotube walls. The FE models are constructed to represent aligned and randomly distributed BNNTs in a matrix of resin using 2D and 3D hollow and 3D filled cylinders. The homogenisation approach is employed to determine the overall elastic and piezoelectric constants for a range of volume fractions. These models are compared with an analytical model based on Mori-Tanaka formulation suitable for finite length cylindrical inclusions. The model applies to primarily single-wall BNNTs but is also extended to multi-wall BNNTs, for which preliminary results will be presented. Results from the Part 1 of this series can help to establish a constitutive relationship for input into the finite element model to enable the modeling of multiple BNNTs in a polymer matrix.

  13. Phase field modelling of strain induced crystal growth in an elastic matrix.

    PubMed

    Laghmach, Rabia; Candau, Nicolas; Chazeau, Laurent; Munch, Etienne; Biben, Thierry

    2015-06-28

    When a crystal phase grows in an amorphous matrix, such as a crystallisable elastomer, containing cross-links and/or entanglements, these "topological constraints" need to be pushed away from the crystal phase to allow further crystallization. The accumulation of these topological constraints in the vicinity of the crystal interface may store elastic energy and affect the phase transition. To evaluate the consequences of such mechanism, we introduce a phase field model based on the Flory theory of entropic elasticity. We show that the growth process is indeed sensibly affected, in particular, an exponential increase of the surface energy with the displacement of the interface is induced. This explains the formation of stable nano-crystallites as it is observed in the Strain Induced Crystallization (SIC) of natural rubber. Although simple, the model developed here is able to account for many interesting features of SIC, for instance, the crystallite shapes and their sizes which depend on the applied deformation. PMID:26133455

  14. Plate and butt-weld stresses beyond elastic limit, material and structural modeling

    NASA Technical Reports Server (NTRS)

    Verderaime, V.

    1991-01-01

    Ultimate safety factors of high performance structures depend on stress behavior beyond the elastic limit, a region not too well understood. An analytical modeling approach was developed to gain fundamental insights into inelastic responses of simple structural elements. Nonlinear material properties were expressed in engineering stresses and strains variables and combined with strength of material stress and strain equations similar to numerical piece-wise linear method. Integrations are continuous which allows for more detailed solutions. Included with interesting results are the classical combined axial tension and bending load model and the strain gauge conversion to stress beyond the elastic limit. Material discontinuity stress factors in butt-welds were derived. This is a working-type document with analytical methods and results applicable to all industries of high reliability structures.

  15. Model of a thermo-elastic-inelastic process with large deformations and structural changes in material

    NASA Astrophysics Data System (ADS)

    Rogovoi, A. A.

    2015-09-01

    The dependence of a scalar measure of the structural changes occurring in a material under plastic deformation on a plastic strain measure and the dependence of a free energy measure on a structural change measure are constructed using experimental data that allow the expended plastic work to be divided into a latent part and a thermal part. The obtained dependences, kinematic relations, a constitutive equation, and a heat-conduction equation that satisfy the principles of thermodynamics and objectivity are used to construct a model of thermo-elastic-inelastic processes in the presence of finite deformations and structural changes in the material. The model is tested on the problem of temperature changes in the process of adiabatic elastic-plastic compression, which has experimental support.

  16. Phase field modelling of strain induced crystal growth in an elastic matrix

    NASA Astrophysics Data System (ADS)

    Laghmach, Rabia; Candau, Nicolas; Chazeau, Laurent; Munch, Etienne; Biben, Thierry

    2015-06-01

    When a crystal phase grows in an amorphous matrix, such as a crystallisable elastomer, containing cross-links and/or entanglements, these "topological constraints" need to be pushed away from the crystal phase to allow further crystallization. The accumulation of these topological constraints in the vicinity of the crystal interface may store elastic energy and affect the phase transition. To evaluate the consequences of such mechanism, we introduce a phase field model based on the Flory theory of entropic elasticity. We show that the growth process is indeed sensibly affected, in particular, an exponential increase of the surface energy with the displacement of the interface is induced. This explains the formation of stable nano-crystallites as it is observed in the Strain Induced Crystallization (SIC) of natural rubber. Although simple, the model developed here is able to account for many interesting features of SIC, for instance, the crystallite shapes and their sizes which depend on the applied deformation.

  17. How to model wireless mesh networks topology

    NASA Astrophysics Data System (ADS)

    Sanni, M. L.; Hashim, A. A.; Anwar, F.; Ahmed, G. S. M.; Ali, S.

    2013-12-01

    The specification of network connectivity model or topology is the beginning of design and analysis in Computer Network researches. Wireless Mesh Networks is an autonomic network that is dynamically self-organised, self-configured while the mesh nodes establish automatic connectivity with the adjacent nodes in the relay network of wireless backbone routers. Researches in Wireless Mesh Networks range from node deployment to internetworking issues with sensor, Internet and cellular networks. These researches require modelling of relationships and interactions among nodes including technical characteristics of the links while satisfying the architectural requirements of the physical network. However, the existing topology generators model geographic topologies which constitute different architectures, thus may not be suitable in Wireless Mesh Networks scenarios. The existing methods of topology generation are explored, analysed and parameters for their characterisation are identified. Furthermore, an algorithm for the design of Wireless Mesh Networks topology based on square grid model is proposed in this paper. The performance of the topology generated is also evaluated. This research is particularly important in the generation of a close-to-real topology for ensuring relevance of design to the intended network and validity of results obtained in Wireless Mesh Networks researches.

  18. Model Of Neural Network With Creative Dynamics

    NASA Technical Reports Server (NTRS)

    Zak, Michail; Barhen, Jacob

    1993-01-01

    Paper presents analysis of mathematical model of one-neuron/one-synapse neural network featuring coupled activation and learning dynamics and parametrical periodic excitation. Demonstrates self-programming, partly random behavior of suitable designed neural network; believed to be related to spontaneity and creativity of biological neural networks.

  19. Propulsion System Dynamic Modeling of the NASA Supersonic Concept Vehicle for AeroPropulsoServoElasticity

    NASA Technical Reports Server (NTRS)

    Kopasakis, George; Connolly, Joseph W.; Seiel, Jonathan

    2016-01-01

    A summary of the propulsion system modeling under NASA's High Speed Project (HSP) AeroPropulsoServoElasticity (APSE) task is provided with a focus on the propulsion system for the low-boom supersonic configuration developed by Lockheed Martin and referred to as the N+2 configuration. This summary includes details on the effort to date to develop computational models for the various propulsion system components. The objective of this paper is to summarize the model development effort in this task, while providing more detail in the modeling areas that have not been previously published. The purpose of the propulsion system modeling and the overall APSE effort is to develop an integrated dynamic vehicle model to conduct appropriate unsteady analysis of supersonic vehicle performance. This integrated APSE system model concept includes the propulsion system model, and the vehicle structural aerodynamics model. The development to date of such a preliminary integrated model will also be summarized in this report

  20. Propulsion System Dynamic Modeling of the NASA Supersonic Concept Vehicle for AeroPropulsoServoElasticity

    NASA Technical Reports Server (NTRS)

    Kopasakis, George; Connolly, Joseph W.; Seidel, Jonathan

    2014-01-01

    A summary of the propulsion system modeling under NASA's High Speed Project (HSP) AeroPropulsoServoElasticity (APSE) task is provided with a focus on the propulsion system for the lowboom supersonic configuration developed by Lockheed Martin and referred to as the N+2 configuration. This summary includes details on the effort to date to develop computational models for the various propulsion system components. The objective of this paper is to summarize the model development effort in this task, while providing more detail in the modeling areas that have not been previously published. The purpose of the propulsion system modeling and the overall APSE effort is to develop an integrated dynamic vehicle model to conduct appropriate unsteady analysis of supersonic vehicle performance. This integrated APSE system model concept includes the propulsion system model, and the vehicle structural-aerodynamics model. The development to date of such a preliminary integrated model will also be summarized in this report.

  1. A model of human walking energetics with an elastically-suspended load.

    PubMed

    Ackerman, Jeffrey; Seipel, Justin

    2014-06-01

    Elastically-suspended loads have been shown to reduce the peak forces acting on the body while walking with a load when the suspension stiffness and damping are minimized. However, it is not well understood how elastically-suspended loads can affect the energetic cost of walking. Prior work shows that elastically suspending a load can yield either an increase or decrease in the energetic cost of human walking, depending primarily on the suspension stiffness, load, and walking speed. It would be useful to have a simple explanation that reconciles apparent differences in existing data. The objective of this paper is to help explain different energetic outcomes found with experimental load suspension backpacks and to systematically investigate the effect of load suspension parameters on the energetic cost of human walking. A simple two-degree-of-freedom model is used to approximate the energetic cost of human walking with a suspended load. The energetic predictions of the model are consistent with existing experimental data and show how the suspension parameters, load mass, and walking speed can affect the energetic cost of walking. In general, the energetic cost of walking with a load is decreased compared to that of a stiffly-attached load when the natural frequency of a load suspension is tuned significantly below the resonant walking frequency. The model also shows that a compliant load suspension is more effective in reducing the energetic cost of walking with low suspension damping, high load mass, and fast walking speed. This simple model could improve our understanding of how elastic load-carrying devices affect the energetic cost of walking with a load. PMID:24709566

  2. Analytical applications and effective properties of a second gradient isotropic elastic material model

    NASA Astrophysics Data System (ADS)

    Enakoutsa, Koffi

    2014-09-01

    Recently, the works by Toupin, Mindlin, Sokolowski and Germain have been developed following two research streams. In the first one, higher-order gradient continuum models were developed based on the Cauchy tetrahedron argument (see, e.g., dell'Isola and Seppecher in Comptes Rendus de l Academie de Sciences 17 Serie IIb: Mecanique, Physique, Chimie, Astronomie 321:303-308, 1995, Meccanica 32:33-52 1997, Zeitschrift fr Angewandte Mathematik und Physik 63(6):1119-1141, 2012). In the second one, the structure of higher-order gradient models is developed with a view to the applications. In particular in the model of linear isotropic solids proposed by Dell'Isola, Sciarra and Vidoli (DSV), the main constitutive equation is obtained for the case of second gradient models. This model introduces in addition to the two well-known Lame's elastic constants five constitutive constants. The practical applications of this model remain in its infancy since the issue of determining the new moduli it introduces is not yet completely addressed. Also, analytical solutions of simple boundary value problems that can be helpful to grasp some of the physical foundations of this model are missing. This paper aims to address these two issues by providing the analytical solutions for two model problems, a spherical shell subjected to axisymmetric loading conditions and the circular bending of a beam in plane strain, both the beam and the shell obeying the DSV second gradient isotropic elastic model. The solution of the circular bending of a beam has served to grasp some of the physical soundness of the model. A framework based on homogenization under inhomogeneous boundary conditions is also suggested to determine the unknown constitutive constants, which are provided in the particular case of elastic porous heterogeneous materials.

  3. Stochastic multiscale modelling of cortical bone elasticity based on high-resolution imaging.

    PubMed

    Sansalone, Vittorio; Gagliardi, Davide; Desceliers, Christophe; Bousson, Valérie; Laredo, Jean-Denis; Peyrin, Françoise; Haïat, Guillaume; Naili, Salah

    2016-02-01

    Accurate and reliable assessment of bone quality requires predictive methods which could probe bone microstructure and provide information on bone mechanical properties. Multiscale modelling and simulation represent a fast and powerful way to predict bone mechanical properties based on experimental information on bone microstructure as obtained through X-ray-based methods. However, technical limitations of experimental devices used to inspect bone microstructure may produce blurry data, especially in in vivo conditions. Uncertainties affecting the experimental data (input) may question the reliability of the results predicted by the model (output). Since input data are uncertain, deterministic approaches are limited and new modelling paradigms are required. In this paper, a novel stochastic multiscale model is developed to estimate the elastic properties of bone while taking into account uncertainties on bone composition. Effective elastic properties of cortical bone tissue were computed using a multiscale model based on continuum micromechanics. Volume fractions of bone components (collagen, mineral, and water) were considered as random variables whose probabilistic description was built using the maximum entropy principle. The relevance of this approach was proved by analysing a human bone sample taken from the inferior femoral neck. The sample was imaged using synchrotron radiation micro-computed tomography. 3-D distributions of Haversian porosity and tissue mineral density extracted from these images supplied the experimental information needed to build the stochastic models of the volume fractions. Thus, the stochastic multiscale model provided reliable statistical information (such as mean values and confidence intervals) on bone elastic properties at the tissue scale. Moreover, the existence of a simpler "nominal model", accounting for the main features of the stochastic model, was investigated. It was shown that such a model does exist, and its relevance

  4. Analytical applications and effective properties of a second gradient isotropic elastic material model

    NASA Astrophysics Data System (ADS)

    Enakoutsa, Koffi

    2015-06-01

    Recently, the works by Toupin, Mindlin, Sokolowski and Germain have been developed following two research streams. In the first one, higher-order gradient continuum models were developed based on the Cauchy tetrahedron argument (see, e.g., dell'Isola and Seppecher in Comptes Rendus de l Academie de Sciences 17 Serie IIb: Mecanique, Physique, Chimie, Astronomie 321:303-308, 1995, Meccanica 32:33-52 1997, Zeitschrift fr Angewandte Mathematik und Physik 63(6):1119-1141, 2012). In the second one, the structure of higher-order gradient models is developed with a view to the applications. In particular in the model of linear isotropic solids proposed by Dell'Isola, Sciarra and Vidoli (DSV), the main constitutive equation is obtained for the case of second gradient models. This model introduces in addition to the two well-known Lame's elastic constants five constitutive constants. The practical applications of this model remain in its infancy since the issue of determining the new moduli it introduces is not yet completely addressed. Also, analytical solutions of simple boundary value problems that can be helpful to grasp some of the physical foundations of this model are missing. This paper aims to address these two issues by providing the analytical solutions for two model problems, a spherical shell subjected to axisymmetric loading conditions and the circular bending of a beam in plane strain, both the beam and the shell obeying the DSV second gradient isotropic elastic model. The solution of the circular bending of a beam has served to grasp some of the physical soundness of the model. A framework based on homogenization under inhomogeneous boundary conditions is also suggested to determine the unknown constitutive constants, which are provided in the particular case of elastic porous heterogeneous materials.

  5. Finite difference elastic wave modeling with an irregular free surface using ADER scheme

    NASA Astrophysics Data System (ADS)

    Almuhaidib, Abdulaziz M.; Nafi Toksöz, M.

    2015-06-01

    In numerical modeling of seismic wave propagation in the earth, we encounter two important issues: the free surface and the topography of the surface (i.e. irregularities). In this study, we develop a 2D finite difference solver for the elastic wave equation that combines a 4th- order ADER scheme (Arbitrary high-order accuracy using DERivatives), which is widely used in aeroacoustics, with the characteristic variable method at the free surface boundary. The idea is to treat the free surface boundary explicitly by using ghost values of the solution for points beyond the free surface to impose the physical boundary condition. The method is based on the velocity-stress formulation. The ultimate goal is to develop a numerical solver for the elastic wave equation that is stable, accurate and computationally efficient. The solver treats smooth arbitrary-shaped boundaries as simple plane boundaries. The computational cost added by treating the topography is negligible compared to flat free surface because only a small number of grid points near the boundary need to be computed. In the presence of topography, using 10 grid points per shortest shear-wavelength, the solver yields accurate results. Benchmark numerical tests using several complex models that are solved by our method and other independent accurate methods show an excellent agreement, confirming the validity of the method for modeling elastic waves with an irregular free surface.

  6. Multiple scale model for cell migration in monolayers: Elastic mismatch between cells enhances motility.

    PubMed

    Palmieri, Benoit; Bresler, Yony; Wirtz, Denis; Grant, Martin

    2015-01-01

    We propose a multiscale model for monolayer of motile cells that comprise normal and cancer cells. In the model, the two types of cells have identical properties except for their elasticity; cancer cells are softer and normal cells are stiffer. The goal is to isolate the role of elasticity mismatch on the migration potential of cancer cells in the absence of other contributions that are present in real cells. The methodology is based on a phase-field description where each cell is modeled as a highly-deformable self-propelled droplet. We simulated two types of nearly confluent monolayers. One contains a single cancer cell in a layer of normal cells and the other contains normal cells only. The simulation results demonstrate that elasticity mismatch alone is sufficient to increase the motility of the cancer cell significantly. Further, the trajectory of the cancer cell is decorated by several speed "bursts" where the cancer cell quickly relaxes from a largely deformed shape and consequently increases its translational motion. The increased motility and the amplitude and frequency of the bursts are in qualitative agreement with recent experiments. PMID:26134134

  7. Random polycrystals of grains containing cracks: Model ofquasistatic elastic behavior for fractured systems

    SciTech Connect

    Berryman, James G.; Grechka, Vladimir

    2006-07-08

    A model study on fractured systems was performed using aconcept that treats isotropic cracked systems as ensembles of crackedgrains by analogy to isotropic polycrystalline elastic media. Theapproach has two advantages: (a) Averaging performed is ensembleaveraging, thus avoiding the criticism legitimately leveled at mosteffective medium theories of quasistatic elastic behavior for crackedmedia based on volume concentrations of inclusions. Since crack effectsare largely independent of the volume they occupy in the composite, sucha non-volume-based method offers an appealingly simple modelingalternative. (b) The second advantage is that both polycrystals andfractured media are stiffer than might otherwise be expected, due tonatural bridging effects of the strong components. These same effectshave also often been interpreted as crack-crack screening inhigh-crack-density fractured media, but there is no inherent conflictbetween these two interpretations of this phenomenon. Results of thestudy are somewhat mixed. The spread in elastic constants observed in aset of numerical experiments is found to be very comparable to the spreadin values contained between the Reuss and Voigt bounds for thepolycrystal model. However, computed Hashin-Shtrikman bounds are much tootight to be in agreement with the numerical data, showing thatpolycrystals of cracked grains tend to violate some implicit assumptionsof the Hashin-Shtrikman bounding approach. However, the self-consistentestimates obtained for the random polycrystal model are nevertheless verygood estimators of the observed average behavior.

  8. Time reversed elastic nonlinearity diagnostic applied to mock osseointegration monitoring applying two experimental models.

    PubMed

    Rivière, Jacques; Haupert, Sylvain; Laugier, Pascal; Ulrich, T J; Le Bas, Pierre-Yves; Johnson, Paul A

    2012-03-01

    This study broadens vibration-like techniques developed for osseointegration monitoring to the nonlinear field. The time reversed elastic nonlinearity diagnostic is applied to two mock models. The first one consists of tightening a dental implant at different torques in a mock cortical bone; the second one allows one to follow glue curing at the interface between a dental implant and a mock jaw. Energy is focused near the implant interface using the time reversal technique. Two nonlinear procedures termed pulse inversion and the scaling subtraction method, already used successfully in other fields such as contrast agents and material characterization, are employed. These two procedures are compared for both models. The results suggest that nonlinear elasticity can provide new information regarding the interface, complementary to the linear wave velocity and attenuation. The curing experiment exhibits an overall low nonlinear level due to the fact that the glue significantly damps elastic nonlinearity at the interface. In contrast, the torque experiment shows strong nonlinearities at the focus time. Consequently, a parallel analysis of these models, both only partially reflecting a real case, enables one to envisage future in vivo experiments. PMID:22423689

  9. Implementation of the Kirchhoff integral for elastic waves in staggered-grid modeling schemes

    SciTech Connect

    Mittet, R. )

    1994-12-01

    Implementation of boundary conditions in finite-difference schemes is not straightforward for the elastic wave equation if a staggered grid formulation is used. Reverse time migration of VSP data requires a proper description of the recording surface so as not to excite false P- and S-waves. Such contributions may cause artifacts in the imaging procedure. The boundary conditions for the elastic stress tensor can be implemented numerically in a staggered coarse grid modeling scheme by using band-limited spatial delta-functions and band-limited first-order derivatives of these spatial delta-functions. A representation theorem for elastic waves is derived to test the implementation of the spatial part of the boundary condition. The implementation is tested in a 2-D numerical experiment for a closed, but curved, boundary S enclosing a volume V. The test condition is that within the volume V, the difference between the forward modeled field and the retropropagated field should be equal to zero. Both P- and S-waves are properly recovered in a 2-D reverse time modeling example. The numerical artifacts related to the proposed spatial approximation of the boundary condition are found to be negligible.

  10. The elastic properties of woven polymeric fabric

    SciTech Connect

    Warren, W.E. )

    1989-01-01

    The in-plane linear elastic constants of woven fabric are determined in terms of the specific fabric microstructure. The fabric is assumed to be a spatially periodic interlaced network of orthogonal yarns and the individual yarns are modeled as extensible elastica. These results indicate that a significant coupling of bending and stretching effects occurs during deformation. Results of this theoretical analysis compare favorable with measured in-plane elastic constants for Vincel yarn fabrics. 17 refs., 2 figs., 1 tab.

  11. Modeling data throughput on communication networks

    SciTech Connect

    Eldridge, J.M.

    1993-11-01

    New challenges in high performance computing and communications are driving the need for fast, geographically distributed networks. Applications such as modeling physical phenomena, interactive visualization, large data set transfers, and distributed supercomputing require high performance networking [St89][Ra92][Ca92]. One measure of a communication network`s performance is the time it takes to complete a task -- such as transferring a data file or displaying a graphics image on a remote monitor. Throughput, defined as the ratio of the number of useful data bits transmitted per the time required to transmit those bits, is a useful gauge of how well a communication system meets this performance measure. This paper develops and describes an analytical model of throughput. The model is a tool network designers can use to predict network throughput. It also provides insight into those parts of the network that act as a performance bottleneck.

  12. Queuing theory models for computer networks

    NASA Technical Reports Server (NTRS)

    Galant, David C.

    1989-01-01

    A set of simple queuing theory models which can model the average response of a network of computers to a given traffic load has been implemented using a spreadsheet. The impact of variations in traffic patterns and intensities, channel capacities, and message protocols can be assessed using them because of the lack of fine detail in the network traffic rates, traffic patterns, and the hardware used to implement the networks. A sample use of the models applied to a realistic problem is included in appendix A. Appendix B provides a glossary of terms used in this paper. This Ames Research Center computer communication network is an evolving network of local area networks (LANs) connected via gateways and high-speed backbone communication channels. Intelligent planning of expansion and improvement requires understanding the behavior of the individual LANs as well as the collection of networks as a whole.

  13. Active patterning and asymmetric transport in a model actomyosin network

    SciTech Connect

    Wang, Shenshen; Wolynes, Peter G.

    2013-12-21

    Cytoskeletal networks, which are essentially motor-filament assemblies, play a major role in many developmental processes involving structural remodeling and shape changes. These are achieved by nonequilibrium self-organization processes that generate functional patterns and drive intracellular transport. We construct a minimal physical model that incorporates the coupling between nonlinear elastic responses of individual filaments and force-dependent motor action. By performing stochastic simulations we show that the interplay of motor processes, described as driving anti-correlated motion of the network vertices, and the network connectivity, which determines the percolation character of the structure, can indeed capture the dynamical and structural cooperativity which gives rise to diverse patterns observed experimentally. The buckling instability of individual filaments is found to play a key role in localizing collapse events due to local force imbalance. Motor-driven buckling-induced node aggregation provides a dynamic mechanism that stabilizes the two-dimensional patterns below the apparent static percolation limit. Coordinated motor action is also shown to suppress random thermal noise on large time scales, the two-dimensional configuration that the system starts with thus remaining planar during the structural development. By carrying out similar simulations on a three-dimensional anchored network, we find that the myosin-driven isotropic contraction of a well-connected actin network, when combined with mechanical anchoring that confers directionality to the collective motion, may represent a novel mechanism of intracellular transport, as revealed by chromosome translocation in the starfish oocyte.

  14. Active patterning and asymmetric transport in a model actomyosin network

    NASA Astrophysics Data System (ADS)

    Wang, Shenshen; Wolynes, Peter G.

    2013-12-01

    Cytoskeletal networks, which are essentially motor-filament assemblies, play a major role in many developmental processes involving structural remodeling and shape changes. These are achieved by nonequilibrium self-organization processes that generate functional patterns and drive intracellular transport. We construct a minimal physical model that incorporates the coupling between nonlinear elastic responses of individual filaments and force-dependent motor action. By performing stochastic simulations we show that the interplay of motor processes, described as driving anti-correlated motion of the network vertices, and the network connectivity, which determines the percolation character of the structure, can indeed capture the dynamical and structural cooperativity which gives rise to diverse patterns observed experimentally. The buckling instability of individual filaments is found to play a key role in localizing collapse events due to local force imbalance. Motor-driven buckling-induced node aggregation provides a dynamic mechanism that stabilizes the two-dimensional patterns below the apparent static percolation limit. Coordinated motor action is also shown to suppress random thermal noise on large time scales, the two-dimensional configuration that the system starts with thus remaining planar during the structural development. By carrying out similar simulations on a three-dimensional anchored network, we find that the myosin-driven isotropic contraction of a well-connected actin network, when combined with mechanical anchoring that confers directionality to the collective motion, may represent a novel mechanism of intracellular transport, as revealed by chromosome translocation in the starfish oocyte.

  15. Modeling static and dynamic thermography of the human breast under elastic deformation

    NASA Astrophysics Data System (ADS)

    Jiang, Li; Zhan, Wang; Loew, Murray H.

    2011-01-01

    An abnormal thermogram has been shown to be a reliable indicator of increased risk of breast cancer. Numerical modeling techniques for thermography are proposed to quantify the complex relationships between the breast thermal behaviors and the underlying physiological/pathological conditions. Previous thermal modeling techniques did not account for gravity-induced elastic deformation arising from various body postures, nor did they suggest that a dynamic thermal procedure may be used to enhance clinical diagnosis. In this paper, 3D finite element method (FEM)-based thermal and elastic modeling techniques are developed to characterize comprehensively both the thermal and elastic properties of normal and tumorous breast tissues during static and dynamic thermography. In the steady state, gravity-induced breast deformation is found to cause an upper-lower asymmetric surface temperature contrast for sitting/standing up body posture, even though all the thermal and elastic properties are assumed uniform. Additionally, the tumor-induced surface temperature alterations are found to be caused primarily by shallow tumors and to be less sensitive to tumor size than to tumor depth. In the dynamic state, the breast exhibits distinctive temporal patterns that are associated with distinct thermal events: cold stress and thermal recovery induced by changes in the ambient temperature. Specifically, the tumor-induced thermal contrast shows an opposite initial change and delayed peak as compared with the deformation-induced thermal contrast. These findings are expected to provide a stronger foundation for, and greater specificity and precision in, thermographic diagnosis, and treatment of breast cancer.

  16. The elastic precursor behavior of tantalum under dynamic loading, its implications and modeling.

    SciTech Connect

    Ding, Jow-Lian

    2010-03-01

    When elastic-plastic materials, such as metals, are subjected to moderately high strain rates or dynamic loadings, the plastic stress wave trails behind the elastic wave because of its slower wave speed. Due to the inherent time-dependent nature of the plastic deformation, the elastic precursor generally loads the material to a metastable elastic state at a stres level that is higher than the static strength of the material. This metastable state gradually relaxes to the equilibrium state and the relaxation results in the so-called precursor decay. In a recent work by Asay et al. (J. Appl. Phys., 2009), the inelastic response of annealed and cold-rolled pure polycrystalline tantalum at intermediate strain rates ({approx} 106/sec) was experimentally characterized with ramp wave loading. It was found that the precursor of the annealed tantalum showed little decay over a propagation distance of 6 mm even though the peak precursor stress was well above the static strength of the mateiral. The precursor for the cold-rolled sample was more dispersive and did not exhibit the characteristics depicted by the annealed samples. In this study, a constitutive model based on the concept of dislocation motion and generation was developed to gain insights into this somewhat unusual precursor behavior, particularly for the annealed samples, and the possible underlying deformation mechanisms for tantalum. Despite its simplicity, the model worked quite well for both the annealed and cold-rolled materials. The tantalum studied here essentially exhibits strong rate sensitivity and this behavior is modeled through the low dislocation density and the strong stress dependence of the dislocation velocity. Both of these contributions may be related to the low mobility of the screw dislocations in bcc metals. This low mobility may result from its extended, three-dimensional core structure.

  17. A time-invariant visco-elastic windkessel model relating blood flow and blood volume.

    PubMed

    Zheng, Ying; Mayhew, John

    2009-10-01

    The difference between the rate of change of cerebral blood volume (CBV) and cerebral blood flow (CBF) following stimulation is thought to be due to circumferential stress relaxation in veins (Mandeville, J.B., Marota, J.J.A., Ayata, C., Zaharchuk, G., Moskowitz, M.A., Rosen, B.R., Weisskoff, R.M., 1999. Evidence of a cerebrovascular postarteriole windkessel with delayed compliance. J. Cereb. Blood Flow Metab. 19, 679-689). In this paper we explore the visco-elastic properties of blood vessels, and present a dynamic model relating changes in CBF to changes in CBV. We refer to this model as the visco-elastic windkessel (VW) model. A novel feature of this model is that the parameter characterising the pressure-volume relationship of blood vessels is treated as a state variable dependent on the rate of change of CBV, producing hysteresis in the pressure-volume space during vessel dilation and contraction. The VW model is nonlinear time-invariant, and is able to predict the observed differences between the time series of CBV and that of CBF measurements following changes in neural activity. Like the windkessel model derived by Mandeville, J.B., Marota, J.J.A., Ayata, C., Zaharchuk, G., Moskowitz, M.A., Rosen, B.R., Weisskoff, R.M., 1999. Evidence of a cerebrovascular postarteriole windkessel with delayed compliance. J. Cereb. Blood Flow Metab. 19, 679-689, the VW model is primarily a model of haemodynamic changes in the venous compartment. The VW model is demonstrated to have the following characteristics typical of visco-elastic materials: (1) hysteresis, (2) creep, and (3) stress relaxation, hence it provides a unified model of the visco-elastic properties of the vasculature. The model will not only contribute to the interpretation of the Blood Oxygen Level Dependent (BOLD) signals from functional Magnetic Resonance Imaging (fMRI) experiments, but also find applications in the study and modelling of the brain vasculature and the haemodynamics of circulatory and

  18. Performance evaluation of multi-stratum resources integration based on network function virtualization in software defined elastic data center optical interconnect.

    PubMed

    Yang, Hui; Zhang, Jie; Ji, Yuefeng; Tian, Rui; Han, Jianrui; Lee, Young

    2015-11-30

    Data center interconnect with elastic optical network is a promising scenario to meet the high burstiness and high-bandwidth requirements of data center services. In our previous work, we implemented multi-stratum resilience between IP and elastic optical networks that allows to accommodate data center services. In view of this, this study extends to consider the resource integration by breaking the limit of network device, which can enhance the resource utilization. We propose a novel multi-stratum resources integration (MSRI) architecture based on network function virtualization in software defined elastic data center optical interconnect. A resource integrated mapping (RIM) scheme for MSRI is introduced in the proposed architecture. The MSRI can accommodate the data center services with resources integration when the single function or resource is relatively scarce to provision the services, and enhance globally integrated optimization of optical network and application resources. The overall feasibility and efficiency of the proposed architecture are experimentally verified on the control plane of OpenFlow-based enhanced software defined networking (eSDN) testbed. The performance of RIM scheme under heavy traffic load scenario is also quantitatively evaluated based on MSRI architecture in terms of path blocking probability, provisioning latency and resource utilization, compared with other provisioning schemes. PMID:26698748

  19. A Conceptual Model of Learning Networks

    NASA Astrophysics Data System (ADS)

    Koper, Rob

    In the TENCompetence project a set of UML models (Booch et al. 1999) have been developed to specify the core concepts for Learning Networks Services that support professional competence development. The three most important, high-level models are (a) the use case model, (b) the conceptual model, and (c) the domain model. The first model identifies the primary use cases we need in order to support professional competence development. The second model describes the concept of competence and competence development from a theoretical point of view. What is a competence? How does it relate to the cognitive system of an actor? How are competences developed? The third model is a UML Domain Model that defines, among other things, the components of a Learning Network, defines the concepts and relationships between the concepts in a Learning Network and provides a starting point for the design of the overall architecture for Learning Network Services, including the data model.

  20. Multiscale Modeling of Cortical Neural Networks

    NASA Astrophysics Data System (ADS)

    Torben-Nielsen, Benjamin; Stiefel, Klaus M.

    2009-09-01

    In this study, we describe efforts at modeling the electrophysiological dynamics of cortical networks in a multi-scale manner. Specifically, we describe the implementation of a network model composed of simple single-compartmental neuron models, in which a single complex multi-compartmental model of a pyramidal neuron is embedded. The network is capable of generating Δ (2 Hz, observed during deep sleep states) and γ (40 Hz, observed during wakefulness) oscillations, which are then imposed onto the multi-compartmental model, thus providing realistic, dynamic boundary conditions. We furthermore discuss the challenges and chances involved in multi-scale modeling of neural function.

  1. Multi phase field model for solid state transformation with elastic strain

    NASA Astrophysics Data System (ADS)

    Steinbach, I.; Apel, M.

    2006-05-01

    A multi phase field model is presented for the investigation of the effect of transformation strain on the transformation kinetics, morphology and thermodynamic stability in multi phase materials. The model conserves homogeneity of stress in the diffuse interface between elastically inhomogeneous phases, in which respect it differs from previous models. The model is formulated consistently with the multi phase field model for diffusional and surface driven phase transitions [I. Steinbach, F. Pezzolla, B. Nestler, M. Seeßelberg, R. Prieler, G.J. Schmitz, J.L.L. Rezende, A phase field concept for multiphase systems, Physica D 94 (1996) 135-147; J. Tiaden, B. Nestler, H.J. Diepers, I. Steinbach, The multiphase-field model with an integrated concept for modeling solute diffusion, Physica D 115 (1998) 73-86; I. Steinbach, F. Pezzolla, A generalized field method for multiphase transformations using interface fields, Physica D 134 (1999) 385] and gives a consistent description of interfacial tension, multi phase thermodynamics and elastic stress balance in multiple junctions between an arbitrary number of grains and phases. Some aspects of the model are demonstrated with respect to numerical accuracy and the relation between transformation strain, external stress and thermodynamic equilibrium.

  2. Models of the elastic x-ray scattering feature for warm dense aluminum

    DOE PAGESBeta

    Starrett, Charles Edward; Saumon, Didier

    2015-09-03

    The elastic feature of x-ray scattering from warm dense aluminum has recently been measured by Fletcher et al. [Nature Photonics 9, 274 (2015)] with much higher accuracy than had hitherto been possible. This measurement is a direct test of the ionic structure predicted by models of warm dense matter. We use the method of pseudoatom molecular dynamics to predict this elastic feature for warm dense aluminum with temperatures of 1–100 eV and densities of 2.7–8.1g/cm3. We compare these predictions to experiments, finding good agreement with Fletcher et al. and corroborating the discrepancy found in analyses of an earlier experiment ofmore » Ma et al. [Phys. Rev. Lett. 110, 065001 (2013)]. Lastly, we also evaluate the validity of the Thomas-Fermi model of the electrons and of the hypernetted chain approximation in computing the elastic feature and find them both wanting in the regime currently probed by experiments.« less

  3. Models of the elastic x-ray scattering feature for warm dense aluminum

    SciTech Connect

    Starrett, Charles Edward; Saumon, Didier

    2015-09-03

    The elastic feature of x-ray scattering from warm dense aluminum has recently been measured by Fletcher et al. [Nature Photonics 9, 274 (2015)] with much higher accuracy than had hitherto been possible. This measurement is a direct test of the ionic structure predicted by models of warm dense matter. We use the method of pseudoatom molecular dynamics to predict this elastic feature for warm dense aluminum with temperatures of 1–100 eV and densities of 2.7–8.1g/cm3. We compare these predictions to experiments, finding good agreement with Fletcher et al. and corroborating the discrepancy found in analyses of an earlier experiment of Ma et al. [Phys. Rev. Lett. 110, 065001 (2013)]. Lastly, we also evaluate the validity of the Thomas-Fermi model of the electrons and of the hypernetted chain approximation in computing the elastic feature and find them both wanting in the regime currently probed by experiments.

  4. Experimentally-based multiscale model of the elastic moduli of bovine trabecular bone and its constituents.

    PubMed

    Hamed, Elham; Novitskaya, Ekaterina; Li, Jun; Jasiuk, Iwona; McKittrick, Joanna

    2015-09-01

    The elastic moduli of trabecular bone were modeled using an analytical multiscale approach. Trabecular bone was represented as a porous nanocomposite material with a hierarchical structure spanning from the collagen-mineral level to the trabecular architecture level. In parallel, compression testing was done on bovine femoral trabecular bone samples in two anatomical directions, parallel to the femoral neck axis and perpendicular to it, and the measured elastic moduli were compared with the corresponding theoretical results. To gain insights on the interaction of collagen and minerals at the nanoscale, bone samples were deproteinized or demineralized. After such processing, the treated samples remained as self-standing structures and were tested in compression. Micro-computed tomography was used to characterize the hierarchical structure of these three bone types and to quantify the amount of bone porosity. The obtained experimental data served as inputs to the multiscale model and guided us to represent bone as an interpenetrating composite material. Good agreement was found between the theory and experiments for the elastic moduli of the untreated, deproteinized, and demineralized trabecular bone. PMID:26046284

  5. Models of the elastic x-ray scattering feature for warm dense aluminum

    NASA Astrophysics Data System (ADS)

    Starrett, C. E.; Saumon, D.

    2015-09-01

    The elastic feature of x-ray scattering from warm dense aluminum has recently been measured by Fletcher et al. [Nature Photonics 9, 274 (2015)], 10.1038/nphoton.2015.41 with much higher accuracy than had hitherto been possible. This measurement is a direct test of the ionic structure predicted by models of warm dense matter. We use the method of pseudoatom molecular dynamics to predict this elastic feature for warm dense aluminum with temperatures of 1-100 eV and densities of 2.7 -8.1 g/cm 3 . We compare these predictions to experiments, finding good agreement with Fletcher et al. and corroborating the discrepancy found in analyses of an earlier experiment of Ma et al. [Phys. Rev. Lett. 110, 065001 (2013)], 10.1103/PhysRevLett.110.065001. We also evaluate the validity of the Thomas-Fermi model of the electrons and of the hypernetted chain approximation in computing the elastic feature and find them both wanting in the regime currently probed by experiments.

  6. A complete solution of cartographic displacement based on elastic beams model and Delaunay triangulation

    NASA Astrophysics Data System (ADS)

    Liu, Y.; Guo, Q.; Sun, Y.

    2014-04-01

    In map production and generalization, it is inevitable to arise some spatial conflicts, but the detection and resolution of these spatial conflicts still requires manual operation. It is become a bottleneck hindering the development of automated cartographic generalization. Displacement is the most useful contextual operator that is often used for resolving the conflicts arising between two or more map objects. Automated generalization researches have reported many approaches of displacement including sequential approaches and optimization approaches. As an excellent optimization approach on the basis of energy minimization principles, elastic beams model has been used in resolving displacement problem of roads and buildings for several times. However, to realize a complete displacement solution, techniques of conflict detection and spatial context analysis should be also take into consideration. So we proposed a complete solution of displacement based on the combined use of elastic beams model and constrained Delaunay triangulation (CDT) in this paper. The solution designed as a cyclic and iterative process containing two phases: detection phase and displacement phase. In detection phase, CDT of map is use to detect proximity conflicts, identify spatial relationships and structures, and construct auxiliary structure, so as to support the displacement phase on the basis of elastic beams. In addition, for the improvements of displacement algorithm, a method for adaptive parameters setting and a new iterative strategy are put forward. Finally, we implemented our solution on a testing map generalization platform, and successfully tested it against 2 hand-generated test datasets of roads and buildings respectively.

  7. Elastic Constants of Superconducting MgB2 from Molecular Dynamics Simulations with Shell Model

    NASA Astrophysics Data System (ADS)

    Guo, Yun-Dong; Chen, Xiang-Rong; Yang, Xiang-Dong; Gou, Qing-Quan

    2005-11-01

    The elastic constants of superconducting MgB2 are calculated using a molecular dynamics method (MD) with shell model. The lattice parameters, five independent elastic constants, equations of state (EOS), Debye temperature, and bulk modulus of MgB2 are obtained. Meanwhile, the dependence of the bulk modulus B, the lattice parameters a and c, and the unit cell volume V on the applied pressure are presented. It is demonstrated that the method introduced here can well reproduce the experimental results with a reasonable accuracy. The project supported by National Natural Science Foundation of China under Grant No. 60436010 and the Scientific Research Foundation for the Returned Overseas Chinese Scholars, the Ministry of Education of China under Grant No. 2004176-6-4

  8. Point defect modeling in materials: Coupling ab initio and elasticity approaches

    NASA Astrophysics Data System (ADS)

    Varvenne, Céline; Bruneval, Fabien; Marinica, Mihai-Cosmin; Clouet, Emmanuel

    2013-10-01

    Modeling point defects at an atomic scale requires careful treatment of the long-range atomic relaxations. This elastic field can strongly affect point defect properties calculated in atomistic simulations because of the finite size of the system under study. This is an important restriction for ab initio methods which are limited to a few hundred atoms. We propose an original approach coupling ab initio calculations and linear elasticity theory to obtain the properties of an isolated point defect for reduced supercell sizes. The reliability and benefit of our approach are demonstrated for three problematic cases: the self-interstitial in zirconium, clusters of self-interstitials in iron, and the neutral vacancy in silicon.

  9. K--Nucleus Elastic Scattering at IntermediateEnergies in the Isobar-Doorway Model

    NASA Astrophysics Data System (ADS)

    Toyama, F. M.

    1983-11-01

    The differential cross sections for the K--nucleus elastic scattering at about PK = 800 MeV/c are calculated in the phenomenological isobar-doorway model. The many-body corrections on Y* resonances in nuclei are represented by the resonance energy shift Δ E and width-modification factor β. The parametrizations given by Gopal et al. are used for the resonance amplitudes. The effects of Δ E and β on the cross sections are investigated in detail. The results are compared with the available experimental data for the K- elastic scattering on 12C and 40Ca at PK = 800 MeV/c. The calculated cross sections are in good agreement with the data. However, the cross sections are not very sensitive to Δ E and β.

  10. Elastic wave velocities of peridotite KLB-1 at mantle pressures and implications for mantle velocity modeling

    NASA Astrophysics Data System (ADS)

    Wang, Xuebing; Chen, Ting; Zou, Yongtao; Liebermann, Robert C.; Li, Baosheng

    2015-05-01

    Compressional (VP) and shear (VS) wave velocities of a synthetic KLB-1 peridotite were measured for the first time up to 10 GPa using ultrasonic interferometry. Analysis of the P and S wave velocities yielded K0 = 123(1) GPa, K0' = 5.1(2), G0 = 75(1) GPa, and G0'= 1.3(1) for the bulk and shear moduli and their pressure derivatives. Comparison with Voigt-Reuss-Hill (VRH) calculations based on literature elasticity data for its constituent minerals indicates that the experimentally measured P and S wave velocities, densities, bulk sound velocities, and VP/VS ratios fall close to the lower limit of VRH averages associated with the uncertainties of the mineral elasticity data. A comparison with previous modeling of mantle compositions implies that the velocities for an aggregate with the pyrolitic composition of KLB-1 are in close agreement with seismic data at the depths of the Earth's upper mantle.

  11. Neural network modeling of distillation columns

    SciTech Connect

    Baratti, R.; Vacca, G.; Servida, A.

    1995-06-01

    Neural network modeling (NNM) was implemented for monitoring and control applications on two actual distillation columns: the butane splitter tower and the gasoline stabilizer. The two distillation columns are in operation at the SARAS refinery. Results show that with proper implementation techniques NNM can significantly improve column operation. The common belief that neural networks can be used as black-box process models is not completely true. Effective implementation always requires a minimum degree of process knowledge to identify the relevant inputs to the net. After background and generalities on neural network modeling, the paper describes efforts on the development of neural networks for the two distillation units.

  12. Measurement of the nonlinear elasticity of red blood cell membranes

    NASA Astrophysics Data System (ADS)

    Park, Yongkeun; Best, Catherine A.; Kuriabova, Tatiana; Henle, Mark L.; Feld, Michael S.; Levine, Alex J.; Popescu, Gabriel

    2011-05-01

    The membranes of human red blood cells (RBCs) are a composite of a fluid lipid bilayer and a triangular network of semiflexible filaments (spectrin). We perform cellular microrheology using the dynamic membrane fluctuations of the RBCs to extract the elastic moduli of this composite membrane. By applying known osmotic stresses, we measure the changes in the elastic constants under imposed strain and thereby determine the nonlinear elastic properties of the membrane. We find that the elastic nonlinearities of the shear modulus in tensed RBC membranes can be well understood in terms of a simple wormlike chain model. Our results show that the elasticity of the spectrin network can mostly account for the area compression modulus at physiological osmolality, suggesting that the lipid bilayer has significant excess area. As the cell swells, the elastic contribution from the now tensed lipid membrane becomes dominant.

  13. Numerical aspects in modeling high Deborah number flow and elastic instability

    NASA Astrophysics Data System (ADS)

    Kwon, Youngdon

    2014-05-01

    Investigating highly nonlinear viscoelastic flow in 2D domain, we explore problem as well as property possibly inherent in the streamline upwinding technique (SUPG) and then present various results of elastic instability. The mathematically stable Leonov model written in tensor-logarithmic formulation is employed in the framework of finite element method for spatial discretization of several representative problem domains. For enhancement of computation speed, decoupled integration scheme is applied for shear thinning and Boger-type fluids. From the analysis of 4:1 contraction flow at low and moderate values of the Deborah number (De) the solution with SUPG method does not show noticeable difference from the one by the computation without upwinding. On the other hand, in the flow regime of high De, especially in the state of elastic instability the SUPG significantly distorts the flow field and the result differs considerably from the solution acquired straightforwardly. When the strength of elastic flow and thus the nonlinearity further increase, the computational scheme with upwinding fails to converge and evolutionary solution does not become available any more. All this result suggests that extreme care has to be taken on occasions where upwinding is applied, and one has to first of all prove validity of this algorithm in the case of high nonlinearity. On the contrary, the straightforward computation with no upwinding can efficiently model representative phenomena of elastic instability in such benchmark problems as 4:1 contraction flow, flow over a circular cylinder and flow over asymmetric array of cylinders. Asymmetry of the flow field occurring in the symmetric domain, enhanced spatial and temporal fluctuation of dynamic variables and flow effects caused by extension hardening are properly described in this study.

  14. Combined thermal and elastic modeling of the normal and tumorous breast

    NASA Astrophysics Data System (ADS)

    Jiang, Li; Zhan, Wang; Loew, Murray

    2008-03-01

    The abnormal thermogram has been shown to be a reliable indicator of a high risk of breast cancer, but an open question is how to quantify the complex relationships between the breast thermal behaviors and the underlying physiological/pathological conditions. Previous thermal modeling techniques generally did not utilize the breast geometry determined by the gravity-induced elastic deformations arising from various body postures. In this paper, a 3-D finite-element method is developed for combined modeling of the thermal and elastic properties of the breast, including the mechanical nonlinearity associated with large deformations. The effects of the thermal and elastic properties of the breast tissues are investigated quantitatively. For the normal breast in a standing/sitting up posture, the gravity-induced deformation alone is found to be able to cause an asymmetric temperature distribution even though all the thermal/elastic properties are symmetrical, and this temperature asymmetry increases for softer and more compressible breast tissues. For a tumorous breast, we found that the surface-temperature alterations generally can be recognizable for superficial tumors at depths less than 20 mm. Tumor size plays a less important role than the tumor depth in determining the tumor-induced temperature difference. This result may imply that a higher thermal sensitivity is critical for a breast thermogram system when deeper tumors are present, even if the tumor is relatively large. We expect this new method to provide a stronger foundation for, and greater specificity and precision in, thermographic diagnosis and treatment of breast tumors.

  15. Creating, documenting and sharing network models.

    PubMed

    Crook, Sharon M; Bednar, James A; Berger, Sandra; Cannon, Robert; Davison, Andrew P; Djurfeldt, Mikael; Eppler, Jochen; Kriener, Birgit; Furber, Steve; Graham, Bruce; Plesser, Hans E; Schwabe, Lars; Smith, Leslie; Steuber, Volker; van Albada, Sacha

    2012-01-01

    As computational neuroscience matures, many simulation environments are available that are useful for neuronal network modeling. However, methods for successfully documenting models for publication and for exchanging models and model components among these projects are still under development. Here we briefly review existing software and applications for network model creation, documentation and exchange. Then we discuss a few of the larger issues facing the field of computational neuroscience regarding network modeling and suggest solutions to some of these problems, concentrating in particular on standardized network model terminology, notation, and descriptions and explicit documentation of model scaling. We hope this will enable and encourage computational neuroscientists to share their models more systematically in the future. PMID:22994683

  16. Prediction of elasticity constants in small biomaterial samples such as bone. A comparison between classical optimization techniques and identification with artificial neural networks.

    PubMed

    Lucchinetti, E; Stüssi, E

    2004-01-01

    Measuring the elasticity constants of biological materials often sets important constraints, such as the limited size or the irregular geometry of the samples. In this paper, the identification approach as applied to the specific problem of accurately retrieving the material properties of small bone samples from a measured displacement field is discussed. The identification procedure can be formulated as an optimization problem with the goal of minimizing the difference between computed and measured displacements by searching for an appropriate set of material parameters using dedicated algorithms. Alternatively, the backcalculation of the material properties from displacement maps can be implemented using artificial neural networks. In a practical situation, however, measurement errors strongly affect the identification results, calling for robust optimization approaches in order accurately to retrieve the material properties from error-polluted sample deformation maps. Using a simple model problem, the performances of both classical and neural network driven optimization are compared. When performed before the collection of experimental data, this evaluation can be very helpful in pinpointing potential problems with the envisaged experiments such as the need for a sufficient signal-to-noise ratio, particularly important when working with small tissue samples such as specimens cut from rodent bones or single bone trabeculae. PMID:15648663

  17. Modeling of hysteresis in gene regulatory networks.

    PubMed

    Hu, J; Qin, K R; Xiang, C; Lee, T H

    2012-08-01

    Hysteresis, observed in many gene regulatory networks, has a pivotal impact on biological systems, which enhances the robustness of cell functions. In this paper, a general model is proposed to describe the hysteretic gene regulatory network by combining the hysteresis component and the transient dynamics. The Bouc-Wen hysteresis model is modified to describe the hysteresis component in the mammalian gene regulatory networks. Rigorous mathematical analysis on the dynamical properties of the model is presented to ensure the bounded-input-bounded-output (BIBO) stability and demonstrates that the original Bouc-Wen model can only generate a clockwise hysteresis loop while the modified model can describe both clockwise and counter clockwise hysteresis loops. Simulation studies have shown that the hysteresis loops from our model are consistent with the experimental observations in three mammalian gene regulatory networks and two E.coli gene regulatory networks, which demonstrate the ability and accuracy of the mathematical model to emulate natural gene expression behavior with hysteresis. A comparison study has also been conducted to show that this model fits the experiment data significantly better than previous ones in the literature. The successful modeling of the hysteresis in all the five hysteretic gene regulatory networks suggests that the new model has the potential to be a unified framework for modeling hysteresis in gene regulatory networks and provide better understanding of the general mechanism that drives the hysteretic function. PMID:22588784

  18. A minimal model for flow control on an aerofoil using a poro-elastic coating

    NASA Astrophysics Data System (ADS)

    Venkataraman, Divya; Bottaro, Alessandro; Govindarajan, Rama

    2014-05-01

    A minimal model is obtained for vortex-shedding from an aerofoil with a porous coating of flow-compliant feather-like actuators, in order to better understand this passive way to achieve flow control. This model is realized by linearly coupling a minimal-order model for vortex-shedding from the same aerofoil without any such coating with an equation for the poro-elastic coating, here modelled as a linear damped oscillator. The various coefficients in this model, derived using perturbation techniques, aid in our understanding of the physics of this fluid-structure interaction problem. The minimal model for a coated aerofoil indicates the presence of distinct regimes that are dependent on the flow and coating characteristics. The models and the parametric studies performed provide insight into the selection of optimal coating parameters, to enable flow control at low Reynolds numbers.

  19. Modelling dendritic ecological networks in space: anintegrated network perspective

    USGS Publications Warehouse

    Peterson, Erin E.; Ver Hoef, Jay M.; Isaak, Dan J.; Falke, Jeffrey A.; Fortin, Marie-Josée; Jordon, Chris E.; McNyset, Kristina; Monestiez, Pascal; Ruesch, Aaron S.; Sengupta, Aritra; Som, Nicholas; Steel, E. Ashley; Theobald, David M.; Torgersen, Christian E.; Wenger, Seth J.

    2013-01-01

    the context of stream ecology. Within this context, we summarise the key innovations of a new family of spatial statistical models that describe spatial relationships in DENs. Finally, we discuss how different network analyses may be combined to address more complex and novel research questions. While our main focus is streams, the taxonomy of network analyses is also relevant anywhere spatial patterns in both network and 2-D space can be used to explore the influence of multi-scale processes on biota and their habitat (e.g. plant morphology and pest infestation, or preferential migration along stream or road corridors).

  20. Modeling information flow in biological networks

    NASA Astrophysics Data System (ADS)

    Kim, Yoo-Ah; Przytycki, Jozef H.; Wuchty, Stefan; Przytycka, Teresa M.

    2011-06-01

    Large-scale molecular interaction networks are being increasingly used to provide a system level view of cellular processes. Modeling communications between nodes in such huge networks as information flows is useful for dissecting dynamical dependences between individual network components. In the information flow model, individual nodes are assumed to communicate with each other by propagating the signals through intermediate nodes in the network. In this paper, we first provide an overview of the state of the art of research in the network analysis based on information flow models. In the second part, we describe our computational method underlying our recent work on discovering dysregulated pathways in glioma. Motivated by applications to inferring information flow from genotype to phenotype in a very large human interaction network, we generalized previous approaches to compute information flows for a large number of instances and also provided a formal proof for the method.

  1. Autonomous Boolean modeling of gene regulatory networks

    NASA Astrophysics Data System (ADS)

    Socolar, Joshua; Sun, Mengyang; Cheng, Xianrui

    2014-03-01

    In cases where the dynamical properties of gene regulatory networks are important, a faithful model must include three key features: a network topology; a functional response of each element to its inputs; and timing information about the transmission of signals across network links. Autonomous Boolean network (ABN) models are efficient representations of these elements and are amenable to analysis. We present an ABN model of the gene regulatory network governing cell fate specification in the early sea urchin embryo, which must generate three bands of distinct tissue types after several cell divisions, beginning from an initial condition with only two distinct cell types. Analysis of the spatial patterning problem and the dynamics of a network constructed from available experimental results reveals that a simple mechanism is at work in this case. Supported by NSF Grant DMS-10-68602

  2. Characterization and modeling of weighted networks

    NASA Astrophysics Data System (ADS)

    Barthélemy, Marc; Barrat, Alain; Pastor-Satorras, Romualdo; Vespignani, Alessandro

    2005-02-01

    We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network which are representatives of critical infrastructure and social system, respectively. The main empirical results are (i) the broad distributions of various quantities and (ii) the existence of weight-topology correlations. These measurements show that weights are relevant and that in general the modeling of complex networks must go beyond topology. We review a model which provides an explanation for the features observed in several real-world networks. This model of weighted network formation relies on the dynamical coupling between topology and weights, considering the rearrangement of new links are introduced in the system.

  3. Elastic energy in locomotion: Spring-mass vs. poly-articulated models.

    PubMed

    Moretto, Pierre; Villeger, David; Costes, Antony; Watier, Bruno

    2016-07-01

    The human is often modeled as a Poly-Articulated Model (PAM) with rigid segments while some authors use a Spring Mass Model (SMM) for modeling locomotion. These two models are considered independent, and the objective of this study was to link them in order to enlighten the origin of the elasticity in locomotion. Using the characteristics of the two models, a theoretical relationship demonstrates that the variation of elastic energy of the SMM equals the variation of the internal kinetic energy minus internal forces work of the PAM. This theoretical relationship was experimentally investigated among 19 healthy participants walking and running on a treadmill. The results showed that the equality is verified except during the double support phase at 0.56ms(-1), at high walking speeds (1.67 and 2.22ms(-1)) or during the aerial phase of running. The formal relationship showed that the global stiffness of the SMM is directly related to the work of the internal forces of the PAM, and thus, to the characteristics of the musculoskeletal system. It also showed the relevance of taking into account the participation of each joint in the global stiffness. Finally, the coordination of internal forces work to produce a global stiffness may be considered as a new criterion of movement optimization for clinical purposes or motion planning for humanoid robots. PMID:27285478

  4. Radius exponent in elastic and rigid arterial models optimized by the least energy principle

    PubMed Central

    Nakamura, Yoshihiro; Awa, Shoichi

    2014-01-01

    Abstract It was analyzed in normal physiological arteries whether the least energy principle would suffice to account for the radius exponent x. The mammalian arterial system was modeled as two types, the elastic or the rigid, to which Bernoulli's and Hagen‐Poiseuille's equations were applied, respectively. We minimized the total energy function E, which was defined as the sum of kinetic, pressure, metabolic and thermal energies, and loss of each per unit time in a single artery transporting viscous incompressible blood. Assuming a scaling exponent α between the vessel radius (r) and length (l) to be 1.0, x resulted in 2.33 in the elastic model. The rigid model provided a continuously changing x from 2.33 to 3.0, which corresponded to Uylings’ and Murray's theories, respectively, through a function combining Reynolds number with a proportional coefficient of the l − r relationship. These results were expanded to an asymmetric arterial fractal tree with the blood flow preservation rule. While x in the optimal elastic model accounted for around 2.3 in proximal systemic (r >1 mm) and whole pulmonary arteries (r ≥0.004 mm), optimal x in the rigid model explained 2.7 in elastic‐muscular (0.1 < r ≤1 mm) and 3.0 in peripheral resistive systemic arteries (0.004 ≤ r ≤0.1 mm), in agreement with data obtained from angiographic, cast‐morphometric, and in vivo experimental studies in the literature. The least energy principle on the total energy basis provides an alternate concept of optimality relating to mammalian arterial fractal dimensions under α = 1.0. PMID:24744905

  5. Optimized Null Model for Protein Structure Networks

    PubMed Central

    Lappe, Michael; Pržulj, Nataša

    2009-01-01

    Much attention has recently been given to the statistical significance of topological features observed in biological networks. Here, we consider residue interaction graphs (RIGs) as network representations of protein structures with residues as nodes and inter-residue interactions as edges. Degree-preserving randomized models have been widely used for this purpose in biomolecular networks. However, such a single summary statistic of a network may not be detailed enough to capture the complex topological characteristics of protein structures and their network counterparts. Here, we investigate a variety of topological properties of RIGs to find a well fitting network null model for them. The RIGs are derived from a structurally diverse protein data set at various distance cut-offs and for different groups of interacting atoms. We compare the network structure of RIGs to several random graph models. We show that 3-dimensional geometric random graphs, that model spatial relationships between objects, provide the best fit to RIGs. We investigate the relationship between the strength of the fit and various protein structural features. We show that the fit depends on protein size, structural class, and thermostability, but not on quaternary structure. We apply our model to the identification of significantly over-represented structural building blocks, i.e., network motifs, in protein structure networks. As expected, choosing geometric graphs as a null model results in the most specific identification of motifs. Our geometric random graph model may facilitate further graph-based studies of protein conformation space and have important implications for protein structure comparison and prediction. The choice of a well-fitting null model is crucial for finding structural motifs that play an important role in protein folding, stability and function. To our knowledge, this is the first study that addresses the challenge of finding an optimized null model for RIGs, by

  6. [Modern poro-elastic biomechanical model of bone tissue. I. Biomechanical function of fluids in bone].

    PubMed

    Rogala, Piotr; Uklejewski, Ryszard; Stryła, Wanda

    2002-01-01

    The modern biomechanical two-phase poroelastic model of bone tissue is presented. Bone tissue is treated in this model as a porous elastically deformed solid filled with a viscous newtonian fluid. Traditional one-phase biomechanical model of bone tissue, which is characterized by the Young modulus and the Poisson's coefficient, is still valid and it can be treated as an approximate model in comparison with the more realistic two-phase model of bone tissue. The biomechanical function of fluids in bone is considered. Bone biodynamics is presented in form of the scheme which illustrates the mechano-adaptive, the mechano-electric and the electrophysiologic properties of bone tissue. Essentials of the poroelastic model of bone tissue is the mechanical load induced flow of intraosseous fluid and the associated strain generated electric potentials SGPs. PMID:12238403

  7. Price and income elasticities of energy demand: Some estimates for Kuwait using two econometric models

    SciTech Connect

    Al-Mutairi, N.H.; Eltony, M.N.

    1995-12-31

    This paper estimates the demand for energy in Kuwait for the period 1965-1989 using two econometric models: a cointegration and error correction model (ECM) and a simultaneous-equation model (SEM). The results obtained from both models are similar. It is found that the energy demand is inelastic with respect to price in the short and long run, and while it is elastic in the long run, the energy demand is inelastic with respect to income in the short run. Both models` validation shows that the ECM performed better in replicating the past than the simultaneous model, suggesting the need to use the ECM to identify future prospects for energy demand in Kuwait.

  8. Network congestion analysis of gravity generated models

    NASA Astrophysics Data System (ADS)

    Maniadakis, Dimitris; Varoutas, Dimitris

    2014-07-01

    The network topology has lately proved to be critical to the appearance of traffic congestion, with scale-free networks being the less affected at high volumes of traffic. Here, the congestion dynamics are investigated for a class of networks that has experienced a resurgence of interest, the networks based on the gravity model. In addition, supplementary to the standard paradigm of uniform traffic volumes between randomly interacting node pairs, more realistic gravity traffic patterns are used to simulate the flows in the network. Results indicate that depending on the traffic pattern, the networks have different tolerance to congestion. Experiment simulation shows that the topologies created on the basis of the gravity model suffer less from congestion than the random, the scale-free or the Jackson-Rogers ones under both random and gravity traffic patterns. The congestion level is found to be approximately correlated with the network clustering coefficient in the case of random traffic, whereas in the case of gravity traffic such a correlation is not a trivial one. Other basic network properties such as the average shortest path and the diameter are seen to correlate fairly well with the congestion level. Further investigation on the adjustment of the gravity model parameters indicates particular sensitivity to network congestion. This work may have practical implications for designing traffic networks with both reasonable budget and good performance.

  9. Towards Reproducible Descriptions of Neuronal Network Models

    PubMed Central

    Nordlie, Eilen; Gewaltig, Marc-Oliver; Plesser, Hans Ekkehard

    2009-01-01

    Progress in science depends on the effective exchange of ideas among scientists. New ideas can be assessed and criticized in a meaningful manner only if they are formulated precisely. This applies to simulation studies as well as to experiments and theories. But after more than 50 years of neuronal network simulations, we still lack a clear and common understanding of the role of computational models in neuroscience as well as established practices for describing network models in publications. This hinders the critical evaluation of network models as well as their re-use. We analyze here 14 research papers proposing neuronal network models of different complexity and find widely varying approaches to model descriptions, with regard to both the means of description and the ordering and placement of material. We further observe great variation in the graphical representation of networks and the notation used in equations. Based on our observations, we propose a good model description practice, composed of guidelines for the organization of publications, a checklist for model descriptions, templates for tables presenting model structure, and guidelines for diagrams of networks. The main purpose of this good practice is to trigger a debate about the communication of neuronal network models in a manner comprehensible to humans, as opposed to machine-readable model description languages. We believe that the good model description practice proposed here, together with a number of other recent initiatives on data-, model-, and software-sharing, may lead to a deeper and more fruitful exchange of ideas among computational neuroscientists in years to come. We further hope that work on standardized ways of describing—and thinking about—complex neuronal networks will lead the scientific community to a clearer understanding of high-level concepts in network dynamics, and will thus lead to deeper insights into the function of the brain. PMID:19662159

  10. A Simple ``Sticky Disc'' Model for Crystalline and Amorphous Networks

    NASA Astrophysics Data System (ADS)

    Huerta, Adrian; Chubynsky, Nikita; Naumis, Gerardo; Thorpe, Michael

    2005-03-01

    Using Monte Carlo simulations, we study the structural and thermodynamic behavior of a simple one component network forming model made up of ``sticky discs.'' Central and bond bending forces was included, modeling such interactions as a simple square well radial and angular three body term in the potential respectively. The main feature of this model is the ability to form crystalline and amorphous networks upon cooling, similar to that obtained using the so called WWW methodology to describe the network of some vitreous structures [1]. With the ``pebble game'' algorithm [2], we evaluate the number of degrees of freedom and the amount of stress in both the amorphous and crystalline structures. We discuss the connection between the configurational entropy (associated with the topology) and the degrees of freedom. Other effects such as elasticity of these structures are also discussed. 1. Wooten, F., Winer, K. and Weaire, D., Phys. Rev. Lett., 54 1392- 1395 (1985). 2. Jacobs, D.J. and Thorpe, M.F., Phys. Rev. Lett., 75 4051- 4054 (1995).

  11. Modeling tether-ballast asteroid diversion systems, including tether mass and elasticity

    NASA Astrophysics Data System (ADS)

    French, David B.; Mazzoleni, Andre P.

    2014-10-01

    The risk of an impact between a large asteroid and the Earth has been significant enough to attract the attention of many researchers. This paper focuses on a mitigation technique that involves the use of a long tether and ballast mass to divert an asteroid. When such a tether is modeled as massless and inelastic, results show that the method may be viable for diverting asteroids away from a collision with the Earth; the next step towards demonstrating the viability of the approach is to conduct a study which uses a more realistic tether model. This paper presents such a study, in which the tether models include tether mass and elasticity. These models verify that a tether-ballast system is capable of diverting Earth-threatening asteroids. Detailed parametric studies are presented which illustrate how system performance depends on tether mass and elasticity. Also, case studies are presented which show how more realistic models can aid in the design of tether-ballast asteroid mitigation systems. Key findings include the dangers imposed by periods during which the tether goes slack and ways to preclude this.

  12. Elasticity and geometry: a computational model of the Heineke-Mikulicz strictureplasty.

    PubMed

    Tsamis, Alkiviadis; Pocivavsek, Luka; Vorp, David A

    2014-11-01

    Crohn's disease is a challenging inflammatory process with a propensity for focal gastro-intestinal tract inflammation and stricture. Surgically, Crohn's is often treated with resection. However, a subtype of diffuse disease with multiple strictures is treated by strictureplasty procedures in hope of avoiding short-gut syndrome. Prior work by Pocivavsek et al. defined the geometry of a Heineke-Mikulicz strictureplasty. Here, we bring this analysis one step closer to clinical and biological relevance by calculating the mechanical stresses and strains that the strictureplasty deformation generates on a model intestinal wall. The small bowel is simulated as a linearly elastic isotropic deformable cylindrical shell using finite element modeling. Data show a divergence in elastic response between the anti-mesenteric and mesenteric halves. The anti-mesenteric surface shows a bending dominated elastic response that correlates with the prior purely geometric analysis. However, the mesenteric half is not a neutral bystander during strictureplasty formation, as geometric arguments predict. Strong in-plane stretching strains develop in a rim around the image of the transverse closure, which may impact local perfusion and serve as sites of disease recurrence. Lastly, nearly all the deformation energy is stored in the central vertex stitch, placing this part at highest risk of dehiscence. This study enhances our understanding of mechanical response in complex nonlinear cylindrical geometries like the surgically manipulated intestinal tract. The developed framework serves as a platform for future addition of more complex clinically relevant parameters to our model, including real tissue properties, anisotropy, blood supply modeling, and patient deriver anatomic factors. PMID:24671519

  13. Modeling the Elastic Modulus of 2D Woven CVI SiC Composites

    NASA Technical Reports Server (NTRS)

    Morscher, Gregory N.

    2006-01-01

    The use of fiber, interphase, CVI SiC minicomposites as structural elements for 2D-woven SiC fiber reinforced chemically vapor infiltrated (CVI) SiC matrix composites is demonstrated to be a viable approach to model the elastic modulus of these composite systems when tensile loaded in an orthogonal direction. The 0deg (loading direction) and 90deg (perpendicular to loading direction) oriented minicomposites as well as the open porosity and excess SiC associated with CVI SiC composites were all modeled as parallel elements using simple Rule of Mixtures techniques. Excellent agreement for a variety of 2D woven Hi-Nicalon(TradeMark) fiber-reinforced and Sylramic-iBN reinforced CVI SiC matrix composites that differed in numbers of plies, constituent content, thickness, density, and number of woven tows in either direction (i.e, balanced weaves versus unbalanced weaves) was achieved. It was found that elastic modulus was not only dependent on constituent content, but also the degree to which 90deg minicomposites carried load. This depended on the degree of interaction between 90deg and 0deg minicomposites which was quantified to some extent by composite density. The relationships developed here for elastic modulus only necessitated the knowledge of the fractional contents of fiber, interphase and CVI SiC as well as the tow size and shape. It was concluded that such relationships are fairly robust for orthogonally loaded 2D woven CVI SiC composite system and can be implemented by ceramic matrix composite component modelers and designers for modeling the local stiffness in simple or complex parts fabricated with variable constituent contents.

  14. REVIEW ARTICLE: Network models of fluid, hexatic and polymerized membranes

    NASA Astrophysics Data System (ADS)

    Gompper, G.; Kroll, D. M.

    1997-10-01

    The thermal behaviour of membranes - surfaces of nearly vanishing tension - depends strongly on their internal state, which can be either fluid, crystalline (or polymerized), or hexatic. Thermal fluctuations have a dramatic effect on the conformation and elastic properties of membranes. We describe in this review both the continuum models of membranes which are used for theoretical analyses as well as the network models employed in simulations. The fruitful interaction between these two approaches, which has lead to recent progress in this field, is emphasized. We summarize the essential results of recent research on fluctuating membranes; in particular, the effects of bending rigidity, self-avoidance, attractive interactions, disorder, topological defects and external compression forces are discussed in detail.

  15. Computational Statistical Methods for Social Network Models

    PubMed Central

    Hunter, David R.; Krivitsky, Pavel N.; Schweinberger, Michael

    2013-01-01

    We review the broad range of recent statistical work in social network models, with emphasis on computational aspects of these methods. Particular focus is applied to exponential-family random graph models (ERGM) and latent variable models for data on complete networks observed at a single time point, though we also briefly review many methods for incompletely observed networks and networks observed at multiple time points. Although we mention far more modeling techniques than we can possibly cover in depth, we provide numerous citations to current literature. We illustrate several of the methods on a small, well-known network dataset, Sampson’s monks, providing code where possible so that these analyses may be duplicated. PMID:23828720

  16. A Multi-Backup Path Protection scheme for survivability in Elastic Optical Networks

    NASA Astrophysics Data System (ADS)

    Yadav, Dharmendra Singh; Chakraborty, Abhishek; Manoj, B. S.

    2016-07-01

    Two important challenges in designing a survivable optical network are minimizing backup spectrum allocation and ensuring spectrum assignment constraints. Allocating backup spectrum is one important approach for survivable optical network design. Connection requests which are rejected due to the unavailability of a single backup path can be survived using multiple backup routes. Multiple backup routes not only increase connection acceptance rate, but also improve backup resource sharing. In this paper, we present a strategy for survivability which optimizes primary and backup spectrum allocations and multiple backup route assignments for surviving a connection request. In our strategy, named as Backup Spectrum Reservation with MultiPath Protection (BSR-MPP), multiple backup routes are searched over advance reserved backup resources when an optical connection is concerned. Simulation results show that confinement of backup resources result in higher resource sharing and assignment of multiple backup lightpaths. It can also be observed that BSR-MPP has lower Bandwidth Blocking Probability and higher spectrum efficiency as compared to conventional Shared Path Protection (SPP) and MultiPath Protection (MPP) strategies.

  17. Modeling deformation induced by seasonal variations of continental water in the Himalaya region: Sensitivity to Earth elastic structure

    NASA Astrophysics Data System (ADS)

    Chanard, K.; Avouac, J. P.; Ramillien, G.; Genrich, J.

    2014-06-01

    Strong seasonal variations of horizontal and vertical positions are observed on GPS time series from stations located in Nepal, India, and Tibet (China). We show that this geodetic deformation can be explained by seasonal variations of continental water storage driven by the monsoon. For this purpose, we use satellite data from the Gravity Recovery and Climate Experiment to determine the time evolution of surface loading. We compute the expected geodetic deformation assuming a perfectly elastic Earth model. We consider Green's functions, describing the surface deformation response to a point load, for an elastic homogeneous half-space model and for a layered nonrotating spherical Earth model based on the Preliminary Reference Earth Model and a local seismic velocity model. The amplitude and phase of the seasonal variation of the vertical and horizontal geodetic positions can be jointly adjusted only with the layered Earth model, while an elastic half-space model fails, emphasizing the importance of using a realistic Earth elastic structure to model surface displacements induced by surface loading. We demonstrate, based on a formal inversion, that the fit to the geodetic data can be improved by adjusting the layered Earth model. Therefore, the study also shows that the modeling of geodetic seasonal variations provides a way to probe the elastic structure of the Earth, even in the absence of direct measurements of surface load variations.

  18. A Modeling Approach for Burn Scar Assessment Using Natural Features and Elastic Property

    SciTech Connect

    Tsap, L V; Zhang, Y; Goldgof, D B; Sarkar, S

    2004-04-02

    A modeling approach is presented for quantitative burn scar assessment. Emphases are given to: (1) constructing a finite element model from natural image features with an adaptive mesh, and (2) quantifying the Young's modulus of scars using the finite element model and the regularization method. A set of natural point features is extracted from the images of burn patients. A Delaunay triangle mesh is then generated that adapts to the point features. A 3D finite element model is built on top of the mesh with the aid of range images providing the depth information. The Young's modulus of scars is quantified with a simplified regularization functional, assuming that the knowledge of scar's geometry is available. The consistency between the Relative Elasticity Index and the physician's rating based on the Vancouver Scale (a relative scale used to rate burn scars) indicates that the proposed modeling approach has high potentials for image-based quantitative burn scar assessment.

  19. Statistical model for the prediction of elastic wave scattering from finite complicated shells

    NASA Astrophysics Data System (ADS)

    He, Hua

    This thesis develops a simple statistical model to estimate bistatic elastic scattering from finite complicated shells in the mid-frequency range, 3 < ka/ < 10. The model has three parts: (1) sound power injection into the shell; (2) coupling among the elastic waves in the shell and wave power equipartition (3) sound radiation from the shell. Within 30o of beam aspect, sound power injection into the shell is mainly caused by acoustic trace matching, and is estimated by using an infinitely long shell model. Once trace matched, the compressional and shear waves can couple to each other and to the subsonic flexural waves at shell discontinuities such as bulkheads and endcaps. Under extensive wave conversion, wave power, defined as energy density multiplied by axial group speed, is hypothesized to be equipartitioned among the elastic wave types. Numerical calculations are conducted and the results show that the wave power equipartition hypothesis is plausible for a finite endcapped shell with four heavy deep rings. Using the wave power equipartition hypothesis, the shell motion is then converted to sound pressure in the surrounding fluid using Green's theorem. The sound radiation is further extended to the time domain, using random phase realizations and a decay rate model, which considers various dissipation mechanisms in the shells. The predicted target strength is compared with measured data for the ringed shell and the internalled shell, with the internal structures resiliently mounted to the rings. In terms of the mean target strength over the frequency region 3 < ka/ < 10 and the observation region within 30o of beam aspect, the prediction differs from the measured data by less than 2.5 dB for the second and third roundtrip of the trace matched wave in the shells, as well as for a time integrated case. The ring influence on elastic wave speeds is also studied. Inclusion of the influence in the model does not generally yield a better agreement with the

  20. On the Opening of Thick Walled Elastic Tubes: A Fluid-Structure Model for Acid Reflux

    NASA Astrophysics Data System (ADS)

    Ghosh, Sudip; Kahrilas, Peter

    2005-11-01

    A coupled fluid-structure mathematical model was developed to quantify rapid opening of thick-walled elastic tubes, a phenomenon underlying biological flows such as gastroesophageal reflux disease (GERD). The wall was modeled using non-linear finite deformation theory to predict space-time radial distention of an axisymmetric tube with luminal fluid flow. Anisotropic azimuthal and longitudinal muscle-induced stresses were incorporated, and interstitial material properties were assumed isotropic and linearly elastic. Fluid flow was modeled using lubrication theory with inertial correction. Opening and flow were driven by a specified inflow pressure and zero pressure gradient was specified at outflow. No-slip and surface force balance were applied at the fluid-wall interface. Viscoelasticity was modeled with ad hoc damping and the evolution of the tube geometry was predicted at mid-layer. A potentially important discovery was made when applied to studies of initiation of opening with GERD: while material stiffness is of minor consequence, small changes in resting lumen distension (˜2 mm diameter) may be a sensitive distinguishing feature of the disease.

  1. Elastic instabilities in a layered cerebral cortex: A revised axonal tension model for cortex folding

    NASA Astrophysics Data System (ADS)

    Schwarz, J. M.

    Despite decades of research, there is still no consensus regarding the mechanism(s) driving cerebral cortex folding. Two different mechanisms--axonal tension based on efficient wiring of the neurons and differential growth-induced buckling--are the prevailing hypotheses, though quantitative comparison with data raises issues with both of them. I will present a model for the elasticity of the cerebral cortex as a layered material with bending energy along the layers and elastic energy between them. The cortex is also subjected to axons pulling from the underlying white matter. Above a critical threshold force, a 'flat' cortex configuration becomes unstable and periodic undulations emerge, i.e. a buckling instability occurs, to presumably initiate folds in the cortex. This model builds on the original axonal tension model for cortex folding based on the efficient wiring of neurons but with no buckling mechanism and allows one to understand why small mice brains exhibit no folds, while larger human brains do. Finally, an estimate of the bending rigidity constant for the cortex can be made based on the critical wavelength to quantitatively test this revised axonal tensional model. This work was done in collaboration with Oksana Manyuhina and David Mayett.

  2. Modeling of the interaction between bone tissue and resorbable biomaterial as linear elastic materials with voids

    NASA Astrophysics Data System (ADS)

    Andreaus, Ugo; Giorgio, Ivan; Madeo, Angela

    2015-02-01

    In this paper, a continuum mixture model with evolving mass densities and porosity is proposed to describe the process of bone remodeling in the presence of bio-resorbable materials as driven by externally applied loads. From a mechanical point of view, both bone tissue and biomaterial are modeled as linear elastic media with voids in the sense of Cowin and Nunziato (J Elast 13:125-147, 1983). In the proposed continuum model, the change of volume fraction related to the void volume is directly accounted for by considering porosity as an independent kinematical field. The bio-mechanical coupling is ensured by the introduction of a suitable stimulus which allows for discriminating between resorption (of both bone and biomaterial) and synthesis (of the sole natural bone) depending on the level of externally applied loads. The presence of a `lazy zone' associated with intermediate deformation levels is also considered in which neither resorption nor synthesis occur. Some numerical solutions of the integro-differential equations associated with the proposed model are provided for the two-dimensional case. Ranges of values of the parameters for which different percentages of biomaterial substitution occur are proposed, namely parameters characterizing initial and maximum values of mass densities of bone tissue and of the bio-resorbable material.

  3. Modeling and optimization of an elastic arthroplastic disc for a degenerated disc

    NASA Astrophysics Data System (ADS)

    Ghouchani, Azadeh; Ravari, Mohammad; Mahmoudi, Farid

    2011-10-01

    A three-dimensional finite element model (FEM) of the L3-L4 motion segment using ABAQUS v 6.9 has been developed. The model took into account the material nonlinearities and is imposed different loading conditions. In this study, we validated the model by comparison of its predictions with several sets of experimental data. Disc deformation under compression and segmental rotational motions under moment loads for the normal disc model agreed well with the corresponding in vivo studies. By linking ABAQUS with MATLAB 2010.a, we determined the optimal Young s modulus as well as the Poisson's ratio for the artificial disc under different physiologic loading conditions. The results of the present study confirmed that a well-designed elastic arthroplastic disc preferably has an annulus modulus of 19.1 MPa and 1.24 MPa for nucleus section and Poisson ratio of 0.41 and 0.47 respectively. Elastic artificial disc with such properties can then achieve the goal of restoring the disc height and mechanical function of intact disc under different loading conditions and so can reduce low back pain which is mostly caused due to disc degeneration.

  4. Contractile network models for adherent cells.

    PubMed

    Guthardt Torres, P; Bischofs, I B; Schwarz, U S

    2012-01-01

    Cells sense the geometry and stiffness of their adhesive environment by active contractility. For strong adhesion to flat substrates, two-dimensional contractile network models can be used to understand how force is distributed throughout the cell. Here we compare the shape and force distribution for different variants of such network models. In contrast to Hookean networks, cable networks reflect the asymmetric response of biopolymers to tension versus compression. For passive networks, contractility is modeled by a reduced resting length of the mechanical links. In actively contracting networks, a constant force couple is introduced into each link in order to model contraction by molecular motors. If combined with fixed adhesion sites, all network models lead to invaginated cell shapes, but only actively contracting cable networks lead to the circular arc morphology typical for strongly adhering cells. In this case, shape and force distribution are determined by local rather than global determinants and thus are suited to endow the cell with a robust sense of its environment. We also discuss nonlinear and adaptive linker mechanics as well as the relation to tissue shape. PMID:22400597

  5. Contractile network models for adherent cells

    NASA Astrophysics Data System (ADS)

    Guthardt Torres, P.; Bischofs, I. B.; Schwarz, U. S.

    2012-01-01

    Cells sense the geometry and stiffness of their adhesive environment by active contractility. For strong adhesion to flat substrates, two-dimensional contractile network models can be used to understand how force is distributed throughout the cell. Here we compare the shape and force distribution for different variants of such network models. In contrast to Hookean networks, cable networks reflect the asymmetric response of biopolymers to tension versus compression. For passive networks, contractility is modeled by a reduced resting length of the mechanical links. In actively contracting networks, a constant force couple is introduced into each link in order to model contraction by molecular motors. If combined with fixed adhesion sites, all network models lead to invaginated cell shapes, but only actively contracting cable networks lead to the circular arc morphology typical for strongly adhering cells. In this case, shape and force distribution are determined by local rather than global determinants and thus are suited to endow the cell with a robust sense of its environment. We also discuss nonlinear and adaptive linker mechanics as well as the relation to tissue shape.

  6. Modeling Evolution of Weighted Clique Networks

    NASA Astrophysics Data System (ADS)

    Yang, Xu-Hua; Jiang, Feng-Ling; Chen, Sheng-Yong; Wang, Wan-Liang

    2011-11-01

    We propose a weighted clique network evolution model, which expands continuously by the addition of a new clique (maximal complete sub-graph) at each time step. And the cliques in the network overlap with each other. The structural expansion of the weighted clique network is combined with the edges' weight and vertices' strengths dynamical evolution. The model is based on a weight-driven dynamics and a weights' enhancement mechanism combining with the network growth. We study the network properties, which include the distribution of vertices' strength and the distribution of edges' weight, and find that both the distributions follow the scale-free distribution. At the same time, we also find that the relationship between strength and degree of a vertex are linear correlation during the growth of the network. On the basis of mean-field theory, we study the weighted network model and prove that both vertices' strength and edges' weight of this model follow the scale-free distribution. And we exploit an algorithm to forecast the network dynamics, which can be used to reckon the distributions and the corresponding scaling exponents. Furthermore, we observe that mean-field based theoretic results are consistent with the statistical data of the model, which denotes the theoretical result in this paper is effective.

  7. Reduced-Order Modeling for Flutter/LCO Using Recurrent Artificial Neural Network

    NASA Technical Reports Server (NTRS)

    Yao, Weigang; Liou, Meng-Sing

    2012-01-01

    The present study demonstrates the efficacy of a recurrent artificial neural network to provide a high fidelity time-dependent nonlinear reduced-order model (ROM) for flutter/limit-cycle oscillation (LCO) modeling. An artificial neural network is a relatively straightforward nonlinear method for modeling an input-output relationship from a set of known data, for which we use the radial basis function (RBF) with its parameters determined through a training process. The resulting RBF neural network, however, is only static and is not yet adequate for an application to problems of dynamic nature. The recurrent neural network method [1] is applied to construct a reduced order model resulting from a series of high-fidelity time-dependent data of aero-elastic simulations. Once the RBF neural network ROM is constructed properly, an accurate approximate solution can be obtained at a fraction of the cost of a full-order computation. The method derived during the study has been validated for predicting nonlinear aerodynamic forces in transonic flow and is capable of accurate flutter/LCO simulations. The obtained results indicate that the present recurrent RBF neural network is accurate and efficient for nonlinear aero-elastic system analysis

  8. Homophyly/Kinship Model: Naturally Evolving Networks

    NASA Astrophysics Data System (ADS)

    Li, Angsheng; Li, Jiankou; Pan, Yicheng; Yin, Xianchen; Yong, Xi

    2015-10-01

    It has been a challenge to understand the formation and roles of social groups or natural communities in the evolution of species, societies and real world networks. Here, we propose the hypothesis that homophyly/kinship is the intrinsic mechanism of natural communities, introduce the notion of the affinity exponent and propose the homophyly/kinship model of networks. We demonstrate that the networks of our model satisfy a number of topological, probabilistic and combinatorial properties and, in particular, that the robustness and stability of natural communities increase as the affinity exponent increases and that the reciprocity of the networks in our model decreases as the affinity exponent increases. We show that both homophyly/kinship and reciprocity are essential to the emergence of cooperation in evolutionary games and that the homophyly/kinship and reciprocity determined by the appropriate affinity exponent guarantee the emergence of cooperation in evolutionary games, verifying Darwin’s proposal that kinship and reciprocity are the means of individual fitness. We propose the new principle of structure entropy minimisation for detecting natural communities of networks and verify the functional module property and characteristic properties by a healthy tissue cell network, a citation network, some metabolic networks and a protein interaction network.

  9. Homophyly/Kinship Model: Naturally Evolving Networks

    PubMed Central

    Li, Angsheng; Li, Jiankou; Pan, Yicheng; Yin, Xianchen; Yong, Xi

    2015-01-01

    It has been a challenge to understand the formation and roles of social groups or natural communities in the evolution of species, societies and real world networks. Here, we propose the hypothesis that homophyly/kinship is the intrinsic mechanism of natural communities, introduce the notion of the affinity exponent and propose the homophyly/kinship model of networks. We demonstrate that the networks of our model satisfy a number of topological, probabilistic and combinatorial properties and, in particular, that the robustness and stability of natural communities increase as the affinity exponent increases and that the reciprocity of the networks in our model decreases as the affinity exponent increases. We show that both homophyly/kinship and reciprocity are essential to the emergence of cooperation in evolutionary games and that the homophyly/kinship and reciprocity determined by the appropriate affinity exponent guarantee the emergence of cooperation in evolutionary games, verifying Darwin’s proposal that kinship and reciprocity are the means of individual fitness. We propose the new principle of structure entropy minimisation for detecting natural communities of networks and verify the functional module property and characteristic properties by a healthy tissue cell network, a citation network, some metabolic networks and a protein interaction network. PMID:26478264

  10. Homophyly/Kinship Model: Naturally Evolving Networks.

    PubMed

    Li, Angsheng; Li, Jiankou; Pan, Yicheng; Yin, Xianchen; Yong, Xi

    2015-01-01

    It has been a challenge to understand the formation and roles of social groups or natural communities in the evolution of species, societies and real world networks. Here, we propose the hypothesis that homophyly/kinship is the intrinsic mechanism of natural communities, introduce the notion of the affinity exponent and propose the homophyly/kinship model of networks. We demonstrate that the networks of our model satisfy a number of topological, probabilistic and combinatorial properties and, in particular, that the robustness and stability of natural communities increase as the affinity exponent increases and that the reciprocity of the networks in our model decreases as the affinity exponent increases. We show that both homophyly/kinship and reciprocity are essential to the emergence of cooperation in evolutionary games and that the homophyly/kinship and reciprocity determined by the appropriate affinity exponent guarantee the emergence of cooperation in evolutionary games, verifying Darwin's proposal that kinship and reciprocity are the means of individual fitness. We propose the new principle of structure entropy minimisation for detecting natural communities of networks and verify the functional module property and characteristic properties by a healthy tissue cell network, a citation network, some metabolic networks and a protein interaction network. PMID:26478264

  11. Single-molecule elasticity of single-stranded DNA, a model flexible polyelectrolyte

    NASA Astrophysics Data System (ADS)

    McIntosh, Dustin B.

    Understanding the structure of unfolded, flexible polyelectrolytes is important for our comprehension of basic processes in molecular biology (e.g., RNA and protein folding) and our ability to exploit the polymers in technology (e.g., in self-assembled nanostructures). Here, we investigate the structure of single single-stranded DNA molecules and their interactions with ions using magnetic tweezers. Our data reveal that single-stranded DNA is not well-described by ideal polymer models such as the Worm-Like Chain. At low force, we report the first experimental observation of a nonlinear elastic regime revealing the relevance of long-range excluded volume effects. At high force, the extension scales as a logarithm in monovalent salt. Molecular dynamics simulations indicate that this logarithmic regime is the result of ion-stabilized wrinkles at short-length scales along the polymer backbone. Addition of divalent salt to the buffer results in enhanced elasticity indicating increased wrinkling or polymer ''wrapping" around the divalent ions. Using a thermodynamic identity, we are able to count ions as they are released into the bulk upon polymer elongation. We find that ssDNA releases significantly more ions than dsDNA. We posit that the recently termed ''Snake-Like Chain" model (Ullner, J. Phys. Chem B (2003)) for flexible polyelectrolytes may explain these observations. As a first step towards characterizing biologically relevant nucleic acid structures, we measure the effects of base-stacking on ssDNA elasticity. We find that base-stacking in poly(dA) significantly enhances the rigidity of the polymer as evidenced by the low-force elasticity. The unstacking transition of poly(dA) at high force reveals that the intrinsic electrostatic tension on the molecule varies significantly more weakly on salt concentration than predictions from mean-field models. Further, we provide a model-independent estimate of the free energy difference between stacked and unstacked nucleic

  12. Role models for complex networks

    NASA Astrophysics Data System (ADS)

    Reichardt, J.; White, D. R.

    2007-11-01

    We present a framework for automatically decomposing (“block-modeling”) the functional classes of agents within a complex network. These classes are represented by the nodes of an image graph (“block model”) depicting the main patterns of connectivity and thus functional roles in the network. Using a first principles approach, we derive a measure for the fit of a network to any given image graph allowing objective hypothesis testing. From the properties of an optimal fit, we derive how to find the best fitting image graph directly from the network and present a criterion to avoid overfitting. The method can handle both two-mode and one-mode data, directed and undirected as well as weighted networks and allows for different types of links to be dealt with simultaneously. It is non-parametric and computationally efficient. The concepts of structural equivalence and modularity are found as special cases of our approach. We apply our method to the world trade network and analyze the roles individual countries play in the global economy.

  13. Predicting the elastic properties of selective laser sintered PCL/β-TCP bone scaffold materials using computational modelling.

    PubMed

    Doyle, Heather; Lohfeld, Stefan; McHugh, Peter

    2014-03-01

    This study assesses the ability of finite element (FE) models to capture the mechanical behaviour of sintered orthopaedic scaffold materials. Individual scaffold struts were fabricated from a 50:50 wt% poly-ε-caprolactone (PCL)/β-tricalcium phosphate (β-TCP) blend, using selective laser sintering. The tensile elastic modulus of single struts was determined experimentally. High resolution FE models of single struts were generated from micro-CT scans (28.8 μm resolution) and an effective strut elastic modulus was calculated from tensile loading simulations. Three material assignment methods were employed: (1) homogeneous PCL elastic constants, (2) composite PCL/β-TCP elastic constants based on rule of mixtures, and (3) heterogeneous distribution of micromechanically-determined elastic constants. In comparison with experimental results, the use of homogeneous PCL properties gave a good estimate of strut modulus; however it is not sufficiently representative of the real material as it neglects the β-TCP phase. The rule of mixtures method significantly overestimated strut modulus, while there was no significant difference between strut modulus evaluated using the micromechanically-determined elastic constants and experimentally evaluated strut modulus. These results indicate that the multi-scale approach of linking micromechanical modelling of the sintered scaffold material with macroscale modelling gives an accurate prediction of the mechanical behaviour of the sintered structure. PMID:24057867

  14. Using Modified J-A model in MMM detection at elastic stress stage

    NASA Astrophysics Data System (ADS)

    Xu, MingXiu; Xu, MinQiang; Li, JianWei; Xing, HaiYan

    2012-06-01

    In order to propel the development of metal magnetic memory (MMM) technique in fatigue damage detection, a modified Jiles-Atherton (J-A) model is constructed to describe MMM mechanism in elastic stress stage. The MMM phenomenon is discussed from the view of energy minimum theory and equivalent magnetic field theory, the modified J-A model is constructed based on the energy balance in the process of magnetisation and the idea of J-A model, and the new model is used to simulate magnetomechanical effect by Matlab and compare with experimental results. It is shown that the forming process of MMM field is cyclic magnetisation in the range of equivalent magnetic field and the MMM field moves irreversibly towards a local equilibrium state ? . ? is the intermediate state with some pinning before M reaches the anhysteretic magnetisation state ? . The ? curve is a loop around the ? curve, and it changes with ? , H and the type of stress cycle. The modified J-A model that is suited for MMM detection is constructed by replacing ? in J-A model with ? and changing some parameters, and it can describe magnetisation features in tension, release processes better and explain the changes in the sign of ? that have been observed in experiments more reasonably. The modified J-A model can simulate the process of MMM field to become steady and the MMM field variation at fatigue process theoretically by changing model parameters, which is confirmed by experimental results. The results of theoretical research, simulation analysis and experiment verification all indicate that the modified J-A model can be used to describe MMM mechanism in elastic stress stage and analyse MMM field changes at fatigue process.

  15. Service models and realization of differentiated services networks

    NASA Astrophysics Data System (ADS)

    Elizondo, Antonio J.; Garcia Osma, Maria L.; Einsiedler, Hans J.; Roth, Rudolf; Smirnov, Michael I.; Bartoli, Maurizio; Castelli, Paolo; Varga, Balazs; Krampell, Magnus

    2001-07-01

    Internet Service Providers need to offer Quality of Service (QoS) to fulfil the requirements of applications of their customers. Moreover, in a competitive market environment costs must be low. The selected service model must be effective and low in complexity, but it should still provide high quality and service differentiation, that the current Internet is not yet capable to support. The Differentiated Services (DiffServ) Architecture has been proposed for enabling a range of different Classes of Service (CoS). In the EURESCOM project P1006 several European service providers co-operated to examine various aspects involved in the introduction of service differentiation using the DiffServ approach. The project explored a set of service models for Expedited Forwarding (EF) and Assured Forwarding (AF) and identified requirements for network nodes. Besides, we addressed also measurement issues, charging and accounting issues. Special attention has been devoted to requirements of elastic traffic that adapts its sending rate to congestion state and available bandwidth. QoS mechanisms must prove Transmission Control Protocol (TCP) friendliness. TCP performance degrades under multiple losses. Since RED based queue management may still cause multiple discards, a modified marking scheme called Capped Leaky Bucket is proposed to improve the performance of elastic applications.

  16. Evaluating network models: A likelihood analysis

    NASA Astrophysics Data System (ADS)

    Wang, Wen-Qiang; Zhang, Qian-Ming; Zhou, Tao

    2012-04-01

    Many models are put forward to mimic the evolution of real networked systems. A well-accepted way to judge the validity is to compare the modeling results with real networks subject to several structural features. Even for a specific real network, we cannot fairly evaluate the goodness of different models since there are too many structural features while there is no criterion to select and assign weights on them. Motivated by the studies on link prediction algorithms, we propose a unified method to evaluate the network models via the comparison of the likelihoods of the currently observed network driven by different models, with an assumption that the higher the likelihood is, the more accurate the model is. We test our method on the real Internet at the Autonomous System (AS) level, and the results suggest that the Generalized Linear Preferential (GLP) model outperforms the Tel Aviv Network Generator (Tang), while both two models are better than the Barabási-Albert (BA) and Erdös-Rényi (ER) models. Our method can be further applied in determining the optimal values of parameters that correspond to the maximal likelihood. The experiment indicates that the parameters obtained by our method can better capture the characters of newly added nodes and links in the AS-level Internet than the original methods in the literature.

  17. Correlated Logistic Model With Elastic Net Regularization for Multilabel Image Classification.

    PubMed

    Li, Qiang; Xie, Bo; You, Jane; Bian, Wei; Tao, Dacheng

    2016-08-01

    In this paper, we present correlated logistic (CorrLog) model for multilabel image classification. CorrLog extends conventional logistic regression model into multilabel cases, via explicitly modeling the pairwise correlation between labels. In addition, we propose to learn the model parameters of CorrLog with elastic net regularization, which helps exploit the sparsity in feature selection and label correlations and thus further boost the performance of multilabel classification. CorrLog can be efficiently learned, though approximately, by regularized maximum pseudo likelihood estimation, and it enjoys a satisfying generalization bound that is independent of the number of labels. CorrLog performs competitively for multilabel image classification on benchmark data sets MULAN scene, MIT outdoor scene, PASCAL VOC 2007, and PASCAL VOC 2012, compared with the state-of-the-art multilabel classification algorithms. PMID:27295670

  18. A mathematical model for the deformation of the eyeball by an elastic band.

    PubMed

    Keeling, Stephen L; Propst, Georg; Stadler, Georg; Wackernagel, Werner

    2009-06-01

    In a certain kind of eye surgery, the human eyeball is deformed sustainably by the application of an elastic band. This article presents a mathematical model for the mechanics of the combined eye/band structure along with an algorithm to compute the model solutions. These predict the immediate and the lasting indentation of the eyeball. The model is derived from basic physical principles by minimizing a potential energy subject to a volume constraint. Assuming spherical symmetry, this leads to a two-point boundary-value problem for a non-linear second-order ordinary differential equation that describes the minimizing static equilibrium. By comparison with laboratory data, a preliminary validation of the model is given. PMID:19351791

  19. Application of an Uncoupled Elastic-plastic-creep Constitutive Model to Metals at High Temperature

    NASA Technical Reports Server (NTRS)

    Haisler, W. E.

    1983-01-01

    A uniaxial, uncoupled constitutive model to predict the response of thermal and rate dependent elastic-plastic material behavior is presented. The model is based on an incremental classicial plasticity theory extended to account for thermal, creep, and transient temperature conditions. Revisions to he combined hardening rule of the theory allow for better representation of cyclic phenomenon including the high rate of strain hardening upon cyclic reyield and cyclic saturation. An alternative approach is taken to model the rate dependent inelastic deformation which utilizes hysteresis loops and stress relaxation test data at various temperatures. The model is evaluated and compared to experiments which involve various thermal and mechanical load histories on 5086 aluminum alloy, 304 stainless steel and Hastelloy-X.

  20. An endogenous model of the credit network

    NASA Astrophysics Data System (ADS)

    He, Jianmin; Sui, Xin; Li, Shouwei

    2016-01-01

    In this paper, an endogenous credit network model of firm-bank agents is constructed. The model describes the endogenous formation of firm-firm, firm-bank and bank-bank credit relationships. By means of simulations, the model is capable of showing some obvious similarities with empirical evidence found by other scholars: the upper-tail of firm size distribution can be well fitted with a power-law; the bank size distribution can be lognormally distributed with a power-law tail; the bank in-degrees of the interbank credit network as well as the firm-bank credit network fall into two-power-law distributions.

  1. Nonlocal-integro-differential modeling of vibration of elastically supported nanorods

    NASA Astrophysics Data System (ADS)

    Kiani, Keivan

    2016-09-01

    In the previously established nonlocal continuum-based models, small characteristic length was commonly incorporated into the mass matrix and the driving force vector which is a bit in contradiction with our sense regarding these factors. Herein, a nonlocal-integro-differential version of the constitutive relations is employed for the bulk and the surface layer of the nanorod. By adopting Hamilton's principle, integro-partial differential equations of motion of elastically supported nanorods are established accounting for both nonlocality and surface energy effects. Then, these are solved by an efficient meshless methodology. For fixed-fixed and fixed-free nanorods, modal analysis of the problem is also performed and the explicit expressions of the mass and stiffness matrices are derived. For these special cases, the obtained results by the meshless technique are successfully verified with those of the modal solution. In the newly developed numerical model, the small-scale parameter is only incorporated into the stiffness matrix which gives us a more realistic sense about the nonlocality effect. Subsequently, the roles of the surface energy, small-scale parameter, elastic supports, and kernel function on natural frequencies of the nanostructure are discussed and explained. This work can be considered as a pivotal step towards a more reasonable nonlocal modeling of vibration of nanoscale structures.

  2. Micromechanical modeling of elastic properties of cortical bone accounting for anisotropy of dense tissue.

    PubMed

    Salguero, Laura; Saadat, Fatemeh; Sevostianov, Igor

    2014-10-17

    The paper analyzes the connection between microstructure of the osteonal cortical bone and its overall elastic properties. The existing models either neglect anisotropy of the dense tissue or simplify cortical bone microstructure (accounting for Haversian canals only). These simplifications (related mostly to insufficient mathematical apparatus) complicate quantitative analysis of the effect of microstructural changes - produced by age, microgravity, or some diseases - on the overall mechanical performance of cortical bone. The present analysis fills this gap; it accounts for anisotropy of the dense tissue and uses realistic model of the porous microstructure. The approach is based on recent results of Sevostianov et al. (2005) and Saadat et al. (2012) on inhomogeneities in a transversely-isotropic material. Bone's microstructure is modeled according to books of Martin and Burr (1989), Currey (2002), and Fung (1993) and includes four main families of pores. The calculated elastic constants for porous cortical bone are in agreement with available experimental data. The influence of each of the pore types on the overall moduli is examined. PMID:25234350

  3. A molecular model for the free energy, bending elasticity, and persistence length of wormlike micelles.

    PubMed

    Asgari, Meisam

    2015-09-01

    An expression for the elastic free-energy density of a wormlike micelle is derived taking into account interactions between its constituent molecules. The resulting expression is quadratic in the curvature and torsion of the centerline of micelle and thus resembles free-energy density functions for polymer chains and helical filaments such as DNA. The model is applied on a wormlike micelle in the shape of a circular arc, open or closed. Conditions under which linear chains in dilute systems transform into toroidal rings are analyzed. Two concrete anisotropic soft-core interaction potentials are used to calculate the elastic moduli present in the derived model, in terms of the density of the molecules and their dimensions. Expressions for the persistence length of the wormlike micelle are found based on the flexural rigidities so obtained. Similar to previous observations, our results indicate that the persistence length of a wormlike micelle increases as the aspect ratio of its constituent molecules increases. A detailed application of the model on wormlike micelles of toroidal geometry, along with employing statistical-thermodynamical concepts of self-assembly is performed, and the results are found to be well consistent with the literature. Steps to obtain the material parameters through possible experiments are discussed. PMID:26362658

  4. Cyber threat model for tactical radio networks

    NASA Astrophysics Data System (ADS)

    Kurdziel, Michael T.

    2014-05-01

    The shift to a full information-centric paradigm in the battlefield has allowed ConOps to be developed that are only possible using modern network communications systems. Securing these Tactical Networks without impacting their capabilities has been a challenge. Tactical networks with fixed infrastructure have similar vulnerabilities to their commercial counterparts (although they need to be secure against adversaries with greater capabilities, resources and motivation). However, networks with mobile infrastructure components and Mobile Ad hoc Networks (MANets) have additional unique vulnerabilities that must be considered. It is useful to examine Tactical Network based ConOps and use them to construct a threat model and baseline cyber security requirements for Tactical Networks with fixed infrastructure, mobile infrastructure and/or ad hoc modes of operation. This paper will present an introduction to threat model assessment. A definition and detailed discussion of a Tactical Network threat model is also presented. Finally, the model is used to derive baseline requirements that can be used to design or evaluate a cyber security solution that can be scaled and adapted to the needs of specific deployments.

  5. Multiscaling in an YX model of networks

    NASA Astrophysics Data System (ADS)

    Holme, Petter; Wu, Zhi-Xi; Minnhagen, Petter

    2009-09-01

    We investigate a Hamiltonian model of networks. The model is a mirror formulation of the XY model (hence the name)—instead of letting the XY spins vary, keeping the coupling topology static, we keep the spins conserved and sample different underlying networks. Our numerical simulations show complex scaling behaviors with various exponents as the system grows and temperature approaches zero, but no finite-temperature universal critical behavior. The ground-state and low-order excitations for sparse, finite graphs are a fragmented set of isolated network clusters. Configurations of higher energy are typically more connected. The connected networks of lowest energy are stretched out giving the network large average distances. For the finite sizes we investigate, there are three regions—a low-energy regime of fragmented networks, an intermediate regime of stretched-out networks, and a high-energy regime of compact, disordered topologies. Scaling up the system size, the borders between these regimes approach zero temperature algebraically, but different network-structural quantities approach their T=0 values with different exponents. We argue this is a, perhaps rare, example of a statistical-physics model where finite sizes show a more interesting behavior than the thermodynamic limit.

  6. Stochastic discrete model of karstic networks

    NASA Astrophysics Data System (ADS)

    Jaquet, O.; Siegel, P.; Klubertanz, G.; Benabderrhamane, H.

    Karst aquifers are characterised by an extreme spatial heterogeneity that strongly influences their hydraulic behaviour and the transport of pollutants. These aquifers are particularly vulnerable to contamination because of their highly permeable networks of conduits. A stochastic model is proposed for the simulation of the geometry of karstic networks at a regional scale. The model integrates the relevant physical processes governing the formation of karstic networks. The discrete simulation of karstic networks is performed with a modified lattice-gas cellular automaton for a representative description of the karstic aquifer geometry. Consequently, more reliable modelling results can be obtained for the management and the protection of karst aquifers. The stochastic model was applied jointly with groundwater modelling techniques to a regional karst aquifer in France for the purpose of resolving surface pollution issues.

  7. Accuracy of the Generalized Self-Consistent Method in Modelling the Elastic Behaviour of Periodic Composites

    NASA Technical Reports Server (NTRS)

    Walker, Kevin P.; Freed, Alan D.; Jordan, Eric H.

    1993-01-01

    Local stress and strain fields in the unit cell of an infinite, two-dimensional, periodic fibrous lattice have been determined by an integral equation approach. The effect of the fibres is assimilated to an infinite two-dimensional array of fictitious body forces in the matrix constituent phase of the unit cell. By subtracting a volume averaged strain polarization term from the integral equation we effectively embed a finite number of unit cells in a homogenized medium in which the overall stress and strain correspond to the volume averaged stress and strain of the constrained unit cell. This paper demonstrates that the zeroth term in the governing integral equation expansion, which embeds one unit cell in the homogenized medium, corresponds to the generalized self-consistent approximation. By comparing the zeroth term approximation with higher order approximations to the integral equation summation, both the accuracy of the generalized self-consistent composite model and the rate of convergence of the integral summation can be assessed. Two example composites are studied. For a tungsten/copper elastic fibrous composite the generalized self-consistent model is shown to provide accurate, effective, elastic moduli and local field representations. The local elastic transverse stress field within the representative volume element of the generalized self-consistent method is shown to be in error by much larger amounts for a composite with periodically distributed voids, but homogenization leads to a cancelling of errors, and the effective transverse Young's modulus of the voided composite is shown to be in error by only 23% at a void volume fraction of 75%.

  8. Raingage network characteristics and runoff model error

    SciTech Connect

    Fontaine, T.A.

    1990-01-01

    Most runoff models require calibration using data from observed rainfall-runoff events. In situations where the existing raingage network is the sole source of rainfall data, the accuracy of the calibration can be very dependent on the characteristics of the gage network. The role of gage arrangement and density on the accuracy of basin average precipitation was evaluated using historic extreme rainfall data collected over very dense networks. It was found that data from networks with typical gage arrangements and densities could be a major source of error in situations commonly encountered in urban hydrology.

  9. Public transport networks: empirical analysis and modeling

    NASA Astrophysics Data System (ADS)

    von Ferber, C.; Holovatch, T.; Holovatch, Yu.; Palchykov, V.

    2009-03-01

    Public transport networks of fourteen cities of so far unexplored network size are analyzed in standardized graph representations: the simple graph of the network map, the bipartite graph of routes and stations, and both one mode projections of the latter. Special attention is paid to the inter-relations and spatial embedding of transport routes. This systematic approach reveals rich behavior beyond that of the ubiquitous scale-free complex network. We find strong evidence for structures in PTNs that are counter-intuitive and need to be explained, among these a pronounced diversity in the expression of typical network characteristics within the present sample of cities, a surprising geometrical behavior with respect to the two-dimensional geographical embedding and an unexpected attraction between transport routes. A simple model based on these observations reproduces many of the identified PTN properties by growing networks of attractive self-avoiding walks.

  10. Modeling Social Network Topologies in Elementary Schools

    PubMed Central

    Huerta-Quintanilla, Rodrigo; Canto-Lugo, Efrain; Viga-de Alva, Dolores

    2013-01-01

    Complex networks are used to describe interactions in many real world systems, including economic, biological and social systems. An analysis was done of inter-student friendship, enmity and kinship relationships at three elementary schools by building social networks of these relationships and studying their properties. Friendship network measurements were similar between schools and produced a Poisson topology with a high clustering index. Enmity network measurements were also similar between schools and produced a power law topology. Spatial confinement and the sense of belonging to a social group played vital roles in shaping these networks. Two models were developed which generate complex friendship and enmity networks that reproduce the properties observed at the three studied elementary schools. PMID:23408976

  11. Measuring and modeling correlations in multiplex networks.

    PubMed

    Nicosia, Vincenzo; Latora, Vito

    2015-09-01

    The interactions among the elementary components of many complex systems can be qualitatively different. Such systems are therefore naturally described in terms of multiplex or multilayer networks, i.e., networks where each layer stands for a different type of interaction between the same set of nodes. There is today a growing interest in understanding when and why a description in terms of a multiplex network is necessary and more informative than a single-layer projection. Here we contribute to this debate by presenting a comprehensive study of correlations in multiplex networks. Correlations in node properties, especially degree-degree correlations, have been thoroughly studied in single-layer networks. Here we extend this idea to investigate and characterize correlations between the different layers of a multiplex network. Such correlations are intrinsically multiplex, and we first study them empirically by constructing and analyzing several multiplex networks from the real world. In particular, we introduce various measures to characterize correlations in the activity of the nodes and in their degree at the different layers and between activities and degrees. We show that real-world networks exhibit indeed nontrivial multiplex correlations. For instance, we find cases where two layers of the same multiplex network are positively correlated in terms of node degrees, while other two layers are negatively correlated. We then focus on constructing synthetic multiplex networks, proposing a series of models to reproduce the correlations observed empirically and/or to assess their relevance. PMID:26465526

  12. Measuring and modeling correlations in multiplex networks

    NASA Astrophysics Data System (ADS)

    Nicosia, Vincenzo; Latora, Vito

    2015-09-01

    The interactions among the elementary components of many complex systems can be qualitatively different. Such systems are therefore naturally described in terms of multiplex or multilayer networks, i.e., networks where each layer stands for a different type of interaction between the same set of nodes. There is today a growing interest in understanding when and why a description in terms of a multiplex network is necessary and more informative than a single-layer projection. Here we contribute to this debate by presenting a comprehensive study of correlations in multiplex networks. Correlations in node properties, especially degree-degree correlations, have been thoroughly studied in single-layer networks. Here we extend this idea to investigate and characterize correlations between the different layers of a multiplex network. Such correlations are intrinsically multiplex, and we first study them empirically by constructing and analyzing several multiplex networks from the real world. In particular, we introduce various measures to characterize correlations in the activity of the nodes and in their degree at the different layers and between activities and degrees. We show that real-world networks exhibit indeed nontrivial multiplex correlations. For instance, we find cases where two layers of the same multiplex network are positively correlated in terms of node degrees, while other two layers are negatively correlated. We then focus on constructing synthetic multiplex networks, proposing a series of models to reproduce the correlations observed empirically and/or to assess their relevance.

  13. Comparison of elastic-viscous-plastic and viscous-plastic dynamics models using a high resolution Arctic sea ice model

    SciTech Connect

    Hunke, E.C.; Zhang, Y.

    1997-12-31

    A nonlinear viscous-plastic (VP) rheology proposed by Hibler (1979) has been demonstrated to be the most suitable of the rheologies commonly used for modeling sea ice dynamics. However, the presence of a huge range of effective viscosities hinders numerical implementations of this model, particularly on high resolution grids or when the ice model is coupled to an ocean or atmosphere model. Hunke and Dukowicz (1997) have modified the VP model by including elastic waves as a numerical regularization in the case of zero strain rate. This modification (EVP) allows an efficient, fully explicit discretization that adapts well to parallel architectures. The authors present a comparison of EVP and VP dynamics model results from two 5-year simulations of Arctic sea ice, obtained with a high resolution sea ice model. The purpose of the comparison is to determine how differently the two dynamics models behave, and to decide whether the elastic-viscous-plastic model is preferable for high resolution climate simulations, considering its high efficiency in parallel computation. Results from the first year of this experiment (1990) are discussed in detail in Hunke and Zhang (1997).

  14. Model for rumor spreading over networks

    NASA Astrophysics Data System (ADS)

    Trpevski, Daniel; Tang, Wallace K. S.; Kocarev, Ljupco

    2010-05-01

    An alternate model for rumor spreading over networks is suggested, in which two rumors (termed rumor 1 and rumor 2) with different probabilities of acceptance may propagate among nodes. The propagation is not symmetric in the sense that when deciding which rumor to adopt, nodes always consider rumor 1 first. The model is a natural generalization of the well-known epidemic SIS (susceptible-infective-susceptible) model and reduces to it when some of the parameters of this model are zero. We find that preferred rumor 1 is dominant in the network when the degree of nodes is high enough and/or when the network contains large clustered groups of nodes, expelling rumor 2. However, numerical simulations on synthetic networks show that it is possible for rumor 2 to occupy a nonzero fraction of the nodes in many cases as well. Specifically, in the Watts-Strogatz small-world model a moderate level of clustering supports its adoption, while increasing randomness reduces it. For Erdos-Renyi networks, a low average degree allows the coexistence of the two types of rumors. In Barabasi-Albert networks generated with a low m , where m is the number of links when a new node is added, it is also possible for rumor 2 to spread over the network.

  15. On the consistency between nearest-neighbor peridynamic discretizations and discretized classical elasticity models

    DOE PAGESBeta

    Seleson, Pablo; Du, Qiang; Parks, Michael L.

    2016-08-16

    The peridynamic theory of solid mechanics is a nonlocal reformulation of the classical continuum mechanics theory. At the continuum level, it has been demonstrated that classical (local) elasticity is a special case of peridynamics. Such a connection between these theories has not been extensively explored at the discrete level. This paper investigates the consistency between nearest-neighbor discretizations of linear elastic peridynamic models and finite difference discretizations of the Navier–Cauchy equation of classical elasticity. While nearest-neighbor discretizations in peridynamics have been numerically observed to present grid-dependent crack paths or spurious microcracks, this paper focuses on a different, analytical aspect of suchmore » discretizations. We demonstrate that, even in the absence of cracks, such discretizations may be problematic unless a proper selection of weights is used. Specifically, we demonstrate that using the standard meshfree approach in peridynamics, nearest-neighbor discretizations do not reduce, in general, to discretizations of corresponding classical models. We study nodal-based quadratures for the discretization of peridynamic models, and we derive quadrature weights that result in consistency between nearest-neighbor discretizations of peridynamic models and discretized classical models. The quadrature weights that lead to such consistency are, however, model-/discretization-dependent. We motivate the choice of those quadrature weights through a quadratic approximation of displacement fields. The stability of nearest-neighbor peridynamic schemes is demonstrated through a Fourier mode analysis. Finally, an approach based on a normalization of peridynamic constitutive constants at the discrete level is explored. This approach results in the desired consistency for one-dimensional models, but does not work in higher dimensions. The results of the work presented in this paper suggest that even though nearest

  16. Sound transmission through lined, composite panel structures: Transversely isotropic poro-elastic model

    NASA Astrophysics Data System (ADS)

    Kim, Jeong-Woo

    A joint experimental and analytical investigation of the sound transmission loss (STL) and two-dimensional free wave propagation in composite sandwich panels is presented here. An existing panel, a Nomex honeycomb sandwich panel, was studied in detail. For the purpose of understanding the typical behavior of sandwich panels, a composite structure comprising two aluminum sheets with a relatively soft, poro-elastic foam core was also constructed and studied. The cores of both panels were modeled using an anisotropic (transversely isotropic) poro-elastic material theory. Several estimation methods were used to obtain the material properties of the honeycomb core and the skin plates to be used in the numerical calculations. Appropriate values selected from among the estimates were used in the STL and free wave propagation models. The prediction model was then verified in two ways: first, the calculated wave speeds and STL of a single poro-elastic layer were numerically verified by comparison with the predictions of a previously developed isotropic model. Secondly, to physically validate the transversely isotropic model, the measured STL and the phase speeds of the sandwich panels were compared with their predicted values. To analyze the actual treatment of a fuselage structure, multi-layered configurations, including a honeycomb panel and several layers such as air gaps, acoustic blankets and membrane partitions, were formulated. Then, to find the optimal solution for improving the sound barrier performance of an actual fuselage system, air layer depth and glass fiber lining effects were investigated by using these multi-layer models. By using the free wave propagation model, the first anti-symmetric and symmetric modes of the sandwich panels were characterized to allow the identification of the coincidence frequencies of the sandwich panel. The behavior of the STL could then be clearly explained by comparison with the free wave propagation solutions. By performing a

  17. Reconstruction of elasticity: a stochastic model-based approach in ultrasound elastography

    PubMed Central

    2013-01-01

    Background The convectional strain-based algorithm has been widely utilized in clinical practice. It can only provide the information of relative information of tissue stiffness. However, the exact information of tissue stiffness should be valuable for clinical diagnosis and treatment. Methods In this study we propose a reconstruction strategy to recover the mechanical properties of the tissue. After the discrepancies between the biomechanical model and data are modeled as the process noise, and the biomechanical model constraint is transformed into a state space representation the reconstruction of elasticity can be accomplished through one filtering identification process, which is to recursively estimate the material properties and kinematic functions from ultrasound data according to the minimum mean square error (MMSE) criteria. In the implementation of this model-based algorithm, the linear isotropic elasticity is adopted as the biomechanical constraint. The estimation of kinematic functions (i.e., the full displacement and velocity field), and the distribution of Young’s modulus are computed simultaneously through an extended Kalman filter (EKF). Results In the following experiments the accuracy and robustness of this filtering framework is first evaluated on synthetic data in controlled conditions, and the performance of this framework is then evaluated in the real data collected from elastography phantom and patients using the ultrasound system. Quantitative analysis verifies that strain fields estimated by our filtering strategy are more closer to the ground truth. The distribution of Young’s modulus is also well estimated. Further, the effects of measurement noise and process noise have been investigated as well. Conclusions The advantage of this model-based algorithm over the conventional strain-based algorithm is its potential of providing the distribution of elasticity under a proper biomechanical model constraint. We address the model

  18. Symbolic regression of generative network models

    NASA Astrophysics Data System (ADS)

    Menezes, Telmo; Roth, Camille

    2014-09-01

    Networks are a powerful abstraction with applicability to a variety of scientific fields. Models explaining their morphology and growth processes permit a wide range of phenomena to be more systematically analysed and understood. At the same time, creating such models is often challenging and requires insights that may be counter-intuitive. Yet there currently exists no general method to arrive at better models. We have developed an approach to automatically detect realistic decentralised network growth models from empirical data, employing a machine learning technique inspired by natural selection and defining a unified formalism to describe such models as computer programs. As the proposed method is completely general and does not assume any pre-existing models, it can be applied ``out of the box'' to any given network. To validate our approach empirically, we systematically rediscover pre-defined growth laws underlying several canonical network generation models and credible laws for diverse real-world networks. We were able to find programs that are simple enough to lead to an actual understanding of the mechanisms proposed, namely for a simple brain and a social network.

  19. Monochromaticity in neutral evolutionary network models.

    PubMed

    Halu, Arda; Bianconi, Ginestra

    2012-12-01

    Recent studies on epistatic networks of model organisms have unveiled a certain type of modular property called monochromaticity in which the networks are clustered into functional modules that interact with each other through the same type of epistasis. Here, we propose and study three epistatic network models that are inspired by the duplication-divergence mechanism to gain insight into the evolutionary basis of monochromaticity and to test if it can be explained as the outcome of a neutral evolutionary hypothesis. We show that the epistatic networks formed by these stochastic evolutionary models have monochromaticity conflict distributions that are centered close to zero and are statistically significantly different from their randomized counterparts. In particular, the last model we propose yields a strictly monochromatic solution. Our results agree with the monochromaticity findings in real organisms and point toward the possible role of a neutral mechanism in the evolution of this phenomenon. PMID:23367998

  20. Gene Regulation Networks for Modeling Drosophila Development

    NASA Technical Reports Server (NTRS)

    Mjolsness, E.

    1999-01-01

    This chapter will very briefly introduce and review some computational experiments in using trainable gene regulation network models to simulate and understand selected episodes in the development of the fruit fly, Drosophila Melanogaster.

  1. Monochromaticity in neutral evolutionary network models

    NASA Astrophysics Data System (ADS)

    Halu, Arda; Bianconi, Ginestra

    2012-12-01

    Recent studies on epistatic networks of model organisms have unveiled a certain type of modular property called monochromaticity in which the networks are clustered into functional modules that interact with each other through the same type of epistasis. Here, we propose and study three epistatic network models that are inspired by the duplication-divergence mechanism to gain insight into the evolutionary basis of monochromaticity and to test if it can be explained as the outcome of a neutral evolutionary hypothesis. We show that the epistatic networks formed by these stochastic evolutionary models have monochromaticity conflict distributions that are centered close to zero and are statistically significantly different from their randomized counterparts. In particular, the last model we propose yields a strictly monochromatic solution. Our results agree with the monochromaticity findings in real organisms and point toward the possible role of a neutral mechanism in the evolution of this phenomenon.

  2. Graphical Model Theory for Wireless Sensor Networks

    SciTech Connect

    Davis, William B.

    2002-12-08

    Information processing in sensor networks, with many small processors, demands a theory of computation that allows the minimization of processing effort, and the distribution of this effort throughout the network. Graphical model theory provides a probabilistic theory of computation that explicitly addresses complexity and decentralization for optimizing network computation. The junction tree algorithm, for decentralized inference on graphical probability models, can be instantiated in a variety of applications useful for wireless sensor networks, including: sensor validation and fusion; data compression and channel coding; expert systems, with decentralized data structures, and efficient local queries; pattern classification, and machine learning. Graphical models for these applications are sketched, and a model of dynamic sensor validation and fusion is presented in more depth, to illustrate the junction tree algorithm.

  3. Elastic-plastic analysis of AS4/PEEK composite laminate using a one-parameter plasticity model

    NASA Technical Reports Server (NTRS)

    Sun, C. T.; Yoon, K. J.

    1992-01-01

    A one-parameter plasticity model was shown to adequately describe the plastic deformation of AS4/PEEK (APC-2) unidirectional thermoplastic composite. This model was verified further for unidirectional and laminated composite panels with and without a hole. The elastic-plastic stress-strain relations of coupon specimens were measured and compared with those predicted by the finite element analysis using the one-parameter plasticity model. The results show that the one-parameter plasticity model is suitable for the analysis of elastic-plastic deformation of AS4/PEEK composite laminates.

  4. Thermo-elastic wave model of the photothermal and photoacoustic signal

    SciTech Connect

    Meja, P.; Steiger, B.; Delsanto, P.P.

    1996-12-31

    By means of the thermo-elastic wave equation the dynamical propagation of mechanical stress and temperature can be described and applied to model the photothermal and photoacoustic signal. Analytical solutions exist only in particular cases. Using massively parallel computers it is possible to simulate the photothermal and photoacoustic signal in a most sufficient way. In this paper the method of local interaction simulation approach (LISA) is presented and selected examples of its application are given. The advantages of this method, which is particularly suitable for parallel processing, consist in reduced computation time and simple description of the photoacoustic signal in optical materials. The present contribution introduces the authors model, the formalism and some results in the 1 D case for homogeneous nonattenuative materials. The photoacoustic wave can be understood as a wave with locally limited displacement. This displacement corresponds to a temperature variation. Both variables are usually measured in photoacoustics and photothermal measurements. Therefore the temperature and displacement dependence on optical, elastic and thermal constants is analysed.

  5. Sound propagation over layered poro-elastic ground using a finite-difference model

    PubMed

    Dong; Kaynia; Madshus; Hovem

    2000-08-01

    This article presents an axisymmetric pressure-velocity finite-difference formulation (PV-FD) based on Biot's poro-elastic theory for modeling sound propagation in a homogeneous atmosphere over layered poro-elastic ground. The formulation is coded in a computer program and a simulation of actual measurements from airblast tests is carried out. The article presents typical results of simulation comprising synthetic time histories of overpressure in the atmosphere and ground vibration as well as snapshots of the response of the atmosphere-ground system at selected times. Comparisons with the measurements during airblast tests performed in Haslemoen, Norway, as well as the simulations by a frequency-wave number FFP formulation are presented to confirm the soundness of the proposed model. In particular, the generation of Mach surfaces in the ground motion, which is the result of the sound speed being greater than the Rayleigh wave velocity in the ground, is demonstrated with the help of snapshot plots. PMID:10955613

  6. Travelling wave expansion: a model fitting approach to the inverse problem of elasticity reconstruction.

    PubMed

    Baghani, Ali; Salcudean, Septimiu; Honarvar, Mohammad; Sahebjavaher, Ramin S; Rohling, Robert; Sinkus, Ralph

    2011-08-01

    In this paper, a novel approach to the problem of elasticity reconstruction is introduced. In this approach, the solution of the wave equation is expanded as a sum of waves travelling in different directions sharing a common wave number. In particular, the solutions for the scalar and vector potentials which are related to the dilatational and shear components of the displacement respectively are expanded as sums of travelling waves. This solution is then used as a model and fitted to the measured displacements. The value of the shear wave number which yields the best fit is then used to find the elasticity at each spatial point. The main advantage of this method over direct inversion methods is that, instead of taking the derivatives of noisy measurement data, the derivatives are taken on the analytical model. This improves the results of the inversion. The dilatational and shear components of the displacement can also be computed as a byproduct of the method, without taking any derivatives. Experimental results show the effectiveness of this technique in magnetic resonance elastography. Comparisons are made with other state-of-the-art techniques. PMID:21813354

  7. Measurement and mathematical modelling of elastic and resistive lung mechanical properties studied at sinusoidal expiratory flow.

    PubMed

    Bitzén, Ulrika; Niklason, Lisbet; Göransson, Ingegerd; Jonson, Björn

    2010-11-01

    Elastic pressure/volume (P(el) /V) and elastic pressure/resistance (P(el) /R) diagrams reflect parenchymal and bronchial properties, respectively. The objective was to develop a method for determination and mathematical characterization of P(el) /V and P(el) /R relationships, simultaneously studied at sinusoidal flow-modulated vital capacity expirations in a body plethysmograph. Analysis was carried out by iterative parameter estimation based on a composite mathematical model describing a three-segment P(el) /V curve and a hyperbolic P(el) /R curve. The hypothesis was tested that the sigmoid P(el) /V curve is non-symmetric. Thirty healthy subjects were studied. The hypothesis of a non-symmetric P(el) /V curve was verified. Its upper volume asymptote was nearly equal to total lung capacity (TLC), indicating lung stiffness increasing at high lung volume as the main factor limiting TLC at health. The asymptotic minimal resistance of the hyperbolic P(el) /R relationship reflected lung size. A detailed description of both P(el) /V and P(el) /R relationships was simultaneously derived from sinusoidal flow-modulated vital capacity expirations. The nature of the P(el) /V curve merits the use of a non-symmetric P(el) /V model. PMID:20726995

  8. Mathematical study of boundary-value problems within the framework of Steigmann-Ogden model of surface elasticity

    NASA Astrophysics Data System (ADS)

    Eremeyev, Victor A.; Lebedev, Leonid P.

    2016-03-01

    Mathematical questions pertaining to linear problems of equilibrium dynamics and vibrations of elastic bodies with surface stresses are studied. We extend our earlier results on existence of weak solutions within the Gurtin-Murdoch model to the Steigmann-Ogden model of surface elasticity using techniques from the theory of Sobolev's spaces and methods of functional analysis. The Steigmann-Ogden model accounts for the bending stiffness of the surface film; it is a generalization of the Gurtin-Murdoch model. Weak setups of the problems, based on variational principles formulated, are employed. Some uniqueness-existence theorems for weak solutions of static and dynamic problems are proved in energy spaces via functional analytic methods. On the boundary surface, solutions to the problems under consideration are smoother than those for the corresponding problems of classical linear elasticity and those described by the Gurtin-Murdoch model. The weak setups of eigenvalue problems for elastic bodies with surface stresses are based on the Rayleigh and Courant variational principles. For the problems based on the Steigmann-Ogden model, certain spectral properties are established. In particular, bounds are placed on the eigenfrequencies of an elastic body with surface stresses; these demonstrate the increase in the body rigidity and the eigenfrequencies compared with the situation where the surface stresses are neglected.

  9. Propulsion System Dynamic Modeling for the NASA Supersonic Concept Vehicle: AeroPropulsoServoElasticity

    NASA Technical Reports Server (NTRS)

    Kopasakis, George; Connolly, Joseph; Seidel, Jonathan

    2014-01-01

    A summary of the propulsion system modeling under NASA's High Speed Project (HSP) AeroPropulsoServoElasticity (APSE) task is provided with a focus on the propulsion system for the low-boom supersonic configuration developed by Lockheed Martin and referred to as the N+2 configuration. This summary includes details on the effort to date to develop computational models for the various propulsion system components. The objective of this paper is to summarize the model development effort in this task, while providing more detail in the modeling areas that have not been previously published. The purpose of the propulsion system modeling and the overall APSE effort is to develop an integrated dynamic vehicle model to conduct appropriate unsteady analysis of supersonic vehicle performance. This integrated APSE system model concept includes the propulsion system model, and the vehicle structural-aerodynamics model. The development to date of such a preliminary integrated model will also be summarized in this report.propulsion system dynamics, the structural dynamics, and aerodynamics.

  10. A poroelastic model coupled to a fluid network with applications in lung modelling.

    PubMed

    Berger, Lorenz; Bordas, Rafel; Burrowes, Kelly; Grau, Vicente; Tavener, Simon; Kay, David

    2016-01-01

    We develop a lung ventilation model based on a continuum poroelastic representation of lung parenchyma that is strongly coupled to a pipe network representation of the airway tree. The continuous system of equations is discretized using a low-order stabilised finite element method. The framework is applied to a realistic lung anatomical model derived from computed tomography data and an artificially generated airway tree to model the conducting airway region. Numerical simulations produce physiologically realistic solutions and demonstrate the effect of airway constriction and reduced tissue elasticity on ventilation, tissue stress and alveolar pressure distribution. The key advantage of the model is the ability to provide insight into the mutual dependence between ventilation and deformation. This is essential when studying lung diseases, such as chronic obstructive pulmonary disease and pulmonary fibrosis. Thus the model can be used to form a better understanding of integrated lung mechanics in both the healthy and diseased states. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26100614

  11. Modeling Injection Induced Seismicity with Poro-Elasticity and Time-Dependent Earthquake Nucleation

    NASA Astrophysics Data System (ADS)

    Lu, S.; Segall, P.

    2014-12-01

    The standard approach to modeling injection-induced seismicity (IIS) considers Coulomb failure stress changes accounting only for pore-pressure changes, which are solved by the diffusion equation. However, this "diffusion" triggering mechanism is not comprehensive. Lab experiments indicate earthquake nucleation also depends on stress history. Here we add two effects in modeling IIS: 1) poro-elastic coupling between solid stresses and pore-pressure, and 2) time dependent earthquake nucleation under applied stresses. In this model, we compute stress and pore-pressure changes due to a point source injecting in a homogeneous, poro-elastic full space (Rudnicki, 1986). The Coulomb stress history is used to compute seismicity rate changes based on the time-dependent nucleation model of Dieterich (1994). Our new model reveals: 1) poro-elastic coupling breaks the radial symmetry in seismicity, 2) nucleation introduces a characteristic nucleation time ta, which affects the temporal evolution of seismicity rates, and 3) for some fault geometries, the seismicity rate may increase following shut in. For constant injection flux, the log of seismicity rate scales with the change in Coulomb stress at short time, consistent with diffusion profiles. At longer time, the model predicts seismicity rates decaying with time, consistent with some observations. The contour shape and decay time are characterized by ta. For finite injection with box-car flux history, seismicity rates plummet near the injector, but may continue for some time at greater distance. Depending on fault orientations, seismicity rates may increase after shut-in due to coupling effects. It has been observed in some cases that the maximum magnitude of induced quakes occurs after shut-in. This may be understood by the fact that the volume of perturbed crust increases with injection time, which influences probability of triggering an event of a given magnitude. Whether coupling effects are important in post shut

  12. Fully-elastic multi-granular network with space/frequency/time switching using multi-core fibres and programmable optical nodes.

    PubMed

    Amaya, N; Irfan, M; Zervas, G; Nejabati, R; Simeonidou, D; Sakaguchi, J; Klaus, W; Puttnam, B J; Miyazawa, T; Awaji, Y; Wada, N; Henning, I

    2013-04-01

    We present the first elastic, space division multiplexing, and multi-granular network based on two 7-core MCF links and four programmable optical nodes able to switch traffic utilising the space, frequency and time dimensions with over 6000-fold bandwidth granularity. Results show good end-to-end performance on all channels with power penalties between 0.75 dB and 3.7 dB. PMID:23571976

  13. Model-driven SOA for sensor networks

    NASA Astrophysics Data System (ADS)

    Ibbotson, John; Gibson, Christopher; Geyik, Sahin; Szymanski, Boleslaw K.; Mott, David; Braines, David; Klapiscak, Tom; Bergamaschi, Flavio

    2011-06-01

    Our previous work has explored the application of enterprise middleware techniques at the edge of the network to address the challenges of delivering complex sensor network solutions over heterogeneous communications infrastructures. In this paper, we develop this approach further into a practicable, semantically rich, model-based design and analysis approach that considers the sensor network and its contained services as a service-oriented architecture. The proposed model enables a systematic approach to service composition, analysis (using domain-specific techniques), and deployment. It also enables cross intelligence domain integration to simplify intelligence gathering, allowing users to express queries in structured natural language (Controlled English).

  14. Computational Modeling of Mammalian Signaling Networks

    PubMed Central

    Hughey, Jacob J; Lee, Timothy K; Covert, Markus W

    2011-01-01

    One of the most exciting developments in signal transduction research has been the proliferation of studies in which a biological discovery was initiated by computational modeling. Here we review the major efforts that enable such studies. First, we describe the experimental technologies that are generally used to identify the molecular components and interactions in, and dynamic behavior exhibited by, a network of interest. Next, we review the mathematical approaches that are used to model signaling network behavior. Finally, we focus on three specific instances of “model-driven discovery”: cases in which computational modeling of a signaling network has led to new insights which have been verified experimentally. Signal transduction networks are the bridge between the extraordinarily complex extracellular environment and a carefully orchestrated cellular response. These networks are largely composed of proteins which can interact, move to specific cellular locations, or be modified or degraded. The integration of these events often leads to the activation or inactivation of transcription factors, which then induce or repress the expression of thousands of genes. Because of this critical role in translating environmental cues to cellular behaviors, malfunctioning signaling networks can lead to a variety of pathologies. One example is cancer, in which many of the key genes found to be involved in cancer onset and development are components of signaling pathways [1, 2]. A detailed understanding of the cellular signaling networks underlying such diseases would likely be extremely useful in developing new treatments. However, the complexity of signaling networks is such that their integrated functions cannot be determined without computational simulation. In recent years, mathematical modeling of signal transduction has led to some exciting new findings and biological discoveries. Here, we review the work that has enabled computational modeling of mammalian

  15. Network Reconstruction Using Nonparametric Additive ODE Models

    PubMed Central

    Henderson, James; Michailidis, George

    2014-01-01

    Network representations of biological systems are widespread and reconstructing unknown networks from data is a focal problem for computational biologists. For example, the series of biochemical reactions in a metabolic pathway can be represented as a network, with nodes corresponding to metabolites and edges linking reactants to products. In a different context, regulatory relationships among genes are commonly represented as directed networks with edges pointing from influential genes to their targets. Reconstructing such networks from data is a challenging problem receiving much attention in the literature. There is a particular need for approaches tailored to time-series data and not reliant on direct intervention experiments, as the former are often more readily available. In this paper, we introduce an approach to reconstructing directed networks based on dynamic systems models. Our approach generalizes commonly used ODE models based on linear or nonlinear dynamics by extending the functional class for the functions involved from parametric to nonparametric models. Concomitantly we limit the complexity by imposing an additive structure on the estimated slope functions. Thus the submodel associated with each node is a sum of univariate functions. These univariate component functions form the basis for a novel coupling metric that we define in order to quantify the strength of proposed relationships and hence rank potential edges. We show the utility of the method by reconstructing networks using simulated data from computational models for the glycolytic pathway of Lactocaccus Lactis and a gene network regulating the pluripotency of mouse embryonic stem cells. For purposes of comparison, we also assess reconstruction performance using gene networks from the DREAM challenges. We compare our method to those that similarly rely on dynamic systems models and use the results to attempt to disentangle the distinct roles of linearity, sparsity, and derivative

  16. A simple model for studying interacting networks

    NASA Astrophysics Data System (ADS)

    Liu, Wenjia; Jolad, Shivakumar; Schmittmann, Beate; Zia, R. K. P.

    2011-03-01

    Many specific physical networks (e.g., internet, power grid, interstates), have been characterized in considerable detail, but in isolation from each other. Yet, each of these networks supports the functions of the others, and so far, little is known about how their interactions affect their structure and functionality. To address this issue, we consider two coupled model networks. Each network is relatively simple, with a fixed set of nodes, but dynamically generated set of links which has a preferred degree, κ . In the stationary state, the degree distribution has exponential tails (far from κ), an attribute which we can explain. Next, we consider two such networks with different κ 's, reminiscent of two social groups, e.g., extroverts and introverts. Finally, we let these networks interact by establishing a controllable fraction of cross links. The resulting distribution of links, both within and across the two model networks, is investigated and discussed, along with some potential consequences for real networks. Supported in part by NSF-DMR-0705152 and 1005417.

  17. Automated modelling of signal transduction networks

    PubMed Central

    2002-01-01

    Background Intracellular signal transduction is achieved by networks of proteins and small molecules that transmit information from the cell surface to the nucleus, where they ultimately effect transcriptional changes. Understanding the mechanisms cells use to accomplish this important process requires a detailed molecular description of the networks involved. Results We have developed a computational approach for generating static models of signal transduction networks which utilizes protein-interaction maps generated from large-scale two-hybrid screens and expression profiles from DNA microarrays. Networks are determined entirely by integrating protein-protein interaction data with microarray expression data, without prior knowledge of any pathway intermediates. In effect, this is equivalent to extracting subnetworks of the protein interaction dataset whose members have the most correlated expression profiles. Conclusion We show that our technique accurately reconstructs MAP Kinase signaling networks in Saccharomyces cerevisiae. This approach should enhance our ability to model signaling networks and to discover new components of known networks. More generally, it provides a method for synthesizing molecular data, either individual transcript abundance measurements or pairwise protein interactions, into higher level structures, such as pathways and networks. PMID:12413400

  18. An affine continuum mechanical model for cross-linked F-actin networks with compliant linker proteins.

    PubMed

    Holzapfel, Gerhard A; Unterberger, Michael J; Ogden, Ray W

    2014-10-01

    Cross-linked actin networks are important building blocks of the cytoskeleton. In order to gain deeper insight into the interpretation of experimental data on actin networks, adequate models are required. In this paper we introduce an affine constitutive network model for cross-linked F-actin networks based on nonlinear continuum mechanics, and specialize it in order to reproduce the experimental behavior of in vitro reconstituted model networks. The model is based on the elastic properties of single filaments embedded in an isotropic matrix such that the overall properties of the composite are described by a free-energy function. In particular, we are able to obtain the experimentally determined shear and normal stress responses of cross-linked actin networks typically observed in rheometer tests. In the present study an extensive analysis is performed by applying the proposed model network to a simple shear deformation. The single filament model is then extended by incorporating the compliance of cross-linker proteins and further extended by including viscoelasticity. All that is needed for the finite element implementation is the constitutive model for the filaments, the linkers and the matrix, and the associated elasticity tensor in either the Lagrangian or Eulerian formulation. The model facilitates parameter studies of experimental setups such as micropipette aspiration experiments and we present such studies to illustrate the efficacy of this modeling approach. PMID:25043658

  19. Modeling of the Effective Elastic and Thermal Properties of Glass-Ceramic Solid Oxide Fuel Cell Seal Materials

    SciTech Connect

    Milhans, Jacqueline; Ahzi, Said; Garmestani, Hamid; Khaleel, Mohammad A.; Sun, Xin; Koeppel, Brian J.

    2009-05-01

    In this study, the effective elastic properties and coefficients of thermal expansion (CTE) of a glass-ceramic were predicted using homogenization techniques. Using G18, a glass-ceramic solid oxide fuel cell (SOFC) sealant as an initial reference material, the effectiveness of different homogenization models was investigated for a two-phase glass-ceramic. The elastic properties and CTEs of the G18 amorphous phase are currently unknown. Thus, estimated values were used as an input to the models. The predictive model offers accurate macroscopic values on both the elastic modulus and the CTE of glass-ceramic materials, providing the estimated amorphous values are reasonable. This model can be used in designing glass-ceramic SOFC seal materials for its specific operation conditions.

  20. Continuum modeling of forces in growing viscoelastic cytoskeletal networks.

    PubMed

    Kim, Jin Seob; Sun, Sean X

    2009-02-21

    Mechanical properties of the living cell are important in cell movement, cell division, cancer development and cell signaling. There is considerable interest in measuring local mechanical properties of living materials and the living cytoskeleton using micromechanical techniques. However, living materials are constantly undergoing internal dynamics such as growth and remodeling. A modeling framework that combines mechanical deformations with cytoskeletal growth dynamics is necessary to describe cellular shape changes. The present paper develops a general finite deformation modeling approach that can treat the viscoelastic cytoskeleton. Given the growth dynamics in the cytoskeletal network and the relationship between deformation and stress, the shape of the network is computed in an incremental fashion. The growth dynamics of the cytoskeleton can be modeled as stress dependent. The result is a consistent treatment of overall cell deformation. The framework is applied to a growing 1-d bundle of actin filaments against an elastic cantilever, and a 2-d cell undergoing wave-like protrusion dynamics. In the latter example, mechanical forces on the cell adhesion are examined as a function of the protrusion dynamics. PMID:19041329

  1. Continuum Modeling of Forces in Growing Viscoelastic Cytoskeletal Networks

    PubMed Central

    Kim, Jin Seob; Sun, Sean X.

    2013-01-01

    Mechanical properties of the living cell are important in cell movement, cell division, cancer development and cell signaling. There is considerable interest in measuring local mechanical properties of living materials and the living cytoskeleton using micromechanical techniques. However, living materials are constantly undergoing internal dynamics such as growth and remodeling. A modeling framework that combines mechanical deformations with cytoskeletal growth dynamics is necessary to describe cellular shape changes. The present paper develops a general finite deformation modeling approach that can treat the viscoelastic cytoskeleton. Given the growth dynamics in the cytoskeletal network and the relationship between deformation and stress, the shape of the network is computed in an incremental fashion. The growth dynamics of the cytoskeleton can be modeled as stress dependent. The result is a consistent treatment of overall cell deformation. The framework is applied to a growing 1-d bundle of actin filaments against an elastic cantilever, and a 2-d cell undergoing wave-like protrusion dynamics. In the latter example, mechanical forces on the cell adhesion are examined as a function the protrusion dynamics. PMID:19041329

  2. Differential effective medium modeling of rock elastic moduli with critical porosity constraints

    SciTech Connect

    Mukerji, T.; Mavko, G.; Berryman, J.; Berge, P.

    1995-03-01

    Rocks generally have a percolation porosity at which they lose rigidity and fall apart. Percolation behaviour is a purely geometrical property, independent of any physical properties, and is a powerful constraint on any valid velocity-porosity relation. The authors show how the conventional Differential Effective Medium (DEM) theory can be modified to incorporate percolation of elastic moduli in rocks by taking the material at the critical porosity as one of the constituents of a two-phase composite. Any desired percolation porosity can be specified as an input. In contrast, the conventional DEM model always predicts percolation at a porosity of either 0 or 100 percent. Most sedimentary rocks however have intermediate percolation porosities and are therefore not well represented by the conventional theory. The modified DEM model incorporates percolation behavior, and at the same time is always consistent with the Hashin-Shtrikman bounds. The predictions compare favorably with laboratory sandstone data. 24 refs., 3 figs.

  3. Elastic-plastic cube model for ultrasonic friction reduction via Poisson's effect.

    PubMed

    Dong, Sheng; Dapino, Marcelo J

    2014-01-01

    Ultrasonic friction reduction has been studied experimentally and theoretically. This paper presents a new elastic-plastic cube model which can be applied to various ultrasonic lubrication cases. A cube is used to represent all the contacting asperities of two surfaces. Friction force is considered as the product of the tangential contact stiffness and the deformation of the cube. Ultrasonic vibrations are projected onto three orthogonal directions, separately changing contact parameters and deformations. Hence, the overall change of friction forces. Experiments are conducted to examine ultrasonic friction reduction using different materials under normal loads that vary from 40 N to 240 N. Ultrasonic vibrations are generated both in longitudinal and vertical (out-of-plane) directions by way of the Poisson effect. The tests show up to 60% friction reduction; model simulations describe the trends observed experimentally. PMID:23850422

  4. Modeling the effective elastic behavior of a transversely cracked laminated composite

    SciTech Connect

    Thomas, D.J.; Wetherhold, R.C.

    1998-01-01

    The solution for the stress state present in the vicinity of transverse matrix cracks within a composite laminate is typically obtained by assuming a regular crack spacing geometry for the problem and applying a shear-lag analysis. In order to explore the validity of this underlying assumption, the probability density function for the location of the next transverse matrix crack within a crack bounded region is examined. The regular crack spacing assumption is shown to be reasonable from an engineering point of view. Continuing with this assumption, a generalized shear-lag model for multilayer, off-axis laminates subjected to full in-plane loads is developed. This model is used to quantitatively evaluate the effective elastic properties of the damaged material. The results are applicable to materials such as ceramic matrix or polymer matrix unidirectional fiber systems where damage in the form of transverse matrix cracks arises.

  5. Quantum Multimode Model of Elastic Scattering from Bose-Einstein Condensates

    SciTech Connect

    Zin, P.; Chwedenczuk, J.; Trippenbach, M.; Veitia, A.; Rzazewski, K.

    2005-05-27

    Mean field approximation treats only coherent aspects of the evolution of a Bose-Einstein condensate. However, in many experiments some atoms scatter out of the condensate. We study a semianalytic model of two counterpropagating atomic Gaussian wave packets incorporating the dynamics of incoherent scattering processes. Within the model we can treat processes of the elastic collision of atoms into the initially empty modes, and observe how, with growing occupation, the bosonic enhancement is slowly kicking in. A condition for the bosonic enhancement effect is found in terms of relevant parameters. Scattered atoms form a squeezed state. Not only are we able to calculate the dynamics of mode occupation, but also the full statistics of scattered atoms.

  6. A permeability model for coal and other fractured, sorptive-elastic media

    SciTech Connect

    Robertson, E.P.; Christiansen, R.L.

    2008-09-15

    This paper describes the derivation of a new equation that can be used to model the permeability behavior of a fractured, sorptive-elastic medium, such as coal, under variable stress conditions. The equation is applicable to confinement pressure schemes commonly used during the collection of permeability data in the laboratory. The model is derived for cubic geometry under biaxial or hydrostatic confining pressures. The model is designed to handle changes in permeability caused by adsorption and desorption of gases onto and from the matrix blocks in fractured media. The model equations can be used to calculate permeability changes caused by the production of methane (CH{sub 4}) from coal as well as the injection of gases, such as carbon dioxide, for sequestration in coal. Sensitivity analysis of the model found that each of the input variables can have a significant impact on the outcome of the permeability forecast as a function of changing pore pressure, thus, accurate input data are essential. The permeability model also can be used as a tool to determine input parameters for field simulations by curve fitting laboratory-generated permeability data. The new model is compared to two other widely used coal-permeability models using a hypothetical coal with average properties.

  7. A Permeability Model for Coal and Other Fractured, Sorptive-Elastic Media

    SciTech Connect

    Eric P. Robertson; Richard L. Christiansen

    2006-10-01

    This paper describes the derivation of a new equation that can be used to model the permeability behavior of a fractured, sorptive-elastic media, such as coal, under variable stress conditions commonly used during measurement of permeability data in the laboratory. The model is derived for cubic geometry under biaxial or hydrostatic confining pressures. The model is also designed to handle changes in permeability caused by adsorption and desorption of gases from the matrix blocks. The model equations can be used to calculate permeability changes caused by the production of methane from coal as well as the injection of gases, such as carbon dioxide, for sequestration in coal. Sensitivity analysis of the model found that each of the input variables can have a significant impact on the outcome of the permeability forecast as a function of changing pore pressure; thus, accurate input data are essential. The permeability model can also be used as a tool to determine input parameters for field simulations by curve-fitting laboratory-generated permeability data. The new model is compared to two other widely used coal permeability models using a hypothetical coal with average properties.

  8. Simplified treatment of exact resonance elastic scattering model in deterministic slowing down equation

    SciTech Connect

    Ono, M.; Wada, K.; Kitada, T.

    2012-07-01

    Simplified treatment of resonance elastic scattering model considering thermal motion of heavy nuclides and the energy dependence of the resonance cross section was implemented into NJOY [1]. In order to solve deterministic slowing down equation considering the effect of up-scattering without iterative calculations, scattering kernel for heavy nuclides is pre-calculated by the formula derived by Ouisloumen and Sanchez [2], and neutron spectrum in up-scattering term is expressed by NR approximation. To check the verification of the simplified treatment, the treatment is applied to U-238 for the energy range from 4 eV to 200 eV. Calculated multi-group capture cross section of U-238 is greater than that of conventional method and the increase of the capture cross sections is remarkable as the temperature becomes high. Therefore Doppler coefficient calculated in UO{sub 2} fuel pin is calculated more negative value than that on conventional method. The impact on Doppler coefficient is equivalent to the results of exact treatment of resonance elastic scattering reported in previous studies [2-7]. The agreement supports the validation of the simplified treatment and therefore this treatment is applied for other heavy nuclide to evaluate the Doppler coefficient in MOX fuel. The result shows that the impact of considering thermal agitation in resonance scattering in Doppler coefficient comes mainly from U-238 and that of other heavy nuclides such as Pu-239, 240 etc. is not comparable in MOX fuel. (authors)

  9. Biomechanics of Atherosclerotic Coronary Plaque: Site, Stability and In Vivo Elasticity Modeling

    PubMed Central

    Ohayon, Jacques; Finet, Gérard; Le Floc’h, Simon; Cloutier, Guy; Gharib, Ahmed M.; Heroux, Julie; Pettigrew, Roderic I.

    2016-01-01

    Coronary atheroma develop in local sites that are widely variable among patients and are considerably variable in their vulnerability for rupture. This article summarizes studies conducted by our collaborative laboratories on predictive biomechanical modeling of coronary plaques. It aims to give insights into the role of biomechanics in the development and localization of atherosclerosis, the morphologic features that determine vulnerable plaque stability, and emerging in vivo imaging techniques that may detect and characterize vulnerable plaque. Composite biomechanical and hemodynamic factors that influence the actual site of development of plaques have been studied. Plaque vulnerability, in vivo, is more challenging to assess. Important steps have been made in defining the biomechanical factors that are predictive of plaque rupture and the likelihood of this occurring if characteristic features are known. A critical key in defining plaque vulnerability is the accurate quantification of both the morphology and the mechanical properties of the diseased arteries. Recently, an early IVUS based palpography technique developed to assess local strain, elasticity and mechanical instabilities has been successfully revisited and improved to account for complex plaque geometries. This is based on an initial best estimation of the plaque components’ contours, allowing subsequent iteration for elastic modulus assessment as a basis for plaque stability determination. The improved method has also been preliminarily evaluated in patients with successful histologic correlation. Further clinical evaluation and refinement are on the horizon. PMID:24043605

  10. Incorporating elastic and plastic work rates into energy balance for long-term tectonic modeling

    NASA Astrophysics Data System (ADS)

    Ahamed, M. S.; Choi, E.

    2014-12-01

    Deformation-related energy budget is usually considered in the simplest form or even completely omitted from the energy balance equation. We derive an energy balance equation that accounts not only for heat energy but also for elastic and plastic work. Such a general description of the energy balance principle will be useful for modeling complicated interactions between geodynamic processes such as thermoelastisity, thermoplasticity and mechanical consequences of metamorphism. Following the theory of large deformation plasticity, we start from the assumption that Gibbs free energy (g) is a function of temperature (T), the second Piola-Kirchhoff stress (S), density (ρ) and internal variables (qj, j=1…n). In this formulation, new terms are derived, which are related to the energy dissipated through plastic work and the elastically stored energy that are not seen in the usual form of the energy balance equation used in geodynamics. We then simplify the generic equation to one involving more familiar quantities such as Cauchy stress and material density assuming that the small deformation formulation holds for our applications. The simplified evolution equation for temperature is implemented in DyanEarthSol3D, an unstructured finite element solver for long-term tectonic deformation. We calculate each of the newly derived terms separately in simple settings and compare the numerical results with a corresponding analytic solution. We also present the effects of the new energy balance on the evolution of a large offset normal fault.

  11. Test of 600 and 750 MeV NN matrix on elastic scattering Glauber model calculations

    NASA Astrophysics Data System (ADS)

    Brissaud, I.

    1980-09-01

    The 600 and 750 MeV proton nucleus elastic scattering cross section and polarization calculations have been performed in the framework of the Glauber model to test the pp and pn scattering amplitudes deduced from a phase shift analysis by Bystricky, Lechanoine and Lehar. It is well known that up to now we do not possess a non-phenomenological NN scattering matrix at intermediate energies. However proton-nucleus scattering analyses are used to extract information about short range correlations1), Δ resonance2) or pion condensation presences)... etc. Most scattering calculations made at these energies have been done with phenomenological NN amplitudes having a gaussian q-dependence 10050_2005_Article_BF01438168_TeX2GIFE1.gif A(q) = {kσ }/{4π }(α + i) e^{ - β ^2 q^2 /2} and 10050_2005_Article_BF01438168_TeX2GIFE2.gif C(q) = {kσ }/{4π }iq(α + i) D_e - β ^2 q^2 /2 K and σ being respectively the projectile momentum and the total pN total cross section. The parameters α, β and D are badly known and are adjusted by fitting some specific reactions as p+4He elastic scattering4). Even when these amplitudes provide good fits to the data, our understanding of the dynamics of the scattering remains obscure.

  12. Elastic thickness of the lithosphere and tectonic evolution: implications for GIA models

    NASA Astrophysics Data System (ADS)

    Amantov, Aleksey; Fjeldskaar, Willy

    2015-04-01

    Rheological properties used in GIA models require independent verifications and possible modifications. To estimate the flexural rigidity of the lithosphere in simple platform areas we use peneplain distortion, which enable us to compute isostatic response from sediment load and compare the results with observed changes in geometry. This was done for several different platform regions: - Baltic (Fennoscandian) Shield, including structural elements of the Russian Platform - Barents Sea platform areas - Kara and Western Siberian domain - Eastern Siberian Platform In the East European and East Siberian old cratons we modeled isostatic distortion of Neoproterozoic Ediacaran peneplain and some other relevant surfaces. For the Arctic we used Mid-Late Jurassic surface (JP) as a distinct unconformity and well-traced (by seismic and well data) surface in the Arctic region. The isostatic distortion of peneplains under sediment load / erosion for the old Archean - Proterozoic cratons in general confirms earlier rheology model with the flexural rigidity of the lithosphere around 5x10**23 Nm (effective elastic thickness of 30-40 km), but could be slightly lower in the Barents basins. Deviations are generally relatively small and could be explained by e.g. by averaging over fault-zones, tectonic events, compaction structures and density variations. However, the situation for the Kara-Western Siberian domain is very different, with large deviations between observations and calculations. With a slight reduction of the effective elastic thickness in the Kara Sea to 10-20 km the fit is much better. Based on the results we suggest two different major types of lithosphere rigidity in the area. This seems reasonable because they typify domains with different crustal age. Western Siberian platform, with Kara continuation has much younger basement, in addition to significant magmatic activity and Early Mesosoic extension. The lithosphere rigidity is a function of age and temperature; as

  13. Modeling Emergence in Neuroprotective Regulatory Networks

    SciTech Connect

    Sanfilippo, Antonio P.; Haack, Jereme N.; McDermott, Jason E.; Stevens, S.L.; Stenzel-Poore, Mary

    2013-01-05

    The use of predictive modeling in the analysis of gene expression data can greatly accelerate the pace of scientific discovery in biomedical research by enabling in silico experimentation to test disease triggers and potential drug therapies. Techniques that focus on modeling emergence, such as agent-based modeling and multi-agent simulations, are of particular interest as they support the discovery of pathways that may have never been observed in the past. Thus far, these techniques have been primarily applied at the multi-cellular level, or have focused on signaling and metabolic networks. We present an approach where emergence modeling is extended to regulatory networks and demonstrate its application to the discovery of neuroprotective pathways. An initial evaluation of the approach indicates that emergence modeling provides novel insights for the analysis of regulatory networks that can advance the discovery of acute treatments for stroke and other diseases.

  14. International migration network: Topology and modeling

    NASA Astrophysics Data System (ADS)

    Fagiolo, Giorgio; Mastrorillo, Marina

    2013-07-01

    This paper studies international migration from a complex-network perspective. We define the international migration network (IMN) as the weighted-directed graph where nodes are world countries and links account for the stock of migrants originated in a given country and living in another country at a given point in time. We characterize the binary and weighted architecture of the network and its evolution over time in the period 1960-2000. We find that the IMN is organized around a modular structure with a small-world binary pattern displaying disassortativity and high clustering, with power-law distributed weighted-network statistics. We also show that a parsimonious gravity model of migration can account for most of observed IMN topological structure. Overall, our results suggest that socioeconomic, geographical, and political factors are more important than local-network properties in shaping the structure of the IMN.

  15. Linking the pressure dependency of elastic and electrical properties of porous rocks by a dual porosity model

    NASA Astrophysics Data System (ADS)

    Han, Tongcheng; Gurevich, Boris; Pervukhina, Marina; Clennell, Michael Ben; Zhang, Junfang

    2016-04-01

    Knowledge about the pressure dependency of elastic and electrical properties is important for a variety of geophysical applications. We present a technique to invert for the stiff and compliant porosity from velocity measurements made as a function of differential pressure on saturated sandstones. A dual porosity concept is used for dry rock compressibility and a squirt model is employed for the pressure and frequency dependent elastic properties of the rocks when saturated. The total porosity obtained from inversion shows satisfactory agreement with experimental results. The electrical cementation factor was determined using the inverted porosity in combination with measured electrical conductivity. It was found that cementation factor increased exponentially with increasing differential pressure during isostatic loading. Elastic compressibility, electrical cementation factor and electrical conductivity of the saturated rocks correlate linearly with compliant porosity, and electrical cementation factor and electrical conductivity exhibit linear correlations with elastic compressibility of the saturated rocks under loading. The results show that the dual porosity concept is sufficient to explain the pressure dependency of elastic, electrical and joint elastic-electrical properties of saturated porous sandstones.

  16. Predictors of the nicotine reinforcement threshold, compensation, and elasticity of demand in a rodent model of nicotine reduction policy*

    PubMed Central

    Grebenstein, Patricia E.; Burroughs, Danielle; Roiko, Samuel A.; Pentel, Paul R.; LeSage, Mark G.

    2015-01-01

    Background The FDA is considering reducing the nicotine content in tobacco products as a population-based strategy to reduce tobacco addiction. Research is needed to determine the threshold level of nicotine needed to maintain smoking and the extent of compensatory smoking that could occur during nicotine reduction. Sources of variability in these measures across sub-populations also need to be identified so that policies can take into account the risks and benefits of nicotine reduction in vulnerable populations. Methods The present study examined these issues in a rodent nicotine self- administration model of nicotine reduction policy to characterize individual differences in nicotine reinforcement thresholds, degree of compensation, and elasticity of demand during progressive reduction of the unit nicotine dose. The ability of individual differences in baseline nicotine intake and nicotine pharmacokinetics to predict responses to dose reduction was also examined. Results Considerable variability in the reinforcement threshold, compensation, and elasticity of demand was evident. High baseline nicotine intake was not correlated with the reinforcement threshold, but predicted less compensation and less elastic demand. Higher nicotine clearance predicted low reinforcement thresholds, greater compensation, and less elastic demand. Less elastic demand also predicted lower reinforcement thresholds. Conclusions These findings suggest that baseline nicotine intake, nicotine clearance, and the essential value of nicotine (i.e. elasticity of demand) moderate the effects of progressive nicotine reduction in rats and warrant further study in humans. They also suggest that smokers with fast nicotine metabolism may be more vulnerable to the risks of nicotine reduction. PMID:25891231

  17. A mineralogical model for density and elasticity of the Earth's mantle

    NASA Astrophysics Data System (ADS)

    Piazzoni, A. S.; Steinle-Neumann, G.; Bunge, H.-P.; Dolejš, D.

    2007-11-01

    We present a thermodynamic model of high-pressure mineralogy that allows the evaluation of phase stability and physical properties for the Earth's mantle. The thermodynamic model is built from previous assessments and experiments in the five-component CFMAS system (CaO-FeO-MgO-Al2O3-SiO2), including mineral phases that occur close to typical chemical models of the mantle and reasonable mantle temperatures. In this system we have performed a system Gibbs free energy minimization, including pure end-member phases and a nonideal formulation for solid solutions. Solid solutions were subdivided into discrete pseudocompounds and treated as stoichiometric phases during computation of chemical equilibrium by the simplex method. We have complemented the thermodynamic model with a model of shear wave properties to obtain a full description of aggregate elastic properties (density, bulk, and shear moduli) that provide a useful basis for the consideration of seismic and geodynamic models of the Earth's mantle. The thermodynamic model described here is made available for research and training purposes through a Web interface (http://www.earthmodel.org). We examine its validity in light of experiments from mineral physics and briefly discuss inferences for mantle structure.

  18. A nested grid, nonhydrostatic, elastic model using a terrain-following coordinate transformation - The radiative-nesting boundary conditions

    NASA Technical Reports Server (NTRS)

    Chen, Chaing

    1991-01-01

    This study presents a nested-grid nonhydrostatic and elastic model using a terrain-following coordinate transformation as well as a unique application of grid-nesting techniques to the time-splitting elastic model. A simulation of the 10-m-high Witch of Agnesi Mountain provides the control to test this new model. The results show that the model produces the same solution as that derived from a simple linear analytic model. It is demonstrated that the new nested-grid model improves model resolution without resorting to the costly method of placing a fine-resolution grid over the entire domain. Since the wave reflection from the boundaries of the fine-grid model is well controlled, the boundary of the nested fine-grid model can be located even at the wave-active region. The model can be used to simulate various weather systems in which scale interactions are important.

  19. Surrogate modeling of deformable joint contact using artificial neural networks.

    PubMed

    Eskinazi, Ilan; Fregly, Benjamin J

    2015-09-01

    Deformable joint contact models can be used to estimate loading conditions for cartilage-cartilage, implant-implant, human-orthotic, and foot-ground interactions. However, contact evaluations are often so expensive computationally that they can be prohibitive for simulations or optimizations requiring thousands or even millions of contact evaluations. To overcome this limitation, we developed a novel surrogate contact modeling method based on artificial neural networks (ANNs). The method uses special sampling techniques to gather input-output data points from an original (slow) contact model in multiple domains of input space, where each domain represents a different physical situation likely to be encountered. For each contact force and torque output by the original contact model, a multi-layer feed-forward ANN is defined, trained, and incorporated into a surrogate contact model. As an evaluation problem, we created an ANN-based surrogate contact model of an artificial tibiofemoral joint using over 75,000 evaluations of a fine-grid elastic foundation (EF) contact model. The surrogate contact model computed contact forces and torques about 1000 times faster than a less accurate coarse grid EF contact model. Furthermore, the surrogate contact model was seven times more accurate than the coarse grid EF contact model within the input domain of a walking motion. For larger input domains, the surrogate contact model showed the expected trend of increasing error with increasing domain size. In addition, the surrogate contact model was able to identify out-of-contact situations with high accuracy. Computational contact models created using our proposed ANN approach may remove an important computational bottleneck from musculoskeletal simulations or optimizations incorporating deformable joint contact models. PMID:26220591

  20. Modeling of urban traffic networks with lattice Boltzmann model

    NASA Astrophysics Data System (ADS)

    Meng, Jian-ping; Qian, Yue-hong; Dai, Shi-qiang

    2008-02-01

    It is of great importance to uncover the characteristics of traffic networks. However, there have been few researches concerning kinetics models for urban traffic networks. In this work, a lattice Boltzmann model (LBM) for urban traffic networks is proposed by incorporating the ideas of the Biham-Middleton-Levine (BML) model into the LBM for road traffic. In the present model, situations at intersections with the red and green traffic signals are treated as a kind of boundary conditions varying with time. Thus, the urban traffic network could be described in the mesoscopic level. By performing numerical simulations under the periodic boundary conditions, the behavior of average velocity is investigated in detail. The numerical results agree quite well with those given by the Chowdhury-Schadschneider (ChSch) model (Chowdhury D. and Schadschneider A., Phys. Rev. E, 59 (1999) R1311). Furthermore, the statistical noise is reduced in this discrete kinetics model, thus, the present model has considerably high computational efficiency.

  1. Super-Grid Modeling of the Elastic Wave Equation in Semi-Bounded Domains

    SciTech Connect

    Petersson, N. Anders; Sjögreen, Björn

    2014-10-01

    Abstract

    We develop a super-grid modeling technique for solving the elastic wave equation in semi-bounded two- and three-dimensional spatial domains. In this method, waves are slowed down and dissipated in sponge layers near the far-field boundaries. Mathematically, this is equivalent to a coordinate mapping that transforms a very large physical domain to a significantly smaller computational domain, where the elastic wave equation is solved numerically on a regular grid. To damp out waves that become poorly resolved because of the coordinate mapping, a high order artificial dissipation operator is added in layers near the boundaries of the computational domain. We prove by energy estimates that the super-grid modeling leads to a stable numerical method with decreasing energy, which is valid for heterogeneous material properties and a free surface boundary condition on one side of the domain. Our spatial discretization is based on a fourth order accurate finite difference method, which satisfies the principle of summation by parts. We show that the discrete energy estimate holds also when a centered finite difference stencil is combined with homogeneous Dirichlet conditions at several ghost points outside of the far-field boundaries. Therefore, the coefficients in the finite difference stencils need only be boundary modified near the free surface. This allows for improved computational efficiency and significant simplifications of the implementation of the proposed method in multi-dimensional domains. Numerical experiments in three space dimensions show that the modeling error from truncating the domain can be made very small by choosing a sufficiently wide super-grid damping layer. The numerical accuracy is first evaluated against analytical solutions of Lamb’s problem, where fourth order accuracy is observed with a sixth order artificial dissipation. We then use successive grid refinements to study the numerical accuracy in the more

  2. A plane stress finite element model for elastic-plastic mode I/II crack growth

    NASA Astrophysics Data System (ADS)

    James, Mark Anthony

    A finite element program has been developed to perform quasi-static, elastic-plastic crack growth simulations. The model provides a general framework for mixed-mode I/II elastic-plastic fracture analysis using small strain assumptions and plane stress, plane strain, and axisymmetric finite elements. Cracks are modeled explicitly in the mesh. As the cracks propagate, automatic remeshing algorithms delete the mesh local to the crack tip, extend the crack, and build a new mesh around the new tip. State variable mapping algorithms transfer stresses and displacements from the old mesh to the new mesh. The von Mises material model is implemented in the context of a non-linear Newton solution scheme. The fracture criterion is the critical crack tip opening displacement, and crack direction is predicted by the maximum tensile stress criterion at the crack tip. The implementation can accommodate multiple curving and interacting cracks. An additional fracture algorithm based on nodal release can be used to simulate fracture along a horizontal plane of symmetry. A core of plane strain elements can be used with the nodal release algorithm to simulate the triaxial state of stress near the crack tip. Verification and validation studies compare analysis results with experimental data and published three-dimensional analysis results. Fracture predictions using nodal release for compact tension, middle-crack tension, and multi-site damage test specimens produced accurate results for residual strength and link-up loads. Curving crack predictions using remeshing/mapping were compared with experimental data for an Arcan mixed-mode specimen. Loading angles from 0 degrees to 90 degrees were analyzed. The maximum tensile stress criterion was able to predict the crack direction and path for all loading angles in which the material failed in tension. Residual strength was also accurately predicted for these cases.

  3. The International Trade Network: weighted network analysis and modelling

    NASA Astrophysics Data System (ADS)

    Bhattacharya, K.; Mukherjee, G.; Saramäki, J.; Kaski, K.; Manna, S. S.

    2008-02-01

    Tools of the theory of critical phenomena, namely the scaling analysis and universality, are argued to be applicable to large complex web-like network structures. Using a detailed analysis of the real data of the International Trade Network we argue that the scaled link weight distribution has an approximate log-normal distribution which remains robust over a period of 53 years. Another universal feature is observed in the power-law growth of the trade strength with gross domestic product, the exponent being similar for all countries. Using the 'rich-club' coefficient measure of the weighted networks it has been shown that the size of the rich-club controlling half of the world's trade is actually shrinking. While the gravity law is known to describe well the social interactions in the static networks of population migration, international trade, etc, here for the first time we studied a non-conservative dynamical model based on the gravity law which excellently reproduced many empirical features of the ITN.

  4. Deep space network software cost estimation model

    NASA Technical Reports Server (NTRS)

    Tausworthe, R. C.

    1981-01-01

    A parametric software cost estimation model prepared for Jet PRopulsion Laboratory (JPL) Deep Space Network (DSN) Data System implementation tasks is described. The resource estimation mdel modifies and combines a number of existing models. The model calibrates the task magnitude and difficulty, development environment, and software technology effects through prompted responses to a set of approximately 50 questions. Parameters in the model are adjusted to fit JPL software life-cycle statistics.

  5. Matrix Pseudospectral Method for (Visco)Elastic Tides Modeling of Planetary Bodies

    NASA Astrophysics Data System (ADS)

    Zabranova, Eliska; Hanyk, Ladidslav; Matyska, Ctirad

    2010-05-01

    We deal with the equations and boundary conditions describing deformation and gravitational potential of prestressed spherically symmetric elastic bodies by decomposing governing equations into a series of boundary value problems (BVP) for ordinary differential equations (ODE) of the second order. In contrast to traditional Runge-Kutta integration techniques, highly accurate pseudospectral schemes are employed to directly discretize the BVP on Chebyshev grids and a set of linear algebraic equations with an almost block diagonal matrix is derived. As a consequence of keeping the governing ODEs of the second order instead of the usual first-order equations, the resulting algebraic system is half-sized but derivatives of the model parameters are required. Moreover, they can be easily evaluated for models, where structural parametres are piecewise polynomially dependent. Both accuracy and efficiency of the method are tested by evaluating the tidal Love numbers for the Earth's model PREM. Finally, we also derive complex Love numbers for models with the Maxwell viscoelastic rheology, where viscosity is a depth-dependent function. The method is applied to evaluation of the tidal Love numbers for models of Mars and Venus. The Love numbers of the two Martian models - the former optimized to cosmochemical data and the latter to the moment of inertia (Sohl and Spohn, 1997) - are h2=0.172 (0.212) and k2=0.093 (0.113). For Venus, the value of k2=0.295 (Konopliv and Yoder, 1996), obtained from the gravity-field analysis, is consistent with the results for our model with the liquid-core radius of 3110 km (Zábranová et al., 2009). Together with rapid evaluation of free oscillation periods by an analogous method, this combined matrix approach could by employed as an efficient numerical tool in structural studies of planetary bodies. REFERENCES Konopliv, A. S. and Yoder, C. F., 1996. Venusian k2 tidal Love number from Magellan and PVO tracking data, Geophys. Res. Lett., 23, 1857

  6. Elastic Model Transitions: a Hybrid Approach Utilizing Quadratic Inequality Constrained Least Squares (LSQI) and Direct Shape Mapping (DSM)

    NASA Technical Reports Server (NTRS)

    Jurenko, Robert J.; Bush, T. Jason; Ottander, John A.

    2014-01-01

    A method for transitioning linear time invariant (LTI) models in time varying simulation is proposed that utilizes both quadratically constrained least squares (LSQI) and Direct Shape Mapping (DSM) algorithms to determine physical displacements. This approach is applicable to the simulation of the elastic behavior of launch vehicles and other structures that utilize multiple LTI finite element model (FEM) derived mode sets that are propagated throughout time. The time invariant nature of the elastic data for discrete segments of the launch vehicle trajectory presents a problem of how to properly transition between models while preserving motion across the transition. In addition, energy may vary between flex models when using a truncated mode set. The LSQI-DSM algorithm can accommodate significant changes in energy between FEM models and carries elastic motion across FEM model transitions. Compared with previous approaches, the LSQI-DSM algorithm shows improvements ranging from a significant reduction to a complete removal of transients across FEM model transitions as well as maintaining elastic motion from the prior state.

  7. Elastic properties of an intact and ACL-ruptured knee joint: measurement, mathematical modelling, and haptic rendering.

    PubMed

    Frey, Martin; Riener, Robert; Michas, Christian; Regenfelder, Felix; Burgkart, Rainer

    2006-01-01

    An analytical, dynamic model of the human knee joint has been developed to simulate the unloaded knee joint behaviour in 6 degrees of freedom. It is based on extensive robot-based measurements of the elastic properties of a human cadaver knee joint. The measured data are compared with data from the literature to ensure that a proper database for modelling is used. The analytical modelling of the passive elastic joint properties is done with Local Linear Model Trees. The deduced knee joint model incorporates passive elastic properties of the internal knee joint structures, passive elastic muscle forces, damping forces, gravitational forces, and external forces. There are two sets of parameters, one simulating the movement of the intact knee joint, and a second simulating the knee joint with ruptured anterior cruciate ligament. The dynamic model can be easily processed in real-time. It is implemented in the haptic display of the Munich Knee Joint Simulator (MKS), which enables a person to move a plastic leg driven by a robot manipulator and feel the simulated knee joint force. Orthopaedic physicians judged the performance of the dynamic knee joint model by executing physical knee joint tests at the MKS. PMID:16039659

  8. Dual modeling of political opinion networks

    NASA Astrophysics Data System (ADS)

    Wang, R.; A. Wang, Q.

    2011-09-01

    We present the result of a dual modeling of opinion networks. The model complements the agent-based opinion models by attaching to the social agent (voters) network a political opinion (party) network having its own intrinsic mechanisms of evolution. These two subnetworks form a global network, which can be either isolated from, or dependent on, the external influence. Basically, the evolution of the agent network includes link adding and deleting, with the opinion changes influenced by social validation, the political climate, the attractivity of the parties, and the interaction between them. The opinion network is initially composed of numerous nodes representing opinions or parties that are located on a one dimensional axis according to their political positions. The mechanism of evolution includes union, splitting, change of position, and attractivity, taking into account the pairwise node interaction decaying with node distance in power law. The global evolution ends in a stable distribution of the social agents over a quasistable and fluctuating stationary number of remaining parties. Empirical study on the lifetime distribution of numerous parties and vote results is carried out to verify numerical results.

  9. Nonconsensus opinion model on directed networks

    NASA Astrophysics Data System (ADS)

    Qu, Bo; Li, Qian; Havlin, Shlomo; Stanley, H. Eugene; Wang, Huijuan

    2014-11-01

    Dynamic social opinion models have been widely studied on undirected networks, and most of them are based on spin interaction models that produce a consensus. In reality, however, many networks such as Twitter and the World Wide Web are directed and are composed of both unidirectional and bidirectional links. Moreover, from choosing a coffee brand to deciding who to vote for in an election, two or more competing opinions often coexist. In response to this ubiquity of directed networks and the coexistence of two or more opinions in decision-making situations, we study a nonconsensus opinion model introduced by Shao et al. [Phys. Rev. Lett. 103, 018701 (2009), 10.1103/PhysRevLett.103.018701] on directed networks. We define directionality ξ as the percentage of unidirectional links in a network, and we use the linear correlation coefficient ρ between the in-degree and out-degree of a node to quantify the relation between the in-degree and out-degree. We introduce two degree-preserving rewiring approaches which allow us to construct directed networks that can have a broad range of possible combinations of directionality ξ and linear correlation coefficient ρ and to study how ξ and ρ impact opinion competitions. We find that, as the directionality ξ or the in-degree and out-degree correlation ρ increases, the majority opinion becomes more dominant and the minority opinion's ability to survive is lowered.

  10. On a Model-Independent Representation for the Real Part of the Elastic Hadron Amplitude

    SciTech Connect

    Fagundes, D. A.; Menon, M. J.

    2010-11-12

    The applicability of Martin's Real Part Formula in model-independent analysis of elastic proton-proton scattering is discussed. Good reproduction of all the differential cross section data at high-energies (19.4-62.5 GeV) is obtained through an empirical parametrization for the imaginary part of the amplitude and the use of a representation for the Martin's formula without the scaling property. According to the fit results, the scattering amplitude is predominantly imaginary, except at the dip region. One zero (change of sign) is observed in the imaginary part of the amplitude (dip region) and two zeros in the real part (at small and intermediate values of the momentum transfer).

  11. Non-Reflecting Regions for Finite Difference Methods in Modeling of Elastic Wave Propagation in Plates

    NASA Technical Reports Server (NTRS)

    Kishoni, Doron; Taasan, Shlomo

    1994-01-01

    Solution of the wave equation using techniques such as finite difference or finite element methods can model elastic wave propagation in solids. This requires mapping the physical geometry into a computational domain whose size is governed by the size of the physical domain of interest and by the required resolution. This computational domain, in turn, dictates the computer memory requirements as well as the calculation time. Quite often, the physical region of interest is only a part of the whole physical body, and does not necessarily include all the physical boundaries. Reduction of the calculation domain requires positioning an artificial boundary or region where a physical boundary does not exist. It is important however that such a boundary, or region, will not affect the internal domain, i.e., it should not cause reflections that propagate back into the material. This paper concentrates on the issue of constructing such a boundary region.

  12. Delay and Disruption Tolerant Networking MACHETE Model

    NASA Technical Reports Server (NTRS)

    Segui, John S.; Jennings, Esther H.; Gao, Jay L.

    2011-01-01

    To verify satisfaction of communication requirements imposed by unique missions, as early as 2000, the Communications Networking Group at the Jet Propulsion Laboratory (JPL) saw the need for an environment to support interplanetary communication protocol design, validation, and characterization. JPL's Multi-mission Advanced Communications Hybrid Environment for Test and Evaluation (MACHETE), described in Simulator of Space Communication Networks (NPO-41373) NASA Tech Briefs, Vol. 29, No. 8 (August 2005), p. 44, combines various commercial, non-commercial, and in-house custom tools for simulation and performance analysis of space networks. The MACHETE environment supports orbital analysis, link budget analysis, communications network simulations, and hardware-in-the-loop testing. As NASA is expanding its Space Communications and Navigation (SCaN) capabilities to support planned and future missions, building infrastructure to maintain services and developing enabling technologies, an important and broader role is seen for MACHETE in design-phase evaluation of future SCaN architectures. To support evaluation of the developing Delay Tolerant Networking (DTN) field and its applicability for space networks, JPL developed MACHETE models for DTN Bundle Protocol (BP) and Licklider/Long-haul Transmission Protocol (LTP). DTN is an Internet Research Task Force (IRTF) architecture providing communication in and/or through highly stressed networking environments such as space exploration and battlefield networks. Stressed networking environments include those with intermittent (predictable and unknown) connectivity, large and/or variable delays, and high bit error rates. To provide its services over existing domain specific protocols, the DTN protocols reside at the application layer of the TCP/IP stack, forming a store-and-forward overlay network. The key capabilities of the Bundle Protocol include custody-based reliability, the ability to cope with intermittent connectivity

  13. Wireless Networking for Control: Technologies and Models

    NASA Astrophysics Data System (ADS)

    Johansson, Mikael; Jäntti, Riku

    This chapter discusses technologies and models for low power wireless industrial communication. The aim of the text is to narrow the gap between the models used in the theoretical control literature with models that arise when tools from communication theory are used to model emerging standards for industrial wireless. The chapter provides a tutorial overview covering basic concepts and models for wireless propagation, medium access control, multi-hop networking, routing and transport protocols. Throughout, an effort is made to describe both key technologies and associated models of control-relevant characteristics such as latency and loss. Some existing and emerging specifications and standards, including Zigbee, WirelessHART and ISA100, are described in some detail, and links are made between the developed models and useful network abstractions for control design.

  14. A comprehensive Network Security Risk Model for process control networks.

    PubMed

    Henry, Matthew H; Haimes, Yacov Y

    2009-02-01

    The risk of cyber attacks on process control networks (PCN) is receiving significant attention due to the potentially catastrophic extent to which PCN failures can damage the infrastructures and commodity flows that they support. Risk management addresses the coupled problems of (1) reducing the likelihood that cyber attacks would succeed in disrupting PCN operation and (2) reducing the severity of consequences in the event of PCN failure or manipulation. The Network Security Risk Model (NSRM) developed in this article provides a means of evaluating the efficacy of candidate risk management policies by modeling the baseline risk and assessing expectations of risk after the implementation of candidate measures. Where existing risk models fall short of providing adequate insight into the efficacy of candidate risk management policies due to shortcomings in their structure or formulation, the NSRM provides model structure and an associated modeling methodology that captures the relevant dynamics of cyber attacks on PCN for risk analysis. This article develops the NSRM in detail in the context of an illustrative example. PMID:19000078

  15. Applications of elastic-viscoplastic constitutive models in dynamic analyses of crack run-arrest events

    SciTech Connect

    Bass, B.R.; Pugh, C.E.; Swindeman, R.W.

    1986-01-01

    Various viscoplastic constitutive models and several nonlinear fracture criteria are being installed in the ADINA general purpose finite element computer program, and the combined predictive capabilities are being evaluated through applications to the HSST wide-plate experiments. The first two constitutive models selected for installation in ADINA were a variation of the Perzyna elastic-viscoplastic model with linear strain hardening and the Bodner-Partom viscoplastic model with strain hardening. Other models being examined include those due to Robinson-Pugh and Hart. The fracture criteria being examined for use with nonlinear analyses include several path-independent integrals that were formulated to remove limitations on the original J-integral of Rice. Some of these integrals represent slight modifications of the J-integral, while others have a different theoretical basis. This paper describes applications of these nonlinear techniques to the first series of six HSST wide-plate crack-arrest tests that have been performed. These experiments include crack initiations at low temperatures and relatively long (20 cm) cleavage propagation phases which are terminated by arrest in high-temperature regions. Crack arrests are then followed by ductile tearing events. Consequently, the crack-front regions in these tests are exposed to wide ranges of strain rates and temperatures.

  16. Multiscale modeling of the effect of the interfacial transition zone on the modulus of elasticity of fiber-reinforced fine concrete

    NASA Astrophysics Data System (ADS)

    Zhang, J. L.; Liu, X.; Yuan, Y.; Mang, H. A.

    2015-01-01

    A multiscale model of fiber-reinforced fine concrete is developed, with special emphasis on the interfacial transition zone (ITZ). It does not only allow the prediction of the modulus of elasticity but also permits the determination of the strain and stress field. The model is based on the mathematical homogenization method and implemented in the frame of the finite element method. A comparison of model predictions with experimental results taken from the literature validates the model's effectiveness for prediction of the elasticity modulus. The effect of the thickness and of the elasticity modulus of the ITZ on the elasticity modulus of the homogenized material as well as the influence of the strength of the ITZ on the elastic limit of the homogenized material, are investigated numerically. Furthermore, a sensitivity analysis is carried out to evaluate the influence of fine-scale factors on the elasticity modulus of ultra-high performance concrete.

  17. Viscoelastic Model for Lung Parenchyma for Multi-Scale Modeling of Respiratory System Phase I: Hypo-Elastic Model for CFD Implementation

    SciTech Connect

    Freed, Alan D.; Einstein, Daniel R.

    2011-04-14

    An isotropic constitutive model for the parenchyma of lung has been derived from the theory of hypo-elasticity. The intent is to use it to represent the mechanical response of this soft tissue in sophisticated, computational, fluid-dynamic models of the lung. This demands that the continuum model be accurate, yet simple and effcient. An objective algorithm for its numeric integration is provided. The response of the model is determined for several boundary-value problems whose experiments are used for material characterization. The effective elastic, bulk, and shear moduli, and Poisson’s ratio, as tangent functions, are also derived. The model is characterized against published experimental data for lung. A bridge between this continuum model and a dodecahedral model of alveolar geometry is investigated, with preliminary findings being reported.

  18. Cross-Sectional Elasticity Imaging of Arterial Wall by Comparing Measured Change in Thickness with Model Waveform

    NASA Astrophysics Data System (ADS)

    Tang, Jiang; Hasegawa, Hideyuki; Kanai, Hiroshi

    2005-06-01

    For the assessment of the elasticity of the arterial wall, we have developed the phased tracking method [H. Kanai et al.: IEEE Trans. Ultrason. Ferroelectr. Freq. Control 43 (1996) 791] for measuring the minute change in thickness due to heartbeats and the elasticity of the arterial wall with transcutaneous ultrasound. For various reasons, for example, an extremely small deformation of the wall, the minute change in wall thickness during one heartbeat is largely influenced by noise in these cases and the reliability of the elasticity distribution obtained from the maximum change in thickness deteriorates because the maximum value estimation is largely influenced by noise. To obtain a more reliable cross-sectional image of the elasticity of the arterial wall, in this paper, a matching method is proposed to evaluate the waveform of the measured change in wall thickness by comparing the measured waveform with a template waveform. The maximum deformation, which is used in the calculation of elasticity, was determined from the amplitude of the matched model waveform to reduce the influence of noise. The matched model waveform was obtained by minimizing the difference between the measured and template waveforms. Furthermore, a random error, which was obtained from the reproducibility among the heartbeats of the measured waveform, was considered useful for the evaluation of the reliability of the measured waveform.

  19. Cellular automata modelling of biomolecular networks dynamics.

    PubMed

    Bonchev, D; Thomas, S; Apte, A; Kier, L B

    2010-01-01

    The modelling of biological systems dynamics is traditionally performed by ordinary differential equations (ODEs). When dealing with intracellular networks of genes, proteins and metabolites, however, this approach is hindered by network complexity and the lack of experimental kinetic parameters. This opened the field for other modelling techniques, such as cellular automata (CA) and agent-based modelling (ABM). This article reviews this emerging field of studies on network dynamics in molecular biology. The basics of the CA technique are discussed along with an extensive list of related software and websites. The application of CA to networks of biochemical reactions is exemplified in detail by the case studies of the mitogen-activated protein kinase (MAPK) signalling pathway, the FAS-ligand (FASL)-induced and Bcl-2-related apoptosis. The potential of the CA method to model basic pathways patterns, to identify ways to control pathway dynamics and to help in generating strategies to fight with cancer is demonstrated. The different line of CA applications presented includes the search for the best-performing network motifs, an analysis of importance for effective intracellular signalling and pathway cross-talk. PMID:20373215

  20. An integrated network model of psychotic symptoms.

    PubMed

    Looijestijn, Jasper; Blom, Jan Dirk; Aleman, André; Hoek, Hans W; Goekoop, Rutger

    2015-12-01

    The full body of research on the nature of psychosis and its determinants indicates that a considerable number of factors are relevant to the development of hallucinations, delusions, and other positive symptoms, ranging from neurodevelopmental parameters and altered connectivity of brain regions to impaired cognitive functioning and social factors. We aimed to integrate these factors in a single mathematical model based on network theory. At the microscopic level this model explains positive symptoms of psychosis in terms of experiential equivalents of robust, high-frequency attractor states of neural networks. At the mesoscopic level it explains them in relation to global brain states, and at the macroscopic level in relation to social-network structures and dynamics. Due to the scale-free nature of biological networks, all three levels are governed by the same general laws, thereby allowing for an integrated model of biological, psychological, and social phenomena involved in the mediation of positive symptoms of psychosis. This integrated network model of psychotic symptoms (INMOPS) is described together with various possibilities for application in clinical practice. PMID:26432501

  1. Neural network modeling of associative memory: Beyond the Hopfield model

    NASA Astrophysics Data System (ADS)

    Dasgupta, Chandan

    1992-07-01

    A number of neural network models, in which fixed-point and limit-cycle attractors of the underlying dynamics are used to store and associatively recall information, are described. In the first class of models, a hierarchical structure is used to store an exponentially large number of strongly correlated memories. The second class of models uses limit cycles to store and retrieve individual memories. A neurobiologically plausible network that generates low-amplitude periodic variations of activity, similar to the oscillations observed in electroencephalographic recordings, is also described. Results obtained from analytic and numerical studies of the properties of these networks are discussed.

  2. Bayesian network modelling of upper gastrointestinal bleeding

    NASA Astrophysics Data System (ADS)

    Aisha, Nazziwa; Shohaimi, Shamarina; Adam, Mohd Bakri

    2013-09-01

    Bayesian networks are graphical probabilistic models that represent causal and other relationships between domain variables. In the context of medical decision making, these models have been explored to help in medical diagnosis and prognosis. In this paper, we discuss the Bayesian network formalism in building medical support systems and we learn a tree augmented naive Bayes Network (TAN) from gastrointestinal bleeding data. The accuracy of the TAN in classifying the source of gastrointestinal bleeding into upper or lower source is obtained. The TAN achieves a high classification accuracy of 86% and an area under curve of 92%. A sensitivity analysis of the model shows relatively high levels of entropy reduction for color of the stool, history of gastrointestinal bleeding, consistency and the ratio of blood urea nitrogen to creatinine. The TAN facilitates the identification of the source of GIB and requires further validation.

  3. A new paradigm for the molecular basis of rubber elasticity

    SciTech Connect

    Hanson, David E.; Barber, John L.

    2015-02-19

    The molecular basis for rubber elasticity is arguably the oldest and one of the most important questions in the field of polymer physics. The theoretical investigation of rubber elasticity began in earnest almost a century ago with the development of analytic thermodynamic models, based on simple, highly-symmetric configurations of so-called Gaussian chains, i.e. polymer chains that obey Markov statistics. Numerous theories have been proposed over the past 90 years based on the ansatz that the elastic force for individual network chains arises from the entropy change associated with the distribution of end-to-end distances of a free polymer chain. There are serious philosophical objections to this assumption and others, such as the assumption that all network nodes undergo affine motion and that all of the network chains have the same length. Recently, a new paradigm for elasticity in rubber networks has been proposed that is based on mechanisms that originate at the molecular level. Using conventional statistical mechanics analyses, quantum chemistry, and molecular dynamics simulations, the fundamental entropic and enthalpic chain extension forces for polyisoprene (natural rubber) have been determined, along with estimates for the basic force constants. Concurrently, the complex morphology of natural rubber networks (the joint probability density distributions that relate the chain end-to-end distance to its contour length) has also been captured in a numerical model. When molecular chain forces are merged with the network structure in this model, it is possible to study the mechanical response to tensile and compressive strains of a representative volume element of a polymer network. As strain is imposed on a network, pathways of connected taut chains, that completely span the network along strain axis, emerge. Although these chains represent only a few percent of the total, they account for nearly all of the elastic stress at high strain. Here we provide a brief

  4. Features and heterogeneities in growing network models

    NASA Astrophysics Data System (ADS)

    Ferretti, Luca; Cortelezzi, Michele; Yang, Bin; Marmorini, Giacomo; Bianconi, Ginestra

    2012-06-01

    Many complex networks from the World Wide Web to biological networks grow taking into account the heterogeneous features of the nodes. The feature of a node might be a discrete quantity such as a classification of a URL document such as personal page, thematic website, news, blog, search engine, social network, etc., or the classification of a gene in a functional module. Moreover the feature of a node can be a continuous variable such as the position of a node in the embedding space. In order to account for these properties, in this paper we provide a generalization of growing network models with preferential attachment that includes the effect of heterogeneous features of the nodes. The main effect of heterogeneity is the emergence of an “effective fitness” for each class of nodes, determining the rate at which nodes acquire new links. The degree distribution exhibits a multiscaling behavior analogous to the the fitness model. This property is robust with respect to variations in the model, as long as links are assigned through effective preferential attachment. Beyond the degree distribution, in this paper we give a full characterization of the other relevant properties of the model. We evaluate the clustering coefficient and show that it disappears for large network size, a property shared with the Barabási-Albert model. Negative degree correlations are also present in this class of models, along with nontrivial mixing patterns among features. We therefore conclude that both small clustering coefficients and disassortative mixing are outcomes of the preferential attachment mechanism in general growing networks.

  5. Phase-Field Modeling of Elasticity, Plasticity, and Phase Segregation in Binary Heteroepitaxial Film Growth

    NASA Astrophysics Data System (ADS)

    Berry, Joel; Elder, Ken; Provatas, Nikolas

    2004-03-01

    A continuum phase field model, adapted from the Phase Field Crystals (PFC) model [1], is applied to the study of strained binary heteroepitaxial systems, with emphasis given to the investigation of 2-D species segregation during liquid phase film growth. In addition to (1) phase segregation, it is shown that this model is capable of incorporating (2) surface morphological evolution and (3) defect nucleation and propagation, as well as the interactions of these three phenomena, over all primary epitaxial growth regimes. Additional highlights of the model include consideration of composition-dependent elastic moduli, differing species mobilities, and mass transport within the bulk film. The spatial nature of the phase segregation and its interaction with film surface morphology and defect nucleation are investigated as functions of various material and process parameters. In particular, the interaction between film surface morphology and compositional segregation is investigated, with attention given to its influence on the asymmetry observed in critical thickness between compressive and tensile strains. [1] K.R. Elder, M. Katakowski, M. Haataja, and M. Grant, Physical Review Letters 88, 245701 (2002).

  6. Physical Modeling of Microtubules Network

    NASA Astrophysics Data System (ADS)

    Allain, Pierre; Kervrann, Charles

    2014-10-01

    Microtubules (MT) are highly dynamic tubulin polymers that are involved in many cellular processes such as mitosis, intracellular cell organization and vesicular transport. Nevertheless, the modeling of cytoskeleton and MT dynamics based on physical properties is difficult to achieve. Using the Euler-Bernoulli beam theory, we propose to model the rigidity of microtubules on a physical basis using forces, mass and acceleration. In addition, we link microtubules growth and shrinkage to the presence of molecules (e.g. GTP-tubulin) in the cytosol. The overall model enables linking cytosol to microtubules dynamics in a constant state space thus allowing usage of data assimilation techniques.

  7. Deep space network software cost estimation model

    NASA Technical Reports Server (NTRS)

    Tausworthe, R. C.

    1981-01-01

    A parametric software cost estimation model prepared for Deep Space Network (DSN) Data Systems implementation tasks is presented. The resource estimation model incorporates principles and data from a number of existing models. The model calibrates task magnitude and difficulty, development environment, and software technology effects through prompted responses to a set of approximately 50 questions. Parameters in the model are adjusted to fit DSN software life cycle statistics. The estimation model output scales a standard DSN Work Breakdown Structure skeleton, which is then input into a PERT/CPM system, producing a detailed schedule and resource budget for the project being planned.

  8. Artificial neural network cardiopulmonary modeling and diagnosis

    DOEpatents

    Kangas, Lars J.; Keller, Paul E.

    1997-01-01

    The present invention is a method of diagnosing a cardiopulmonary condition in an individual by comparing data from a progressive multi-stage test for the individual to a non-linear multi-variate model, preferably a recurrent artificial neural network having sensor fusion. The present invention relies on a cardiovascular model developed from physiological measurements of an individual. Any differences between the modeled parameters and the parameters of an individual at a given time are used for diagnosis.

  9. Artificial neural network cardiopulmonary modeling and diagnosis

    DOEpatents

    Kangas, L.J.; Keller, P.E.

    1997-10-28

    The present invention is a method of diagnosing a cardiopulmonary condition in an individual by comparing data from a progressive multi-stage test for the individual to a non-linear multi-variate model, preferably a recurrent artificial neural network having sensor fusion. The present invention relies on a cardiovascular model developed from physiological measurements of an individual. Any differences between the modeled parameters and the parameters of an individual at a given time are used for diagnosis. 12 figs.

  10. Stochastic cellular automata model of neural networks.

    PubMed

    Goltsev, A V; de Abreu, F V; Dorogovtsev, S N; Mendes, J F F

    2010-06-01

    We propose a stochastic dynamical model of noisy neural networks with complex architectures and discuss activation of neural networks by a stimulus, pacemakers, and spontaneous activity. This model has a complex phase diagram with self-organized active neural states, hybrid phase transitions, and a rich array of behaviors. We show that if spontaneous activity (noise) reaches a threshold level then global neural oscillations emerge. Stochastic resonance is a precursor of this dynamical phase transition. These oscillations are an intrinsic property of even small groups of 50 neurons. PMID:20866454

  11. CIP-MOC Modeling of Seismic Wave Propagation in Elastic Media

    NASA Astrophysics Data System (ADS)

    Yoshimi, M.

    2004-12-01

    In many fields such as hydrodynamics and MHD, the CIP method, an upwind difference hyperbolic equation solver, has widely been employed for advection calculation. The CIP scheme was constructed considering that an advected property and its spatial derivative follow same advection equation. This effects low numerical dispersion and relaxed CFL condition in the advection calculation. In the present work, we developed a CIP-MOC (CIP with method of characteristics) scheme for seismic wave propagation in 3D elastic heterogeneous media with flat free surface. 3D elastic wave equations in velocity-stress formulation and their spatial derivatives, as well, are converted into sets of 1D advection equations and non-advection equations for each direction (x,y,z in Cartesian coodinate system) with the method of characteristics. Since the Riemann invariant of each advection equation consists of stress and velocity, updatings of velocity and stress are simultaneous and a collocated grid system is employed. A free surface is modeled as a zero-stress surface. A reflection free boundary is installed by considering no incident wave comes from outside of the boundary. A double coupled seismic point source is introduced as external point stresses. Overall scheme is made up of multiphases employing time-splitting and directional-splitting techniques. Each time step is composed of three directional updating phases each for wave propagation in x, y and z direction. Each directional updating phase is made up of advection phase and non-advection phase. In the advection phase, advection equations are solved with the CIP method. In the non-advection phases, non-advetion equations and boundary conditions are evaluated with central finite differences. We conducted CIP-MOC seismic wave propagation simulations in a half-space, layered and fully heterogeneous media for embedded point source. By comparing our products with those produced with discrete wavenumber method and finite difference method

  12. Proposed spring network cell model based on a minimum energy concept.

    PubMed

    Ujihara, Yoshihiro; Nakamura, Masanori; Miyazaki, Hiroshi; Wada, Shigeo

    2010-04-01

    We developed a mechano-cell model incorporating a cell membrane, a nuclear envelope, and actin filaments to simulate the mechanical behavior of a cell during tensile tests. The computational model depicts a cell as a combination of various spring elements in the framework of the minimum energy concept. A cell membrane and a nuclear envelope are both modeled as shells of a spring network that express elastic resistance to changes in bending, stretching, and surface area. A bundle of actin filaments is represented by a mechanical spring that generates a force as a function of its extension. The interaction between the nuclear envelope and the cell membrane is expressed by a potential energy function with respect to the distance between them. Incompressibility of a cell is assured by a volume elastic energy function. The cell shape during a tensile test is determined by a quasi-static approach, such that the total elastic energy converges to the minimum. The load-deformation curve obtained from the simulation shows a significant increase in stretching load with deformation of the cell and lies within a range of experimentally obtained load-deformation curves. The total elastic energy is dominated by the energy stored in the actin fibers. Actin fibers that are randomly oriented before loading tend to become aligned, passively, in the stretched direction. These results attribute the non-linearity in the load-deformation curve to passive reorientation of actin fibers in the stretched direction. PMID:20108165

  13. An analytical elastic plastic contact model with strain hardening and frictional effects for normal and oblique impacts

    DOE PAGESBeta

    Brake, M. R. W.

    2015-02-17

    Impact between metallic surfaces is a phenomenon that is ubiquitous in the design and analysis of mechanical systems. We found that to model this phenomenon, a new formulation for frictional elastic–plastic contact between two surfaces is developed. The formulation is developed to consider both frictional, oblique contact (of which normal, frictionless contact is a limiting case) and strain hardening effects. The constitutive model for normal contact is developed as two contiguous loading domains: the elastic regime and a transitionary region in which the plastic response of the materials develops and the elastic response abates. For unloading, the constitutive model ismore » based on an elastic process. Moreover, the normal contact model is assumed to only couple one-way with the frictional/tangential contact model, which results in the normal contact model being independent of the frictional effects. Frictional, tangential contact is modeled using a microslip model that is developed to consider the pressure distribution that develops from the elastic–plastic normal contact. This model is validated through comparisons with experimental results reported in the literature, and is demonstrated to be significantly more accurate than 10 other normal contact models and three other tangential contact models found in the literature.« less