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Sample records for ema oli ori

  1. OLI Radiometric Calibration

    NASA Technical Reports Server (NTRS)

    Markham, Brian; Morfitt, Ron; Kvaran, Geir; Biggar, Stuart; Leisso, Nathan; Czapla-Myers, Jeff

    2011-01-01

    Goals: (1) Present an overview of the pre-launch radiance, reflectance & uniformity calibration of the Operational Land Imager (OLI) (1a) Transfer to orbit/heliostat (1b) Linearity (2) Discuss on-orbit plans for radiance, reflectance and uniformity calibration of the OLI

  2. Energy Materials Coordinating Committee (EMaCC)

    SciTech Connect

    Not Available

    1991-05-31

    This report summarizes EMaCC activities for fiscal year 1990 and describes the materials research programs of various offices and divisions within the department. The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further the effective use of materials expertise within the department. (JL)

  3. Ecological Momentary Assessment (EMA) in Studies of Substance Use

    ERIC Educational Resources Information Center

    Shiffman, Saul

    2009-01-01

    Ecological momentary assessment (EMA) is particularly suitable for studying substance use, because use is episodic and thought to be related to mood and context. This article reviews EMA methods in substance use research, focusing on tobacco and alcohol use and relapse, where EMA has been most applied. Common EMA designs combine event-based…

  4. Economically motivated adulteration (EMA) of food: common characteristics of EMA incidents.

    PubMed

    Everstine, Karen; Spink, John; Kennedy, Shaun

    2013-04-01

    Economically motivated adulteration (EMA) of food, also known as food fraud, is the intentional adulteration of food for financial advantage. A common form of EMA, undeclared substitution with alternative ingredients, is usually a health concern because of allergen labeling requirements. As demonstrated by the nearly 300,000 illnesses in China from melamine adulteration of infant formula, EMA also has the potential to result in serious public health consequences. Furthermore, EMA incidents reveal gaps in quality assurance testing methodologies that could be exploited for intentional harm. In contrast to foodborne disease outbreaks, EMA incidents present a particular challenge to the food industry and regulators because they are deliberate acts that are intended to evade detection. Large-scale EMA incidents have been described in the scientific literature, but smaller incidents have been documented only in media sources. We reviewed journal articles and media reports of EMA since 1980. We identified 137 unique incidents in 11 food categories: fish and seafood (24 incidents), dairy products (15), fruit juices (12), oils and fats (12), grain products (11), honey and other natural sweeteners (10), spices and extracts (8), wine and other alcoholic beverages (7), infant formula (5), plant-based proteins (5), and other food products (28). We identified common characteristics among the incidents that may help us better evaluate and reduce the risk of EMA. These characteristics reflect the ways in which existing regulatory systems or testing methodologies were inadequate for detecting EMA and how novel detection methods and other deterrence strategies can be deployed. Prevention and detection of EMA cannot depend on traditional food safety strategies. Comprehensive food protection, as outlined by the Food Safety Modernization Act, will require innovative methods for detecting EMA and for targeting crucial resources toward the riskiest food products. PMID:23575142

  5. EMAS statement: benign accountability or wishful thinking? Insights from the Greek EMAS registry.

    PubMed

    Skouloudis, Antonis; Jones, Keith; Sfakianaki, Eleni; Lazoudi, Eugenia; Evangelinos, Konstantinos

    2013-10-15

    Do organizations certified under the Eco-Management and Audit Scheme (EMAS) effectively discharge their environmental accountability through their statements? Is the EMAS statement a step forward for the transparency of environmental management and the empowerment of organizational stakeholders' decision-making? Drawing from the Greek EMAS registry we apply an evaluation method for the completeness and materiality of environmental statements. While the latest version of the EMAS Regulation has introduced a set of forward-looking - yet challenging - improvements, the application of the standard should be closely examined. With this in mind, the key objective of this research note is to provide - from a descriptive standpoint - insights on the content of EMAS-based environmental accountability and a basis for future research as well as fruitful policy debate. PMID:23911984

  6. Polymerization characteristics of EMA-based resin.

    PubMed

    Saito, Yuji

    2004-03-01

    To explore the feasibility of a new relining material, polymerization characteristics such as peak temperature, setting time, residual monomer, and postpolymerization were examined in ethyl methacrylate (EMA) resins composed of EMA and 4 kinds of EMA/methyl methacrylate (MMA) copolymers with high and low molecular weights and initiated by benzoyl peroxide/N,N-dimethyl-p-toluidine system and compared with those of MMA/PMMA resins. Peak temperature (53.8-71.0 degrees C) and residual monomer (2.56-3.52% after 1 h and 1.57-2.31% after 24 h) of the EMA resins were significantly lower than those of the MMA resins (88.9-93.4 degrees C and 4.61-5.85% after 1 h and 4.09-4.84% after 24 h, respectively). The composition of the copolymers had a significant effect on peak temperature and setting time but no significant effect on residual monomer and postpolymerization. The molecular weight of the copolymers affected peak temperature, setting time and residual monomer significantly. This study suggested that EMA resins are worthy of further evaluation as a relining material. PMID:15164919

  7. Development of Electrochemical Supercapacitors for EMA Applications

    NASA Technical Reports Server (NTRS)

    Kosek, John A.; Dunning, Thomas; LaConti, Anthony B.

    1996-01-01

    A limitation of the typical electrochemical capacitor is the maximum available power and energy density, and an improvement in capacitance per unit weight and volume is needed. A solid-ionomer electrochemical capacitor having a unit cell capacitance greater than 2 F/sq cm and a repeating element thickness of 6 mils has been developed. This capacitor could provide high-current pulses for electromechanical actuation (EMA). Primary project objectives were to develop high-capacitance particulates, to increase capacitor gravimetric and volumetric energy densities above baseline and to fabricate a 10-V capacitor with a repeating element thickness of 6 mils or less. Specific EMA applications were identified and capacitor weight and volume projections made.

  8. Tensile deformation mechanisms of ABS/PMMA/EMA blends

    NASA Astrophysics Data System (ADS)

    Wang, S. H.; Gao, J.; Lin, S. X.; Zhang, P.; Huang, J.; Xu, L. L.

    2014-08-01

    The tensile deformation mechanisms of acrylonitrile - butadiene - styrene (ABS) / polymethyl methacrylate (PMMA) blends toughened by ethylene methacrylate (EMA) copolymer was investigated by analysing the fracture morphology. ABS/PMMA was blended with EMA copolymer by melt mixing technique using co-rotating twin extruder. Tensile tests show that the elongation at break of ABS/PMMA blends can be efficiently improved with the increase in EMA content. Fracture morphology of ABS/PMMA/EMA blends reveals that the material yield induced by hollowing-out of EMA particles and its propagation into yield zone is the main toughening mechanism. Moreover, the appearance that EMA particles in the central area are given priority to hollowing-out may be related to the skin-core structure of the injection moulded parts caused by the different cooling rate between surface and inside in the process of injection moulding.

  9. OLi3O- anion: Designing the strongest base to date using OLi3 superalkali

    NASA Astrophysics Data System (ADS)

    Srivastava, Ambrish Kumar; Misra, Neeraj

    2016-03-01

    LiO- (proton affinity = 1785 kJ/mol) is the strongest base reported in the literature, followed by CH3- (proton affinity = 1743 kJ/mol). Using ab initio and DFT calculations, we propose the design of a novel base OLi3O-, by interacting OLi3 superalkali with O atom, which is even more basic than LiO-. The proton affinity of OLi3O- isomers lies in the range 1803-1928 kJ/mol. This strongest base is kinetically and thermodynamically stable, which can be synthesized by reacting Li2O with LiO- at least in gas phase. This study may provide suitable path to the experimentalists to further explore this novel species.

  10. Energy Materials Coordinating Committee (EMaCC), Fiscal year 1990

    SciTech Connect

    None, None

    1991-05-31

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further the effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. Four topical subcommittees are established and are continuing their own programs: Structural Ceramics, Electrochemical Technologies, Radioactive Waste Containment, and Superconductivity. In addition, the EMaCC aids in obtaining materialsrelated inputs for both intra- and inter-agency compilations. Membership in the EMaCC is open to any Department organizational unit; participants are appointed by Division or Office Directors. The current active membership is listed on the following four pages. The EMaCC reports to the Director of the Office of Energy Research in his capacity as overseer of the technical programs of the Department. This annual technical report is mandated by the EMaCC terms of reference. This report summarizes EMaCC activities for FY 1990 and describes the materials research programs of various offices and divisions within the Department. The Chairman of EMaCC for FY 1990 was Scott L. Richlen; the Executive Secretary was Dr. Jerry Smith.

  11. Obstacles to transparency over pharmacovigilance data within the EMA.

    PubMed

    2015-11-01

    In July and August 2014, the European Medicines Agency (EMA) organised two public consultations concerning European pharmacovigilance. These two consultations reveal a number of EMA proposals that are counterproductive to the objective of improving transparency over pharmacovigilance data. The EMA's proposals offer pharmaceutical companies an opportunity to participate in public hearings held by the European Pharmacovigilance Risk Assessment Committee (PRAC), in order to defend their drug. They also provide for the possibility of holding non-public hearings to discuss public data. There is a great risk that the drug industry might use these provisions to influence the debate. The strings attached to the access that the EMA proposes to grant researchers to data contained in the centralised European pharmacovigilance database would allow the EMA to censor the publication of their findings. The EMA seems to regard pharmacovigilance data as commercially confidential information. Responding to these consultations provided an opportunity to remind the EMA that data about adverse effects are a public good, in the common interest, and that it is unacceptable to keep this information confidential. PMID:26688911

  12. Controller Design for EMA in TVC Incorporating Force Feedback

    NASA Technical Reports Server (NTRS)

    Schinstock, Dale E.; Scott, Douglas A.

    1998-01-01

    The objective of this research was to develop control schemes and control design procedures for electromechanical actuators (EMA) in thrust vector control (TVC) applications. For a variety of reasons, there is a tendency within the aerospace community to use electromechanical actuators in applications where hydraulics have traditionally been employed. TVC of rocket engines is one such application. However, there is considerable research, development, and testing to be done before EMA will be accepted by the community at large for these types of applications. Besides the development of design procedures for the basic position controller, two major concerns are dealt with in this research by incorporating force feedback: 1) the effects of resonance on the performance of EMA-TVC-rocket-engine systems, and 2) the effects of engine start transients on EMA. This report only highlights the major contributions of this research.

  13. The magnetic field of ζ Ori A

    NASA Astrophysics Data System (ADS)

    Blazère, A.; Neiner, C.; Bouret, J.-C.; Tkachenko, A.

    2015-01-01

    Magnetic fields play a significant role in the evolution of massive stars. About 7% of massive stars are found to be magnetic at a level detectable with current instrumentation (Wade et al. 2013) and only a few magnetic O stars are known. Detecting magnetic field in O stars is particularly challenging because they only have few, often broad, lines to measure the field, which leads to a deficit in the knowledge of the basic magnetic properties of O stars. We present new spectropolarimetric Narval observations of ζ Ori A. We also provide a new analysis of both the new and older data taking binarity into account. The aim of this study was to confirm the presence of a magnetic field in ζ Ori A. We identify that it belongs to ζ Ori Aa and characterize it.

  14. ori identity signatures: A latent profile analysis of the types of Māori identity.

    PubMed

    Greaves, Lara M; Houkamau, Carla; Sibley, Chris G

    2015-10-01

    ori are the indigenous peoples of New Zealand. However, the term 'Māori' can refer to a wide range of people of varying ethnic compositions and cultural identity. We present a statistical model identifying 6 distinct types, or 'Māori Identity Signatures,' and estimate their proportion in the Māori population. The model is tested using a Latent Profile Analysis of a national probability sample of 686 Māori drawn from the New Zealand Attitudes and Values Study. We identify 6 distinct signatures: Traditional Essentialists (22.6%), Traditional Inclusives (16%), High Moderates (31.7%), Low Moderates (18.7%), Spiritually Orientated (4.1%), and Disassociated (6.9%). These distinct Identity Signatures predicted variation in deprivation, age, mixed-ethnic affiliation, and religion. This research presents the first formal statistical model assessing how people's identity as Māori is psychologically structured, documents the relative proportion of these different patterns of structures, and shows that these patterns reliably predict differences in core demographics. We identify a range of patterns of Māori identity far more diverse than has been previously proposed based on qualitative data, and also show that the majority of Māori fit a moderate or traditional identity pattern. The application of our model for studying Māori health and identity development is discussed. PMID:25774895

  15. Influence of the micro-physical properties of the aerosol on the atmospheric correction of OLI data acquired over desert area

    NASA Astrophysics Data System (ADS)

    Manzo, Ciro; Bassani, Cristiana

    2016-04-01

    This paper focuses on the evaluation of surface reflectance obtained by different atmospheric correction algorithms of the Landsat 8 OLI data considering or not the micro-physical properties of the aerosol when images are acquired in desert area located in South-West of Nile delta. The atmospheric correction of remote sensing data was shown to be sensitive to the aerosol micro-physical properties, as reported in Bassani et al., 2012. In particular, the role of the aerosol micro-physical properties on the accuracy of the atmospheric correction of remote sensing data was investigated [Bassani et al., 2015; Tirelli et al., 2015]. In this work, the OLI surface reflectance was retrieved by the developed OLI@CRI (OLI ATmospherically Corrected Reflectance Imagery) physically-based atmospheric correction which considers the aerosol micro-physical properties available from the two AERONET stations [Holben et al., 1998] close to the study area (El_Farafra and Cairo_EMA_2). The OLI@CRI algorithm is based on 6SV radiative transfer model, last generation of the Second Simulation of a Satellite Signal in the Solar Spectrum (6S) radiative transfer code [Kotchenova et al., 2007; Vermote et al., 1997], specifically developed for Landsat 8 OLI data. The OLI reflectance obtained by the OLI@CRI was compared with reflectance obtained by other atmospheric correction algorithms which do not consider micro-physical properties of aerosol (DOS) or take on aerosol standard models (FLAASH, implemented in ENVI software). The accuracy of the surface reflectance retrieved by different algorithms were calculated by comparing the spatially resampled OLI images with the MODIS surface reflectance products. Finally, specific image processing was applied to the OLI reflectance images in order to compare remote sensing products obtained for same scene. The results highlight the influence of the physical characterization of aerosol on the OLI data improving the retrieved atmospherically corrected

  16. The continuum spectrum of V1016 Ori

    NASA Astrophysics Data System (ADS)

    Vitrichenko, E. A.

    1999-03-01

    New photoelectric JHKLM observations were obtained for the star V1016 Ori. Infrared variability of the system was detected. UBVRIJHKLM observations are used to analyze the brightness of V1016 Ori outside eclipse. Its flux is shown to consist of the following components: (1) the flux from a primary B0 V star, (2) the flux from a secondary A0 V star, (3) the flux from an infrared object (an infrared component), and (4) the flux from a dust envelope around the A0 secondary with the temperature T_d = 1600 K and the equivalent radius R_d = 30 R_solar. The magnitudes of the B0 and A0 stars corrected for interstellar reddening are V_1 = (6.03 +/- 0.05) mag and V_2 = (8.4 +/- 0.2) mag, respectively. The effective temperature and bolometric luminosity of the infrared component were estimated to be T ~ 3000 K and L_3 = 150 L_solar. The infrared component may be in the Hayashi stage.

  17. 42 CFR 93.402 - ORI allegation assessments.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... RESEARCH MISCONDUCT Responsibilities of the U.S. Department of Health and Human Services Research Misconduct Issues § 93.402 ORI allegation assessments. (a) When ORI receives an allegation of research misconduct directly or becomes aware of an allegation or apparent instance of research misconduct, it...

  18. 42 CFR 93.402 - ORI allegation assessments.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... RESEARCH MISCONDUCT Responsibilities of the U.S. Department of Health and Human Services Research Misconduct Issues § 93.402 ORI allegation assessments. (a) When ORI receives an allegation of research misconduct directly or becomes aware of an allegation or apparent instance of research misconduct, it...

  19. The Landsat Data Continuity Mission Operational Land Imager (OLI) Sensor

    NASA Technical Reports Server (NTRS)

    Markham, Brian L.; Knight, Edward J.; Canova, Brent; Donley, Eric; Kvaran, Geri; Lee, Kenton; Barsi, Julia A.; Pedelty, Jeffrey A.; Dabney, Philip W.; Irons, James R.

    2012-01-01

    The Landsat Data Continuity Mission (LDCM) is being developed by NASA and USGS and is currently planned for launch in January 2013 [1]. Once on-orbit and checked out, it will be operated by USGS and officially named Landsat-8. Two sensors will be on LDCM: the Operational Land Imager (OLI), which has been built and delivered by Ball Aerospace & Technology Corp (BATC) and the Thermal Infrared Sensor (TIRS)[2], currently being built and tested at Goddard Space Flight Center (GSFC) with a planned delivery of Winter 2012. The OLI covers the Visible, Near-IR (NIR) and Short-Wave Infrared (SWIR) parts of the spectrum; TIRS covers the Thermal Infrared (TIR). This paper discusses only the OLI instrument and its pre-launch characterization; a companion paper covers TIRS.

  20. Design of power electronics for TVC EMA systems

    NASA Astrophysics Data System (ADS)

    Nelms, R. Mark

    1993-08-01

    The Composite Development Division of the Propulsion Laboratory at Marshall Space Flight Center (MSFC) is currently developing a class of electromechanical actuators (EMA's) for use in space transportation applications such as thrust vector control (TVC) and propellant control valves (PCV). These high power servomechanisms will require rugged, reliable, and compact power electronic modules capable of modulating several hundred amperes of current at up to 270 volts. MSFC has selected the brushless dc motor for implementation in EMA's. This report presents the results of an investigation into the applicability of two new technologies, MOS-controlled thyristors (MCT's) and pulse density modulation (PDM), to the control of brushless dc motors in EMA systems. MCT's are new power semiconductor devices, which combine the high voltage and current capabilities of conventional thyristors and the low gate drive requirements of metal oxide semiconductor field effect transistors (MOSFET's). The commanded signals in a PDM system are synthesized using a series of sinusoidal pulses instead of a series of square pulses as in a pulse width modulation (PWM) system. A resonant dc link inverter is employed to generate the sinusoidal pulses in the PDM system. This inverter permits zero-voltage switching of all semiconductors which reduces switching losses and switching stresses. The objectives of this project are to develop and validate an analytical model of the MCT device when used in high power motor control applications and to design, fabricate, and test a prototype electronic circuit employing both MCT and PDM technology for controlling a brushless dc motor.

  1. Design of power electronics for TVC EMA systems

    NASA Technical Reports Server (NTRS)

    Nelms, R. Mark

    1993-01-01

    The Composite Development Division of the Propulsion Laboratory at Marshall Space Flight Center (MSFC) is currently developing a class of electromechanical actuators (EMA's) for use in space transportation applications such as thrust vector control (TVC) and propellant control valves (PCV). These high power servomechanisms will require rugged, reliable, and compact power electronic modules capable of modulating several hundred amperes of current at up to 270 volts. MSFC has selected the brushless dc motor for implementation in EMA's. This report presents the results of an investigation into the applicability of two new technologies, MOS-controlled thyristors (MCT's) and pulse density modulation (PDM), to the control of brushless dc motors in EMA systems. MCT's are new power semiconductor devices, which combine the high voltage and current capabilities of conventional thyristors and the low gate drive requirements of metal oxide semiconductor field effect transistors (MOSFET's). The commanded signals in a PDM system are synthesized using a series of sinusoidal pulses instead of a series of square pulses as in a pulse width modulation (PWM) system. A resonant dc link inverter is employed to generate the sinusoidal pulses in the PDM system. This inverter permits zero-voltage switching of all semiconductors which reduces switching losses and switching stresses. The objectives of this project are to develop and validate an analytical model of the MCT device when used in high power motor control applications and to design, fabricate, and test a prototype electronic circuit employing both MCT and PDM technology for controlling a brushless dc motor.

  2. A cohort study comparing cardiovascular risk factors in rural Māori, urban Māori and non-Māori communities in New Zealand

    PubMed Central

    Faatoese, Allamanda F; Gillies, Matea W; Robertson, Paul J; Huria, Tania M; Doughty, Rob N; Whalley, Gillian A; Richards, Mark A; Troughton, Richard W; Tikao-Mason, Karen N; Wells, Elisabeth J; Sheerin, Ian G; Pitama, Suzanne G

    2012-01-01

    Objectives To understand health disparities in cardiovascular disease (CVD) in the indigenous Māori of New Zealand, diagnosed and undiagnosed CVD risk factors were compared in rural Māori in an area remote from health services with urban Māori and non-Māori in a city well served with health services. Design Prospective cohort study. Setting Hauora Manawa is a cohort study of diagnosed and previously undiagnosed CVD, diabetes and risk factors, based on random selection from electoral rolls of the rural Wairoa District and Christchurch City, New Zealand. Participants Screening clinics were attended by 252 rural Māori, 243 urban Māori and 256 urban non-Māori, aged 20–64 years. Main outcome measures The study documented personal and family medical history, blood pressure, anthropometrics, fasting lipids, insulin, glucose, HbA1c and urate to identify risk factors in common and those that differ among the three communities. Results Mean age (SD) was 45.7 (11.5) versus 42.6 (11.2) versus 43.6 (11.5) years in rural Māori, urban Māori and non-Māori, respectively. Age-adjusted rates of diagnosed cardiac disease were not significantly different across the cohorts (7.5% vs 5.8% vs 2.8%, p=0.073). However, rural Māori had significantly higher levels of type-2 diabetes (10.7% vs 3.7% vs 2.4%, p<0.001), diagnosed hypertension (25.0% vs 14.9% vs 10.7%, p<0.001), treated dyslipidaemia (15.7% vs 7.1% vs 2.8%, p<0.001), current smoking (42.8% vs 30.5% vs 15.2%, p<0.001) and age-adjusted body mass index (30.7 (7.3) vs 29.1 (6.4) vs 26.1 (4.5) kg/m2, p<0.001). Similarly high rates of previously undocumented elevated blood pressure (22.2% vs 23.5% vs 17.6%, p=0.235) and high cholesterol (42.1% vs 54.3% vs 42.2%, p=0.008) were observed across all cohorts. Conclusions Supporting integrated rural healthcare to provide screening and management of CVD risk factors would reduce health disparities in this indigenous population. PMID:22685219

  3. TelEMA: a low-cost and user-friendly telephone assessment platform.

    PubMed

    Fernandez, Katya C; Johnson, Matthew R; Rodebaugh, Thomas L

    2013-12-01

    Ecological momentary assessment (EMA), or the repeated assessment of individuals' behaviors and experiences over time, is a methodologically advantageous approach to the study of psychological constructs. Recently, advances in computer technology have allowed for EMA research to be conducted in a more convenient, automated, and secure manner by administering surveys on participants' telephones and storing the results directly to a central server. The present article introduces TelEMA, an easy-to-use, low-cost telephone assessment platform for clinical and research applications. A single server running TelEMA can be shared among many experimenters, studies, and participants simultaneously. TelEMA routes telephone calls and text messages through a third-party service, so experimenters may conduct studies with no up-front cost or technical expertise. TelEMA provides a secure Web interface for experimenters or clinicians to design studies, enroll participants, monitor compliance, and collate response data from anywhere. Participants complete surveys using their own telephones. Surveys may contain keypress or voice recording questions, and the timing and content of each survey may be randomized and customized. A pilot study was conducted in which individuals used the TelEMA system to complete four randomly timed surveys per day for one week; the surveys assessed state affect and social anxiety. Results indicated that participants found TelEMA easy to use and secure, and compliance rates were on par with other EMA methods using mobile devices. Overall, TelEMA is a practical and robust system that enables fast and inexpensive deployment of EMAs. PMID:23239075

  4. Possible Reasons for the Slow Rotation of BF Ori

    NASA Astrophysics Data System (ADS)

    Shulman, S. G.

    2016-03-01

    Possible reasons for the very low projected rotation velocity of BF Ori compared to other UX Ori stars are discussed. The hypothesis of a close companion that slows down the star's rotation by a tidal interaction is examined. Based on a theory of synchronization and modern models of evolution, the interaction is calculated numerically for different masses of the companion and values of the semi-major axis. It is shown that in order to obtain the projected velocity observed for BF Ori, the companion must have a mass greater than 0.5M⊙ . Such a large companion should have been discovered observationally. It is suggested that the low rotation velocity of BF Ori is more likely to be related to the distribution of the angular momentum of a protostellar cloud between the angular momentum of the star and the orbital angular momentum of a low-mass companion.

  5. The OLI Radiometric Scale Realization Round Robin Measurement Campaign

    NASA Technical Reports Server (NTRS)

    Cutlip, Hansford; Cole,Jerold; Johnson, B. Carol; Maxwell, Stephen; Markham, Brian; Ong, Lawrence; Hom, Milton; Biggar, Stuart

    2011-01-01

    A round robin radiometric scale realization was performed at the Ball Aerospace Radiometric Calibration Laboratory in January/February 2011 in support of the Operational Land Imager (OLI) Program. Participants included Ball Aerospace, NIST, NASA Goddard Space Flight Center, and the University of Arizona. The eight day campaign included multiple observations of three integrating sphere sources by nine radiometers. The objective of the campaign was to validate the radiance calibration uncertainty ascribed to the integrating sphere used to calibrate the OLI instrument. The instrument level calibration source uncertainty was validated by quatnifying: (1) the long term stability of the NIST calibrated radiance artifact, (2) the responsivity scale of the Ball Aerospace transfer radiometer and (3) the operational characteristics of the large integrating sphere.

  6. Energy Materials Coordinating Committee (EMaCC), Fiscal year 1989

    SciTech Connect

    1991-03-01

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further the effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. Four topical subcommittees are established and are continuing their own programs: Structural Ceramics, Electrochemical Technologies, Radioactive Waste Containment, and Superconductivity. In addition, the EMaCC aids in obtaining materials-related inputs for both intra- and inter-agency compilations. The first part of the Program Descriptions consists of a funding summary for each Assistant Secretary office and the Office of Energy Research. This is followed by a summary of project titles and objectives, including the program/project manager(s) and principal investigator. The second part of the Program Descriptions consists of more detailed project summaries with project goals and accomplishments.

  7. Extension of EMA to address regional skew and low outliers

    USGS Publications Warehouse

    Griffis, V.W.; Stedinger, J.R.; Cohn, T.A.

    2003-01-01

    The recently developed expected moments algorithm [EMA] (Cohn et al. 1997) does as well as MLEs at estimating LP3 flood quantiles using systematic and historical information. Needed extensions include use of a regional skewness estimator and its precision to be consistent with Bulletin 17B and to make use of such hydrologic information. Another issue addressed by Bulletin 17B is the treatment of low outliers. A Monte Carlo study illustrates the performance of an extended EMA estimator compared to estimators that employ the complete data set with and without use of regional skew, conditional probability adjustment from Bulletin 17B, and an estimator that uses probability plot regression to compute substitute values for low outliers. Estimators that use a regional skew all do better than estimators that fail to use an informative regional skewness estimator. For LP3 data, the low outlier rejection procedure results in no loss of overall accuracy, and the differences between the MSEs of the estimators that used an informative regional skew were generally negligible in the skew range of real interest.

  8. Effect of EMA and antioxidants on properties of thermoplastic starch blown films

    NASA Astrophysics Data System (ADS)

    Threepopnatkul, P.; Kulsetthanchalee, C.; Sittattrakul, A.; Kaewjinda, E.

    2015-07-01

    The objectives of this study were to investigate the effect of poly(ethylene-co-methyl acrylate) (EMA) at 10, 30 and 50 wt% on the morphological properties, moisture sorption, water vapor permeability and biodegradability of thermoplastic starch (TPS). Urea and formamide were used as a mixed plasticizer. In addition, the effect of antioxidants namely, 3,5-di-tert-butyl-4-hydroxyhydrocinnamate (DTBH), butylated hydroxytoluene (BHT) and bis(octadecyl)hydroxylamine (BOH) at 1 wt% on the properties of TPS/EMA film was investigated. TPS/EMA films were produced by a blown film molding machine and characterized by scanning electron microscropy, moisture sorption, water vapor permeability and biodegradability measurement. Results found that the increment of EMA content in the TPS matrix could improve the water sorption, water vapor permeability and biodegradability properties of TPS/EMA films. For biodegradation, the weight loss of the blended films was directly proportional to TPS content. Regarding the antioxidants effect, the water vapor permeability of TPS/EMA films containing DTBH was higher than the one with BOH and BHT. However, the antioxidants contributed little to the biodegradability of TPS/EMA films and had no effect on the moisture sorption of TPS/EMA films.

  9. Clinical Assessment of Affective Instability: Comparing EMA Indices, Questionnaire Reports, and Retrospective Recall

    ERIC Educational Resources Information Center

    Solhan, Marika B.; Trull, Timothy J.; Jahng, Seungmin; Wood, Phillip K.

    2009-01-01

    Traditional self-report measures of psychopathology may be influenced by a variety of recall biases. Ecological momentary assessment (EMA) reduces these biases by assessing individuals' experiences as they occur in their natural environments. This study examines the discrepancy between trait questionnaire, retrospective report, and EMA measures of…

  10. Energy Materials Coordinating Committee (EMaCC): Fiscal year 1996. Annual technical report

    SciTech Connect

    1997-08-01

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department`s materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. The EMaCC reports to the Director of the Office of Energy Research in his or her capacity as overseer of the technical programs of the Department. This annual technical report is mandated by the EMaCC terms of reference. This report summarizes EMaCC activities for FY 1996 and describes the materials research programs of various offices and divisions within the Department.

  11. On the Engineering Mathematics Test (EMaT)

    NASA Astrophysics Data System (ADS)

    Watanabe, Toshimasa

    The aim of Engineering Mathematics Test (EMaT) is to assess university students' core academic competence and acheivement of Engineering Mathematics. It is useful for professors to evaluate teaching effect of the classes. This evaluation would help them improve curricula, and scores can be available for graduate school entrance examination. The scope includes fundamentals in Calculus, Linear Algebra, Differetial Equations, and Probability and Statistics. It is open to all students free of charge, and is annually given once at least 40 (increasing every year) universities in December. Currently, it is administered by the Engineering Mathematics Test Steering Committee, supported by the Good Practice Promotion Program for University Education of the Ministry of Education, Culture, Sports, Science and Technology.

  12. Design of power electronics for TVC and EMA systems

    NASA Astrophysics Data System (ADS)

    Nelms, R. Mark; Bell, J. Brett; Shepherd, Michael T.

    1994-11-01

    The Component Development Division of the Propulsion Laboratory at Marshall Space Flight Center (MSFC) is currently developing a class of electromechanical actuators (EMA's) for use in space transportation applications such as thrust vector control (TVC) and propellant control valves (PCV). These high power servomechanisms will require rugged, reliable, and compact power electronic modules capable of modulating several hundred amperes of current at up to 270 volts. MSFC has selected the brushless dc motor for implementation in EMA's. A previous project performed by Auburn University examined the use of the resonant dc link (RDCL) inverter, pulse density modulation (PDM), and mos-controlled thyristors (MCT's) for speed control of a brushless dc motor. The speed of the brushless dc motor is proportional to the applied stator voltage. In a PDM system, the control system determines the number of resonant voltage pulses which must be applied to the stator to achieve a desired speed. The addition of a waveshaping circuit to the front end of a standard three-phase inverter yields a RDCL inverter; the resonant voltage pulses are produced through the action of this wave shaping circuit and the inverter. This project has focused on the implementation of a system which permits zero-voltage switching with the bus voltage clamped at the input voltage level. In the same manner as the RDCL inverter, the inverter selected for this implementation is a combination of waveshaping circuit and a standard three-phase inverter. In addition, this inverter allows a pulse-width modulated (PWM)-like control scheme instead of a PDM scheme. The operation of waveshaping circuit will be described through analysis and waveforms. Design relationships will also be presented.

  13. Design of power electronics for TVC and EMA systems

    NASA Technical Reports Server (NTRS)

    Nelms, R. Mark; Bell, J. Brett; Shepherd, Michael T.

    1994-01-01

    The EMA systems proposed for future space transportation applications are high power systems operating at voltages up to 270 Vdc and at current levels on the order of hundreds of amperes. The position of the actuator is controlled by modulating the flow of energy from the source to an electric motor with an inverter. Hard-switching of the semiconductor devices in the inverter results in considerable device switching stresses and losses and in the generation of substantial amounts of EMI. Both of these can be reduced by employing zero-voltage-switching (ZVS) techniques in the inverter. This project has focused on the development of a ZVS inverter for the Marshall Space Center EMA prototypes, which utilize brushless dc motors to convert electrical energy to mechanical energy. An inverter which permitted zero-voltage switching and a quasi-PWM operation was selected for study and implementation. A waveshaping circuit is added to the front of a standard three-phase inverter to achieve the desired switching properties. This circuit causes the input voltage of the three-phase inverter to ring to zero where it is clamped for a short period of time. During this zero-voltage period, any of the semiconductor switches in the three-phase inverter are switched on or off at zero voltage resulting in a reduction in switching losses and EMI. The operation of this waveshaping circuit and its interaction with the three-phase inverter are described. The different circuit modes were analyzed using equivalent circuits. Based on this analysis, design relationships were developed for calculating component values for the circuit elements in the waveshaping circuit. Waveforms of various voltages and currents in the waveshaping circuit were plotted and used to determine the ratings of the semiconductors in the waveshaping circuit. The implementation of this inverter are described. Block diagrams for the overall control system and the waveshaping circuit control are presented and discussed

  14. Design of power electronics for TVC and EMA systems

    NASA Technical Reports Server (NTRS)

    Nelms, R. Mark; Bell, J. Brett; Shepherd, Michael T.

    1994-01-01

    The Component Development Division of the Propulsion Laboratory at Marshall Space Flight Center (MSFC) is currently developing a class of electromechanical actuators (EMA's) for use in space transportation applications such as thrust vector control (TVC) and propellant control valves (PCV). These high power servomechanisms will require rugged, reliable, and compact power electronic modules capable of modulating several hundred amperes of current at up to 270 volts. MSFC has selected the brushless dc motor for implementation in EMA's. A previous project performed by Auburn University examined the use of the resonant dc link (RDCL) inverter, pulse density modulation (PDM), and mos-controlled thyristors (MCT's) for speed control of a brushless dc motor. The speed of the brushless dc motor is proportional to the applied stator voltage. In a PDM system, the control system determines the number of resonant voltage pulses which must be applied to the stator to achieve a desired speed. The addition of a waveshaping circuit to the front end of a standard three-phase inverter yields a RDCL inverter; the resonant voltage pulses are produced through the action of this wave shaping circuit and the inverter. This project has focused on the implementation of a system which permits zero-voltage switching with the bus voltage clamped at the input voltage level. In the same manner as the RDCL inverter, the inverter selected for this implementation is a combination of waveshaping circuit and a standard three-phase inverter. In addition, this inverter allows a pulse-width modulated (PWM)-like control scheme instead of a PDM scheme. The operation of waveshaping circuit will be described through analysis and waveforms. Design relationships will also be presented.

  15. oRis: multiagents approach for image processing

    NASA Astrophysics Data System (ADS)

    Rodin, Vincent; Harrouet, Fabrice; Ballet, Pascal; Tisseau, Jacques

    1998-09-01

    In this article, we present a parallel image processing system based on the concept of reactive agents. This means that, in our system, each agent has a very simple behavior which allows it to take a decision (find out an edge, a region, ...) according to its position in the image and to the information enclosed in it. Our system lies in the oRis language, which allows to describe very finely and simply the agents' behaviors. In fact, oRis is an interpreted and dynamic multiagent language. First of all, oRis is an object language with the use of classes regrouping attributes and methods. The syntax is close to the C++ language and includes notions of multiple inheritance, oRis is also an agent language: every object with a method `main()' becomes an agent. This method is cyclically executed by the system scheduler and corresponds to the agent behavior. We also present an application made with oRis. This application allows to detect concentric striae located on different natural `objects' (age-rings of tree, fish otolith growth rings, striae of some minerals, ...). The stopping of the multiagent system is implemented through a technique issued from immunology: the apoptosis.

  16. Energy Materials Coordinating Committee (EMaCC) Fiscal Year 1999 annual technical report

    SciTech Connect

    2000-10-31

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department`s materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. This report summarizes EMaCC activities for FY 1999 and describes the materials research programs of various offices and divisions within the Department.

  17. Apsidal motion in eclipsing binaries: FT Ori and MZ Lac

    NASA Astrophysics Data System (ADS)

    Bulut, A.; Bulut, I.; ćiçek, C.; Erdem, A.

    2016-03-01

    In this study, the apsidal motion analysis of two eccentric eclipsing binaries, FT Ori (P = 3.150 days, e = 0.397) and MZ Lac (P = 3.158 days, e = 0.399), have been presented. Their O - C diagrams were studied using all reliable times of minima found in the literature and new values for the elements of the apsidal motion for two systems have been computed. We found long periods of apsidal motion of 538 ± 12 years and 424 ± 6 years for FT Ori and MZ Lac, respectively.

  18. Energy materials coordinating committee (EMaCC). Annual technical report, fiscal year 2003

    SciTech Connect

    none,

    2004-10-18

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. Topical subcommittees of the EMaCC are responsible for conducting seminars and otherwise facilitating information flow between DOE organizational units in materials areas of particular importance to the Department. The EMaCC Terms of Reference were recently modified and developed into a Charter that was approved on June 5, 2003. As a result of this reorganization, the existing subcommittees were disbanded and new subcommittees are being formed.

  19. Hot Spot Detection System Using Landsat 8/OLI Data

    NASA Astrophysics Data System (ADS)

    Kato, S.; Nakamura, R.; Oda, A.; Iijima, A.; Kouyama, T.; Iwata, T.

    2015-12-01

    We developed a simple algorithm and a Web-based visualizing system to detect hot spots using Landsat 8 OLI multispectral data as one of the applications of the real-time processing of Landsat 8 data. An empirical equation and radiometric and reflective thresholds were derived to detect hot spots using the OLI data at band 5 (0.865 μm) and band 7 (2.200 μm) based on the increase in spectral radiance at shortwave infrared (SWIR) region due to the emission from objects with high surface temperature. We surveyed typical patterns of surface spectra using the ASTER spectral library to delineate a threshold to distinguish hot spots from background surfaces. To adjust the empirical coefficients of our detection algorithm, we visually inspected the detected hot spots using 6593 Landsat 8 scenes, which cover eastern part of East Asia, taken from January 1, 2014 to December 31, 2014, displayed on a dedicated Web GIS system. Eventually we determined threshold equations which can theoretically detect hot spots at temperatures above 230 °C over isothermal pixels and hot spots as small as 1 m2 at temperatures of 1000 °C as the lowest temperature and the smallest subpixel coverage, respectively, for daytime scenes. The algorithm detected hot spots including wildfires, volcanos, open burnings and factories. 30-m spatial resolution of Landsat 8 enabled to detect wild fires and open burnings accompanied by clearer shapes of fire front lines than MODIS and VIIRS fire products. Although the 16-day revisit cycle of Landsat 8 is too long to effectively find unexpected wildfire or outbreak of eruption, the revisit cycle is enough to monitor temporally stable heat sources, such as continually erupting volcanos and factories. False detection was found over building rooftops, which have relatively smooth surfaces at longer wavelengths, when specular reflection occurred at the satellite overpass.

  20. Energy Materials Coordinating Committee (EMaCC). Annual technical report, Fiscal Year 2001

    SciTech Connect

    None, None

    2002-08-01

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations.

  1. 42 CFR 93.217 - Office of Research Integrity or ORI.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false Office of Research Integrity or ORI. 93.217 Section... POLICIES ON RESEARCH MISCONDUCT Definitions § 93.217 Office of Research Integrity or ORI. Office of Research Integrity or ORI means the office to which the HHS Secretary has delegated responsibility...

  2. 42 CFR 93.403 - ORI review of research misconduct proceedings.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false ORI review of research misconduct proceedings. 93... POLICIES ON RESEARCH MISCONDUCT Responsibilities of the U.S. Department of Health and Human Services Research Misconduct Issues § 93.403 ORI review of research misconduct proceedings. ORI may conduct...

  3. 42 CFR 93.217 - Office of Research Integrity or ORI.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false Office of Research Integrity or ORI. 93.217 Section... POLICIES ON RESEARCH MISCONDUCT Definitions § 93.217 Office of Research Integrity or ORI. Office of Research Integrity or ORI means the office to which the HHS Secretary has delegated responsibility...

  4. 42 CFR 93.403 - ORI review of research misconduct proceedings.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false ORI review of research misconduct proceedings. 93... POLICIES ON RESEARCH MISCONDUCT Responsibilities of the U.S. Department of Health and Human Services Research Misconduct Issues § 93.403 ORI review of research misconduct proceedings. ORI may conduct...

  5. 42 CFR 93.403 - ORI review of research misconduct proceedings.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 42 Public Health 1 2012-10-01 2012-10-01 false ORI review of research misconduct proceedings. 93... POLICIES ON RESEARCH MISCONDUCT Responsibilities of the U.S. Department of Health and Human Services Research Misconduct Issues § 93.403 ORI review of research misconduct proceedings. ORI may conduct...

  6. 42 CFR 93.403 - ORI review of research misconduct proceedings.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 42 Public Health 1 2013-10-01 2013-10-01 false ORI review of research misconduct proceedings. 93... POLICIES ON RESEARCH MISCONDUCT Responsibilities of the U.S. Department of Health and Human Services Research Misconduct Issues § 93.403 ORI review of research misconduct proceedings. ORI may conduct...

  7. Energy Materials Coordinating Committee (EMaCC): Annual technical report, fiscal year 1988

    SciTech Connect

    1989-06-30

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further the effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. Four topical subcommittees are established and are continuing their own programs: Structural Ceramics, Batteries and Fuel Cells, Radioactive Waste Containment, and Superconductivity (established in FY 1987). In addition, the EMaCC aids in obtaining materials-related inputs for both intra- and interagency compilations. Membership in the EMaCC is open to any Department organizational unit; participants are appointed by Division or Office Directors. The current active membership is listed on the following four pages. The EMaCC reports to the Director of the Office of Energy Research in his capacity as overseer of the technical programs of the Department. This annual technical report is mandated by the EMaCC terms of reference. This report summarizes EMaCC activities for FY 1988 and describes the materials research programs of various offices and divisions within the Department.

  8. Cellular transcription factors enhance herpes simplex virus type 1 oriS-dependent DNA replication.

    PubMed

    Nguyen-Huynh, A T; Schaffer, P A

    1998-05-01

    The herpes simplex virus type 1 (HSV-1) origin of DNA replication, oriS, contains three binding sites for the viral origin binding protein (OBP) flanked by transcriptional regulatory elements of the immediate-early genes encoding ICP4 and ICP22/47. To assess the role of flanking sequences in oriS function, plasmids containing oriS and either wild-type or mutant flanking sequences were tested in transient DNA replication assays. Although the ICP4 and ICP22/47 regulatory regions were shown to enhance oriS function, most individual elements in these regions, including the VP16-responsive TAATGARAT elements, were found to be dispensable for oriS function. In contrast, two oriS core-adjacent regulatory (Oscar) elements, OscarL and OscarR, at the base of the oriS palindrome were shown to enhance oriS function significantly and additively. Specifically, mutational disruption of either element reduced oriS-dependent DNA replication by 60 to 70%, and disruption of both elements reduced replication by 90%. The properties of protein-DNA complexes formed in gel mobility shift assays using uninfected and HSV-1-infected Vero cell nuclear extracts demonstrated that both OscarL and OscarR are binding sites for cellular proteins. Whereas OscarR does not correspond to the consensus binding site of any known transcription factor, OscarL contains a consensus binding site for the transcription factor Sp1. Gel mobility shift and supershift experiments using antibodies directed against members of the Sp1 family of transcription factors demonstrated the presence of Sp1 and Sp3, but not Sp2 or Sp4, in the protein-DNA complexes formed at OscarL. The abilities of OscarL and OscarR to bind their respective cellular proteins correlated directly with the efficiency of oriS-dependent DNA replication. Cooperative interactions between the Oscar-binding factors and proteins binding to adjacent OBP binding sites were not observed. Notably, Oscar element mutations that impaired oriS-dependent DNA

  9. Rapid variability of the EXor star NY Ori

    NASA Astrophysics Data System (ADS)

    Lorenzetti, D.; Arkharov, A. A.; Efimova, N.; Giannini, T.; Antoniucci, S.; Di Paola, A.; Larionov, V. M.

    2016-03-01

    We report on a rapid brightness variability of the classical EXor star NY Ori observed with the AZT24 1m IR telescope (Campo Imperatore, Italy), as a part of our program EXORCISM (EXOR OptiCal and Infrared Systematic Monitoring - Antoniucci et al. 2013 PPVI; Lorenzetti et al. 2009 ApJ 693, 1056).

  10. 42 CFR 93.402 - ORI allegation assessments.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 42 Public Health 1 2014-10-01 2014-10-01 false ORI allegation assessments. 93.402 Section 93.402 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES HEALTH ASSESSMENTS AND HEALTH EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Responsibilities of...

  11. 42 CFR 93.402 - ORI allegation assessments.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 42 Public Health 1 2011-10-01 2011-10-01 false ORI allegation assessments. 93.402 Section 93.402 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES HEALTH ASSESSMENTS AND HEALTH EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES...

  12. 42 CFR 93.402 - ORI allegation assessments.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false ORI allegation assessments. 93.402 Section 93.402 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES HEALTH ASSESSMENTS AND HEALTH EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES...

  13. Varicella-zoster virus (VZV) origin of DNA replication oriS influences origin-dependent DNA replication and flanking gene transcription.

    PubMed

    Khalil, Mohamed I; Sommer, Marvin H; Hay, John; Ruyechan, William T; Arvin, Ann M

    2015-07-01

    The VZV genome has two origins of DNA replication (oriS), each of which consists of an AT-rich sequence and three origin binding protein (OBP) sites called Box A, C and B. In these experiments, the mutation in the core sequence CGC of the Box A and C not only inhibited DNA replication but also inhibited both ORF62 and ORF63 expression in reporter gene assays. In contrast the Box B mutation did not influence DNA replication or flanking gene transcription. These results suggest that efficient DNA replication enhances ORF62 and ORF63 transcription. Recombinant viruses carrying these mutations in both sites and one with a deletion of the whole oriS were constructed. Surprisingly, the recombinant virus lacking both copies of oriS retained the capacity to replicate in melanoma and HELF cells suggesting that VZV has another origin of DNA replication. PMID:25795313

  14. Iron-dependent gene expression in Actinomyces oris

    PubMed Central

    Mulé, Matthew P.; Giacalone, David; Lawlor, Kayla; Golden, Alexa; Cook, Caroline; Lott, Thomas; Aksten, Elizabeth; O'Toole, George A.; Bergeron, Lori J.

    2015-01-01

    Background Actinomyces oris is a Gram-positive bacterium that has been associated with healthy and diseased sites in the human oral cavity. Most pathogenic bacteria require iron to survive, and in order to acquire iron in the relatively iron-scarce oral cavity A. oris has been shown to produce iron-binding molecules known as siderophores. The genes encoding these siderophores and transporters are thought to be regulated by the amount of iron in the growth medium and by the metal-dependent repressor, AmdR, which we showed previously binds to the promoter of proposed iron-regulated genes. Objective The purpose of this study was to characterize siderophore and associated iron transport systems in A. oris. Design We examined gene expression of the putative iron transport genes fetA and sidD in response to low- and high-iron environments. One of these genes, sidD, encoding a putative Fe ABC transporter protein, was insertionally inactivated and was examined for causing growth defects. To gain a further understanding of the role of iron metabolism in oral diseases, clinical isolates of Actinomyces spp. were examined for the presence of the gene encoding AmdR, a proposed global regulator of iron-dependent gene expression in A. oris. Results When A. oris was grown under iron-limiting conditions, the genes encoding iron/siderophore transporters fetA and sidD showed increased expression. One of these genes (sidD) was mutated, and the sidD::Km strain exhibited a 50% reduction in growth in late log and stationary phase cells in media that contained iron. This growth defect was restored when the sidD gene was provided in a complemented strain. We were able to isolate the AmdR-encoding gene in seven clinical isolates of Actinomyces. When these protein sequences were aligned to the laboratory strain, there was a high degree of sequence similarity. Conclusions The growth of the sidD::Km mutant in iron-replete medium mirrored the growth of the wild-type strain grown in iron

  15. The Open Learning Initiative: Measuring the Effectiveness of the OLI Statistics Course in Accelerating Student Learning

    ERIC Educational Resources Information Center

    Lovett, Marsha; Meyer, Oded; Thille, Candace

    2008-01-01

    The Open Learning Initiative (OLI) is an open educational resources project at Carnegie Mellon University that began in 2002 with a grant from The William and Flora Hewlett Foundation. OLI creates web-based courses that are designed so that students can learn effectively without an instructor. In addition, the courses are often used by instructors…

  16. Development of electrochemical super capacitors for EMA applications

    NASA Technical Reports Server (NTRS)

    Kosek, J. A.; Dunning, T.; Laconti, A. B.

    1995-01-01

    In a NASA SBIR Phase I program (Contract No. NAS8-40119), Giner, Inc. evaluated the feasibility of fabricating an all-solid-ionomer multicell electrochemical capacitor having a unit cell capacitance greater than 2 F/sq cm and a repeating element thickness of 6 mils. This capacitor can possibly be used by NASA as a high-rate energy source for electromechanical actuator (EMA) activation for advanced space missions. The high unit cell capacitance and low repeating element thickness will allow for the fabrication of a low-volume, low-weight device, favorable characteristics for space applications. These same characteristics also make the capacitor attractive for terrestrial applications, such as load-leveling batteries or fuel cells in electric vehicle applications. Although the projected energy densities for electrochemical capacitors are about two orders of magnitude lower than that of batteries, the high-power-density characteristics of these devices render them as potentially viable candidates for meeting pulse or peak electrical power requirements for some anticipated aerospace mission scenarios, especially those with discharge times on the millisecond to second time scale. On a volumetric or gravimetric basis, the advantages of utilizing electrochemical capacitors rather than batteries for meeting the peak power demands associated with a specific mission scenario will largely depend upon the total and pulse durations of the power peaks. The effect of preparation conditions on RuO(x), the active component in an all-solid-ionomer electrochemical capacitor, was evaluated during this program. Methods were identified to prepare RuO(x) having a surface areagreater than 180 sq m/g, and a capacitance of greater than 2 F/sq cm. Further efforts to reproducibly obtain these high-surface-area materials in scaled-up batches will be evaluated in Phase 2. During this Phase 1 program we identified a superior Nafion 105 membrane, having a film thickness of 5 mils, that showed

  17. Energy Materials Coordinating Committee (EMaCC): Annual technical report, fiscal year 1993

    SciTech Connect

    Not Available

    1994-07-01

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department`s materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. This report summarizes EMaCC activities for FY 1993 and describes the materials research programs of various offices and divisions within the Department. The program descriptions consist of a funding summary for each Assistant Secretary office and the Office of Energy Research, and detailed project summaries with project goals and accomplishments. The FY 1993 budget summary table for DOE Materials Activities in each of the programs is presented.

  18. A Report on the Present Status of Engineering Mathematics Test (EMaT)

    NASA Astrophysics Data System (ADS)

    Watanabe, Toshimasa; Takafuji, Daisuke

    The aim of Engineering Mathematics Test (EMaT) is to make sure what essentials in curriculum of Engineering Mathematics is, and to assess university students’ core academic competence and achievement of Engineering Mathematics, helping assurance of students’ academic ability. It is useful for professors to evaluate teaching effect of the classes, and this evaluation would help them improve curricula. Scores can be available for both graduate school entrance examinations and employment tests, leading to selecting persons with basic academic ability in Engineering Mathematics. The scope includes fundamentals in Calculus, Linear Algebra, Differential Equations, and Probability and Statistics. It is open to all students free of charge, and is annually given once in December. In 2007, 2,396 students from 35 universities took EMaT, and the total number of students who have taken EMaT in these 5 years is 6,240.

  19. White spots in pharmaceutical pipelines-EMA identifies potential areas of unmet medical needs.

    PubMed

    Papaluca, Marisa; Greco, Martina; Tognana, Enrico; Ehmann, Falk; Saint-Raymond, Agnès

    2015-05-01

    Unmet medical needs are a priority for organizations such as the WHO and major public-private initiatives, such as Innovative Medicines Initiative, were established to speed up the development of better and safer medicines for patients. To assist such projects, the EMA in its 'Road Map to 2015' considered the mapping of unmet medical needs as a priority. This study has identified medical conditions for which the EMA could not identify developments in the pharmaceutical pipelines, that is, 'white spots'. Our analysis was made using external data sources as well as mining data of the EMA. The main areas for white spots were oncology, infectious diseases and certain psychiatric conditions. According to our data and a review of literature, in a number of these white spots, diagnostic tools may even be missing. The identification of those conditions will benefit stakeholders, including regulators, research funding bodies and patients' organizations. PMID:25797498

  20. Determination of mandibular border and functional movement protocols using an electromagnetic articulograph (EMA)

    PubMed Central

    Fuentes, Ramon; Navarro, Pablo; Curiqueo, Aldo; Ottone, Nicolas E

    2015-01-01

    The electromagnetic articulograph (EMA) is a device that can collect movement data by positioning sensors at multiple points, measuring displacements of the structure in real time, as well as the acoustics and mechanics of speech using a microphone connected to the measurement system. The aim of this study is to describe protocols for the generation, measurement and visualization of mandibular border and functional movements in the three spatial planes (frontal, sagittal and horizontal) using the EMA. The EMA has transmitter coils that determine magnetic fields to collect information about movements from sensors located on different structures (tongue, palate, mouth, incisors, skin, etc.) and in every direction in an area of 300 mm. After measurement with the EMA, the information is transferred to a computer and read with the Visartico software to visualize the recording of the mandibular movements registered by the EMA. The sensors placed in the space between the three axes XYZ are observed, and then the plots created from the mandibular movements included in the corresponding protocol can be visualized, enabling interpretation of these data. Four protocols for the obtaining of images of the opening and closing mandibular movements were defined and developed, as well as border movements in the frontal, sagittal and horizontal planes, managing to accurately reproduce Posselt’s diagram and Gothic arch on the latter two axes. Measurements with the EMA will allow more exact data to be collected in relation to the mandibular clinical physiology and morphology, which will permit more accurate diagnoses and application of more precise and adjusted treatments in the future. PMID:26884903

  1. Intragenomic linear amplification of human herpesvirus 6B oriLyt suggests acquisition of oriLyt by transposition.

    PubMed Central

    Stamey, F R; Dominguez, G; Black, J B; Dambaugh, T R; Pellett, P E

    1995-01-01

    We identified some passage lineages of human herpesvirus 6 variant B (HHV-6B) strain Z29 that contain as many as 12 tandem copies of a genomic segment that corresponds almost precisely to a previously identified minimal efficient origin of lytic replication (oriLyt). Analysis of nucleotide sequences in the vicinity of the amplified segment suggests that the amplification occurred as a two-step process, with the first step being a rare sequence duplication mediated through directly repeated sequences located near the termini of the amplified segment and the second step occurring via homologous recombination through the duplicated sequence. These results demonstrate that oriLyt has been amplified in some virus stocks and indicate that (i) origin amplification confers a growth advantage on the virus in cell culture and (ii) laboratory-passaged HHV-6B genomes can accommodate additional nucleotide sequences and thus may be useful gene transfer vectors. The structures of the amplified segment and its adjacent sequences together suggest that HHV-6B or a progenitor virus acquired oriLyt by transposition from an unknown source. PMID:7983761

  2. Energy Materials Coordinating Committee (EMaCC). Annual Technical Report, Fiscal Year 2000

    SciTech Connect

    none,

    2001-07-31

    The Energy Materials Coordinating Committee Annual Report (attached, DOE/SC-0040) provides an annual summary of non-classified materials-related research programs supported by various elements within the Department of Energy. The EMaCC Annual Report is a useful working tool for project managers who want to know what is happening in other divisions, and it provides a guide for persons in industry and academia to the materials program within the Department. The major task of EMaCC this year was to make the Annual Report a more user-friendly document by removing redundant program information and shortening the project summaries.

  3. A review of Māori astronomy in Aotearoa-New Zealand

    NASA Astrophysics Data System (ADS)

    Harris, Pauline; Matamua, Rangi; Smith, Takirirangi; Kerr, Hoturoa; Waaka, Toa

    2013-11-01

    Across the world indigenous people are seeking to reclaim their traditional knowledge. Within the last fifty years the Māori of Aotearoa-New Zealand have made significant efforts to reclaim their language, arts and science. Part of this renaissance includes a growing Māori movement to reclaim their astronomical knowledge. Māori astronomical understanding was infused throughout much of pre-colonial Māori life, culture and belief. The Sun, Moon and stars were an integral part of practices pertaining to agriculture, architecture, fishing, calendrical systems and exploration. Although early ethnographers attempted to record this knowledge, their works seem to only reflect a somewhat superficial level of understanding. Thus this paper highlights some of the current research being conducted on Māori astronomy, which seeks a greater understanding of how the ancestors of the Māori perceived the heavens.

  4. Elicitin-like proteins Oli-D1 and Oli-D2 from Pythium oligandrum trigger hypersensitive response in Nicotiana benthamiana and induce resistance against Botrytis cinerea in tomato.

    PubMed

    Ouyang, Zhigang; Li, Xiaohui; Huang, Lei; Hong, Yongbo; Zhang, Yafen; Zhang, Huijuan; Li, Dayong; Song, Fengming

    2015-04-01

    The biocontrol agent Pythium oligandrum and its elicitin-like proteins oligandrins have been shown to induce disease resistance in a range of plants. In the present study, the ability of two oligandrins, Oli-D1 and Oli-D2, to induce an immune response and the possible molecular mechanism regulating the defence responses in Nicotiana benthamiana and tomato were investigated. Infiltration of recombinant Oli-D1 and Oli-D2 proteins induced a typical immune response in N. benthamiana including the induction of a hypersensitive response (HR), accumulation of reactive oxygen species and production of autofluorescence. Agrobacterium-mediated transient expression assays revealed that full-length Oli-D1 and Oli-D2 were required for full HR-inducing activity in N. benthamiana, and virus-induced gene silencing-mediated knockdown of some of the signalling regulatory genes demonstrated that NbSGT1 and NbNPR1 were required for Oli-D1 and Oli-D2 to induce HR in N. benthamiana. Subcellular localization analyses indicated that both Oli-D1 and Oli-D2 were targeted to the plasma membrane of N. benthamiana. When infiltrated or transiently expressed in leaves, Oli-D1 and Oli-D2 induced resistance against Botrytis cinerea in tomato and activated the expression of a set of genes involved in the jasmonic acid/ethylene (JA/ET)-mediated signalling pathway. Our results demonstrate that Oli-D1 and Oli-D2 are effective elicitors capable of inducing immune responses in plants, probably through the JA/ET-mediated signalling pathway, and that both Oli-D1 and Oli-D2 have potential for the development of bioactive formulae for crop disease control in practice. PMID:25047132

  5. IMAPS Observations Of Atomic Deuterium Toward Delta ORI A

    NASA Astrophysics Data System (ADS)

    Jenkins, E. B.; Tripp, T. M.; Wozniak, P. R.; Sofia, U. J.; Sonneborn, G.

    1998-12-01

    The Interstellar Medium Absorption Profile Spectrograph (IMAPS) recorded the Ldelta and Lepsilon D and H absorption features in the spectrum of delta Ori A during the ORFEUS-SPAS II mission in late 1996. The resolution of 4 km s(-1) provides a substantial improvement over previous spectra recorded by the Copernicus satellite. Our 90% confidence interval for the deuterium column density toward delta Ori A is 0.96 < N(D I) < 1.45x 10(15) cm(-2) . To derive the ratio of atomic D to H, we evaluated the damped Lalpha profile recorded in many high-dispersion spectra of delta Ori A in the IUE archive and used the dispersion of the results to help us estimate the probable systematic errors. From this exercise, we conclude that N(H I)=1.54 +/- 0.08 x 10(20) cm(-2) . Combining the D and H results gives D/H=7.5(+1.9}_{-1.4) x 10(-6) , a finding that is lower than 1.5x 10(-5) reported for lines of sight to cool stars within the local region and also IMAPS results for gamma (2) Vel and zeta Pup reported by Sonneborn, et al (another abstract in this session). Our conclusion that D/H could vary in the interstellar medium in the local region of our Galaxy is consistent with independent findings by Vidal-Madjar, et al. (1998: Astr. Ap. 338, 694) for the line of sight to G191-B2B.

  6. Energy materials coordinating committee (EMaCC). Annual technical report, fiscal year 2002

    SciTech Connect

    none,

    2003-08-08

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. Topical subcommittees of the EMaCC are responsible for conducting seminars and otherwise facilitating information flow between DOE organizational units in materials areas of particular importance to the Department. The EMaCC Terms of Reference were recently modified and developed into a Charter that was approved on June 5, 2003. As a result of this reorganization, the existing subcommittees were disbanded and new subcommittees are being formed. The EMaCC Charter and the memorandum approving it are presented in the Appendix of this report. The FY 2002 budget summary for DOE Materials Activities is presented on page 8. The distribution of these funds between DOE laboratories, private industry, academia and other organizations is presented in tabular form on page 10. Following the budget summary is a set of detailed program descriptions for the FY 2002 DOE Materials activities. These descriptions are presented according to the organizational structure of the Department. A mission statement, a budget summary listing the project titles and FY 2002 funding, and detailed project summaries are presented for each Assistant Secretary office, the Office of Science, and the National Nuclear Security Administration. The project summaries also provide DOE, laboratory, academic and industrial contacts for each project, as appropriate.

  7. Mid-IR Photometry and Near-IR Spectroscopy of the FU Ori Protostar V2775 Ori (HOPS 223)

    NASA Astrophysics Data System (ADS)

    Fischer, William J.; Safron, Emily J.; Megeath, S. Thomas; Terebey, Susan; Soto, Edith; Wilson, Thomas L.; Adams, Joseph D.

    2016-02-01

    On 2015 November 20.39, we obtained mid-IR photometry of V2775 Ori (HOPS 223) with the FORCAST instrument aboard SOFIA. This is a low-mass embedded young stellar object that was reported to have undergone a luminosity outburst by Caratti o Garatti et al. (2011, A & A, 526, L1). Fischer et al. (2012, ApJ, 756, 99) dated the beginning of the outburst to between 2005 April and 2007 March and discussed the similarity of its near-IR spectrum to that of FU Orionis.

  8. 42 CFR 93.217 - Office of Research Integrity or ORI.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Definitions § 93.217 Office of Research Integrity or ORI. Office of... addressing research integrity and misconduct issues related to PHS supported activities. ... 42 Public Health 1 2012-10-01 2012-10-01 false Office of Research Integrity or ORI. 93.217...

  9. 42 CFR 93.217 - Office of Research Integrity or ORI.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Definitions § 93.217 Office of Research Integrity or ORI. Office of... addressing research integrity and misconduct issues related to PHS supported activities. ... 42 Public Health 1 2013-10-01 2013-10-01 false Office of Research Integrity or ORI. 93.217...

  10. 42 CFR 93.309 - Reporting to ORI on the decision to initiate an investigation.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 1 2010-10-01 2010-10-01 false Reporting to ORI on the decision to initiate an... PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Responsibilities of Institutions The Institutional Inquiry § 93.309 Reporting to ORI on the decision to initiate an investigation. (a) Within 30 days...

  11. The complexities of designing therapy for Māori living with stroke-related communication disorders.

    PubMed

    Brewer, Karen M

    2016-01-01

    Stroke-related communication disorders can have a substantial impact on Māori whānau (extended family). Timely and appropriate speech-language therapy is required, but there are many challenges in providing this. In this article we discuss the need for a kaupapa Māori approach to speech-language therapy that is designed by Māori for Māori, and undertaken in a Māori way. We report the results of a literature review that revealed a small but significant body of literature describing Māori experiences of stroke, aphasia and speech-language therapy, and evidence that a Māori-specific therapy programme can improve outcomes for people with stroke. We then consider the social and political context that impacts the design and delivery of such an approach. Informed by the literature, we propose a hierarchy of skill and resource acquisition for speech-language therapists, in which they learn why to be culturally safe, how to be culturally safe, and how to interact before creating resources to build relationships, resources for education and for therapy. The creation of a kaupapa Māori speech-language therapy approach should bring together people with stroke, whānau members and service providers to create therapy that crosses sectors and disciplines and acknowledges the wider social and political context. PMID:27355171

  12. Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes

    PubMed Central

    Luo, Hao; Zhang, Chun-Ting; Gao, Feng

    2014-01-01

    DNA replication is one of the most basic processes in all three domains of cellular life. With the advent of the post-genomic era, the increasing number of complete archaeal genomes has created an opportunity for exploration of the molecular mechanisms for initiating cellular DNA replication by in vivo experiments as well as in silico analysis. However, the location of replication origins (oriCs) in many sequenced archaeal genomes remains unknown. We present a web-based tool Ori-Finder 2 to predict oriCs in the archaeal genomes automatically, based on the integrated method comprising the analysis of base composition asymmetry using the Z-curve method, the distribution of origin recognition boxes identified by FIMO tool, and the occurrence of genes frequently close to oriCs. The web server is also able to analyze the unannotated genome sequences by integrating with gene prediction pipelines and BLAST software for gene identification and function annotation. The result of the predicted oriCs is displayed as an HTML table, which offers an intuitive way to browse the result in graphical and tabular form. The software presented here is accurate for the genomes with single oriC, but it does not necessarily find all the origins of replication for the genomes with multiple oriCs. Ori-Finder 2 aims to become a useful platform for the identification and analysis of oriCs in the archaeal genomes, which would provide insight into the replication mechanisms in archaea. The web server is freely available at http://tubic.tju.edu.cn/Ori-Finder2/. PMID:25309521

  13. The Early ALMA View of the FU Ori Outburst System

    NASA Astrophysics Data System (ADS)

    Hales, A. S.; Corder, S. A.; Dent, W. R. D.; Andrews, S. M.; Eisner, J. A.; Cieza, L. A.

    2015-10-01

    We have obtained ALMA Band 7 observations of the FU Ori outburst system at a 0.″6 × 0.″5 resolution to measure the link between the inner disk instability and the outer disk through submillimeter continuum and molecular line observations. Our observations detect continuum emission that can be well-modeled by two unresolved sources located at the position of each binary component. The interferometric observations recover the entire flux reported in previous single-dish studies, ruling out the presence of a large envelope. Assuming that the dust is optically thin, we derive disk dust masses of 2 × 10‑4 M⊙ and 8× {10}-5 M⊙ for the north and south components, respectively. We place limits on the disks’ radii of r < 45 AU. We report the detection of molecular emission from 12CO(3-2), HCO+(4-3), and from HCN(4-3). The 12CO appears widespread across the two binary components and is slightly more extended than the continuum emission. The denser gas tracer HCO+ peaks close to the position of the southern binary component, while HCN appears to be peaked at the position of the northern component. This suggests that the southern binary component is embedded in denser molecular material, consistent with previous studies that indicate a heavily reddened object. At this angular resolution, any interaction between the two unresolved disk components cannot be disentangled. Higher-resolution images are vital for understanding the process of star formation via rapid accretion FU Ori-type episodes.

  14. New Cirrus Retrieval Algorithms and Results from eMAS during SEAC4RS

    NASA Astrophysics Data System (ADS)

    Holz, R.; Platnick, S. E.; Meyer, K.; Wang, C.; Wind, G.; Arnold, T.; King, M. D.; Yorks, J. E.; McGill, M. J.

    2014-12-01

    The enhanced MODIS Airborne Simulator (eMAS) scanning imager was flown on the ER-2 during the SEAC4RS field campaign. The imager provides measurements in 38 spectral channels from the visible into the 13μm CO2 absorption bands at approximately 25 m nadir spatial resolution at cirrus altitudes, and with a swath width of about 18 km, provided substantial context and synergy for other ER-2 cirrus observations. The eMAS is an update to the original MAS scanner, having new midwave and IR spectrometers coupled with the previous VNIR/SWIR spectrometers. In addition to the standard MODIS-like cloud retrieval algorithm (MOD06/MYD06 for MODIS Terra/Aqua, respectively) that provides cirrus optical thickness (COT) and effective particle radius (CER) from several channel combinations, three new algorithms were developed to take advantage of unique aspects of eMAS and/or other ER-2 observations. The first uses a combination of two solar reflectance channels within the 1.88 μm water vapor absorption band, each with significantly different single scattering albedo, allowing for simultaneous COT and CER retrievals. The advantage of this algorithm is that the strong water vapor absorption can significantly reduce the sensitivity to lower level clouds and ocean/land surface properties thus better isolating cirrus properties. A second algorithm uses a suite of infrared channels in an optimal estimation algorithm to simultaneously retrieve COT, CER, and cloud-top pressure/temperature. Finally, a window IR algorithm is used to retrieve COT in synergy with the ER-2 Cloud Physics Lidar (CPL) cloud top/base boundary measurements. Using a variety of quantifiable error sources, uncertainties for all eMAS retrievals will be shown along with comparisons with CPL COT retrievals.

  15. Energy Materials Coordinating Committee (EMaCC), Fiscal year 1992. Annual technical report

    SciTech Connect

    Not Available

    1993-05-01

    The DOE EMaCC serves to coordinate the department`s materials programs and to further effective use of materials expertise within the department. This document presents summaries of budgets and of research projects, arranged according to the offices of energy efficiency and renewable energy, energy research, environmental restoration and waste management, nuclear energy, civilian radioactive waste management, defense, and fossil energy. A directory and a keyword index are included.

  16. Energy Materials Coordinating Committee (EMaCC). Annual technical report, fiscal year 1983

    SciTech Connect

    1984-03-01

    The following text briefly describes the materials research programs of the Department of Energy. It is organized by office and organizational charts are provided to allow easy identification of the materials research programs of each office. These program descriptions have been prepared from inputs submitted by many different EMaCC members. This report is not a comprehensive summary of the Department's programs, but rather a compilation of the programs of those offices that submitted inputs.

  17. Energy materials coordinating committee (EMaCC). Annual technical report, fiscal year 2004

    SciTech Connect

    none,

    2005-08-31

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. Topical subcommittees of the EMaCC are responsible for conducting seminars and otherwise facilitating information flow between DOE organizational units in materials areas of particular importance to the Department. The EMaCC Terms of Reference were recently modified and developed into a Charter that was approved on June 5, 2003. As a result of this reorganization, the existing subcommittees were disbanded and new subcommittees are being formed. The FY 2004 budget summary for DOE Materials Activities is presented on page 8. The distribution of these funds between DOE laboratories, private industry, academia and other organizations is presented in tabular form on page 10. Following the budget summary is a set of detailed program descriptions for the FY 2004 DOE Materials activities. These descriptions are presented according to the organizational structure of the Department. A mission statement, a budget summary listing the project titles and FY 2004 funding, and detailed project summaries are presented for each Assistant Secretary office, the Office of Science, and the National Nuclear Security Administration. The project summaries also provide DOE, laboratory, academic and industrial contacts for each project, as appropriate.

  18. Energy materials coordinating committee (EMaCC). Annual technical report, fiscal year 2005

    SciTech Connect

    None, None

    2006-09-29

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. Topical subcommittees of the EMaCC are responsible for conducting seminars and otherwise facilitating information flow between DOE organizational units in materials areas of particular importance to the Department. The EMaCC Terms of Reference were recently modified and developed into a Charter that was approved on June 5, 2003. As a result of this reorganization, the existing subcommittees were disbanded and new subcommittees are being formed. The FY 2004 budget summary for DOE Materials Activities is presented on page 8. The distribution of these funds between DOE laboratories, private industry, academia and other organizations is presented in tabular form on page 10. Following the budget summary is a set of detailed program descriptions for the FY 2004 DOE Materials activities. These descriptions are presented according to the organizational structure of the Department. A mission statement, a budget summary listing the project titles and FY 2004 funding, and detailed project summaries are presented for each Assistant Secretary office, the Office of Science, and the National Nuclear Security Administration. The project summaries also provide DOE, laboratory, academic and industrial contacts for each project, as appropriate.

  19. Star Formation in the Cometary Globule Ori I-2

    NASA Astrophysics Data System (ADS)

    Mookerjea, Bhaswati; Sandell, Göran

    2009-11-01

    We investigate the young stellar population in and near the cometary globule Ori I-2. The analysis is based on deep Nordic Optical Telescope R-band and Hα images, JCMT SCUBA 450 and 850 μm images combined with near-infrared Two Micron All Sky Survey (2MASS) photometry and mid-infrared archival Spitzer images obtained with the Infrared Array Camera (IRAC; 3.6, 4.5, 5.8, and 8 μm), and MIPS (24 and 70 μm) instruments. We identify a total of 125 sources within the 5'×5' region imaged by the IRAC. Of these sources, 87 are detected in the R-band image and 51 are detected in the 2MASS. The detailed physical properties of the sources are explored using a combination of near/mid-infrared color-color diagrams, graybody fitting of spectral energy distributions (SEDs) and an online SED fitting tool that uses a library of two-dimensional radiation transfer based accretion models of young stellar objects with disks. Ori I-2 shows clear evidence of triggered star formation with four young low-luminosity pre-main-sequence (PMS) stars embedded in the globule. At least two, possibly as many as four, additional low-mass PMS objects were discovered in the field which are probably part of the young σ Orionis cluster. Among the PMS stars which have formed in the globule, MIR-54 is a young, deeply embedded Class 0/I object; MIR-51 and 52 are young Class II sources, while MIR-89 is a more evolved, heavily extincted Class II object with its apparent colors mimicking a Class 0/I object. The Class 0/I object MIR-54 coincides with a previously known IRAS source and is a strong submillimeter source. It is most likely the source for the molecular outflow and the large parsec-scale Herbig-Haro (HH) flow. However, the nearby Class II source, MIR-52, which is strong a Hα emission line star, also appears to drive an outflow approximately aligned with the outflow from MIR-54, and because of the proximity of the two outflows, either star could contribute. MIR-89 appears to excite a low

  20. Ocean Color Measurements from Landsat-8 OLI using SeaDAS

    NASA Technical Reports Server (NTRS)

    Franz, Bryan Alden; Bailey, Sean W.; Kuring, Norman; Werdell, P. Jeremy

    2014-01-01

    The Operational Land Imager (OLI) is a multi-spectral radiometer hosted on the recently launched Landsat-8 satellite. OLI includes a suite of relatively narrow spectral bands at 30-meter spatial resolution in the visible to shortwave infrared that make it a potential tool for ocean color radiometry: measurement of the reflected spectral radiance upwelling from beneath the ocean surface that carries information on the biogeochemical constituents of the upper ocean euphotic zone. To evaluate the potential of OLI to measure ocean color, processing support was implemented in SeaDAS, which is an open-source software package distributed by NASA for processing, analysis, and display of ocean remote sensing measurements from a variety of satellite-based multi-spectral radiometers. Here we describe the implementation of OLI processing capabilities within SeaDAS, including support for various methods of atmospheric correction to remove the effects of atmospheric scattering and absorption and retrieve the spectral remote-sensing reflectance (Rrs; sr exp 1). The quality of the retrieved Rrs imagery will be assessed, as will the derived water column constituents such as the concentration of the phytoplankton pigment chlorophyll a.

  1. OLiMPS. OpenFlow Link-layer MultiPath Switching

    SciTech Connect

    Newman, Harvey B.; Barczyk, Artur; Bredel, Michael

    2014-11-17

    The OLiMPS project’s goal was the development of an OpenFlow controller application allowing load balancing over multiple switched paths across a complex network topology. The second goal was to integrate the controller with Dynamic Circuit Network systems such as ESnet’s OSCARS. Both goals were achieved successfully, as laid out in this report.

  2. ORI2 inhibits coxsackievirus replication and myocardial inflammation in experimental murine myocarditis.

    PubMed

    Lim, Byung-Kwan; Kim, Jin Hee

    2014-01-01

    We purified ORI2 [3-(3,4-dihydroxyphenyl)acrylic acid 1-(3,4-dihydroxyphenyl)-2-methoxycarbonylethyl ester] from an extract of the plant Isodon excisus. We tested the antiviral effect of ORI2 in a coxsackievirus-induced myocarditis model. Coxsackievirus B3 (CVB3) is a common cause of myocarditis and dilated cardiomyopathy. Activation of extracellular signal-regulated kinase (ERK) and Akt signaling in virus-infected cells is essential for CVB3 replication. Antiviral compounds were screened by HeLa cell survival assay. Several purified natural compounds were added to HeLa cells cultured in 96-well plates for 30 min after 1 multiplicity of infection (m.o.i) CVB3 infection. ORI2 significantly improved HeLa cell survival in a dose-dependent manner. For in vivo studies, BALB/c mice (n=20) were infected with CVB3, then 10 of the mice were treated by daily intraperitoneal injections of ORI2 (100 mM) for 3 consecutive days. ORI2 treatment significantly improved early survival in the treated mice compared to untreated mice (85% vs. 50%, respectively). Organ virus titers and myocardial damage were significantly lower in the ORI2-treated mice than in untreated mice. These results demonstrate that ORI2, delivered by intraperitoneal injection after CVB3 infection, has a significant antiviral effect by markedly inhibiting virus replication, resulting in a decrease in organ virus titer and myocardial damage. ORI2 may be developed as a potential therapeutic agent for the treatment of CVB3 infections. PMID:25273388

  3. A comparison of glacier classification with Sentinel 2 MSI and Landsat 8 OLI

    NASA Astrophysics Data System (ADS)

    Paul, Frank

    2016-04-01

    The recently launched Sentinel 2 satellite with its sensor Multi Spectral Imager (MSI) offers unprecedented possibilities for automated and much more precise glacier mapping at global scales than other freely available sensors (e.g. the commonly used Landsat). With its 10 m spatial resolution in the VNIR bands (20 m in SWIR) and the large swath width of 290 km it will theoretically be possible to map all glaciers in a country such as Switzerland or Austria in a single day. The higher repeat frequency also offers better chances for a cloud free acquisition in a comparably short end-of-summer time-window. As the spectral ranges of the VNIR and SWIR bands of MSI and the Operational Land Imager (OLI) on Landsat 8 are very similar, glaciers (clean ice and snow) can be mapped automatically with previously applied methods such as the TM3/5 (OLI4/6, MSI 4/11) band ratio. In this study a Sentinel 2 precursor dataset (from the commissioning phase) acquired on August 29, 2015 over the Swiss Alps is used to map glaciers with the band ratio method mentioned above and compared to outlines derived from a Landsat 8 OLI scene of the same region acquired only 2 days later (on 31.8. 2015). Additional to the classic red/SWIR band ratio, we have also used the 15 m resolution panchromatic band of OLI instead of the red band to map glaciers. Before the high-resolution band ratios were calculated, the SWIR bands of OLI and MSI were resampled with a bilinear interpolation to a two-times higher spatial resolution. The ratios were applied to the raw digital numbers of all bands without any further correction and threshold values were manually selected. First results show that the red/SWIR ratio for MSI required an additional threshold in the blue band for accurate mapping of snow and ice in shadow, whereas this was not required for OLI. In general, all outlines overlap within the geometric accuracy of the orthorectification, but the 30 m outlines from the OLI red/SWIR ratio were generally

  4. Development of an oriC vector for use in Mycoplasma synoviae.

    PubMed

    Shahid, Muhammad A; Marenda, Marc S; Markham, Philip F; Noormohammadi, Amir H

    2014-08-01

    Mycoplasma synoviae, an important poultry pathogen, belonging to the class Mollicutes, causes airsacculitis, synovitis, decreased egg production and produces significant economic losses. Efforts to determine M. synoviae virulence factors and their role in pathogenicity require suitable tools for genetic manipulation of this pathogen. This study describes, for the first time, the identification and cloning of the origin of replication (oriC) of M. synoviae to develop a replicable oriC vector for this mycoplasma. Shuttle vectors containing different putative oriC regions along with tetracycline resistance gene tetM were constructed to transform M. synoviae. An oriC vector, pMAS-LoriC, harbouring the complete dnaA gene along with upstream and downstream DnaA boxes, successfully transformed M. synoviae at an average transformation frequency of 1.07×10(-8) transformants per colony-forming unit (CFU), and remained freely replicating as well as integrated at the chromosomal oriC. Plasmid copy number for pMAS-LoriC was estimated to be 62±29 (average±SD) per cell. This study also provided evidence of the occurrence of homologous recombination and the functionality of the heterologous tetM determinant in M. synoviae. The transformation technique and the oriC vector developed in this study have the potential to be used in targeted gene disruption, gene complementation and expression studies in this organism. PMID:24880130

  5. Dependence on place: A source of autonomy in later life for older Māori.

    PubMed

    Butcher, Elizabeth; Breheny, Mary

    2016-04-01

    Attachment to place is an important component of ageing. Although the importance of place for older people's well-being is known, the ways in which different conceptions of place and expectations for what later life may hold depend upon cultural beliefs, values, and expectations is underexplored. This study examined the ways that place influences experiences of ageing for older Māori in New Zealand. Eight interviews with older Māori were analysed thematically alongside field notes from a research visit. Attachment to place provided the foundation for experiences of ageing for older Māori. Through their connection to place, the participants drew on a comforting and comfortable dependence on land and family to enable autonomy in later life. Rather than seeking to maintain independence in terms of avoiding reliance on others, older Māori conceptualised older age through autonomy and freedom to live in accordance with Māori values encapsulated by whakawhanaungatanga. A good old age depended on balancing competing demands of living in wider society with attachment to place and Māori identity in later life. PMID:27131278

  6. Identification of Water Bodies in a Landsat 8 OLI Image Using a J48 Decision Tree

    PubMed Central

    Acharya, Tri Dev; Lee, Dong Ha; Yang, In Tae; Lee, Jae Kang

    2016-01-01

    Water bodies are essential to humans and other forms of life. Identification of water bodies can be useful in various ways, including estimation of water availability, demarcation of flooded regions, change detection, and so on. In past decades, Landsat satellite sensors have been used for land use classification and water body identification. Due to the introduction of a New Operational Land Imager (OLI) sensor on Landsat 8 with a high spectral resolution and improved signal-to-noise ratio, the quality of imagery sensed by Landsat 8 has improved, enabling better characterization of land cover and increased data size. Therefore, it is necessary to explore the most appropriate and practical water identification methods that take advantage of the improved image quality and use the fewest inputs based on the original OLI bands. The objective of the study is to explore the potential of a J48 decision tree (JDT) in identifying water bodies using reflectance bands from Landsat 8 OLI imagery. J48 is an open-source decision tree. The test site for the study is in the Northern Han River Basin, which is located in Gangwon province, Korea. Training data with individual bands were used to develop the JDT model and later applied to the whole study area. The performance of the model was statistically analysed using the kappa statistic and area under the curve (AUC). The results were compared with five other known water identification methods using a confusion matrix and related statistics. Almost all the methods showed high accuracy, and the JDT was successfully applied to the OLI image using only four bands, where the new additional deep blue band of OLI was found to have the third highest information gain. Thus, the JDT can be a good method for water body identification based on images with improved resolution and increased size. PMID:27420067

  7. Identification of Water Bodies in a Landsat 8 OLI Image Using a J48 Decision Tree.

    PubMed

    Acharya, Tri Dev; Lee, Dong Ha; Yang, In Tae; Lee, Jae Kang

    2016-01-01

    Water bodies are essential to humans and other forms of life. Identification of water bodies can be useful in various ways, including estimation of water availability, demarcation of flooded regions, change detection, and so on. In past decades, Landsat satellite sensors have been used for land use classification and water body identification. Due to the introduction of a New Operational Land Imager (OLI) sensor on Landsat 8 with a high spectral resolution and improved signal-to-noise ratio, the quality of imagery sensed by Landsat 8 has improved, enabling better characterization of land cover and increased data size. Therefore, it is necessary to explore the most appropriate and practical water identification methods that take advantage of the improved image quality and use the fewest inputs based on the original OLI bands. The objective of the study is to explore the potential of a J48 decision tree (JDT) in identifying water bodies using reflectance bands from Landsat 8 OLI imagery. J48 is an open-source decision tree. The test site for the study is in the Northern Han River Basin, which is located in Gangwon province, Korea. Training data with individual bands were used to develop the JDT model and later applied to the whole study area. The performance of the model was statistically analysed using the kappa statistic and area under the curve (AUC). The results were compared with five other known water identification methods using a confusion matrix and related statistics. Almost all the methods showed high accuracy, and the JDT was successfully applied to the OLI image using only four bands, where the new additional deep blue band of OLI was found to have the third highest information gain. Thus, the JDT can be a good method for water body identification based on images with improved resolution and increased size. PMID:27420067

  8. The Escaping Spectroscopic Binary θ^1 Ori E

    NASA Astrophysics Data System (ADS)

    Costero, R.; Allen, C.; Echevarría, J.; Georgiev, L.; Poveda, A.; Richer, M. G.

    2008-12-01

    θ^1 Ori E was found to be a double-lined spectroscopic binary by Costero et al. (2006). From the analysis of 86 Echelle spectra obtained during three years, in which the systems of both components are separable, we found that the nearly identical spectra are consistent with both stars being early- to mid-G subgiant stars, with strong Li I λ 6708Å absorption and moderate emission Ca II K lines. The latter features are indicative of the pre-main-sequence evolutionary stage of the binary and, hence, of its membership to the Orion Nebula Cluster (ONC). The radial velocitiy curves of both components yield a circular orbit (e < 10^{-3}) for the binary, with a period of 9.8952+/-0.0007 d. The semi-amplitudes of the curves are almost identical (84.4+/-1.0 km s^{-1}) and the systemic velocity is 34.3+/-0.7 km s^{-1}. The latter value is 8.3 km s^{-1} larger, by at least 3σ, than the average radial velocity of the ONC members, and very similar to the transverse velocity (relative to component A in the Trapezium) derived for the star by Allen et al. (2004) and Sánchez et al. (2008). We conclude that the binary is escaping from the cluster in which it was formed.

  9. UX Ori Variables in the Cluster IC 348

    NASA Astrophysics Data System (ADS)

    Barsunova, O. Yu.; Grinin, V. P.; Sergeev, S. G.; Semenov, A. O.; Shugarov, S. Yu.

    2015-06-01

    Results are presented from many years of photometric (VRCIC) observations of three variable T Tauri type stars in the cluster IC 348: V712 Per, V719 Per, and V909 Per. All three stars have photometric activity characteristic of UX Ori stars. The activity of V719 Per has increased significantly over the last 10 years: the amplitude of its Algol-like minima has increased by roughly a factor of 4 and has reached three stellar magnitudes in the I band. Periodograms of the light curves do not confirm the periods found previously by other authors on the basis of shorter series of observations. The slope of the color tracks on "color-magnitude" diagrams is used to determine the reddening law for these stars owing to selective absorption by circumstellar dust. Modelling of these parameters by the Mie theory shows that the maximum size amax of the dust particles in the protoplanetary disks of these stars is 1.5-2 times greater than in the interstellar medium. In V712 Per and V909 Per, the bulk of the mass of the dust particles is concentrated near amax, while in V719 Per the average mass of the dust particles is determined by the minimum size of the particles. It should be emphasized that these conclusions rely on an analysis of the optical variability of these stars.

  10. Oro-facial gangrene (noma/cancrum oris): pathogenetic mechanisms.

    PubMed

    Enwonwu, C O; Falkler, W A; Idigbe, E O

    2000-01-01

    Cancrum oris (Noma) is a devastating infectious disease which destroys the soft and hard tissues of the oral and para-oral structures. The dehumanizing oro-facial gangrenous lesion affects predominantly children ages 2 to 16 years, particularly in sub-Saharan Africa, where the estimated frequency in some communities varies from 1 to 7 cases per 1000 population. The risk factors are poverty, malnutrition, poor oral hygiene, residential proximity to livestock in unsanitary environments, and infectious diseases, particularly measles and those due to the herpesviridae. Infections and malnutrition impair the immune system, and this is the common denominator for the occurrence of noma. Acute necrotizing gingivitis (ANG) and oral herpetic ulcers are considered the antecedent lesions, and ongoing studies suggest that the rapid progression of these precursor lesions to noma requires infection by a consortium of micro-organisms, with Fusobacterium necrophorum (Fn) and Prevotella intermedia (Pi) as the suspected key players. Additional to production of a growth-stimulating factor for Pi, Fn displays a classic endotoxin, a dermonecrotic toxin, a cytoplasmic toxin, and a hemolysin. Without appropriate treatment, the mortality rate from noma is 70-90%. Survivors suffer the two-fold afflictions of oro-facial mutilation and functional impairment, which require a time-consuming, financially prohibitive surgical reconstruction. PMID:12002813

  11. BCS Biowaivers: Similarities and Differences Among EMA, FDA, and WHO Requirements.

    PubMed

    Davit, Barbara M; Kanfer, Isadore; Tsang, Yu Chung; Cardot, Jean-Michel

    2016-05-01

    The Biopharmaceutics Classification System (BCS), based on aqueous solubility and intestinal permeability, has enjoyed wide use since 1995 as a mechanism for waiving in vivo bioavailability and bioequivalence studies. In 2000, the US-FDA was the first regulatory agency to publish guidance for industry describing how to meet criteria for requesting a waiver of in vivo bioavailability and bioequivalence studies for highly soluble, highly permeable (BCS Class I) drugs. Subsequently, the World Health Organization (WHO) and European Medicines Agency (EMA) published guidelines recommending how to obtain BCS biowaivers for BCS Class III drugs (high solubility, low permeability), in addition to Class I drugs. In 2015, the US-FDA became better harmonized with the EMA and WHO following publication of two guidances for industry outlining criteria for obtaining BCS biowaivers for both Class I and Class III drugs. A detailed review and comparison of the BCS Class I and Class III criteria currently recommended by the US-FDA, EMA, and WHO revealed good convergence of the three agencies with respect to BCS biowaiver criteria. The comparison also suggested that, by applying the most conservative of the three jurisdictional approaches, it should be possible for a sponsor to design the same set of BCS biowaiver studies in preparing a submission for worldwide filing to satisfy US, European, and emerging market regulators. It is hoped that the availability of BCS Class I and Class III biowaivers in multiple jurisdictions will encourage more sponsors to request waivers of in vivo bioavailability/bioequivalence testing using the BCS approach. PMID:26943914

  12. Energy Materials Coordinating Committee (EMaCC) annual technical report, fiscal year 1984 with fiscal year 1985 data

    SciTech Connect

    1985-07-01

    The Department of Energy funded about 374 million dollars of materials science and technology activities in both fiscal years 1984 and 1985. These funds and the commensurate program management responsibilities resided in 21 DOE program offices, each of which has its own mission and responsibilities. The Energy Materials Coordinating Committee (EMaCC) provides a formal mechanism to insure coordinated planning and maximum programmatic effectiveness for the Department's 374 million dollar per year materials effort. The EMaCC reports to the Director of the Office of Energy Research who in turn has oversight responsibilities for proper coordination of the technical programs of the Department. In carrying out this responsibility, EMaCC hosts meetings, organizes working groups, and publishes an annual technical report. This report is mandated by the EMaCC Terms of Reference. Its purpose is to disseminate information on the DOE materials programs for more effective coordination. It describes the materials research programs of various offices and divisions within the Department for FY 1984, contains funding information for FYs 1984 and 1985, and summarizes EMaCC activities for FY 1985.

  13. Maintaining postreproductive health: A care pathway from the European Menopause and Andropause Society (EMAS).

    PubMed

    Armeni, Eleni; Lambrinoudaki, Irene; Ceausu, Iuliana; Depypere, Herman; Mueck, Alfred; Pérez-López, Faustino R; Schouw, Yvonne T van der; Senturk, Levent M; Simoncini, Tommaso; Stevenson, John C; Stute, Petra; Rees, Margaret

    2016-07-01

    This position statement from the European Menopause and Andropause Society (EMAS) provides a care pathway for the maintenance of women's health during and after the menopause. It is designed for use by all those involved in women's health. It covers assessment, screening for diseases in later life, treatment and follow-up. Strategies need to be optimised to maintain postreproductive health, in part because of increased longevity. They encompass optimising diet and lifestyle, menopausal hormone therapy and non-estrogen-based treatment options for climacteric symptoms and skeletal conservation, personalised to individual needs. PMID:27180162

  14. Mean corpuscular volume of control red blood cells determines the interpretation of eosin-5'-maleimide (EMA) test result in infants aged less than 6 months.

    PubMed

    Ciepiela, Olga; Adamowicz-Salach, Anna; Bystrzycka, Weronika; Łukasik, Jan; Kotuła, Iwona

    2015-08-01

    Eosin-5'-maleimide (EMA) binding test is a flow cytometric test used to detect hereditary spherocytosis (HS). To perform the test sample from patients, 5-6 reference samples of red blood are needed. Our aim was to investigate how the mean corpuscular volume (MCV) of red blood cells influences on the value of fluorescence of bounded EMA dye and how the choice of reference samples affects the test result. EMA test was performed in peripheral blood from 404 individuals, including 31 children suffering from HS. Mean fluorescence channel of EMA-RBCs was measured with Cytomics FC500 flow cytometer. Mean corpuscular volume of RBCs was assessed with LH750 Beckman Coulter. Statistical analysis was performed using Graph Pad Prism. The correlation Spearman coefficient between mean channel of fluorescence of EMA-RBCs and MCV was r = 0.39, p < 0.0001. Interpretation of EMA test depends on MCV of the reference samples. If reference blood samples have lower MCV than the patients MCV, EMA test result might be negative. Due to different MCV values of RBCs in infancy and ca. Three months later, EMA test in neonates might be interpreted falsely negative. Samples from children younger than 3 months old had EMA test result 86.1 ± 11.7 %, whereas same samples that analyzed 4.1 ± 2.1 later had results of 75.4 ± 4.5 %, p < 0.05. Mean fluorescence of EMA-bound RBC depends on RBC's volume. MCV of reference samples affects EMA test results; thus, we recommend selection of reference samples with MCV in range of ±2 fL compared to MCV of patient RBC's. PMID:25907377

  15. ORBITAL AND PHYSICAL PROPERTIES OF THE σ Ori Aa, Ab, B TRIPLE SYSTEM

    SciTech Connect

    Simón-Díaz, S.; Caballero, J. A.; Apellániz, J. Maíz; Lorenzo, J.; Negueruela, I.; Dorda, R.; Marco, A.; Schneider, F. R. N.; Barbá, R. H.; Montes, D.; Pellerin, A.; Sanchez-Bermudez, J.; Sota, A.

    2015-02-01

    We provide a complete characterization of the astrophysical properties of the σ Ori Aa, Ab, B hierarchical triple system and an improved set of orbital parameters for the highly eccentric σ Ori Aa, Ab spectroscopic binary. We compiled a spectroscopic data set comprising 90 high-resolution spectra covering a total time span of 1963 days. We applied the Lehman-Filhés method for a detailed orbital analysis of the radial velocity curves and performed a combined quantitative spectroscopic analysis of the σ Ori Aa, Ab, B system by means of the stellar atmosphere code FASTWIND. We used our own plus other available information on photometry and distance to the system for measuring the radii, luminosities, and spectroscopic masses of the three components. We also inferred evolutionary masses and stellar ages using the Bayesian code BONNSAI. The orbital analysis of the new radial velocity curves led to a very accurate orbital solution of the σ Ori Aa, Ab pair. We provided indirect arguments indicating that σ Ori B is a fast-rotating early B dwarf. The FASTWIND+BONNSAI analysis showed that the Aa, Ab pair contains the hottest and most massive components of the triple system while σ Ori B is a bit cooler and less massive. The derived stellar ages of the inner pair are intriguingly younger than the one widely accepted for the σ Orionis cluster, at 3 ± 1 Ma. The outcome of this study will be of key importance for a precise determination of the distance to the σ Orionis cluster, the interpretation of the strong X-ray emission detected for σ Ori Aa, Ab, B, and the investigation of the formation and evolution of multiple massive stellar systems and substellar objects.

  16. oriC-encoded instructions for the initiation of bacterial chromosome replication

    PubMed Central

    Wolański, Marcin; Donczew, Rafał; Zawilak-Pawlik, Anna; Zakrzewska-Czerwińska, Jolanta

    2014-01-01

    Replication of the bacterial chromosome initiates at a single origin of replication that is called oriC. This occurs via the concerted action of numerous proteins, including DnaA, which acts as an initiator. The origin sequences vary across species, but all bacterial oriCs contain the information necessary to guide assembly of the DnaA protein complex at oriC, triggering the unwinding of DNA and the beginning of replication. The requisite information is encoded in the unique arrangement of specific sequences called DnaA boxes, which form a framework for DnaA binding and assembly. Other crucial sequences of bacterial origin include DNA unwinding element (DUE, which designates the site at which oriC melts under the influence of DnaA) and binding sites for additional proteins that positively or negatively regulate the initiation process. In this review, we summarize our current knowledge and understanding of the information encoded in bacterial origins of chromosomal replication, particularly in the context of replication initiation and its regulation. We show that oriC encoded instructions allow not only for initiation but also for precise regulation of replication initiation and coordination of chromosomal replication with the cell cycle (also in response to environmental signals). We focus on Escherichia coli, and then expand our discussion to include several other microorganisms in which additional regulatory proteins have been recently shown to be involved in coordinating replication initiation to other cellular processes (e.g., Bacillus, Caulobacter, Helicobacter, Mycobacterium, and Streptomyces). We discuss diversity of bacterial oriC regions with the main focus on roles of individual DNA recognition sequences at oriC in binding the initiator and regulatory proteins as well as the overall impact of these proteins on the formation of initiation complex. PMID:25610430

  17. A profile of prognostic and molecular factors in European and Māori breast cancer patients

    PubMed Central

    2010-01-01

    Background New Zealand Māori have a poorer outcome from breast cancer than non-Māori, yet prognostic data are sparse. The objective of this study was to quantify levels of prognostic factors in a cohort of self-declared Māori and European breast cancer patients from Christchurch, New Zealand. Methods and Results Clinicopathological and survival data from 337 consecutive breast cancer patients (27 Māori, 310 European) were evaluated. Fewer tumours were high grade in Māori women than European women (p = 0.027). No significant ethnic differences were detected for node status, tumour type, tumour size, human epidermal growth factor receptor, oestrogen and progesterone receptor (ER/PR) status, or survival. In addition, tumour and serum samples from a sub-cohort of 14 Māori matched to 14 NZ European patients were analyzed by immunohistochemistry and enzyme linked immunosorbent assay for molecular prognostic factors. Significant correlations were detected between increased grade and increased levels of hypoxia inducible factor-1 (HIF-1α), glucose transporter-1 (GLUT-1), microvessel density (MVD) and cytokeratins CK5/6 (p < 0.05). High nodal status correlated with reduced carbonic anhydrase IX (CA-IX). Negative ER/PR status correlated with increased GLUT-1, CA-IX and MVD. Within the molecular factors, increased HIF-1α correlated with raised GLUT-1, MVD and CK5/6, and CK5/6 with GLUT-1 and MVD (p < 0.05). The small number of patients in this sub-cohort limited discrimination of ethnic differences. Conclusions In this Christchurch cohort of breast cancer patients, Māori women were no more likely than European women to have pathological or molecular factors predictive of poor prognosis. These data contrast with data from the North Island NZ, and suggest potential regional differences. PMID:20932344

  18. Interactive production planning and ergonomic assessment with Digital Human Models--introducing the Editor for Manual Work Activities (ema).

    PubMed

    Fritzsche, Lars; Leidholdt, Wolfgang; Bauer, Sebastian; Jäckel, Thomas; Moreno, Adrian

    2012-01-01

    The aging workforce is a risk factor for manufacturing industries that contain many jobs with high physical workloads. Thus, ergonomic risk factors have to be avoided in early phases of production planning. This paper introduces a new tool for simulating manual work activities with 3D human models, the so-called emaΦ. For the most part, the emaΦ software is based on a unique modular approach including a number of complex operations that were theoretically developed and empirically validated by means of motion capturing technologies. Using these modules for defining the digital work process enables the production planner to compile human simulations more accurately and much quicker compared to any of the existing modeling tools. Features of the emaΦ software implementation, such as ergonomic evaluation and MTM-time analyses, and the workflow for practical application are presented. PMID:22317401

  19. Using Neural Networks in Decision Making for a Reconfigurable Electro Mechanical Actuator (EMA)

    NASA Technical Reports Server (NTRS)

    Latino, Carl D.

    2001-01-01

    The objectives of this project were to demonstrate applicability and advantages of a neural network approach for evaluating the performance of an electro-mechanical actuator (EMA). The EMA in question was intended for the X-37 Advanced Technology Vehicle. It will have redundant components for safety and reliability. The neural networks for this application are to monitor the operation of the redundant electronics that control the actuator in real time and decide on the operating configuration. The system we proposed consists of the actuator, sensors, control circuitry and dedicated (embedded) processors. The main purpose of the study was to develop suitable hardware and neural network capable of allowing real time reconfiguration decisions to be made. This approach was to be compared to other methods such as fuzzy logic and knowledge based systems considered for the same application. Over the course of the project a more general objective was the identification of the other neural network applications and the education of interested NASA personnel on the topic of Neural Networks.

  20. Energy Materials Coordinating Committee (EMaCC), fiscal year 1985. Annual technical report

    SciTech Connect

    1986-05-01

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department's materials programs and to further the effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meeting/workshops on selected topics involving both DOE and major contractors. Four topical subcommittees on Structural Ceramics, Batteries and Fuel Cells, Radioactive Waste Containment, and Steel are established and are continuing their own program. The FY 1985 and FY 1986 meeting program is given. The EMaCC aids in obtaining materials-related inputs for both intra- and inter-agency compilations. Brief summaries of the materials research programs associated with each office and division are presented, including tables listing individual projects and the FY 1985 budgets for each. More details on the individual projects within the divisions and the specific tasks or subcontracts within the various projects are given in the paragraph descriptions.

  1. Radiometric Cross-calibration of FORMOSAT-2 RSI with Landsat-8 OLI Image

    NASA Astrophysics Data System (ADS)

    Liao, Tun-Yu; Lin, Tang-Huang; Lin, Meng-Yue; Liu, Gin-Rong; Liu, Chian-Yi; Hsu, Kuo-Hsien; Chen, Nai-Yu; Wu, An-Ming

    2015-04-01

    FORMOSAT-2 satellite (FS-2) was launched in May, 2004. It is the first Earth observation satellite operated by the National Space Organization (NSPO) of Taiwan. The main payload housed in FS-2 is Remote Sensing Instrument (RSI) with high spatial resolution. Landsat-8 (L-8) is an American Earth observing satellite launched in February 2013 quite recently. The main sensor on L-8 is Operational Land Imager (OLI). For any optical sensors, ensuring the accurate radiance observing is the most important issue for the applications to the scientific researches and environmental monitoring. Since RSI is operated more than 10 years, the optical characters may be altered. Therefore, the goal in this research project is to examine radiometric coefficients of FS-2 RSI sensor by means of in-flight cross-calibration using L-8 OLI image as a reference. For FS-2 RSI sensor, OLI is not only a new and well calibrated sensor but also use the similar spectral bands and bandwidth which can provide a credible data for calibrating RSI. The desert areas are selected for the cross-calibration in this study, including Sahara desert in Africa and Sonoran desert in America. Those sites are usually used in other papers as a satellite sensor calibration site. The radiative transfer code, Second Simulation of a Satellite Signal in the Solar Spectrum (6S) is employed to drive land surface reflectance and the radiance RSI observed on the top of atmosphere. Eventually, the physical gains of RSI can be figured based on the relationship between observed radiance and the digital number. The results indicate that the changes of physical gains from the counter parts of pre-flight can reach in 10% in most spectral bands of RSI. Keywords: FORMOSAT-2 RSI, Landsat-8 OLI, In-flight radiometric calibration, Cross-calibration, Physical gain

  2. Radiometric calibration and stability of the Landsat-8 Operational Land Imager (OLI)

    NASA Astrophysics Data System (ADS)

    Markham, Brian L.; Barsi, Julia A.; Kaita, Edward; Ong, Lawrence; Morfitt, Ron A.; Haque, Md. O.

    2015-09-01

    Landsat-8 and its two Earth imaging sensors, the Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS) have been operating on-orbit for 2 1/2 years. The OLI radiometric calibration, which is monitored using on-board lamps, on-board solar diffusers, the moon and vicarious calibration techniques has been stable to within 1% over this period of time. The Coastal Aerosol band, band 1, shows the largest change at about 1% over the period; all other bands have shown no significant trend. OLI bands 1- 4 show small discontinuities in response (+0.1% to 0.2%) beginning about 7 months after launch and continuing for about 1 month associated with a power cycling of the instrument, though the origin of the recovery is unclear. To date these small changes have not been compensated for, but this will change with a reprocessing campaign that is currently scheduled for Fall 2015. The calibration parameter files (each typically covering a 3 month period) will be updated for these observed gain changes. A fitted response to an adjusted average of the lamps, solar and lunar results will represent the trend, sampled at the rate of one value per CPF.

  3. Design of non-isomorphic symmetric descendants of the Miura-ori

    NASA Astrophysics Data System (ADS)

    Sareh, Pooya; Guest, Simon D.

    2015-08-01

    The Miura fold pattern, or the Miura-ori, is a flat-foldable origami pattern with various applications in engineering and architecture. In addition to free-form variations, scholars have proposed a number of symmetric derivatives for this classic fold pattern over recent years. In a previous work, the authors of this paper studied isomorphic variations on the Miura-ori which led to the development of an ‘isomorphic family’ for this fold pattern. In this paper, we study non-isomorphic variations on the Miura-ori in order to develop a ‘non-isomorphic family’ for this pattern. Again we start with the Miura-ori, but reduce the symmetry by migrating from the original symmetry group to its subgroups, which may also include the enlargement of its unit cell. We systematically design and classify the non-isomorphic symmetric descendants of the Miura-ori which are either globally planar, or globally curved, flat-foldable tessellations.

  4. A Star-forming Ring around κ Ori 250 pc from the Sun

    NASA Astrophysics Data System (ADS)

    Pillitteri, I.; Wolk, S. J.; Megeath, S. T.

    2016-04-01

    X-rays are a powerful probe of activity in early stages of star formation. They allow us to identify young stars even after they have lost the IR signatures of circumstellar disks and provide constraints on their distance. Here, we report on XMM-Newton observations that detect 121 young stellar objects (YSOs) in two fields between L1641 S and κ Ori. These observations extend the Survey of Orion A with XMM and Spitzer (SOXS). The YSOs are contained in a ring of gas and dust apparent at millimeter wavelengths, and in far-IR and near-IR surveys. The X-ray luminosity function of the YSOs detected in the two fields indicates a distance of 250-280 pc, much closer than the Orion A cloud and similar to distance estimates of κ Ori. We propose that the ring is a 5-8 pc diameter shell that has been swept up by κ Ori. This ring contains several groups of stars detected by Spitzer and WISE including one surrounding the Herbig Ae/Be stars V1818 Ori. In this interpretation, the κ Ori ring is one of several shells swept up by massive stars within the Orion Eridanus Superbubble and is unrelated to the southern portion of Orion A/L1641 S.

  5. IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli.

    PubMed

    Grimwade, J E; Ryan, V T; Leonard, A C

    2000-02-01

    In Escherichia coli, initiation of chromosome replication requires that DnaA binds to R boxes (9-mer repeats) in oriC, the unique chromosomal replication origin. At the time of initiation, integration host factor (IHF) also binds to a specific site in oriC. IHF stimulates open complex formation by DnaA on supercoiled oriC in cell-free replication systems, but it is unclear whether this stimulation involves specific changes in the oriC nucleoprotein complex. Using dimethylsulphate (DMS) footprinting on supercoiled oriC plasmids, we observed that IHF redistributed prebound DnaA, stimulating binding to sites R2, R3 and R5(M), as well as to three previously unidentified non-R sites with consensus sequence (A/T)G(G/C) (A/T)N(G/C)G(A/T)(A/T)(T/C)A. Redistribution was dependent on IHF binding to its cognate site and also required a functional R4 box. By reducing the DnaA level required to separate DNA strands and trigger initiation of DNA replication at each origin, IHF eliminates competition between strong and weak sites for free DnaA and enhances the precision of initiation synchrony during the cell cycle. PMID:10692160

  6. Photometric activity of UX Ori stars and related objects in the near infrared and visual. BF Ori, CQ Tau, WW Vul, and SV Cep

    NASA Astrophysics Data System (ADS)

    Shenavrin, V. I.; Grinin, V. P.; Rostopchina-Shakhovskaja, A. N.; Demidova, T. V.; Shakhovskoi, D. N.

    2012-05-01

    We have analyzed the activity of four UX Ori stars in the near-IR ( JHKL) and visual ( V) using the results of long-term photometric observations. For comparison, we also obtained IR ( JHKLM) photometric observations of two visually quiet young stars of close spectral types (AB Aur and HD 190073). For the photometrically most active UX Ori stars BF Ori, CQ Tau, and WW Vul, the Algol-like declines of brightness in the visual, which are due to sporadic enhancements of the circumstellar extinction, are also observed (with decreasing amplitude) in the IR bands. A strict correlation between the V and J brightness variations is observed for all the stars except for SV Cep. For some of the UX Ori stars, a strong correlation between the visual and IR activity is observed up to L, where the main contribution to the emission is made by circumstellar dust. In the case of SV Cep, the visual variability is not correlated with the variability of the IR fluxes. On one occasion, a clear anti-correlation was even observed: a shallow, but prolonged decrease of the visual brightness was accompanied by an increase in the IR fluxes. This indicates that circumstellar clouds themselves can become powerful sources of IR emission. Our results provide evidence that the photometric activity of UX Ori stars is a consequence of instability of the deepest layers of their gas-dust accretion disks. In some cases (SV Cep), fluctuations of the density in this region are global, in the sense that they occur along a significant part of the circle marking the inner boundary of the dust disk. It is interesting that AB Aur, which is the quietest in the visual, appeared to be the most active in the IR. In contrast to UX Ori stars, the amplitude of its brightness variations increases from the J to the M band. It follows from analysis of the IR colors of this star that their variability cannot be described by models in which the variable IR emission has a temperature close to the sublimation temperature of

  7. Mechanistic analysis of local ori melting and helicase assembly by the papillomavirus E1 protein

    PubMed Central

    Schuck, Stephen; Stenlund, Arne

    2011-01-01

    Summary Preparation of DNA templates for replication requires opening of the duplex to expose single stranded (ss) DNA. The locally melted DNA is required for replicative DNA helicases to initiate unwinding. How local melting is generated in eukaryotic replicons is unknown, but initiator proteins from a handful of eukaryotic viruses can perform this function. Here we dissect the local melting process carried out by the papillomavirus E1 protein. We characterize the melting process kinetically and identify mutations in the E1 helicase and in the ori that arrest the local melting process. We show that a subset of these mutants have specific defects for melting of the center of the ori containing the binding sites for E1 and demonstrate that these mutants fail to untwist the ori DNA. This newfound understanding of how E1 generates local melting suggests possible mechanisms for local melting in other replicons. PMID:21884978

  8. Electromagnetic acoustic source (EMAS) for generating shock waves and cavitation in mercury

    NASA Astrophysics Data System (ADS)

    Wang, Qi

    In the Spallation Neutron Source (SNS) at Oak Ridge National Laboratory a vessel of liquid mercury is subjected to a proton beam. The resulting nuclear interaction produces neutrons that can be used for materials research, among other things, but also launches acoustic waves with pressures in excess of 10 MPa. The acoustic waves have high enough tensile stress to generate cavitation in the mercury which results in erosion to the steel walls of the vessel. In order to study the cavitation erosion and develop mitigation schemes it would be convenient to have a way of generating similar pressures and cavitation in mercury, without the radiation concerns associated with a proton beam. Here an electromagnetic acoustic source (EMAS) has been developed which consisted of a coil placed close to a metal plate which is in turn is in contact with a fluid. The source is driven by discharging a capacitor through the coil and results in a repulsive force on the plate launching acoustic waves in the fluid. A theoretical model is presented to predict the acoustic field from the EMAS and compares favorably with measurements made in water. The pressure from the EMAS was reported as a function of capacitance, charging voltage, number of coils, mylar thickness, and properties of the plates. The properties that resulted in the highest pressure were employed for experiments in mercury and a maximum pressure recorded was 7.1 MPa. Cavitation was assessed in water and mercury by high speed camera and by detecting acoustic emissions. Bubble clouds with lifetimes on the order of 100 µs were observed in water and on the order of 600 µs in mercury. Based on acoustic emissions the bubble radius in mercury was estimated to be 0.98 mm. Experiments to produce damage to a stainless steel plate in mercury resulted in a minimal effect after 2000 shock waves at a rate of 0.33 Hz - likely because the pressure amplitude was not high enough. In order to replicate the conditions in the SNS it is

  9. Physical-mechanical properties of Bis-EMA based root canal sealer with different fillers addition

    PubMed Central

    de Souza, Marcela Oliveira; Branco Leitune, Vicente Castelo; Bohn, Priscila Veit; Werner Samuel, Susana Maria; Collares, Fabrício Mezzomo

    2015-01-01

    Aim: To evaluate influence of three different filler particles on an experimental Bisphenol A ethoxylated dimethacrylate (Bis-EMA) based root filling material. Materials and Methods: Resin-based endodontic sealers were produced using Bis-EMA, camphorquinone, ethyl 4-dimethylaminobenzoate (EDAB), N, N-dihydroxyethyl-p-toluidine (DHEPT), butylated hydroxytoluene (BHT), and benzoyl peroxide. The experimental groups were formulated adding 10, 20, 30, 40, and 50% of calcium tungstate (CaWO4), ytterbium trifluoride(YbF3), and tantalum oxide(Ta2O5). Flow, thickness, and radiopacity tests were conducted in accordance with ISO 6876. Sorption and solubility (SL) tests were conducted in accordance with ISO 4049, pH was measured with a pH meter, and degree of conversion (DC) was evaluated with Fourier transform infrared spectroscopy (FTIR). For radiopacity, two-way analysis of variance (ANOVA) and Tukey's multiple comparison test was performed. For DC analysis, one-way ANOVA and Tukey's multiple comparison test was performed. All statistical analyses were performed with a significance level of 5%. Results: All groups showed lower flow with increased filler concentration. All groups showed film thickness values lower than 50μm, as ISO recommends, except CaWO450% group (76.7μm). pH values varied from 5.95 (± 0.07) in YbF340% group to 6.90 (± 0.07) in Ta2O540% group. In the radiopacity test, YbF330%, Ta2O540%, and Ta2O550% groups showed no statistical significant difference to 3mmAl. Ta2O5 and YbF3 groups in 10, 20, and 30% concentrations presented sorption and SL values as ISOrecommendation. Addition ofTa2O5 and CaWO4 decreased DC after 14 days. YbF3 addition showed no difference in DC from control group. Conclusion: YbF3 filler addition promoted higher properties compared to CaWO4 and Ta2O5 on Bis-EMA based root canal sealer. PMID:26069410

  10. Pounamu: E Hine: access to contraception for indigenous Mãori teenage mothers.

    PubMed

    Lawton, Beverley; Makowharemahihi, Charrissa; Cram, Fiona; Robson, Bridget; Ngata, Tina

    2016-03-01

    INTRODUCTION Timely and equitable access to contraception enables teenage mothers to make informed choices about their sexual and reproductive health. This study aimed to identify barriers and facilitators to contraception for Māori teenagers who become mothers. METHODS 'E Hine' is a longitudinal qualitative Kaupapa Māori (by Māori for Māori) study involving Māori women (aged 14-19 years), following them through pregnancy (n = 44) and the birth of their babies until their babies' first birthdays (n = 41). This analysis focusses on contraception access pre-and post-pregnancy. FINDINGS Pre-pregnancy most participants accessed contraception or advice. Contraception use was compromised by a lack of information, negative side effects, and limited follow up. All reported their subsequent pregnancies as unplanned. Participants gave considerable thought to post-pregnancy contraception. Despite this many experienced clinical and service delays, financial barriers, and negative contraceptive side effects. There was little focus on contraception initiation and a lack of integrated care between midwives and other primary care services, leaving many participants without timely effective contraception. The system worked well when there was a contraception plan that included navigation, free access, and provision of contraception. CONCLUSION The majority of participants actively sought contraception pre- and post-conception. Despite a publicly funded system, a lack of health sector integration resulted in multiple missed opportunities to meet the needs of these teenagers for effective contraception. Health service funding formulas should define the goal as initiation of contraception rather than advice and provide funding to improve timely access to long acting reversible contraception. KEYWORDS Indigenous teenage pregnancy; contraception; barriers to contraception; Māori mothers. PMID:27477375

  11. An EMA Analysis of the Effect of Increasing Word Length on Consonant Production in Apraxia of Speech: A Case Study

    ERIC Educational Resources Information Center

    Bartle, Carly J.; Goozee, Justine V.; Murdoch, Bruce E.

    2007-01-01

    The effect of increasing word length on the articulatory dynamics (i.e. duration, distance, maximum acceleration, maximum deceleration, and maximum velocity) of consonant production in acquired apraxia of speech was investigated using electromagnetic articulography (EMA). Tongue-tip and tongue-back movement of one apraxic patient was recorded…

  12. Looking Māori Predicts Decreased Rates of Home Ownership: Institutional Racism in Housing Based on Perceived Appearance

    PubMed Central

    2015-01-01

    This study examined differences in rates of home ownership among Māori (the indigenous peoples of New Zealand). We identified systematic factors that predicted why some Māori were more likely to own their own home (partially or fully) relative to other Māori. Data were drawn from a large national postal sample of 561 self-identified Māori collected as part of the New Zealand Attitudes and Values Study. As predicted, our analyses indicated that self-reported appearance as Māori, or the extent to which people thought they personally displayed features which visibly identified them as Māori to others, significantly predicted decreased rates of home ownership. This association held when adjusting for numerous demographic covariates, such as education, level of deprivation of the immediate area, household income, age, relationship status, region of residence, and so forth. Our analyses suggest there is, or at least has been in the recent past, institutional racism against Māori in New Zealand’s home lending industry based on merely appearing more Māori. PMID:25738961

  13. 78 FR 49507 - OriGen Energy LLC ; Supplemental Notice That Initial Market-Based Rate Filing Includes Request...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-14

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission OriGen Energy LLC ; Supplemental Notice That Initial Market-Based Rate...-referenced proceeding of OriGen Energy LLC's application for market-based rate authority, with...

  14. Looking Māori predicts decreased rates of home ownership: institutional racism in housing based on perceived appearance.

    PubMed

    Houkamau, Carla A; Sibley, Chris G

    2015-01-01

    This study examined differences in rates of home ownership among Māori (the indigenous peoples of New Zealand). We identified systematic factors that predicted why some Māori were more likely to own their own home (partially or fully) relative to other Māori. Data were drawn from a large national postal sample of 561 self-identified Māori collected as part of the New Zealand Attitudes and Values Study. As predicted, our analyses indicated that self-reported appearance as Māori, or the extent to which people thought they personally displayed features which visibly identified them as Māori to others, significantly predicted decreased rates of home ownership. This association held when adjusting for numerous demographic covariates, such as education, level of deprivation of the immediate area, household income, age, relationship status, region of residence, and so forth. Our analyses suggest there is, or at least has been in the recent past, institutional racism against Māori in New Zealand's home lending industry based on merely appearing more Māori. PMID:25738961

  15. A model of care for healthy menopause and ageing: EMAS position statement.

    PubMed

    Stute, Petra; Ceausu, Iuliana; Depypere, Herman; Lambrinoudaki, Irene; Mueck, Alfred; Pérez-López, Faustino R; van der Schouw, Yvonne T; Senturk, Levent M; Simoncini, Tommaso; Stevenson, John C; Rees, Margaret

    2016-10-01

    Worldwide, the number of menopausal women is increasing. They present with complex medical issues that lie beyond the traditional scope of gynaecologists and general practitioners (GPs). The European Menopause and Andropause Society (EMAS) therefore provides a holistic model of care for healthy menopause (HM). The HM healthcare model's core consists of a lead clinician, specialist nurse(s) and the woman herself, supported by an interdisciplinary network of medical experts and providers of alternative/complementary medicine. As HM specialist teams are scarce in Europe, they are also responsible for structuring and optimizing processes in primary care (general gynaecologists and GPs) and secondary care (HM specialists). Activities for accreditation of the subspecialty Women's Health are encouraged. PMID:27621230

  16. PREFACE: EMAS 2013 Workshop: 13th European Workshop on Modern Developments and Applications in Microbeam Analysis

    NASA Astrophysics Data System (ADS)

    Llovet, Xavier, Dr; Matthews, Mr Michael B.; Brisset, François, Dr; Guimarães, Fernanda, Dr; Vieira, Professor Joaquim M., Dr

    2014-03-01

    This volume of the IOP Conference Series: Materials Science and Engineering contains papers from the 13th Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis which took place from the 12th to the 16th of May 2013 in the Centro de Congressos do Alfândega, Porto, Portugal. The primary aim of this series of workshops is to assess the state-of-the-art and reliability of microbeam analysis techniques. The workshops also provide a forum where students and young scientists starting out on a career in microbeam analysis can meet and discuss with the established experts. The workshops have a very specific format comprising invited plenary lectures by internationally recognized experts, poster presentations by the participants and round table discussions on the key topics led by specialists in the field. This workshop was organized in collaboration with LNEG - Laboratório Nacional de Energia e Geologia and SPMICROS - Sociedade Portuguesa de Microscopia. The technical programme included the following topics: electron probe microanalysis, future technologies, electron backscatter diffraction (EBSD), particle analysis, and applications. As at previous workshops there was also a special oral session for young scientists. The best presentation by a young scientist was awarded with an invitation to attend the 2014 Microscopy and Microanalysis meeting at Hartford, Connecticut. The prize went to Shirin Kaboli, of the Department of Metals and Materials Engineering of McGill University (Montréal, Canada), for her talk entitled ''Plastic deformation studies with electron channelling contrast imaging and electron backscattered diffraction''. The continuing relevance of the EMAS workshops and the high regard in which they are held internationally can be seen from the fact that 74 posters from 21 countries were on display at the meeting and that the participants came from as far away as Japan, Canada and the USA. A

  17. PREFACE: EMAS 2011: 12th European Workshop on Modern Developments in Microbeam Analysis

    NASA Astrophysics Data System (ADS)

    Brisset, François; Dugne, Olivier; Robaut, Florence; Lábár, János L.; Walker, Clive T.

    2012-03-01

    This volume of IOP Conference Series: Materials Science and Engineering contains papers from the 12th Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis, which took place from the 15-19 May 2011 in the Angers Congress Centre, Angers, France. The primary aim of this series of workshops is to assess the state-of-the-art and reliability of microbeam analysis techniques. The workshops also provide a forum where students and young scientists starting out on a career in microbeam analysis can meet and discuss with the established experts. The workshops have a very specific format comprising invited plenary lectures by internationally recognized experts, poster presentations by the participants and round table discussions on the key topics led by specialists in the field. This workshop was organized in collaboration with GN-MEBA - Groupement National de Microscopie Electronique à Balayage et de microAnalysis, France. The technical programme included the following topics: the limits of EPMA, new techniques, developments and concepts in microanalysis, microanalysis in the SEM, and new and less common applications of micro- and nanoanalysis. As at previous workshops there was also a special oral session for young scientists. The best presentation by a young scientist was awarded with an invitation to attend the 2012 Microscopy and Microanalysis meeting at Phoenix, Arizona. The prize went to Pierre Burdet, of the Federal Institute of Technology of Lausanne (EPFL), for his talk entitled '3D EDS microanalysis by FIB-SEM: enhancement of elemental quantification'. The continuing relevance of the EMAS workshops and the high regard in which they are held internationally can be seen from the fact that 74 posters from 18 countries were on display at the meeting, and that the participants came from as far away as Japan, Canada and the USA. A selection of participants with posters were invited to give a short oral

  18. Robust flood frequency analysis: Performance of EMA with multiple Grubbs-Beck outlier tests

    NASA Astrophysics Data System (ADS)

    Lamontagne, J. R.; Stedinger, J. R.; Yu, Xin; Whealton, C. A.; Xu, Ziyao

    2016-04-01

    Flood frequency analysis generally involves the use of simple parametric probability distributions to smooth and extrapolate the information provided by short flood records to estimate extreme flood flow quantiles. Parametric probability distributions can have difficulty simultaneously fitting both the largest and smallest floods. A danger is that the smallest observations in a record can distort the exceedance probabilities assigned to the large floods of interest. The identification and treatment of such Potentially Influential Low Floods (PILFs) frees a fitting algorithm to describe the distribution of the larger observations. This can allow parametric flood frequency analysis to be both efficient, and also robust to deviations from the proposed probability model's lower tail. Historically, PILF identification involved subjective judgement. We propose a new multiple Grubbs-Beck outlier test (MGBT) for objective PILF identification. MGBT PILF identification rates (akin to Type I errors) are reported for the lognormal (LN) distribution and the log-Pearson Type III (LP3) distribution with a variety of skew coefficients. MGBT PILF identification generally matched subjective identification from a recent California flood frequency study. Monte Carlo results show that censoring of PILFs identified by the MGBT algorithm improves the extreme quantile estimator efficiency of the expected moments algorithm (EMA) for negatively skewed LP3 distributions and has little effect for zero or positive skews; simultaneously it protects against deviations from the LP3 in the lower tail, as illustrated by distorted LN examples. Thus, MGBT generally makes flood frequency analysis based on the LP3 distribution with EMA both more accurate and more robust.

  19. Marketing Regulatory Oversight of Advanced Therapy Medicinal Products (ATMPs) in Europe: The EMA/CAT Perspective.

    PubMed

    Salmikangas, Paula; Schuessler-Lenz, Martina; Ruiz, Sol; Celis, Patrick; Reischl, Ilona; Menezes-Ferreira, Margarida; Flory, Egbert; Renner, Matthias; Ferry, Nicolas

    2015-01-01

    With the release of Regulation 1394/2007, a new framework for gene and cell therapy medicinal products and tissue-engineered products was established in the European Union. For all three product classes, called advanced therapy medicinal products, a centralised marketing authorisation became mandatory. The European Medicines Agency (EMA) together with its Committee for Advanced Therapies, Committee for Human Medicinal Products and the network of national agencies is responsible for scientific evaluation of the marketing authorisation applications. For a new application, data and information relating to manufacturing processes and quality control of the active substance and the final product have to be submitted for evaluation together with data from non-clinical and clinical safety and efficacy studies. Technical requirements for ATMPs are defined in the legislation, and guidance for different products is available through several EMA/CAT guidelines. Due to the diversity of ATMPs, a tailored approach for regulating these products is considered necessary. Thus, a risk-based approach has been introduced for ATMPs allowing flexibility for the regulatory requirements. Since the regulatory framework for ATMPs was established, five products have been licenced in the European Union. However, the pipeline of new ATMPs is much bigger, as seen from the significant numbers of different products discussed by the CAT in scientific advice and classification procedures. In 2013, a public consultation on the ATMP Regulation was conducted by the European Commission, and the results were published in 2014. The report proposes several improvements for the current framework and established procedures for the regulation of ATMPs. PMID:26374215

  20. Photometric activity of UX orionis stars and related objects in the near infrared and optical: CO Ori, RR Tau, UX Ori, and VV Ser

    NASA Astrophysics Data System (ADS)

    Shenavrin, V. I.; Rostopchina-Shakhovskaya, A. N.; Grinin, V. P.; Demidova, T. V.; Shakhovskoi, D. N.; Belan, S. P.

    2016-08-01

    This paper continues a study of the photometric activity of UX Ori stars in the optical and near-infrared ( JHKLM bands) initiated in 2000. For comparison, the list of program stars contains two Herbig Ae stars that are photometrically quiet in the optical: MWC480 andHD179218. Fadings ofUXOri stars in the optical ( V band) due to sporadic increases of the circumstellar extinction are also observed in the infrared (IR), but with decreasing amplitude. Two stars, RR Tau and UX Ori, displayed photometric events when V -band fadings were accompanied by an increase in IR fluxes. Among the two Herbig Ae stars that are photometrically quiet in the optical, MWC 480 proved to be fairly active in the IR. Unlike the UX Ori stars, the variation amplitude of MWC 480 increases from the J band to the M band. In the course of the observations, no deep fadings in the IR bands were detected. This indicates that eclipses of the program stars have a local nature, and are due to extinction variations in the innermost regions of the circumstellar disks. The results presented testify to an important role of the alignment of the circumstellar disks relative to the direction towards the observer in determining the observed IR variability of young stars.

  1. Cloning and characterization of oriL2, a large palindromic DNA replication origin of herpes simplex virus type 2.

    PubMed Central

    Lockshon, D; Galloway, D A

    1986-01-01

    An origin of replication within the long unique sequence of herpes simplex virus type 2 designated oriL2 has been identified in a position homologous to its type 1 counterpart, oriL1, between map coordinates 0.398 and 0.413. The difficulties encountered in previous attempts to clone both oriL2 and oriL1 in an undeleted form were surmounted by minimizing the growth of the host Escherichia coli, using a recBC sbcB E. coli host, and purifying the full-length plasmid from delected forms by using a novel method which exploits the ability of a palindrome-containing plasmid to adopt a cruciform conformation, thereby decreasing its supercoiling. In a previously developed assay for functional origin activity, oriL2 was localized to a 241-base-pair ApaI-SstII fragment. DNA sequence analysis revealed a 136-base pair, almost perfect palindrome. Comparison with oriL1 showed a very high degree of conservation: the two origins differ in only 16 of the 144-base-pair oriL1 palindromic region. Most significantly, the differences between oriL1 and oriL2 mainly occur in pairs so as to generally preserve the potential for intrastrand base pairing. The central region of oriL2 is homologous with the shorter palindromic structures detected in origins located within the repetitive sequences of the short component of herpes simplex virus type 1 or 2. Images PMID:3009865

  2. Observing the Circumstellar Environment of the Eruptive FUor/EXor Protostar V1647 Ori with ALMA

    NASA Astrophysics Data System (ADS)

    Principe, David; Cieza, Lucas A.; Zhu, Zhaohuan; Tobin, John J.; Prieto, Jose Luis

    2016-01-01

    Fu Ori (FUor) and EXor objects represent a short-lived stage of protostellar evolution characterized by intense mass accretion events which cause extreme variability in the form of outbursts. While it is well demonstrated that these objects exhibit sudden outbursts (ΔV~2-6), the mechanism causing such variability is not well understood. High spatial and spectral resolution observations of the circumstellar environment of these objects are essential to distinguish between different outbursting mechanisms. We present ALMA observations of the FUor/EXor object V1647 Ori as part of an ALMA campaign, which has observed a combined eight FUor and EXor type objects. Deeply embedded in the dark cloud LDN 1630 (L1630), V1647 Ori is one of a few FUor/EXor objects to have been extensively studied at multiple wavelengths before, during and after an outburst. We present preliminary results derived from ALMA 12CO, 13CO, C18O and continuum observations of the circumstellar environment of V1647 Ori. By measuring gas/dust masses and gas kinematics of the circumstellar disk, we investigate the potential mechanisms producing variability in these eruptive protostars during an essential, yet rarely observed, stage of pre-main sequence stellar evolution.

  3. An improved method for oriT-directed cloning and functionalization of large bacterial genomic regions.

    PubMed

    Kvitko, Brian H; McMillan, Ian A; Schweizer, Herbert P

    2013-08-01

    We have made significant improvements to a broad-host-range system for the cloning and manipulation of large bacterial genomic regions based on site-specific recombination between directly repeated oriT sites during conjugation. Using two suicide capture vectors carrying flanking homology regions, oriT sites are recombined on either side of the target region. Using a broad-host-range conjugation helper plasmid, the region between the oriT sites is conjugated into an Escherichia coli recipient strain, where it is circularized and maintained as a chimeric mini-F vector. The cloned target region is functionalized in multiple ways to accommodate downstream manipulation. The target region is flanked with Gateway attB sites for recombination into other vectors and by rare 18-bp I-SceI restriction sites for subcloning. The Tn7-functionalized target can also be inserted at a naturally occurring chromosomal attTn7 site(s) or maintained as a broad-host-range plasmid for complementation or heterologous expression studies. We have used the oriTn7 capture technique to clone and complement Burkholderia pseudomallei genomic regions up to 140 kb in size and have created isogenic Burkholderia strains with various combinations of genomic islands. We believe this system will greatly aid the cloning and genetic analysis of genomic islands, biosynthetic gene clusters, and large open reading frames. PMID:23747708

  4. 42 CFR 93.217 - Office of Research Integrity or ORI.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 42 Public Health 1 2014-10-01 2014-10-01 false Office of Research Integrity or ORI. 93.217 Section 93.217 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES HEALTH ASSESSMENTS AND HEALTH EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Definitions...

  5. 42 CFR 93.403 - ORI review of research misconduct proceedings.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 42 Public Health 1 2014-10-01 2014-10-01 false ORI review of research misconduct proceedings. 93.403 Section 93.403 Public Health PUBLIC HEALTH SERVICE, DEPARTMENT OF HEALTH AND HUMAN SERVICES HEALTH ASSESSMENTS AND HEALTH EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH...

  6. Swift and SMARTS observations of the 2015 outburst of V1118 Ori

    NASA Astrophysics Data System (ADS)

    Audard, Marc; Hamaguchi, Kenji; Kastner, Joel; Grosso, Nicolas; Walter, Frederick M.

    2016-01-01

    Swift observed V1118 Ori on 2015 Dec 11-12 (5.17 ksec, obs ID 00034203001) and on Dec 16 (2.45ks, obs ID 00034203002) during the latest mass accretion outburst reported by Lorenzetti et al. (ATel #8100).

  7. An Improved Method for oriT-Directed Cloning and Functionalization of Large Bacterial Genomic Regions

    PubMed Central

    Kvitko, Brian H.; McMillan, Ian A.

    2013-01-01

    We have made significant improvements to a broad-host-range system for the cloning and manipulation of large bacterial genomic regions based on site-specific recombination between directly repeated oriT sites during conjugation. Using two suicide capture vectors carrying flanking homology regions, oriT sites are recombined on either side of the target region. Using a broad-host-range conjugation helper plasmid, the region between the oriT sites is conjugated into an Escherichia coli recipient strain, where it is circularized and maintained as a chimeric mini-F vector. The cloned target region is functionalized in multiple ways to accommodate downstream manipulation. The target region is flanked with Gateway attB sites for recombination into other vectors and by rare 18-bp I-SceI restriction sites for subcloning. The Tn7-functionalized target can also be inserted at a naturally occurring chromosomal attTn7 site(s) or maintained as a broad-host-range plasmid for complementation or heterologous expression studies. We have used the oriTn7 capture technique to clone and complement Burkholderia pseudomallei genomic regions up to 140 kb in size and have created isogenic Burkholderia strains with various combinations of genomic islands. We believe this system will greatly aid the cloning and genetic analysis of genomic islands, biosynthetic gene clusters, and large open reading frames. PMID:23747708

  8. An effective modified water extraction method for Landsat-8 OLI imagery of mountainous plateau regions

    NASA Astrophysics Data System (ADS)

    Gao, H.; Wang, L.; Jing, L.; Xu, J.

    2016-04-01

    Water body extraction from remote sensing imagery is an efficient way to investigate and monitor water resources. In the study area of this research, a mountainous plateau near Kashgar, China, sparse vegetation and seasonal rivers affect water body extraction. In order to extract water bodies, a modified water body extraction method is proposed in this paper and tested using Landsat-8 OLI imagery. Following this method, binary images are first generated using a classification, a Tasseled Cap transform, and a normalized difference water index, respectively, and then combined to yield a mask. Next, water bodies are delineated by masking the Landsat-8 OLI imagery and then refined by eliminating false areas using a supervised classification. It is demonstrated from the resulting water body maps that terrain related shadows in imagery were effectively eliminated and river tributaries and artificial ditches were precisely delineated, with accuracy up to 94%. Compared with several current water body extraction methods, the modified method yielded water body maps with better visualization and slightly improved accuracy.

  9. Landsat-8 Operational Land Imager (OLI) radiometric performance on-orbit

    USGS Publications Warehouse

    Morfitt, Ron; Barsi, Julia A.; Levy, Raviv; Markham, Brian L.; Micijevic, Esad; Ong, Lawrence; Scaramuzza, Pat; Vanderwerff, Kelly

    2015-01-01

    Expectations of the Operational Land Imager (OLI) radiometric performance onboard Landsat-8 have been met or exceeded. The calibration activities that occurred prior to launch provided calibration parameters that enabled ground processing to produce imagery that met most requirements when data were transmitted to the ground. Since launch, calibration updates have improved the image quality even more, so that all requirements are met. These updates range from detector gain coefficients to reduce striping and banding to alignment parameters to improve the geometric accuracy. This paper concentrates on the on-orbit radiometric performance of the OLI, excepting the radiometric calibration performance. Topics discussed in this paper include: signal-to-noise ratios that are an order of magnitude higher than previous Landsat missions; radiometric uniformity that shows little residual banding and striping, and continues to improve; a dynamic range that limits saturation to extremely high radiance levels; extremely stable detectors; slight nonlinearity that is corrected in ground processing; detectors that are stable and 100% operable; and few image artifacts.

  10. Assessing the potential of Landsat 8 OLI for retrieving salinity in the hypersaline Arabian Gulf

    NASA Astrophysics Data System (ADS)

    Zhao, Jun; Temimi, Marouane

    2016-04-01

    The Arabian Gulf, located in an arid region in the Middle East, has high salinity that can exceed 43 practical salinity units (psu) due to its special conditions, such as high evaporation, low precipitation, and desalination discharge. In this study, a regional algorithm was developed to retrieve salinity using in situ measurements conducted between June 2013 and November 2014 along the western coast of Abu Dhabi, United Arab Emirates (UAE). A multivariate linear regression model using the visible bands of Operational Land Imager (OLI) was proposed and indicated good performance with a determination coefficient (R2) of 0.7. The algorithm was then applied to an OLI scene, which revealed the spatial distribution of salinity over the study area. The findings are favorable for better interpretation of the complex water mass exchange between the Arabian Gulf and the Sea of Oman through the Strait of Hormuz, validating salinity from numerical models, studying the effects of anthropogenic activities and climate change on ecosystem in the hypersaline Arabian Gulf, etc.

  11. Comparative microanatomy of the orbicularis oris muscle between chimpanzees and humans: evolutionary divergence of lip function

    PubMed Central

    Rogers, Carolyn R; Mooney, Mark P; Smith, Timothy D; Weinberg, Seth M; Waller, Bridget M; Parr, Lisa A; Docherty, Beth A; Bonar, Christopher J; Reinholt, Lauren E; Deleyiannis, Frederic W-B; Siegel, Michael I; Marazita, Mary L; Burrows, Anne M

    2009-01-01

    The orbicularis oris muscle plays a role in the production of primate facial expressions and vocalizations, nutrient intake, and in some non-human primates it is used as a prehensile, manipulative tool. As the chimpanzee (Pan troglodytes) is the closest living relative of humans, a comparison of the orbicularis oris muscle between these species may increase our understanding of the morphological specializations related to the differing functional demands of their lips and the factors responsible for their divergent evolution. To this end, this study compares the microanatomy of the mid-line upper fibers of the orbicularis oris muscle between chimpanzees and humans. A mid-line portion of the orbicularis oris muscle was harvested from the upper lips of three chimpanzee and five human cadavers. The sampled blocks included the area between the lateral borders of the nasal alar cartilages in both species. Each sample was processed for paraffin histology, sectioned and stained with a variety of protocols. Sections were examined for fiber direction and relative thickness of muscle layers. Ratios of cross-sectional connective tissue area vs. cross-sectional muscle tissue area, muscle fiber diameter and relative dermal thickness were calculated for each species. In both species, a clear pars marginalis layer was recognized, contrary to previous reports that only humans possess this layer. In chimpanzees, the relative fiber diameter and relative amount of muscle tissue (i.e. based on ratio of connective tissue area : muscle tissue area) were significantly (P < 0.05) greater than in humans. In contrast, measurements of relative dermal thickness showed that humans have a greater average dermal thickness of the upper lip than chimpanzees. Taken together, these results suggest that both human and chimpanzee orbicularis oris muscle upper fibers meet the specific functional demands associated with their divergent vocal and facial display repertoires, the development of human

  12. OlyMPUS - The Ontology-based Metadata Portal for Unified Semantics

    NASA Astrophysics Data System (ADS)

    Huffer, E.; Gleason, J. L.

    2015-12-01

    The Ontology-based Metadata Portal for Unified Semantics (OlyMPUS), funded by the NASA Earth Science Technology Office Advanced Information Systems Technology program, is an end-to-end system designed to support data consumers and data providers, enabling the latter to register their data sets and provision them with the semantically rich metadata that drives the Ontology-Driven Interactive Search Environment for Earth Sciences (ODISEES). OlyMPUS leverages the semantics and reasoning capabilities of ODISEES to provide data producers with a semi-automated interface for producing the semantically rich metadata needed to support ODISEES' data discovery and access services. It integrates the ODISEES metadata search system with multiple NASA data delivery tools to enable data consumers to create customized data sets for download to their computers, or for NASA Advanced Supercomputing (NAS) facility registered users, directly to NAS storage resources for access by applications running on NAS supercomputers. A core function of NASA's Earth Science Division is research and analysis that uses the full spectrum of data products available in NASA archives. Scientists need to perform complex analyses that identify correlations and non-obvious relationships across all types of Earth System phenomena. Comprehensive analytics are hindered, however, by the fact that many Earth science data products are disparate and hard to synthesize. Variations in how data are collected, processed, gridded, and stored, create challenges for data interoperability and synthesis, which are exacerbated by the sheer volume of available data. Robust, semantically rich metadata can support tools for data discovery and facilitate machine-to-machine transactions with services such as data subsetting, regridding, and reformatting. Such capabilities are critical to enabling the research activities integral to NASA's strategic plans. However, as metadata requirements increase and competing standards emerge

  13. High Voltage EEE Parts for EMA/EHA Applications on Manned Launch Vehicles

    NASA Technical Reports Server (NTRS)

    Griffin, Trent; Young, David

    2011-01-01

    The objective of this paper is an assessment of high voltage electronic components required for high horsepower electric thrust vector control (TVC) systems for human spaceflight launch critical application. The scope consists of creating of a database of available Grade 1 electrical, electronic and electromechanical (EEE) parts suited to this application, a qualification path for potential non-Grade 1 EEE parts that could be used in these designs, and pathfinder testing to validate aspects of the proposed qualification plan. Advances in the state of the art in high power electric power systems enable high horsepower electric actuators, such as the electromechnical actuator (EMA) and the electro-hydrostatic actuator (EHA), to be used in launch vehicle TVC systems, dramaticly reducing weight, complexity and operating costs. Designs typically use high voltage insulated gate bipolar transistors (HV-IGBT). However, no Grade 1 HV-IGBT exists and it is unlikely that market factors alone will produce such high quality parts. Furthermore, the perception of risk, the lack of qualification methodoloy, the absence of manned space flight heritage and other barriers impede the adoption of commercial grade parts onto the critical path. The method of approach is to identify high voltage electronic component types and key parameters for parts currently used in high horsepower EMA/EHA applications, to search for higher quality substitutes and custom manufacturers, to create a database for these parts, and then to explore ways to qualify these parts for use in human spaceflight launch critical application, including grossly derating and possibly treating hybrid parts as modules. This effort is ongoing, but results thus far include identification of over 60 HV-IGBT from four manufacturers, including some with a high reliability process flow. Voltage ranges for HV-IGBT have been identified, as has screening tests used to characterize HV-IGBT. BSI BS ISO 21350 Space systems Off

  14. Confidence and connectedness: Indigenous Māori women's views on personal safety in the context of intimate partner violence.

    PubMed

    Wilson, Denise; Jackson, Debra; Herd, Ruth

    2016-07-01

    ori (New Zealand) women, similar to women belonging to Indigenous and minority groups globally, have high levels of lifetime abuse, assault, and homicide, and are over-represented in events that compromise their safety. We sought insights into how Māori women view safety. Twenty Māori women's narratives revealed safety as a holistic concept involving a number of different elements. We found women had developed an acute sense of the concept of safety. They had firm views and clear strategies to maintain their own safety and that of their female family and friends. These women also provided insights into their experiences of feeling unsafe. PMID:26491900

  15. The Landsat Data Continuity Mission Operational Land Imager (OLI) Radiometric Calibration

    NASA Technical Reports Server (NTRS)

    Markham, Brian L.; Dabney, Philip W.; Murphy-Morris, Jeanine E.; Knight, Edward J.; Kvaran, Geir; Barsi, Julia A.

    2010-01-01

    The Operational Land Imager (OLI) on the Landsat Data Continuity Mission (LDCM) has a comprehensive radiometric characterization and calibration program beginning with the instrument design, and extending through integration and test, on-orbit operations and science data processing. Key instrument design features for radiometric calibration include dual solar diffusers and multi-lamped on-board calibrators. The radiometric calibration transfer procedure from NIST standards has multiple checks on the radiometric scale throughout the process and uses a heliostat as part of the transfer to orbit of the radiometric calibration. On-orbit lunar imaging will be used to track the instruments stability and side slither maneuvers will be used in addition to the solar diffuser to flat field across the thousands of detectors per band. A Calibration Validation Team is continuously involved in the process from design to operations. This team uses an Image Assessment System (IAS), part of the ground system to characterize and calibrate the on-orbit data.

  16. Assessment of Sentinel-3/OLCI Sub-Pixel Variability and Platform Impact Using Landsat-8/OLI

    NASA Astrophysics Data System (ADS)

    Vanhellemont, Quinten; Ruddick, Kevin

    2015-12-01

    Validation and calibration of ocean colour sensors with in situ data is key for successful exploitation of their data. Ship campaigns are expensive and provide a low number of good matchups, whereas autonomous systems can typically provide a matchup for each cloud-free scene. With the distribution of free and high quality imagery from Landsat-8, the amount of natural spatial variability in the coastal zone becomes quantifiable, and the possible impact of measurement platforms (ships, moorings, structures) on the signal measured by the satellite becomes clear. Here we present the use of Landsat-8/OLI imagery (30m) to assess the spatial variability within a Sentinel-3/OLCI pixel (300m) at validation sites, as well as an illustration of the impacts of the measurement platforms on the satellite measurement.

  17. Regulatory approval of pharmaceuticals without a randomised controlled study: analysis of EMA and FDA approvals 1999–2014

    PubMed Central

    Hatswell, Anthony J; Baio, Gianluca; Berlin, Jesse A; Irs, Alar; Freemantle, Nick

    2016-01-01

    Introduction The efficacy of pharmaceuticals is most often demonstrated by randomised controlled trials (RCTs); however, in some cases, regulatory applications lack RCT evidence. Objective To investigate the number and type of these approvals over the past 15 years by the European Medicines Agency (EMA) and the US Food and Drug Administration (FDA). Methods Drug approval data were downloaded from the EMA website and the ‘Drugs@FDA’ database for all decisions on pharmaceuticals published from 1 January 1999 to 8 May 2014. The details of eligible applications were extracted, including the therapeutic area, type of approval and review period. Results Over the period of the study, 76 unique indications were granted without RCT results (44 by the EMA and 60 by the FDA), demonstrating that a substantial number of treatments reach the market without undergoing an RCT. The majority was for haematological malignancies (34), with the next most common areas being oncology (15) and metabolic conditions (15). Of the applications made to both agencies with a comparable data package, the FDA granted more approvals (43/44 vs 35/44) and took less time to review products (8.7 vs 15.5 months). Products reached the market first in the USA in 30 of 34 cases (mean 13.1 months) due to companies making FDA submission before EMA submissions and faster FDA review time. Discussion Despite the frequency with which approvals are granted without RCT results, there is no systematic monitoring of such treatments to confirm their effectiveness or consistency regarding when this form of evidence is appropriate. We recommend a more open debate on the role of marketing authorisations granted without RCT results, and the development of guidelines on what constitutes an acceptable data package for regulators. PMID:27363818

  18. A multicharge ion source (Supernanogan) for the OLIS facility at ISAC/TRIUMF

    SciTech Connect

    Jayamanna, K.; Wight, G.; Gallop, D.; Dube, R.; Jovicic, V.; Laforge, C.; Marchetto, M.; Leross, M.; Louie, D.; Laplante, R.; Laxdal, R.; McDonald, M.; Wiebe, G. J.; Wang, V.; Yan, F.

    2010-02-15

    The Off-Line Ion Source (OLIS) [K. Jayamanna, D. Yuan, T. Kuo, M. MacDonald, P. Schmor, and G. Dutto, Rev. Sci. Instrum. 67, 1061 (1996); K. Jayamanna, Rev. Sci. Instrum. 79, 02711 (2008)] facility consists of a high voltage terminal containing a microwave cusp ion source, either a surface ion source or a hybrid surface-arc discharge ion source [K. Jayamanna and C. Vockenhuber, Rev. Sci. Instrum. 79, 02C712 (2008)], and an electrostatic switch that allows the selection of any one of the sources without mechanical intervention. These sources provide a variety of +1 beams up to mass 30 for Isotope Separator and ACcelerator (ISAC) [R. E. Laxdal, Nucl. Instrum. Methods Phys. Res. B 204, 400 (2003)] experiments, commissioning the accelerators, setting up the radioactive experiments, and for tuning the beam lines. The radio frequency quadrupole (RFQ) [M. Marchetto, Z. T. Ang, K. Jayamanna, R. E. Laxdal, A. Mitra, and V. Zvyagintsev, Eur. Phys. J. Spec. Top. 150, 241 (2005)] injector accelerator is a constant velocity machine designed to accept only 2 keV/u and the source extraction energy is limited to 60 kV. Further stripping is then needed downstream of the RFQ to inject the beam into the drift tube linac [M. Marchetto, Z. T. Ang, K. Jayamanna, R. E. Laxdal, A. Mitra, and V. Zvyagintsev, Eur. Phys. J. Spec. Top. 150, 241 (2005)] accelerator that requires A/q up to 6. Base on this constraints a multicharge ion source capable to deliver beams above mass 30 with A/q up to 6 was needed in order to reach full capability of the ISAC facility. A Supernanogan [C. Bieth et al., Nucleonika 48, S93 (2003)] multicharge ion source was then purchased from Pantechnik and was installed in the OLIS terminal. Commissioning and performance of the Supernanogan with some results such as emittance dependence of the charge states as well as charge state efficiencies are presented.

  19. A multicharge ion source (Supernanogan) for the OLIS facility at ISAC/TRIUMFa)

    NASA Astrophysics Data System (ADS)

    Jayamanna, K.; Wight, G.; Gallop, D.; Dube, R.; Jovicic, V.; Laforge, C.; Marchetto, M.; Leross, M.; Louie, D.; Laplante, R.; Laxdal, R.; McDonald, M.; Wiebe, G. J.; Wang, V.; Yan, F.

    2010-02-01

    The Off-Line Ion Source (OLIS) [K. Jayamanna, D. Yuan, T. Kuo, M. MacDonald, P. Schmor, and G. Dutto, Rev. Sci. Instrum. 67, 1061 (1996); K. Jayamanna, Rev. Sci. Instrum. 79, 02711 (2008)] facility consists of a high voltage terminal containing a microwave cusp ion source, either a surface ion source or a hybrid surface-arc discharge ion source [K. Jayamanna and C. Vockenhuber, Rev. Sci. Instrum. 79, 02C712 (2008)], and an electrostatic switch that allows the selection of any one of the sources without mechanical intervention. These sources provide a variety of +1 beams up to mass 30 for Isotope Separator and ACcelerator (ISAC) [R. E. Laxdal, Nucl. Instrum. Methods Phys. Res. B 204, 400 (2003)] experiments, commissioning the accelerators, setting up the radioactive experiments, and for tuning the beam lines. The radio frequency quadrupole (RFQ) [M. Marchetto, Z. T. Ang, K. Jayamanna, R. E. Laxdal, A. Mitra, and V. Zvyagintsev, Eur. Phys. J. Spec. Top. 150, 241 (2005)] injector accelerator is a constant velocity machine designed to accept only 2 keV/u and the source extraction energy is limited to 60 kV. Further stripping is then needed downstream of the RFQ to inject the beam into the drift tube linac [M. Marchetto, Z. T. Ang, K. Jayamanna, R. E. Laxdal, A. Mitra, and V. Zvyagintsev, Eur. Phys. J. Spec. Top. 150, 241 (2005)] accelerator that requires A/q up to 6. Base on this constraints a multicharge ion source capable to deliver beams above mass 30 with A/q up to 6 was needed in order to reach full capability of the ISAC facility. A Supernanogan [C. Bieth et al., Nucleonika 48, S93 (2003)] multicharge ion source was then purchased from Pantechnik and was installed in the OLIS terminal. Commissioning and performance of the Supernanogan with some results such as emittance dependence of the charge states as well as charge state efficiencies are presented.

  20. A Comparative Review of Waivers Granted in Pediatric Drug Development by FDA and EMA from 2007-2013

    PubMed Central

    Egger, Gunter F.; Wharton, Gerold T.; Malli, Suzanne; Temeck, Jean; Murphy, M. Dianne; Tomasi, Paolo

    2016-01-01

    Background The European Union and the United States have different legal frameworks in place for pediatric drug development, which can potentially lead to different pediatric research requirements for the pharmaceutical industry. This manuscript compares pediatric clinical trial waivers granted by the European Medicines Agency (EMA) and the US Food and Drug Administration (FDA). Methods This is a retrospective review comparing EMA’s Paediatric Committee (PDCO) decisions with FDA’s Pediatric Review Committee (PeRC) recommendations for all product-specific pediatric full waiver applications submitted to EMA from January 2007 through December 2013. Using baseline data from EMA, we matched product-specific waivers with their FDA equivalents during the study period. Results For single active substance products, PDCO and PeRC adopted similar opinions in 42 of 49 indications (86%). For fixed-dose combinations, PDCO and PeRC adopted similar opinions in 24 of 31 indications (77%). Conclusion Despite the different legal frameworks, criteria, and processes of determination, the waiver decisions of the 2 agencies were similar in the majority of cases.

  1. Searching chromosomal landmarks in Indian lentils through EMA-based Giemsa staining method.

    PubMed

    Jha, Timir Baran; Halder, Mihir

    2016-09-01

    Lentil is one of the oldest protein-rich food crop with only one cultivated and six wild species. India is one important cultivator, producer and consumer of lentils and possesses a large number of germplasms. All species of lentil show 2n = 14 chromosomes. The primary objective of the present paper is to search chromosomal landmarks through enzymatic maceration and air drying (EMA)-based Giemsa staining method in five Indian lentil species not reported elsewhere at a time. Additionally, gametic chromosome analysis, tendril formation and seed morphology have been studied to ascertain interspecific relationships in lentils. Chromosome analysis in Lens culinaris, Lens orientalis and Lens odemensis revealed that they contain intercalary sat chromosome and similar karyotypic formula, while Lens nigricans and Lens lamottei showed presence of terminal sat chromosomes not reported earlier. This distinct morphological feature in L. nigricans and L. lamottei may be considered as chromosomal landmark. Meiotic analysis showed n = 7 bivalents in L. culinaris, L. nigricans and L. lamottei. No tendril formation was observed in L. culinaris, L. orientalis and L. odemensis while L. nigricans and L. lamottei developed very prominent tendrils. Based on chromosomal analysis, tendril formation and seed morphology, the five lentil species can be separated into two distinct groups. The outcome of this research may enrich conventional and biotechnological breeding programmes in lentil and may facilitate an easy and alternative method for identification of interspecific hybrids. PMID:26342302

  2. Barriers to best outcomes in breastfeeding for Māori: mothers' perceptions, whānau perceptions, and services.

    PubMed

    Glover, Marewa; Waldon, John; Manaena-Biddle, Harangi; Holdaway, Maureen; Cunningham, Chris

    2009-08-01

    This research explores the perceptions of New Zealand Māori women and their whānau (customary Māori extended family) toward barriers to achieving best outcomes in infant feeding: exclusively breastfed infants at 6 months. Interviews are undertaken with 59 Māori women who have given birth in the previous 3 years and 27 whānau members. Although mothers and whānau members feel positively toward breastfeeding and generally expect to breastfeed exclusively, these expectations are unmet in many cases because of lack of support when establishing breastfeeding; lack of support when life circumstances change; lack of timely, culturally relevant, and comprehensible information; confusion about smoking while breastfeeding; uncertainty about the safety of bed-sharing, and perceived lack of acceptability of breastfeeding in public. The relatively high rates of tobacco use by Māori create a tension for breastfeeding mothers, cited by some as a reason for ending breastfeeding prematurely. PMID:19286841

  3. L'effet Casimir : théorie et expériences

    NASA Astrophysics Data System (ADS)

    Lambrecht, A.; Genet, C.; Intravaia, F.; Reynaud, S.

    2004-11-01

    L'existence de fluctuations irréductibles de champ dans le vide est une prédiction importante de la théorie quantique. Ces fluctuations ont de nombreuses conséquences observables comme l'effet Casimir, qui est maintenant mesuré avec une bonne précision et un bon accord avec la théorie, pourvu que celle-ci tienne compte des différences entre les expériences rélles et la situation idéale considérée par H.G.B. Casimir. Nous présenterons quelqu'unes des expériences récentes et discuterons les principales corrections à la force de Casimir liées à la situation expérimentale.

  4. MOST OBSERVATIONS OF {sigma} Ori E: CHALLENGING THE CENTRIFUGAL BREAKOUT NARRATIVE

    SciTech Connect

    Townsend, R. H. D.; Rivinius, Th.; Rowe, J. F.; Moffat, A. F. J.; Matthews, J. M.; Kallinger, T.; Kuschnig, R.; Bohlender, D.; Neiner, C.; Telting, J. H.; Guenther, D. B.; Rucinski, S. M.; Sasselov, D.; Weiss, W. W.

    2013-05-20

    We present results from three weeks' photometric monitoring of the magnetic helium-strong star {sigma} Ori E using the Microvariability and Oscillations of Stars microsatellite. The star's light curve is dominated by twice-per-rotation eclipse-like dimmings arising when magnetospheric clouds transit across and occult the stellar disk. However, no evidence is found for any abrupt centrifugal breakout of plasma from the magnetosphere, either in the residual flux or in the depths of the light minima. Motivated by this finding we compare the observationally inferred magnetospheric mass against that predicted by a breakout analysis. The large discrepancy between the values leads us to argue that centrifugal breakout does not play a significant role in establishing the magnetospheric mass budget of {sigma} Ori E.

  5. Magnetic Braking of the Main Component of θ^{1} Ori C

    NASA Astrophysics Data System (ADS)

    Balega, Yu. Yu.; Leushin, V. V.; Weigelt, G.

    θ^{1} Ori C is the nearest massive O star at the early phase of the evolution. Interferometric study of the star at the 6-m BTA telescope showed that it is a binary system with an orbital period of 11 yr (Weigelt et al., 1999). It was also found that θ^{1} Ori C is an oblique magnetic rotator (Donati et al., 2002; Wade et al., 2006). From high resolution spectra of the binary collected with the 6-m telescope we succeeded to separate week lines of the secondary component and to measure its rotation velocity. It was found that the secondary rotates three times faster than the primary. We discuss the possibility of magnetic braking of the primary star as the mechanism explaining the difference of rotation.

  6. Narratives and traits in personality development among New Zealand Māori, Chinese, and European adolescents.

    PubMed

    Reese, Elaine; Chen, Yan; McAnally, Helena M; Myftari, Ella; Neha, Tia; Wang, Qi; Jack, Fiona

    2014-07-01

    Narrative and trait levels of personality were assessed in a sample of 268 adolescents from age 12 to 21 from New Zealand Māori, Chinese, and European cultures. Adolescents narrated three critical events and completed a Big Five personality inventory. Each narrative was coded for causal and thematic coherence. NZ Chinese adolescents reported lower levels of extraversion, agreeableness, conscientiousness, and openness, and higher levels of neuroticism, than NZ Māori or European adolescents. Cultural differences were also evident in narrative coherence. Adolescents in all three groups demonstrated age-related increases in thematic coherence, but only NZ European adolescents demonstrated the expected age-related increases in causal coherence. Narrative identity and traits were distinct aspects of personality for younger adolescents, but were linked for middle and older adolescents. These findings support the importance of both narrative identity and traits in understanding personality development in adolescents across cultures. PMID:24703815

  7. Chromospheric and transition region structure of the Herbig emission stars HR 5999 and BN Ori

    NASA Technical Reports Server (NTRS)

    Brown, A.; Tjinadjie, H. R. E.; The, P. S.

    1986-01-01

    The IUE spectra of HR 5999 and BN Ori were analyzed, showing strong emission lines of C II, C IV, O I, and Si IV (also Mg II in HR 5999), indicating the presence of chromospheres and transition regions around these high mass premain sequence (PMS) stars. Infrared, optical, and ultraviolet observations show that BN Ori has a spectral type of FO-2 IIIe, a bolometric luminosity of 36 L, age 1.5 million yr, and mass 2 to 2.5 solar mass. As HR 5999 fades, the ratio of total to selective absorption increases indicating the appearance of larger grains or changes in grain alignment. Emission measure distributions are used to investigate the atmospheric structure of the stars. As HR 5999 fades the emission measure distribution rises systematically and the inferred transition region pressures increase. The transition region and chromospheric radiative losses are large and imply input mechanical energy fluxes similar to those of lower mass PMS stars.

  8. Detecting Chlorophyll and Phycocyanin in Lake Texoma Using in Situ Photo from GPS Digital Camera and Landsat 8 OLI Imagery

    NASA Astrophysics Data System (ADS)

    Zhang, J.; Hambright, K.; Xiao, X.

    2013-12-01

    Characterizing the temporal and spatial change of algae blooms across lake systems is difficult through conventional sampling methodologies. The application of remote sensing to lake water quality has improved significantly over recent years. However there are seldom reports about in situ photos from GPS digital camera and the new satellite Landsat 8 OLI monitoring algae blooms in freshwater lakes. A pilot study was carried out in Lake Texoma in Oklahoma on April 25th 2013. At each site (12 sites in total), pigments (chlorophyll a and phycocyanin concentration), in situ spectral data and digital photos had been acquired using Hydrolab DS5X sonde (calibrated routinely against laboratory standards), ASD FieldSpec and GPS camera, respectively. The field spectral data sets were transformed to blue, green and red ranges which match the spectral resolution of Landsat 8 OLI images by average spectral reflectance signature to the first four Landsat 8 OLI bands. Comparing with other ratio indices, red/ blue was the best ratio index which can be employed in predicting phycocyanin and chlorophyll a concentration; and pigments (phycocyanin and chlorophyll a) concentration in whole depth should be selected to be detected using remote sensing method in Lake Texoam in the followed analysis. An image based darkest pixel subtraction method was used to process atmospheric correction of Landsat 8 OLI images. After atmospheric correction, the DN values were extracted and used to compute ratio of band4 (Red)/ band1(Blue). Higher correlation coefficients existed in both between resampled spectral reflectance and ratio of red/ blue of photo DN values (R2=0.9425 n=12) and between resampled spectral reflectance and ratio of red/ blue of Landsat 8 OLI images DN values (R2=0.8476 n=12). Finally, we analyzed the correlation between pigments concentrations in whole depth and DN values ratio red/ blue of both Landsat 8 OLI images and digital photos. There were higher correlation coefficients

  9. Neoliberalism and indigenous knowledge: Māori health research and the cultural politics of New Zealand's "National Science Challenges".

    PubMed

    Prussing, Erica; Newbury, Elizabeth

    2016-02-01

    In 2012-13 the Ministry of Business, Innovation and Employment (MBIE) in New Zealand rapidly implemented a major restructuring of national scientific research funding. The "National Science Challenges" (NSC) initiative aims to promote greater commercial applications of scientific knowledge, reflecting ongoing neoliberal reforms in New Zealand. Using the example of health research, we examine the NSC as a key moment in ongoing indigenous Māori advocacy against neoliberalization. NSC rhetoric and practice through 2013 moved to marginalize participation by Māori researchers, in part through constructing "Māori" and "science" as essentially separate arenas-yet at the same time appeared to recognize and value culturally distinctive forms of Māori knowledge. To contest this "neoliberal multiculturalism," Māori health researchers reasserted the validity of culturally distinctive knowledge, strategically appropriated NSC rhetoric, and marshalled political resources to protect Māori research infrastructure. By foregrounding scientific knowledge production as an arena of contestation over neoliberal values and priorities, and attending closely to how neoliberalizing tactics can include moves to acknowledge cultural diversity, this analysis poses new questions for social scientific study of global trends toward reconfiguring the production of knowledge about health. Study findings are drawn from textual analysis of MBIE documents about the NSC from 2012 to 2014, materials circulated by Māori researchers in the blogosphere in 2014, and ethnographic interviews conducted in 2013 with 17 Māori health researchers working at 7 sites that included university-based research centers, government agencies, and independent consultancies. PMID:26735331

  10. Regulation of Epstein-Barr virus OriP replication by poly(ADP-ribose) polymerase 1.

    PubMed

    Tempera, Italo; Deng, Zhong; Atanasiu, Constandache; Chen, Chi-Ju; D'Erme, Maria; Lieberman, Paul M

    2010-05-01

    Poly(ADP-ribose) polymerase (PARP) is an abundant, chromatin-associated, NAD-dependent enzyme that functions in multiple chromosomal processes, including DNA replication and chromatin remodeling. The Epstein-Barr virus (EBV) origin of plasmid replication (OriP) is a dynamic genetic element that confers stable episome maintenance, DNA replication initiation, and chromatin organization functions. OriP function depends on the EBV-encoded origin binding protein EBNA1. We have previously shown that EBNA1 is subject to negative regulation by poly(ADP-ribosyl)ation (PARylation). We now show that PARP1 physically associates with OriP in latently EBV-infected B cells. Short hairpin RNA depletion of PARP1 enhances OriP replication activity and increases EBNA1, origin recognition complex 2 (ORC2), and minichromosome maintenance complex (MCM) association with OriP. Pharmacological inhibitors of PARP1 enhance OriP plasmid maintenance and increase EBNA1, ORC2, and MCM3 occupancy at OriP. PARylation in vitro inhibits ORC2 recruitment and remodels telomere repeat factor (TRF) binding at the dyad symmetry (DS) element of OriP. Purified PARP1 can ribosylate EBNA1 at multiple sites throughout its amino terminus but not in the carboxy-terminal DNA binding domain. We also show that EBNA1 linking regions (LR1 and LR2) can bind directly to oligomers of PAR. We propose that PARP1-dependent PARylation of EBNA1 and adjacently bound TRF2 induces structural changes at the DS element that reduce EBNA1 DNA binding affinity and functional recruitment of ORC. PMID:20219917

  11. X-RAY PRODUCTION BY V1647 Ori DURING OPTICAL OUTBURSTS

    SciTech Connect

    Teets, William K.; Weintraub, David A.; Grosso, Nicolas; Principe, David; Kastner, Joel H.; Richmond, Michael; Hamaguchi, Kenji

    2011-11-10

    The pre-main-sequence (PMS) star V1647 Ori has recently undergone two optical/near-infrared (OIR) outbursts that are associated with dramatic enhancements in the stellar accretion rate. Our intensive X-ray monitoring of this object affords the opportunity to investigate whether and how the intense X-ray emission is related to PMS accretion activity. Our analysis of all 14 Chandra X-Ray Observatory observations of V1647 Ori demonstrates that variations in the X-ray luminosity of V1647 Ori are correlated with similar changes in the OIR brightness of this source during both (2003-2005 and 2008) eruptions, strongly supporting the hypothesis that accretion is the primary generation mechanism for the X-ray outbursts. Furthermore, the Chandra monitoring demonstrates that the X-ray spectral properties of the second eruption were strikingly similar to those of the 2003 eruption. We find that X-ray spectra obtained immediately following the second outburst-during which V1647 Ori exhibited high X-ray luminosities, high hardness ratios, and strong X-ray variability-are well modeled as a heavily absorbed (N{sub H} {approx} 4 Multiplication-Sign 10{sup 22} cm{sup -2}), single-component plasma with characteristic temperatures (kT{sub X} {approx} 2-6 keV) that are consistently too high to be generated via accretion shocks but are in the range expected for plasma heated by magnetic reconnection events. We also find that the X-ray absorbing column has not changed significantly throughout the observing campaign. Since the OIR and X-ray changes are correlated, we hypothesize that these reconnection events either occur in the accretion stream connecting the circumstellar disk to the star or in accretion-enhanced protostellar coronal activity.

  12. Reducing smoking in pregnancy among Māori women: "aunties" perceptions and willingness to help.

    PubMed

    van Esdonk, Tineke; Glover, Marewa; Kira, Anette; Wagemakers, Annemarie

    2014-12-01

    ori (the indigenous people of New Zealand) women have high rates of smoking during pregnancy and 42 % register with a lead maternity carer (LMC) after their first trimester, delaying receipt of cessation support. We used a participatory approach with Māori community health workers ("Aunties") to determine their willingness and perceived ability to find pregnant Māori smokers early in pregnancy and to provide cessation support. Three meetings were held in three different regions in New Zealand. The aunties believed they could find pregnant women in first trimester who were still smoking by using their networks, the 'kumara-vine' (sweet potato vine), tohu (signs/omens), their instinct and by looking for women in the age range most likely to get pregnant. The aunties were willing to provide cessation and other support but they said they would do it in a "Māori way" which depended on formed relationships and recognised roles within families. The aunties' believed that their own past experiences with pregnancy and/or smoking would be advantageous when providing support. Aunties' knowledge about existing proven cessation methods and services and knowledge about how to register with a LMC ranged from knowing very little to having years of experience working in the field. They were all supportive of receiving up-to-date information on how best to support pregnant women to stop smoking. Aunties in communities believe that they could find pregnant women who smoke and they are willing to help deliver cessation support. Our ongoing research will test the effectiveness of such an approach. PMID:24214817

  13. VLA observations of rapid 6 cm flux variations in alpha Ori

    NASA Technical Reports Server (NTRS)

    Bookbinder, J. A.; Stencel, R. E.; Drake, S. A.; Simon, T.; Linsky, J. L.; Florkowski, D.

    1987-01-01

    The red supergiant star alpha Ori was monitored with the Very Large Array (VLA). Thirteen observations at 6 cm show stochastic variations, at the 30 to 40 percent level, with no long term trend. All data was clipped and tapered in AIPS to minimize differences between VLA arrays. The calibration source varied by less than 10 percent over the same interval. The VLA observations of alpha Ori were continued, as well as alpha Her and alpha Sco, at both 2 and 6 cm, to confirm this result and search for long term trends. The stochastic 6 cm flux behavior, with 30 to 40 percent changes on all timescales from the shortest interval of 10 days to the longest, seems at odds with the 400 day periodic variations in U-band photometry and Mg II UV fluxes reported by Dupree, et al. The observed 6 cm flux was 25 percent below the 6 cm flux reported earlier this decade. Several models for the outer atmosphere of alpha Ori place the 6 cm optical depth unity location at several stellar radii above the optical photosphere. The rapid, stochastic variations reported are difficult to reconcile with almost any global process, such as pulsation, Alfven waves or periastron passage.

  14. A Comparison of Pacific, Māori, and European Violent Youth Offenders in New Zealand.

    PubMed

    Ioane, Julia; Lambie, Ian; Percival, Teuila

    2016-05-01

    Pacific Island and Māori youth are disproportionately overrepresented in Aotearoa/New Zealand in violent offending. To date, research has not examined Pacific Island violent youth offenders in comparison with other ethnic populations. This study compared Pacific Island violent youth offenders with Māori and European violent youth offenders to determine whether similarities or differences existed in their offending, social, and demographic characteristics. Findings showed that Pacific Island violent youth offenders, in comparison with Māori and European violent youth offenders, were more likely to have grown up in the lowest socioeconomic deprivation areas in New Zealand, were more likely to be older when they first started offending, and their first offence was more likely to be of a serious, violent nature. Family violence was present among all three ethnic groups highlighting the ongoing importance of intervention in this area. The findings of the current study are likely to have implications for government department policy makers, along with program providers and practitioners. Recommendations are made regarding clinical implications and future research on this population. PMID:25476711

  15. Effect of Expiratory Resistive Loading in Expiratory Muscle Strength Training on Orbicularis Oris Muscle Activity

    PubMed Central

    Yanagisawa, Yukio; Matsuo, Yoshimi; Shuntoh, Hisato; Horiuchi, Noriaki

    2014-01-01

    [Purpose] The purpose of this study was to elucidate the effect of expiratory resistive loading on orbicularis oris muscle activity. [Subjects] Subjects were 23 healthy individuals (11 males, mean age 25.5±4.3 years; 12 females, mean age 25.0±3.0 years). [Methods] Surface electromyography was performed to measure the activity of the orbicularis oris muscle during maximum lip closure and resistive loading at different expiratory pressures. Measurement was performed at 10%, 30%, 50%, and 100% of maximum expiratory pressure (MEP) for all subjects. The t-test was used to compare muscle activity between maximum lip closure and 100% MEP, and analysis of variance followed by multiple comparisons was used to compare the muscle activities observed at different expiratory pressures. [Results] No significant difference in muscle activity was observed between maximum lip closure and 100% MEP. Analysis of variance with multiple comparisons revealed significant differences among the different expiratory pressures. [Conclusion] Orbicularis oris muscle activity increased with increasing expiratory resistive loading. PMID:24648644

  16. The Escherichia coli Fis protein prevents initiation of DNA replication from oriC in vitro.

    PubMed Central

    Wold, S; Crooke, E; Skarstad, K

    1996-01-01

    Fis protein participates in the normal control of chromosomal replication in Escherichia coli. However, the mechanism by which it executes its effect is largely unknown. We demonstrate an inhibitory influence of purified Fis protein on replication from oriC in vitro. Fis inhibits DNA synthesis equally well in replication systems either dependent upon or independent of RNA polymerase, even when the latter is stimulated by the presence of HU or IHF. The extent of inhibition by Fis is modulated by the concentrations of DnaA protein and RNA polymerase; the more limiting the amounts of these, the more severe the inhibition by Fis. Thus, the level of inhibition seems to depend on the ease with which the open complex can be formed. Fis-mediated inhibition of DNA replication does not depend on a functional primary Fis binding site between DnaA boxes R2 and R3 in oriC, as mutations that cause reduced binding of Fis to this site do not affect the degree of inhibition. The data presented suggest that Fis prevents formation of an initiation-proficient structure at oriC by forming an alternative, initiation-preventive complex. This indicates a negative role for Fis in the regulation of replication initiation. PMID:8836178

  17. Low heel ultrasound parameters predict mortality in men: results from the European Male Ageing Study (EMAS)

    PubMed Central

    Pye, Stephen R.; Vanderschueren, Dirk; Boonen, Steven; Gielen, Evelien; Adams, Judith E.; Ward, Kate A.; Lee, David M.; Bartfai, György; Casanueva, Felipe F.; Finn, Joseph D.; Forti, Gianni; Giwercman, Aleksander; Han, Thang S.; Huhtaniemi, Ilpo T.; Kula, Krzysztof; Lean, Michael E.; Pendleton, Neil; Punab, Margus; Wu, Frederick C.; O'Neill, Terence W.

    2015-01-01

    Background: low bone mineral density measured by dual-energy x-ray absorptiometry is associated with increased mortality. The relationship between other skeletal phenotypes and mortality is unclear. The aim of this study was to determine the relationship between quantitative heel ultrasound parameters and mortality in a cohort of European men. Methods: men aged 40–79 years were recruited for participation in a prospective study of male ageing: the European Male Ageing Study (EMAS). At baseline, subjects attended for quantitative ultrasound (QUS) of the heel (Hologic—SAHARA) and completed questionnaires on lifestyle factors and co-morbidities. Height and weight were measured. After a median of 4.3 years, subjects were invited to attend a follow-up assessment, and reasons for non-participation, including death, were recorded. The relationship between QUS parameters (broadband ultrasound attenuation [BUA] and speed of sound [SOS]) and mortality was assessed using Cox proportional hazards model. Results: from a total of 3,244 men (mean age 59.8, standard deviation [SD] 10.8 years), 185 (5.7%) died during the follow-up period. After adjusting for age, centre, body mass index, physical activity, current smoking, number of co-morbidities and general health, each SD decrease in BUA was associated with a 20% higher risk of mortality (hazard ratio [HR] per SD = 1.2; 95% confidence interval [CI] = 1.0–1.4). Compared with those in higher quintiles (2nd–5th), those in the lowest quintile of BUA and SOS had a greater mortality risk (BUA: HR = 1.6; 95% CI = 1.1–2.3 and SOS: HR = 1.6; 95% CI = 1.2–2.2). Conclusion: lower heel ultrasound parameters are associated with increased mortality in European men. PMID:26162912

  18. Climacteric medicine: European Menopause and Andropause Society (EMAS) statements on postmenopausal hormonal therapy.

    PubMed

    Skouby, Sven O; Barlow, David; Samsioe, Göran; Gompel, Anne; Pines, Amos; Al-Azzawi, Farok; Graziottin, Allezzandra; Hudita, Decebal; Rozenberg, Serge

    2004-05-28

    Hormonal therapy (HT) is one of the most frequently prescribed drug regimens for women after the age of 50 years. HT has been developed progressively since the 1960s to provide estrogen to those women (a) who require relief of symptoms which have resulted from reduced circulating estrogen or (b) to act as an anti-resorptive agent to counteract the effect of the increased bone turnover which occurs with falling menopausal estrogen levels and which results in loss of bone mass leading to postmenopausal osteoporosis. However, a large number of women pass through the menopausal transition without experiencing distress as a result of the natural fall in estrogen hormone levels and since the introduction HT has been thought to be associated with a number of health benefits that have been tested in clinical trials but not substantiated. In women experiencing distressing climacteric symptoms double-blind randomised controlled clinical trials with a variety of HT regimens have shown that HT of any type provides symptom relief with no alternative treatment of similar effect. The dose and regimen of HT need to be individualised and in general the appropriate dose is dependent on the menopausal age. Women experiencing urogenital estrogen deficiency symptoms require long-term treatment which is most easily achieved with local estrogen. With the perspective provided by the most recent epidemiological findings not least from the estrogen only arm of the Women's Health Initiative Study (WHI) EMAS supports research activities generating HT with new compositions including lower doses and a wider range of progestins in order to positively affect the balance of clinical benefit and risk. Currently, however, individualized and appropriate prescription of the available HT products together with life-style management will sustain possibilities for beneficial effects on climacteric symptoms, quality of life and degenerative diseases after the menopause. PMID:15223104

  19. The Operational Land Imager (OLI) and the Thermal Infrared Sensor (TIRS) on the Landsat Data Continuity Mission (LDCM)

    NASA Technical Reports Server (NTRS)

    Reuter, Dennis; Irons, James; Lunsford, Allen; Montanero, Matthew; Pellerano, Fernando; Richardson, Cathleen; Smith, Ramsey; Tesfaye, Zelalem; Thome, Kurtis

    2011-01-01

    The Landsat Data Continuity Mission (LDCM), a joint NASA and United States Geological Survey (USGS) mission, is scheduled for launch in December, 2012. The LDCM instrument payload will consist of the Operational Land Imager (OLI), provided by Ball Aerospace and Technology Corporation (BATC) under contract to NASA and the Thermal Infrared Sensor (TIRS), provided by NASA's Goddard Space Flight Center (GSFC). This paper will describe the design, capabilities and status of the OLI and TIRS instruments. The OLI will provide 8 channel multispectral images at a spatial resolution of 30 meters and panchromatic images at 15 meter spatial resolution. The TIRS is a 100 meter spatial resolution push-broom imager whose two spectral channels, centered at 10.8 and 12 microns, split the ETM+ thermal bands. The two channels allow the use of the "split-window" technique to aid in atmospheric correction. The TIRS focal plane consists of three Quantum Well Infrared Photodetector (QWIP) arrays to span the 185 km swath width. The OLI and TIRS instruments will be operated independently but in concert with each other. Data from both instruments will be merged into a single data stream at the (USGS)/Earth Resources Observation and Science (EROS) facility. The ground system, being developed by USGS, includes an Image Assessment System (lAS), similar to Landsat-7's, to operationally monitor, characterize and update the calibrations of the two sensors.

  20. Mapping of the Seagrass Cover Along the Mediterranean Coast of Turkey Using Landsat 8 Oli Images

    NASA Astrophysics Data System (ADS)

    Bakirman, T.; Gumusay, M. U.; Tuney, I.

    2016-06-01

    Benthic habitat is defined as ecological environment where marine animals, plants and other organisms live in. Benthic habitat mapping is defined as plotting the distribution and extent of habitats to create a map with complete coverage of the seabed showing distinct boundaries separating adjacent habitats or the use of spatially continuous environmental data sets to represent and predict biological patterns on the seafloor. Seagrass is an essential endemic marine species that prevents coast erosion and regulates carbon dioxide absorption in both undersea and atmosphere. Fishing, mining, pollution and other human activities cause serious damage to seabed ecosystems and reduce benthic biodiversity. According to the latest studies, only 5-10% of the seafloor is mapped, therefore it is not possible to manage resources effectively, protect ecologically important areas. In this study, it is aimed to map seagrass cover using Landsat 8 OLI images in the northern part of Mediterranean coast of Turkey. After pre-processing (e.g. radiometric, atmospheric, water depth correction) of Landsat images, coverage maps are produced with supervised classification using in-situ data which are underwater photos and videos. Result maps and accuracy assessment are presented and discussed.

  1. A bioinformatics prediction approach towards analyzing the glycosylation, co-expression and interaction patterns of epithelial membrane antigen (EMA/MUC1)

    NASA Astrophysics Data System (ADS)

    Kalra, Rajkumar S.; Wadhwa, Renu

    2015-02-01

    Epithelial membrane antigen (EMA or MUC1) is a heavily glycosylated, type I transmembrane glycoprotein commonly expressed by epithelial cells of duct organs. It has been shown to be aberrantly glycosylated in several diseases including cancer. Protein sequence based annotation and analysis of glycosylation profile of glycoproteins by robust computational and comprehensive algorithms provides possible insights to the mechanism(s) of anomalous glycosylation. In present report, by using a number of bioinformatics applications we studied EMA/MUC1 and explored its trans-membrane structural domain sequence that is widely subjected to glycosylation. Exploration of different extracellular motifs led to prediction of N and O-linked glycosylation target sites. Based on the putative O-linked target sites, glycosylated moieties and pathways were envisaged. Furthermore, Protein network analysis demonstrated physical interaction of EMA with a number of proteins and confirmed its functional involvement in cell growth and proliferation pathways. Gene Ontology analysis suggested an involvement of EMA in a number of functions including signal transduction, protein binding, processing & transport along with glycosylation. Thus, present study explored potential of bioinformatics prediction approach in analyzing glycosylation, co-expression and interaction patterns of EMA/MUC1 glycoprotein.

  2. A bioinformatics prediction approach towards analyzing the glycosylation, co-expression and interaction patterns of epithelial membrane antigen (EMA/MUC1)

    SciTech Connect

    Kalra, Rajkumar S. Wadhwa, Renu

    2015-02-27

    Epithelial membrane antigen (EMA or MUC1) is a heavily glycosylated, type I transmembrane glycoprotein commonly expressed by epithelial cells of duct organs. It has been shown to be aberrantly glycosylated in several diseases including cancer. Protein sequence based annotation and analysis of glycosylation profile of glycoproteins by robust computational and comprehensive algorithms provides possible insights to the mechanism(s) of anomalous glycosylation. In present report, by using a number of bioinformatics applications we studied EMA/MUC1 and explored its trans-membrane structural domain sequence that is widely subjected to glycosylation. Exploration of different extracellular motifs led to prediction of N and O-linked glycosylation target sites. Based on the putative O-linked target sites, glycosylated moieties and pathways were envisaged. Furthermore, Protein network analysis demonstrated physical interaction of EMA with a number of proteins and confirmed its functional involvement in cell growth and proliferation pathways. Gene Ontology analysis suggested an involvement of EMA in a number of functions including signal transduction, protein binding, processing and transport along with glycosylation. Thus, present study explored potential of bioinformatics prediction approach in analyzing glycosylation, co-expression and interaction patterns of EMA/MUC1 glycoprotein.

  3. Assembly of Helicobacter pylori initiation complex is determined by sequence-specific and topology-sensitive DnaA-oriC interactions.

    PubMed

    Donczew, Rafał; Mielke, Thorsten; Jaworski, Paweł; Zakrzewska-Czerwińska, Jolanta; Zawilak-Pawlik, Anna

    2014-07-29

    In bacteria, chromosome replication is initiated by binding of the DnaA initiator protein to DnaA boxes located in the origin of chromosomal replication (oriC). This leads to DNA helix opening within the DNA-unwinding element. Helicobacter pylori oriC, the first bipartite origin identified in Gram-negative bacteria, contains two subregions, oriC1 and oriC2, flanking the dnaA gene. The DNA-unwinding element region is localized in the oriC2 subregion downstream of dnaA. Surprisingly, oriC2-DnaA interactions were shown to depend on DNA topology, which is unusual in bacteria but is similar to initiator-origin interactions observed in higher organisms. In this work, we identified three DnaA boxes in the oriC2 subregion, two of which were bound only as supercoiled DNA. We found that all three DnaA boxes play important roles in orisome assembly and subsequent DNA unwinding, but different functions can be assigned to individual boxes. This suggests that the H. pylori oriC may be functionally divided, similar to what was described recently for Escherichia coli oriC. On the basis of these results, we propose a model of initiation complex formation in H. pylori. PMID:24862285

  4. The Design and Relevance of a Computerized Gamified Depression Therapy Program for Indigenous Māori Adolescents

    PubMed Central

    Fleming, Theresa; Lucassen, Mathijs; Stasiak, Karolina

    2015-01-01

    Background Depression is a major health issue among Māori indigenous adolescents, yet there has been little investigation into the relevance or effectiveness of psychological treatments for them. Further, consumer views are critical for engagement and adherence to therapy. However, there is little research regarding indigenous communities’ opinions about psychological interventions for depression. Objective The objective of this study was to conduct semistructured interviews with Māori (indigenous New Zealand) young people (taitamariki) and their families to find out their opinions of a prototype computerized cognitive behavioral therapy (cCBT) program called Smart, Positive, Active, Realistic, X-factor thoughts (SPARX), a free online computer game intended to help young persons with mild to moderate depression, feeling down, stress or anxiety. The program will teach them how to resolve their issues on their own using Cognitive Behavioural Therapy as psychotherapeutic approach. Methods There were seven focus groups on the subject of the design and cultural relevance of SPARX that were held, with a total of 26 participants (19 taitamarki, 7 parents/caregivers, all Māori). There were five of the groups that were with whānau (family groups) (n=14), one group was with Māori teenage mothers (n=4), and one group was with taitamariki (n=8). The general inductive approach was used to analyze focus group data. Results SPARX computerized therapy has good face validity and is seen as potentially effective and appealing for Māori people. Cultural relevance was viewed as being important for the engagement of Māori young people with SPARX. Whānau are important for young peoples’ well-being. Participants generated ideas for improving SPARX for Māori and for the inclusion of whānau in its delivery. Conclusions SPARX computerized therapy had good face validity for indigenous young people and families. In general, Māori participants were positive about the SPARX

  5. Ancient DNA recovers the origins of Māori feather cloaks.

    PubMed

    Hartnup, K; Huynen, L; Te Kanawa, R; Shepherd, L D; Millar, C D; Lambert, D M

    2011-10-01

    Feather cloaks ("kakahu"), particularly those adorned with kiwi feathers, are treasured items or "taonga" to the Māori people of "Aotearoa"/New Zealand. They are considered iconic expression of Māori culture. Despite their status, much of our knowledge of the materials used to construct cloaks, the provenance of cloaks, and the origins of cloak making itself, has been lost. We used ancient DNA methods to recover mitochondrial DNA sequences from 849 feather samples taken from 109 cloaks. We show that almost all (>99%) of the cloaks were constructed using feathers from North Island brown kiwi. Molecular sexing of nuclear DNA recovered from 92 feather cloak samples also revealed that the sex ratio of birds deviated from a ratio of 1:1 observed in reference populations. Additionally, we constructed a database of 185 mitochondrial control region DNA sequences of kiwi feathers comprising samples collected from 26 North Island locations together with data available from the literature. Genetic subdivision (G(ST)), nucleotide subdivision (N(ST)) and Spatial Analysis of Molecular Variants (SAMOVA) analyses revealed high levels of genetic structuring in North Island brown kiwi. Together with sequence data from previously studied ancient and modern kiwi samples, we were able to determine the geographic provenance of 847 cloak feathers from 108 cloaks. A surprising proportion (15%) of cloaks were found to contain feathers from different geographic locations, providing evidence of kiwi trading among Māori tribes or organized hunting trips into other tribal areas. Our data also suggest that the east of the North Island of New Zealand was the most prolific of all kiwi cloak making areas, with over 50% of all cloaks analyzed originating from this region. Similar molecular approaches have the potential to discover a wealth of lost information from artifacts of endemic cultures worldwide. PMID:21558445

  6. HH 222: A GIANT HERBIG-HARO FLOW FROM THE QUADRUPLE SYSTEM V380 ORI

    SciTech Connect

    Reipurth, Bo; Aspin, Colin; Connelley, M. S.; Bally, John; Geballe, T. R.; Kraus, Stefan; Appenzeller, Immo; Burgasser, Adam E-mail: caa@ifa.hawaii.edu E-mail: John.Bally@colorado.edu E-mail: stefan.kraus@cfa.harvard.edu E-mail: aburgasser@ucsd.edu

    2013-11-01

    HH 222 is a giant shocked region in the L1641 cloud, and is popularly known as the Orion Streamers or ''the waterfall'' on account of its unusual structure. At the center of these streamers are two infrared sources coincident with a nonthermal radio jet aligned along the principal streamer. The unique morphology of HH 222 has long been associated with this radio jet. However, new infrared images show that the two sources are distant elliptical galaxies, indicating that the radio jet is merely an improbable line-of-sight coincidence. Accurate proper motion measurements of HH 222 reveal that the shock structure is a giant bow shock moving directly away from the well-known, very young, Herbig Be star V380 Ori. The already known Herbig-Haro object HH 35 forms part of this flow. A new Herbig-Haro object, HH 1041, is found precisely in the opposite direction of HH 222 and is likely to form part of a counterflow. The total projected extent of this HH complex is 5.3 pc, making it among the largest HH flows known. A second outflow episode from V380 Ori is identified as a pair of HH objects, HH 1031 to the northwest and the already known HH 130 to the southeast, along an axis that deviates from that of HH 222/HH 1041 by only 3.°7. V380 Ori is a hierarchical quadruple system, including a faint companion of spectral type M5 or M6, which at an age of ∼1 Myr corresponds to an object straddling the stellar-to-brown dwarf boundary. We suggest that the HH 222 giant bow shock is a direct result of the dynamical interactions that led to the conversion from an initial non-hierarchical multiple system into a hierarchical configuration. This event occurred no more than 28,000 yr ago, as derived from the proper motions of the HH 222 giant bow shock.

  7. HH 222: A Giant Herbig-Haro Flow from the Quadruple System V380 Ori

    NASA Astrophysics Data System (ADS)

    Reipurth, Bo; Bally, John; Aspin, Colin; Connelley, M. S.; Geballe, T. R.; Kraus, Stefan; Appenzeller, Immo; Burgasser, Adam

    2013-11-01

    HH 222 is a giant shocked region in the L1641 cloud, and is popularly known as the Orion Streamers or "the waterfall" on account of its unusual structure. At the center of these streamers are two infrared sources coincident with a nonthermal radio jet aligned along the principal streamer. The unique morphology of HH 222 has long been associated with this radio jet. However, new infrared images show that the two sources are distant elliptical galaxies, indicating that the radio jet is merely an improbable line-of-sight coincidence. Accurate proper motion measurements of HH 222 reveal that the shock structure is a giant bow shock moving directly away from the well-known, very young, Herbig Be star V380 Ori. The already known Herbig-Haro object HH 35 forms part of this flow. A new Herbig-Haro object, HH 1041, is found precisely in the opposite direction of HH 222 and is likely to form part of a counterflow. The total projected extent of this HH complex is 5.3 pc, making it among the largest HH flows known. A second outflow episode from V380 Ori is identified as a pair of HH objects, HH 1031 to the northwest and the already known HH 130 to the southeast, along an axis that deviates from that of HH 222/HH 1041 by only 3.°7. V380 Ori is a hierarchical quadruple system, including a faint companion of spectral type M5 or M6, which at an age of ~1 Myr corresponds to an object straddling the stellar-to-brown dwarf boundary. We suggest that the HH 222 giant bow shock is a direct result of the dynamical interactions that led to the conversion from an initial non-hierarchical multiple system into a hierarchical configuration. This event occurred no more than 28,000 yr ago, as derived from the proper motions of the HH 222 giant bow shock.

  8. Discovery of two distorted interstellar bubbles. [found about T Orionis variable LL Ori and Zeta Oph

    NASA Technical Reports Server (NTRS)

    Gull, T. R.; Sofia, S.

    1979-01-01

    During an extensive program of direct imagery of emission nebulae, arcuate structures have been found around two stars. A well-defined shocklike structure is found about the T Orionis variable LL Ori, located to the side of the Orion Nebula. A less extensive shocklike structure is also found about the runaway star Zeta Oph. These structures can be best described in terms of distorted interstellar bubbles. A direct consequence of this interpretation is an independent estimate of the rates of mass loss for these stars.

  9. Innovative dual impression technique for patients with atrophia idiopathica mucosa oris

    PubMed Central

    Praveen, G; Agarwal, Swatantra; Nirmala, B. G; Gupta, Saurabh; Sharma, Vikas

    2015-01-01

    Atrophia idiopathica mucosa oris is an oral fibrosing disease resulting in marked rigidity and an eventual inability to open the mouth or had limited mouth opening. Patients with limited mouth opening are a common occurrence in prosthodontic practice. The majority of these patients can be treated with exercise and stretching movements before impressions are made. Some will not respond to these procedures because of facial scarring and surgical manipulation of the facial muscles. This article presents an impression procedure for overcoming difficulties encountered in such reduced mouth opening patients that can be assembled intraorally, disassembled intraorally, and reassembled extraorally. PMID:26929494

  10. Redesigning the architecture of policy-making: Engaging with Māori on nanotechnology in New Zealand.

    PubMed

    Munshi, Debashish; Kurian, Priya A; Morrison, Talei; Morrison, Sandra L

    2016-04-01

    Although there is an extensive literature on public engagement on the use of new and emerging technologies such as nanotechnology, there is little evidence of the participation of marginalised indigenous communities in processes of such engagement. How do particular cultural values and worldviews shape the perceptions of new technologies among such indigenous peoples? This article addresses this question through an analysis of the deliberations of an indigenous Māori citizens' panel on nanotechnology in Aotearoa New Zealand. An active process of public engagement with the nation's Māori stakeholders, and their conversations with nanotechnology experts, sustainability activists and Māori researchers, helps map an alternative, culture-based architecture of public engagement on policies around new technologies. The analysis is grounded in a concept of active citizenship that we term 'sustainable citizenship'. PMID:25193966

  11. Couples Work in Cultural Context: Te Ao Māori and Poststucturalist Practices Informing Counselor Training in Aotearoa New Zealand.

    PubMed

    Connor, Helene; Gremillion, Helen; Meima, Yolanda

    2016-06-01

    This article outlines key themes that appear in the teaching of poststructuralist ideas and practices for couples counseling within the Postgraduate Diploma in Counseling Program at Unitec Institute of Technology in Auckland, New Zealand, and it explores the congruence of this pedagogical approach with Māori (indigenous) understandings of relationality, collaboration, and partnership. The diploma program's curriculum includes narrative therapy and relational language-making. Themes explored in this article include: understanding (heterosexual) couple relationships as contextualized entities, deconstructing dominant discourses of coupledom, and the positioning of counselors/teachers as nonexpert. Taking each theme in turn, the authors, one of them Māori and two Pākehā (European), articulate points of alignment with Māori cultural concepts and practices. PMID:26950763

  12. Fluctuating snow line altitudes in the Hunza basin (Karakoram) using Landsat OLI imagery

    NASA Astrophysics Data System (ADS)

    Racoviteanu, Adina; Rittger, Karl; Brodzik, Mary J.; Painter, Thomas H.; Armstrong, Richard

    2016-04-01

    Snowline altitudes (SLAs) on glacier surfaces are needed for separating snow and ice as input for melt models. When measured at the end of the ablation season, SLAs are used for inferring stable-state glacier equilibrium line altitudes (ELAs). Direct measurements of snowlines are rarely possible particularly in remote, high altitude glacierized terrain, but remote sensing data can be used to separate these snow and ice surfaces. Snow lines are commonly visible on optical satellite images acquired at the end of the ablation season if the images are contrasted enough, and are manually digitized on screen using various satellite band combinations for visual interpretation, which is a time-consuming, subjective process. Here we use Landsat OLI imagery at 30 m resolution to estimate glacier SLAs for a subset of the Hunza basin in the Upper Indus in the Karakoram. Clean glacier ice surfaces are delineated using a standardized semi-automated band ratio algorithm with image segmentation. Within the glacier surface, snow and ice are separated using supervised classification schemes based on regions of interest, and glacier SLAs are extracted on the basis of these areas. SLAs are compared with estimates from a new automated method that relies on fractional snow covered area rather than on band ratio algorithms for delineating clean glacier ice surfaces, and on grain size (instead of supervised classification) for separating snow from glacier ice on the glacier surface. The two methods produce comparable snow/ice outputs. The fSCA-derived glacierized areas are slightly larger than the band ratio estimates. Some of the additional area is the result of better detection in shadows from spectral mixture analysis (true positive) while the rest is shallow water, which is spectrally similar to snow/ice (false positive). On the glacier surface, a thresholding the snow grain size image (grain size > 500μm) results in similar glacier ice areas derived from the supervised

  13. Classification of Potential Water Bodies Using Landsat 8 OLI and a Combination of Two Boosted Random Forest Classifiers

    PubMed Central

    Ko, Byoung Chul; Kim, Hyeong Hun; Nam, Jae Yeal

    2015-01-01

    This study proposes a new water body classification method using top-of-atmosphere (TOA) reflectance and water indices (WIs) of the Landsat 8 Operational Land Imager (OLI) sensor and its corresponding random forest classifiers. In this study, multispectral images from the OLI sensor are represented as TOA reflectance and WI values because a classification result using two measures is better than raw spectral images. Two types of boosted random forest (BRF) classifiers are learned using TOA reflectance and WI values, respectively, instead of the heuristic threshold or unsupervised methods. The final probability is summed linearly using the probabilities of two different BRFs to classify image pixels to water class. This study first demonstrates that the Landsat 8 OLI sensor has higher classification rate because it provides improved signal-to-ratio radiometric by using 12-bit quantization of the data instead of 8-bit as available from other sensors. In addition, we prove that the performance of the proposed combination of two BRF classifiers shows robust water body classification results, regardless of topology, river properties, and background environment. PMID:26110405

  14. Classification of Potential Water Bodies Using Landsat 8 OLI and a Combination of Two Boosted Random Forest Classifiers.

    PubMed

    Ko, Byoung Chul; Kim, Hyeong Hun; Nam, Jae Yeal

    2015-01-01

    This study proposes a new water body classification method using top-of-atmosphere (TOA) reflectance and water indices (WIs) of the Landsat 8 Operational Land Imager (OLI) sensor and its corresponding random forest classifiers. In this study, multispectral images from the OLI sensor are represented as TOA reflectance and WI values because a classification result using two measures is better than raw spectral images. Two types of boosted random forest (BRF) classifiers are learned using TOA reflectance and WI values, respectively, instead of the heuristic threshold or unsupervised methods. The final probability is summed linearly using the probabilities of two different BRFs to classify image pixels to water class. This study first demonstrates that the Landsat 8 OLI sensor has higher classification rate because it provides improved signal-to-ratio radiometric by using 12-bit quantization of the data instead of 8-bit as available from other sensors. In addition, we prove that the performance of the proposed combination of two BRF classifiers shows robust water body classification results, regardless of topology, river properties, and background environment. PMID:26110405

  15. Benefitting from differences in knowledge, practice and belief: Māori oral traditions and natural hazards science

    NASA Astrophysics Data System (ADS)

    King, D. N.; Goff, J. R.

    2010-09-01

    This paper builds upon earlier work that argued the information and experience contained within the knowledge-practice-belief complex of Mātauranga Māori [Māori knowledge] is a valuable and neglected area of information and understanding about past catastrophic events in Aotearoa/New Zealand (A/NZ). Here we map Māori oral traditions (pūrākau) that relate experience with extreme environmental disturbance (in particular, tsunamis) around the A/NZ coast, compare the findings with geo-archaeological evidence, and discuss the scientific benefits to be gained by considering pūrākau as legitimate perspectives on history. Not surprisingly, there are both differences and complementarities between traditional Māori narratives and the available geo-archaeological evidence on extreme coastal disturbances. The findings presented here raise new and important questions about accepted geographies of tsunami risk, the causes and sources of their generation, as well as reasons for the relative paucity and abundance of information in some regions. Ways in which Mātauranga Taiao [Māori environmental knowledge] and contemporary science can be combined to produce new narratives about extreme environmental disturbance along the A/NZ coastline will require not only acceptance of other ways of knowing but also open engagement with Māori that respects their rights to tell their own histories. These efforts are encouraged to revitalise and ground-truth the interpretation of traditional stories, corroborate and/or question previous scientific deductions, and improve our collective understanding of the recurring impact of tectonic, geologic and meteorological-based events across A/NZ.

  16. Application of MLST and pilus gene sequence comparisons to investigate the population structures of Actinomyces naeslundii and Actinomyces oris.

    PubMed

    Henssge, Uta; Do, Thuy; Gilbert, Steven C; Cox, Steven; Clark, Douglas; Wickström, Claes; Ligtenberg, A J M; Radford, David R; Beighton, David

    2011-01-01

    Actinomyces naeslundii and Actinomyces oris are members of the oral biofilm. Their identification using 16S rRNA sequencing is problematic and better achieved by comparison of metG partial sequences. A. oris is more abundant and more frequently isolated than A. naeslundii. We used a multi-locus sequence typing approach to investigate the genotypic diversity of these species and assigned A. naeslundii (n = 37) and A. oris (n = 68) isolates to 32 and 68 sequence types (ST), respectively. Neighbor-joining and ClonalFrame dendrograms derived from the concatenated partial sequences of 7 house-keeping genes identified at least 4 significant subclusters within A. oris and 3 within A. naeslundii. The strain collection we had investigated was an under-representation of the total population since at least 3 STs composed of single strains may represent discrete clusters of strains not well represented in the collection. The integrity of these sub-clusters was supported by the sequence analysis of fimP and fimA, genes coding for the type 1 and 2 fimbriae, respectively. An A. naeslundii subcluster was identified with both fimA and fimP genes and these strains were able to bind to MUC7 and statherin while all other A. naeslundii strains possessed only fimA and did not bind to statherin. An A. oris subcluster harboured a fimA gene similar to that of Actinomyces odontolyticus but no detectable fimP failed to bind significantly to either MUC7 or statherin. These data are evidence of extensive genotypic and phenotypic diversity within the species A. oris and A. naeslundii but the status of the subclusters identified here will require genome comparisons before their phylogenic position can be unequivocally established. PMID:21738661

  17. Metallurgy of Miura-ori: lattice theory for inhomogeneous deformations of origami tessellations

    NASA Astrophysics Data System (ADS)

    Evans, Arthur; Silverberg, Jesse; McLeod, Lauren; Cohen, Itai; Santangelo, Christian

    2014-03-01

    In nature, as well as in art, one often encounters thin materials that have been deformed by their environment or their creator into complex folded states; examples include the folds of the endoplasmic reticulum, the villi in the intestinal tract, and tessellated patterns in the ancient Japanese art of origami. One (engineering) advantage of creating a folded structure is that the geometric constraints associated with creasing imbues the construction with exotic mechanical properties, such as generating a material with a negative Poisson's ratio. Materials exhibiting novel behavior of this type, arising from the special properties of the unit cell, are generally classified as metamaterials. In this talk I consider a mechanical metamaterial known as Miura-ori, an origami tessellation pattern that displays soft modes and crystallographic defects not accounted for by a purely geometric theory of an infinitely thin material. I will discuss a method for deriving how inhomogeneous deformations arise from bending within Miura-ori, and show that this leads to a natural coherence length over which the inhomogeneity decays. Additionally, I will show how the modular nature of origami unit cells lends additional richness to the mechanical properties associated with deformation.

  18. Lethality of Sortase Depletion in Actinomyces oris Caused by Excessive Membrane Accumulation of a Surface Glycoprotein

    PubMed Central

    Wu, Chenggang; Huang, I-Hsiu; Chang, Chungyu; Reardon-Robinson, Melissa Elizabeth; Das, Asis; Ton-That, Hung

    2014-01-01

    Sortase, a cysteine-transpeptidase conserved in Gram-positive bacteria, anchors on the cell wall many surface proteins that facilitate bacterial pathogenesis and fitness. Genetic disruption of the housekeeping sortase in several Gram-positive pathogens reported thus far attenuates virulence, but not bacterial growth. Paradoxically, we discovered that depletion of the housekeeping sortase SrtA was lethal for Actinomyces oris; yet, all of its predicted cell wall-anchored protein substrates (AcaA-N) were individually dispensable for cell viability. Using Tn5-transposon mutagenesis to identify factors that upend lethality of srtA deletion, we uncovered a set of genetic suppressors harboring transposon insertions within genes of a locus encoding AcaC and a LytR-CpsA-Psr (LCP)-like protein. AcaC was shown to be highly glycosylated and dependent on LCP for its glycosylation. Upon SrtA depletion, the glycosylated form of AcaC, hereby renamed GspA, was accumulated in the membrane. Overexpression of GspA in a mutant lacking gspA and srtA was lethal; conversely, cells overexpressing a GspA mutant missing a membrane-localization domain were viable. The results reveal a unique glycosylation pathway in A. oris that is coupled to cell wall anchoring catalyzed by sortase SrtA. Significantly, this novel phenomenon of glyco-stress provides convenient cell-based assays for developing a new class of inhibitors against Gram-positive pathogens. PMID:25230351

  19. Pathogenicity of exopolysaccharide-producing Actinomyces oris isolated from an apical abscess lesion

    PubMed Central

    Yamane, K; Nambu, T; Yamanaka, T; Ishihara, K; Tatami, T; Mashimo, C; Walker, C B; Leung, K-P; Fukushima, H

    2013-01-01

    Aim To demonstrate a capacity for producing exopolysaccharides (EPSs) and an ability to form biofilm on abiotic materials of Actinomyces oris strain K20. Methodology The productivity of EPSs and the ability to form biofilm of strain K20 were evaluated by measuring viscosity of spent culture media and by scanning electron microscopy (SEM) and the biofilm assay on microtitre plates, respectively. High-performance liquid chromatography was used to determine the chemical composition of the viscous materials. To examine the role of the viscous materials attributable to the pathogenicity in this organism, the ability of strain K20 to induce abscess formation was compared in mice to that of ATCC 27044. Results The viscosity of the spent culture media of K20 was significantly higher than that of ATCC 27044. Strain K20 showed dense meshwork structures around the cells and formed biofilms on microtitre plates, whereas ATCC 27044 did not. Chemical analysis of the viscous materials revealed that they were mainly composed of neutral sugars with mannose constituting 77.5% of the polysaccharides. Strain K20 induced persistent abscesses in mice lasting at least 5 days at a concentration of 108 cells mL−1, whereas abscesses induced by ATCC 27044 healed and disappeared or decreased in size at day 5. Conclusions Strain K20 produced EPSs, mainly consisting of mannose, and formed biofilms. This phenotype might play an important role for A. oris to express virulence through the progression of apical periodontitis. PMID:22900599

  20. A qualitative analysis of Māori and Pacific smokers' views on informed choice and smoking

    PubMed Central

    Gifford, Heather; Tautolo, El-Shadan; Erick, Stephanie; Hoek, Janet; Gray, Rebecca; Edwards, Richard

    2016-01-01

    Objectives Tobacco companies frame smoking as an informed choice, a strategy that holds individuals responsible for harms they incur. Few studies have tested this argument, and even fewer have examined how informed indigenous smokers or those from minority ethnicities are when they start smoking. We explored how young adult Māori and Pacific smokers interpreted ‘informed choice’ in relation to smoking. Participants Using recruitment via advertising, existing networks and word of mouth, we recruited and undertook qualitative in-depth interviews with 20 Māori and Pacific young adults aged 18–26 years who smoked. Analyses Data were analysed using an informed-choice framework developed by Chapman and Liberman. We used a thematic analysis approach to identify themes that extended this framework. Results Few participants considered themselves well informed and none met more than the framework's initial two criteria. Most reflected on their unthinking uptake and subsequent addiction, and identified environmental factors that had facilitated uptake. Nonetheless, despite this context, most agreed that they had made an informed choice to smoke. Conclusions The discrepancy between participants' reported knowledge and understanding of smoking's risks, and their assessment of smoking as an informed choice, reflects their view of smoking as a symbol of adulthood. Policies that make tobacco more difficult to use in social settings could help change social norms around smoking and the ease with which initiation and addiction currently occur. PMID:27188813

  1. DETAILED X-RAY LINE PROPERTIES OF {theta}{sup 2} Ori A IN QUIESCENCE

    SciTech Connect

    Mitschang, Arik W.; Nichols, Joy S.; Testa, Paola; Schulz, Norbert S.; Huenemoerder, David P.

    2011-06-10

    We investigate X-ray emission properties of the peculiar X-ray source {theta}{sup 2} Ori A in the Orion Trapezium region using more than 500 ks of HETGS spectral data in the quiescent state. The amount of exposure provides tight constraints on several important diagnostics involving O, Ne, Mg, and Si line flux ratios from He-like ion triplets, resonance line ratios of the H- and He-like lines, and line widths. Accounting for the influence of the strong UV radiation field of the O9.5V star, we can now place the He-like line origin well within two stellar radii of the O-star's surface. The lines are resolved with average line widths of 341 {+-} 38 km s{sup -1}. In the framework of standard wind models, this likely implies a rather weak wind with moderate post-shock velocities. The emission measure distribution of the X-ray spectrum, as reported previously, includes very high temperature components which are not easily explained in this framework. The X-ray properties are also not consistent with coronal emissions from an unseen low-mass companion nor with typical signatures from colliding wind interactions. The properties are more consistent with X-ray signatures observed in the massive Trapezium star {theta}{sup 1} Ori C which has recently been successfully modeled with a magnetically confined wind model.

  2. A Systematic Review of Methods and Procedures Used in Ecological Momentary Assessments of Diet and Physical Activity Research in Youth: An Adapted STROBE Checklist for Reporting EMA Studies (CREMAS)

    PubMed Central

    2016-01-01

    Background Ecological momentary assessment (EMA) is a method of collecting real-time data based on careful timing, repeated measures, and observations that take place in a participant’s typical environment. Due to methodological advantages and rapid advancement in mobile technologies in recent years, more studies have adopted EMA in addressing topics of nutrition and physical activity in youth. Objective The aim of this systematic review is to describe EMA methodology that has been used in studies addressing nutrition and physical activity in youth and provide a comprehensive checklist for reporting EMA studies. Methods Thirteen studies were reviewed and analyzed for the following 5 areas of EMA methodology: (1) sampling and measures, (2) schedule, (3) technology and administration, (4) prompting strategy, and (5) response and compliance. Results Results of this review showed a wide variability in the design and reporting of EMA studies in nutrition and physical activity among youth. The majority of studies (69%) monitored their participants during one period of time, although the monitoring period ranged from 4 to 14 days, and EMA surveys ranged from 2 to 68 times per day. More than half (54%) of the studies employed some type of electronic technology. Most (85%) of the studies used interval-contingent prompting strategy. For studies that utilized electronic devices with interval-contingent prompting strategy, none reported the actual number of EMA prompts received by participants out of the intended number of prompts. About half (46%) of the studies failed to report information about EMA compliance rates. For those who reported, compliance rates ranged from 44-96%, with an average of 71%. Conclusions Findings from this review suggest that in order to identify best practices for EMA methodology in nutrition and physical activity research among youth, more standardized EMA reporting is needed. Missing the key information about EMA design features and participant

  3. An indigenous approach to explore health-related experiences among Māori parents: the Pukapuka Hauora asthma study

    PubMed Central

    2013-01-01

    Background The prevalence of asthma for Indigenous New Zealand Māori is amongst the highest in the world. Recent evidence shows ethnic differences in asthma symptom prevalence in New Zealand have widened, with asthma symptoms and hospitalisation rates consistently higher for Māori across all age-groups, especially children and adolescents. This paper: outlines our qualitative, longitudinal research exploring the practical issues Māori children and their families face trying to achieve optimum asthma outcomes; details the research methods used within this study; and discusses the process evaluation findings of the features that made this approach successful in engaging and retaining participants in the study. Methods Thirty-two Māori families were recruited using a Kaupapa Māori (Māori way) Research approach. Each participated in a series of four in-depth interviews that were carried out at seasonal intervals over the course of one year. Families also took part in an interviewer-administered questionnaire and participated in a Photovoice exercise. All interviews were digitally recorded, transcribed verbatim and independently coded by two researchers. The research team then conducted the analysis and theme development. The questionnaires were analysed separately, with explanations for findings explored within the qualitative data. Results The methodology produced a 100 percent retention rate of the participating families over the course of the follow-up. This was attributed to the research collaboration, the respectful research relationships established with families, and the families’ judgement that the methods used enabled them to tell their stories. The acceptability of the methodology will add to the validity and trustworthiness of the findings. Conclusion Given the extent and persistence of ethnic disparities in childhood asthma management, it is imperative that an indigenous approach be taken to understanding the core issues facing Māori families. By

  4. Minicircle-oriP-IFNγ: A Novel Targeted Gene Therapeutic System for EBV Positive Human Nasopharyngeal Carcinoma

    PubMed Central

    Xu, Zumin; Yang, Shiping; Yan, Haijiao; Tan, Li; Meng, Xiangqi; Ying, Xiaofang; Liu, Ranyi; Kang, Tiebang; Huang, Wenlin

    2011-01-01

    Background Nonviral vectors are attractively used for gene therapy owing to their distinctive advantages. Our previous study has demonstrated that transfer of human IFNγ gene into nasopharyngeal carcinoma (NPC) by using a novel nonviral vector, minicircle (mc), under the control of cytomegalovirus (CMV) promoter was effective to inhibit tumor growth. However, therapies based on CMV promoter cannot express the targeted genes in cancer tissues. Previous studies indicated that the development of human NPC was closely associated with Epstein-Barr virus (EBV) and demonstrated the transcriptional enhancer function of oriP when bound by EBV protein. Therefore, the present study is to explore the targeted gene expression and the anti-tumor effect of a novel tumor-specific gene therapeutic system (mc-oriP-IFNγ) in which the transgene expression was under the transcriptional regulation of oriP promoter. Methodology/Principal Findings Dual-luciferase reporter assay and ELISA were used to assess the expression of luciferase and IFNγ. WST assay was used to assess the cell proliferation. RT-PCR was used to detect the mRNA level of EBNA1. RNAi was used to knockdown the expression of EBNA1. NPC xenograft models in nude mice were used to investigate the targeted antitumor efficacy of mc-oriP-IFNγ. Immunohistochemistry was used to detect the expression and the activity of the IFNγ in tumor sections. Our results demonstrated that mc-oriP vectors mediated comparable gene expression and anti-proliferative effect in the EBV-positive NPC cell line C666-1 compared to mc-CMV vectors. Furthermore, mc-oriP vectors exhibited much lower killing effects on EBV-negative cell lines compared to mc-CMV vectors. The targeted expression of mc-oriP vectors was inhibited by EBNA1-siRNA in C666-1. This selective expression was corroborated in EBV-positive and -negative tumor models. Conclusions/Significance This study demonstrates the feasibility of mc-oriP-IFNγ as a safe and highly effective

  5. The significance of socially-assigned ethnicity for self-identified Māori accessing and engaging with primary healthcare in New Zealand.

    PubMed

    Reid, Jennifer; Cormack, Donna; Crowe, Marie

    2016-03-01

    Despite increased focus in New Zealand on reducing health inequities between Māori and New Zealand European ethnic groups, research on barriers and facilitators to primary healthcare access for Māori remains limited. In particular, there has been little interrogation of the significance of social-assignment of ethnicity for Māori in relation to engagement with predominantly non-Māori primary healthcare services and providers. A qualitative study was undertaken with a subsample (n = 40) of the broader Hauora Manawa Study to examine experiences of accessing and engaging with primary healthcare among adult urban Māori. Thematic analysis of in-depth interviews identified that participants perceived social-assignment as New Zealand European as an efficacious form of capital when interacting with predominantly non-Māori health professionals. Skin colour that was 'white' or was perceived to identify Māori as belonging to the 'dominant' New Zealand European ethnic group was reported as broadly advantageous and protective. In contrast, social-assignment as Māori was seen to be associated with risk of exposure to differential and discriminatory healthcare. Reducing the negative impacts of racialisation in a (neo)colonial society where 'White' cultural capital dominates requires increased recognition of the health-protective advantages of 'White' privilege and concomitant risks associated with socially-assigned categorisation of ethnicity as non-'White'. PMID:25645659

  6. Implementing the Biopharmaceutics Classification System in Drug Development: Reconciling Similarities, Differences, and Shared Challenges in the EMA and US-FDA-Recommended Approaches.

    PubMed

    Cardot, J-M; Garcia Arieta, A; Paixao, P; Tasevska, I; Davit, B

    2016-07-01

    The US-FDA recently posted a draft guideline for industry recommending procedures necessary to obtain a biowaiver for immediate-release oral dosage forms based on the Biopharmaceutics Classification System (BCS). This review compares the present FDA BCS biowaiver approach, with the existing European Medicines Agency (EMA) approach, with an emphasis on similarities, difficulties, and shared challenges. Some specifics of the current EMA BCS guideline are compared with those in the recently published draft US-FDA BCS guideline. In particular, similarities and differences in the EMA versus US-FDA approaches to establishing drug solubility, permeability, dissolution, and formulation suitability for BCS biowaiver are critically reviewed. Several case studies are presented to illustrate the (i) challenges of applying for BCS biowaivers for global registration in the face of differences in the EMA and US-FDA BCS biowaiver criteria, as well as (ii) challenges inherent in applying for BCS class I or III designation and common to both jurisdictions. PMID:27116020

  7. V 1162 Ori: A multiperiodic delta Scuti star with variable period and amplitude

    NASA Astrophysics Data System (ADS)

    Arentoft, T.; Sterken, C.; Handler, G.; Freyhammer, L. M.; Bruch, A.; Niarchos, P.; Gazeas, K.; Manimanis, V.; Van Cauteren, P.; Poretti, E.; Dawson, D. W.; Liu, Z. L.; Zhou, A. Y.; Du, B. T.; Shobbrook, R. R.; Garrido, R.; Fried, R.; Akan, M. C.; Ibanoglu, C.; Evren, S.; Tas, G.; Johnson, D.; Blake, C.; Kurtz, D. W.

    2001-08-01

    We present the results of multisite observations of the delta Scuti star V 1162 Ori. The observations were done in the period October 1999-May 2000, when 18 telescopes at 15 observatories were used to collect 253 light extrema during a total of 290 hours of time-series observations. The purpose of the observations was to investigate amplitude and period variability previously observed in this star, and to search for low-amplitude frequencies. We detect, apart from the main frequency and its two first harmonics, four additional frequencies in the light curves, all with low amplitudes (1-3 mmag). Combining the present data set with data obtained in 1998-99 at ESO confirms the new frequencies and reveals the probable presence of yet another pulsational frequency. All five low-amplitude frequencies are statistically significant in the data, but at least one of them (f5) suffers from uncertainty due to aliasing. Using colour photometry we find evidence for a radial main frequency (f1), while most or all low-amplitude frequencies are likely non-radial. We show that the main frequency of V 1162 Ori has variable amplitude and period/phase, the latter is also displayed in the O-C diagram from light extrema. The amplitude variability in our data is cyclic with a period of 282 d and a range of nearly 20 mmag, but earlier amplitude values quoted in the literature cannot be explained by this cyclic variation. O-C analysis including data from the literature show that the period of V 1162 Ori displays a linear period change as well as sudden or cyclic variations on a time scale similar to that of the amplitude variations. Based on observations obtained at the South African Astronomical Observatory (SAAO), Athens University and Kryonerion Observatories, European Southern Observatories (ESO: applications ESO 62H-0110, 64H-0065 and 64L-0182), Laboratório Nacional de Astrofísica (Brazil), Xinglong, Beersel Hills, Ege University, San Pedro Martir, Merate, Mt. Laguna, Siding Spring

  8. A fresh perspective on comparing the FDA and the CHMP/EMA: approval of antineoplastic tyrosine kinase inhibitors.

    PubMed

    Shah, Rashmi R; Roberts, Samantha A; Shah, Devron R

    2013-09-01

    We compared and determined the reasons for any differences in the review and approval times of tyrosine kinase inhibitors (TKIs) by the US Food and Drug Administration (FDA) and the European EMA/CHMP. Applications for these novel cancer drugs were submitted to them within a mean of 31.2 days of each other, providing a fair basis for comparison. The FDA had granted priority review to 12 TKIs but the EMA/CHMP did not grant the equivalent accelerated assessment to any. The FDA granted accelerated approvals to six (38%) and CHMP granted (the equivalent) conditional approvals to four (29%) of these agents. On average, the review and approval times were 205.3 days in the US compared with 409.6 days in the European Union (EU). The active review times, however, were comparable (225.4 days in the EU and 205.3 days in the US). Since oncology drug development lasts about 7 years, the 20 days difference in review times between the two agencies is inconsequential. Clock stops during review and the time required to issue an approval had added the extra 184.2 days to review time in the EU. We suggest possible solutions to expedite the EU review and approval processes. However, post-marketing emergence of adverse efficacy and safety data on gefitinib and lapatinib, respectively, indicate potential risks of expedited approvals. We challenge the widely prevalent myth that early approval translates into early access or beneficial impact on public health. Both the agencies collaborate closely but conduct independent assessments and make decisions based on distinct legislation, procedures, precedents and societal expectations. PMID:23362829

  9. The Protective Influence of Family Connectedness, Ethnic Identity, and Ethnic Engagement for New Zealand Ma¯ori Adolescents

    ERIC Educational Resources Information Center

    Stuart, Jaimee; Jose, Paul E.

    2014-01-01

    The present study examined the associations among family connectedness, ethnic identity, and ethnic engagement on changes in well-being over time for the understudied population of Ma¯ori (indigenous New Zealand) youth. Data were collected as part of a longitudinal study of youth connectedness in New Zealand using self-report measures at 3…

  10. Primordial germ cells in the dorsal mesentery of the chicken embryo demonstrate left–right asymmetry and polarized distribution of the EMA1 epitope

    PubMed Central

    Hen, Gideon; Friedman-Einat, Miriam; Sela-Donenfeld, Dalit

    2014-01-01

    Despite the importance of the chicken as a model system, our understanding of the development of chicken primordial germ cells (PGCs) is far from complete. Here we characterized the morphology of PGCs at different developmental stages, their migration pattern in the dorsal mesentery of the chicken embryo, and the distribution of the EMA1 epitope on PGCs. The spatial distribution of PGCs during their migration was characterized by immunofluorescence on whole-mounted chicken embryos and on paraffin sections, using EMA1 and chicken vasa homolog antibodies. While in the germinal crescent PGCs were rounded and only 25% of them were labeled by EMA1, often seen as a concentrated cluster on the cell surface, following extravasation and migration in the dorsal mesentery PGCs acquired an elongated morphology, and 90% exhibited EMA1 epitope, which was concentrated at the tip of the pseudopodia, at the contact sites between neighboring PGCs. Examination of PGC migration in the dorsal mesentery of Hamburger and Hamilton stage 20–22 embryos demonstrated a left–right asymmetry, as migration of cells toward the genital ridges was usually restricted to the right, rather than the left, side of the mesentery. Moreover, an examination of another group of cells that migrate through the dorsal mesentery, the enteric neural crest cells, revealed a similar preference for the right side of the mesentery, suggesting that the migratory pathway of PGCs is dictated by the mesentery itself. Our findings provide new insights into the migration pathway of PGCs in the dorsal mesentery, and suggest a link between EMA1, PGC migration and cell–cell interactions. These findings may contribute to a better understanding of the mechanism underlying migration of PGCs in avians. PMID:24697411

  11. Dust around young stars. Observations of the polarization of UX Ori in deep minima

    SciTech Connect

    Voshchinnikov, N.V.; Grinin, V.P.; Kiselev, N.N.; Minikulov, N.K.

    1988-09-01

    Photometric and polarimetric monitoring observations of UX Ori begun in 1986 in the Crimea and Bolivia have resulted in the observation of two deep minima of the brightness during which a growth of the linear polarization (to approx. =7%) was observed, together with a tendency for the circular polarization to increase (up to approx. =1%). Analysis of the observational data shows that the main source of the polarized radiation in the deep minima is the emission of the star scattered by grains of circumstellar dust. On the basis of Mie's theory for a polydisperse graphite-silicate mixtures of particles the optical properties of ellipsoidal dust envelopes have been calculated and a model of the Algol-like minimum constructed.

  12. VizieR Online Data Catalog: Magnetic properties of ω Ori (Neiner+, 2012)

    NASA Astrophysics Data System (ADS)

    Neiner, C.; Grunhut, J. H.; Petit, V.; Ud-Doula, A.; Wade, G. A.; Landstreet, J.; de Batz, B.; Cochard, F.; Gutierrez-Soto, J.; Huat, A.-L.

    2013-04-01

    High-resolution (R~68000) circular polarization (Stokes V) spectra of omega Ori were obtained with the ESPaDOnS spectropolarimeter, mounted on the 3.6-m Canada-France-Hawaii Telescope (CFHT) in Hawaii, and the Narval spectropolarimeter, mounted on the 2-m Bernard Lyot Telescope (TBL) in France, as part of the commissioning ESPaDOnS runs (04BE80, 04BE37 and 04BD51), PI programmes (Neiner on Narval L062N05 and L072N08, and Landstreet on ESPaDOnS 07BC08) and of the MiMeS project (Wade on ESPaDOnS 08BP13). Six different epochs of spectropolarimetric data were obtained in 2004, 2007 January, 2007 November, 2008 January, 2008 October and 2009 January that resulted in 125 polarimetric observations. (1 data file).

  13. Analysis of vegetation by the application of a physically-based atmospheric correction algorithm to OLI data: a case study of Leonessa Municipality, Italy

    NASA Astrophysics Data System (ADS)

    Mei, Alessandro; Manzo, Ciro; Petracchini, Francesco; Bassani, Cristiana

    2016-04-01

    Remote sensing techniques allow to estimate vegetation parameters related to large areas for forest health evaluation and biomass estimation. Moreover, the parametrization of specific indices such as Normalized Difference Vegetation Index (NDVI) allows to study biogeochemical cycles and radiative energy transfer processes between soil/vegetation and atmosphere. This paper focuses on the evaluation of vegetation cover analysis in Leonessa Municipality, Latium Region (Italy) by the use of 2015 Landsat 8 applying the OLI@CRI (OLI ATmospherically Corrected Reflectance Imagery) algorithm developed following the procedure described in Bassani et al. 2015. The OLI@CRI is based on 6SV radiative transfer model (Kotchenova et al., 2006) ables to simulate the radiative field in the atmosphere-earth coupled system. NDVI was derived from the OLI corrected image. This index, widely used for biomass estimation and vegetation analysis cover, considers the sensor channels falling in the near infrared and red spectral regions which are sensitive to chlorophyll absorption and cell structure. The retrieved product was then spatially resampled at MODIS image resolution and then validated by the NDVI of MODIS considered as reference. The physically-based OLI@CRI algorithm also provides the incident solar radiation at ground at the acquisition time by 6SV simulation. Thus, the OLI@CRI algorithm completes the remote sensing dataset required for a comprehensive analysis of the sub-regional biomass production by using data of the new generation remote sensing sensor and an atmospheric radiative transfer model. If the OLI@CRI algorithm is applied to a temporal series of OLI data, the influence of the solar radiation on the above-ground vegetation can be analysed as well as vegetation index variation.

  14. KIR Diversity in Māori and Polynesians: Populations in which HLA-B is not a Significant KIR Ligand

    PubMed Central

    Nemat-Gorgani, Neda; Edinur, Hisham A.; Hollenbach, Jill A.; Traherne, James A.; Dunn, Paul P. J.; Chambers, Geoffrey K.; Parham, Peter; Norman, Paul J.

    2014-01-01

    HLA class I molecules and killer cell immunoglobulin-like receptors (KIR) form a diverse system of ligands and receptors that individualize human immune systems in ways that improve the survival of individuals and populations. Human settlement of Oceania by island-hopping East and Southeast Asian migrants started ~3,500 years ago. Subsequently, New Zealand was reached ~750 years ago by ancestral Māori. To examine how this history impacted KIR and HLA diversity, and their functional interaction, we defined at high resolution the allelic and haplotype diversity of the 13 expressed KIR genes in 49 Māori and 34 Polynesians. Eighty KIR variants, including four ‘new’ alleles, were defined; as were 35 centromeric and 22 telomeric KIR region haplotypes, which combine to give >50 full-length KIR haplotypes. Two new and divergent variant KIR form part of a telomeric KIR haplotype, which appears derived from Papua New Guinea and was probably obtained by the Asian migrants en route to Polynesia. Māori and Polynesian KIR are very similar, but differ significantly from African, European, Japanese and Amerindian KIR. Māori and Polynesians have high KIR haplotype diversity with corresponding allotype diversity being maintained throughout the KIR locus. Within the population each individual has a unique combination of HLA class I and KIR. Characterizing Māori and Polynesians is a paucity of HLA-B allotypes recognized by KIR. Compensating for this deficiency are high frequencies (>50%) of HLA-A allotypes recognized by KIR. These HLA-A allotypes are ones that modern humans likely acquired from archaic humans at a much earlier time. PMID:25139336

  15. Ethnic density and area deprivation: neighbourhood effects on Māori health and racial discrimination in Aotearoa/New Zealand.

    PubMed

    Bécares, Laia; Cormack, Donna; Harris, Ricci

    2013-07-01

    Some studies suggest that ethnic minority people are healthier when they live in areas with a higher concentration of people from their own ethnic group, a so-called ethnic density effect. To date, no studies have examined the ethnic density effect among indigenous peoples, for whom connections to land, patterns of settlement, and drivers of residential location may differ from ethnic minority populations. The present study analysed the Māori sample from the 2006/07 New Zealand Health Survey to examine the association between increased Māori ethnic density, area deprivation, health, and experiences of racial discrimination. Results of multilevel regressions showed that an increase in Māori ethnic density was associated with decreased odds of reporting poor self-rated health, doctor-diagnosed common mental disorders, and experienced racial discrimination. These associations were strengthened after adjusting for area deprivation, which was consistently associated with increased odds of reporting poor health and reports of racial discrimination. Our findings show that whereas ethnic density is protective of the health and exposure to racial discrimination of Māori, this effect is concealed by the detrimental effect of area deprivation, signalling that the benefits of ethnic density must be interpreted within the current socio-political context. This includes the institutional structures and racist practices that have created existing health and socioeconomic inequities in the first place, and maintain the unequal distribution of concentrated poverty in areas of high Māori density. Addressing poverty and the inequitable distribution of socioeconomic resources by ethnicity and place in New Zealand is vital to improving health and reducing inequalities. Given the racialised nature of access to goods, services, and opportunities within New Zealand society, this also requires a strong commitment to eliminating racism. Such commitment and action will allow the benefits

  16. The importance of accurate repair of the orbicularis oris muscle in the correction of unilateral cleft lip.

    PubMed

    Park, C G; Ha, B

    1995-09-01

    Most of the attempts and efforts in cleft lip repair have been directed toward the skin incision. The importance of the orbicularis oris muscle repair has been emphasized in recent years. The well-designed skin incision with simple repair of the orbicularis oris muscle has produced a considerable improvement in the appearance of the upper lip; however, the repaired upper lip seems to change its shape abnormally in motion and has a tendency to be distorted with age if the orbicularis oris muscle is not repaired precisely and accurately. Following the dissection of the normal upper lip and unilateral cleft lip in cadavers, we could find two different components in the orbicularis oris muscle, a superficial and a deep component. One is a retractor and the other is a constrictor of the lip. They have antagonistic actions to each other during lip movement. We also can identify these two different components of the muscle in the cleft lip patient during operation. We thought inaccurate and mixed connection between these two different functional components could make the repaired lip distorted and unbalanced, which would get worse during growth. By identification and separate repair of the two different muscular components of the orbicularis oris muscle (i.e., repair of the superficial and deep components on the lateral side with the corresponding components on the medial side), better results in the dynamic and three-dimensional configuration of the upper lip can be achieved, and unfavorable distortion can be avoided as the patients grow.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:7652051

  17. Improving the frequency of high spatial resolution leaf area index maps using Landsat OLI and Sentinel-2 MSI

    NASA Astrophysics Data System (ADS)

    Li, S.; Ganguly, S.; Dungan, J. L.; Zhang, G.; Ju, J.; Claverie, M.

    2015-12-01

    The European Space Agency's Sentinel-2 mission successfully launched the first of two satellites in June, 2015. Sentinel 2A's MSI instrument is now providing optical data similar to Landsat 8's OLI imagery and, with its global repeat of 10 days, has the potential to increase the availability of 30m resolution high level products such as leaf area index (LAI). Prior to the launch of S-2A, we simulated MSI imagery using EO-1 Hyperion data and estimated green LAI using an algorithm based on canopy spectral invariants theory. Comparison of the resulting LAI maps resulting from the simulated MSI and corresponding maps derived from OLI data showed a RMSE of 0.1875. Uncertainty bounds on actual MSI data promise to be narrower because of the superior signal-to-noise ratio of MSI. A workflow for the production of LAI and other high level products including data ingest, BRDF correction, cloud masking and atmospheric correction is being developed using the NASA Earth Exchange (NEX) and will improve the capability to examine seasonal changes in canopy LAI.

  18. Characterizing the Uncertainty of Vegetation Moisture Content Retrieval through Radiative Transfer Model Inversion with Landsat 8 OLI Data

    NASA Astrophysics Data System (ADS)

    Boren, E. J.; Boschetti, L.; Johnson, D. M.

    2015-12-01

    Systematic monitoring of vegetation moisture content (VMC) would improve early warning systems for conditions of water-stress (leading to decreased crop yield, increased fire risk, and amplified pest outbreaks and wildfires) as well as increase the accuracy of the retrieval of biomass consumed from satellite fire radiative power (FRP) (Smith et al. 2013). VMC is defined as the ratio between water content (weight of live biomass - weight of dry biomass) and either dry or living biomass weight. Despite the wide range of potential applications for systematic estimates of VMC, no VMC thematic product is currently generated (Yebra et al. 2013). The present paper presents the initial steps toward developing a modeling framework for the retrieval of VMC. A suite of field and laboratory measurements were collected weekly for various crop species throughout the 2014 and 2015 summer growing periods in the Southern Palouse region of Idaho. Measurements included: VMC, leaf area index (LAI), soil moisture content, leaf area, canopy height, and ground measured spectroradiometer data (350-2500 nm) of leaf and canopy reflectance. Field measurements were coincident with Landsat 8 OLI overpasses. PROSPECT- 5 and SAIL radiative transfer models were used to generate spectral signatures, simulating a variety of conditions and constrained by field and laboratory observations. Landsat 8 OLI data from coincident overpasses were used in an inversion approach to characterize VMC from field sites. The sources of uncertainty were characterized and examined for future model ensemble development.

  19. Research misconduct and its federal regulation: the origin and history of the Office of Research Integrity--with personal views by ORI's former associate director for investigative oversight.

    PubMed

    Price, Alan R

    2013-01-01

    Misconduct in science and research became the subject of significant public attention and Congressional scrutiny beginning in the 1970s and 1980s, which led to public statements, policies, and finally formal federal regulations being promulgated by Government agency officials. The Office of Research Integrity (ORI) in the Department of Health and Human Services was a major and very visible component of this process. This article provides a detailed history of the first two decades of federal research misconduct regulations and of ORI's history (under extremely difficult and unfair challenges), including personal views by the former ORI chief investigator and associate director. PMID:24028479

  20. An investigation of the magnetic properties of the classical Be star ω Ori by the MiMeS Collaboration

    NASA Astrophysics Data System (ADS)

    Neiner, C.; Grunhut, J. H.; Petit, V.; ud-Doula, A.; Wade, G. A.; Landstreet, J.; de Batz, B.; Cochard, F.; Gutiérrez-Soto, J.; Huat, A.-L.

    2012-11-01

    One hundred and twenty-five new high-precision spectropolarimetric observations have been obtained with ESPaDOnS (Eschelle Spectro-Polarimetric Device for the Observation of Stars) at the Canada-France-Hawaii Telescope and Narval at Télescope Bernard Lyot to investigate the magnetic properties of the classical Be star ω Ori. No Stokes V signatures are detected in our polarimetric data. Measurements of the longitudinal magnetic field, with a median error bar of 30 G, and direct modelling of the mean least-squares deconvolved Stokes V profiles yield no evidence for a dipole magnetic field with polar surface strength greater than ˜80 G. We are therefore unable to confirm the presence of the magnetic field previously reported by Neiner et al. However, our spectroscopic data reveal the presence of periodic emission variability in H and He lines analogous to that reported by Neiner et al., considered as evidence of magnetically confined circumstellar plasma clouds. We revisit this hypothesis in light of the new magnetic analysis. Calculation of the magnetospheric Kepler radius RK and confinement parameter η* indicates that a surface dipole magnetic field with a polar strength larger than 63 G is sufficient to form of a centrifugally supported magnetosphere around ω Ori. Our data are not sufficiently sensitive to detect fields of this magnitude; we are therefore unable to confirm or falsify the magnetic cloud hypothesis. Based on our results, we examine three possible scenarios that could potentially explain the behaviour of ω Ori: (1) that no significant magnetic field is (or was) present in ω Ori, and that the observed phenomena have their origin in another mechanism or mechanisms than corotating clouds. We are, however, unable to identify one; (2) that ω Ori hosts an intermittent magnetic field produced by dynamo processes; however, no such process has been found so far to work in massive stars and especially to produce a dipolar field; and (3) that ω Ori

  1. DRAMATIC EVOLUTION OF THE DISK-SHAPED SECONDARY IN THE ORION TRAPEZIUM STAR {theta}{sup 1} Ori B{sub 1} (BM Ori): MOST SATELLITE OBSERVATIONS

    SciTech Connect

    Windemuth, Diana; Herbst, William; Tingle, Evan; Fuechsl, Rachel; Kilgard, Roy; Pinette, Melanie; Templeton, Matthew; Henden, Arne

    2013-05-01

    The eclipsing binary {theta}{sup 1} Orionis B{sub 1}, variable star designation BM Ori, is the faintest of the four well-known Trapezium stars at the heart of the Orion Nebula. The primary is a B3 star ({approx}6 M{sub Sun }) but the nature of the secondary ({approx}2 M{sub Sun }) has long been mysterious, since the duration and shape of primary eclipse are inappropriate for any sort of ordinary star. Here we report nearly continuous photometric observations obtained with the MOST satellite over {approx}4 cycles of the 6.47 d binary period. The light curve is of unprecedented quality, revealing a deep, symmetric primary eclipse as well as a clear reflection effect and secondary eclipse. In addition, there are other small disturbances, some of which repeat at the same phase over the four cycles monitored. The shape of the primary light curve has clearly evolved significantly over the past 40 years. While its overall duration and depth have remained roughly constant, the slopes of the descent and ascent phases are significantly shallower now than in the past and its distinctive flat-bottomed ''pseudo-totality'' is much less obvious or even absent in the most recent data. We further demonstrate that the primary eclipse was detected at X-ray wavelengths during the Chandra Orion Ultradeep Project (COUP) study. The light curve continues to be well modeled by a self-luminous and reflective disk-shaped object seen nearly edge-on orbiting the B3 primary. The dramatic change in shape over four decades is modeled as an opacity variation in a tenuous outer envelope or disk of the secondary object. We presume that the secondary is an extremely young protostar at an earlier evolutionary phase than can be commonly observed elsewhere in the Galaxy and that the opacity variations observed are related to its digestion of some accreted matter over the last 50-100 years. Indeed, this object deserves continued observational and theoretical attention as the youngest known eclipsing

  2. Ground-based radiometric calibration of the Landsat 8 Operational Land Imager (OLI) using in situ techniques

    NASA Astrophysics Data System (ADS)

    Czapla-Myers, J.

    2013-12-01

    Landsat 8 was successfully launched from Vandenberg Air Force Base in California on 11 February 2013, and was placed into the orbit previously occupied by Landsat 5. Landsat 8 is the latest platform in the 40-year history of the Landsat series of satellites, and it contains two instruments that operate in the solar-reflective and the thermal infrared regimes. The Operational Land Imager (OLI) is a pushbroom sensor that contains eight multispectral bands ranging from 400-2300 nm, and one panchromatic band. The spatial resolution of the multispectral bands is 30 m, which is similar to previous Landsat sensors, and the panchromatic band has a 15-m spatial resolution, which is also similar to previous Landsat sensors. The 12-bit radiometric resolution of OLI improves upon the 8-bit resolution of the Enhanced Thematic Mapper Plus (ETM+) onboard Landsat 7. An important requirement for the Landsat program is the long-term radiometric continuity of its sensors. Ground-based vicarious techniques have been used for over 20 years to determine the absolute radiometric calibration of sensors that encompass a wide variety of spectral and spatial characteristics. This work presents the early radiometric calibration results of Landsat 8 OLI that were obtained using the traditional reflectance-based approach. University of Arizona personnel used five sites in Arizona, California, and Nevada to collect ground-based data. In addition, a unique set of in situ data were collected in March 2013, when Landsat 7 and Landsat 8 were observing the same site within minutes of each other. The tandem overfly schedule occurred while Landsat 8 was shifting to the WRS-2 orbital grid, and lasted only a few days. The ground-based data also include results obtained using the University of Arizona's Radiometric Calibration Test Site (RadCaTS), which is an automated suite of instruments located at Railroad Valley, Nevada. The results presented in this work include a comparison to the L1T at

  3. Scientific considerations concerning the EMA change in the definition of "dose" of the BCS-based biowaiver guideline and implications for bioequivalence.

    PubMed

    Daousani, Chrysa; Macheras, Panos

    2015-01-30

    This work discusses the scientific aspects of the definition of dose as the 'highest single oral IR dose' recommended for administration in the SmPC (summary of product characteristics) in the current European Medicines Agency (EMA) 2010 Guideline, for the purpose of biopharmaceutics classification system (BCS)-based biowaiver decision making. Analysis of theoretical and experimental data dealing with drug dissolution and biopharmaceutic drug classification reveals that the drug dose is an important parameter for both drug dissolution and biopharmaceutic classification. The relevant implications for the dose considerations in bioequivalence studies are also discussed briefly. It is suggested that the concept of "the highest single dose oral IR dose recommended for administration in the SmPC" of the EMA 2010 Guideline be abolished. It is advisable, each dose strength be considered separately i.e., whether or not it meets the solubility-dissolution regulatory criteria. PMID:25437115

  4. Interactions effectives, théories de champ moyen masses et rayons nucléaires

    NASA Astrophysics Data System (ADS)

    Meyer, J.

    2003-05-01

    Effective interactions, mean field theories, masses and nuclear radii A review of effective interactions used in mean field theories for the description of properties of atomic nuclei is presented. Relativistic as well as non relativistic theories are discussed with a special attention to the cases where their results are very different. We will concentrate on the effective forces built up to investigate the nuclear medium in extreme conditions. Masses and r.m.s. radii along long chain of isotopes will be discussed. Large deformations, as observed in the fission of heavy nuclei, and exotic neutron rich nuclei will be taken as examples of these extreme conditions. Le principal propos de cet ouvrage est : (i) de passer en revue les outils théoriques utilisés sous le sigle ”théories microscopiques de champ moyen ”. Sans entrer dans le détail des formalismes (le lecteur sera systématiquement renvoyé ”pour en savoir plus ” à des cours plus complets qui ont déjà été donnés dans le passé à l'École Joliot-Curie) il s'agira surtout de préciser le contexte, les hypothèses et les approximations qui se cachent sous les sigles : Hartree-Fock (HF), Hartree-Fock-Bogoliubov (HFB), Approximation BCS (HFBCS), Champ Moyen Relativiste (RMF), Approximations Hartree (RH), Hartree-Fock (RHF) et Hartree-Bogoliubov (RHB) Relativistes, ... ; (ii) de présenter la procédure générale et les ingrédients qui entrent dans la construction d'une interaction effective, élément de base de ces théories dont l'intérêt majeur est de livrer des résultats comparables à l'expérience sans paramètre ajustable ; (iii) de discuter des effets des différentes approximations ou interactions effectives sur des résultats expérimentaux pris dans diverses zones de noyaux. Ces discussions seront surtout centrées sur les masses et les rayons des noyaux mais aussi sur certaines quantités plus significatives que l'on peut en extraire : énergies de séparation de deux neutrons

  5. X-ray, UV and optical analysis of supergiants: ɛ Ori

    NASA Astrophysics Data System (ADS)

    Puebla, Raul E.; Hillier, D. John; Zsargó, Janos; Cohen, David H.; Leutenegger, Maurice A.

    2016-03-01

    We present a multi-wavelength (X-ray to optical) analysis, based on non-local thermodynamic equilibrium photospheric+wind models, of the B0 Ia-supergiant: ɛ Ori. The aim is to test the consistency of physical parameters, such as the mass-loss rate and CNO abundances, derived from different spectral bands. The derived mass-loss rate is {dot {M}} / {√{f_{∞}}} {˜} 1.6 × 10-6 M⊙ yr-1 where f∞ is the volume filling factor. However, the S IV λλ1062,1073 profiles are too strong in the models; to fit the observed profiles it is necessary to use f∞ <0.01. This value is a factor of 5 to 10 lower than inferred from other diagnostics, and implies {dot{M}} ≲ 1 × 10^{-7} M⊙ yr-1. The discrepancy could be related to porosity-vorosity effects or a problem with the ionization of sulphur in the wind. To fit the UV profiles of N V and O VI it was necessary to include emission from an interclump medium with a density contrast (ρcl/ρICM) of ˜100. X-ray emission in H/He like and Fe L lines was modelled using four plasma components located within the wind. We derive plasma temperatures from 1 × 106 to 7 × 106 K, with lower temperatures starting in the outer regions (R0 ˜ 3-6 R*), and a hot component starting closer to the star (R0 ≲ 2.9 R*). From X-ray line profiles we infer {dot{M}} < 4.9 × 10-7 M⊙ yr-1. The X-ray spectrum (≥0.1 kev) yields an X-ray luminosity LX ˜ 2.0 × 10-7Lbol, consistent with the superion line profiles. X-ray abundances are in agreement with those derived from the UV and optical analysis: ɛ Ori is slightly enhanced in nitrogen and depleted in carbon and oxygen, evidence for CNO processed material.

  6. ori science education in Aotearoa New Zealand. He pūtea whakarawe: aspirations and realities

    NASA Astrophysics Data System (ADS)

    Wood, Anaru; Lewthwaite, Brian

    2008-09-01

    This article reports on the first two phases of a multiphase science education development project in predominantly Māori kura (school communities) in the central region of the North Island of Aotearoa New Zealand. The development project in its entirety employs an action research methodology and by so doing endeavors to support the improvement of science education delivery in accordance with school community aspirations. The full project (a) establishes the current situation in Year 1-8 science education in the communities; (b) identifies developmental aspirations for stakeholders within the communities and identifies potential contributors and constraints to these aspirations; (c) implements mechanisms for achieving identified aspirations; and finally; (d) evaluates the effectiveness of such mechanisms. In its focus on the first two phases, this article incorporates the analytical lenses of Kaupapa Māori Theory and Bronfenbrenner's bio-ecological model. It concludes by outlining some priorities to consider for science education development based on the outcomes of our preliminary discussions.

  7. The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli.

    PubMed Central

    Gille, H; Egan, J B; Roth, A; Messer, W

    1991-01-01

    The FIS protein (factor for inversion stimulation) is known to stimulate site-specific recombination processes, such as the inversion of the G segment of bacteriophage Mu, by binding to specific enhancer sequences. It has also been shown to activate transcription from rRNA promoters both in vitro and in vivo. We have identified a specific binding site for FIS in the center of the origin of chromosomal DNA replication, oriC. The DNA bends upon FIS binding. Occupation of the FIS site and binding of DnaA, the initiator protein, to its adjacent binding site (R3) are mutually exclusive. A fis mutant strain can not be efficiently transformed with plasmids which carry and replicate from oriC, suggesting that FIS is required for minichromosome replication. Images PMID:1870971

  8. Determining the Impacts of Land Cover/use Categories on Land Surface Temperature Using LANDSAT8-OLI

    NASA Astrophysics Data System (ADS)

    Bektas Balcik, F.; Ergene, E. M.

    2016-06-01

    Due to unplanned and uncontrolled expansion of urban areas, rural land cover types have been replaced with artificial materials. As a result of these replacements, a wide range of negative environmental impacts seriously impacting human health, natural areas, ecosystems, climate, energy efficiency, and quality of living in town center. In this study, the impact of land surface temperature with respect to land cover and land use categories is investigated and evaluated for Istanbul, Turkey. Land surface temperature data was extracted from 21 October 2014 dated Landsat 8 OLI data using mono-window algorithm. In order to extract land use/cover information from remotely sensed data wetness, greenness and brightness components were derived using Tasseled Cap Transformation. The statistical relationship between land surface temperature and Tasseled Cap Transformation components in Istanbul was analyzed using the regression methods. Correlation between Land Surface Temperature and Meteorological Stations Temperature calculated %74.49.

  9. ALMA Early Science Observations of Outbursting Stellar Systems:Disk Masses for FU Ori and EXor Objects

    NASA Astrophysics Data System (ADS)

    Cieza, Lucas A.; Prieto, Jose Luis; Zhu, Zhaohuan; Tobin, John J.; Williams, Jonathan P.; Hales, Antonio; Casassus, Simon; Principe, David; Schreiber, Matthias R.

    2016-01-01

    It is believed that low-mass stars build a significant fraction of their total mass during short outbursts of enhanced accretion (up to 10E-4 MSOLAR /yr). The most dramatic episodic accretion events known in Young Stellar Objects (YSOs) are FU Ori and EXor outbursts. FU Ori objects are characterized by a sudden brightening of 5 magnitudes or more within one year and remain bright for decades. EXor objects have lower amplitude outbursts on shorter timescales (months to years). Here we present an ALMA 230 GHz (1.3 mm / band-6) mini-survey of 8 outbursting sources (three FU Ori and ve EXor objects) in Orion with 1" (450 AU) resolution. We present continuum, 12CO, 13CO, and C18O line images and derive dust and (when possible) gas disk masses. The disk masses derived from the line observations are systematically lower (by factors of 3-5) than those calculated from the continuum and adopting the standard gas-to-dust ratio of 100, which agrees with results on T Tauri disks in Taurus. After beam deconvolution, we nd that the disks are remarkably compact (r = 70-150 AU). The 1.3 mm fuxes of the outbursting sources span over three orders of magnitude, but the FU Ori objects are signi cantly brighter than the EXor objects. The inferred disk masses for the brightest objects are > 0.1 Msolar , rendering gravitational instability a likely outburst mechanism. On the other hand, the inferred disk masses for the faintest targets are ~ 1-5 MJUP , and thus an alternative mechanism must be responsible for their outbursts.

  10. The Combating Obesity in Māori and Pasifika Adolescent School-Children Study: COMPASS Methodology and Study Protocol

    PubMed Central

    Stoner, Lee; Shultz, Sarah P.; Lambrick, Danielle M.; Krebs, Jeremy; Weatherall, Mark; Palmer, Barry R.; Lane, Andrew M.; Kira, Geoff; Witter, Trevor; Williams, Michelle A.

    2013-01-01

    Background: Lifestyle modifications including, physical activity can reduce obesity-related morbidity and subsequent cardiovascular disease in youth. This study will investigate the efficacy of a culturally-sensitive, non-contact, boxing-orientated training program on obesity and related cardio-metabolic conditions in Māori and Pasifika adolescents. Details of the methodological aspects of recruitment, inclusion criteria, randomization, cultural sensitivity, intervention program, assessments, process evaluation, and statistical analyses are described. Methods: This study will be a community based, New Zealand, randomized control trial (RCT). Male and female obese (body mass index >95th percentile) Māori and Pasifika adolescents aged 14-16 years will be recruited and the sample size will be confirmed through a feasibility study. Combating Obesity in Māori and Pasifika Adolescent School-children Study (COMPASS) is a 6-month, theory-based program, conducted 3-times/week in a culturally appropriate setting. Each session includes 40 min boxing-orientated training and 30 min resistance training. Assessments will be made at baseline, 3-months, 6-months, 12-months, and 24-months. Main outcomes include abdominal obesity, endothelial function, and insulin resistance. Other outcomes include arterial stiffness, lipid profile, inflammatory biomarkers, well-being, and aerobic fitness. Control measures include physical activity, sleep behavior, and dietary intake. Results: As a protocol paper there are no specific results to present, our purpose is to share our RCT design with the scientific community. Conclusions: COMPASS will be used to provide direction for exercise prescription policy in at-risk Māori and Pasifika adolescents. PMID:23930168

  11. Interkingdom cooperation between Candida albicans, Streptococcus oralis and Actinomyces oris modulates early biofilm development on denture material.

    PubMed

    Cavalcanti, Indira M G; Nobbs, Angela H; Ricomini-Filho, Antônio Pedro; Jenkinson, Howard F; Del Bel Cury, Altair A

    2016-04-01

    Candida-associated stomatitis affects up to 60% of denture wearers, and Candida albicans remains the most commonly isolated fungal species. The oral bacteria Actinomyces oris and Streptococcus oralis are abundant in early dental plaque. The aims of this study were to determine the effects of S. oralis and A. oris on the development of C. albicans biofilms on denture material. Resin discs were coated with saliva and at early (1.5 h) or later (24 h) stages of biofilm development, cell numbers of each species were determined. Spatial distribution of microorganisms was visualized by confocal scanning laser microscopy of biofilms labelled by differential fluorescence or by fluorescence in situ hybridization. Interkingdom interactions underpinning biofilm development were also evaluated planktonically utilizing fluorescence microscopy. Synergistic interactions between all three species occurred within biofilms and planktonically. Bacterial cells coaggregated with each other and adhered singly or in coaggregates to C. albicans hyphal filaments. Streptococcus oralis appeared to enhance hyphal filament production and C. albicans biovolume was increased 2-fold. Concomitantly, cell numbers of S. oralis and A. oris were enhanced by C. albicans. Thus, cooperative physical and metabolic processes occurring between these three microbial species intensify pathogenic plaque communities on denture surfaces. PMID:26755532

  12. Role for a region of helically unstable DNA within the Epstein-Barr virus latent cycle origin of DNA replication oriP in origin function

    SciTech Connect

    Polonskaya, Zhanna; Benham, Craig J.; Hearing, Janet . E-mail: jhearing@ms.cc.sunysb.edu

    2004-10-25

    The minimal replicator of the Epstein-Barr virus (EBV) latent cycle origin of DNA replication oriP is composed of two binding sites for the Epstein-Barr virus nuclear antigen-1 (EBNA-1) and flanking inverted repeats that bind the telomere repeat binding factor TRF2. Although not required for minimal replicator activity, additional binding sites for EBNA-1 and TRF2 and one or more auxiliary elements located to the right of the EBNA-1/TRF2 sites are required for the efficient replication of oriP plasmids. Another region of oriP that is predicted to be destabilized by DNA supercoiling is shown here to be an important functional component of oriP. The ability of DNA fragments of unrelated sequence and possessing supercoiled-induced DNA duplex destabilized (SIDD) structures, but not fragments characterized by helically stable DNA, to substitute for this component of oriP demonstrates a role for the SIDD region in the initiation of oriP-plasmid DNA replication.

  13. The MaoP/maoS Site-Specific System Organizes the Ori Region of the E. coli Chromosome into a Macrodomain.

    PubMed

    Valens, Michèle; Thiel, Axel; Boccard, Frédéric

    2016-09-01

    The Ori region of bacterial genomes is segregated early in the replication cycle of bacterial chromosomes. Consequently, Ori region positioning plays a pivotal role in chromosome dynamics. The Ori region of the E. coli chromosome is organized as a macrodomain with specific properties concerning DNA mobility, segregation of loci and long distance DNA interactions. Here, by using strains with chromosome rearrangements and DNA mobility as a read-out, we have identified the MaoP/maoS system responsible for constraining DNA mobility in the Ori region and limiting long distance DNA interactions with other regions of the chromosome. MaoP belongs to a group of proteins conserved in the Enterobacteria that coevolved with Dam methylase including SeqA, MukBEF and MatP that are all involved in the control of chromosome conformation and segregation. Analysis of DNA rings excised from the chromosome demonstrated that the single maoS site is required in cis on the chromosome to exert its effect while MaoP can act both in cis and in trans. The position of markers in the Ori region was affected by inactivating maoP. However, the MaoP/maoS system was not sufficient for positioning the Ori region at the ¼-¾ regions of the cell. We also demonstrate that the replication and the resulting expansion of bulk DNA are localized centrally in the cell. Implications of these results for chromosome positioning and segregation in E. coli are discussed. PMID:27627105

  14. The 'warrior gene' and the Mãori people: the responsibility of the geneticists.

    PubMed

    Perbal, Laurence

    2013-09-01

    The 'gene of' is a teleosemantic expression that conveys a simplistic and linear relationship between a gene and a phenotype. Throughout the 20th century, geneticists studied these genes of traits. The studies were often polemical when they concerned human traits: the 'crime gene', 'poverty gene', 'IQ gene', 'gay gene' or 'gene of alcoholism'. Quite recently, a controversy occurred in 2006 in New Zealand that started with the claim that a 'warrior gene' exists in the Mãori community. This claim came from a geneticist working on the MAOA gene. This article is interested in the responsibility of that researcher regarding the origin of the controversy. Several errors were made: overestimation of results, abusive use of the 'gene of' kind of expression, poor communication with the media and a lack of scientific culture. The issues of the debate were not taken into account sufficiently, either from the political, social, ethical or even the genetic points of view. After more than 100 years of debates around 'genes of' all kinds (here, the 'warrior gene'), geneticists may not hide themselves behind the media when a controversy occurs. Responsibilities have to be assumed. PMID:22494506

  15. Mentoring and research misconduct: an analysis of research mentoring in closed ORI cases.

    PubMed

    Wright, David E; Titus, Sandra L; Cornelison, Jered B

    2008-09-01

    We are reporting on how involved the mentor was in promoting responsible research in cases of research misconduct. We reviewed the USPHS misconduct files of the Office of Research Integrity. These files are created by Institutions who prosecute a case of possible research misconduct; ORI has oversight review of these investigations. We explored the role of the mentor in the cases of trainee research misconduct on three specific behaviors that we believe mentors should perform with their trainee: (1) review source data, (2) teach specific research standards and (3) minimize stressful work situations. We found that almost three quarters of the mentors had not reviewed the source data and two thirds had not set standards. These two behaviors are positively correlated. We did not see convincing evidence in the records that mentors were causing stress, but it was apparent in the convicted trainees' confessions that over 50% experienced some kind of stress. Secondary data, while not created for this research purpose, allows us to look at concrete research behaviors that are otherwise not very researchable. We believe it is important for mentors and institutions to devote more attention to teaching mentors about the process of education and their responsibilities in educating the next generation of scientists. This becomes a critical issue for large research groups who need to determine who is in charge educating, supervising and assuring data integrity. PMID:18615274

  16. On the 2015 Outburst of the EXor Variable V1118 Ori

    NASA Astrophysics Data System (ADS)

    Giannini, T.; Lorenzetti, D.; Antoniucci, S.; Arkharov, A. A.; Larionov, V. M.; Di Paola, A.; Bisogni, S.; Marchetti, A.

    2016-03-01

    After a long-lasting period of quiescence of about a decade, the source V1118 Ori, one of the most representative members of the EXor variables, is now outbursting. Since the initial increase of the near-infrared flux of about 1 mag (JHK bands) registered on 2015 September 22, the source brightness has remained fairly stable. We estimate ΔV ˜ 3 mag, with respect to the quiescence phase. An optical/near-IR low-resolution spectrum has been obtained with the Large Binocular Telescope instruments MODS and LUCI2 and compared with a spectrum of a similar spectral resolution and sensitivity level taken during quiescence. Together with the enhancement of the continuum, the outburst spectrum presents a definitely higher number of emission lines, in particular H i recombination lines of the Balmer, Paschen, and Brackett series, along with bright permitted lines of several species, forbidden atomic lines, and CO ro-vibrational lines. Both mass accretion and mass-loss rates have significantly increased (by about an order of magnitude: {\\dot{M}}{acc} = 1.2-4.8 10-8 M⊙ yr-1, {\\dot{M}}{loss} = 0.8-2 10-9 M⊙ yr-1), with respect to the quiescence phase. If compared with previous outbursts, the present one appears less energetic. Alternatively, it could already be in the fading phase (with the maximum brightness level reached when the source was not visible), or, viceversa, still in the rising phase.

  17. VizieR Online Data Catalog: 25 Ori group low-mass stars (Downes+, 2014)

    NASA Astrophysics Data System (ADS)

    Downes, J. J.; Briceno, C.; Mateu, C.; Hernandez, J.; Vivas, A. K.; Calvet, N.; Hartmann, L.; Petr-Gotzens, M. G.; Allen, L.

    2015-04-01

    Multi-epoch optical V-, R-, I-band and Hα observations across the entire Orion OB1 association (spanning ~180deg2) were obtained as part of the CVSO (Briceno et al., 2005AJ....129..907B, Cat. J/AJ/129/907), being conducted since 1998 with the Jurgen Stock 1.0/1.5 Schmidt-type telescope and the 8000x8000-pixel QUEST-I CCD Mosaic camera, at the National Astronomical Observatory of Venezuela. During 2009 a new dedicated 4m survey telescope, the Visible and Infrared Survey Telescope for Astronomy (VISTA), located at ESO's Paranal Observatory, was commissioned by the VISTA consortium. For the Galactic Science Verification of VISTA, an ~30deg2 area of the Orion OB1 association, which included the Orion Belt region, part of the Orion A cloud, the 25 Orionis and σ Ori clusters, was imaged in the Z, Y, J, H and Ks filters, during 2009 October 16 to November 2. (3 data files).

  18. HCF1 and OCT2 Cooperate with EBNA1 To Enhance OriP-Dependent Transcription and Episome Maintenance of Latent Epstein-Barr Virus

    PubMed Central

    Dheekollu, Jayaraju; Wiedmer, Andreas; Sentana-Lledo, Daniel; Cassel, Joel; Messick, Troy

    2016-01-01

    ABSTRACT Epstein-Barr virus (EBV) establishes latent infections as multicopy episomes with complex patterns of viral gene transcription and chromatin structure. The EBV origin of plasmid replication (OriP) has been implicated as a critical control element for viral transcription, as well as viral DNA replication and episome maintenance. Here, we examine cellular factors that bind OriP and regulate histone modification, transcription regulation, and episome maintenance. We found that OriP is enriched for histone H3 lysine 4 (H3K4) methylation in multiple cell types and latency types. Host cell factor 1 (HCF1), a component of the mixed-lineage leukemia (MLL) histone methyltransferase complex, and transcription factor OCT2 (octamer-binding transcription factor 2) bound cooperatively with EBNA1 (Epstein-Barr virus nuclear antigen 1) at OriP. Depletion of OCT2 or HCF1 deregulated latency transcription and histone modifications at OriP, as well as the OriP-regulated latency type-dependent C promoter (Cp) and Q promoter (Qp). HCF1 depletion led to a loss of histone H3K4me3 (trimethylation of histone H3 at lysine 4) and H3 acetylation at Cp in type III latency and Qp in type I latency, as well as an increase in heterochromatic H3K9me3 at these sites. HCF1 depletion resulted in the loss of EBV episomes from Burkitt's lymphoma cells with type I latency and reactivation from lymphoblastoid cells (LCLs) with type III latency. These findings indicate that HCF1 and OCT2 function at OriP to regulate viral transcription, histone modifications, and episome maintenance. As HCF1 is best known for its function in herpes simplex virus 1 (HSV-1) immediate early gene transcription, our findings suggest that EBV latency transcription shares unexpected features with HSV gene regulation. IMPORTANCE EBV latency is associated with several human cancers. Viral latent cycle gene expression is regulated by the epigenetic control of the OriP enhancer region. Here, we show that cellular factors

  19. Whakawhanaungatanga: the importance of culturally meaningful connections to improve uptake of pulmonary rehabilitation by Māori with COPD – a qualitative study

    PubMed Central

    Levack, William MM; Jones, Bernadette; Grainger, Rebecca; Boland, Pauline; Brown, Melanie; Ingham, Tristram R

    2016-01-01

    Background Pulmonary rehabilitation is known to improve function and quality of life for people with chronic obstructive pulmonary disease (COPD). However, little research has been conducted on the influence of culture on experiences of pulmonary rehabilitation. This study examined factors influencing uptake of pulmonary rehabilitation by Māori with COPD in New Zealand. Method Grounded theory nested within kaupapa Māori methodology. Transcripts were analyzed from interviews and focus groups with 15 Māori and ten New Zealand non-Māori invited to attend pulmonary rehabilitation for COPD. Māori participants had either attended a mainstream hospital-based program, a community-based program designed “by Māori, for Māori”, or had experienced both. Results Several factors influencing uptake of pulmonary rehabilitation were common to all participants regardless of ethnicity: 1) participants’ past experiences (eg, of exercise; of health care systems), 2) attitudes and expectations, 3) access issues (eg, time, transport, and conflicting responsibilities), and 4) initial program experiences. These factors were moderated by the involvement of family and peers, interactions with health professionals, the way information on programs was presented, and by new illness events. For Māori, however, several additional factors were also identified relating to cultural experiences of pulmonary rehabilitation. In particular, Māori participants placed high value on whakawhanaungatanga: the making of culturally meaningful connections with others. Culturally appropriate communication and relationship building was deemed so important by some Māori participants that when it was absent, they felt strongly discouraged to attend pulmonary rehabilitation. Only the more holistic services offered a program in which they felt culturally safe and to which they were willing to return for ongoing rehabilitation. Conclusion Lack of attention to cultural factors in the delivery of

  20. Climacteric medicine: European Menopause and Andropause Society (EMAS) 2004/2005 position statements on peri- and postmenopausal hormone replacement therapy.

    PubMed

    Skouby, Sven O; Al-Azzawi, Farook; Barlow, David; Calaf-Alsina Erdogan Ertüngealp, Joaquin; Gompel, Anne; Graziottin, Alessandra; Hudita, Decebal; Pines, Amos; Rozenberg, Serge; Samsioe, Göran; Stevenson, John C

    2005-05-16

    In women experiencing distressing climacteric symptoms during the peri- and postmenopause there is conclusive evidence from abundant randomised controlled trials that systemic hormone replacement therapy (HRT) of any type affords symptom relief, with no alternative treatment producing similar effect. Though this evidence is accumulating, the question of how to provide best clinical practice in an attempt to both alleviate the menopausal symptoms and prevent the more long-term postmenopausal degenerative diseases is still under debate. When providing climacteric medicine, the dose and regimen of HRT needs to be individualised based on the principle of choosing the lowest appropriate dose in relation to severity of symptoms and on the menopausal age. However, few long-term data on different HRT formulations exist in symptomatic women, which also account for baseline risk of cardiovascular disease (CVD), breast cancer and osteoporosis. In most cases, an individualized prescription together with life-style management will sustain possibilities for net beneficial effects on climacteric symptoms, quality of life (QoL), sexuality and osteoporosis, with only rare risk of severe adverse effects. With the perspective provided by recent epidemiological findings, not least from the estrogen only arm of the Women's Health Initiative Study (WHI), European Menopause and Andropause Society (EMAS) supports research activities in symptomatic women with new HRT formulations in order to affect positively the balance of clinical benefit and risk, including specific information on QoL and also account for the traditional differences in treatment modalities between the US and Europe, and the difference in BMI, life-style and diet. In women experiencing an early menopause (<45 year) current data support a specific overall benefit of HRT. At present, more long-term systemic HRT may be considered in women at high risk of osteoporotic fractures, in particular when alternate therapies are

  1. Interaction of Kaposi's sarcoma-associated herpesvirus ORF59 with oriLyt is dependent on binding with K-Rta.

    PubMed

    Rossetto, Cyprian C; Susilarini, Ni Ketut; Pari, Gregory S

    2011-04-01

    Kaposi's sarcoma-associated herpesvirus (KSHV)/human herpesvirus 8 (HHV-8) displays two distinct life stages, latency and lytic reactivation. Progression through the lytic cycle and replication of the viral genome constitute an essential step toward the production of infectious virus and human disease. KSHV K-RTA has been shown to be the major transactivator required for the initiation of lytic reactivation. In the transient-cotransfection replication assay, K-Rta is the only noncore protein required for DNA synthesis. K-Rta was shown to interact with both C/EBPα binding motifs and the R response elements (RRE) within oriLyt. It is postulated that K-Rta acts in part to facilitate the recruitment of replication factors to oriLyt. In order to define the role of K-Rta in the initiation of lytic DNA synthesis, we show an interaction with ORF59, the DNA polymerase processivity factor (PF), one of the eight virally encoded proteins necessary for origin-dependent DNA replication. Using the chromatin immunoprecipitation (ChIP) assay, both K-Rta and ORF59 interact with the RRE and C/EBPα binding motifs within oriLyt in cells harboring the KSHV bacterial artificial chromosome (BAC). A transient-transfection ChIP assay demonstrated that the interaction of ORF59 with oriLyt is dependent on binding with K-Rta and that ORF59 fails to bind to oriLyt in the absence of K-Rta. Also, using the cotransfection replication assay, overexpression of the interaction domain of K-Rta with ORF59 has a dominant negative effect on oriLyt amplification, suggesting that the interaction of K-Rta with ORF59 is essential for DNA synthesis and supporting the hypothesis that K-Rta facilitates the formation of a replication complex at oriLyt. PMID:21289111

  2. Role of pi dimers in coupling ("handcuffing") of plasmid R6K's gamma ori iterons.

    PubMed

    Kunnimalaiyaan, Selvi; Inman, Ross B; Rakowski, Sheryl A; Filutowicz, Marcin

    2005-06-01

    One proposed mechanism of replication inhibition in iteron-containing plasmids (ICPs) is "handcuffing," in which the coupling of origins via iteron-bound replication initiator (Rep) protein turns off origin function. In minimal R6K replicons, copy number control requires the interaction of plasmid-encoded pi protein with the seven 22-bp iterons of the gamma origin of replication. Like other related Rep proteins, pi exists as both monomers and dimers. However, the ability of pi dimers to bind iterons distinguishes R6K from most other ICPs, where only monomers have been observed to bind iterons. Here, we describe experiments to determine if monomers or dimers of pi protein are involved in the formation of handcuffed complexes. Standard ligation enhancement assays were done using pi variants with different propensities to bind iterons as monomers or dimers. Consistent with observations from several ICPs, a hyperreplicative variant (pi.P106L(wedge)F107S) exhibits deficiencies in handcuffing. Additionally, a novel dimer-biased variant of pi protein (pi.M36A(wedge)M38A), which lacks initiator function, handcuffs iteron-containing DNA more efficiently than does wild-type pi. The data suggest that pi dimers mediate handcuffing, supporting our previously proposed model of handcuffing in the gamma ori system. Thus, dimers of pi appear to possess three distinct inhibitory functions with respect to R6K replication: transcriptional autorepression of pi expression, in cis competition (for origin binding) with monomeric activator pi, and handcuffing-mediated inhibition of replication in trans. PMID:15901701

  3. Absolute vicarious calibration of Landsat-8 OLI and Resourcesat-2 AWiFS sensors over Rann of Kutch site in Gujarat

    NASA Astrophysics Data System (ADS)

    Sharma, Shweta; Sridhar, V. N.; Prajapati, R. P.; Rao, K. M.; Mathur, A. K.

    2016-05-01

    In this work, vicarious calibration coefficients for all the four bands (green, red, NIR and SWIR) of Resourcesat-2 AWiFS sensor for four dates during Dec 2013-Nov 2014 and for seven bands (blue, green, red, NIR, SWIR1, SWIR2 and PAN) of OLI sensor onboard Landsat-8 for six dates during Dec 2013-Feb 2015 were estimated using field measured reflectance and measured atmospheric parameters during sensor image acquisition over Rann of Kutch site in Gujarat. The top of atmosphere (TOA) at-satellite radiances for all the bands were simulated using 6S radiative transfer code with field measured reflectance, synchronous atmospheric measurements and respective sensor's spectral response functions as an input. These predicted spectral radiances were compared with the radiances from the respective sensor's image in the respective band over the calibration site. Cross-calibration between the sensors AWiFS and OLI was also attempted using near-simultaneous same day image acquisition. Effect of spectral band adjustment factor was also studied with OLI sensor taken as reference sensor. Results show that the variation in average estimated radiance ratio for the AWiFS sensor was found to be within 10% for all the bands, whereas, for OLI sensor, the variation was found to be within 6% for all the bands except green and SWIR2 for which the variation was 8% and 11% respectively higher than the 5% uncertainty of the OLI sensor specification for TOA spectral radiance. At the 1σ level, red, NIR, SWIR1 and Panchromatic bands of OLI sensor showed close agreement between sensor-measured and vicarious TOA radiance resulting no change in calibration coefficient and hence indicating no sensor degradation. Two sets of near-simultaneous SBAFs were derived from respective ground measured target reflectance profiles and applied to the AWiFS and it was observed that overall, SBAF compensation provides a significant improvement in sensor agreement. The reduction in the difference between AWiFS and

  4. Estimation of rice phenology date using integrated HJ-1 CCD and Landsat-8 OLI vegetation indices time-series images.

    PubMed

    Wang, Jing; Huang, Jing-feng; Wang, Xiu-zhen; Jin, Meng-ting; Zhou, Zhen; Guo, Qiao-ying; Zhao, Zhe-wen; Huang, Wei-jiao; Zhang, Yao; Song, Xiao-dong

    2015-10-01

    Accurate estimation of rice phenology is of critical importance for agricultural practices and studies. However, the accuracy of phenological parameters extracted by remote sensing data cannot be guaranteed because of the influence of climate, e.g. the monsoon season, and limited available remote sensing data. In this study, we integrate the data of HJ-1 CCD and Landsat-8 operational land imager (OLI) by using the ordinary least-squares (OLS), and construct higher temporal resolution vegetation indices (VIs) time-series data to extract the phenological parameters of single-cropped rice. Two widely used VIs, namely the normalized difference vegetation index (NDVI) and 2-band enhanced vegetation index (EVI2), were adopted to minimize the influence of environmental factors and the intrinsic difference between the two sensors. Savitzky-Golay (S-G) filters were applied to construct continuous VI profiles per pixel. The results showed that, compared with NDVI, EVI2 was more stable and comparable between the two sensors. Compared with the observed phenological data of the single-cropped rice, the integrated VI time-series had a relatively low root mean square error (RMSE), and EVI2 showed higher accuracy compared with NDVI. We also demonstrate the application of phenology extraction of the single-cropped rice in a spatial scale in the study area. While the work is of general value, it can also be extrapolated to other regions where qualified remote sensing data are the bottleneck but where complementary data are occasionally available. PMID:26465131

  5. Modeling and analyzing land use and land cover change in Metropolitan Birmingham Area using Landsat TM, OLI data

    NASA Astrophysics Data System (ADS)

    Jing, Xuehan

    The Birmingham Metropolitan Area experienced land use land cover (LULC) change over the last three decades, such as the development of urban area, the development of transportation system, deforestation, and rise of population. The main purpose of the thesis is to model and analyze the LULC change through last three decades in Birmingham area, and also simulate the LULC in next three decades. Landsat 5 Thematic Mapper (TM) and Landsat 8 Operational Land Imager (OLI) data from U.S. Geological Survey (USGS) is used for investigating the LULC in Birmingham area. Supervised Classification is used; the maximum overall accuracy is 86.33%. Drivers such as transportation, topographic measures, population and income, location measures are analyzed. Remote sensing indices are also derived from Landsat data, such as NDVI, NDBI, MNDWI, and LST. Pearson's Correlation test is run among the LULC proportion, drivers within counties and census tracts. Finally, the cellular automation model SLEUTH is used to simulate the future pattern of LULC. The results shows the Birmingham experienced a significant LULC change in last three decades. Transportation and slope are two main factors in terms of LULC change. In summary, the thesis completes a systematic LULC classification in Birmingham area in last three decades, and uses different methods to model and analyze LULC and eventually simulate the LULC pattern in next three decades.

  6. Estimation of rice phenology date using integrated HJ-1 CCD and Landsat-8 OLI vegetation indices time-series images*

    PubMed Central

    Wang, Jing; Huang, Jing-Feng; Wang, Xiu-Zhen; Jin, Meng-Ting; Zhou, Zhen; Guo, Qiao-Ying; Zhao, Zhe-Wen; Huang, Wei-Jiao; Zhang, Yao; Song, Xiao-Dong

    2015-01-01

    Accurate estimation of rice phenology is of critical importance for agricultural practices and studies. However, the accuracy of phenological parameters extracted by remote sensing data cannot be guaranteed because of the influence of climate, e.g. the monsoon season, and limited available remote sensing data. In this study, we integrate the data of HJ-1 CCD and Landsat-8 operational land imager (OLI) by using the ordinary least-squares (OLS), and construct higher temporal resolution vegetation indices (VIs) time-series data to extract the phenological parameters of single-cropped rice. Two widely used VIs, namely the normalized difference vegetation index (NDVI) and 2-band enhanced vegetation index (EVI2), were adopted to minimize the influence of environmental factors and the intrinsic difference between the two sensors. Savitzky-Golay (S-G) filters were applied to construct continuous VI profiles per pixel. The results showed that, compared with NDVI, EVI2 was more stable and comparable between the two sensors. Compared with the observed phenological data of the single-cropped rice, the integrated VI time-series had a relatively low root mean square error (RMSE), and EVI2 showed higher accuracy compared with NDVI. We also demonstrate the application of phenology extraction of the single-cropped rice in a spatial scale in the study area. While the work is of general value, it can also be extrapolated to other regions where qualified remote sensing data are the bottleneck but where complementary data are occasionally available. PMID:26465131

  7. Building the bacterial orisome: high affinity DnaA recognition plays a role in setting the conformation of oriC DNA

    PubMed Central

    Kaur, Gulpreet; Vora, Mansi P.; Czerwonka, Christopher A.; Rozgaja, Tania A.; Grimwade, Julia E.; Leonard, Alan C.

    2014-01-01

    Summary During assembly of the E. coli pre-replicative complex (pre-RC), initiator DnaA oligomers are nucleated from three widely separated high affinity DnaA recognition sites in oriC. Oligomer assembly is then guided by low affinity DnaA recognition sites, but is also regulated by a switch-like conformational change in oriC mediated by sequential binding of two DNA bending proteins, Fis and IHF, serving as inhibitor and activator, respectively. Although their recognition sites are separated by up to 90 bp, Fis represses IHF binding and weak DnaA interactions until accumulating DnaA displaces Fis from oriC. It remains unclear whether high affinity DnaA binding plays any role in Fis repression at a distance and it is also not known whether all high affinity DnaA recognition sites play an equivalent role in oligomer formation. To examine these issues, we developed origin-selective recombineering methods to mutate E. coli chromosomal oriC. We found that, although oligomers were assembled in the absence of any individual high affinity DnaA binding site, loss of DnaA binding at peripheral sites eliminated Fis repression, and made binding of both Fis and IHF essential. We propose a model in which interaction of DnaA molecules at high affinity sites regulates oriC DNA conformation. PMID:24443848

  8. Transfer Protein TraY of Plasmid R1 Stimulates TraI-Catalyzed oriT Cleavage In Vivo

    PubMed Central

    Karl, Wolfgang; Bamberger, Martina; Zechner, Ellen L.

    2001-01-01

    The effect of TraY protein on TraI-catalyzed strand scission at the R1 transfer origin (oriT) in vivo was investigated. As expected, the cleavage reaction was not detected in Escherichia coli cells expressing tral and the integration host factor (IHF) in the absence of other transfer proteins. The TraM dependence of strand scission was found to be inversely correlated with the presence of TraY. Thus, the TraY and TraM proteins could each enhance cleaving activity at oriT in the absence of the other. In contrast, no detectable intracellular cleaving activity was exhibited by TraI in an IHF mutant strain despite the additional presence of both TraM and TraY. An essential role for IHF in this reaction in vivo is, therefore, implied. Mobilization experiments employing recombinant R1 oriT constructions and a heterologous conjugative helper plasmid were used to investigate the independent contributions of TraY and TraM to the R1 relaxosome during bacterial conjugation. In accordance with earlier observations, traY was dispensable for mobilization in the presence of traM, but mobilization did not occur in the absence of both traM and traY. Interestingly, although the cleavage assays demonstrate that TraM and TraY independently promote strand scission in vivo, TraM remained essential for mobilization of the R1 origin even in the presence of TraY. These findings suggest that, whereas TraY and TraM function may overlap to a certain extent in the R1 relaxosome, TraM additionally performs a second function that is essential for successful conjugative transmission of plasmid DNA. PMID:11208788

  9. EMA: a developmentally regulated cell-surface glycoprotein of CNS neurons that is concentrated at the leading edge of growth cones.

    PubMed

    Baumrind, N L; Parkinson, D; Wayne, D B; Heuser, J E; Pearlman, A L

    1992-08-01

    To identify cell-surface molecules that mediate interactions between neurons and their environment during neural development, we used monoclonal antibody techniques to define a developmentally regulated antigen in the central nervous system of the mouse. The antibody we produced (2A1) immunolabels cells throughout the central nervous system; we analyzed its distribution in the developing cerebral cortex, where it is expressed on cells very soon after they complete mitosis and leave the periventricular proliferative zone. Expression continues into adult life. The antibody also labels the epithelium of the choroid plexus and the renal proximal tubules, but does not label neurons of the peripheral nervous system in the dorsal root ganglia. In dissociated cell culture of embryonic cerebral cortex, 2A1 labels the surface of neurons but not glia. Immunolabeling of neurons in tissue culture is particularly prominent on the edge of growth cones, including filopodia and the leading edge of lamellipodia, when observed with either immunofluorescence or freeze-etch immunoelectron microscopy. Immunopurification with 2A1 of a CHAPS-extracted membrane preparation from brains of neonatal mice produces a broad (32-36 kD) electrophoretic band and a less prominent 70 kD band that are sensitive to N-glycosidase but not endoglycosidase H. Thus the 2A1 antibody recognizes a developmentally regulated, neuronal cell surface glycoprotein (or glycoproteins) with complex N-linked oligosaccharide side chains. We have termed the glycoprotein antigen EMA because of its prominence on the edge membrane of growth cones. EMA is similar to the M6 antigen (Lagenaur et al: J. Neurobiol. 23:71-88, 1992) in apparent molecular weight, distribution in tissue sections, and immunoreactivity on Western blots, suggesting that the two antigens are similar or identical. Expression of EMA is a very early manifestation of neuronal differentiation; its distribution on growth cones suggests a role in mediating the

  10. EMA-qPCR to monitor the efficiency of a closed-coupled solar pasteurization system in reducing Legionella contamination of roof-harvested rainwater.

    PubMed

    Reyneke, B; Dobrowsky, P H; Ndlovu, T; Khan, S; Khan, W

    2016-05-15

    Solar pasteurization is effective in reducing the level of indicator organisms in stored rainwater to within drinking water standards. However, Legionella spp. were detected at temperatures exceeding the recommended pasteurization temperatures using polymerase chain reaction assays. The aim of the current study was thus to apply EMA quantitative polymerase chain reaction (EMA-qPCR) to determine whether the Legionella spp. detected were intact cells and therefore possibly viable at pasteurization temperatures >70°C. The BacTiter-Glo™ Microbial Cell Viability Assay was also used to detect the presence of ATP in the tested samples, as ATP indicates the presence of metabolically active cells. Chemical analysis also indicated that all anions and cations were within the respective drinking water guidelines, with the exception of iron (mean: 186.76 μg/L) and aluminium (mean: 188.13 μg/L), which were detected in the pasteurized tank water samples at levels exceeding recommended guidelines. The BacTiter-Glo™ Microbial Cell Viability Assay indicated the presence of viable cells for all pasteurized temperatures tested, with the percentage of ATP (in the form of relative light units) decreasing with increasing temperature [70-79°C (96.7%); 80- 89°C (99.2%); 90-95°C (99.7%)]. EMA-qPCR then indicated that while solar pasteurization significantly reduced (p<0.05) the genomic copy numbers of intact Legionella cells in the pasteurized tank water (~99%), no significant difference (p>0.05) in the mean copy numbers was detected with an increase in the pasteurization temperature, with 6 × 10(3) genomic copies/mL DNA sample obtained at 95°C. As intact Legionella cells were detected in the pasteurized tank water samples, quantitative microbial risk assessment studies need to be conducted to determine the potential health risk associated with using the water for domestic purposes. PMID:26990076

  11. X-Raying the Beating Heart of a Newborn Star: Rotational Modulation of High-Energy Radiation from V1647 Ori

    NASA Technical Reports Server (NTRS)

    Hamaguchi, Kenji; Grosso, Nicolas; Kastner, Joel H.; Weintraub, David A.; Richmond, Michael; Petre, Robert; Teets, William K.; Principe, David

    2012-01-01

    We report a periodicity of approx.1 day in the highly elevated X-ray emission from the protostar V1647 Ori during its two recent multiple-year outbursts of mass accretion. This periodicity is indicative of protostellar rotation at near-breakup speed. Modeling of the phased X-ray light curve indicates the high-temperature ( 50 MK), X-ray-emitting plasma, which is most likely heated by accretion-induced magnetic reconnection, resides in dense ( 5 1010 cm.3), pancake-shaped magnetic footprints where the accretion stream feeds the newborn star. The sustained X-ray periodicity of V1647 Ori demonstrates that such protostellar magnetospheric accretion configurations can be stable over timescales of years. Subject headings: stars: formation stars: individual (V1647 Ori) stars: pre-main sequence X-rays: stars

  12. Studies of DNA Aptamer OliGreen and PicoGreen Fluorescence Interactions in Buffer and Serum.

    PubMed

    Bruno, John G; Sivils, Jeffrey C

    2016-07-01

    Spectrofluorometric and emission peak titration and timed studies of OliGreen (OG) and PicoGreen (PG) were conducted in Tris EDTA (TE) buffer, pooled rat and fetal bovine serum with two different aptamers of 72 and 192 bases in length to determine if OG or PG were suitable for aptamer pharmacokinetic (PK) studies in sera. Results indicated that OG and PG detected the single-stranded (ss) and double-stranded (ds) stem-loop structures of the two aptamers quite well in TE with reliable standard curves having exponential character (or several linear detection regions) up to 1 μg/ml of aptamer DNA with detection limits of ~1 ng/ml. The intensity of OG and PG staining appeared to correlate with the number and percentage of ss and ds bases in each aptamer. OG and PG fluorescence in pooled rat serum or fetal bovine serum (FBS) did not titer as a function of DNA aptamer concentration from 1 μg/ml to 1 ng/ml. This lack of OG or PG aptamer assays in serum is contrary to most published reports of OG or PG assays for ss antisense oligonucleotides, ds PCR amplicons or other types of DNA in serum or plasma. Further studies suggested that the lack of OG and PG assay titration in serum might not be entirely due to aptamer degradation from nucleases in serum since the fluorescence signals in serum appeared relatively stable over time from 30 min to 4 hours. A hypothesis is presented which attributes the inability of OG or PG to assay aptamers in serum to a combination of high blue-green autofluorescence in serum with possible serum nuclease degradation of aptamers over time and the changing aptamer to serum protein ratio coupled to nonspecific binding of serum proteins to aptamers thereby possibly changing aptamer conformations as a function of aptamer concentration during titration experiments. PMID:27209004

  13. Multiscale object-based drought monitoring and comparison in rainfed and irrigated agriculture from Landsat 8 OLI imagery

    NASA Astrophysics Data System (ADS)

    Ozelkan, Emre; Chen, Gang; Ustundag, Burak Berk

    2016-02-01

    Drought is a rapidly rising environmental issue that can cause hardly repaired or unrepaired damages to the nature and socio-economy. This is especially true for a region that features arid/semi-arid climate, including the Turkey's most important agricultural district - Southeast Anatolia. In this area, we examined the uncertainties of applying Landsat 8 Operational Land Imager (OLI) NDVI data to estimate meteorological drought - Standardized Precipitation Index (SPI) - measured from 31 in-situ agro-meteorological monitoring stations during spring and summer of 2013 and 2014. Our analysis was designed to address two important, yet under-examined questions: (i) how does the co-existence of rainfed and irrigated agriculture affect remote sensing drought monitoring in an arid/semi-arid region? (ii) What is the role of spatial scale in drought monitoring using a GEOBIA (geographic object-based image analysis) framework? Results show that spatial scale exerted a higher impact on drought monitoring especially in the drier year 2013, during which small scales were found to outperform large scales in general. In addition, consideration of irrigated and rainfed areas separately ensured a better performance in drought analysis. Compared to the positive correlations between SPI and NDVI over the rainfed areas, negative correlations were determined over the irrigated agricultural areas. Finally, the time lag effect was evident in the study, i.e., strong correlations between spring SPI and summer NDVI in both 2013 and 2014. This reflects the fact that spring watering is crucial for the growth and yield of the major crops (i.e., winter wheat, barley and lentil) cultivated in the region.

  14. Replication of Epstein-Barr virus oriLyt: lack of a dedicated virally encoded origin-binding protein and dependence on Zta in cotransfection assays.

    PubMed Central

    Fixman, E D; Hayward, G S; Hayward, S D

    1995-01-01

    Using a transient replication assay in which cosmid DNAs were cotransfected into Vero cells, we had previously demonstrated that oriLyt replication required six Epstein-Barr virus (EBV)-encoded replication genes. No oriLyt origin-binding protein was identified in this study, but oriLyt replication in the cotransfection assay was also dependent on the three lytic cycle transactivators Zta, Rta, and Mta and an activity encoded by the EBV Sal/I F fragment. We have now used expression plasmids for the six known replication proteins to further examine the question of the requirement for an oriLyt origin-binding protein. The activity in Sal/I-F was shown to be encoded by BKRF3. The predicted product of this open reading frame is an enzyme, uracyl DNA glycosylase, not an origin-binding protein, and is dispensable for replication in assays using expression plasmids. BBLF2, which is positionally related to the gene for the herpes simplex virus (HSV) UL9 origin-binding protein, was confirmed to be expressed as a spliced transcript with BBLF3 and not as an independent product. Examination of the requirement for the EBV transactivators revealed that Rta, while contributing to replication efficiency, was dispensable. Mta could be substituted by HSV IE63, and in complementation experiments with HSV replication genes, Mta was no longer required for replication of EBV oriLyt, suggesting that the contribution of Mta to replication may be indirect. Zta continued to be required for detectable oriLyt replication both with the EBV replication proteins and in the complementation assays with HSV replication proteins. We conclude that EBV does not encode an equivalent of HSV UL9 and that Zta is the sole virally encoded protein serving an essential origin-binding function. PMID:7707526

  15. First BVR light curves and preliminary results of a recently discovered W UMa-type binary: V1848 Ori

    NASA Astrophysics Data System (ADS)

    Kriwattanawong, W.; Poojon, P.

    2014-04-01

    First complete photometric light curves of a recently discovered contact binary, V1848 Ori, are presented. BVR imaging data were used to derive photometric solutions, using Wilson-Devinney code. We discovered that this system is a weak-contact binary, with a fillout factor of f = 13.14%(±1.44%). Preliminary results showed that V1848 Ori is an A-type W UMa system, with a mass ratio of q = 0.7615. The more massive component was found about 400 K hotter than the other one. This system has varied from W-type to A-type during the last decade. According to the preliminary physical parameters, the weak-contact configuration of this system, with the mass ratio close to unity, and no sign of long-term orbital period change yet, is unlikely to be broken. The contact configuration is expected to be maintained and become deeper or not, depending on effect of the AML mechanism.

  16. Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis

    PubMed Central

    Okumura, Hajime; Yoshimura, Mika; Ueki, Mikako; Oshima, Taku; Ogasawara, Naotake; Ishikawa, Shu

    2012-01-01

    Bacterial chromosome replication is initiated by binding of DnaA to a DnaA-box cluster (DBC) within the replication origin (oriC). In Bacillus subtilis, six additional DBCs are found outside of oriC and some are known to be involved in transcriptional regulation of neighboring genes. A deletion mutant lacking the six DBCs (Δ6) initiated replication early. Further, inactivation of spo0J in Δ6 cells yielded a pleiotropic phenotype, accompanied by severe growth inhibition. However, a spontaneous suppressor in soj or a deletion of soj, which stimulates DnaA activity in the absence of Spo0J, counteracted these effects. Such abnormal phenotypic features were not observed in a mutant background in which replication initiation was driven by a plasmid-derived replication origin. Moreover, introduction of a single DBC at various ectopic positions within the Δ6 chromosome partly suppressed the early-initiation phenotype, but this was dependent on insertion location. We propose that DBCs negatively regulate replication initiation by interacting with DnaA molecules and play a major role, together with Spo0J/Soj, in regulating the activity of DnaA. PMID:21911367

  17. On the characterization of medicated plasters containing NSAIDs according to novel indications of USP and EMA: adhesive property and in vitro skin permeation studies.

    PubMed

    Cilurzo, Francesco; Gennari, Chiara G M; Selmin, Francesca; Franzé, Silvia; Musazzi, Umberto M; Minghetti, Paola

    2015-02-01

    Abstract This work aims to establish if the assays recently introduced by EMA (Guideline on quality of transdermal patches-draft) and USP (Specific tests for transdermal delivery systems) to characterize transdermal patches (TP) are suitable for medicated plasters (MP). Six approved MP differing for type and characteristics of adhesive and backing layer were selected and characterized in terms of adhesive performances by tack, shear adhesion, peel adhesion and release liner removal tests and in vitro skin permeation. As far as the adhesive properties are concerned, the major drawback is related to the measurement of shear adhesion of MP made of an adhesive hydrogel and/or a stretchable backing layer which could be solved by reducing the applied load. Moreover, a concern on the mass balance prescribed by EMA draft for the acceptance of the results of in vitro penetration studies remains. Indeed, the acceptance range is narrow than that reported by Ph. Eur. requirement for uniformity of content. Finally, a novel calculation for evaluating the in vitro efficiency of MP in releasing the loaded drug through the skin was proposed. PMID:24164486

  18. An investigation of spatial variation of suspended sediment concentration induced by a bay bridge based on Landsat TM and OLI data

    NASA Astrophysics Data System (ADS)

    Cai, LiNa; Tang, DanLing; Li, CongYing

    2015-07-01

    This study investigates the spatial variation of suspended sediment concentration (SSC) induced by Hangzhou Bay Bridge (HBB) in the coastal waters of the East China Sea. Based on Landsat Thematic Mapper (TM), Operational Land Imager (OLI) data and in-situ measurements, spectral characteristics of waters in Hangzhou Bay and SSC retrieved from near infrared single band have been analyzed. The results revealed significant difference of SSC in the water on two sides of HBB. SSC increases downstream of the bridge under conditions of low turbidity (SSC < 300 mg l-1) upstream water, while SSC decreases when high turbidity water (SSC > 400 mg l-1) upstream. This study shows that the interaction of bridge piers and currents has important influences on SSC distribution by inducing hydrodynamic factors and by changing suspended sediment transport. Remotely sensed data with high spatial resolution as TM and OLI can be applied to investigate SSC variations induced by a bridge in the bay area.

  19. Lithological mapping using Landsat 8 OLI and Terra ASTER multispectral data in the Bas Drâa inlier, Moroccan Anti Atlas

    NASA Astrophysics Data System (ADS)

    Adiri, Zakaria; Harti, Abderrazak El; Jellouli, Amine; Maacha, Lhou; Bachaoui, El Mostafa

    2016-01-01

    Lithological mapping is a fundamental step in various mineral prospecting studies because it forms the basis of the interpretation and validation of retrieved results. Therefore, this study exploited the multispectral Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and Landsat 8 Operational Land Imager (OLI) data in order to map lithological units in the Bas Drâa inlier, at the Moroccan Anti Atlas. This task was completed by using principal component analysis (PCA), band ratios (BR), and support vector machine (SVM) classification. Overall accuracy and the kappa coefficient of SVM based on ground truth in addition to the results of PCA and BR show an excellent correlation with the existing geological map of the study area. Consequently, the methodology proposed demonstrates a high potential of ASTER and Landsat 8 OLI data in lithological units discrimination.

  20. Ability of LANDSAT-8 Oli Derived Texture Metrics in Estimating Aboveground Carbon Stocks of Coppice Oak Forests

    NASA Astrophysics Data System (ADS)

    Safari, A.; Sohrabi, H.

    2016-06-01

    The role of forests as a reservoir for carbon has prompted the need for timely and reliable estimation of aboveground carbon stocks. Since measurement of aboveground carbon stocks of forests is a destructive, costly and time-consuming activity, aerial and satellite remote sensing techniques have gained many attentions in this field. Despite the fact that using aerial data for predicting aboveground carbon stocks has been proved as a highly accurate method, there are challenges related to high acquisition costs, small area coverage, and limited availability of these data. These challenges are more critical for non-commercial forests located in low-income countries. Landsat program provides repetitive acquisition of high-resolution multispectral data, which are freely available. The aim of this study was to assess the potential of multispectral Landsat 8 Operational Land Imager (OLI) derived texture metrics in quantifying aboveground carbon stocks of coppice Oak forests in Zagros Mountains, Iran. We used four different window sizes (3×3, 5×5, 7×7, and 9×9), and four different offsets ([0,1], [1,1], [1,0], and [1,-1]) to derive nine texture metrics (angular second moment, contrast, correlation, dissimilar, entropy, homogeneity, inverse difference, mean, and variance) from four bands (blue, green, red, and infrared). Totally, 124 sample plots in two different forests were measured and carbon was calculated using species-specific allometric models. Stepwise regression analysis was applied to estimate biomass from derived metrics. Results showed that, in general, larger size of window for deriving texture metrics resulted models with better fitting parameters. In addition, the correlation of the spectral bands for deriving texture metrics in regression models was ranked as b4>b3>b2>b5. The best offset was [1,-1]. Amongst the different metrics, mean and entropy were entered in most of the regression models. Overall, different models based on derived texture metrics

  1. The Ionization Structure of Sharpless 2-264: Multiwavelength Observations of the λ Ori H II Region

    NASA Astrophysics Data System (ADS)

    Sahan, M.; Haffner, L. M.

    2016-06-01

    We present velocity-resolved maps taken with the Wisconsin H-Alpha Mapper (WHAM) in Hα, [S ii] λ 6716, and [N ii] λ 6583 around the well-known O8 III star λ Ori A (HD 36861) ({\\ell }=185^\\circ to 205^\\circ ,b=-24^\\circ to -1^\\circ ). The integrated intensity ({v}{{LSR}}=-80 to +80 km s‑1), {I}{{H}α }, within WHAM’s one-degree beams varies from ∼190 R near the center to ∼10 R on the periphery of the nebula where it becomes comparable to foreground and/or background emission in this complex region. Intensity ratios for [N ii]/Hα and [S ii]/Hα average 0.28 and 0.35, respectively. In both ratios, higher values are found preferentially at larger radii from λ Ori, although the behavior of [N ii]/Hα is complicated near the edges of the nebula. The [S ii]/[N ii] intensity ratio ranges from ∼0.5 to ∼1.0, with the value increasing toward larger radii (and lower Hα intensities). Variations of the [S ii]/Hα, [N ii]/Hα, and [S ii]/[N ii] line ratios in this diffuse region show some similar trends to those seen in the warm ionized medium (WIM) but with generally lower metal-line ratios. As with the WIM, the trends are driven by changes in the underlying physical parameters, most notably the ionization states and gas temperature. To investigate which cause might be dominant in this region, we use these extremely high signal-to-noise observations to construct a map of temperature and non-thermal velocity throughout the nebula. Using the line widths of Hα and [S ii], we separate thermal and non-thermal components and find spatial trends of these parameters within the nebula. Ion temperatures range between 4000 and 8000 K throughout the nebula. The non-thermal velocity map reveals a decrease in velocity from about 10 to 5 km s‑1 from the center to the edge of the lower half of the H ii region. In addition to using the widths as a measure of temperature, we also use the variation in [N ii]/Hα to estimate electron temperature. The results obtained from

  2. Segregation of relaxed replicated dimers when DNA ligase and DNA polymerase I are limited during oriC-specific DNA replication.

    PubMed Central

    Munson, B R; Maier, P G; Greene, R S

    1989-01-01

    An in vitro Escherichia coli oriC-specific DNA replication system was used to investigate the DNA replication pathways of oriC plasmids. When this system was perturbed by the DNA ligase inhibitor nicotinamide mononucleotide (NMN), alterations occurred in the initiation of DNA synthesis and processing of intermediates and DNA products. Addition of high concentrations of NMN soon after initiation resulted in the accumulation of open circular dimers (OC-OC). These dimers were decatenated to open circular monomers (form II or OC), which were then processed to closed circular supercoiled monomers (form I or CC) products. After a delay, limited ligation of the interlinked dimers (OC-OC to CC-OC and CC-CC) also occurred. Similar results were obtained with replication protein extracts from polA mutants. The presence of NMN before any initiation events took place prolonged the existence of nicked template DNA and promoted, without a lag period, limited incorporation into form II molecules. This DNA synthesis was nonspecific with respect to oriC, as judged by DnaA protein dependence, and presumably occurred at nicks in the template DNA. These results are consistent with oriC-specific initiation requiring closed supercoiled molecules dependent on DNA ligase activity. The results also show that decatenation of dimers occurs readily on nicked dimer and represents an efficient pathway for processing replication intermediates in vitro. Images PMID:2544556

  3. The use of an angularis oris axial pattern flap in a dog after resection of a multilobular osteochondroma of the hard palate

    PubMed Central

    Dicks, Naomi; Boston, Sarah

    2010-01-01

    An 11-year-old neutered male boxer was presented for treatment of a multilobular osteochondroma of the hard palate. The mass was surgically resected and the hard palate defect was reconstructed using an angularis oris axial pattern buccal mucosal flap. No local recurrence was reported 6 mo after surgery. PMID:21286330

  4. The magnetic field and circumstellar environment of the helium-strong star HD36485 = δOriC

    NASA Astrophysics Data System (ADS)

    Leone, F.; Bohlender, D. A.; Bolton, C. T.; Buemi, C.; Catanzaro, G.; Hill, G. M.; Stift, M. J.

    2010-02-01

    Extensive Hα spectroscopy of the cool, helium-strong star δOriC obtained over two decades has enabled a detailed analysis of the variable Hα emission observed in this sharp-lined and strongly magnetic B3V star. Radial velocity measurements from these and other spectra have also confirmed the binary nature of the star, the first detection of the secondary being provided, and permitted an improved determination of the system's orbital parameters. The amplitude of the radial velocities and a preliminary spectroscopic analysis indicate that the secondary component is an early A-type star. Disentangling the contribution of the two components to the Balmer line profiles, we determine an effective temperature for δOriC slightly larger than previously adopted in the literature. The Hα emission is variable with a period of 1.47775 +/- 0.00004d, assumed to be the rotation period of the primary component. After removal of the binary system's photospheric contribution to the Hα line, we find that the emission arises from two distinct, but asymmetrical, optically translucent circumstellar clouds. When strongest the emission peaks have intensities of approximately 15 per cent of the continuum level at about 150kms-1 on either side of the line centre, and emission is apparent to +/-225kms-1, or 6R* above the photosphere if we assume that the magnetic field forces the circumstellar material into rigid rotation about the star. New 6cm Very Large Array radio measurements, when combined with archival data, suggest that the radio flux of the star is also variable. An analysis of new and previously published magnetic field observations enabled us to derive a value for the inclination of the rotation axis of i = 12° +/- 3° and an obliquity of the magnetic axis of β <= 52°. The nature of the emission variability is similar to that of the prototypical helium-strong star σ Ori E, but since the latter object has an inclination of >75°, δOriC provides us with an opportunity to

  5. Spectroscopy of the M Supergiant α Ori in the 1 2.5 μm Region

    NASA Astrophysics Data System (ADS)

    Lundqvist, Martin; Wahlgren, Glenn

    The study of elemental abundances in cool stars via atomic lines in the optical region is made di.cult by stellar molecular absorption. At infrared wavelengths this problem is diminished, but ground-based observations suffer from absorption by the earth’s atmosphere. Fortunately, there are spectral windows through which we can observe. We have explored several such windows in the spectral region from 1 2.5 μm, coinciding with the wavelength domain of the new VLT instrument CRIRES, for atomic lines suitable for the study of cool luminous stars, in particular α Ori (M2Iab). We present preliminary results from this search along with our first results on abundances of iron and the weak s-process elements Sr, Y, Zr.

  6. Mobilization of Chimeric oriT Plasmids by F and R100-1: Role of Relaxosome Formation in Defining Plasmid Specificity

    PubMed Central

    Fekete, Richard A.; Frost, Laura S.

    2000-01-01

    Cleavage at the F plasmid nic site within the origin of transfer (oriT) requires the F-encoded proteins TraY and TraI and the host-encoded protein integration host factor in vitro. We confirm that F TraY, but not F TraM, is required for cleavage at nic in vivo. Chimeric plasmids were constructed which contained either the entire F or R100-1 oriT regions or various combinations of nic, TraY, and TraM binding sites, in addition to the traM gene. The efficiency of cleavage at nic and the frequency of mobilization were assayed in the presence of F or R100-1 plasmids. The ability of these chimeric plasmids to complement an F traM mutant or affect F transfer via negative dominance was also measured using transfer efficiency assays. In cases where cleavage at nic was detected, R100-1 TraI was not sensitive to the two-base difference in sequence immediately downstream of nic, while F TraI was specific for the F sequence. Plasmid transfer was detected only when TraM was able to bind to its cognate sites within oriT. High-affinity binding of TraY in cis to oriT allowed detection of cleavage at nic but was not required for efficient mobilization. Taken together, our results suggest that stable relaxosomes, consisting of TraI, -M, and -Y bound to oriT are preferentially targeted to the transfer apparatus (transferosome). PMID:10869081

  7. A Functional oriT in the Ptw Plasmid of Burkholderia cenocepacia Can Be Recognized by the R388 Relaxase TrwC

    PubMed Central

    Fernández-González, Esther; Bakioui, Sawsane; Gomes, Margarida C.; O'Callaghan, David; Vergunst, Annette C.; Sangari, Félix J.; Llosa, Matxalen

    2016-01-01

    Burkholderia cenocepacia is both a plant pathogen and the cause of serious opportunistic infections, particularly in cystic fibrosis patients. B. cenocepacia K56-2 harbors a native plasmid named Ptw for its involvement in the Plant Tissue Watersoaking phenotype. Ptw has also been reported to be important for survival in human cells. Interestingly, the presence of PtwC, a homolog of the conjugative relaxase TrwC of plasmid R388, suggests a possible function for Ptw in conjugative DNA transfer. The ptw region includes Type IV Secretion System genes related to those of the F plasmid. However, genes in the adjacent region shared stronger homology with the R388 genes involved in conjugative DNA metabolism. This region included the putative relaxase ptwC, a putative coupling protein and accessory nicking protein, and a DNA segment with high number of inverted repeats and elevated AT content, suggesting a possible oriT. Although we were unable to detect conjugative transfer of the Ptw resident plasmid, we detected conjugal mobilization of a co-resident plasmid containing the ptw region homologous to R388, demonstrating the cloned ptw region contains an oriT. A similar plasmid lacking ptwC could not be mobilized, suggesting that the putative relaxase PtwC must act in cis on its oriT. Remarkably, we also detected mobilization of a plasmid containing the Ptw oriT by the R388 relaxase TrwC, yet we could not detect PtwC-mediated mobilization of an R388 oriT-containing plasmid. Our data unambiguously show that the Ptw plasmid harbors DNA transfer functions, and suggests the Ptw plasmid may play a dual role in horizontal DNA transfer and eukaryotic infection. PMID:27200362

  8. The strain-specific cis-acting element of beet curly top geminivirus DNA replication maps to the directly repeated motif of the ori.

    PubMed

    Choi, I R; Stenger, D C

    1996-12-01

    Strains of beet curly top geminivirus (BCTV) possess distinct cis- and trans-acting replication specificity elements which are not separately interchangeable among strains. Analysis of the replication competency of chimeric BCTV genomes, in which portions of the origin of DNA replication (ori) were derived from heterologous BCTV strains, have permitted identification of an essential cis-acting element governing strain-specific replication in a subgroup II geminivirus. Our studies indicate that the cis-acting element responsible for strain-specific replication properties resides within the directly repeated motif of the BCTV ori. Transient replication assays conducted in leaf disks and complementation experiments conducted in whole plants indicated that the trans-acting replication specificity element, residing within the amino-terminal region of the C1 Rep protein, may recognize and replicate a chimeric BCTV genome containing a heterologous ori so long as all or portions of the core element of the directly repeated motif are derived from the same strain as the Rep protein. As Rep protein binding to the core element of the directly repeated motif has been demonstrated by others to be essential for replication of subgroup III geminiviruses, our results support the hypothesis that replication specificity of subgroup II viruses is governed by processes similar to that of subgroup III viruses. However, a second cis-acting element of the ori, which appears to contribute to subgroup III virus replication specificity, does not seem to be required for replication specificity among the subgroup II viruses examined. Nonetheless, a potential role for a second cis-acting element in the BCTV ori contributing to maximal replication cannot be excluded. PMID:8941329

  9. MULTIWAVELENGTH OBSERVATIONS OF V2775 Ori, AN OUTBURSTING PROTOSTAR IN L 1641: EXPLORING THE EDGE OF THE FU ORIONIS REGIME

    SciTech Connect

    Fischer, William J.; Megeath, S. Thomas; Kounkel, Marina; Tobin, John J.; Stutz, Amelia M.; Henning, Thomas; Ali, Babar; Stanke, Thomas; Osorio, Mayra; Wilson, T. L.

    2012-09-01

    Individual outbursting young stars are important laboratories for studying the physics of episodic accretion and the extent to which this phenomenon can explain the luminosity distribution of protostars. We present new and archival data for V2775 Ori (HOPS 223), a protostar in the L 1641 region of the Orion molecular clouds that was discovered by Caratti o Garatti et al. to have recently undergone an order-of-magnitude increase in luminosity. Our near-infrared spectra of the source have strong blueshifted He I {lambda}10830 absorption, strong H{sub 2}O and CO absorption, and no H I emission, all typical of FU Orionis sources. With data from the Infrared Telescope Facility, the Two Micron All Sky Survey, the Hubble Space Telescope, Spitzer, the Wide-field Infrared Survey Explorer, Herschel, and the Atacama Pathfinder Experiment that span from 1 to 70 {mu}m pre-outburst and from 1 to 870 {mu}m post-outburst, we estimate that the outburst began between 2005 April and 2007 March. We also model the pre- and post-outburst spectral energy distributions of the source, finding it to be in the late stages of accreting its envelope with a disk-to-star accretion rate that increased from {approx}2 Multiplication-Sign 10{sup -6} M{sub Sun} yr{sup -1} to {approx}10{sup -5} M{sub Sun} yr{sup -1} during the outburst. The post-outburst luminosity at the epoch of the FU Orionis-like near-IR spectra is 28 L{sub Sun }, making V2775 Ori the least luminous documented FU Orionis outburster with a protostellar envelope. The existence of low-luminosity outbursts supports the notion that a range of episiodic accretion phenomena can partially explain the observed spread in protostellar luminosities.

  10. Revisiting the rigidly rotating magnetosphere model for σ Ori E - II. Magnetic Doppler imaging, arbitrary field RRM, and light variability

    NASA Astrophysics Data System (ADS)

    Oksala, M. E.; Kochukhov, O.; Krtička, J.; Townsend, R. H. D.; Wade, G. A.; Prvák, M.; Mikulášek, Z.; Silvester, J.; Owocki, S. P.

    2015-08-01

    The initial success of the Rigidly Rotating Magnetosphere (RRM) model application to the B2Vp star σ Ori E by Townsend, Owocki & Groote triggered a renewed era of observational monitoring of this archetypal object. We utilize high-resolution spectropolarimetry and the magnetic Doppler imaging (MDI) technique to simultaneously determine the magnetic configuration, which is predominately dipolar, with a polar strength Bd = 7.3-7.8 kG and a smaller non-axisymmetric quadrupolar contribution, as well as the surface distribution of abundance of He, Fe, C, and Si. We describe a revised RRM model that now accepts an arbitrary surface magnetic field configuration, with the field topology from the MDI models used as input. The resulting synthetic H α emission and broad-band photometric observations generally agree with observations, however, several features are poorly fit. To explore the possibility of a photospheric contribution to the observed photometric variability, the MDI abundance maps were used to compute a synthetic photospheric light curve to determine the effect of the surface inhomogeneities. Including the computed photospheric brightness modulation fails to improve the agreement between the observed and computed photometry. We conclude that the discrepancies cannot be explained as an effect of inhomogeneous surface abundance. Analysis of the UV light variability shows good agreement between observed variability and computed light curves, supporting the accuracy of the photospheric light variation calculation. We thus conclude that significant additional physics is necessary for the RRM model to acceptably reproduce observations of not only σ Ori E, but also other similar stars with significant stellar wind-magnetic field interactions.

  11. The 2005 Accretion Outburst in V1118 Ori: Evidence for A Spectral Change in X-rays

    NASA Astrophysics Data System (ADS)

    Audard, M.; Güdel, M.; Skinner, S. L.; Briggs, K. R.; Walter, F. M.; Stringfellow, G.; Hamilton, R. T.; Guinan, E. F.

    2005-12-01

    We present results from our X-ray monitoring campaign of the 2005 accretion outburst in the young low-mass star V1118 Ori. Optical and near-infrared photometry are presented as well. The X-ray data from early 2005 indicate that the X-ray flux and luminosity varied within a factor of two only, and were similar to the pre-outburst values measured in a serendipitous observation in 2002. Similarly, the hydrogen column density showed no evidence for significant excursions from the pre-outburst value of a few times 1021 cm-2. However, we observed a spectral change from a dominant hot plasma ( ˜ 25 MK) in 2002 and in January 2005 to a cooler plasma ( ˜ 8 MK) in February and March 2005. We argue that the closing in of the accretion disk during the outburst disrupted the hot magnetic loops high in the corona, whereas the lower cooler loops were less affected and became the dominant coronal component. We acknowledge support by NASA through Chandra award DD5-6029X and through XMM-Newton award NNG05GI96G to Columbia University. The Chandra X-ray Observatory Center is operated by the Smithsonian Astrophysical Observatory for and on behalf of the NASA under contract NAS8-03060. Based on observations obtained with XMM-Newton, an ESA science mission with instruments and contributions directly funded by ESA Member States and NASA. The PSI group acknowledges support from the Swiss National Science Foundation (grants 20-58827.99 and 20-66875.01). Stony Brook's participation in SMARTS is made possible by support from the offices of the Provost and the Vice President for Research. We thank J. Allyn Smith, P. McGehee, J. Espinoza, and D. Gonzalez for doing the observations with the SMARTS telescopes. We also thank H. Tannanbaum, N. Schartel, and the VLA TOO panel for granting time to observe V1118 Ori.

  12. PREFACE: Proceedings of the 11th European Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis

    NASA Astrophysics Data System (ADS)

    2010-07-01

    This volume of IOP Conference Series: Materials Science and Engineering contains papers from the 11th Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis which took place from 10-14 May 2009 in the Hotel Faltom, Gdynia, Poland. The primary aim of this series of workshops is to assess the state-of-the-art and reliability of microbeam analysis techniques. The workshops also provide a forum where students and young scientists starting out on careers in microbeam analysis can meet and discuss with the established experts. The workshops have a very distinct format comprising invited plenary lectures by internationally recognized experts, poster presentations by the participants and round table discussions on the key topics led by specialists in the field. For this workshop EMAS invited speakers on the following topics: EPMA, EBSD, fast energy-dispersive X-ray spectroscopy, three-dimensional microanalysis, and micro-and nanoanalysis in the natural resources industry. The continuing relevance of the EMAS workshops and the high regard in which they are held internationally can be seen from the fact that 69 posters from 16 countries were on display at the meeting and that the participants came from as far away as Japan and the USA. A number of participants with posters were invited to give short oral presentations of their work in two dedicated sessions. As at previous workshops there was also a special oral session for young scientists. Small cash prizes were awarded for the three best posters and for the best oral presentation by a young scientist. The prize for the best poster went to the contribution by G Tylko, S Dubchak, Z Banach and K Turnau, entitled Monte Carlo simulation for an assessment of standard validity and quantitative X-ray microanalysis in plant. Joanna Wojewoda-Budka of the Institute of Metallurgy and Materials Science, Krakow, received the prize for the best oral presentation by a

  13. Otariodibacter oris gen. nov., sp. nov., a member of the family Pasteurellaceae isolated from the oral cavity of pinnipeds.

    PubMed

    Hansen, Mie Johanne; Bertelsen, Mads Frost; Christensen, Henrik; Bojesen, Anders Miki; Bisgaard, Magne

    2012-11-01

    A total of 27 bacterial isolates from California sea lions and a walrus tentatively classified within the family Pasteurellaceae was further characterized by genotypic and phenotypic tests. Phylogenetic analysis of partial 16S rRNA and rpoB gene sequences showed that the isolates investigated formed a monophyletic group, tentatively designated Bisgaard taxon 57. According to 16S rRNA gene sequences, the most closely related species with a validly published name was Bisgaardia hudsonensis and the most closely related species based on rpoB sequence comparison was Pasteurella multocida subsp. multocida; highest similarities between the isolates and the type strains of B. hudsonensis and P. multocida subsp. multocida were 95.0 and 88.2%. respectively. All isolates of Bisgaard taxon 57 exhibit the phenotypic characters of the family Pasteurellaceae. Members of Bisgaard taxon 57 can be separated from existing genera of the Pasteurellaceae by the following tests: positive reactions for catalase, oxidase, Voges-Proskauer and indole; no X- or V-factor dependency; and acid production from L-arabinose (slow), L-fucose, maltose and trehalose, but not from dulcitol, D-mannitol, D-mannose or sucrose. The main fatty acids of Bisgaard taxon 57 (CCUG 59994(T)) are C(14:0), C(16:0), C(16:1)ω7c and the summed feature C(14:0) 3-OH/iso-C(16:1) I. This fatty acid profile is characteristic of members of the Pasteurellaceae. The quinone profile of Bisgaard taxon 57 (DSM 23800(T)) was similar to that of other genera in the Pasteurellaceae. The DNA G+C content of strain Baika1(T) is 36.2 mol%, which is at the lower end of the range for members of the family Pasteurellaceae. On the basis of both phylogenetic and phenotypic evidence, it is proposed that members of Bisgaard taxon 57 should be classified as representatives of a novel species in a new genus, Otariodibacter oris gen. nov., sp. nov. The type strain of Otariodibacter oris is Baika1(T) (=CCUG 59994(T)=DSM 23800(T)), which was

  14. The fluid and electrolyte balance of New Zealand European and Māori/Pacific Island athletes: An observational study.

    PubMed

    McLean, Andrew; Brown, Rachel Clare; Black, Katherine Elizabeth

    2016-04-01

    Observational research on professional athletes from the USA suggests differences may exist in sweat sodium loss based on ethnic differences. The New Zealand (NZ) sporting population is mainly of European or Māori/Pacific Island origin. Therefore, this study aimed to describe the fluid-electrolyte balance of athletes by ethnicity. A total of 20 Māori/Pacific Islanders (MP; body mass 100.97 ± 13.05 kg) and 29 NZ European (NZE; body mass 89.11 ± 11.56 kg) elite male athletes were recruited. Sweat rates were determined by body mass change during a 1-h spin cycle exercise session, during which fluid intakes and heart rate were recorded. Sweat samples were analysed for sodium concentration. Mean ± SD sweat sodium concentrations were 73.4 ± 27.2 mmol·L(-1) and 55.5 ± 26.8 mmol·L(-1) for the MP and NZE groups, respectively (p = 0.070). Sweat rate was 0.93 ± 0.26 L·h(-1) for the MP group and 0.89 ± 0.33 L·h(-1) for the NZE group (p = 0.357). Fluid intake was 1.05 ± 0.48 L and 0.93 ± 0.49 L for MP and NZE, respectively (p = 0.395). Half of the MP group gained weight during the exercise session compared to 37% of the NZE group. Pre-exercise urine specific gravity was significantly lower amongst the NZE group (1.016 ± 0.009 g mL(-1)) than the MP group (1.024 ± 0.008 g mL(-1)) p = 0.001. There was no significant difference in heart rate between the groups, p = 0.082. Hydration practices of athletes in NZ may differ by ethnicity, and this may highlight the need for more targeted education by ethnicity. PMID:25743610

  15. The EXOTIME Monitoring Program Discovers Substellar Companion Candidates around the Rapidly Pulsating Subdwarf B Stars V1636 Ori and DW Lyn

    NASA Astrophysics Data System (ADS)

    Schuh, S.; Silvotti, R.; Lutz, R.; Kim, S.-L.; Exotime Collaboration

    2014-04-01

    The EXOTIME monitoring program has discovered sub-stellar companion candidates around the rapidly pulsating subdwarf B stars V1636 Ori and DW Lyn using the timing method. Here we motivate our continuing search, and refer to descriptions of the photometric data collected, the data analysis and the characteristics of the O-C diagrams obtained. We also discuss our on-going efforts to consolidate the candidate discoveries with additional simulations and confirm them with independent methods.

  16. Whakawhiti Kōrero, a Method for the Development of a Cultural Assessment Tool, Te Waka Kuaka, in Māori Traumatic Brain Injury

    PubMed Central

    Elder, Hinemoa; Kersten, Paula

    2015-01-01

    The importance of tools for the measurement of outcomes and needs in traumatic brain injury is well recognised. The development of tools for these injuries in indigenous communities has been limited despite the well-documented disparity of brain injury. The wairua theory of traumatic brain injury (TBI) in Māori proposes that a culturally defined injury occurs in tandem with the physical injury. A cultural response is therefore indicated. This research investigates a Māori method used in the development of cultural needs assessment tool designed to further examine needs associated with the culturally determined injury and in preparation for formal validation. Whakawhiti kōrero is a method used to develop better statements in the development of the assessment tool. Four wānanga (traditional fora) were held including one with whānau (extended family) with experience of traumatic brain injury. The approach was well received. A final version, Te Waka Kuaka, is now ready for validation. Whakawhiti kōrero is an indigenous method used in the development of cultural needs assessment tool in Māori traumatic brain injury. This method is likely to have wider applicability, such as Mental Health and Addictions Services, to ensure robust process of outcome measure and needs assessment development. PMID:26576070

  17. The past photometric history of the FU Ori-type young eruptive star 2MASS J06593158-0405277 = V960 Mon

    NASA Astrophysics Data System (ADS)

    Jurdana-Šepić, Rajka; Munari, Ulisse

    2016-02-01

    The known FU Ori-type young eruptive stars are exceedingly rare (a dozen or so confirmed objects) and 2MASS J06593158-0405277, with its 2014 outburst, is likely the latest addition to the family. All members have displayed just one such eruption in their recorded history, an event lasting for decades. To test the FU Ori nature of 2MASS J06593158-0405277, we have reconstructed its photometric history by measuring its brightness on Harvard photographic plates spanning the time interval 1899-1989. No previous large amplitude eruption similar to that initiated in 2014 has been found, as in bona fide FU Ori-type objects. The median value of the brightness in quiescence of 2MASS J06593158-0405277 is B = 15.5, with the time interval 1935-1950 characterized by a large variability (˜ 1 mag amplitude) that contrasts with the remarkable photometric stability displayed at later epochs. The variability during 1935-1950 can either be ascribed to some T Tau like activity of 2MASS J06593158-0405277 itself or to the also young and fainter star 2MASS J06593168-0405224 that lies 5 arcsec to the North and forms an unresolved pair at the astrometric scale of Harvard photographic plates.

  18. Studies in Be-star variability. I - A remarkable similarity of the rapid periodic light variations of EM Cep, Sigma ORI E, and possibly LQ And

    NASA Astrophysics Data System (ADS)

    Harmanec, P.

    1984-08-01

    The rapid periodic light variations observed in photometric observations of two (possibly three) Be stars (Sigma-Ori E, EM Cep, and LQ And) are analyzed. The variation is characterized by a light curve with two similar but unequal minima and maxima which are reminiscent of the light curves of contact eclipsing binaries. The stars have rather short periods (1.191 days for Sigma-Ori E, 0.086 days for EM Cep, and 0.623 days for LQ And) and are completely lacking in the radial-velocity variations associated with these periods. Spectral variations in Sigma-Ori E correlate well with variations in the photometric period, and this case might also apply to EM Cep and LQ And. It is suspected that the variations are associated with the rotational periods of the stars, thereby confirming the applicability of the magnetic oblique rotator model for He variable stars developed by Shore and Bolton (1982). The light curves of all three stars are reproduced in graphic form.

  19. Whakawhiti Kōrero, a Method for the Development of a Cultural Assessment Tool, Te Waka Kuaka, in Māori Traumatic Brain Injury.

    PubMed

    Elder, Hinemoa; Kersten, Paula

    2015-01-01

    The importance of tools for the measurement of outcomes and needs in traumatic brain injury is well recognised. The development of tools for these injuries in indigenous communities has been limited despite the well-documented disparity of brain injury. The wairua theory of traumatic brain injury (TBI) in Māori proposes that a culturally defined injury occurs in tandem with the physical injury. A cultural response is therefore indicated. This research investigates a Māori method used in the development of cultural needs assessment tool designed to further examine needs associated with the culturally determined injury and in preparation for formal validation. Whakawhiti kōrero is a method used to develop better statements in the development of the assessment tool. Four wānanga (traditional fora) were held including one with whānau (extended family) with experience of traumatic brain injury. The approach was well received. A final version, Te Waka Kuaka, is now ready for validation. Whakawhiti kōrero is an indigenous method used in the development of cultural needs assessment tool in Māori traumatic brain injury. This method is likely to have wider applicability, such as Mental Health and Addictions Services, to ensure robust process of outcome measure and needs assessment development. PMID:26576070

  20. The N-terminus of porcine circovirus type 2 replication protein is required for nuclear localization and ori binding activities

    SciTech Connect

    Lin, W.-L.; Chien, M.-S.; Du, Y.-W.; Wu, P.-C.; Huang Chienjin

    2009-02-20

    Porcine circovirus type 2 possesses a circular, single-stranded DNA genome that requires the replication protein (Rep) for virus replication. To characterize the DNA binding potential and the significant region that confers the nuclear localization of the Rep protein, the defined coding regions of rep gene were cloned and expressed. All of the recombinant proteins except for the N-terminal 110 residues deletion mutant could bind to the double-stranded minimal binding site of replication origin (ori). In addition, the N-terminal deletion mutant lacking 110 residues exhibited mainly cytoplasmic staining in the transfected cells in contrast to the others, which localized dominantly in the nucleus, suggesting that this N-terminal domain is essential for nuclear localization. Furthermore, a series of green fluorescence proteins (GFP) containing potential nuclear localization signal (NLS) sequences were tested for their cellular distribution. The ability of the utmost 20 residues of the N-terminal region to target the GFP to the nucleus confirmed its role as a functional NLS.

  1. The Chandra Delta Ori Large Project: Occultation Measurements of the Shocked Gas tn the Nearest Eclipsing O-Star Binary

    NASA Technical Reports Server (NTRS)

    Corcoran, Michael F.; Nichols, Joy; Naze, Yael; Rauw, Gregor; Pollock, Andrew; Moffat, Anthony; Richardson, Noel; Evans, Nancy; Hamaguchi, Kenji; Oskinova, Lida; Hamann, W. -R.; Gull, Ted; Ignace, Rico; Hole, Tabetha; Iping, Rosina; Walborn, Nolan; Hoffman, Jennifer; Lomax, Jamie; Waldron, Wayne; Owocki, Stan; Maiz-Apellaniz, Jesus; Leutenegger, Maurice; Hole, Tabetha; Gayley, Ken; Russell, Chris

    2013-01-01

    Delta Ori is the nearest massive, single-lined eclipsing binary (O9.5 II + B0.5III). As such it serves as a fundamental calibrator of the mass-radius-luminosity relation in the upper HR diagram. It is also the only eclipsing O-type binary system which is bright enough to be observable with the CHANDRA gratings in a reasonable exposure. Studies of resolved X-ray line complexes provide tracers of wind mass loss rate and clumpiness; occultation by the X-ray dark companion of the line emitting region can provide direct spatial information on the location of the X-ray emitting gas produced by shocks embedded in the wind of the primary star. We obtained phase-resolved spectra with Chandra in order to determine the level of phase-dependent vs. secular variability in the shocked wind. Along with the Chandra observations we obtained simultaneous photometry from space with the Canadian MOST satellite to help understand the relation between X-ray and photospheric variability.

  2. PREFACE: European Microbeam Analysis Society's 14th European Workshop on Modern Developments and Applications in Microbeam Analysis (EMAS 2015), Portorož, Slovenia, 3-7 May 2015

    NASA Astrophysics Data System (ADS)

    Llovet, Xavier; Matthews, Michael B.; Čeh, Miran; Langer, Enrico; Žagar, Kristina

    2016-02-01

    This volume of the IOP Conference Series: Materials Science and Engineering contains papers from the 14th Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis which took place from the 3rd to the 7th of May 2015 in the Grand Hotel Bernardin, Portorož, Slovenia. The primary aim of this series of workshops is to assess the state-of-the-art and reliability of microbeam analysis techniques. The workshops also provide a forum where students and young scientists starting out on a career in microbeam analysis can meet and discuss with the established experts. The workshops have a unique format comprising invited plenary lectures by internationally recognized experts, poster presentations by the participants and round table discussions on the key topics led by specialists in the field.This workshop was organized in collaboration with the Jožef Stefan Institute and SDM - Slovene Society for Microscopy. The technical programme included the following topics: electron probe microanalysis, STEM and EELS, materials applications, cathodoluminescence and electron backscatter diffraction (EBSD), and their applications. As at previous workshops there was also a special oral session for young scientists. The best presentation by a young scientist was awarded with an invitation to attend the 2016 Microscopy and Microanalysis meeting at Columbus, Ohio. The prize went to Shirin Kaboli, of the Department of Metals and Materials Engineering of McGill University (Montréal, Canada), for her talk entitled "Electron channelling contrast reconstruction with electron backscattered diffraction". The continuing relevance of the EMAS workshops and the high regard in which they are held internationally can be seen from the fact that 71 posters from 16 countries were on display at the meeting and that the participants came from as far away as Japan, Canada, USA, and Australia. A selection of participants with posters was invited

  3. The relationship between socially-assigned ethnicity, health and experience of racial discrimination for Māori: analysis of the 2006/07 New Zealand Health Survey

    PubMed Central

    2013-01-01

    Background In New Zealand, there are significant and long-standing inequalities in a range of health outcomes, risk factors and healthcare measures between Māori (indigenous peoples) and Pākehā (European). This study expands our understanding of racism as a determinant of such inequalities to examine the concept of socially-assigned ethnicity (how an individual is classified by others ethnically/racially) and its relationship to health and racism for Māori. There is some evidence internationally that being socially-assigned as the dominant ethnic group (in this case European) offers health advantage. Methods We analysed data from the 2006/07 New Zealand Health Survey for adult participants who self-identified their ethnicity as Māori (n = 3160). The association between socially-assigned ethnicity and individual experience of racial discrimination, and socially-assigned ethnicity and health (self-rated health, psychological distress [Kessler 10-item scale]) was assessed using logistic and linear regression analyses, respectively. Results Māori who were socially-assigned as European-only had significantly lower experience of racial discrimination (adjusted odds ratio [OR] = 0.58, 95% confidence interval [CI] = 0.44, 0.78) than Māori who were socially-assigned as non-European. Being socially-assigned as European-only was also associated with health advantage compared to being socially-assigned non-European: more likely to respond with self-rated very good/excellent health (age, sex adjusted OR = 1.39, 95% CI = 1.10, 1.74), and lower Kessler 10 scores (age, sex adjusted mean difference = -0.66, 95% C I = -1.22, -0.10). These results were attenuated following adjustment for socioeconomic measures and experience of racial discrimination. Conclusions Results suggest that, in a race conscious society, the way people’s ethnicities are viewed by others is associated with tangible health risk or advantage, and this is consistent with an

  4. Li+ ion transport studies in Li2O-Li2SO4-ZnO-B2O3 glass system

    NASA Astrophysics Data System (ADS)

    Kolavekar, Sangeeta B.; Lakshmikantha, R.; Ayachit, N. H.; Anavekar, R. V.

    2013-06-01

    Li+ ion transport studies have been carried in Li2O-Li2SO4-ZnO-B2O3 glass system. Electrical conductivity has been measured out over a wide range of temperature (450K-500K) and frequencies (40 Hz - 10 MHz). The dc conductivities show Arrhenius behavior and show compositional dependence. The ac conductivity behavior has been analyzed using Almond-West power law using a single exponent. The exponent `s' obtained from the power law fits is found to have values ranging from 0.36 - 0.45 in these glasses and shows temperature dependence, which is attributed to high degree of modification in the glass network.

  5. PREFACE: Proceedings of the 11th European Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis

    NASA Astrophysics Data System (ADS)

    2010-07-01

    This volume of IOP Conference Series: Materials Science and Engineering contains papers from the 11th Workshop of the European Microbeam Analysis Society (EMAS) on Modern Developments and Applications in Microbeam Analysis which took place from 10-14 May 2009 in the Hotel Faltom, Gdynia, Poland. The primary aim of this series of workshops is to assess the state-of-the-art and reliability of microbeam analysis techniques. The workshops also provide a forum where students and young scientists starting out on careers in microbeam analysis can meet and discuss with the established experts. The workshops have a very distinct format comprising invited plenary lectures by internationally recognized experts, poster presentations by the participants and round table discussions on the key topics led by specialists in the field. For this workshop EMAS invited speakers on the following topics: EPMA, EBSD, fast energy-dispersive X-ray spectroscopy, three-dimensional microanalysis, and micro-and nanoanalysis in the natural resources industry. The continuing relevance of the EMAS workshops and the high regard in which they are held internationally can be seen from the fact that 69 posters from 16 countries were on display at the meeting and that the participants came from as far away as Japan and the USA. A number of participants with posters were invited to give short oral presentations of their work in two dedicated sessions. As at previous workshops there was also a special oral session for young scientists. Small cash prizes were awarded for the three best posters and for the best oral presentation by a young scientist. The prize for the best poster went to the contribution by G Tylko, S Dubchak, Z Banach and K Turnau, entitled Monte Carlo simulation for an assessment of standard validity and quantitative X-ray microanalysis in plant. Joanna Wojewoda-Budka of the Institute of Metallurgy and Materials Science, Krakow, received the prize for the best oral presentation by a

  6. Mapping paddy rice planting area in cold temperate climate region through analysis of time series Landsat 8 (OLI), Landsat 7 (ETM+) and MODIS imagery

    NASA Astrophysics Data System (ADS)

    Qin, Yuanwei; Xiao, Xiangming; Dong, Jinwei; Zhou, Yuting; Zhu, Zhe; Zhang, Geli; Du, Guoming; Jin, Cui; Kou, Weili; Wang, Jie; Li, Xiangping

    2015-07-01

    Accurate and timely rice paddy field maps with a fine spatial resolution would greatly improve our understanding of the effects of paddy rice agriculture on greenhouse gases emissions, food and water security, and human health. Rice paddy field maps were developed using optical images with high temporal resolution and coarse spatial resolution (e.g., Moderate Resolution Imaging Spectroradiometer (MODIS)) or low temporal resolution and high spatial resolution (e.g., Landsat TM/ETM+). In the past, the accuracy and efficiency for rice paddy field mapping at fine spatial resolutions were limited by the poor data availability and image-based algorithms. In this paper, time series MODIS and Landsat ETM+/OLI images, and the pixel- and phenology-based algorithm are used to map paddy rice planting area. The unique physical features of rice paddy fields during the flooding/open-canopy period are captured with the dynamics of vegetation indices, which are then used to identify rice paddy fields. The algorithm is tested in the Sanjiang Plain (path/row 114/27) in China in 2013. The overall accuracy of the resulted map of paddy rice planting area generated by both Landsat ETM+ and OLI is 97.3%, when evaluated with areas of interest (AOIs) derived from geo-referenced field photos. The paddy rice planting area map also agrees reasonably well with the official statistics at the level of state farms (R2 = 0.94). These results demonstrate that the combination of fine spatial resolution images and the phenology-based algorithm can provide a simple, robust, and automated approach to map the distribution of paddy rice agriculture in a year.

  7. Estimation of Chlorophyll-a Concentration and the Trophic State of the Barra Bonita Hydroelectric Reservoir Using OLI/Landsat-8 Images.

    PubMed

    Watanabe, Fernanda Sayuri Yoshino; Alcântara, Enner; Rodrigues, Thanan Walesza Pequeno; Imai, Nilton Nobuhiro; Barbosa, Cláudio Clemente Faria; Rotta, Luiz Henrique da Silva

    2015-09-01

    Reservoirs are artificial environments built by humans, and the impacts of these environments are not completely known. Retention time and high nutrient availability in the water increases the eutrophic level. Eutrophication is directly correlated to primary productivity by phytoplankton. These organisms have an important role in the environment. However, high concentrations of determined species can lead to public health problems. Species of cyanobacteria produce toxins that in determined concentrations can cause serious diseases in the liver and nervous system, which could lead to death. Phytoplankton has photoactive pigments that can be used to identify these toxins. Thus, remote sensing data is a viable alternative for mapping these pigments, and consequently, the trophic. Chlorophyll-a (Chl-a) is present in all phytoplankton species. Therefore, the aim of this work was to evaluate the performance of images of the sensor Operational Land Imager (OLI) onboard the Landsat-8 satellite in determining Chl-a concentrations and estimating the trophic level in a tropical reservoir. Empirical models were fitted using data from two field surveys conducted in May and October 2014 (Austral Autumn and Austral Spring, respectively). Models were applied in a temporal series of OLI images from May 2013 to October 2014. The estimated Chl-a concentration was used to classify the trophic level from a trophic state index that adopted the concentration of this pigment-like parameter. The models of Chl-a concentration showed reasonable results, but their performance was likely impaired by the atmospheric correction. Consequently, the trophic level classification also did not obtain better results. PMID:26322489

  8. Estimation of Chlorophyll-a Concentration and the Trophic State of the Barra Bonita Hydroelectric Reservoir Using OLI/Landsat-8 Images

    PubMed Central

    Watanabe, Fernanda Sayuri Yoshino; Alcântara, Enner; Rodrigues, Thanan Walesza Pequeno; Imai, Nilton Nobuhiro; Barbosa, Cláudio Clemente Faria; Rotta, Luiz Henrique da Silva

    2015-01-01

    Reservoirs are artificial environments built by humans, and the impacts of these environments are not completely known. Retention time and high nutrient availability in the water increases the eutrophic level. Eutrophication is directly correlated to primary productivity by phytoplankton. These organisms have an important role in the environment. However, high concentrations of determined species can lead to public health problems. Species of cyanobacteria produce toxins that in determined concentrations can cause serious diseases in the liver and nervous system, which could lead to death. Phytoplankton has photoactive pigments that can be used to identify these toxins. Thus, remote sensing data is a viable alternative for mapping these pigments, and consequently, the trophic. Chlorophyll-a (Chl-a) is present in all phytoplankton species. Therefore, the aim of this work was to evaluate the performance of images of the sensor Operational Land Imager (OLI) onboard the Landsat-8 satellite in determining Chl-a concentrations and estimating the trophic level in a tropical reservoir. Empirical models were fitted using data from two field surveys conducted in May and October 2014 (Austral Autumn and Austral Spring, respectively). Models were applied in a temporal series of OLI images from May 2013 to October 2014. The estimated Chl-a concentration was used to classify the trophic level from a trophic state index that adopted the concentration of this pigment-like parameter. The models of Chl-a concentration showed reasonable results, but their performance was likely impaired by the atmospheric correction. Consequently, the trophic level classification also did not obtain better results. PMID:26322489

  9. Role of π Dimers in Coupling (“Handcuffing”) of Plasmid R6K's γ ori Iterons

    PubMed Central

    Kunnimalaiyaan, Selvi; Inman, Ross B.; Rakowski, Sheryl A.; Filutowicz, Marcin

    2005-01-01

    One proposed mechanism of replication inhibition in iteron-containing plasmids (ICPs) is “handcuffing,” in which the coupling of origins via iteron-bound replication initiator (Rep) protein turns off origin function. In minimal R6K replicons, copy number control requires the interaction of plasmid-encoded π protein with the seven 22-bp iterons of the γ origin of replication. Like other related Rep proteins, π exists as both monomers and dimers. However, the ability of π dimers to bind iterons distinguishes R6K from most other ICPs, where only monomers have been observed to bind iterons. Here, we describe experiments to determine if monomers or dimers of π protein are involved in the formation of handcuffed complexes. Standard ligation enhancement assays were done using π variants with different propensities to bind iterons as monomers or dimers. Consistent with observations from several ICPs, a hyperreplicative variant (π·P106L∧F107S) exhibits deficiencies in handcuffing. Additionally, a novel dimer-biased variant of π protein (π·M36A∧M38A), which lacks initiator function, handcuffs iteron-containing DNA more efficiently than does wild-type π. The data suggest that π dimers mediate handcuffing, supporting our previously proposed model of handcuffing in the γ ori system. Thus, dimers of π appear to possess three distinct inhibitory functions with respect to R6K replication: transcriptional autorepression of π expression, in cis competition (for origin binding) with monomeric activator π, and handcuffing-mediated inhibition of replication in trans. PMID:15901701

  10. The Double-Lined Spectroscopic Binary θ?1 Ori E: An Intermedite-Mass, Pre-Main Sequence System

    NASA Astrophysics Data System (ADS)

    Costero, R.; Poveda, A.; Echevarría, J.

    2007-08-01

    Theta 1 Ori E = ADS 4186 E = NSV 2291 , the fifth brightest star in the Orion Trapezium, was reported to be a double-lined spectroscopic binary by Costero et al. 2006 (IAUC 8669). In this paper we present the derived orbital elements of the binary system and physical parameters of its members. The velocity curve of each component was derived from 61 Echelle spectra in which the absorption systems are not blended. The radial velocities were obtained by cross-correlating these spectra with those of two reference stars with well-measured radial velocities, in the 5120 -"5515 Å spectral range. The binary components are nearly identical, their composite spectral type being around G0IV. The Li I 6708 Å absorption line is strong and the Ca II K line is in emission inboth stars, indicative of their pre-main sequence evolutionary stage. The orbit is circular (e <10^-3). The orbital period and systemic velocity are 9.896 ± 0.001 d and 32.4 ± 1.0 km/s.The semi-amplitude of both components is 85.7±3.0 km/s. From the published K magnitude for the object and a suitable pre-main sequence stellar evolution model, we find the bolometric luminosity, radius and mass of each component to be, respectively, 89, 8.4 and 4.0 (in solar units), if the stars are identical to each other. Based on the latter values, the orbital inclination is about 59°, while the minimum Inclination for grazing eclipses to occur is 65°. Hence, no observable eclipses in this binary are expected.

  11. Fluorescence Processes in the Outer Atmospheres of the Evolved M-Stars Alpha Ori (M2 Iab) and Gamma Cru (M3.4 III)

    NASA Astrophysics Data System (ADS)

    Carpenter, Kenneth; Kober, Gladys; Nielsen, Krister; Ayres, Thomas; Wahlgren, Glenn

    2015-08-01

    The prototypical M-giant and M-supergiant stars, Gamma Cru (M3.4 III)) and Alpha Ori (M2Iab), have been observed as part of the "Advanced Spectral Library (ASTRAL) Project: Cool Stars" (PI = T. Ayres). "ASTRAL-Cool Stars" is an HST Cycle 18 Treasury Program designed to collect, using the Space Telescope Imaging Spectrograph (STIS), a definitive set of representative, high-resolution (R~46,000 in the FUV up to ~1700 Å, R~30,000 for 1700-2150 Å, and R~114,000 >2150 Å) and high signal/noise (S/N>100) UV spectra of eight F-M evolved cool stars. These extremely high-quality UV echelle spectra are available from the HST archive and through the University of Colorado (http://casa.colorado.edu/~ayres/ASTRAL/). In this paper, we use the very rich emission-line spectra of the two evolved M stars in the sample, Gamma Cru (GaCrux) and Alpha Ori (Betelgeuse), to study the fluorescence processes operating in their outer atmospheres. We summarize the pumping transitions and fluorescent line products known on the basis of previous work and newly identified in our on-going analysis of these extraordinary new “Treasury” spectra. Detailed descriptions of selected processes are given to illustrate their operation. The wide variety of fluorescence processes in operation in these outer atmospheres, both molecular and atomic, suggest that there is a mixture of warm and cool plasmas present and that H I Ly-alpha in particular is locally very strong, even though, in the case of Alpha Ori, no flux is seen at earth due to strong circumstellar absorption at that wavelength. Many new fluorescence line products and several new processes have been identified in these spectra, which are more complete and of higher S/N than previously available for these stars.

  12. Stable replication of the EBNA1/OriP-mediated baculovirus vector and its application to anti-HCV gene therapy

    PubMed Central

    Suzuki, Hitoshi; Matsumoto, Norihiko; Suzuki, Tomoyuki; Chang, Myint OO; Takaku, Hiroshi

    2009-01-01

    Background Hepatitis C virus (HCV) is one of the main causes of liver-related morbidity and mortality. Although combined interferon-α-ribavirin therapy is effective for about 50% of the patients with HCV, better therapies are needed and preventative vaccines have yet to be developed. Short-hairpin RNAs (shRNAs) inhibit gene expression by RNA interference. The application of transient shRNA expression is limited, however, due to the inability of the shRNA to replicate in mammalian cells and its inefficient transduction. The duration of transgene (shRNA) expression in mammalian cells can be significantly extended using baculovirus-based shRNA-expressing vectors that contain the latent viral protein Epstein-Barr nuclear antigen 1 (EBNA1) and the origin of latent viral DNA replication (OriP) sequences. These recombinant vectors contain compatible promoters and are highly effective for infecting primary hepatocyte and hepatoma cell lines, making them very useful tools for studies of hepatitis B and hepatitis C viruses. Here, we report the use of these baculovirus-based vector-derived shRNAs to inhibit core-protein expression in full-length hepatitis C virus (HCV) replicon cells. Results We constructed a long-term transgene shRNA expression vector that contains the EBV EBNA1 and OriP sequences. We also designed baculovirus vector-mediated shRNAs against the highly conserved core-protein region of HCV. HCV core protein expression was inhibited by the EBNA1/OriP baculovirus vector for at least 14 days, which was considerably longer than the 3 days of inhibition produced by the wild-type baculovirus vector. Conclusion These findings indicate that we successfully constructed a long-term transgene (shRNA) expression vector (Ac-EP-shRNA452) using the EBNA1/OriP system, which was propagated in Escherichia coli and converted into mammalian cells. The potential anti-HCV activity of the long-term transgene (shRNA) expression vector was evaluated with the view of establishing

  13. Sr, Nd, Hf and Pb isotope systematics of basaltic samples from IODP Site U1349A, Ori Massif of the Shatsky Rise Oceanic Plateau, Northwest Pacific

    NASA Astrophysics Data System (ADS)

    Romanova, I.; Murphy, D. T.; Geldmacher, J.; Heydolph, K.

    2011-12-01

    Shatsky Rise is located on the northwest Pacific plate, and has an elongated structure from southeast to northwest. It represents a large oceanic plateau (up to 500 km wide) that was formed between 140-150 Ma in an active spreading ridge at relatively high emplacement rates (1.2-4.6 km3/y), similar to those of some flood basalt provinces [1]. Whether the Shatsky Rise formed by the impact of a mantle plume head or by shallow mantle processes at a rapidly extending triple junction is a matter of ongoing debate. Geochemical research will provide vital information on mantle sources and melting conditions contributing to LIP magmatism [1]. The Ori Massif is one of the three elevated massifs within the Shatsky Rise, comprising a volume of 0.7 × 106 km3. It is situated in the middle of the plateau with the largest edifice Tamu Massif to the southeast and the smaller Shirshov Massif to the northwest. Within plume theory Ori Massif formed at an intermediate to early stage of a plume volcanism. In shallow mantle theory it formed from a shallow lithospheric source during oceanic spreading at a triple junction [1]. During IODP Expedition 324 two sites were drilled on Ori Massif, one of which, U1349A, targeted the summit. The Hole U1349A penetrated 250.4m beneath the seafloor, and includes 165.1m of sediments and 85.3m of igneous basement. The uppermost volcanic flows (~55m) are highly vesicular, stongly altered to reddish brown clays and contain abundant pseudomorphs after olivine. These flows are underlain by highly altered volcaniclastic breccia (>40m) [1]. Here we present Sr, Nd, Hf and Pb isotope characterisation of the U1349A basaltic basement samples. Our results on the Ori Massif will be combined with isotope data from the Tamu Massif and Shirshov Massif. Thus, some preliminary conclusions about the source of mantle material that formed the Shatsky Rise oceanic plateau and its variation in space and time can be made. [1] Expedition 324 Scientists (2010) Expedition

  14. A Single parS Sequence from the Cluster of Four Sites Closest to oriC Is Necessary and Sufficient for Proper Chromosome Segregation in Pseudomonas aeruginosa

    PubMed Central

    Jecz, Paulina; Bartosik, Aneta A.; Glabski, Krzysztof; Jagura-Burdzy, Grazyna

    2015-01-01

    Among the mechanisms that control chromosome segregation in bacteria are highly-conserved partitioning systems comprising three components: ParA protein (a deviant Walker-type ATPase), ParB protein (a DNA-binding element) and multiple cis-acting palindromic centromere-like sequences, designated parS. Ten putative parS sites have been identified in the P. aeruginosa PAO1 genome, four localized in close proximity of oriC and six, diverged by more than one nucleotide from a perfect palindromic sequence, dispersed along the chromosome. Here, we constructed and analyzed P. aeruginosa mutants deprived of each single parS sequence and their different combinations. The analysis included evaluation of a set of phenotypic features, chromosome segregation, and ParB localization in the cells. It was found that ParB binds specifically to all ten parS sites, although with different affinities. The P. aeruginosa parS mutant with all ten parS sites modified (parSnull) is viable however it demonstrates the phenotype characteristic for parAnull or parBnull mutants: slightly slower growth rate, high frequency of anucleate cells, and defects in motility. The genomic position and sequence of parS determine its role in P. aeruginosa biology. It transpired that any one of the four parS sites proximal to oriC (parS1 to parS4), which are bound by ParB with the highest affinity, is necessary and sufficient for the parABS role in chromosome partitioning. When all these four sites are mutated simultaneously, the strain shows the parSnull phenotype, which indicates that none of the remaining six parS sites can substitute for these four oriC-proximal sites in this function. A single ectopic parS2 (inserted opposite oriC in the parSnull mutant) facilitates ParB organization into regularly spaced condensed foci and reverses some of the mutant phenotypes but is not sufficient for accurate chromosome segregation. PMID:25794281

  15. Automated Classification of Land Cover Using Landsat 8 Oli Surface Reflectance Product and Spectral Pattern Analysis Concept - Case Study in Hanoi, Vietnam

    NASA Astrophysics Data System (ADS)

    Nguyen Dinh, Duong

    2016-06-01

    Recently USGS released provisional Landsat 8 Surface Reflectance product, which allows conducting land cover mapping over large composed of number of image scenes without necessity of atmospheric correction. In this study, the authors present a new concept for automated classification of land cover. This concept is based on spectral patterns analysis of reflected bands and can be automated using predefined classification rule set constituted of spectral pattern shape, total reflected radiance index (TRRI) and ratios of spectral bands. Given a pixel vector B6 = {b1,b2,b3,b4,b5,b6} where b1, b2,...,b6 denote bands 2, 3, ...,7 of OLI sensor respectively. By using the pixel vector B6 we can construct spectral reflectance curve. Each spectral curve is featured by a shape, which can be described in simplified form of an analogue pattern, which is consisted of 15 digits of 0, 1 and 2 showing mutual relative position of spectral vertices. Value of comparison between band i and j is 2 if bj > bi, 1 if bj = bi and 0 if bj < bi. Simplified spectral pattern is defined by 15 digits as m1,2m1,3m1,4m1,5m1,6m2,3m2,4m2,5m2,6m3,4m3,5m3,6m4,5m4,6m5,6 where mi,j is result of comparison of reflectance between bi and bj and has values of 0, 1 and 2. After construction of SSP for each pixel in the input image, the original image will be decomposed to component images, which contain pixels with the same SRCS pattern. The decomposition can be written analytically by equation A = Σnk=1Ck where A stands for original image with 6 spectral bands, n is number of component images decomposed from A and Ck is component image. For this study, we use Landsat 8 OLI reflectance image LC81270452013352LGN00 and LC81270452015182LGN00. For the decomposition, we use only six reflective bands. Each land cover class is defined by SSP code, threshold values for TRRI and band ratios. Automated classification of land cover was realized with 8 classes: forest, shrub, grass, water, wetland, develop land, barren

  16. Analysis of Relationship Between Urban Heat Island Effect and Land Use/cover Type Using Landsat 7 ETM+ and Landsat 8 Oli Images

    NASA Astrophysics Data System (ADS)

    Aslan, N.; Koc-San, D.

    2016-06-01

    The main objectives of this study are (i) to calculate Land Surface Temperature (LST) from Landsat imageries, (ii) to determine the UHI effects from Landsat 7 ETM+ (June 5, 2001) and Landsat 8 OLI (June 17, 2014) imageries, (iii) to examine the relationship between LST and different Land Use/Land Cover (LU/LC) types for the years 2001 and 2014. The study is implemented in the central districts of Antalya. Initially, the brightness temperatures are retrieved and the LST values are calculated from Landsat thermal images. Then, the LU/LC maps are created from Landsat pan-sharpened images using Random Forest (RF) classifier. Normalized Difference Vegetation Index (NDVI) image, ASTER Global Digital Elevation Model (GDEM) and DMSP_OLS nighttime lights data are used as auxiliary data during the classification procedure. Finally, UHI effect is determined and the LST values are compared with LU/LC classes. The overall accuracies of RF classification results were computed higher than 88 % for both Landsat images. During 13-year time interval, it was observed that the urban and industrial areas were increased significantly. Maximum LST values were detected for dry agriculture, urban, and bareland classes, while minimum LST values were detected for vegetation and irrigated agriculture classes. The UHI effect was computed as 5.6 °C for 2001 and 6.8 °C for 2014. The validity of the study results were assessed using MODIS/Terra LST and Emissivity data and it was found that there are high correlation between Landsat LST and MODIS LST data (r2 = 0.7 and r2 = 0.9 for 2001 and 2014, respectively).

  17. A comparison of Landsat 8 (OLI) and Landsat 7 (ETM+) in mapping geology and visualising lineaments: A case study of central region Kenya

    NASA Astrophysics Data System (ADS)

    Mwaniki, M. W.; Moeller, M. S.; Schellmann, G.

    2015-04-01

    Availability of multispectral remote sensing data cheaply and its higher spectral resolution compared to remote sensing data with higher spatial resolution has proved valuable for geological mapping exploitation and mineral mapping. This has benefited applications such as landslide quantification, fault pattern mapping, rock and lineament mapping especially with advanced remote sensing techniques and the use of short wave infrared bands. While Landsat and Aster data have been used to map geology in arid areas and band ratios suiting the application established, mapping in geology in highland regions has been challenging due to vegetation land cover. The aim of this study was to map geology and investigate bands suited for geological applications in a study area containing semi arid and highland characteristics. Therefore, Landsat 7 (ETM+, 2000) and Landsat 8 (OLI, 2014) were compared in determining suitable bands suited for geological mapping in the study area. The methodology consist performing principal component and factor loading analysis, IHS transformation and decorrelation stretch of the FCC with the highest contrast, band rationing and examining FCC with highest contrast, and then performing knowledge base classification. PCA factor loading analysis with emphasis on geological information showed band combination (5, 7, 3) for Landsat 7 and (6, 7, 4) for Landsat 8 had the highest contrast and more contrast was enhanced by performing decorrelation stretch. Band ratio combination (3/2, 5/1, 7/3) for Landsat 7 and (4/3, 6/2, 7/4) for Landsat 8 had more contrast on geologic information and formed the input data in knowledge base classification. Lineament visualisazion was achieved by performing IHS transformation of FCC with highest contrast and its saturation band combined as follows: Landsat 7 (IC1, PC2, saturation band), Landsat 8 (IC1, PC4, saturation band). The results were compared against existing geology maps and were superior and could be used to update

  18. The Regulated Expression, Intracellular Trafficking, and Membrane Recycling of the P2Y-like Receptor GPR17 in Oli-neu Oligodendroglial Cells*

    PubMed Central

    Fratangeli, Alessandra; Parmigiani, Elena; Fumagalli, Marta; Lecca, Davide; Benfante, Roberta; Passafaro, Maria; Buffo, Annalisa; Abbracchio, Maria P.; Rosa, Patrizia

    2013-01-01

    GPR17 is a G-protein-coupled receptor that is activated by two classes of molecules: uracil-nucleotides and cysteinyl-leukotrienes. GPR17 is required for initiating the differentiation of oligodendrocyte precursors but has to be down-regulated to allow cells to undergo terminal maturation. Although a great deal has been learned about GPR17 expression and signaling, no information is currently available about the trafficking of native receptors after the exposure of differentiating oligodendrocytes to endogenous agonists. Here, we demonstrate that neuron-conditioned medium induces the transcriptionally mediated, time-regulated expression of GPR17 in Oli-neu, an oligodendrocyte precursor cell line, making these cells suitable for studying the endocytic traffic of the native receptor. Agonist-induced internalization, intracellular trafficking, and membrane recycling of GPR17 were analyzed by biochemical and immunofluorescence assays using an ad hoc-developed antibody against the extracellular N-terminal of GPR17. Both UDP-glucose and LTD4 increased GPR17 internalization, although with different efficiency. At early time points, internalized GPR17 co-localized with transferrin receptor, whereas at later times it partially co-localized with the lysosomal marker Lamp1, suggesting that a portion of GPR17 is targeted to lysosomes upon ligand binding. An analysis of receptor recycling and degradation demonstrated that a significant aliquot of GPR17 is recycled to the cell surface. Furthermore, internalized GPR17 displayed a co-localization with the marker of the “short loop” recycling endosomes, Rab4, while showing very minor co-localization with the “long loop” recycling marker, Rab11. Our results provide the first data on the agonist-induced trafficking of native GPR17 in oligodendroglial cells and may have implications for both physiological and pathological myelination. PMID:23288840

  19. The mitochondrial nucleoid protein, Mgm101p, of Saccharomyces cerevisiae is involved in the maintenance of rho(+) and ori/rep-devoid petite genomes but is not required for hypersuppressive rho(-) mtDNA.

    PubMed Central

    Zuo, Xiao Ming; Clark-Walker, G Desmond; Chen, Xin Jie

    2002-01-01

    The Saccharomyces cerevisiae MGM101 gene encodes a DNA-binding protein targeted to mitochondrial nucleoids. MGM101 is essential for maintenance of a functional rho(+) genome because meiotic segregants, with a disrupted mgm101 allele, cannot undergo more than 10 divisions on glycerol medium. Quantitative analysis of mtDNA copy number in a rho(+) strain carrying a temperature-sensitive allele, mgm101-1, revealed that the amount of mtDNA is halved each cell division upon a shift to the restrictive temperature. These data suggest that mtDNA replication is rapidly blocked in cells lacking MGM101. However, a small proportion of meiotic segregants, disrupted in MGM101, have rho(-) genomes that are stably maintained. Interestingly, all surviving rho(-) mtDNAs contain an ori/rep sequence. Disruption of MGM101 in hypersuppressive (HS) strains does not have a significant effect on the propagation of HS rho(-) mtDNA. However, in petites lacking an ori/rep, disruption of MGM101 leads to either a complete loss or a dramatically decreased stability of mtDNA. This discriminatory effect of MGM101 suggests that replication of rho(+) and ori/rep-devoid rho(-) mtDNAs is carried out by the same process. By contrast, the persistence of ori/rep-containing mtDNA in HS petites lacking MGM101 identifies a distinct replication pathway. The alternative mtDNA replication mechanism provided by ori/rep is independent of mitochondrial RNA polymerase encoded by RPO41 as a HS rho(-) genome is stably maintained in a mgm101, rpo41 double mutant. PMID:11973295

  20. Analysis of seasonal variation in urban heat island effect for West Mediterranean Region of Turkey using Landsat 8 OLI/TIRS data

    NASA Astrophysics Data System (ADS)

    Aslan, Nagihan; KOC-SAN, Dilek

    2016-07-01

    Technological developments are accelerating day by day in 21st century which has brought social and economic developments. Besides, the word population is increasing rapidly and the majority of population lives in city center. Large and crowded cities, industrial areas and shopping centers are being built for providing human needs and wishes. For these purposes, natural resources are destroyed and urban climate is affected. The temperatures of urban areas can be warmer than the rural areas and differences in temperature between urban and surrounding rural areas were defined as Urban Heat Island (UHI). The objectives of this study are (i) to calculate Land Surface Temperatures (LST) for urban and vegetation areas in the selected cities, (ii) to determine the UHI effects and its change between seasons, (iii) to examine the relationship between city size and UHI effect magnitude. In this study, Landsat 8 OLI/TIRS imageries for winter (23 December 2013), summer (17 June 2014) and autumn (7 October 2014) seasons were used. The Antalya, Burdur and Isparta provinces that are placed in West Mediterranean Region of Turkey were selected as study areas. These three provinces have different characteristics. Antalya is the fifth biggest city of Turkey and its population growth is quite high. In addition, the summer population of this city increases severely, because of its tourism potential. On the other hand, Isparta and Burdur are relatively small cities when compared to Antalya with respect to population and urban area. In this study, firstly, the brightness temperatures and LST values are calculated from Landsat 8 thermal images. Secondly, urban areas are identified by an approach that combines emissivity image, Defense Meteorological Satellite Program - Operational Linescan System (DMSP/OLS) nighttime lights data and ASTER Global Digital Elevation Model (GDEM). In addition, the vegetation areas are defined by using emissivity image. Finally, the UHI effect is determined

  1. Suzaku Observation of Strong Fluorescent Iron Line Emission from the Young Stellar Object V1647 Ori during Its New X-ray Outburst

    NASA Technical Reports Server (NTRS)

    Hamaguchi, Kenji; Grosso, Nicolas; Kastner, Joel H.; Weintraub, David A.; Richmond, Michael

    2009-01-01

    The Suzaku X-ray satellite observed the young stellar object V1647 Ori on 2008 October 8 during the new mass accretion outburst reported in August 2008. During the 87 ksec observation with a net exposure of 40 ks, V1647 Ori showed a. high level of X-ray emission with a gradual decrease in flux by a factor of 5 and then displayed an abrupt flux increase by an order of magnitude. Such enhanced X-ray variability was also seen in XMM-Newton observations in 2004 and 2005 during the 2003-2005 outburst, but has rarely been observed for other young stellar objects. The spectrum clearly displays emission from Helium-like iron, which is a signature of hot plasma (kT approx.5 keV). It also shows a fluorescent iron Ka line with a remarkably large equivalent width of approx. 600 eV. Such a, large equivalent width indicates that a part of the incident X-ray emission that irradiates the circumstellar material and/or the stellar surface is hidden from our line of sight. XMM-Newton spectra during the 2003-2005 outburst did not show a strong fluorescent iron Ka line ; so that the structure of the circumstellar gas very close to the stellar core that absorbs and re-emits X-ray emission from the central object may have changed in between 2005 and 2008. This phenomenon may be related to changes in the infrared morphology of McNeil's nebula between 2004 and 2008.

  2. Introduction à une théorie des systèmes composites : exemples simples de matériaux lamellaires

    NASA Astrophysics Data System (ADS)

    Akjouj, A.; Sylla, B.; Dobrzynski, L.

    This review paper is mostly an introduction to the linear response theory for composite systems. The composite materials are defined here as being formed by different homogeneous parts connected together by interfaces. This type of material can be constructed with the help of homogeneous "bricks" cuted out from infinite materials. This cutting procedures are realized with the help of cleavage operators. The "bricks" are then put together by a coupling operator. This construction manner enables to obtain for any composite system a general equation relating the composite response function (called also Green's function) to the elements of the infinite material response functions and to the cleavage and coupling operators. A general and unified formulation valid as well in matrix algebra as in the algebra of differential equations results from this approach. Any general theory is abstract ; simple examples help very much to understand it. The principal aim of this review paper is the introduction of a general theory for composite systems through simple and analytical examples from the fields of phonons, magnons and electrons in the lamellar composite materials. In order to achieve this goal, the algebra of the examples is as explicit as possible. The references of what was already realized in theory of composite response are discussed also. A prospective and non exhaustive study of all the fields where such a theory can prove to be helpful is given also in this review paper. Cet article de revue est essentiellement une introduction à la théorie de la réponse linéaire dans les systèmes composites. Les matériaux composites sont définis ici comme étant formés de parties homogènes différentes reliées par des interfaces. Ce type de matériaux peut être construit à partir de "briques" homogènes découpées dans des matériaux infinis. Ces opérations de découpage sont effectuées par l'intermédiaire d'opérateurs de clivage. Les "briques" sont ensuite

  3. Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.

    PubMed Central

    Ogasawara, N; Moriya, S; Yoshikawa, H

    1985-01-01

    We have determined nucleotide sequence of some 10,000 base pairs (bp) in the oriC region of the Bacillus subtilis chromosome. Initiation sites of transcription from this region were determined in vivo by the S1-mapping method. Five major initiation sites were found in the leader sequences of five open reading frames (ORF) deduced from the nucleotide sequence. The sixth site is located inside the ORF323("recF"). Putative promoters were found for each transcript. Function of these promoters was demonstrated in Escherichia coli by the Maxi-cell method using appropriate fragments cloned in pBR vectors. Based on these results, genes in 10,000 bp oriC region are divided into 4 transcriptional units. GyrB composes one unit with two other ORFs, while gyrA constitutes a single unit by itself. The promoters for ORF446("dnaA") and ORF378("dnaN") are located within the putative signal sequences for oriC. Transcription from these promoters is dependent on a dna-initiation gene, dnaB. Images PMID:2987848

  4. Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963.

    PubMed

    Henssge, Uta; Do, Thuy; Radford, David R; Gilbert, Steven C; Clark, Douglas; Beighton, David

    2009-03-01

    Actinomyces naeslundii is an important early colonizer in the oral biofilm and consists of three genospecies (1, 2 and WVA 963) which cannot be readily differentiated using conventional phenotypic testing or on the basis of 16S rRNA gene sequencing. We have investigated a representative collection of type and reference strains and clinical and oral isolates (n=115) and determined the partial gene sequences of six housekeeping genes (atpA, rpoB, pgi, metG, gltA and gyrA). These sequences identified the three genospecies and differentiated them from Actinomyces viscosus isolated from rodents. The partial sequences of atpA and metG gave best separation of the three genospecies. A. naeslundii genospecies 1 and 2 formed two distinct clusters, well separated from both genospecies WVA 963 and A. viscosus. Analysis of the same genes in other oral Actinomyces species (Actinomyces gerencseriae, A. israelii, A. meyeri, A. odontolyticus and A. georgiae) indicated that, when sequence data were obtained, these species each exhibited <90 % similarity with the A. naeslundii genospecies. Based on these data, we propose the name Actinomyces oris sp. nov. (type strain ATCC 27044(T) =CCUG 34288(T)) for A. naeslundii genospecies 2 and Actinomyces johnsonii sp. nov. (type strain ATCC 49338(T) =CCUG 34287(T)) for A. naeslundii genospecies WVA 963. A. naeslundii genospecies 1 should remain as A. naeslundii sensu stricto, with the type strain ATCC 12104(T) =NCTC 10301(T) =CCUG 2238(T). PMID:19244431

  5. ORAL MYOFUNCTIONAL AND ELECTROMYOGRAPHIC EVALUATION OF THE ORBICULARIS ORIS AND MENTALIS MUSCLES IN PATIENTS WITH CLASS II/1 MALOCCLUSION SUBMITTED TO FIRST PREMOLAR EXTRACTION

    PubMed Central

    de Souza, Denize Ramirez; Semeghini, Tatiana Adamov; Kroll, Lucio Benedito; Berzin, Fausto

    2008-01-01

    Objective: The aim of this study was to assess the presence of oral myofunctional alterations before and after first premolar extraction in Class II/1 malocclusion patients that could endanger the long-term dental arch stability. Material and Methods: The study was performed by means of morphological, functional and electromyographic analyses in 17 Class II/1 malocclusion patients (group T) and 17 Class I malocclusion patients (group C -control), both groups with 12-30-year age range (mean age: 20.93 ± 4.94 years). Results: Data analyzed statistically by Student's t-test showed a significant decrease (p<0.05) in the maxillary and mandibular dental arch perimeters after orthodontic treatment, but lip posture at rest did not present statistically significant differences after treatment (p>0.05). The Kruskal-Wallis test analyzed data from lip posture (orbicularis oris muscle) at rest and during swallowing, as well as the mentalis muscle behavior during the above-mentioned function, not showing statistically significant differences (p>0.05) after treatment (groups T1 and T2). However, group T differed significantly from group C (p<0.05). Lip posture during swallowing showed statistically significant differences (p<0.05) for subjects submitted to orthodontic therapy when compared to data acquired before the treatment. The electromyographic analysis confirmed these data. Conclusions: Found myofunctional alterations observed after the orthodontic treatment in Class II/1 malocclusion seemed to jeopardize the long-term orthodontic stability, making recurrence possible. PMID:19089223

  6. Eye-rima oris distance and its relation to the vertical dimension of occlusion measured by two methods: Anthropometric study in a sample of Yemeni dental students

    PubMed Central

    Alhajj, Mohammed Nasser; Khalifa, Nadia; Amran, Abdullah

    2016-01-01

    Objective: This study was conducted to evaluate the relationship between the distance measured from the distal outer of the eye to the parting line of the lips and the occlusal vertical dimension (OVD) measured by two methods. Methods: One hundred and fourteen dental students (76 males and 38 females) were recruited for this study with mean age (22.34 ± 1.83) years. The distance from distal canthus of the eye to rima oris (eye-RO) was compared with two different measurements of the OVD (nasal [N] to gnathion [Gn], and subnasal [Sn] to menton [Me]). All distances were measured using modified digital caliper. Results: Pearson correlation coefficient test for correlations and paired samples t-test for differences were used with a significant level of (P < 0.05). There was a positive significant correlation between the eye-RO distance and the two measurements of the OVD. However, this correlation was stronger between eye-RO and the distance from the tip of the nose to the tip of the chin than that between eye-RO and the distance from the septum of the nose to the under of the chin (r = 0.313 with P = 0.0007, r = 0.296 with P = 0.0014), respectively. Conclusion: The distance from the outer canthus of the eye to the parting of the lips seems to be a reliable method in predicting the OVD and should relate to the distance from the tip of the nose to the tip of the chin. PMID:27011736

  7. The Rep78 gene product of adeno-associated virus (AAV) self-associates to form a hexameric complex in the presence of AAV ori sequences.

    PubMed Central

    Smith, R H; Spano, A J; Kotin, R M

    1997-01-01

    The Rep78 and Rep68 proteins of adeno-associated virus (AAV) are replication initiator proteins that bind the viral replicative-form origin of replication, nick the origin in a site- and strand-specific fashion, and mediate vectorial unwinding of the DNA duplex via an ATP-dependent helicase activity, thus initiating a strand displacement mechanism of viral DNA replication. Genetic and biochemical studies have identified Rep mutants that demonstrate a trans-dominant negative phenotype in vitro and in vivo, suggesting the possibility that multimerization of Rep is essential for certain replicative functions. In this study, we have investigated the ability of the largest of the Rep proteins, Rep78, to self-associate in vitro and in vivo. Self-association of Rep78 in vivo was demonstrated through the use of a mammalian two-hybrid system. Rep-Rep protein interaction was confirmed in vitro through coimmunoprecipitation experiments with a bacterially expressed maltose-binding protein-Rep78 fusion protein in combination with [35S]methionine-labeled Rep78 synthesized in a coupled in vitro transcription-translation system. Mapping studies with N- and C-terminal truncation mutant forms of Rep indicate that amino acid sequences required for maximal self-association occur between residues 164 and 484. Site-directed mutagenesis identified two essential motifs within this 321-amino-acid region: (i) a putative alpha-helix bearing a 3,4-hydrophobic heptad repeat reminiscent of those found in coiled-coil domains and (ii) a previously recognized nucleoside triphosphate-binding motif. Deletion of either of these regions from the full-length polypeptide resulted in severe impairment of Rep-Rep interaction. In addition, gel filtration chromatography and protein cross-linking experiments indicated that Rep78 forms a hexameric complex in the presence of AAV ori sequences. PMID:9151837

  8. Physical parameters and long-term photometric variability of V1481 Ori, an SB2 member of Orion nebula Cluster with an accreting component

    NASA Astrophysics Data System (ADS)

    Messina, S.; Parihar, P.; Biazzo, K.; Lanza, A. F.; Distefano, E.; Melo, C. H. F.; Bradstreet, D. H.; Herbst, W.

    2016-04-01

    We present the results of our analysis on V1481 Ori (JW 239), a young SB2 in the Orion nebula Cluster with a circumbinary disc accreting on the lower mass component. The analysis is based on high-resolution spectroscopic data and high-quality photometric time series about 20-yr long. Thanks to the spectroscopy, we confirm the binary nature of this system consisting of M3 + M4 components and derive the mass ratio MB/MA = 0.54, a variable luminosity ratio LB/LA = 0.68-0.94, and an orbital period Porb = 4.433 d. The photometric data allowed us to measure the rotation periods of the two components Pphot = 4.4351 d and they are found to be synchronized with the orbital period. The simultaneous modelling of V-, I-band, and radial velocity curves in the 2005 season suggests that the variability is dominated by one hotspot on the secondary component covering at least ˜3.5 per cent of the stellar surface and about 420 K hotter than the unperturbed photosphere. Such a spot may originate from the material of the circumbinary disc accreting on to the secondary component. We also detect an apparent 6-yr periodic variation in the position of this hotspot, which is inferred from the phase migration of the light-curve maximum, which we interpret as due to either the presence of surface differential rotation as large as 0.065 per cent, a value compatible with the fully convective components, or to a periodic exchange of angular momentum between the disc and the star, which implies a minimum magnetic field strength of 650 G at the stellar surface.

  9. Effect of DNA extraction procedure, repeated extraction and ethidium monoazide (EMA)/propidium monoazide (PMA) treatment on overall DNA yield and impact on microbial fingerprints for bacteria, fungi and archaea in a reference soil

    PubMed Central

    Wagner, Andreas O.; Praeg, Nadine; Reitschuler, Christoph; Illmer, Paul

    2015-01-01

    Different DNA extraction protocols were evaluated on a reference soil. A wide difference was found in the total extractable DNA as derived from different extraction protocols. Concerning the DNA yield phenol–chloroform–isomyl alcohol extraction resulted in high DNA yield but also in a remarkable co-extraction of contaminants making PCR from undiluted DNA extracts impossible. By comparison of two different extraction kits, the Macherey&Nagel SoilExtract II kit resulted in the highest DNA yields when buffer SL1 and the enhancer solution were applied. The enhancer solution not only significantly increased the DNA yield but also the amount of co-extracted contaminates, whereas additional disintegration strategies did not. Although a three times repeated DNA extraction increased the total amount of extracted DNA, microbial fingerprints were merely affected. However, with the 5th extraction this changed. A reduction of total DGGE band numbers was observed for archaea and fungi, whereas for bacteria the diversity increased. The application of ethidium monoazide (EMA) or propidium monoazide (PMA) treatment aiming on the selective removal of soil DNA derived from cells lacking cell wall integrity resulted in a significant reduction of total extracted DNA, however, the hypothesized effect on microbial fingerprints failed to appear indicating the need for further investigations. PMID:26339125

  10. Cirrus cloud optical and microphysical property retrievals from eMAS during SEAC4RS using bi-spectral reflectance measurements within the 1.88 µm water vapor absorption band

    NASA Astrophysics Data System (ADS)

    Meyer, Kerry; Platnick, Steven; Arnold, G. Thomas; Holz, Robert E.; Veglio, Paolo; Yorks, John; Wang, Chenxi

    2016-04-01

    Previous bi-spectral imager retrievals of cloud optical thickness (COT) and effective particle radius (CER) based on the Nakajima and King (1990) approach, such as those of the operational MODIS cloud optical property retrieval product (MOD06), have typically paired a non-absorbing visible or near-infrared wavelength, sensitive to COT, with an absorbing shortwave or mid-wave infrared wavelength sensitive to CER. However, in practice it is only necessary to select two spectral channels that exhibit a strong contrast in cloud particle absorption. Here it is shown, using eMAS observations obtained during NASA's SEAC4RS field campaign, that selecting two absorbing wavelength channels within the broader 1.88 µm water vapor absorption band, namely the 1.83 and 1.93 µm channels that have sufficient differences in ice crystal single scattering albedo, can yield COT and CER retrievals for thin to moderately thick single-layer cirrus that are reasonably consistent with other solar and IR imager-based and lidar-based retrievals. A distinct advantage of this channel selection for cirrus cloud retrievals is that the below-cloud water vapor absorption minimizes the surface contribution to measured cloudy top-of-atmosphere reflectance, in particular compared to the solar window channels used in heritage retrievals such as MOD06. This reduces retrieval uncertainty resulting from errors in the surface reflectance assumption and reduces the frequency of retrieval failures for thin cirrus clouds.

  11. Accuracy and coverage assessment of Oryctolagus cuniculus (Rabbit) Genes Encoding Immunoglobulins in the Whole Genome Sequence Assembly (OryCun2.0) and Localization of the IGH Locus to Chromosome 20

    PubMed Central

    Gertz, E. Michael; Schäffer, Alejandro A.; Agarwala, Richa; Bonnet-Garnier, Amélie; Rogel-Gaillard, Claire; Hayes, Hélène; Mage, Rose G.

    2013-01-01

    We report analyses of genes encoding immunoglobulin heavy and light chains in the rabbit 6.51x whole genome assembly. This OryCun2.0 assembly confirms previous mapping of the duplicated IGK1 and IGK2 loci to chromosome 2 and the IGL lambda light chain locus to chromosome 21. The most frequently rearranged and expressed IGHV1 that is closest to IG DH and IGHJ genes encodes rabbit VHa allotypes. The partially inbred Thorbecke strain rabbit used for whole-genome sequencing was homozygous at the IGK but heterozygous with the IGHV1a1 allele in one of 79 IGHV-containing unplaced scaffolds and IGHV1a2, IGHM, IGHG and IGHE sequences in another. Some IGKV, IGLV and IGHA genes are also in other unplaced scaffolds. By fluorescence in situ hybridization, we assigned the previously unmapped IGH locus to the q-telomeric region of rabbit chromosome 20. An approximately 3 Mb segment of human chromosome 14 including IGH genes predicted to map to this telomeric region based on synteny analysis could not be located on assembled chromosome 20. Unplaced scaffold chrUn0053 contains some of the genes that comparative mapping predicts to be missing. We identified discrepancies between previous targeted studies and the OryCun2.0 assembly and some new BAC clones with IGH sequences that can guide other studies to further sequence and improve the OryCun2.0 assembly. Complete knowledge of gene sequences encoding variable regions of rabbit heavy, kappa and lambda chains will lead to better understanding of how and why rabbits produce antibodies of high specificity and affinity through gene conversion and somatic hypermutation. PMID:23925440

  12. Mining the HST "Advanced Spectral Library (ASTRAL)": Winds of the Evolved M Stars Alpha Ori (M2 Iab) and Gamma Cru (M3.4 III)

    NASA Astrophysics Data System (ADS)

    Carpenter, Kenneth G.; Nielsen, Krister E.; Kober, Gladys V.; Ayres, Thomas R.

    2015-01-01

    The "Advanced Spectral Library (ASTRAL) Project: Cool Stars" (PI = T. Ayres) is an HST Cycle 18 Treasury Program that collected a definitive set of representative, high-resolution (R=30,000-100,000) and high signal/noise (S/N>100) UV spectra of eight F-M evolved cool stars. These extremely high-quality STIS UV echelle spectra are available from the HST archive and through the ASTRAL website at the University of Colorado at http://casa.colorado.edu/~ayres/ASTRAL/ and will enable investigations of a broad range of problems -- stellar, interstellar, and beyond -- for many years. In this paper, we examine the wealth of wind diagnostics contained in the very rich spectra of the two evolved M stars in the sample, the M3.4 III giant Gamma Crucis (GaCrux) and the M2 Iab supergiant Alpha Orionis (Betelgeuse) and characterize the winds at the time of these STIS observations in 2011 and compare the results with those obtained from more limited data taken at earlier epochs with HST/GHRS and IUE. In particular we study the variation of the numerous Fe II profiles with intrinsic strength in the two stars. The shifting wavelengths of the wind absorptions relative to the emission peaks and the changes in relative strengths of the emission peaks reflect the acceleration of the wind from the base of the chromosphere. Although the characteristics of the Gamma Cru wind are relatively stable with time, the Alpha Ori wind outflow appears significantly smaller than seen by Carpenter et al. (1997, ApJ, 479, 970) in GHRS observations taken in 1992 (and in earlier IUE observations). There might in fact be evidence in these STIS spectra that the outflow has turned into an inflow, as reported at epochs prior to IUE by Boesgaard and Magnan (1975 ApJ 198, 369) and Boesgaard (1979 ApJ 232, 485) based on a limited number of lines in the extreme blue end of ground-based spectra.

  13. U-Pb zircon and biostratigraphic data of high-pressure/low-temperature metamorphic rocks of the Talea Ori: tracking the Paleotethys suture in central Crete, Greece

    NASA Astrophysics Data System (ADS)

    Zulauf, G.; Dörr, W.; Krahl, J.; Lahaye, Y.; Chatzaras, V.; Xypolias, P.

    2016-03-01

    Inherited deformation microfabrics of detrital quartz grains and U-Pb (Laser ablation (LA)-ICPMS and ID TIMS) ages of detrital zircons separated from the Phyllite-Quartzite Unit s.l. of the Talea Ori, central Crete, suggest strikingly different source rocks. Albite gneiss of the lower Rogdia Beds includes Cambrian and Neoproterozoic rounded zircons with main U-Pb age peaks at 628 and 988 Ma. These and minor Paleoproterozoic and Archean peaks, together with the lack of Variscan-aged and Mesoproterozoic zircons, are similar to the age spectra obtained from the Phyllite-Quartzite Unit s.str. of the Peloponnesus and eastern Crete and from the Taurides. All of these zircons should be derived from the northeastern passive margin of Gondwana (Cimmeria). Metatuffites of the uppermost Rogdia Beds and metasandstone of Bali beach, on the other hand, include euhedral detrital zircons displaying a Variscan U-Pb age spectra at ca. 300 Ma with concordia ages at 291 ± 3, 300 ± 1 Ma (Rogdia) and 286 ± 3, 300 ± 3, 313 ± 2 Ma (Bali). Both types of metasediments and their zircons are similar to those of the pre-Alpine basement and overlying Tyros Beds of eastern Crete, revealing a provenance at the southern active margin of Laurasia. Thus, in central Crete the Paleotethys suture should be situated inside the Rogdia Beds. Magmatic zircons separated from a rhyolite boulder of the lower Achlada Beds yielded a concordant U-Pb zircon age at 242 ± 2 Ma placing a maximum age for the deposition of the (meta)conglomerate from which the boulder was collected. This age is compatible with an Olenekian-early Anisian age of the underlying Vasilikon marble suggested by new findings of the foraminifera Meandrospira aff. pusilla. Both the Achlada Beds and the Vasilikon marble can be attributed to the lower Tyros Beds of eastern Crete. The Alpine deformation led to a pervasive mylonitic foliation, which is affecting most of the studied rocks. This foliation results from D2 top

  14. Organochlorines and heavy metals in wild caught food as a potential human health risk to the indigenous Māori population of South Canterbury, New Zealand.

    PubMed

    Stewart, Michael; Phillips, Ngaire R; Olsen, Greg; Hickey, Christopher W; Tipa, Gail

    2011-05-01

    Increasing concentrations of anthropogenic contaminants in wild kai (food) of cultural, recreational and economic importance to the indigenous Māori of New Zealand is a potential human health risk. Contaminants that are known to bioaccumulate through the food chain (e.g., organochlorine pesticides (OCPs), PCBs and selected heavy metals) were analysed in important kai species including eel (Anguilla sp.), brown trout (Salmo trutta), black flounder (Rhombosolea retiaria) and watercress (Nasturtium officinale) from important harvesting sites in the region of South Canterbury. Eels contained relatively high wet weight concentrations of p,p'-DDE (8.6-287ng/g), PCBs ((32)Σ(PCB); 0.53-58.3ng/g), dieldrin (<0.05-16.3ng/g) and Σchlordanes (0.03-10.6ng/g). Trout and flounder contained lower concentrations of organochlorines than eels, with p,p'-DDE wet weight concentrations ranging from 2.2 to 18.5ng/g for trout and 6.4 to 27.8ng/g for flounder. Total arsenic wet weight concentrations were below detection limits for eels but ranged from 0.27 to 0.89μg/g for trout and 0.12 to 0.56μg/g for flounder. Mercury concentrations ranged from 0.02 to 0.56μg/g, 0.11 to 0.50μg/g and 0.04 to 0.10μg/g (ww) for eel, trout and flounder respectively. Lifetime excess cancer risk was calculated through established risk assessment procedures, highlighting dieldrin, ΣPCBs and p,p'-DDE in eels and arsenic in trout and flounder as primary contaminants of concern. A second non-cancer chronic health risk assessment indicated that mercury and PCBs were a potential concern in eels and mercury in trout. A cumulative lifetime cancer risk assessment showed potential health risk for consumption of some species, even at low consumption rates and provided the basis for establishing recommended dietary consumption limits for harvest sites within the study region. PMID:21402398

  15. Hanahau'oli School: Theory Meets Practice

    ERIC Educational Resources Information Center

    Peters, Robert

    2015-01-01

    Progressive schools, by their very nature, need to respond to changing societal conditions. Within that context, learning guided by the teachings of John Dewey will not only make the progressive tradition sustainable but also make it increasingly relevant in a future that will increasingly make demands on students to possess the knowledge to…

  16. Compilation and Analysis of a Database of Local Tsunami Bulletins issued by the Pacific Tsunami Warning Center (PTWC) to the Hawaii Emergency Management Agency (HI-EMA) between September 2003 and July, 2015

    NASA Astrophysics Data System (ADS)

    Sardina, V.; Koyanagi, K. K.; Walsh, D.; Becker, N. C.; McCreery, C.

    2015-12-01

    The PTWC functions not only as official international tsunami warning center (TWC) for nations with coasts around the Pacific rim, the Caribbean, and other regions of the world, but also as the local TWC for the State of Hawaii. The PTWC began sending local tsunami messages to HI-EMA only since September, 2003. As part of its routine operations, the PTWC strives to send a local tsunami message product for any Hawaii earthquake with a 4.0 magnitude or larger within five minutes of origin time. To evaluate PTWC's performance in that regard, however, we must first compile a suitable local tsunami bulletins' database. For this purpose, we scanned all the available logs for the Federal Aviation Administration (FAA) communications' circuit between 2003 and 2015 and retrieved 104 local bulletins. We parsed these bulletins and extracted the parametric data needed to evaluate PTWC's performance in terms of essential statistics such as message delay time, epicenter offsets, and magnitude residuals as compared with more authoritative earthquake source parametrizations. To that end, we cross-validated 88 of these seismic events having magnitudes between 2.8 and 6.7 with the corresponding source parameters obtained from the USGS Hawaiian Volcano Observatory (HVO) and the National Earthquake Information Center's (NEIC) online catalog. Analysis of events with magnitude 4.0 or larger gives a median message delay time of 3 minutes and 33 seconds, a median epicentral offset of 3.2 km, and a median magnitude residual of 0.2 unit. Several message delay outliers exist due to the fact that PTWC has sent local tsunami information statements (TIS) for felt events with magnitudes as small as 2.8 located west of the Big Island. Routine use of a synthetic Wood-Anderson magnitude since the end of 2012 appears to have brought consistency to PTWC's local magnitude estimates and a reduction in the message delays. Station site corrections, a refined attenuation model, and optimization of the peak

  17. Intravenous iron-containing products: EMA procrastination.

    PubMed

    2014-07-01

    A European reassessment has led to identical changes in the summaries of product characteristics (SPCs) for all intravenous iron-containing products: the risk of serious adverse effects is now highlighted, underlining the fact that intravenous iron-containing products should only be used when the benefits clearly outweigh the harms. Unfortunately, iron dextran still remains on the market despite a higher risk of hypersensitivity reactions than with iron sucrose. PMID:25162093

  18. [Noma/Cancrum oris: a neglected disease].

    PubMed

    García-Moro, Maria; García-Merino, Enrique; Martín-Del-Rey, Angel; García-Sánchez, Enrique; García-Sánchez, José Elías

    2015-10-01

    Noma is an aggressive orofacial gangrenous pathology that damages hard and soft tissues of the mouth and the face. Throughout the centuries it has been present around the globe, but nowadays it has practically disappeared from developed countries and mainly affects children from the most disadvantaged places, especially in Africa. Noma disease is a multifactorial process; malnutrition, debilitating diseases (bacterial or viral systemic diseases, HIV-associated immunosuppression, etc.) and intraoral infections are some of the factors implied. The characteristic tissue necrosis is produced by a polymicrobial infection. Fusobacterium necrophorum, Prevotella intermedia, Prevotella melaninogenica, Fusobacterium nucleatum, Bacteroides fragilis, Bacillus cereus, Trueperella pyogenes, spyrochetes, etc, are some of the species that have been isolated from the affected areas. Without treatment, noma is lethal in a short period of time, and the patients that survive show severe sequelae that hinder their life and interpersonal relationships. The aim of this paper is to unify the existing information and to promote wider knowledge and awareness among the population. PMID:26437752

  19. [MUC1 (EMA): A key molecule of carcinogenesis?].

    PubMed

    Leroy, Xavier; Buisine, Marie-Pierre; Leteurtre, Emmanuelle; Aubert, Sebastien; Buob, David; Porchet, Nicole; Copin, Marie-Christine

    2006-09-01

    MUC1 is a large trans-membrane highly glycosylated mucin which is expressed at the apical pole of normal cells in glandular epithelia. MUC1 is implicated in many physiological mechanisms such as adhesion, development and differentiation. Also, MUC1 is frequently deregulated and over-expressed with a membrane circumferential and/or cytoplasmic expression. The intracellular tail of MUC1 is phosphorylated and can interact with many signalling proteins and transcriptional factors. Indeed, MUC1 can interact with B-catenin competitively for E-cadherin, thus destabilizing intercellular junctions and favouring metastatic dissemination. In carcinomas, the overexpression and membrane delocalization of MUC1 is associated with a worse prognosis and a shorter survival in breast, colon, kidney, prostate or gastro-intestinal cancers. MUC1 appears to be a novel therapeutic target for immunotherapy or anti-tumour vaccines. PMID:17128152

  20. Energy Materials Coordinating Committee (EMaCC). Fiscal year 1994

    SciTech Connect

    1995-07-31

    The committee serves primarily to enhance coordination among the Department`s materials programs and to further effective use of materials expertise within the Department. This is accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops involving DOE and major contractors. The program descriptions consist of a funding summary for each Assistant Secretary office and the Office of Energy Research, and detailed project summaries with project goals and accomplishments. A FY 1994 budget summary table for each program is included. A directory and a keyword index is included at the end of this document.

  1. EMAS recommendations for conditions in the workplace for menopausal women.

    PubMed

    Griffiths, Amanda; Ceausu, Iuliana; Depypere, Herman; Lambrinoudaki, Irene; Mueck, Alfred; Pérez-López, Faustino R; van der Schouw, Yvonne T; Senturk, Levent M; Simoncini, Tommaso; Stevenson, John C; Stute, Petra; Rees, Margaret

    2016-03-01

    Women form a large part of many workforces throughout Europe. Many will be working throughout their menopausal years. Whilst the menopause may cause no significant problems for some, for others it is known to present considerable difficulties in both their personal and working lives. During the menopausal transition women report that fatigue and difficulties with memory and concentration can have a negative impact on their working lives. Furthermore, hot flushes can be a source of embarrassment and distress. Some consider that these symptoms can impact on their performance. Greater awareness among employers, together with sensitive and flexible management can be helpful for women at this time. Particular strategies might include: fostering a culture whereby employees feel comfortable disclosing health problems, allowing flexible working, reducing sources of work-related stress, providing easy access to cold drinking water and toilets, and reviewing workplace temperature and ventilation. PMID:26857884

  2. Measurements at the ISL-EMA 1 railgun facility

    SciTech Connect

    Peter, H.; Wey, J. )

    1991-01-01

    In this paper the instrumentation of a 500 kJ, 15 mm bore diameter railgun and the power switching are described in detail. Emphasis has been laid on electro-optical measurement techniques. The presented results include electrical measurements on the switching circuit, breech and muzzle voltages and projectile position. In addition, material problems concerning rail erosion with plasma-driven projectiles are discussed. After some ten shots with peak currents up to 600 kA, rails and insulators were fully operational. The rail material loss has been tolerable. The surface roughness increased remarkably, due to the formation of a porous heterogeneous, nearly insulating surface layer of variable thickness.

  3. Learning about Inclusion by Listening to Ma¯ori

    ERIC Educational Resources Information Center

    Berryman, Mere; Woller, Paul

    2013-01-01

    Behavioural and learning difficulties experienced by students from minoritised cultural groups often arise because their cultural beliefs, values and preferred practices differ markedly from those of their teachers and their school. Research in New Zealand has shown that if inclusive education is to have real meaning for these students and their…

  4. Microbiological understandings and mysteries of noma (cancrum oris).

    PubMed

    Falkler, W A; Enwonwu, C O; Idigbe, E O

    1999-04-01

    The microbiologic history of noma was reviewed. Studies have associated the disease process with large numbers of fusiform bacilli and spirochetal organisms. In order to study the microbiology of the staging and infection periods of noma 62 Nigerian children, aged 3-14 years, 22 children had acute necrotizing ulcerative gingivitis (ANUG) and were also malnourished, 20 exhibited no acute necrotizing ulcerative gingivitis but were malnourished and 20 were free of acute necrotizing ulcerative gingivitis and in good nutritional state) were evaluated for the presence of viruses and oral microorganisms. The ANUG cases in the malnourished children had a higher incidence of Herpesviridae, the main virus being detected was cytomegalovirus. There were more anaerobic microorganisms recovered, with Prevotella intermedia as the predominant isolate, in the malnourished children as compared to the healthy children. A study of the predominant microflora in active sites of noma lesions was carried out in eight noma patients, 3-15 years of age, in Sokoto State, northwestern Nigeria. Fusobacterium necrophorum was recovered from 87.5% of the noma lesions. Oral microorganisms isolated included Prevotella intermedia, alpha-hemolytic streptococci and Actinomyces spp. which were isolated from 75.0, 50.0 and 37.5% of the patients, respectively. Peptostreptococcus micros, Veillonella parvula, Staphylococcus aureus and Pseudomonas spp. were each recovered from one lesion. All strains were observed to be sensitive to all of the antibiotics tested with the exception of one strain of P. intermedia which showed resistance to penicillin. The pathogenic mechanisms of F. necrophorum as a trigger organism were discussed. The isolation from human noma lesions of F. necrophorum, a pathogen primarily associated with animal diseases, may have important etiologic and animal transmission implications. PMID:10522213

  5. Motor fuel additive and ori-inhibited motor fuel composition

    SciTech Connect

    Sung, R.L.

    1989-09-26

    This patent describes a composition. It is obtained by reacting, at a temperature of 30{sup 0}C-200C 0.5-2.5 moles of one or more aliphatic carboxylic acids selected from the group consisting of formic, acetic, propionic, butyric, isobutyric, valeric, pivalic, acrylic, propiolie, methacylic, crotonic, isocrfotonic, maleic and fumaric acid; and 0.5-1.5 moles of a polyoxyalkylene diamine.

  6. An Estimation Method of the Vegetation Fractions for Landsat-8/OLI

    NASA Astrophysics Data System (ADS)

    Ito, Seiji; Oguro, Yoshinari; Matsuo, Takanori

    In recent years, the Urban Heat Island (UHI) in a city is one of the environmental issues. Increase green spaces (e.g. tree planting, roof or wall greening) has been possible to inhibit air temperature in the city, thus the acts of urban greening are promoted. The vegetation cover classification in a large area is one of the most important data in the analysis or monitoring of the UHI. Although high-resolution satellite images (a few meters per a pixel) are valuable data for analysis of the vegetation, we cannot obtain the images periodically for high costs. Moreover, it is difficult to analyze the high-resolution images since the images have the several noises (e.g. shades of buildings, small objects). Data of the Landsat-8 satellite which had launched on Feb. 2013 are freely available from the USGS and are spatial resolution of 30 meters (visible, NIR, SWIR). The aim of this study is to estimate of the mixture ratios of the endmembers from the data in urban area in order to generate vegetation maps in the area. The number of the endmembers is two: "Vegetation" and "Non-vegetation". The Nonlinear Spectral Mixture Model (NSMM) had been proposed by Somers et al. 2009. The NSMM considers second-order interaction (e.g. second reflections) between endmembers. Oyamada et al. 2012 have proposed the topsoil ratio using the unit vectorized reflectance to reduce the difference of brightness (sunny or shade places). In this paper, we have analyzed if NSMM is represented as the influence of second reflections by using the unit vectorized reflectance, and also have analyzed the enhanced NSMM which we had proposed. As the result, Estimation of the vegetation fraction has been influenced by NSMM in a residential region which have several features. Therefore, we have suggested beneficial effect of NSMM for the second reflections.

  7. EMAS position statement: The ten point guide to the integral management of menopausal health.

    PubMed

    Neves-E-Castro, Manuel; Birkhauser, Martin; Samsioe, Goran; Lambrinoudaki, Irene; Palacios, Santiago; Borrego, Rafael Sanchez; Llaneza, Placido; Ceausu, Iuliana; Depypere, Herman; Erel, C Tamer; Pérez-López, Faustino R; Schenck-Gustafsson, Karin; van der Schouw, Yvonne T; Simoncini, Tommaso; Tremollieres, Florence; Rees, Margaret

    2015-05-01

    With increased longevity and more women becoming centenarians, management of the menopause and postreproductive health is of growing importance as it has the potential to help promote health over several decades. Women have individual needs and the approach needs to be personalised. The position statement provides a short integral guide for all those involved in menopausal health. It covers diagnosis, screening for diseases in later life, treatment and follow-up. PMID:25757366

  8. Design of a ZVS PWM inverter for a brushless DC motor in an EMA application

    NASA Technical Reports Server (NTRS)

    Bell, J. Brett; Nelms, R. M.; Shepherd, Michael T.

    1993-01-01

    The Component Development Division of the Propulsion Laboratory at Marshall Space Flight Center (MSFC) is currently investigating the use of electromechanical actuators for use in space transportation applications such as Thrust Vector Control (TVC). These high power servomechanisms will require rugged, reliable, and compact power electronic modules capable of modulating several hundred amperes of current at up to 270 Vdc. This paper will discuss the design and implementation of a zero-voltage-switched PWM (Pulse Width Modulation) inverter which operates from a 270 Vdc source at currents up to 100 A.

  9. Design of a ZVS PWM inverter for a brushless DC motor in an EMA application

    NASA Astrophysics Data System (ADS)

    Bell, J. Brett; Nelms, R. M.; Shepherd, Michael T.

    The Component Development Division of the Propulsion Laboratory at Marshall Space Flight Center (MSFC) is currently investigating the use of electromechanical actuators for use in space transportation applications such as Thrust Vector Control (TVC). These high power servomechanisms will require rugged, reliable, and compact power electronic modules capable of modulating several hundred amperes of current at up to 270 Vdc. This paper will discuss the design and implementation of a zero-voltage-switched PWM (Pulse Width Modulation) inverter which operates from a 270 Vdc source at currents up to 100 A.

  10. Energy Materials Coordinating Committee (EMaCC): Fiscal year 1986, Annual technical report

    SciTech Connect

    1987-05-01

    The first part of the Program Descriptions consists of a funding summary for each Assistant Secretary office and the Office of Energy Research. This is followed by a summary of project titles and objectives, including the program/project manager(s) and principal investigator. The second part of the Program Descriptions consists of more detailed project summaries with project goals and accomplishments. They are for the Offices of Conservation and Renewable Energy, Energy Research, Nuclear Energy, Civilian Radioactive Waste Management, and Fossil Energy. Each of these are numbered for purposes of reference in the Keyword Index. The FY 1986 Budget Summary for materials activities in each of the 29 programs within the DOE are also included.

  11. Energy materials coordinating committee (EMaCC). Annual technical report, fiscal year 1998

    SciTech Connect

    none,

    1999-07-31

    The FY 1998 budget summary for DOE Materials Activities is presented on pages 7 and 8. The distribution of these funds between DOE laboratories, private industry, academia and other organizations is presented in tabular form on page 9. Following the budget summary is a set of detailed program descriptions for the FY 1998 DOE Materials activities. These descriptions are presented according to the organizational structure of the Department. A mission statement, a budget summary listing the project titles and FY 1998 funding, and detailed project summaries are presented for each Assistant Secretary office and the Office of Energy Research. The project summaries also provide DOE, laboratory, academic and industrial contacts for each project, as appropriate.

  12. Consumer's risk in the EMA and FDA regulatory approaches for bioequivalence in highly variable drugs.

    PubMed

    Muñoz, Joel; Alcaide, Daniel; Ocaña, Jordi

    2016-05-30

    The 2010 US Food and Drug Administration and European Medicines Agency regulatory approaches to establish bioequivalence in highly variable drugs are both based on linearly scaling the bioequivalence limits, both take a 'scaled average bioequivalence' approach. The present paper corroborates previous work suggesting that none of them adequately controls type I error or consumer's risk, so they result in invalid test procedures in the neighbourhood of a within-subject coefficient of variation osf 30% for the reference (R) formulation. The problem is particularly serious in the US Food and Drug Administration regulation, but it is also appreciable in the European Medicines Agency one. For the partially replicated TRR/RTR/RRT and the replicated TRTR/RTRT crossover designs, we quantify these type I error problems by means of a simulation study, discuss their possible causes and propose straightforward improvements on both regulatory procedures that improve their type I error control while maintaining an adequate power. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26707698

  13. Compliance to Cell Phone-Based EMA Among Latino Youth in Outpatient Treatment.

    PubMed

    Comulada, W Scott; Lightfoot, Marguerita; Swendeman, Dallas; Grella, Christine; Wu, Nancy

    2015-01-01

    Outpatient treatment practices for adolescent substance users utilize retrospective self-report to monitor drug use. Cell phone-based ecological momentary assessment (CEMA) overcomes retrospective self-report biases and can enhance outpatient treatment, particularly among Latino adolescents, who have been understudied with regard to CEMA. This study explores compliance to text message-based CEMA with youth (n = 28; 93% Latino) in outpatient treatment. Participants were rotated through daily, random, and event-based CEMA strategies for 1-month periods. Overall compliance was high (>80%). Compliance decreased slightly over the study period and was less during random versus daily strategies and on days when alcohol use was retrospectively reported. Findings suggest that CEMA is a viable monitoring tool for Latino youth in outpatient treatment, but further study is needed to determine optimal CEMA strategies, monitoring time periods, and the appropriateness of CEMA for differing levels of substance use. PMID:26114764

  14. Energy materials coordinating committee (EMaCC). Annual technical report, fiscal year 1995

    SciTech Connect

    none,

    1996-12-01

    The FY 1995 budget summary table for DOE Materials Activities is presented on pages 6-8. Following the budget summary table is a set of detailed program descriptions for the FY 1995 DOE Materials activities. These descriptions are presented according to the organizational structure of the Department A mission statement a budget summary table listing the project titles and FY 1995 funding, and detailed project summaries are presented for each Assistant Secretary office and the Office of Energy Research. The project summaries also provide DOE, laboratory, academic and industrial contacts for each project as appropriate.

  15. Oak Ridge Environmental Information System (ORIES) site workstation information packet for OREIS V1. 2

    SciTech Connect

    Voorhees, L.D.; McCord, R.A.; Durfee, R.C.; Land, M.L.; Olson, R.J.; Palmer, M.R.; Thomas, J.K.; Tinnel, E.P.; Zygmunt, B.C.

    1993-02-01

    The OREIS site workstation information packet was developed to accompany the OREIS site workstations, which are being delivered to the Environmental Restoration programs at the five DOE-OR sites. The packet is written specifically for the Site ER program staff at each of the five Sites who have been designated the OREIS contact by their ER program manager, and is not intended for general distribution. The packet provides an overview of the components of OREIS, points to more detailed information provided in the accompanying vendor and OREIS developed manuals, and includes information on training opportunities and user support.

  16. Evidences for a large hot spot on the disk of Betelgeuse (α Ori)

    NASA Astrophysics Data System (ADS)

    Montargès, M.; Kervella, P.; Perrin, G.; Chiavassa, A.; Le Bouquin, J. B.

    2015-01-01

    Massive evolved stars contribute to the chemical enrichment of the Galaxy. When they die as supernova but also through their mass loss during the several thousands of years of their red supergiant (RSG) phase. Unfortunately the mass loss mechanism remains poorly understood. Detailed study of the CSE and photosphere of nearby RSGs is required to constrain this scenario. Betelgeuse is the closest RSG (197 pc) and therefore has a large apparent diameter (~ 42 mas) which makes it a very interesting target. For several years, our team has lead a multi-wavelength and multi-scale observing program to characterize its mass loss. We will review here our recent results in near-infrared interferometry.

  17. Interstitial photodynamic therapy for cancers of cavum oris, skin, and cervix

    NASA Astrophysics Data System (ADS)

    Zeng, Chaoying; Yang, Dong; Wang, Kaihua; Cao, Qingqing

    1993-03-01

    Interstitial photodynamic therapy, in which the straight cut optical fiber was directly inserted into tumors and the insertion points were rationally arranged on an entire lesion area, was performed on 31 oral cancers, 6 skin cancers, and 4 cervix cancers in 41 patients. A highly satisfactory rate of complete response (90%) was obtained via only one treatment. And no severe complication occurred in any of the treatments. The follow-up record for 33 cases with a CR curative effect shows 12 cases have survived free of tumor more than 4 years and only 5 cases relapsed within a year. In this paper, the factors affecting therapeutic effectiveness and the selection of indication are discussed.

  18. Design and process of the EMA Cohort Study: the value of antenatal education in childbirth and breastfeeding

    PubMed Central

    Paz-Pascual, Carmen; Pinedo, Isabel Artieta; Grandes, Gonzalo; de Gamboa, Gurutze Remiro Fernandez; Hermosilla, Itziar Odriozola; de la Hera, Amaia Bacigalupe; Gordon, Janire Payo; Garcia, Guadalupe Manzano; de Pedro, Magdalena Ureta

    2008-01-01

    Background Antenatal education (AE) started more than 30 years ago with the purpose of decreasing pain during childbirth. Epidural anaesthesia has achieved this objective, and the value of AE is therefore currently questioned. This article describes the protocol and process of a study designed to assess AE results today. Methods/Design A prospective study was designed in which a cohort of 616 nulliparous pregnant women attending midwife offices of the Basque Health Service were followed for 13 months. Three exposure groups were considered based on the number of AE sessions attended: (a) women attending no session, (b) women attending 1 to 4, and (c) women attending 5 or more sessions. Sociodemographic, personality, and outcome variables related to childbirth and breastfeeding were measured. It was expected 40% of pregnant women not to have participated in any AE session. However, 93% had attended at least one session. This low exposure variability decreased statistical power of the study as compared to the initially planned power. Despite this, there was a greater than 80% power for detecting as significant differences between exposure groups of, for instance, 10% in continuation of breastfeeding at one and a half months and in visits for false labour. Women attending more sessions were seen to have a mean higher age and educational level, and to belong to a higher socioeconomic group (p < 0.01). Follow-up was completed in 99% of participants. Discussion Adequate prior estimation of variability in the exposure under study is essential for designing cohort studies. Sociodemographic characteristics may play a confounding role in studies assessing AE and should be controlled in design and analyses. Quality control during the study process and continued collaboration from both public system midwives and eligible pregnant women resulted in a negligible loss rate. PMID:18435856

  19. Developmental Changes in the Variability of Tongue and Lip Movements during Speech from Childhood to Adulthood: An EMA Study

    ERIC Educational Resources Information Center

    Murdoch, Bruce E.; Cheng, Hei-Yan; Goozee, Justine V.

    2012-01-01

    This study investigated the developmental variability of lip and tongue movement in 48 children and adults. Motion of the tongue-tip, tongue-body and lower lip was recorded using electromagnetic articulography during productions of sentences containing /t/, /s/, /l/, /k/ and /p/. Four groups of speakers participated in the study: (1) aged 6-7…

  20. A Bivariate Mixed-Effects Location-Scale Model with application to Ecological Momentary Assessment (EMA) data

    PubMed Central

    Pugach, Oksana; Hedeker, Donald; Mermelstein, Robin

    2014-01-01

    A bivariate mixed-effects location-scale model is proposed for estimation of means, variances, and covariances of two continuous outcomes measured concurrently in time and repeatedly over subjects. Modeling the two outcomes jointly allows examination of BS and WS association between the outcomes and whether the associations are related to covariates. The variance-covariance matrices of the BS and WS effects are modeled in terms of covariates, explaining BS and WS heterogeneity. The proposed model relaxes assumptions on the homogeneity of the within-subject (WS) and between-subject (BS) variances. Furthermore, the WS variance models are extended by including random scale effects. Data from a natural history study on adolescent smoking are used for illustration. 461 students, from 9th and 10th grades, reported on their mood at random prompts during seven consecutive days. This resulted in 14,105 prompts with an average of 30 responses per student. The two outcomes considered were a subject’s positive affect and a measure of how tired and bored they were feeling. Results showed that the WS association of the outcomes was negative and significantly associated with several covariates. The BS and WS variances were heterogeneous for both outcomes, and the variance of the random scale effects were significantly different from zero. PMID:25541578

  1. 75 FR 9019 - Notice of Receipt of Petition for Decision That Nonconforming 2009 AL Spaw EMA Mobile Stage...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-26

    ..., 2000 (65 FR 19477-78). How to Read Comments submitted to the Docket: You may read the comments received...: installation of conforming rear reflex reflectors, license plate lamps, rear side marker lamps, front side marker lamps, intermediate side markers lamps, rear side reflex reflectors, front side reflex...

  2. Oak Ridge Environmental Information System (ORIES) site workstation information packet for OREIS V1.2. Environmental Restoration Program

    SciTech Connect

    Voorhees, L.D.; McCord, R.A.; Durfee, R.C.; Land, M.L.; Olson, R.J.; Palmer, M.R.; Thomas, J.K.; Tinnel, E.P.; Zygmunt, B.C.

    1993-02-01

    The OREIS site workstation information packet was developed to accompany the OREIS site workstations, which are being delivered to the Environmental Restoration programs at the five DOE-OR sites. The packet is written specifically for the Site ER program staff at each of the five Sites who have been designated the OREIS contact by their ER program manager, and is not intended for general distribution. The packet provides an overview of the components of OREIS, points to more detailed information provided in the accompanying vendor and OREIS developed manuals, and includes information on training opportunities and user support.

  3. A Biomechanical Modeling Study of the Effects of the Orbicularis Oris Muscle and Jaw Posture on Lip Shape

    ERIC Educational Resources Information Center

    Stavness, Ian; Nazari, Mohammad Ali; Perrier, Pascal; Demolin, Didier; Payan, Yohan

    2013-01-01

    Purpose: The authors' general aim is to use biomechanical models of speech articulators to explore how possible variations in anatomical structure contribute to differences in articulatory strategies and phone systems across human populations. Specifically, they investigated 2 issues: (a) the link between lip muscle anatomy and variability in…

  4. Structure de l'univers - quand l'observation guide la théorie... ou pas

    NASA Astrophysics Data System (ADS)

    Nazé, Yaël

    The scientific method is often presented, e.g. to children, as a linear process, starting by a question and ending by the elaboration of a theory, with a few experiments in-between. The reality of the building of science is much more complex, with back-and-forth motions between theories and observations, with some intervention of technology and randomness. This complex process is not always correctly understood and assimilated, even amongst scientists. The hero cult, mixed with some revisionism, still exists despite in-depth historical studies. In this context, it may be useful to comparatively examine the reaction to crucial observations, their interpretation and their impact on the contemporaneous theory development. Four examples are presented here, all linked to the question of the 'construction of the heavens' but at different epochs.

  5. Search for contact systems among EB-type binaries. IV - V375 Cas, UW Ori, DO Cas, RU ERI

    NASA Astrophysics Data System (ADS)

    Barone, F.; di Fiore, L.; Milano, L.; Pirozzi, L.; Russo, G.

    1992-12-01

    We present the analysis of the data of four EB-type eclipsing binaries, continuing our search for contact or almost contact systems. The Price algorithm has been used in conjunction to the Wilson-Devinney model to try to obtain, where possible, unambiguous solutions for all the systems.

  6. Allier théorie et pratique dans la lutte contre la pandémie du Sida

    PubMed Central

    Zerbo, Roger

    2014-01-01

    Le premier cas d'infection par le VIH a été notifié en 1986 au Burkina Faso. L'ignorance qui entourait cette infection et l'absence de traitement curatif a amplifié ses conséquences sociales et économiques. La mise en œuvre des interventions communautaire est un enjeu majeur actuel qui recommande la compréhension des logiques sociales endogènes qui influencent les comportements individuels et collectifs. C'est en cela que l'implication des sciences sociales dans la lutte contre les maladies, en particulier le Sida constitue un enjeu, en termes de définition et d'identification de leur contribution. Dans notre propos, nous pouvons mettre en évidence trois niveaux de contribution des sciences sociales, notamment la sociologie, l'anthropologie, la psychologie et dans une certaine mesure le droit et l’économie, à la prévention du Sida et la prise en charge des personnes infectées par le VIH. Il faut noter que ces disciplines contribuent à la lutte contre le VIH d'une part, par des réflexions et des éléments d'analyses constructives, et d'autre part, l'aptitude des porteurs de ces disciplines est parfois sollicitée pour l'efficacité de la mise en œuvre des actions et l'organisation des systèmes de soins. PMID:25722761

  7. Replication of a chimeric origin containing elements from Epstein-Barr virus ori P and bovine papillomavirus minimal origin.

    PubMed

    Kivimäe, S; Allikas, A; Kurg, R; Ustav, M

    2001-05-01

    The bovine papillomavirus E2 protein is a multifunctional protein that activates viral transcription, co-operates in initiation of viral DNA replication, and is required for long-term episomal maintenance of viral genomes. The EBNA1 protein of Epstein-Barr virus is required for synthesis and maintenance of Epstein-Barr virus genomes. Both viral proteins act through direct interactions with their respective DNA sequences in their origins of replication. The chimeric protein E2:EBNA1, which consists of an transactivation domain of E2 and DNA binding domain of EBNA1 supported the replication of the chimeric origin that contained EBNA1 binding sites in place of the E2 binding sites principally as full-length E2 did in the case of papillomavirus minimal origin. This indicates that the chimeric protein E2:EBNA1 is competent to assemble a replication complex similar to the E2 protein. These data confirm the earlier observations that the only part of E2 specifically required for its activity in replication is the N-terminal activation domain and the function of the DNA binding domain of E2 in the initiation of replication is to tether the transactivation domain of E2 to the origin of replication. PMID:11311423

  8. Mapping paddy rice planting area in wheat-rice double-cropped areas through integration of Landsat-8 OLI, MODIS, and PALSAR images

    NASA Astrophysics Data System (ADS)

    Wang, Jie; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Zhou, Yuting; Zhang, Yao

    2015-05-01

    As farmland systems vary over space and time (season and year), accurate and updated maps of paddy rice are needed for studies of food security and environmental problems. We selected a wheat-rice double-cropped area from fragmented landscapes along the rural-urban complex (Jiangsu Province, China) and explored the potential utility of integrating time series optical images (Landsat-8, MODIS) and radar images (PALSAR) in mapping paddy rice planting areas. We first identified several main types of non-cropland land cover and then identified paddy rice fields by selecting pixels that were inundated only during paddy rice flooding periods. These key temporal windows were determined based on MODIS Land Surface Temperature and vegetation indices. The resultant paddy rice map was evaluated using regions of interest (ROIs) drawn from multiple high-resolution images, Google Earth, and in-situ cropland photos. The estimated overall accuracy and Kappa coefficient were 89.8% and 0.79, respectively. In comparison with the National Land Cover Data (China) from 2010, the resultant map better detected changes in the paddy rice fields and revealed more details about their distribution. These results demonstrate the efficacy of using images from multiple sources to generate paddy rice maps for two-crop rotation systems.

  9. A note on the temporary misregistration of Landsat-8 Operational Land Imager (OLI) and Sentinel-2 Multi Spectral Instrument (MSI) imagery

    USGS Publications Warehouse

    Storey, James C.; Roy, David P.; Masek, Jeffrey; Gascon, Ferran; Dwyer, John L.; Choate, Michael J.

    2016-01-01

    The Landsat-8 and Sentinel-2 sensors provide multi-spectral image data with similar spectral and spatial characteristics that together provide improved temporal coverage globally. Both systems are designed to register Level 1 products to a reference image framework, however, the Landsat-8 framework, based upon the Global Land Survey images, contains residual geolocation errors leading to an expected sensor-to-sensor misregistration of 38 m (2σ). These misalignments vary geographically but should be stable for a given area. The Landsat framework will be readjusted for consistency with the Sentinel-2 Global Reference Image, with completion expected in 2018. In the interim, users can measure Landsat-to-Sentinel tie points to quantify the misalignment in their area of interest and if appropriate to reproject the data to better alignment.

  10. Mapping paddy rice planting area in wheat-rice double-cropped areas through integration of Landsat-8 OLI, MODIS, and PALSAR images.

    PubMed

    Wang, Jie; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Zhou, Yuting; Zhang, Yao

    2015-01-01

    As farmland systems vary over space and time (season and year), accurate and updated maps of paddy rice are needed for studies of food security and environmental problems. We selected a wheat-rice double-cropped area from fragmented landscapes along the rural-urban complex (Jiangsu Province, China) and explored the potential utility of integrating time series optical images (Landsat-8, MODIS) and radar images (PALSAR) in mapping paddy rice planting areas. We first identified several main types of non-cropland land cover and then identified paddy rice fields by selecting pixels that were inundated only during paddy rice flooding periods. These key temporal windows were determined based on MODIS Land Surface Temperature and vegetation indices. The resultant paddy rice map was evaluated using regions of interest (ROIs) drawn from multiple high-resolution images, Google Earth, and in-situ cropland photos. The estimated overall accuracy and Kappa coefficient were 89.8% and 0.79, respectively. In comparison with the National Land Cover Data (China) from 2010, the resultant map better detected changes in the paddy rice fields and revealed more details about their distribution. These results demonstrate the efficacy of using images from multiple sources to generate paddy rice maps for two-crop rotation systems. PMID:25965027

  11. Mapping paddy rice planting area in wheat-rice double-cropped areas through integration of Landsat-8 OLI, MODIS, and PALSAR images

    PubMed Central

    Wang, Jie; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Zhou, Yuting; Zhang, Yao

    2015-01-01

    As farmland systems vary over space and time (season and year), accurate and updated maps of paddy rice are needed for studies of food security and environmental problems. We selected a wheat-rice double-cropped area from fragmented landscapes along the rural–urban complex (Jiangsu Province, China) and explored the potential utility of integrating time series optical images (Landsat-8, MODIS) and radar images (PALSAR) in mapping paddy rice planting areas. We first identified several main types of non-cropland land cover and then identified paddy rice fields by selecting pixels that were inundated only during paddy rice flooding periods. These key temporal windows were determined based on MODIS Land Surface Temperature and vegetation indices. The resultant paddy rice map was evaluated using regions of interest (ROIs) drawn from multiple high-resolution images, Google Earth, and in-situ cropland photos. The estimated overall accuracy and Kappa coefficient were 89.8% and 0.79, respectively. In comparison with the National Land Cover Data (China) from 2010, the resultant map better detected changes in the paddy rice fields and revealed more details about their distribution. These results demonstrate the efficacy of using images from multiple sources to generate paddy rice maps for two-crop rotation systems. PMID:25965027

  12. Numerical simulation of dynamics of brushless dc motors for aerospace and other applications. Volume 2: User's guide to computer EMA model

    NASA Technical Reports Server (NTRS)

    Demerdash, N. A. O.; Nehl, T. W.

    1979-01-01

    A description and user's guide of the computer program developed to simulate the dynamics of an electromechanical actuator for aerospace applications are presented. The effects of the stator phase currents on the permanent magnets of the rotor are examined. The voltage and current waveforms present in the power conditioner network during the motoring, regenerative braking, and plugging modes of operation are presented and discussed.

  13. The hunt for origins of DNA replication in multicellular eukaryotes

    PubMed Central

    Urban, John M.; Foulk, Michael S.; Casella, Cinzia

    2015-01-01

    Origins of DNA replication (ORIs) occur at defined regions in the genome. Although DNA sequence defines the position of ORIs in budding yeast, the factors for ORI specification remain elusive in metazoa. Several methods have been used recently to map ORIs in metazoan genomes with the hope that features for ORI specification might emerge. These methods are reviewed here with analysis of their advantages and shortcomings. The various factors that may influence ORI selection for initiation of DNA replication are discussed. PMID:25926981

  14. Numerical simulation of dynamics of brushless dc motors for aerospace and other applications. Volume 1: Model development and applications, part A

    NASA Technical Reports Server (NTRS)

    Demerdash, N. A. O.; Nehl, T. W.

    1979-01-01

    The development, fabrication and evaluation of a prototype electromechanical actuator (EMA) is discussed. Application of the EMA as a motor for control surfaces in aerospace flight is examined. A mathematical model of the EMA is developed for design optimization. Nonlinearities which complicate the mathematical model are discussed. The dynamics of the EMA from the underlying physical principles are determined and a discussion of similating the control logic by means of equivalent boolean expressions is presented.

  15. Electromechanical flight control actuator

    NASA Technical Reports Server (NTRS)

    1979-01-01

    The feasibility of using an electromechanical actuator (EMA) as the primary flight control equipment in aerospace flight is examined. The EMA motor design is presented utilizing improved permanent magnet materials. The necessary equipment to complete a single channel EMA using the single channel power electronics breadboard is reported. The design and development of an improved rotor position sensor/tachometer is investigated.

  16. Régimes permanents bidimensionnels d'infiltration dans un sol cultivé et microirrigué, II. Comparaison de la théorie avec des mesures in-situ

    NASA Astrophysics Data System (ADS)

    Boulier, J. F.; Vauclin, M.

    1987-10-01

    An experimental plot of 2500 m 2 in area has been cultivated and irrigated by line sources (trickle irrigation), in order to compare the theory presented in the first part of the paper with measurements during two years (sorghum, maize). In addition a stochastic-conceptual model taking into account the spatial variability of the soil hydraulic characteristics described by means of a scaling factor (according to porous media's similitude theory) is developed. Field-averages and variances of variables associated with the flow are calculated according to this model and compared with actual ones measured all over the field-plot. Fourteen sites equipped for measuring water content (neutron access tubes) and water pressure (tensiometers) are chosen in such a way that they represent the statistical distribution of a single parameter showing the textural variation in this loamy soil. The experimental results show that the steady-state approach is reasonable for water content on a weekly basis but is questionable for water pressure. Agreement between the deterministic model with a fitted water extraction model and the measurements at two sites is correct in the irrigated row and their differences, particularly in the driest parts of the soil, are discussed. The stochastic approach gives averaged water-content values close to the experimental ones but underestimates the variances, especially for sorghum. Although for this particular field plot deterministic modelling cannot be rejected as far as water content is concerned, the estimation of the mean behavior through tensiometric measurements seems rather risky.

  17. Métallurgie fondamentale et métallurgie numérique : l'héritage de Jacques Friedel dans la théorie de la plasticité des métaux et alliages

    NASA Astrophysics Data System (ADS)

    Bréchet, Yves

    2016-03-01

    Jacques Friedel's contribution to the theory of plasticity is described, as well as the more recent developments it inspired. It involves the microscopic properties of dislocations as well as macroscopic effects. The evolution of fundamental metallurgy toward numerical metallurgy is discussed, and Friedel's point of view on numerical methods is analyzed.

  18. The Olympic Regeneration in East London (ORiEL) study: protocol for a prospective controlled quasi-experiment to evaluate the impact of urban regeneration on young people and their families

    PubMed Central

    Smith, Neil R; Clark, Charlotte; Fahy, Amanda E; Tharmaratnam, Vanathi; Lewis, Daniel J; Thompson, Claire; Renton, Adrian; Moore, Derek G; Bhui, Kamaldeep S; Taylor, Stephanie J C; Eldridge, Sandra; Petticrew, Mark; Greenhalgh, Tricia; Stansfeld, Stephen A; Cummins, Steven

    2012-01-01

    Introduction Recent systematic reviews suggest that there is a dearth of evidence on the effectiveness of large-scale urban regeneration programmes in improving health and well-being and alleviating health inequalities. The development of the Olympic Park in Stratford for the London 2012 Olympic and Paralympic Games provides the opportunity to take advantage of a natural experiment to examine the impact of large-scale urban regeneration on the health and well-being of young people and their families. Design and methods A prospective school-based survey of adolescents (11–12 years) with parent data collected through face-to-face interviews at home. Adolescents will be recruited from six randomly selected schools in an area receiving large-scale urban regeneration (London Borough of Newham) and compared with adolescents in 18 schools in three comparison areas with no equivalent regeneration (London Boroughs of Tower Hamlets, Hackney and Barking & Dagenham). Baseline data will be completed prior to the start of the London Olympics (July 2012) with follow-up at 6 and 18 months postintervention. Primary outcomes are: pre–post change in adolescent and parent mental health and well-being, physical activity and parental employment status. Secondary outcomes include: pre–post change in social cohesion, smoking, alcohol use, diet and body mass index. The study will account for individual and environmental contextual effects in evaluating changes to identified outcomes. A nested longitudinal qualitative study will explore families’ experiences of regeneration in order to unpack the process by which regeneration impacts on health and well-being. Ethics and dissemination The study has approval from Queen Mary University of London Ethics Committee (QMREC2011/40), the Association of Directors of Children's Services (RGE110927) and the London Boroughs Research Governance Framework (CERGF113). Fieldworkers have had advanced Criminal Records Bureau clearance. Findings will be disseminated through peer-reviewed publications, national and international conferences, through participating schools and the study website (http://www.orielproject.co.uk). PMID:22936822

  19. 42 CFR 93.511 - Prehearing conferences.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative..., specification of disputes of fact and their materiality to the ORI findings of research misconduct and any...

  20. 42 CFR 93.511 - Prehearing conferences.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative..., specification of disputes of fact and their materiality to the ORI findings of research misconduct and any...

  1. 42 CFR 93.511 - Prehearing conferences.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative..., specification of disputes of fact and their materiality to the ORI findings of research misconduct and any...

  2. 42 CFR 93.511 - Prehearing conferences.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative..., specification of disputes of fact and their materiality to the ORI findings of research misconduct and any...

  3. 77 FR 40059 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-06

    ...Notice is hereby given that the Office of Research Integrity (ORI) has taken final action in the following case: Sinae Kim, Ph.D., Emory University: Based on the report of an investigation conducted by Emory University (EU) and additional analysis conducted by ORI in its oversight review, ORI found that Dr. Sinae Kim, former Postdoctoral Fellow, Department of Medicine, EU, engaged in research......

  4. 78 FR 25274 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-30

    ...Notice is hereby given that the Office of Research Integrity (ORI) has taken final action in the following case: Matthew Poore, Advanced Liquid Logic Inc.: Based on the report of an inquiry conducted by Advanced Liquid Logic Inc. (Liquid Logic), the Respondent's admission, and additional analysis conducted by ORI, ORI found that Mr. Matthew Poore, former Technician, Liquid Logic, engaged in......

  5. 77 FR 125 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-03

    ... HUMAN SERVICES Office of the Secretary Findings of Research Misconduct AGENCY: Office of the Secretary, HHS. ACTION: Notice. SUMMARY: Notice is hereby given that the Office of Research Integrity (ORI) has... conducted by ORI in its oversight review, ORI found that Dr. Mahesh Visvanathan, Research...

  6. 77 FR 5254 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-02

    ...Notice is hereby given that the Office of Research Integrity (ORI) has taken final action in the following case: Calleen S. Zach, Creighton University: Based on evidence obtained from Creighton University (CU) and additional evidence gathered by the Office of Research Integrity (ORI) during its oversight review, ORI found that Ms. Calleen S. Zach, former Research Assistant and Data Base......

  7. 76 FR 63621 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-13

    ...Notice is hereby given that the Office of Research Integrity (ORI) has taken final action in the following case: Nicola Solomon, Ph.D., University of Michigan Medical School: Based on an investigation conducted by the University of Michigan Medical School (UMMS) and a preliminary analysis conducted by ORI, ORI found that Dr. Nicola Solomon, former postdoctoral scholar, Department of Human......

  8. 76 FR 47589 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-05

    ... HUMAN SERVICES Office of the Secretary Findings of Research Misconduct AGENCY: Office of the Secretary, HHS. ACTION: Notice. SUMMARY: Notice is hereby given that the Office of Research Integrity (ORI) has... Research Center: Based on the Respondent's acceptance of ORI's research misconduct findings, ORI found...

  9. Feasibility and validity of ecological momentary assessment in adolescents with high-functioning autism and Asperger's disorder.

    PubMed

    Khor, Angela S; Gray, Kylie M; Reid, Sophie C; Melvin, Glenn A

    2014-01-01

    Ecological Momentary Assessment (EMA) may increase accuracy of data compared with retrospective questionnaires by assessing behaviours as they occur, hence decreasing recall biases and increasing ecological validity. This study examined the feasibility and concurrent validity of an EMA tool for adolescents with High-Functioning Autism Spectrum Disorders (HFASD). Thirty-one adolescents with HFASD completed a mobile phone EMA application that assessed stressors and coping for two weeks. Parents and adolescents also completed retrospective measures of the adolescent's coping/stressors. Moderate compliance with the EMA tool was achieved and some concurrent validity was established with the retrospective measure of coping. Concordance was found between the types of stressors reported by parents and adolescents but not the quantity. The results suggest adolescents with HFASD are capable of reporting on their stressors and coping via EMA. EMA has the potential to be a valuable research tool in this population. PMID:24331303

  10. Biocatalytic Conversion of Avermectin to 4"-Oxo-Avermectin: Characterization of Biocatalytically Active Bacterial Strains and of Cytochrome P450 Monooxygenase Enzymes and Their Genes

    PubMed Central

    Jungmann, Volker; Molnár, István; Hammer, Philip E.; Hill, D. Steven; Zirkle, Ross; Buckel, Thomas G.; Buckel, Dagmar; Ligon, James M.; Pachlatko, J. Paul

    2005-01-01

    4"-Oxo-avermectin is a key intermediate in the manufacture of the agriculturally important insecticide emamectin benzoate from the natural product avermectin. Seventeen biocatalytically active Streptomyces strains with the ability to oxidize avermectin to 4"-oxo-avermectin in a regioselective manner have been discovered in a screen of 3,334 microorganisms. The enzymes responsible for this oxidation reaction in these biocatalytically active strains were found to be cytochrome P450 monooxygenases (CYPs) and were termed Ema1 to Ema17. The genes for Ema1 to Ema17 have been cloned, sequenced, and compared to reveal a new subfamily of CYPs. Ema1 to Ema16 have been overexpressed in Escherichia coli and purified as His-tagged recombinant proteins, and their basic enzyme kinetic parameters have been determined. PMID:16269732

  11. Associations between Retrospective versus Ecological Momentary Assessment Measures of Emotion and Eating Disorder Symptoms in Anorexia Nervosa

    PubMed Central

    Lavender, Jason M.; De Young, Kyle P.; Anestis, Michael D.; Wonderlich, Stephen A.; Crosby, Ross D.; Engel, Scott G.; Mitchell, James E.; Crow, Scott J.; Peterson, Carol B.; Le Grange, Daniel

    2013-01-01

    This study examined the unique associations between eating disorder symptoms and two emotion-related constructs (affective lability and anxiousness) assessed via distinct methodologies in anorexia nervosa (AN). Women (N=116) with full or subthreshold AN completed baseline emotion and eating disorder assessments, followed by two weeks of ecological momentary assessment (EMA). Hierarchical regressions were used to examine unique contributions of baseline and EMA measures of affective lability and anxiousness in accounting for variance in baseline eating disorder symptoms and EMA dietary restriction, controlling for age, body mass index, depression, and AN diagnostic subtype. Only EMA affective lability was uniquely associated with baseline eating disorder symptoms and EMA dietary restriction. Anxiousness was uniquely associated with baseline eating disorder symptoms regardless of assessment method; neither of the anxiousness measures was uniquely associated with EMA dietary restriction. Affective lability and anxiousness account for variance in global eating disorder symptomatology; AN treatments targeting these emotion-related constructs may prove useful. PMID:23880601

  12. Detection of Legionella species in environmental water by the quantitative PCR method in combination with ethidium monoazide treatment.

    PubMed

    Inoue, Hiroaki; Takama, Tomoko; Yoshizaki, Miwa; Agata, Kunio

    2015-01-01

    We detected Legionella species in 111 bath water samples and 95 cooling tower water samples by using a combination of conventional plate culture, quantitative polymerase chain reaction (qPCR) and qPCR combined with ethidium monoazide treatment (EMA-qPCR) methods. In the case of bath water samples, Legionella spp. were detected in 30 samples by plate culture, in 85 samples by qPCR, and in 49 samples by EMA-qPCR. Of 81 samples determined to be Legionella-negative by plate culture, 56 and 23 samples were positive by qPCR and EMA-qPCR, respectively. Therefore, EMA treatment decreased the number of Legionella-positive bath water samples detected by qPCR. In contrast, EMA treatment had no effect on cooling tower water samples. We therefore expect that EMA-qPCR is a useful method for the rapid detection of viable Legionella spp. from bath water samples. PMID:25817816

  13. Primary health care vs. emergency medical assistance: a conceptual framework.

    PubMed

    Van Damme, W I M; Van Lerberghe, W I M; Boelaert, Marleen

    2002-03-01

    Primary health care (PHC) and emergency medical assistance (EMA) are discussed as two fundamentally different strategies of delivering health care. PHC is conceptualized as part of overall development, while EMA is delivered in disaster or emergency situations. The article contrasts the underlying paradigms, and the characteristics of care in PHC and EMA. It then analyzes the characteristics of PHC and EMA health services, their structure, management and support systems. In strategic aspects, it contrasts how managerial and financial sustainability are fundamentally different, and how the term accountability is used differently in development and disaster situations. However, while PHC and EMA, development and disaster, are clear opposite poles, many field situations in the developing world are today somewhere in-between. In such non-development, non-emergency situations, the objectives and approach will have to vary and an adapted strategy combining characteristics from PHC and EMA will have to be developed. PMID:11861586

  14. Anti-endomysial antibody of IgG1 isotype detection strongly increases the prevalence of coeliac disease in patients affected by type I diabetes mellitus

    PubMed Central

    Picarelli, A; Sabbatella, L; Di Tola, M; Vetrano, S; Casale, C; Anania, MC; Porowska, B; Vergari, M; Schiaffini, R; Gargiulo, P

    2005-01-01

    A strong association between type 1 insulin-dependent diabetes mellitus (IDDM1) and coeliac disease (CD) is well documented, but it is known that prevalence values are underestimated. Serum anti-endomysial antibodies (EMA), considered diagnostic for CD because of their high sensitivity and specificity, belong to the IgA class, but the existence of EMA of IgG1 isotype in the presence or absence of IgA deficiency was reported. In order to re-evaluate the occurrence of CD in IDDM1 patients we performed a screening in IDDM1 patients using EMA of both isotypes. Ninety-four adults affected by IDDM1 (unaffected by CD before enrolling) were enrolled and 83 blood donors as controls. All subjects were on a gluten-containing diet. Histology and biopsy culture were performed. EMA IgA and IgG1 in sera and culture supernatants were detected. Serum EMA were positive in 13 of 94 IDDM1 patients (13·8%). Six of 13 presented IgA-EMA, seven of 13 presented IgG1-EMA. No EMA were found in the control population. Total intestinal atrophy was found in all six patients with serum IgA-EMA and in five of seven with serum IgG1-EMA. Diagnosis of CD was confirmed by histology and organ culture in all 13 patients with serum EMA. The prevalence of CD in the patients affected by IDDM1 was 6·4% for IgA-EMA-positive and 7·4% for IgG1-EMA-positive patients. We confirmed the prevalence of CD in the IDDM1 population obtained with IgA-EMA screening only (6·4%). This prevalence value increases dramatically to 13·8% when IgG1-EMA are also used in the screening. We conclude that IgG1-EMA should also be sought whenever an IDDM1 patient undergoes screening for CD. PMID:16178863

  15. Symposium on Electromagnetic Launcher Technology, 5th, Sandestin, FL, Apr. 3-5, 1990, Proceedings

    NASA Astrophysics Data System (ADS)

    Gooden, Clarence E.

    1991-01-01

    The present conference on electromagnetic accelerators (EMAs) and railguns (RGs) discusses active-current management for four-rail RGs, the design of a compulsator-drive 60-caliber RG, EMA studies with augmented rails, muzzle-shunt augmentation of conventional RGs, effect of in-bore gas on RG performance, the distributed-energy store RG, plasma diagnostics for high power ignitron development, a review of EMA armature research, RG hybrid armatures, a new solid-armature design concept, and the electrodynamics of RG plasma armatures. Also discussed is RG modeling at speed using three-dimensional finite elements, power supply technology for EMAs, rotating machine power supplies for next-generation EMAs, advanced EMA power supplies with magnetic-flux compression, metal-to-metal switches for large currents, lightweight high-effiency energy-storage transformers, hypervelocity projectile development for EMAs, structural design issues for EMA projectiles, stiff RGs, a reinforced Al conductor for cryogenic applications, mass-stabilized projectile designs for EMA launch, indictively-commutated coilguns, an actively switched pulsed induction accelerator, a plasma gun-augmented electrothermal accelerator, a symmetrical rail accelerator, and a travelling-wave synchronous coil gun.

  16. Subclinical Cardiac Dysfunction in Children with Coeliac Disease: Is the Gluten-Free Diet Effective?

    PubMed Central

    Saylan, Berna; Cevik, Ayhan; Kirsaclioglu, Ceyda Tuna; Ekici, Filiz; Tosun, Ozgur; Ustundag, Gonca

    2012-01-01

    Objectives. The aim of this study is to investigate the effects of coeliac disease on cardiac function in children using conventional transthoracic echocardiography (TTE) and tissue Doppler echocardiography (TDE). Methods. Coeliac disease patients were evaluated in two different groups based on serum endomysial antibody (EmA) titers (EmA (+) and EmA (−)), and the data obtained by conventional and TDE studies were compared between the patient groups and healthy controls. Results. There was no significant difference between EmA (+) and EmA (−) groups in terms of the conventional TTE parameters, including ejection fraction (EF), fractional shortening (FS), and left ventricle end diastolic diameter (LVEDD), that show the left ventricular systolic function (P = 0.727, P = 0.317, P = 0.118). TDE showed a significant difference in left ventricle (LV) isovolumic relaxation time (LV IVRT) and LV myocardial performance index (LV MPI) parameters between EmA (+) and EmA (−) patient groups (P < 0.0001). Conclusion. The measurement of LV MPI and LV IVRT parameters by TDE would be beneficial in early determination of the cardiac involvement and establishing appropriate treatment and followup of patients with coeliac disease as well as in making distinction between EmA (+) and EmA (−) patients. PMID:23209919

  17. Redefining bacterial origins of replication as centralized information processors

    PubMed Central

    Marczynski, Gregory T.; Rolain, Thomas; Taylor, James A.

    2015-01-01

    In this review we stress the differences between eukaryotes and bacteria with respect to their different cell cycles, replication mechanisms and genome organizations. One of the most basic and underappreciated differences is that a bacterial chromosome uses only one ori while eukaryotic chromosome uses multiple oris. Consequently, eukaryotic oris work redundantly in a cell cycle divided into separate phases: First inactive replication proteins assemble on eukaryotic oris, and then they await conditions (in the separate “S-phase”) that activate only the ori-bound and pre-assembled replication proteins. S-phase activation (without re-assembly) ensures that a eukaryotic ori “fires” (starts replication) only once and that each chromosome consistently duplicates only once per cell cycle. This precise chromosome duplication does not require precise multiple ori firing in S-phase. A eukaryotic ori can fire early, late or not at all. The single bacterial ori has no such margin for error and a comparable imprecision is lethal. Single ori usage is not more primitive; it is a totally different strategy that distinguishes bacteria. We further argue that strong evolutionary pressures created more sophisticated single ori systems because bacteria experience extreme and rapidly changing conditions. A bacterial ori must rapidly receive and process much information in “real-time” and not just in “cell cycle time.” This redefinition of bacterial oris as centralized information processors makes at least two important predictions: First that bacterial oris use many and yet to be discovered control mechanisms and second that evolutionarily distinct bacteria will use many very distinct control mechanisms. We review recent literature that supports both predictions. We will highlight three key examples and describe how negative-feedback, phospho-relay, and chromosome-partitioning systems act to regulate chromosome replication. We also suggest future studies and discuss

  18. Redefining bacterial origins of replication as centralized information processors.

    PubMed

    Marczynski, Gregory T; Rolain, Thomas; Taylor, James A

    2015-01-01

    In this review we stress the differences between eukaryotes and bacteria with respect to their different cell cycles, replication mechanisms and genome organizations. One of the most basic and underappreciated differences is that a bacterial chromosome uses only one ori while eukaryotic chromosome uses multiple oris. Consequently, eukaryotic oris work redundantly in a cell cycle divided into separate phases: First inactive replication proteins assemble on eukaryotic oris, and then they await conditions (in the separate "S-phase") that activate only the ori-bound and pre-assembled replication proteins. S-phase activation (without re-assembly) ensures that a eukaryotic ori "fires" (starts replication) only once and that each chromosome consistently duplicates only once per cell cycle. This precise chromosome duplication does not require precise multiple ori firing in S-phase. A eukaryotic ori can fire early, late or not at all. The single bacterial ori has no such margin for error and a comparable imprecision is lethal. Single ori usage is not more primitive; it is a totally different strategy that distinguishes bacteria. We further argue that strong evolutionary pressures created more sophisticated single ori systems because bacteria experience extreme and rapidly changing conditions. A bacterial ori must rapidly receive and process much information in "real-time" and not just in "cell cycle time." This redefinition of bacterial oris as centralized information processors makes at least two important predictions: First that bacterial oris use many and yet to be discovered control mechanisms and second that evolutionarily distinct bacteria will use many very distinct control mechanisms. We review recent literature that supports both predictions. We will highlight three key examples and describe how negative-feedback, phospho-relay, and chromosome-partitioning systems act to regulate chromosome replication. We also suggest future studies and discuss using replication

  19. Oridonin upregulates PTEN through activating p38 MAPK and inhibits proliferation in human colon cancer cells.

    PubMed

    Wu, Qiu-Xiang; Yuan, Shuang-Xue; Ren, Chun-Mei; Yu, Yu; Sun, Wen-Juan; He, Bai-Cheng; Wu, Ke

    2016-06-01

    Oridonin (ORI) has been reported as an antiproliferation and apoptosis-inducing natural product in various cancer cells. However, the exact molecular mechanism underlying these effects remains unclear. In the present study, we demonstrated the antiproliferation effect of ORI in HCT116 cells, and analyzed the possible molecular mechanism which mediates this effect. We found that ORI inhibits proliferation, induces cell cycle arrest and apoptosis in HCT116 cells, thus also tumor growth. Mechanically, we found that ORI has no substantial effect on mRNA expression of phosphatase and tensin homologue (PTEN), but increases the total protein level of PTEN and markedly reduces the phosphorylation of PTEN; Exogenous expression of PTEN potentiates the anticancer effect of ORI, while knockdown of PTEN attenuates it. ORI also increases the phosphorylation of p38 MAPK, and p38 MAPK-specific inhibitor reduces the antiproliferation effect ORI in HCT116 cells. Moreover, inhibition of p38 MAPK increases the phosphorylation of PTEN, and reverses ORI-induced decrease of PTEN phosphorylation. Our findings suggested that ORI may be a potential anticancer drug for colon cancer, this effect may be mediated by enhancing the function of PTEN through reducing its phosphorylation, which may be resulted from the ORI-induced activation of p38 MAPK. PMID:27108927

  20. Oridonin inhibits gefitinib-resistant lung cancer cells by suppressing EGFR/ERK/MMP-12 and CIP2A/Akt signaling pathways.

    PubMed

    Xiao, Xiangling; He, Zhongwei; Cao, Wei; Cai, Fen; Zhang, Liang; Huang, Qiuyue; Fan, Chunsheng; Duan, Chao; Wang, Xiaobo; Wang, Jiu; Liu, Ying

    2016-06-01

    Oridonin (Ori), a diterpenoid compound extracted from traditional medicinal herbs, elicits antitumor effects on many cancer types. However, whether Ori can be used in gefitinib-resistant non-small cell lung cancer (NSCLC) cells remains unclear. This study investigated the antitumor activity and underlying mechanisms of Ori. Results demonstrated that this compound dose-dependently inhibited the proliferation, invasion, and migration of the gefitinib-resistant NSCLC cells in vitro. Ori also significantly downregulated the phosphorylation of EGFR, ERK, Akt, expression levels of matrix metalloproteinase-12 (MMP-12), and the cancerous inhibitor of protein phosphatase 2A (CIP2A). In addition, Ori upregulated protein phosphatase 2A (PP2A) activity of gefitinib-resistant NSCLC cells. Ori combined with docetaxel synergistically inhibited these cells. Ori also inhibited tumor growth in murine models. Immunohistochemistry results further revealed that Ori downregulated phospho-EGFR, MMP-12, and CIP2A in vivo. These findings indicated that Ori can inhibit the proliferation, invasion, and migration of gefitinib-resistant NSCLC cells by suppressing EGFR/ERK/MMP-12 and CIP2A/PP2A/Akt signaling pathways. Thus, Ori may be a novel effective candidate to treat gefitinib-resistant NSCLC. PMID:27082429

  1. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

    PubMed Central

    Cayrou, Christelle; Coulombe, Philippe; Vigneron, Alice; Stanojcic, Slavica; Ganier, Olivier; Peiffer, Isabelle; Rivals, Eric; Puy, Aurore; Laurent-Chabalier, Sabine; Desprat, Romain; Méchali, Marcel

    2011-01-01

    In metazoans, thousands of DNA replication origins (Oris) are activated at each cell cycle. Their genomic organization and their genetic nature remain elusive. Here, we characterized Oris by nascent strand (NS) purification and a genome-wide analysis in Drosophila and mouse cells. We show that in both species most CpG islands (CGI) contain Oris, although methylation is nearly absent in Drosophila, indicating that this epigenetic mark is not crucial for defining the activated origin. Initiation of DNA synthesis starts at the borders of CGI, resulting in a striking bimodal distribution of NS, suggestive of a dual initiation event. Oris contain a unique nucleotide skew around NS peaks, characterized by G/T and C/A overrepresentation at the 5′ and 3′ of Ori sites, respectively. Repeated GC-rich elements were detected, which are good predictors of Oris, suggesting that common sequence features are part of metazoan Oris. In the heterochromatic chromosome 4 of Drosophila, Oris correlated with HP1 binding sites. At the chromosome level, regions rich in Oris are early replicating, whereas Ori-poor regions are late replicating. The genome-wide analysis was coupled with a DNA combing analysis to unravel the organization of Oris. The results indicate that Oris are in a large excess, but their activation does not occur at random. They are organized in groups of site-specific but flexible origins that define replicons, where a single origin is activated in each replicon. This organization provides both site specificity and Ori firing flexibility in each replicon, allowing possible adaptation to environmental cues and cell fates. PMID:21750104

  2. Conceptualizing and Estimating Process Speed in Studies Employing Ecological Momentary Assessment Designs: A Multilevel Variance Decomposition Approach

    ERIC Educational Resources Information Center

    Shiyko, Mariya P.; Ram, Nilam

    2011-01-01

    Researchers have been making use of ecological momentary assessment (EMA) and other study designs that sample feelings and behaviors in real time and in naturalistic settings to study temporal dynamics and contextual factors of a wide variety of psychological, physiological, and behavioral processes. As EMA designs become more widespread,…

  3. Brain and Muscle Redox Imbalance Elicited by Acute Ethylmalonic Acid Administration

    PubMed Central

    Schuck, Patrícia Fernanda; Milanez, Ana Paula; Felisberto, Francine; Galant, Leticia Selinger; Machado, Jéssica Luca; Furlanetto, Camila Brulezi; Petronilho, Fabricia; Dal-Pizzol, Felipe; Streck, Emilio Luiz; Ferreira, Gustavo Costa

    2015-01-01

    Ethylmalonic acid (EMA) accumulates in tissues and biological fluids of patients affected by short-chain acyl-CoA dehydrogenase deficiency (SCADD) and ethylmalonic encephalopathy, illnesses characterized by neurological and muscular symptoms. Considering that the mechanisms responsible for the brain and skeletal muscle damage in these diseases are poorly known, in the present work we investigated the effects of acute EMA administration on redox status parameters in cerebral cortex and skeletal muscle from 30-day-old rats. Animals received three subcutaneous injections of EMA (6 μmol/g; 90 min interval between injections) and were killed 1 h after the last administration. Control animals received saline in the same volumes. EMA administration significantly increased thiobarbituric acid-reactive substances levels in cerebral cortex and skeletal muscle, indicating increased lipid peroxidation. In addition, carbonyl content was increased in EMA-treated animal skeletal muscle when compared to the saline group. EMA administration also significantly increased 2’,7’-dihydrodichlorofluorescein oxidation and superoxide production (reactive species markers), and decreased glutathione peroxidase activity in cerebral cortex, while glutathione levels were decreased only in skeletal muscle. On the other hand, respiratory chain complex I-III activity was altered by acute EMA administration neither in cerebral cortex nor in skeletal muscle. The present results show that acute EMA administration elicits oxidative stress in rat brain and skeletal muscle, suggesting that oxidative damage may be involved in the pathophysiology of the brain and muscle symptoms found in patients affected by SCADD and ethylmalonic encephalopathy. PMID:26010931

  4. Brain and muscle redox imbalance elicited by acute ethylmalonic acid administration.

    PubMed

    Schuck, Patrícia Fernanda; Milanez, Ana Paula; Felisberto, Francine; Galant, Leticia Selinger; Machado, Jéssica Luca; Furlanetto, Camila Brulezi; Petronilho, Fabricia; Dal-Pizzol, Felipe; Streck, Emilio Luiz; Ferreira, Gustavo Costa

    2015-01-01

    Ethylmalonic acid (EMA) accumulates in tissues and biological fluids of patients affected by short-chain acyl-CoA dehydrogenase deficiency (SCADD) and ethylmalonic encephalopathy, illnesses characterized by neurological and muscular symptoms. Considering that the mechanisms responsible for the brain and skeletal muscle damage in these diseases are poorly known, in the present work we investigated the effects of acute EMA administration on redox status parameters in cerebral cortex and skeletal muscle from 30-day-old rats. Animals received three subcutaneous injections of EMA (6 μmol/g; 90 min interval between injections) and were killed 1 h after the last administration. Control animals received saline in the same volumes. EMA administration significantly increased thiobarbituric acid-reactive substances levels in cerebral cortex and skeletal muscle, indicating increased lipid peroxidation. In addition, carbonyl content was increased in EMA-treated animal skeletal muscle when compared to the saline group. EMA administration also significantly increased 2',7'-dihydrodichlorofluorescein oxidation and superoxide production (reactive species markers), and decreased glutathione peroxidase activity in cerebral cortex, while glutathione levels were decreased only in skeletal muscle. On the other hand, respiratory chain complex I-III activity was altered by acute EMA administration neither in cerebral cortex nor in skeletal muscle. The present results show that acute EMA administration elicits oxidative stress in rat brain and skeletal muscle, suggesting that oxidative damage may be involved in the pathophysiology of the brain and muscle symptoms found in patients affected by SCADD and ethylmalonic encephalopathy. PMID:26010931

  5. Ecological Momentary Assessment of Mood Disorders and Mood Dysregulation

    ERIC Educational Resources Information Center

    Ebner-Priemer, Ulrich W.; Trull, Timothy J.

    2009-01-01

    In this review, we discuss ecological momentary assessment (EMA) studies on mood disorders and mood dysregulation, illustrating 6 major benefits of the EMA approach to clinical assessment: (a) Real-time assessments increase accuracy and minimize retrospective bias; (b) repeated assessments can reveal dynamic processes; (c) multimodal assessments…

  6. Influences of Electromagnetic Articulography Sensors on Speech Produced by Healthy Adults and Individuals with Aphasia and Apraxia

    ERIC Educational Resources Information Center

    Katz, William F.; Bharadwaj, Sneha V.; Stettler, Monica P.

    2006-01-01

    Purpose: This study examined whether the intraoral transducers used in electromagnetic articulography (EMA) interfere with speech and whether there is an added risk of interference when EMA systems are used to study individuals with aphasia and apraxia. Method: Ten adult talkers (5 individuals with aphasia/apraxia, 5 controls) produced 12 American…

  7. Trait anxiety and trait anger measured by ecological momentary assessment and their correspondence with traditional trait questionnaires

    PubMed Central

    Edmondson, Donald; Shaffer, Jonathan A.; Chaplin, William F.; Burg, Matthew M.; Stone, Arthur A.; Schwartz, Joseph E.

    2013-01-01

    Ecological momentary assessments (EMA) of anxiety and anger/hostility were obtained every 25–30 minutes over two 24-hour periods, separated by a median of 6 months, from 165 employees at a university in the Northeast. We used a multilevel trait-state-error structural equation model to estimate: (1) the proportion of variance in EMA anxiety and anger/hostility attributable to stable trait-like individual differences; (2) the correspondence between these trait-like components of EMA anxiety and anger/hostility and traditional questionnaire measures of each construct; and (3) the test-retest correlation between two 24-hour averages obtained several months apart. After adjustment for measurement error, more than half the total variance in EMA reports of anxiety and anger/hostility is attributable to stable trait-like individual differences; however, the trait-like component of each construct is only modestly correlated with questionnaire measures of that construct. The 6-month “test-retest” correlations of latent variables representing the true 24-hour EMA average anxiety and average anger are quite high (r ≥ 0.83). This study represents the longest follow-up period over which EMA-based estimates of traits have been examined. The results suggest that although the trait component (individual differences) of EMA momentary ratings of anxiety and anger is larger than the state component, traditional self-report questionnaires of trait anxiety and anger correspond only weakly with EMA-defined traits. PMID:24198441

  8. Safety of Electromagnetic Articulography in Patients with Pacemakers and Implantable Cardioverter-Defibrillators

    ERIC Educational Resources Information Center

    Joglar, Jose A.; Nguyen, Carol; Garst, Diane M.; Katz, William F.

    2009-01-01

    Purpose: "Electromagnetic articulography (EMA)" uses a helmet to create alternating magnetic fields for tracking speech articulator movement. An important safety consideration is whether EMA magnetic fields interfere with the operation of speakers' pacemakers or implantable cardioverter-defibrillators (ICDs). In this investigation, individuals…

  9. Kinematic Analysis of Lingual Movements during Consonant Productions in Dysarthric Speakers with Friedreich's Ataxia: A Case-by-Case Analysis

    ERIC Educational Resources Information Center

    Folker, Joanne E.; Murdoch, Bruce E.; Cahill, Louise M.; Delatycki, Martin B.; Corben, Louise A.; Vogel, Adam P.

    2011-01-01

    Articulatory kinematics were investigated using electromagnetic articulography (EMA) in four dysarthric speakers with Friedreich's ataxia (FRDA). Specifically, tongue-tip and tongue-back movements were recorded by the AG-200 EMA system during production of the consonants t and k as produced within a sentence utterance and during a rapid syllable…

  10. Ecological Momentary Assessment: A Research Method for Studying the Daily Lives of Teachers

    ERIC Educational Resources Information Center

    Carson, Russell L.; Weiss, Howard M.; Templin, Thomas J.

    2010-01-01

    The purpose of this paper is to introduce ecological momentary assessment (EMA) as an effective approach for capturing teachers' emotional states and behaviours over time. Although the implementation of EMA has a rich and successful history among social science researchers in general, traditional retrospective, self-report methods for collecting…

  11. Hereditary spherocytosis diagnosed with the eosin-5'-maleimide binding test.

    PubMed

    Watanabe, Toru; Ono, Hiroyuki; Tajima, Iwao; Ishigaki, Hidetoshi; Hakamata, Akio; Shirai, Masami; Endoh, Akira; Hongo, Teruaki

    2014-06-01

    We describe three cases of hereditary spherocytosis (HS) diagnosed using the eosin-5'-maleimide (EMA) binding test and discuss the relevance of the EMA binding test. In Japan, this test is not widely used because the prevalence of HS is low. This test is a valuable screening test for the diagnosis of HS. PMID:24894931

  12. An algorithm for computing moments-based flood quantile estimates when historical flood information is available

    USGS Publications Warehouse

    Cohn, T.A.; Lane, W.L.; Baier, W.G.

    1997-01-01

    This paper presents the expected moments algorithm (EMA), a simple and efficient method for incorporating historical and paleoflood information into flood frequency studies. EMA can utilize three types of at-site flood information: systematic stream gage record: information about the magnitude of historical floods; and knowledge of the number of years in the historical period when no large flood occurred. EMA employs an iterative procedure to compute method-of-moments parameter estimates. Initial parameter estimates are calculated from systematic stream gage data. These moments are then updated by including the measured historical peaks and the expected moments, given the previously estimated parameters of the below-threshold floods from the historical period. The updated moments result in new parameter estimates, and the last two steps are repeated until the algorithm converges. Monte Carlo simulations compare EMA, Bulletin 17B's [United States Water Resources Council, 1982] historically weighted moments adjustment, and maximum likelihood estimators when fitting the three parameters of the log-Pearson type III distribution. These simulations demonstrate that EMA is more efficient than the Bulletin 17B method, and that it is nearly as efficient as maximum likelihood estimation (MLE). The experiments also suggest that EMA has two advantages over MLE when dealing with the log-Pearson type III distribution: It appears that EMA estimates always exist and that they are unique, although neither result has been proven. EMA can be used with binomial or interval-censored data and with any distributional family amenable to method-of-moments estimation.

  13. Mobile Phone-Based Unobtrusive Ecological Momentary Assessment of Day-to-Day Mood: An Explorative Study

    PubMed Central

    Ruwaard, Jeroen; Ejdys, Michal; Schrader, Niels; Sijbrandij, Marit; Riper, Heleen

    2016-01-01

    Background Ecological momentary assessment (EMA) is a useful method to tap the dynamics of psychological and behavioral phenomena in real-world contexts. However, the response burden of (self-report) EMA limits its clinical utility. Objective The aim was to explore mobile phone-based unobtrusive EMA, in which mobile phone usage logs are considered as proxy measures of clinically relevant user states and contexts. Methods This was an uncontrolled explorative pilot study. Our study consisted of 6 weeks of EMA/unobtrusive EMA data collection in a Dutch student population (N=33), followed by a regression modeling analysis. Participants self-monitored their mood on their mobile phone (EMA) with a one-dimensional mood measure (1 to 10) and a two-dimensional circumplex measure (arousal/valence, –2 to 2). Meanwhile, with participants’ consent, a mobile phone app unobtrusively collected (meta) data from six smartphone sensor logs (unobtrusive EMA: calls/short message service (SMS) text messages, screen time, application usage, accelerometer, and phone camera events). Through forward stepwise regression (FSR), we built personalized regression models from the unobtrusive EMA variables to predict day-to-day variation in EMA mood ratings. The predictive performance of these models (ie, cross-validated mean squared error and percentage of correct predictions) was compared to naive benchmark regression models (the mean model and a lag-2 history model). Results A total of 27 participants (81%) provided a mean 35.5 days (SD 3.8) of valid EMA/unobtrusive EMA data. The FSR models accurately predicted 55% to 76% of EMA mood scores. However, the predictive performance of these models was significantly inferior to that of naive benchmark models. Conclusions Mobile phone-based unobtrusive EMA is a technically feasible and potentially powerful EMA variant. The method is young and positive findings may not replicate. At present, we do not recommend the application of FSR-based mood

  14. Functional Mapping of an Oligomeric Autotransporter Adhesin of Aggregatibacter actinomycetemcomitans▿

    PubMed Central

    Yu, Chunxiao; Ruiz, Teresa; Lenox, Christopher; Mintz, Keith P.

    2008-01-01

    Extracellular matrix protein adhesin A (EmaA) is a 202-kDa nonfimbrial adhesin, which mediates the adhesion of the oral pathogen Aggregatibacter actinomycetemcomitans to collagen. EmaA oligomers form surface antenna-like protrusions consisting of a long helical rod with an ellipsoidal ending. The functional analysis of in-frame emaA deletion mutants has located the collagen binding activity to the amino terminus of the protein corresponding to amino acids 70 to 386. The level of collagen binding of this deletion mutant was comparable to the emaA mutant strain. Transmission electron microscopy studies indicate that the first 330 amino acids of the mature protein form the ellipsoidal ending of the EmaA protrusions, where the activity resides. Amino acid substitution analysis within this sequence has identified a critical amino acid, which is essential for the formation of the ellipsoidal ending and for collagen binding activity. PMID:18310342

  15. The Chinese Hamster Dihydrofolate Reductase Replication Origin Beta Is Active at Multiple Ectopic Chromosomal Locations and Requires Specific DNA Sequence Elements for Activity

    PubMed Central

    Altman, Amy L.; Fanning, Ellen

    2001-01-01

    To identify cis-acting genetic elements essential for mammalian chromosomal DNA replication, a 5.8-kb fragment from the Chinese hamster dihydrofolate reductase (DHFR) locus containing the origin beta (ori-β) initiation region was stably transfected into random ectopic chromosomal locations in a hamster cell line lacking the endogenous DHFR locus. Initiation at ectopic ori-β in uncloned pools of transfected cells was measured using a competitive PCR-based nascent strand abundance assay and shown to mimic that at the endogenous ori-β region in Chinese hamster ovary K1 cells. Initiation activity of three ectopic ori-β deletion mutants was reduced, while the activity of another deletion mutant was enhanced. The results suggest that a 5.8-kb fragment of the DHFR ori-β region is sufficient to direct initiation and that specific DNA sequences in the ori-β region are required for efficient initiation activity. PMID:11158297

  16. Multiple Lytic Origins of Replication Are Required for Optimal Gammaherpesvirus Fitness In Vitro and In Vivo

    PubMed Central

    Sattler, Christine; Steer, Beatrix; Adler, Heiko

    2016-01-01

    An unresolved question in herpesvirus biology is why some herpesviruses contain more than one lytic origin of replication (oriLyt). Using murine gammaherpesvirus 68 (MHV-68) as model virus containing two oriLyts, we demonstrate that loss of either of the two oriLyts was well tolerated in some situations but not in others both in vitro and in vivo. This was related to the cell type, the organ or the route of inoculation. Depending on the cell type, different cellular proteins, for example Hexim1 and Rbbp4, were found to be associated with oriLyt DNA. Overexpression or downregulation of these proteins differentially affected the growth of mutants lacking either the left or the right oriLyt. Thus, multiple oriLyts are required to ensure optimal fitness in different cell types and tissues. PMID:27007137

  17. Multiple Lytic Origins of Replication Are Required for Optimal Gammaherpesvirus Fitness In Vitro and In Vivo.

    PubMed

    Sattler, Christine; Steer, Beatrix; Adler, Heiko

    2016-03-01

    An unresolved question in herpesvirus biology is why some herpesviruses contain more than one lytic origin of replication (oriLyt). Using murine gammaherpesvirus 68 (MHV-68) as model virus containing two oriLyts, we demonstrate that loss of either of the two oriLyts was well tolerated in some situations but not in others both in vitro and in vivo. This was related to the cell type, the organ or the route of inoculation. Depending on the cell type, different cellular proteins, for example Hexim1 and Rbbp4, were found to be associated with oriLyt DNA. Overexpression or downregulation of these proteins differentially affected the growth of mutants lacking either the left or the right oriLyt. Thus, multiple oriLyts are required to ensure optimal fitness in different cell types and tissues. PMID:27007137

  18. 77 FR 76041 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-26

    ...Notice is hereby given that the Office of Research Integrity (ORI) has taken final action in the following case: Terry S. Elton, Ph.D., The Ohio State University: Based on the reports of two investigations conducted by The Ohio State University (OSU) and additional analysis conducted by ORI in its oversight review, ORI found that Dr. Terry S. Elton, Professor, College of Pharmacy and Davis......

  19. Feasibility and Performance Test of a Real-Time Sensor-Informed Context-Sensitive Ecological Momentary Assessment to Capture Physical Activity

    PubMed Central

    Dzubur, Eldin; Intille, Stephen

    2016-01-01

    Background Objective physical activity monitors (eg, accelerometers) have high rates of nonwear and do not provide contextual information about behavior. Objective This study tested performance and value of a mobile phone app that combined objective and real-time self-report methods to measure physical activity using sensor-informed context-sensitive ecological momentary assessment (CS-EMA). Methods The app was programmed to prompt CS-EMA surveys immediately after 3 types of events detected by the mobile phone’s built-in motion sensor: (1) Activity (ie, mobile phone movement), (2) No-Activity (ie, mobile phone nonmovement), and (3) No-Data (ie, mobile phone or app powered off). In addition, the app triggered random (ie, signal-contingent) ecological momentary assessment (R-EMA) prompts (up to 7 per day). A sample of 39 ethnically diverse high school students in the United States (aged 14-18, 54% female) tested the app over 14 continuous days during nonschool time. Both CS-EMA and R-EMA prompts assessed activity type (eg, reading or doing homework, eating or drinking, sports or exercising) and contextual characteristics of the activity (eg, location, social company, purpose). Activity was also measured with a waist-worn Actigraph accelerometer. Results The average CS-EMA + R-EMA prompt compliance and survey completion rates were 80.5% and 98.5%, respectively. More moderate-to-vigorous intensity physical activity was recorded by the waist-worn accelerometer in the 30 minutes before CS-EMA activity prompts (M=5.84 minutes) than CS-EMA No-Activity (M=1.11 minutes) and CS-EMA No-Data (M=0.76 minute) prompts (P’s<.001). Participants were almost 5 times as likely to report going somewhere (ie, active or motorized transit) in the 30 minutes before CS-EMA Activity than R-EMA prompts (odds ratio=4.91, 95% confidence interval=2.16-11.12). Conclusions Mobile phone apps using motion sensor–informed CS-EMA are acceptable among high school students and may be used to

  20. 42 CFR 93.504 - Grounds for dismissal of a hearing request.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... research misconduct and any administrative actions, including debarment and suspension actions, in...

  1. 42 CFR 93.510 - Filing motions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  2. 42 CFR 93.518 - Witnesses.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  3. 42 CFR 93.509 - Computation of time.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  4. 42 CFR 93.512 - Discovery.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  5. 42 CFR 93.518 - Witnesses.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  6. 42 CFR 93.505 - Rights of the parties.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  7. 42 CFR 93.512 - Discovery.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  8. 42 CFR 93.510 - Filing motions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  9. 42 CFR 93.504 - Grounds for dismissal of a hearing request.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... research misconduct and any administrative actions, including debarment and suspension actions, in...

  10. 42 CFR 93.505 - Rights of the parties.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  11. 42 CFR 93.509 - Computation of time.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... EFFECTS STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  12. 42 CFR 93.504 - Grounds for dismissal of a hearing request.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... research misconduct and any administrative actions, including debarment and suspension actions, in...

  13. 42 CFR 93.510 - Filing motions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  14. 42 CFR 93.504 - Grounds for dismissal of a hearing request.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... research misconduct and any administrative actions, including debarment and suspension actions, in...

  15. 42 CFR 93.518 - Witnesses.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  16. 42 CFR 93.512 - Discovery.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  17. 42 CFR 93.512 - Discovery.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... STUDIES OF HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions...

  18. Specific Detection of Viable Legionella Cells by Combined Use of Photoactivated Ethidium Monoazide and PCR/Real-Time PCR▿

    PubMed Central

    Chang, Bin; Sugiyama, Kanji; Taguri, Toshitsugu; Amemura-Maekawa, Junko; Kura, Fumiaki; Watanabe, Haruo

    2009-01-01

    Legionella organisms are prevalent in manmade water systems and cause legionellosis in humans. A rapid detection method for viable Legionella cells combining ethidium monoazide (EMA) and PCR/real-time PCR was assessed. EMA could specifically intercalate and cleave the genomic DNA of heat- and chlorine-treated dead Legionella cells. The EMA-PCR assay clearly showed an amplified fragment specific for Legionella DNA from viable cells, but it could not do so for DNA from dead cells. The number of EMA-treated dead Legionella cells estimated by real-time PCR exhibited a 104- to 105-fold decrease compared to the number of dead Legionella cells without EMA treatment. Conversely, no significant difference in the numbers of EMA-treated and untreated viable Legionella cells was detected by the real-time PCR assay. The combined assay was also confirmed to be useful for specific detection of culturable Legionella cells from water samples obtained from spas. Therefore, the combined use of EMA and PCR/real-time PCR detects viable Legionella cells rapidly and specifically and may be useful in environmental surveillance for Legionella. PMID:18978073

  19. Microwave ablation versus laser ablation in occluding lateral veins in goats.

    PubMed

    Wang, Xu-hong; Wang, Xiao-ping; Su, Wen-juan; Yuan, Yuan

    2016-02-01

    Increasing number of endovenous techniques are available for the treatment of saphenous vein reflux and endovenous laser ablation (EVLA) is a frequently used method. A newly developed alternative, based on thermal therapy, is endovenous microwave ablation (EMA). This study evaluated the effect of the two procedures, in terms of coagulation and histological changes, in occluding lateral veins in goats. Twelve animals were randomized into two group, with 6 treated with EMA (EMA group), and the rest 6 with EVLA (EVLA group). Results of coagulation, including coagulation, fibrinolysis and platelet activation, were assessed at three or four different time points: before, immediately after, 24 h (and 48 h) after ablation. The diameter change, a measure of efficacy, was ultrasonographically measured before and 1 month after the ablation. Histological changes were grossly and microscopically evaluated immediately, 1 and 3 month(s) after the ablation. The length of the ablated vein and preoperative average diameter were comparable between the two groups. In both EMA and EVLA groups, several coagulation parameters, fibrinolysis and platelet activation parameters only underwent slight changes. Ultrasound imaging displayed that the diameter reduction of the veins treated by EMA was significantly larger than by EVLA, in consistent with the results of macroscopic examination. Microscopic examination revealed necrosis and thickening of the vein wall, and occlusion of the lumen within 3 months after ablation in both EMA and EVLA groups. It is concluded that EMA is a minimally invasive therapy, which appears to be safe and effective for treatment of lateral veins in goats. PMID:26838749

  20. Effects of engineered application of Eichhornia crassipes on the benthic macroinvertebrate diversity in Lake Dianchi, an ultra-eutrophic lake in China.

    PubMed

    Zhang, Zhiyong; Wang, Zhi; Zhang, Zhenghua; Zhang, Junqian; Guo, Junyao; Li, Enhua; Wang, Xuelei; Liu, Haiqin; Yan, Shaohua

    2016-05-01

    An ecological engineering project with confined growth of 1.5 km(2) of Eichhornia crassipes was implemented to remove pollutants in Lake Dianchi. To assess the ecological effects of this project on benthic macroinvertebrate assemblages, a 1-year investigation at the areas inside and outside E. crassipes mats was conducted from May 2013 to May 2014. All the 10 sampling sites in the areas were grouped into two statistically significant clusters mainly corresponding to inside and outside E. crassipes mat areas (EMAs), by clustering analysis. E. crassipes reduced the densities of pollution indicator taxa (e.g., Oligochaeta and Chironomidae larvae); thus, the total densities of benthic macroinvertebrates at the area inside EMAs (mean 328.2 ind./m(2)) were slightly lower than that at the area outside EMAs (mean 505.6 ind./m(2)). Four functional feeding groups including 38 species of benthic macroinvertebrates were collected at the area inside EMAs, while only three functional feeding groups containing 17 species were collected at the area outside EMAs. The biodiversity indices (Shannon-Weiner, Margalef, Simpson, and Peilou indices) and K-dominance curves also showed higher diversity of benthic macroinvertebrates at the area inside EMAs than at the area outside EMAs. These results suggested that a certain scale of engineering application of E. crassipes was beneficial to benthic macroinvertebrate communities in the ultra-eutrophic Lake Dianchi and it could be used as a pioneer species in ultra-eutrophic lake for pollutant removal. PMID:26780060

  1. A jellyfish-like swimming mini-robot actuated by an electromagnetic actuation system

    NASA Astrophysics Data System (ADS)

    Ko, Youngho; Na, Sungyoung; Lee, Youngwoo; Cha, Kyoungrae; Ko, Seong Young; Park, Jongoh; Park, Sukho

    2012-05-01

    Among the various kinds of actuations for biomimetic robots, the electromagnetic actuation (EMA) method has been regarded as the one with the most potential. This paper proposes a jellyfish-like swimming mini-robot actuated by an EMA system in three-dimensional (3D) space. The jellyfish-like mini-robot has four flexible fins, each of which is equipped with a permanent magnet for electromagnetic actuation; the robot’s body is 17 mm long and 0.5 mm thick. Our EMA system was able to generate a uniform magnetic field in a desired direction in 3D space, which could bend the fins of the jellyfish-like mini-robot. Therefore, a cyclic change in the uniform magnetic field, in the EMA system, would synchronize the fluctuation of the fins and could generate a propulsion force for the robot, in the desired direction. In order to maximize the propulsion force of the jellyfish-like mini-robot, the waveform and frequency of the input current in the EMA system are optimized. Consequently, our jellyfish-like mini-robot was able to generate maximum propulsion force when a square waveform input current (13 A magnitude and 10 Hz frequency) was applied to the EMA system. Finally, the jellyfish-like mini-robot with the EMA system was able to perform various 3D swimming motions.

  2. Background for Real-Time Monitoring and Intervention Related to Alcohol Use

    PubMed Central

    Beckjord, Ellen; Shiffman, Saul

    2014-01-01

    Real-time assessment, known as ecological momentary assessment (EMA), and real-time intervention (ecological momentary intervention [EMI]) can significantly extend the reach and impact of interventions to help individuals reduce their drinking behavior. For EMA, the user provides information on the variable of interest (e.g., drinking or craving) via a mobile device. This data reporting can occur either at pre-specified times or in certain high-risk situations. The primary benefits of EMA include external validity, minimized recall bias, and the ability to capture dynamic patterns in human behavior. EMI refers to interventions that are delivered via mobile devices at the time when the user needs it (i.e., in a high-risk situation). Key constructs of EMI are what interventions are delivered and when they are delivered. The timing of the EMI often is determined by the user’s EMA reports. Both EMA and EMI have been studied in people with alcohol use disorders. EMA and EMI often are used in conjunction with each other because EMA can help inform the optimal timing of EMI and help tailor its content. Further development of high-impact, algorithm-driven, technology-mediated real-time intervention may help reduce drinking and promote positive health behavior change. PMID:26258996

  3. The role of antitissue transglutaminase assay for the diagnosis and monitoring of coeliac disease: a French–Italian multicentre study

    PubMed Central

    Tonutti, E; Visentini, D; Bizzaro, N; Caradonna, M; Cerni, L; Villalta, D; Tozzoli, R

    2003-01-01

    Aims: Tissue transglutaminase (tTG) was recently identified as the major autoantigen in coeliac disease. The aim of this multicentre study was to evaluate the impact of a new immunoenzymatic assay for the detection of IgA anti-tGT antibodies. Methods: Seventy four Italian and French clinical laboratories participated in this study; anti-tTG IgA with an enzyme linked immunosorbent assay (ELISA) method using guinea pig liver extract as the coating antigen, anti-endomysium IgA autoantibodies (EMA), and total serum IgA were determined in 7948 patients, 1162 of whom had coeliac disease (737 untreated cases and 425 on a gluten free diet). A proportion of the sera were then sent to a reference laboratory for anti-tTG retesting with an ELISA method using recombinant human tTG antigen. Results: Seven thousand four hundred and fifty eight (93.8%) sera were EMA/antiguinea pig tTG concordant (positive or negative); 490 (6.2%) were non-concordant. The sensitivity of EMA and antiguinea pig tTG in the 737 untreated patients with coeliac disease was 92.1% and 94.8%, respectively, and the specificity was 99.8% and 99.2%, respectively. Retesting of the discordant sera showed that of the 162 sera classified as EMA negative/antiguinea pig tTG positive, only 49 were positive for human recombinant anti-tTG, and that 39 of these were also EMA positive. Furthermore, of the 36 sera classified as EMA positive/antiguinea pig tTG negative, only two were confirmed as EMA positive. Conclusions: The antiguinea pig tTG assay is more sensitive but less specific than EMA, whereas the antihuman recombinant tTG assay is far more specific and just as sensitive as antiguinea pig tTG. Testing for EMA presents considerable interpretative problems and is difficult to standardise. PMID:12719462

  4. Transcription-dependent DNA transactions in the mitochondrial genome of a yeast hypersuppressive petite mutant.

    PubMed

    Van Dyck, E; Clayton, D A

    1998-05-01

    Mitochondrial DNA (mtDNA) of Saccharomyces cerevisiae contains highly conserved sequences, called rep/ori, that are associated with several aspects of its metabolism. These rep/ori sequences confer the transmission advantage exhibited by a class of deletion mutants called hypersuppressive petite mutants. In addition, because they share features with the mitochondrial leading-strand DNA replication origin of mammals, rep/ori sequences have also been proposed to participate in mtDNA replication initiation. Like the mammalian origins, where transcription is used as a priming mechanism for DNA synthesis, yeast rep/ori sequences contain an active promoter. Although transcription is required for maintenance of wild-type mtDNA in yeast, the role of the rep/ori promoter as a cis-acting element involved in the replication of wild-type mtDNA is unclear, since mitochondrial deletion mutants need neither transcription nor a rep/ori sequence to maintain their genome. Similarly, transcription from the rep/ori promoter does not seem to be necessary for biased inheritance of mtDNA. As a step to elucidate the function of the rep/ori promoter, we have attempted to detect transcription-dependent DNA transactions in the mtDNA of a hypersuppressive petite mutant. We have examined the mtDNA of the well-characterized petite mutant a-1/1R/Z1, whose repeat unit shelters the rep/ori sequence ori1, in strains carrying either wild-type or null alleles of the nuclear genes encoding the mitochondrial transcription apparatus. Complex DNA transactions were detected that take place around GC-cluster C, an evolutionarily conserved GC-rich sequence block immediately downstream from the rep/ori promoter. These transactions are strictly dependent upon mitochondrial transcription. PMID:9566917

  5. Energy Materials Coordinating Committee, fiscal year 1997. Annual technical report

    SciTech Connect

    1998-07-31

    The DOE Energy Materials Coordinating Committee (EMaCC) serves primarily to enhance coordination among the Department`s materials programs and to further effective use of materials expertise within the Department. These functions are accomplished through the exchange of budgetary and planning information among program managers and through technical meetings/workshops on selected topics involving both DOE and major contractors. In addition, EMaCC assists in obtaining materials-related inputs for both intra- and interagency compilations. This report summarizes EMaCC activities for FY 1997 and describes the materials research programs of various offices and divisions within the Department.

  6. Monitoring Dietary Intake and Physical Activity Electronically: Feasibility, Usability, and Ecological Validity of a Mobile-Based Ecological Momentary Assessment Tool

    PubMed Central

    Paulussen, Theo; Kok, Gerjo; Van Empelen, Pepijn

    2013-01-01

    Background Despite the growing body of research on complex lifestyle behaviors (eg, Dietary Intake [DI] and Physical Activity [PA]), monitoring of these behaviors has been hampered by a lack of suitable methods. A possible solution to this deficiency is mobile-based Ecological Momentary Assessment (mEMA), which enables researchers to collect data on participants’ states in real-time by means of a smartphone application. However, feasibility, usability, and ecological validity need to be anticipated and managed in order to enhance the validity of mEMA. Objective To examine the feasibility, usability, and ecological validity of a mEMA application (app) with regard to DI and PA among Dutch vocational education students. Methods The students (n=30) participated in the mEMA study for seven consecutive days. They downloaded the mEMA app on their smartphone. Feasibility and usability of the mEMA app were evaluated by completing an online evaluation after seven days of participation. Ecological validity was measured by assessing the degree to which the content of the mEMA app approximated the real-world setting that was being examined, through several multiple-choice questions. Results Compliance rates, as registered by the mEMA app, declined 46% over a seven-day period, while self-reported compliance, as measured with an online evaluation questionnaire afterwards, indicated a smaller decrease in compliance (29%). The students evaluated the mEMA app as feasible and usable. Ecological validity analyses showed that all DI and almost all PA multiple-choice options were covered with the compound response categories. Conclusions The mEMA app offers the opportunity to assess complex health behaviors (eg, DI and PA) in real-time settings, in which specifically routinized behaviors are involved. However, the mEMA app faced several challenges that needed to be overcome in order to improve its validity. Overall, the present study showed that the mEMA app is a usable and

  7. Design of high power electromechanical actuator for thrust vector control

    NASA Technical Reports Server (NTRS)

    Cowan, J. R.; Myers, W. N.

    1991-01-01

    NASA-Marshall has undertaken the development of electromechanical actuators (EMAs) for thrust vector control (TVC) augmentation system implementation. The TVC EMA presented has as its major components two three-phase brushless dc motors, a two-pass gear-reduction system, and a roller screw for rotary-to-linear motion conversion. System control is furnished by a solid-state electronic controller and power supply; a pair of resolvers deliver position feedback to the controller, such that precise positioning is achieved. Peformance comparisons have been conducted between the EMA and comparable-performance hydraulic systems applicable to TVCs.

  8. Nonrandom minichromosome replication in Escherichia coli K-12.

    PubMed Central

    Koppes, L J; von Meyenburg, K

    1987-01-01

    The intervals between rounds of chromosome and minichromosome replication were measured by density shift experiments and found to be similar. Thus the minichromosome, a lambda asnA oriC bacteriophage, mostly replicates once each division cycle rather than randomly, despite its high copy number. Slight differences between the chromosome and the oriC plasmid are explained. PMID:2947900

  9. 48 CFR 731.205-70 - Overseas recruitment incentive.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 48 Federal Acquisition Regulations System 5 2010-10-01 2010-10-01 false Overseas recruitment... Organizations 731.205-70 Overseas recruitment incentive. Note: the term employee as used in this section means... recruitment incentive (ORI), to the extent the ORI: Is authorized by the contractor's normal policy...

  10. 42 CFR 93.108 - Confidentiality.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... in research misconduct proceedings is limited, to the extent possible, to those who need to know, consistent with a thorough, competent, objective and fair research misconduct proceeding, and as allowed by... complainants to ORI pursuant to an ORI review of research misconduct proceedings under § 93.403. (2) Under §...

  11. 78 FR 47699 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-06

    ...Notice is hereby given that the Office of Research Integrity (ORI) has taken final action in the following case: Pratima Karnik, Ph.D., Case Western Reserve University: Based on the admission of the Respondent, ORI found that Dr. Pratima Karnik, Assistant Professor, Department of Dermatology, Case Western Reserve University (CWRU), engaged in research misconduct in research submitted to the......

  12. Multiple replication origins with diverse control mechanisms in Haloarcula hispanica

    PubMed Central

    Wu, Zhenfang; Liu, Jingfang; Yang, Haibo; Liu, Hailong; Xiang, Hua

    2014-01-01

    The use of multiple replication origins in archaea is not well understood. In particular, little is known about their specific control mechanisms. Here, we investigated the active replication origins in the three replicons of a halophilic archaeon, Haloarcula hispanica, by extensive gene deletion, DNA mutation and genome-wide marker frequency analyses. We revealed that individual origins are specifically dependent on their co-located cdc6 genes, and a single active origin/cdc6 pairing is essential and sufficient for each replicon. Notably, we demonstrated that the activities of oriC1 and oriC2, the two origins on the main chromosome, are differently controlled. A G-rich inverted repeat located in the internal region between the two inverted origin recognition boxes (ORBs) plays as an enhancer for oriC1, whereas the replication initiation at oriC2 is negatively regulated by an ORB-rich region located downstream of oriC2-cdc6E, likely via Cdc6E-titrating. The oriC2 placed on a plasmid is incompatible with the wild-type (but not the ΔoriC2) host strain, further indicating that strict control of the oriC2 activity is important for the cell. This is the first report revealing diverse control mechanisms of origins in haloarchaea, which has provided novel insights into the use and coordination of multiple replication origins in the domain of Archaea. PMID:24271389

  13. Oridonin Attenuates Synaptic Loss and Cognitive Deficits in an Aβ1–42-Induced Mouse Model of Alzheimer’s Disease

    PubMed Central

    Yang, Hui; Li, Chaosheng; Hui, Zhen; Xu, Yun; Zhu, Xiaolei

    2016-01-01

    Synaptic loss induced by beta-amyloid (Aβ) plays a critical role in the pathophysiology of Alzheimer’s disease (AD), but the mechanisms underlying this process remain unknown. In this study, we found that oridonin (Ori) rescued synaptic loss induced by Aβ1–42 in vivo and in vitro and attenuated the alterations in dendritic structure and spine density observed in the hippocampus of AD mice. In addition, Ori increased the expression of PSD-95 and synaptophysin and promoted mitochondrial activity in the synaptosomes of AD mice. Ori also activated the BDNF/TrkB/CREB signaling pathway in the hippocampus of AD mice. Furthermore, in the Morris water maze test, Ori reduced latency and searching distance and increased the number of platform crosses in AD mice. These data suggest that Ori might prevent synaptic loss and improve behavioral symptoms in Aβ1–42-induced AD mice. PMID:26974541

  14. Oridonin Attenuates Synaptic Loss and Cognitive Deficits in an Aβ1-42-Induced Mouse Model of Alzheimer's Disease.

    PubMed

    Wang, Sulei; Yu, Linjie; Yang, Hui; Li, Chaosheng; Hui, Zhen; Xu, Yun; Zhu, Xiaolei

    2016-01-01

    Synaptic loss induced by beta-amyloid (Aβ) plays a critical role in the pathophysiology of Alzheimer's disease (AD), but the mechanisms underlying this process remain unknown. In this study, we found that oridonin (Ori) rescued synaptic loss induced by Aβ1-42 in vivo and in vitro and attenuated the alterations in dendritic structure and spine density observed in the hippocampus of AD mice. In addition, Ori increased the expression of PSD-95 and synaptophysin and promoted mitochondrial activity in the synaptosomes of AD mice. Ori also activated the BDNF/TrkB/CREB signaling pathway in the hippocampus of AD mice. Furthermore, in the Morris water maze test, Ori reduced latency and searching distance and increased the number of platform crosses in AD mice. These data suggest that Ori might prevent synaptic loss and improve behavioral symptoms in Aβ1-42-induced AD mice. PMID:26974541

  15. Eye movement abnormalities.

    PubMed

    Moncayo, Jorge; Bogousslavsky, Julien

    2012-01-01

    Generation and control of eye movements requires the participation of the cortex, basal ganglia, cerebellum and brainstem. The signals of this complex neural network finally converge on the ocular motoneurons of the brainstem. Infarct or hemorrhage at any level of the oculomotor system (though more frequent in the brain-stem) may give rise to a broad spectrum of eye movement abnormalities (EMAs). Consequently, neurologists and particularly stroke neurologists are routinely confronted with EMAs, some of which may be overlooked in the acute stroke setting and others that, when recognized, may have a high localizing value. The most complex EMAs are due to midbrain stroke. Horizontal gaze disorders, some of them manifesting unusual patterns, may occur in pontine stroke. Distinct varieties of nystagmus occur in cerebellar and medullary stroke. This review summarizes the most representative EMAs from the supratentorial level to the brainstem. PMID:22377853

  16. Second-order theory for nonlinear dielectric composites incorporating field fluctuations

    NASA Astrophysics Data System (ADS)

    Ponte Castañeda, P.

    2001-12-01

    This paper deals with the development of an improved second-order theory for estimating the effective behavior of nonlinear composite dielectrics. The theory makes use of the field fluctuations in the phases of the relevant ``linear comparison composite'' to generate improved Maxwell-Garnett (MGA) and effective-medium (EMA) types of approximations for nonlinear media. Similar to the earlier version of the theory, the resulting MGA and EMA predictions are exact to second-order in the contrast, but-unlike the earlier version-the estimates satisfy all known bounds. In particular, the EMA estimates exhibit a nonlinearity-independent percolation threshold, and critical exponents that are consistent with recently developed bounds on these exponents. In addition, the MGA and EMA estimates are shown to yield reasonable predictions for strongly nonlinear composites with ``threshold-type'' nonlinearities, which are extreme cases where earlier methods have been known to sometimes fail.

  17. Resonant mode controllers for launch vehicle applications

    NASA Technical Reports Server (NTRS)

    Schreiner, Ken E.; Roth, Mary Ellen

    1992-01-01

    Electro-mechanical actuator (EMA) systems are currently being investigated for the National Launch System (NLS) as a replacement for hydraulic actuators due to the large amount of manpower and support hardware required to maintain the hydraulic systems. EMA systems in weight sensitive applications, such as launch vehicles, have been limited to around 5 hp due to system size, controller efficiency, thermal management, and battery size. Presented here are design and test data for an EMA system that competes favorably in weight and is superior in maintainability to the hydraulic system. An EMA system uses dc power provided by a high energy density bipolar lithium thionyl chloride battery, with power conversion performed by low loss resonant topologies, and a high efficiency induction motor controlled with a high performance field oriented controller to drive a linear actuator.

  18. Ecological Momentary Assessment in Eating Disorder and Obesity Research: a Review of the Recent Literature.

    PubMed

    Engel, Scott G; Crosby, Ross D; Thomas, Graham; Bond, Dale; Lavender, Jason M; Mason, Tyler; Steffen, Kristine J; Green, Dan D; Wonderlich, Stephen A

    2016-04-01

    Our current understanding of the etiology and maintenance of eating disorders and obesity continues to be far from complete. Similarly, our understanding of determinants of both successful and unsuccessful weight loss surgery is also quite limited. While a number of research methodologies have been applied to these areas, one methodology that has recently seen a rise in popularity is the use of ecological momentary assessment (EMA). EMA allows one to study a variety of variables of interest in the natural environment. The study of eating disorders, obesity, and bariatric surgery has all been conducted using EMA recently. The current study is a review of these areas and summarizes the recent literature (past 3 years) in eating disorders, obesity, and bariatric surgery using EMA methodology. PMID:26893235

  19. Co-registration of speech production datasets from electromagnetic articulography and real-time magnetic resonance imaging

    PubMed Central

    Kim, Jangwon; Lammert, Adam C.; Kumar Ghosh, Prasanta; Narayanan, Shrikanth S.

    2014-01-01

    This paper describes a spatio-temporal registration approach for speech articulation data obtained from electromagnetic articulography (EMA) and real-time Magnetic Resonance Imaging (rtMRI). This is motivated by the potential for combining the complementary advantages of both types of data. The registration method is validated on EMA and rtMRI datasets obtained at different times, but using the same stimuli. The aligned corpus offers the advantages of high temporal resolution (from EMA) and a complete mid-sagittal view (from rtMRI). The co-registration also yields optimum placement of EMA sensors as articulatory landmarks on the magnetic resonance images, thus providing richer spatio-temporal information about articulatory dynamics. PMID:25234914

  20. Persistent organic pollutants in fish tissue in the mid-continental great rivers of the United States

    EPA Science Inventory

    The great rivers of the central United States (Upper Mississippi, Missouri, and Ohio rivers) are significant economic and cultural resources, but their ecological condition is not well quantified. The Environmental Monitoring and Assessment Program for Great River Ecosystems (EMA...

  1. MID-ATLANTIC REGIONAL VULNERABILITY ASSESSMENT

    EPA Science Inventory

    ORD's Regional Vulnerability Assessment (REVA) Program is developing and demonstrating approaches to assess current and future environmental vulnerabilities so that risk management activities can be targeted. The sister program to EMA.P (Environmental Monitoring Assessment Progr...

  2. Status of known T type sources towards the σ Orionis cluster

    NASA Astrophysics Data System (ADS)

    Pena Ramirez, K.; Zapatero Osorio, M. R.; Bejar, V. J. S.

    2015-01-01

    We present the characterization of the three T type candidates (S Ori 70, S Ori 73, and S Ori J053804.65-021352.5) lying in the line of sight towards σ Orionis (˜3 Myr, ˜352 pc, solar metallicity) by means of near-infrared photometric, astrometric, and spectroscopic studies. H-band methane images were collected for all three sources using the LIRIS instrument on the 4.2 m William Herschel Telescope. J-band spectra of resolution ˜500 were obtained for S Ori J053804.65-021352.5 with the ISAAC spectrograph on the 8 m Very Large Telescope (VLT), and public low resolution (R˜50) JH spectra obtained with the Wide Field Camera 3 (WFC3) on board the Hubble Space Telescope (HST) were employed for the spectroscopic classification of S Ori 70 and 73. Accurate proper motions with a typical uncertainty of ±3 mas yr^{-1} were derived using ancient images and new data collected with ISAAC/VLT and WFC3/HST. The three objects were spectroscopically classified as T4.5 ± 0.5 (S Ori 73), T5 ± 0.5 (S Ori J053804.65-021352.5), and T7^{+0.5}_{-1.0} (S Ori 70). These spectral types agree with the H-band methane colors. The proper motions of S Ori 70 and 73 are larger than that of the cluster by >4 σ. The proper motion of S Ori J053804.65-021352.5 is consistent with a null displacement during the time interval of 7.03 yr.

  3. A Mobile Ecological Momentary Assessment Tool (devilSPARC) for Nutrition and Physical Activity Behaviors in College Students: A Validation Study

    PubMed Central

    van Woerden, Irene; Todd, Michael; Brennhofer, Stephanie; Laska, Melissa N; Dunton, Genevieve

    2016-01-01

    Background The majority of nutrition and physical activity assessments methods commonly used in scientific research are subject to recall and social desirability biases, which result in over- or under-reporting of behaviors. Real-time mobile-based ecological momentary assessments (mEMAs) may result in decreased measurement biases and minimize participant burden. Objective The aim was to examine the validity of a mEMA methodology to assess dietary and physical activity levels compared to 24-hour dietary recalls and accelerometers. Methods This study was a pilot test of the SPARC (Social impact of Physical Activity and nutRition in College) study, which aimed to determine the mechanism by which friendship networks impact weight-related behaviors among young people. An mEMA app, devilSPARC, was developed to assess weight-related behaviors in real time. A diverse sample of 109 freshmen and community mentors attending a large southwestern university downloaded the devilSPARC mEMA app onto their personal mobile phones. Participants were prompted randomly eight times per day over the course of 4 days to complete mEMAs. During the same 4-day period, participants completed up to three 24-hour dietary recalls and/or 4 days of accelerometry. Self-reported mEMA responses were compared to 24-hour dietary recalls and accelerometry measures using comparison statistics, such as match rate, sensitivity and specificity, and mixed model odds ratios, adjusted for within-person correlation among repeated measurements. Results At the day level, total dietary intake data reported through the mEMA app reflected eating choices also captured by the 24-hour recall. Entrées had the lowest match rate, and fruits and vegetables had the highest match rate. Widening the window of aggregation of 24-hour dietary recall data on either side of the mEMA response resulted in increased specificity and decreased sensitivity. For physical activity behaviors, levels of activity reported through mEMA

  4. Olive: a key gene required for chlorophyll biosynthesis in Antirrhinum majus.

    PubMed Central

    Hudson, A; Carpenter, R; Doyle, S; Coen, E S

    1993-01-01

    Olive (oli) is a recessive nuclear mutation of Antirrhinum majus which reduces the level of chlorophyll pigmentation and affects the ultrastructure of chloroplasts. The oli-605 allele carries a Tam3 transposon insertion which has allowed the locus to be isolated. The oli gene encodes a large putative protein of 153 kDa which shows homology to the products of two bacterial genes necessary for tetrapyrrole-metal chelation during the synthesis of bacteriochlorophyll or cobyrinic acid. We therefore propose that the product of the oli gene is necessary for a key step of chlorophyll synthesis: the chelation of magnesium by protoporphyrin IX. Somatic reversion of the oli-605 allele produces chimeric plants which indicate that the oli gene functions cell-autonomously. Expression of oli is restricted to photosynthetic cells and repressed by light, suggesting that it may be involved in regulating the rate of chlorophyll synthesis in green tissues. Images PMID:8404842

  5. One-dimensional model of a liquid metal in the effective-medium approximation in the random limit

    NASA Astrophysics Data System (ADS)

    Hasbun, Javier E.

    1989-08-01

    In this paper it is shown that the effective-medium approximation (EMA) of Roth [Phys. Rev. B 9, 2476 (1974)] corresponds to the approximation No. 5 of Klauder [Ann. Phys. 14, 43 (1961)] in the random limit for the one-dimensional delta-function model of a liquid metal. The random EMA results are compared with the exact results obtained by Frisch and Lloyd [Phys. Rev. 120, 1175 (1960)] for this model.

  6. Oral Medicines for Children in the European Paediatric Investigation Plans

    PubMed Central

    van Riet – Nales, Diana A.; Römkens, Erwin G. A. W.; Saint-Raymond, Agnes; Kozarewicz, Piotr; Schobben, Alfred F. A. M.; Egberts, Toine C. G.; Rademaker, Carin M. A.

    2014-01-01

    Introduction Pharmaceutical industry is no longer allowed to develop new medicines for use in adults only, as the 2007 Paediatric Regulation requires children to be considered also. The plans for such paediatric development called Paediatric Investigation Plans (PIPs) are subject to agreement by the European Medicines Agency (EMA) and its Paediatric Committee (PDCO). The aim of this study was to evaluate the key characteristics of oral paediatric medicines in the PIPs and the changes implemented as a result of the EMA/PDCO review. Methods All PIPs agreed by 31 December 2011 were identified through a proprietary EMA-database. PIPs were included if they contained an agreed proposal to develop an oral medicine for children 0 to 11 years. Information on the therapeutic area (EMA classification system); target age range (as defined by industry) and pharmaceutical characteristics (active substance, dosage form(s) as listed in the PIP, strength of each dosage form, excipients in each strength of each dosage form) was extracted from the EMA website or the EMA/PDCO assessment reports. Results A hundred and fifty PIPs were included corresponding to 16 therapeutic areas and 220 oral dosage forms in 431 strengths/compositions. Eighty-two PIPs (37%) included tablets, 44 (20%) liquids and 35 (16%) dosage forms with a specific composition/strength that were stored as a solid but swallowed as a liquid e.g. dispersible tablets. The EMA/PDCO review resulted in an increase of 13 (207 to 220) oral paediatric dosage forms and 44 (387 to 431) dosage forms with a specific composition/strength. For many PIPs, the target age range was widened and the excipient composition and usability aspects modified. Conclusion The EMA/PDCO review realized an increase in the number of requirements for the development of oral dosage forms and a larger increase in the number of dosage forms with a specific composition/strength, both targeting younger children. Changes to their pharmaceutical design were

  7. Rubber elasticity for percolation network consisting of Gaussian chains

    NASA Astrophysics Data System (ADS)

    Nishi, Kengo; Noguchi, Hiroshi; Sakai, Takamasa; Shibayama, Mitsuhiro

    2015-11-01

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation (EMA) for Hookian spring network to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1, G0, must be equal to G/G0 = (p - 2/f)/(1 - 2/f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels.

  8. Rubber Elasticity for percolation network consisting of Gaussian Chains

    NASA Astrophysics Data System (ADS)

    Nishi, Kengo; Shibayama, Mitsuhiro; Sakai, Takamasa

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation for Hookian spring network (EMA) to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1 ,G0, must be equal to G /G0 = (p - 2 / f) / (1 - 2 / f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA, and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels.

  9. Data-based comparisons of moments estimators using historical and paleoflood data

    USGS Publications Warehouse

    England, J.F., Jr.; Jarrett, R.D.; Salas, J.D.

    2003-01-01

    This paper presents the first systematic comparison, using historical and paleoflood data, of moments-based flood frequency methods. Peak flow estimates were compiled from streamflow-gaging stations with historical and/or paleoflood data at 36 sites located in the United States, Argentina, United Kingdom and China, covering a diverse range of hydrologic conditions. The Expected Moments Algorithm (EMA) and the Bulletin 17B historical weighting procedure (B17H) were compared in terms of goodness of fit using 25 of the data sets. Results from this comparison indicate that EMA is a viable alternative to current B17H procedures from an operational perspective, and performed equal to or better than B17H for the data analyzed. We demonstrate satisfactory EMA performance for the remaining 11 sites with multiple thresholds and binomial censoring, which B17H cannot accommodate. It is shown that the EMA estimator readily incorporates these types of information and the LP-III distribution provided an adequate fit to the data in most cases. The results shown here are consistent with Monte Carlo simulation studies, and demonstrate that EMA is preferred overall to B17H. The Bulletin 17B document could be revised to include an option for EMA as an alternative to the existing historical weighting approach. These results are of practical relevance to hydrologists and water resources managers for applications in floodplain management, design of hydraulic structures, and risk analysis for dams. ?? 2003 Elsevier Science B.V. All rights reserved.

  10. Rubber elasticity for percolation network consisting of Gaussian chains

    SciTech Connect

    Nishi, Kengo E-mail: sakai@tetrapod.t.u-tokyo.ac.jp Noguchi, Hiroshi; Shibayama, Mitsuhiro E-mail: sakai@tetrapod.t.u-tokyo.ac.jp; Sakai, Takamasa E-mail: sakai@tetrapod.t.u-tokyo.ac.jp

    2015-11-14

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation (EMA) for Hookian spring network to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1, G{sub 0}, must be equal to G/G{sub 0} = (p − 2/f)/(1 − 2/f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels.

  11. Rubber elasticity for percolation network consisting of Gaussian chains.

    PubMed

    Nishi, Kengo; Noguchi, Hiroshi; Sakai, Takamasa; Shibayama, Mitsuhiro

    2015-11-14

    A theory describing the elastic modulus for percolation networks of Gaussian chains on general lattices such as square and cubic lattices is proposed and its validity is examined with simulation and mechanical experiments on well-defined polymer networks. The theory was developed by generalizing the effective medium approximation (EMA) for Hookian spring network to Gaussian chain networks. From EMA theory, we found that the ratio of the elastic modulus at p, G to that at p = 1, G0, must be equal to G/G0 = (p - 2/f)/(1 - 2/f) if the position of sites can be determined so as to meet the force balance, where p is the degree of cross-linking reaction. However, the EMA prediction cannot be applicable near its percolation threshold because EMA is a mean field theory. Thus, we combine real-space renormalization and EMA and propose a theory called real-space renormalized EMA, i.e., REMA. The elastic modulus predicted by REMA is in excellent agreement with the results of simulations and experiments of near-ideal diamond lattice gels. PMID:26567682

  12. Acceptability and feasibility of a visual working memory task in an ecological momentary assessment paradigm.

    PubMed

    Schuster, Randi Melissa; Mermelstein, Robin J; Hedeker, Donald

    2015-12-01

    Neuropsychological performance has historically been measured in laboratory settings using standardized assessments. However, these methods may be inherently limited in generalizability. This concern may be mitigated with paradigms such as ecological momentary assessment (EMA). We evaluated the initial feasibility and acceptability of administering a visual working memory (VWM) task on handheld computers across 1 EMA study week among adolescents/young adults (N = 39). Participants also completed standardized laboratory neurocognitive measures to determine the extent to which EMA VWM performance mapped onto scores obtained in traditional testing environments. Compliance with the EMA protocol was high as participants responded to 87% of random prompts across the study week. As expected, EMA VWM performance was positively associated with laboratory measures of auditory and VWM, and these relationships persisted after adjusting for predicted intelligence. Further, discriminant validity tests showed that EMA VWM was not linked with laboratory scores of verbal abilities and processing speed. These data provide initial evidence on the convergent and discriminant validity of interpretations from this novel, ecologically valid neurocognitive approach. Future studies will aim to further establish the psychometric properties of this (and similar) tasks and investigate how momentary fluctuations in VWM correspond with contextual influences (e.g., substance use, mood) and clinical outcomes. PMID:25894710

  13. Dielectric Properties of Close-Packed Disordered Suspensions

    NASA Astrophysics Data System (ADS)

    Davis, Victoria Ann

    Multiple scattering techniques are used to calculate the dielectric properties of composites, specifically, close-packed disordered suspensions. Composites are usually described using single-site, long-wavelength approximations which are not applicable for either close-packed or disordered systems. In a suspension, the dielectric properties can be described in terms of electromagnetic waves multiply scattered from the inclusions and, therefore, we can use the power of Multiple-Scattering Theory together with Roth's Effective-Medium Approximation (EMA). The EMA goes beyond previous approximations as it includes particle size effects and local field fluctuations. We apply the EMA to two types of suspensions: (1) strong scattering systems of metal spheres embedded in insulating hosts and (2) a weak scattering system of pressed Al(,2)O(,3) particles. The EMA reproduces the basic features of the relevant experimental results better than other approximations. In order to further explore the utility of the EMA, we examine a model system of a Drude metal in an insulating host. The trends observed in the EMA results are those expected for a close -packed composite on the basis of general theoretical arguments.

  14. Beneficial impacts of a national smokefree environments law on an indigenous population: a multifaceted evaluation

    PubMed Central

    Edwards, Richard; Gifford, Heather; Waa, Andrew; Glover, Marewa; Thomson, George; Wilson, Nick

    2009-01-01

    Background Smokefree environments legislation is increasingly being implemented around the world. Evaluations largely find that the legislation is popular, compliance is high and report improved air quality and reduced exposure to secondhand smoke (SHS). The impact of the legislation on disadvantaged groups, including indigenous peoples has not been explored. We present findings from a multifaceted evaluation of the impact of the smokefree workplace provisions of the New Zealand Smokefree Environments Amendment Act on Māori people in New Zealand. Māori are the indigenous people of New Zealand. The Smokefree Environments Amendment Act extended existing smokefree legislation to almost all indoor workplaces in December 2004 (including restaurants and pubs/bars). Methods Review of existing data and commissioned studies to identify evidence for the evaluation of the new legislation: including attitudes and support for the legislation; stakeholders views about the Act and the implementation process; impact on SHS exposure in workplaces and other settings; and impact on smoking-related behaviours. Results Support for the legislation was strong among Māori and reached 90% for smokefree restaurants and 84% for smokefree bars by 2006. Māori stakeholders interviewed were mostly supportive of the way the legislation had been introduced. Reported exposure to SHS in workplaces decreased similarly in Māori and non-Māori with 27% of employed adult Māori reporting SHS exposure indoors at work during the previous week in 2003 and 9% in 2006. Exposure to SHS in the home declined, and may have decreased more in Māori households containing one or more smokers. For example, the proportion of 14–15 year old Māori children reporting that smoking occurred in their home fell from 47% in 2001 to 37% in 2007. Similar reductions in socially-cued smoking occurred among Māori and non-Māori. Evidence for the effect on smoking prevalence was mixed. Māori responded to the new law with

  15. Identification and comparative oridonin metabolism in different species liver microsomes by using UPLC-Triple-TOF-MS/MS and PCA.

    PubMed

    Ma, Yinghua; Xie, Weiwei; Tian, Tingting; Jin, Yiran; Xu, Huijun; Zhang, Kerong; Du, Yingfeng

    2016-10-15

    Oridonin (ORI) is an active natural ent-kaurene diterpenoid ingredient with notable anti-cancer and anti-inflammation activities. Currently, a strategy was developed to identify metabolites and to assess the metabolic profiles of ORI in vitro using ultra-high-performance liquid chromatography-Triple/time-of-flight mass spectrometry (UPLC-Triple-TOF-MS/MS). Meanwhile, the metabolism differences of ORI in the liver microsomes of four different species were investigated using a principal component analysis (PCA) based on the metabolite absolute peak area values as the variables. Based on the proposed methods, 27 metabolites were structurally characterized. The results indicate that ORI is universally metabolized in vitro, and the metabolic pathway mainly includes dehydration, hydroxylation, di-hydroxylation, hydrogenation, decarboxylation, and ketone formation. Overall, there are obvious inter-species differences in types and amounts of ORI metabolites in the four species. These results will provide basic data for future pharmacological and toxicological studies of ORI and for other ent-kauranes diterpenoids. Meanwhile, studying the ORI metabolic differences helps to select the proper animal model for further pharmacology and toxicological assessment. PMID:27503750

  16. EBV latency types adopt alternative chromatin conformations.

    PubMed

    Tempera, Italo; Klichinsky, Michael; Lieberman, Paul M

    2011-07-01

    Epstein-Barr Virus (EBV) can establish latent infections with distinct gene expression patterns referred to as latency types. These different latency types are epigenetically stable and correspond to different promoter utilization. Here we explore the three-dimensional conformations of the EBV genome in different latency types. We employed Chromosome Conformation Capture (3C) assay to investigate chromatin loop formation between the OriP enhancer and the promoters that determine type I (Qp) or type III (Cp) gene expression. We show that OriP is in close physical proximity to Qp in type I latency, and to Cp in type III latency. The cellular chromatin insulator and boundary factor CTCF was implicated in EBV chromatin loop formation. Combining 3C and ChIP assays we found that CTCF is physically associated with OriP-Qp loop formation in type I and OriP-Cp loop formation in type III latency. Mutations in the CTCF binding site located at Qp disrupt loop formation between Qp and OriP, and lead to the activation of Cp transcription. Mutation of the CTCF binding site at Cp, as well as siRNA depletion of CTCF eliminates both OriP-associated loops, indicating that CTCF plays an integral role in loop formation. These data indicate that epigenetically stable EBV latency types adopt distinct chromatin architectures that depend on CTCF and mediate alternative promoter targeting by the OriP enhancer. PMID:21829357

  17. Inhibition of structural changes in the simian virus 40 core origin of replication by mutation of essential origin sequences.

    PubMed Central

    Borowiec, J A

    1992-01-01

    Mutation of the simian virus 40 (SV40) origin of replication (ori) has revealed the presence of three critical domains needed for DNA replication. The outer two domains, the AT tract and early palindrome element (EP), colocalize with DNA regions that become structurally altered in the presence of the SV40 large tumor antigen (T antigen) and ATP. Mutations within each domain were examined for their effect on the distortion of ori DNA by T antigen, as assayed by the sensitivity of DNA to KMnO4 oxidation. We have found that mutations in the AT tract that inhibit SV40 DNA replication also inhibit the distortion of the AT tract. Similarly, mutations in the EP inhibited the generation of structural changes in this element by T antigen. Although AT-tract mutations or mutations on the late side of ori affected structural changes only in the AT tract, certain EP mutations or mutations on the early side of ori also inhibited AT-tract distortion. Mutation of the flanking regions did not significantly affect either the affinity of T antigen for ori or the rate of binding to ori. We conclude from these results that the primary function of the flanking ori domains is to undergo structural changes required during the initiation of SV40 DNA replication. Moreover, our results suggest that the efficiency of replication initiation is significantly affected by the degree to which the flanking elements undergo a structural transition. Images PMID:1323692

  18. Second outburst phase of a young eruptive star V1647 Orionis (McNeil's nebula)

    NASA Astrophysics Data System (ADS)

    Ninan, J. P.; Ojha, D. K.; Mallick, K. K.; Ghosh, S. K.; Joshi, J. S.

    2013-06-01

    Young low mass stars still embedded in dust and molecular gas pass through a stage of outbursts. These outbursts are due to sudden increase in accretion rate from the inner disc. V1647 Orionis underwent an FU Ori kind of outburst in 2004 and returned to its pre-outburst phase in early 2006. Within just 2 years it again underwent a second outburst in 2008; such an event is rarely seen in FU Ori type of outburst. We therefore followed the source in its second outburst phase from 2-m Himalayan Chandra Telescope (HCT) and 2-m IUCAA Girawali Observatory (IGO) Telescope. Our optical and near-infrared (NIR) photometric data show that the source is undergoing a slow but steady dimming of ˜ 0.3 - 0.5 mag since the recent second outburst. It seems that the observed properties of the outburst of V1647 Ori are different from both the EX Ori and FU Ori type of outbursts, and suggest that this star probably represents a new type of eruptive young star, to be different from both FU Ori and EX Ori classes.

  19. Detector development for microPET II: a 1 microl resolution PET scanner for small animal imaging.

    PubMed

    Chatziioannou, A; Tai, Y C; Doshi, N; Cherry, S R

    2001-11-01

    We are currently developing a small animal positron emission tomography (PET) scanner with a design goal of 1 microlitre (1 mm3) image resolution. The detectors consist of a 12 x 12 array of 1 x 1 x 10 mm lutetium oxyorthosilicate (LSO) scintillator crystals coupled to a 64-channel photomultiplier tube (PMT) via 5 cm long optical fibre bundles. The optical fibre connection allows a high detector packing fraction despite the dead space surrounding the active region of the PMT. Optical fibre bundles made from different types of glass were tested for light transmission, and also their effects on crystal identification and energy resolution, and compared to direct coupling of the LSO arrays to the PMTs. We also investigated the effects of extramural absorber (EMA) in the fibre bundles. Based on these results, fibre bundles manufactured from F2 glass were selected. We built three pairs of prototype detectors (directly coupled LSO array, fibre bundle without EMA and fibre bundle with EMA) and measured flood histograms, energy resolution, intrinsic spatial resolution and timing resolution. The results demonstrated an intrinsic spatial resolution (FWHM) of 1.12 mm (directly coupled), 1.23 mm (fibre bundle without EMA coupling) and 1.27 mm (fibre bundle with EMA coupling) using an approximately 500 microm diameter Na-22 point source. Using a 330 microm outer diameter steel needle line source filled with F-18, spatial resolution for the detector with the EMA optical fibre bundle improved to 1.05 mm. The respective timing and energy FWHM values were 1.96 ns, 21% (directly coupled), 2.20 ns, 23% (fibre bundle without EMA) and 2.99 ns, 30% (fibre bundle with EMA). The peak-to-valley ratio in the flood histograms was better with EMA (5:1) compared to the optical fibre bundle without EMA (2.5:1), due to the decreased optical cross-talk. In comparison to the detectors used in our current generation microPET scanner, these detectors substantially improve on the spatial resolution

  20. Identification of metabolites of oridonin in rats with a single run on UPLC-Triple-TOF-MS/MS system based on multiple mass defect filter data acquisition and multiple data processing techniques.

    PubMed

    Tian, Tingting; Jin, Yiran; Ma, Yinghua; Xie, Weiwei; Xu, Huijun; Zhang, Kerong; Zhang, Lantong; Du, Yingfeng

    2015-12-01

    Oridonin (ORI) is an active natural ent-kaurane diterpenoid ingredient originating from well-known traditional Chinese herb medicine and is expected to be pursued as a new anticancer agent. In the present study, a novel and efficient approach was developed for in vivo screening and identification of ORI metabolites using ultra high performance liquid chromatography coupled with hybrid triple quadrupole time-of-flight mass spectrometry (UPLC-Triple-TOF-MS/MS). This analytical strategy was as follows: an effective on-line data acquisition method multiple mass defect filter (MMDF) combined with dynamic background subtraction (DBS), was developed to trace all of potential metabolites of ORI. The MMDF and DBS method could trigger an information dependent acquisition scan, which could give the information of low-level metabolites masked by background noise and endogenous components in complex matrix. Moreover, the sensitive and specific multiple data-mining techniques including extracted ion chromatography, mass defect filtering, product ion filtering and neutral loss filtering were employed to identify the metabolites of ORI. Then, structures for the metabolites were successfully assigned based on accurate masses, the mass fragmentation of ORI and metabolic knowledge. Finally, an important parameter Clog P was used to estimate the retention time of isomers. Based on the proposed strategy, 16 phase I and 2 phase II metabolites were detected in rats after oral administration of ORI. The main biotransformation route of ORI was identified as reduction, oxidation, dehydroxylation and glucuronic acid conjugation. This is the first study of ORI metabolism in vivo. This study not only proposed a practical strategy for rapidly screening and identifying metabolites, but also provided useful information for further study of the pharmacology and mechanism of ORI in vivo. At the same time this methodology can be widely applied for the structural characterization of the metabolites

  1. CHANDRA REVEALS VARIABLE MULTI-COMPONENT X-RAY EMISSION FROM FU ORIONIS

    SciTech Connect

    Skinner, Stephen L.; Guedel, Manuel; Briggs, Kevin R.; Lamzin, Sergei A.

    2010-10-20

    FU Orionis is the prototype of a class of eruptive young stars ('FUors') characterized by strong optical outbursts. We recently completed an exploratory survey of FUors using XMM-Newton to determine their X-ray properties, about which little was previously known. The prototype FU Ori and V1735 Cyg were detected. The X-ray spectrum of FU Ori was found to be unusual, consisting of a cool moderately absorbed component plus a hotter component viewed through an absorption column density that is an order of magnitude higher. We present here a sensitive (99 ks) follow-up X-ray observation of FU Ori obtained at higher angular resolution with Chandra ACIS-S. The unusual multi-component spectrum is confirmed. The hot component is centered on FU Ori and dominates the emission above 2 keV. It is variable (a signature of magnetic activity) and is probably coronal emission originating close to FU Ori's surface viewed through cool gas in FU Ori's strong wind or accretion stream. In contrast, the X-ray centroid of the soft emission below 2 keV is offset 0.''20 to the southeast of FU Ori, toward the near-IR companion (FU Ori S). This offset amounts to slightly less than half the separation between the two stars. The most likely explanation for the offset is that the companion contributes significantly to the softer X-ray emission below 2 keV (and weakly above 2 keV). The superimposed X-ray contributions from FU Ori and the companion resolve the paradox posed by XMM-Newton of an apparently single X-ray source viewed through two different absorption columns.

  2. Historical model for editor and Office of Research Integrity cooperation in handling allegations, investigation, and retraction in a contentious (Abbs) case of research misconduct.

    PubMed

    Price, Alan R; Daroff, Robert B

    2015-01-01

    Cooperation between a journal editor and the federal Office of Research Integrity (ORI) in addressing investigations of research misconduct, each performing their own responsibilities while keeping each other informed of events and evidence, can be critical to the professional and regulatory resolution of a case. This paper describes the history of one of ORI's most contentious investigations that involved falsification of research on Parkinson's disease patients by James Abbs, Professor of Neurology, University of Wisconsin, published in the journal Neurology, which was handled cooperatively by the authors, who were the chief ORI investigator and the Editor-in-Chief of Neurology, respectively. PMID:25397599

  3. GW Orionis: Inner disk readjustments in a triple system

    NASA Astrophysics Data System (ADS)

    Fang, M.; Sicilia-Aguilar, A.; Roccatagliata, V.; Fedele, D.; Henning, Th.; Eiroa, C.; Müller, A.

    2014-10-01

    Context. Disks are expected to dissipate quickly in binary or multiple systems. Investigating such systems can improve our knowledge of the disk dispersal. The triple system GW Ori, still harboring a massive disk, is an excellent target. Aims: We study the young stellar system GW Ori, concentrating on its accretion, wind activity and disk properties. Methods: We use high-resolution optical spectra of GW Ori to do spectral classification and derive the radial velocities (RV). We analyze the wind and accretion activity using the emission lines in the spectra. We also use U-band photometry, which has been collected from the literature, to study the accretion variability of GW Ori. We characterize the disk properties of GW Ori by modeling its spectral energy distribution (SED). Results.By comparing our data to the synthetical spectra, we classify GW Ori as a G8 star. Based on the RVs derived from the optical spectra, we confirm the previous result as a close companion in GW Ori with a period of ~242 days and an orbital semi-major axis of ~1 AU. The RV residuals after the subtraction of the orbital solution with the equivalent widths (EW) of accretion-related emission lines vary with periods of 5-6.7 days during short-time intervals, which are caused by the rotational modulation. The Hα and Hβ line profiles of GW Ori can be decomposed in two central-peaked emission components and one blue-shifted absorption component. The blue-shifted absorption components are due to a disk wind modulated by the orbital motion of the close companion. Therefore, the systems like GW Ori can be used to study the extent of disk winds. We find that the accretion rates of GW Ori are rather constant but can occasionally be enhanced by a factor of 2-3. We reproduce the SED of GW Ori by using disk models with gaps ~25-55 AU in size. A small population of tiny dust particles within the gap produces the excess emission at near-infrared bands and the strong and sharp silicate feature at 10

  4. Encephaloduroarteriosynangiosis and encephalomyoarteriosynangiosis for treatment of moyamoya syndrome in pediatric patients with sickle cell disease.

    PubMed

    Griessenauer, Christoph J; Lebensburger, Jeffrey D; Chua, Michelle H; Fisher, Winfield S; Hilliard, Lee; Bemrich-Stolz, Christina J; Howard, Thomas H; Johnston, James M

    2015-07-01

    OBJECT Pediatric patients with sickle cell disease (SCD) and moyamoya syndrome (MMS) are at significant risk for cerebrovascular accidents despite chronic transfusion therapy. Encephaloduroarteriosynangiosis (EDAS) and encephalomyoarteriosynangiosis (EMAS) are additional therapeutic options for these patients. To date, the incidence of complications after and efficacy of EDAS and EMAS in stroke prevention in this population have been described in several institutional case series reports, but no randomized prospective trials have been reported. METHODS The authors retrospectively reviewed the cases of all pediatric patients at the University of Alabama at Birmingham with a history of homozygous hemoglobin S (HbS) and sickle cell/β-thalassemia (SB0 thalassemia) and on chronic transfusion therapy, including 14 patients with MMS who underwent EDAS or EMAS. RESULTS Sixty-two patients with SCD and on chronic transfusion therapy were identified. After exclusion of patients on chronic transfusion therapy for indications other than stroke prevention, 48 patients (77.4%) remained. Of those patients, 14 (29.1%) underwent EDAS or EMAS. Nine (18.8%) and 25 (52.1%) patients were on chronic transfusion therapy for primary or secondary stroke prevention, respectively, but did not undergo EDAS or EMAS. The 14 patients with SCD and radiological evidence of MMS and on chronic transfusion therapy for primary or secondary stroke prevention underwent 21 EDAS or EMAS procedures for progressive vascular disease (92.9% of patients), stroke (71.4%), and/or seizure (7.1%). The mean (± SD) time from initiation of chronic transfusion therapy to EDAS or EMAS was 76.8 ± 58.8 months. Complications included 1 perioperative stroke, 1 symptomatic subdural hygroma, 1 postoperative seizure, and 1 case of intraoperative cerebral edema that required subsequent cranioplasty. Before EDAS or EMAS, the stroke rate was calculated to be 1 stroke per 7.8 patient-years. One additional stroke occurred during

  5. The Relationship Between Oxygen Reserve Index and Arterial Partial Pressure of Oxygen During Surgery

    PubMed Central

    Dorotta, Ihab L.; Wells, Briana; Juma, David; Applegate, Patricia M.

    2016-01-01

    BACKGROUND: The use of intraoperative pulse oximetry (Spo2) enhances hypoxia detection and is associated with fewer perioperative hypoxic events. However, Spo2 may be reported as 98% when arterial partial pressure of oxygen (Pao2) is as low as 70 mm Hg. Therefore, Spo2 may not provide advance warning of falling arterial oxygenation until Pao2 approaches this level. Multiwave pulse co-oximetry can provide a calculated oxygen reserve index (ORI) that may add to information from pulse oximetry when Spo2 is >98%. This study evaluates the ORI to Pao2 relationship during surgery. METHODS: We studied patients undergoing scheduled surgery in which arterial catheterization and intraoperative arterial blood gas analysis were planned. Data from multiple pulse co-oximetry sensors on each patient were continuously collected and stored on a research computer. Regression analysis was used to compare ORI with Pao2 obtained from each arterial blood gas measurement and changes in ORI with changes in Pao2 from sequential measurements. Linear mixed-effects regression models for repeated measures were then used to account for within-subject correlation across the repeatedly measured Pao2 and ORI and for the unequal time intervals of Pao2 determination over elapsed surgical time. Regression plots were inspected for ORI values corresponding to Pao2 of 100 and 150 mm Hg. ORI and Pao2 were compared using mixed-effects models with a subject-specific random intercept. RESULTS: ORI values and Pao2 measurements were obtained from intraoperative data collected from 106 patients. Regression analysis showed that the ORI to Pao2 relationship was stronger for Pao2 to 240 mm Hg (r2 = 0.536) than for Pao2 over 240 mm Hg (r2 = 0.0016). Measured Pao2 was ≥100 mm Hg for all ORI over 0.24. Measured Pao2 was ≥150 mm Hg in 96.6% of samples when ORI was over 0.55. A random intercept variance component linear mixed-effects model for repeated measures indicated that Pao2 was significantly related to ORI

  6. Disturbance of energy and redox homeostasis and reduction of Na+,K+-ATPase activity provoked by in vivo intracerebral administration of ethylmalonic acid to young rats.

    PubMed

    Ritter, Luciana; Kleemann, Daniele; Hickmann, Fernanda Hermes; Amaral, Alexandre Umpierrez; Sitta, Ângela; Wajner, Moacir; Ribeiro, César Augusto João

    2015-05-01

    Ethylmalonic acid (EMA) accumulation occurs in various metabolic diseases with neurological manifestation, including short acyl-CoA dehydrogenase deficiency (SCADD) and ethylmalonic encephalopathy (EE). Since pathophysiological mechanisms responsible for brain damage in these disorders are still poorly understood, we investigated the ex vivo effects of acute intrastriatal administration of EMA on important parameters of energy and redox homeostasis in striatum from young rats. We evaluated CO(2) production from glucose, glucose utilization and lactate production, as well as the activities of the citric acid cycle (CAC) enzymes, the electron transfer chain (ETC) complexes II-IV (oxidative phosphorylation, OXPHOS) and synaptic Na(+),K(+)-ATPase. We also tested the effect of EMA on malondialdehyde (MDA) levels (marker of lipid oxidation) and reduced glutathione (GSH) levels. EMA significantly reduced CO(2) production, increased glucose utilization and lactate production, and reduced the activities of citrate synthase and of complexes II and II-III of the ETC, suggesting an impairment of CAC and OXPHOS. EMA injection also reduced Na(+),K(+)-ATPase activity and GSH concentrations, whereas MDA levels were increased. Furthermore, EMA-induced diminution of Na(+),K(+)-ATPase activity and reduction of GSH levels were prevented, respectively, by the antioxidants melatonin and N-acetylcysteine, indicating that reactive species were involved in these effects. Considering the importance of CAC and ETC for energy production and Na(+),K(+)-ATPase for the maintenance of the cell membrane potential, the present data indicate that EMA compromises mitochondrial homeostasis and neurotransmission in striatum. We presume that these pathomechanisms may be involved to a certain extent in the neurological damage found in patients affected by SCADD and EE. PMID:25583115

  7. Comparisons of two moments-based estimators that utilize historical and paleoflood data for the log Pearson type III distribution

    USGS Publications Warehouse

    England, J.F., Jr.; Salas, J.D.; Jarrett, R.D.

    2003-01-01

    The expected moments algorithm (EMA) [Cohn et al., 1997] and the Bulletin 17B [Interagency Committee on Water Data, 1982] historical weighting procedure (B17H) for the log Pearson type III distribution are compared by Monte Carlo computer simulation for cases in which historical and/or paleoflood data are available. The relative performance of the estimators was explored for three cases: fixed-threshold exceedances, a fixed number of large floods, and floods generated from a different parent distribution. EMA can effectively incorporate four types of historical and paleoflood data: floods where the discharge is explicitly known, unknown discharges below a single threshold, floods with unknown discharge that exceed some level, and floods with discharges described in a range. The B17H estimator can utilize only the first two types of historical information. Including historical/paleoflood data in the simulation experiments significantly improved the quantile estimates in terms of mean square error and bias relative to using gage data alone. EMA performed significantly better than B17H in nearly all cases considered. B17H performed as well as EMA for estimating X100 in some limited fixed-threshold exceedance cases. EMA performed comparatively much better in other fixed-threshold situations, for the single large flood case, and in cases when estimating extreme floods equal to or greater than X500. B17H did not fully utilize historical information when the historical period exceeded 200 years. Robustness studies using GEV-simulated data confirmed that EMA performed better than B17H. Overall, EMA is preferred to B17H when historical and paleoflood data are available for flood frequency analysis.

  8. The Landsat Data Continuity Mission Operational Land Imager: Pre-Launch Performance

    NASA Technical Reports Server (NTRS)

    Markham, Brian L.; Knight, Edward J.; Canova, Brent; Donley, Eric; Kvaran, Geir; Lee, Kenton

    2011-01-01

    The Operational Land Imager(OLI) will be the main instrument on Landsat-8 when it launches in 2012. OLI represents a generational change from heritage Landsat instruments in its design but must maintain data continuity with the 30+ year Landsat data archive. As a result, OLI has undergone a stringent calibration and characterization campaign to ensure its characteristics are understood and consistent with past instruments. This paper presents an overview of the OLI design, its major differences from previous Landsat instruments, and a summary of its expected performance.

  9. Towards an indigenous science curriculum

    NASA Astrophysics Data System (ADS)

    McKinley, Elizabeth

    1996-06-01

    The recent development of a national science curriculum in Māori opened up space to contest whose knowledge and whose ways of knowing are included. This paper outlines the background to the curriculum development work in Aotearoa New Zealand with respect to the indigenous Māori people and science education. Concern is expressed about the fitting of one cultural framework into another and questions are raised about the approach used in the development of the science curriculum. Further research in the area of language, culture and science education is discussed along with how Māori might move forward in the endeavour of developing a curriculum that reflects Māori culture and language.

  10. 78 FR 72892 - Findings of Research Misconduct

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-04

    ... Manager, DNA Extraction and Staging Laboratory (DESL), SAIC-Frederick, Inc., the Operations and Technical..., ORI found that Respondent fabricated the quantitative and qualitative data for RNA and DNA...

  11. 42 CFR 93.516 - Standard and burden of proof.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative... findings of research misconduct. The destruction, absence of, or respondent's failure to provide research records adequately documenting the questioned research is evidence of research misconduct where...

  12. 42 CFR 93.513 - Submission of witness lists, witness statements, and exhibits.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.513 Submission of witness...

  13. 42 CFR 93.516 - Standard and burden of proof.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative... findings of research misconduct. The destruction, absence of, or respondent's failure to provide research records adequately documenting the questioned research is evidence of research misconduct where...

  14. 42 CFR 93.25 - Organization of this part.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... RESEARCH MISCONDUCT § 93.25 Organization of this part. This part is subdivided into five subparts. Each... Research Integrity. E Information on how to contest ORI research misconduct findings and HHS...

  15. 42 CFR 93.514 - Amendment to the charge letter.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... findings of research misconduct up to 30 days before the scheduled hearing. (b) The ALJ may...

  16. 42 CFR 93.101 - Purpose.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT General... Office of Research Integrity (ORI), and institutions in responding to research misconduct issues; (b) Define what constitutes misconduct in PHS supported research; (c) Define the general types...

  17. 42 CFR 93.514 - Amendment to the charge letter.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... findings of research misconduct up to 30 days before the scheduled hearing. (b) The ALJ may...

  18. 42 CFR 93.101 - Purpose.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT General... Office of Research Integrity (ORI), and institutions in responding to research misconduct issues; (b) Define what constitutes misconduct in PHS supported research; (c) Define the general types...

  19. 42 CFR 93.513 - Submission of witness lists, witness statements, and exhibits.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.513 Submission of witness...

  20. 42 CFR 93.523 - The Administrative Law Judge's ruling.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... accordance with 45 CFR 76.845(c). The decision of the debarring official on debarment or suspension is...

  1. 42 CFR 93.515 - Actions for violating an order or for disruptive conduct.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.515 Actions for violating an order or...

  2. 42 CFR 93.515 - Actions for violating an order or for disruptive conduct.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.515 Actions for violating an order or...

  3. 42 CFR 93.523 - The Administrative Law Judge's ruling.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... accordance with 45 CFR 76.845(c). The decision of the debarring official on debarment or suspension is...

  4. 42 CFR 93.523 - The Administrative Law Judge's ruling.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... accordance with 45 CFR 76.845(c). The decision of the debarring official on debarment or suspension is...

  5. 42 CFR 93.515 - Actions for violating an order or for disruptive conduct.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.515 Actions for violating an order or...

  6. 42 CFR 93.513 - Submission of witness lists, witness statements, and exhibits.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.513 Submission of witness...

  7. 42 CFR 93.101 - Purpose.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT General... Office of Research Integrity (ORI), and institutions in responding to research misconduct issues; (b) Define what constitutes misconduct in PHS supported research; (c) Define the general types...

  8. 42 CFR 93.516 - Standard and burden of proof.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative... findings of research misconduct. The destruction, absence of, or respondent's failure to provide research records adequately documenting the questioned research is evidence of research misconduct where...

  9. 42 CFR 93.101 - Purpose.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... HAZARDOUS SUBSTANCES RELEASES AND FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT General... Office of Research Integrity (ORI), and institutions in responding to research misconduct issues; (b) Define what constitutes misconduct in PHS supported research; (c) Define the general types...

  10. 42 CFR 93.25 - Organization of this part.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... RESEARCH MISCONDUCT § 93.25 Organization of this part. This part is subdivided into five subparts. Each... Research Integrity. E Information on how to contest ORI research misconduct findings and HHS...

  11. 42 CFR 93.514 - Amendment to the charge letter.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... findings of research misconduct up to 30 days before the scheduled hearing. (b) The ALJ may...

  12. 42 CFR 93.515 - Actions for violating an order or for disruptive conduct.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.515 Actions for violating an order or...

  13. 42 CFR 93.514 - Amendment to the charge letter.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... findings of research misconduct up to 30 days before the scheduled hearing. (b) The ALJ may...

  14. 42 CFR 93.523 - The Administrative Law Judge's ruling.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS... accordance with 45 CFR 76.845(c). The decision of the debarring official on debarment or suspension is...

  15. 42 CFR 93.513 - Submission of witness lists, witness statements, and exhibits.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... FACILITIES PUBLIC HEALTH SERVICE POLICIES ON RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative Actions Hearing Process § 93.513 Submission of witness...

  16. 42 CFR 93.516 - Standard and burden of proof.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... RESEARCH MISCONDUCT Opportunity To Contest ORI Findings of Research Misconduct and HHS Administrative... findings of research misconduct. The destruction, absence of, or respondent's failure to provide research records adequately documenting the questioned research is evidence of research misconduct where...

  17. Circumstellar grain formation

    NASA Technical Reports Server (NTRS)

    Draine, B. T.

    1986-01-01

    Dust formation around cool giant and supergiant stars is examined in terms of grain formulation. Optical properties of small clusters, molecular physics of cluster nucleation and growth, circumstellar mass flows, and their application to alpha Ori are discussed.

  18. A Comparative Study of Normalization Methods Used in Statistical Analysis of Oligonucleotide Microarray Data

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Normalization methods used in the statistical analysis of oligonucleotide microarray data were evaluated. The oligonucleotide microarray is considered an efficient analytical tool for analyzing thousands of genes simultaneously in a single experiment. However, systematic variation in microarray, ori...

  19. Morphofunctional changes of orofacial muscles in patients with unilateral or bilateral cleft lip, alveolus and palate.

    PubMed

    Proff, Peter; Weingärtner, Jens; Koppe, Thomas; Fanghänel, Jochen; Mack, Florian; Gedrange, Tomas

    2007-01-01

    The facial musculature is part of a biocybernetic feedback system within the stomatognathic system, the continuity of which is disturbed by clefts of the lip, jaw, and palate (cheilognathopalatoschisis). This results in topographic, fine-structural and functional alterations of the facial musculature. In two heads with unilateral clefts and two heads with bilateral clefts, the facial musculature was dissected and the M. orbicularis oris macroscopically and topographically examined. We found changes in the attachment of the M. orbicularis oris. The modiolus, which is coresponsible for the proper topographic relation of the M. obicularis oris to the other facial muscles, was unchanged. Further, we examined the vascular system of the muscle, which likewise adapts to the altered situation. Lip/jaw/palatal clefts result in anatomically functional and fine-structural alterations of the M. orbicularis oris, while the rest of the facial musculature remains unchanged. PMID:17419554

  20. Complainant issues in research misconduct: the office of research integrity experience.

    PubMed

    Pascal, Chris B

    2006-07-01

    This paper discusses the experiences of the Office of Research Integrity (ORI) with issues involving complainants who make allegations of research misconduct. The paper describes the legal framework for complainant issues, the various roles of the complainant as the allegation of misconduct proceeds through the steps of investigation and resolution, how allegations of retaliation against the complainant are handled, the responsibilities of ORI and of the research institution where the alleged misconduct occurred, and ORI's experience with several cases of alleged retaliation. In each of these areas, the paper attempts to provide guidance to prospective complainants, research institutions, and other interested persons on effective ways to approach the various problems and concerns that arise, while maintaining a balance between the needs of the complainant, the accused, the research institution handling the allegation, and ORI. PMID:16816133

  1. Access to regulatory data from the European Medicines Agency: the times they are a-changing.

    PubMed

    Wieseler, Beate; McGauran, Natalie; Kerekes, Michaela F; Kaiser, Thomas

    2012-01-01

    Systematic reviewers are increasingly trying to obtain regulatory clinical study reports (CSRs) to correct for publication bias. For instance, our organization, the Institute for Quality and Efficiency in Health Care, routinely asks drug manufacturers to provide full CSRs of studies considered in health technology assessments. However, since cooperation is voluntary, CSRs are available only for a subset of studies analysed. In the case of the inhaled insulin Exubera, the manufacturer refused to cooperate and in 2007 we asked the European Medicines Agency (EMA) to provide the relevant CSRs, but EMA denied access. Other researchers have reported similar experiences.In 2010 EMA introduced a new policy on access to regulatory documents, including CSRs, and has also undertaken further steps. The new policy has already borne fruit: in 2011, by providing additional sections of relevant CSRs, EMA made an important contribution to a review of oseltamivir (Tamiflu).Unfortunately, speedy implementation of the new policy may be endangered. We define a CSR following the International Conference on Harmonisation (ICH) E3 guideline. Although this guideline requires individual patient data listings, it does not necessarily require that these listings be made available in a computer-readable format, as proposed by some regulators from EMA and other agencies. However, access to raw data in a computer-readable format poses additional problems; merging this issue with that of access to CSRs could hamper the relatively simple implementation of the EMA policy. Moreover, EMA plans to release CSRs only on request; we suggest making these documents routinely available on the EMA website.Public access to regulatory data also carries potential risks. In our view, the issue of patient confidentiality has been largely resolved by current European legislation. The risk of other problems, such as conflicts of interest (CoIs) of independent researchers or quality issues can be reduced by

  2. The weak magnetic field of the O9.7 supergiant ζOrionisA

    NASA Astrophysics Data System (ADS)

    Bouret, J.-C.; Donati, J.-F.; Martins, F.; Escolano, C.; Marcolino, W.; Lanz, T.; Howarth, I. D.

    2008-09-01

    We report here the detection of a weak magnetic field of 50-100G on the O9.7 supergiant ζOrionisA (ζOriA), using spectropolarimetric observations obtained with NARVAL at the 2-m Télescope Bernard Lyot atop Pic du Midi (France). ζOriA is the third O star known to host a magnetic field (along with θ1OriC and HD191612), and the first detection on a `normal' rapidly rotating O star. The magnetic field of ζOriA is the weakest magnetic field ever detected on a massive star. The measured field is lower than the thermal equipartition limit (about 100G). By fitting non-local thermodynamic equilibrium (NLTE) model atmospheres to our spectra, we determined that ζOriA is a 40Msolar star with a radius of 25Rsolar and an age of about 5-6Myr, showing no surface nitrogen enhancement and losing mass at a rate of about 2 × 10-6Msolaryr-1. The magnetic topology of ζOriA is apparently more complex than a dipole and involves two main magnetic polarities located on both sides of the same hemisphere; our data also suggest that ζOriA rotates in about 7.0d and is about 40° away from pole-on to an Earth-based observer. Despite its weakness, the detected magnetic field significantly affects the wind structure; the corresponding Alfvén radius is however very close to the surface, thus generating a different rotational modulation in wind lines than that reported on the two other known magnetic O stars. The rapid rotation of ζOriA with respect to θ1OriC appears as a surprise, both stars having similar unsigned magnetic fluxes (once rescaled to the same radius); it may suggest that the subequipartition field detected on ζOriA is not a fossil remnant (as opposed to that of θ1 OriC and HD191612), but the result of an exotic dynamo action produced through magnetohydrodynamics (MHD) instabilities. Based on observations obtained at the Télescope Bernard Lyot (TBL), operated by the Institut National des Science de l'Univers of the Centre National de la Recherche Scientifique of France

  3. The Promises and Challenges of Ecological Momentary Assessment in Schizophrenia: Development of an Initial Experimental Protocol

    PubMed Central

    Gaudiano, Brandon A.; Moitra, Ethan; Ellenberg, Stacy; Armey, Michael F.

    2015-01-01

    Severe mental illnesses, including schizophrenia and other psychotic-spectrum disorders, are a major cause of disability worldwide. Although efficacious pharmacological and psychosocial interventions have been developed for treating patients with schizophrenia, relapse rates are high and long-term recovery remains elusive for many individuals. Furthermore, little is still known about the underlying mechanisms of these illnesses. Thus, there is an urgent need to better understand the contextual factors that contribute to psychosis so that they can be better targeted in future interventions. Ecological Momentary Assessment (EMA) is a dynamic procedure that permits the measurement of variables in natural settings in real-time through the use of brief assessments delivered via mobile electronic devices (i.e., smartphones). One advantage of EMA is that it is less subject to retrospective memory biases and highly sensitive to fluctuating environmental factors. In the current article, we describe the research-to-date using EMA to better understand fluctuating symptoms and functioning in patients with schizophrenia and other psychotic disorders and potential applications to treatment. In addition, we describe a novel EMA protocol that we have been employing to study the outcomes of patients with schizophrenia following a hospital discharge. We also report the lessons we have learned thus far using EMA methods in this challenging clinical population. PMID:26689969

  4. Fundamental comparison of time-domain experimental modal analysis methods based on high- and first-order matrix models

    NASA Astrophysics Data System (ADS)

    Hu, Sau-Lon James; Yang, Wen-Long; Liu, Fu-Shun; Li, Hua-Jun

    2014-12-01

    All time-domain methods for experimental modal analysis (EMA) begin with a mathematical model. Based on either a high-order matrix polynomial model or a first-order state-space model, this paper emphasizes the comparison of numerical conditioning and stability, as well as the modal parameter estimation, among EMA methods. Numerical conditioning pertains to the perturbation behavior of a mathematical problem (model) itself and stability pertains to the perturbation behavior of an algorithm used to solve that problem on a computer. As various EMA methods are modeled differently with distinct solution algorithms, implementing these methods would have different conditioning and stability. In this paper, both deterministic and stochastic EMA methods are covered. Three different scenarios for the response signal are considered: (1) clean response from impulse loading, (2) noisy response from impulse loading, and (3) noisy response from ambient noise excitation. Comparing the numerical conditioning of various EMA methods, this paper theoretically illustrates that methods based on first-order state-space models are more likely to be well-conditioned (with a smaller conditioning number) than those based on high-order polynomial models. Furthermore, the numerical observation of a case study for a 6 degree-of-freedom system also suggests that first-order state-space model methods are more robust and accurate for the estimation of modal frequency and damping.

  5. Applicability of the effective-medium approximation to heterogeneous aerosol particles

    NASA Astrophysics Data System (ADS)

    Mishchenko, Michael I.; Dlugach, Janna M.; Liu, Li

    2016-07-01

    The effective-medium approximation (EMA) is based on the assumption that a heterogeneous particle can have a homogeneous counterpart possessing similar scattering and absorption properties. We analyze the numerical accuracy of the EMA by comparing superposition T-matrix computations for spherical aerosol particles filled with numerous randomly distributed small inclusions and Lorenz-Mie computations based on the Maxwell-Garnett mixing rule. We verify numerically that the EMA can indeed be realized for inclusion size parameters smaller than a threshold value. The threshold size parameter depends on the refractive-index contrast between the host and inclusion materials and quite often does not exceed several tenths, especially in calculations of the scattering matrix and the absorption cross section. As the inclusion size parameter approaches the threshold value, the scattering-matrix errors of the EMA start to grow with increasing the host size parameter and/or the number of inclusions. We confirm, in particular, the existence of the effective-medium regime in the important case of dust aerosols with hematite or air-bubble inclusions, but then the large refractive-index contrast necessitates inclusion size parameters of the order of a few tenths. Irrespective of the highly restricted conditions of applicability of the EMA, our results provide further evidence that the effective-medium regime must be a direct corollary of the macroscopic Maxwell equations under specific assumptions.

  6. Use of pupil size to determine the effect of electromagnetic acupuncture on activation level of the autonomic nervous system.

    PubMed

    Kim, Soo-Byeong; Choi, Woo-Hyuk; Liu, Wen-Xue; Lee, Na-Ra; Shin, Tae-Min; Lee, Yong-Heum

    2014-06-01

    Magnetic fields are widely considered as a method of treatment to increase the therapeutic effect when applied to acupoints. Hence, this study proposes a new method which creates significant stimulation of acupoints by using weak magnetic fields. We conducted this experiment in order to confirm the effect on the activation level of the autonomic nervous system by measuring pupil sizes in cases of stimulation by using manual acupuncture and electromagnetic acupuncture (EMA) at BL15. We selected 30 Hz of biphasic wave form with 570.1 Gauss. To confirm the biopotential by the magnetic flux density occurring in EMA that affected the activation of the autonomic nervous system, we observed the biopotential induced at the upper and the mid left and right trapezius. We observed a significant decrease in pupil size only in the EMA group (p < 0.05), thus confirming that EMA decreased the pupil size through activation of the parasympathetic nerve in the autonomic nervous system. Moreover, we confirmed that the amplitude of the biopotential which was caused by 570.1 Gauss was higher than ±20 μA. Thus, we can conclude that EMA treatment successfully activates the parasympathetic nerve in the autonomic nervous system by inducing a biotransformation by the induced biopotential. PMID:24929456

  7. Conceptualizing and Estimating Process Speed in Studies Employing Ecological Momentary Assessment Designs: A Multilevel Variance Decomposition Approach

    PubMed Central

    Shiyko, Mariya P.; Ram, Nilam

    2012-01-01

    Researchers have been making use of ecological momentary assessment (EMA) and other study designs that sample feelings and behaviors in real time and in naturalistic settings to study temporal dynamics and contextual factors of a wide variety of psychological, physiological, and behavioral processes. As EMA designs become more widespread, questions are arising about the frequency of data sampling, with direct implications for participants’ burden and researchers’ ability to capture and study dynamic processes. Traditionally, spectral analytic techniques are used for time series data to identify process speed. However, the nature of EMA data, often collected with fewer than 100 measurements per person, sampled at randomly spaced intervals, and replete with planned and unplanned missingness, precludes application of traditional spectral analytic techniques. Building on principles of variance partitioning used in the generalizability theory of measurement and spectral analysis, we illustrate the utility of multilevel variance decompositions for isolating process speed in EMA-type data. Simulation and empirical data from a smoking-cessation study are used to demonstrate the method and to evaluate the process speed of smoking urges and quitting self-efficacy. Results of the multilevel variance decomposition approach can inform process-oriented theory and future EMA study designs. PMID:22707796

  8. New methods for unmixing sediment grain size data

    NASA Astrophysics Data System (ADS)

    Paterson, Greig A.; Heslop, David

    2015-12-01

    Grain size distribution (GSD) data are widely used in Earth sciences and although large data sets are regularly generated, detailed numerical analyses are not routine. Unmixing GSDs into components can help understand sediment provenance and depositional regimes/processes. End-member analysis (EMA), which fits one set of end-members to a given data set, is a powerful way to unmix GSDs into geologically meaningful parts. EMA estimates end-members based on covariability within a data set and can be considered as a nonparametric approach. Available EMA algorithms, however, either produce suboptimal solutions or are time consuming. We introduce unmixing algorithms inspired by hyperspectral image analysis that can be applied to GSD data and which provide an improvement over current techniques. Nonparametric EMA is often unable to identify unimodal grain size subpopulations that correspond to single sediment sources. An alternative approach is single-specimen unmixing (SSU), which unmixes individual GSDs into unimodal parametric distributions (e.g., lognormal). We demonstrate that the inherent nonuniqueness of SSU solutions renders this approach unviable for estimating underlying mixing processes. To overcome this, we develop a new algorithm to perform parametric EMA, whereby an entire data set can be unmixed into unimodal parametric end-members (e.g., Weibull distributions). This makes it easier to identify individual grain size subpopulations in highly mixed data sets. To aid investigators in applying these methods, all of the new algorithms are available in AnalySize, which is GUI software for processing and unmixing grain size data.

  9. International Society for Quality of Life Research commentary on the draft European Medicines Agency reflection paper on the use of patient-reported outcome (PRO) measures in oncology studies.

    PubMed

    Kyte, Derek; Reeve, Bryce B; Efficace, Fabio; Haywood, Kirstie; Mercieca-Bebber, Rebecca; King, Madeleine T; Norquist, Josephine M; Lenderking, William R; Snyder, Claire; Ring, Lena; Velikova, Galina; Calvert, Melanie

    2016-02-01

    In 2014, the European Medicines Agency (EMA) released for comment a draft reflection paper on the use of patient-reported outcome (PRO) measures in oncology studies. A twelve-member International Society for Quality of Life Research (ISOQOL) taskforce was convened to coordinate the ISOQOL response. Twenty-one ISOQOL members provided detailed comments and suggestions on the paper: 81 % from academia and 19 % from industry. Taskforce members consolidated and further refined these comments and shared the recommendations with the wider ISOQOL membership. A final response was submitted to the EMA in November 2014. The impending publication of the EMA reflection paper presents a valuable opportunity for ISOQOL to comment on the current direction of EMA PRO guidance and strategy. The EMA paper, although focused on cancer, could serve as a model for using PROs in other conditions, as it provides a useful update surrounding some of the design issues common to all trial research including PRO endpoints. However, we believe there are a number of additional areas in need of greater consideration. The purpose of this commentary is therefore to highlight the strengths of this timely and potentially useful document, but also to outline areas that may warrant further discussion. PMID:26275979

  10. Ecological Momentary Assessment and Alcohol Use Disorder Treatment

    PubMed Central

    Morgenstern, Jon; Kuerbis, Alexis; Muench, Frederick

    2014-01-01

    The ability to capture real-time data on human behavior inexpensively, efficiently, and accurately holds promise to transform and broaden our understanding of many areas of health science. One approach to acquiring this type of real-time data is ecological momentary assessment (EMA). This method has been used to collect data in many domains of addiction research, including research on the treatment of alcohol use disorders (AUDs). Empirical evidence supports the hypothesis that use of EMA can improve the quality of AUD treatment research when compared with standard assessment methods because it provides more accurate reporting, allows investigators to examine the dynamic unfolding of the behavior change process at an individual level, and can be used to augment and improve clinical assessment and treatment. Overall, the existing literature provides strong support for the advantages of EMA when combined with standard assessment of addictive behaviors in general. Nevertheless, use of EMA in AUD treatment research thus far has been limited, especially in the area of research on mechanisms of behavior change. Existing research indicates, however, that EMA can be used to deliver tailored feedback as a novel and potentially transformative approach to improving AUD treatment. This research area clearly warrants additional future efforts. PMID:26259004

  11. A comparison of retrospective self-report versus ecological momentary assessment measures of affective lability in the examination of its relationship with bulimic symptomatology

    PubMed Central

    Anestis, Michael D.; Selby, Edward A.; Crosby, Ross D.; Wonderlich, Stephen A.; Engel, Scott G.; Joiner, Thomas E.

    2010-01-01

    Affective lability has been linked to several maladaptive behaviors (Anestis et al., 2009; Coccaro, 1991). Methodology for measuring affective lability varies and includes retrospective self-report and ecological momentary assessment (EMA). In this study, we sought to test these methodologies by examining which better predicted binge eating episodes and general eating disorder symptoms in a sample (n = 131) of women diagnosed with bulimia nervosa (BN). We hypothesized that, while the two forms of measurement would be correlated with one another and predict binge eating episodes, EMA affective lability would be the stronger predictor. Results supported several hypotheses. Specifically, both EMA affective lability and retrospective self-report affective lability significantly predicted global eating disorder symptoms, even when controlling for depression, age, body mass index, and level of education, EMA affective lability exhibited a significantly stronger correlation with binge eating episodes than did retrospective self-report affective lability, and EMA affective lability predicted number of binge eating episodes on any given day controlling for the same list of covariates. Limitations include the use of a clinical sample that may limit the generalizability of our findings. Findings highlight the importance of affect in such behavior. PMID:20392437

  12. Proposed premium diesel fuel spec elicits calls for tougher, better defined parameters

    SciTech Connect

    Peckham, J.

    1998-01-01

    The debate over the definition of premium diesel fuel - what it is and what it should be - is heating up in industry circles. A number of automotive associations, additive makers and standards-setting organizations have jumped into the fray, and the fight is likely to turn volcanic when it comes down to deciding exactly what will constitute a premium diesel and how its properties will be measured. This story details some recent developments in and responses to the ongoing conflict. The Engine Manufacturers Association (EMA), representing 33 international diesel engine makers, recently launched a survey of U.S. diesel fuel marketers to see which ones will offer a fuel meeting EMA`s revised {open_quotes}FQP-1A{close_quotes} premium diesel fuel recommendations. Following the survey, EMA intends to publicize which companies offer such a fuel. The EMA premium fuel specifications are much tougher than the US standard ASTM D 975 fuel and tougher than the newly proposed {open_quotes}premium{close_quotes} diesel fuel from the National Conference of Weights & Measures (NCWM) task force. Earlier this year, Amoco became the first (and so far only) US refiner to offer a fuel meeting all the FQP specifications, but only in certain Midwest markets.

  13. In vivo oxalate degradation by liposome encapsulated oxalate oxidase in rat model of hyperoxaluria

    PubMed Central

    Dahiya, Tulika; Pundir, C.S.

    2013-01-01

    Background & objectives: High level of urinary oxalate substantially increases the risk of hyperoxaluria, a significant risk factor for urolithiasis. The primary goal of this study was to reduce urinary oxalate excretion employing liposome encapsulated oxalate oxidase in animal model. Methods: A membrane bound oxalate oxidase was purified from Bougainvillea leaves. The enzyme in its native form was less effective at the physiological pH of the recipient animal. To increase its functional viability, the enzyme was immobilized on to ethylene maleic anhydride (EMA). Rats were injected with liposome encapsulated EMA- oxalate oxidase and the effect was observed on degradation of oxalic acid. Results: The enzyme was purified to apparent homogeneity with 60-fold purification and 31 per cent yield. The optimum pH of EMA-derivative enzyme was 6.0 and it showed 70 per cent of its optimal activity at pH 7.0. The EMA-bound enzyme encapsulated into liposome showed greater oxalate degradation in 15 per cent casein vitamin B6 deficient fed rats as compared with 30 per cent casein vitamin B6 deficient fed rats and control rats. Interpretation & conclusions: EMA-oxalate oxidase encapsulated liposome caused oxalate degradation in experimental hyperoxaluria indicating that the enzyme could be used as a therapeutic agent in hyperoxaluria leading to urinary stones. PMID:23481063

  14. A comparison of retrospective self-report versus ecological momentary assessment measures of affective lability in the examination of its relationship with bulimic symptomatology.

    PubMed

    Anestis, Michael D; Selby, Edward A; Crosby, Ross D; Wonderlich, Stephen A; Engel, Scott G; Joiner, Thomas E

    2010-07-01

    Affective lability has been linked to several maladaptive behaviors (Anestis et al., 2009; Coccaro, 1991). Methodology for measuring affective lability varies and includes retrospective self-report and ecological momentary assessment (EMA). In this study, we sought to test these methodologies by examining which better predicted binge eating episodes and general eating disorder symptoms in a sample (n = 131) of women diagnosed with bulimia nervosa (BN). We hypothesized that, while the two forms of measurement would be correlated with one another and predict binge eating episodes, EMA affective lability would be the stronger predictor. Results supported several hypotheses. Specifically, both EMA affective lability and retrospective self-report affective lability significantly predicted global eating disorder symptoms, even when controlling for depression, age, body mass index, and level of education, EMA affective lability exhibited a significantly stronger correlation with binge eating episodes than did retrospective self-report affective lability, and EMA affective lability predicted number of binge eating episodes on any given day controlling for the same list of covariates. Limitations include the use of a clinical sample that may limit the generalizability of our findings. Findings highlight the importance of affect in such behavior. PMID:20392437

  15. Use of ethidium monoazide and propidium monoazide to determine viral infectivity upon inactivation by heat, UV- exposure and chlorine.

    PubMed

    Leifels, Mats; Jurzik, Lars; Wilhelm, Michael; Hamza, Ibrahim Ahmed

    2015-11-01

    Despite the great sensitivity of PCR in monitoring enteric viruses in an aquatic environment, PCR detects viral nucleic acids of both infectious and noninfectious viruses, limiting the conclusions regarding significance for public health. Ethidium monoazide (EMA) and propidium monoazide (PMA) are closely related membrane impermeant dyes that selectively penetrate cells with compromised membranes. Inside the cells, the dye can intercalate into nucleic acids and inhibit PCR amplification. To assess whether EMA and PMA pretreatment is a suitable approach to inhibit DNA amplification from noninfectious viruses upon heat treatment, UV exposure or chlorine treatment, viruses were measured by qPCR, EMA-qPCR, PMA-qPCR and cell culture titration. EMA/PMA-qPCR of UV- and heat-treated viruses did not correlate with the results of the cell culture assay. However, the data from EMA/PMA-qPCR of chlorine-inactivated viruses was consistent with the cell culture infectivity assay. Therefore, a dye treatment approach could be a rapid and inexpensive tool to screen the efficacy of chlorine disinfection, but it is not able to distinguish between infectious and noninfectious viruses inactivated via heat treatment or UV irradiation. Indeed, different viruses may have different trends and mechanisms of inactivation; thus, the assay must be evaluated for each virus separately. PMID:25747544

  16. Optical inhomogeneity of dust-like aerosols and its effects on scattering and absorption

    NASA Astrophysics Data System (ADS)

    Mishchenko, M. I.; Dlugach, Z.; Liu, L.

    2015-12-01

    The use of the very concept of effective refractive index has been implicit in virtually all computations of electromagnetic scattering by dust-like aerosols since the nanometer-scale heterogeneity of such particles has been essentially ignored. Therefore, the failure of this concept in application to dust-like aerosols would create a highly problematic situation. It is thus imperative to perform a comprehensive analysis of the actual physical origin of the heuristic effective-medium approximations (EMAs) and the range and conditions of their practical applicability. In this talk, we will identify the true place of the EMAs in the framework of statistical electrodynamics. We will validate the outcome of this analysis by superposition T-matrix computer calculations and will perform a detailed quantitative assessment of the actual accuracy of the EMAs when they are applied to less-than-ideal types of heterogeneity encountered in nature. It is expected that the accuracy of an EMA will depend on many factors: on type of mixing; on refractive indices and size parameters of the host and the inclusions; on number, spatial distribution, and packing density of the inclusions; on whether one computes monodisperse or polydisperse optical characteristics; on whether one computes only integral radiometric characteristics or also the elements of the scattering matrix; etc. If so, the actual practical suitability of an EMA will vary widely depending on the specific type of application, e.g., lidar remote sensing, polarimetric remote sensing, radiometric remote sensing, or integral radiation-budget computations.

  17. Stars of type MS with evidence of white dwarf companions. [IUE, Main Sequence (MS)

    NASA Technical Reports Server (NTRS)

    Peery, Benjamin F., Jr.

    1986-01-01

    A search for white dwarf companions of MS-type stars was conducted, using IUE. The overendowments of these stars in typical S-process nuclides suggest that they, like the Ba II stars, may owe their peculiar compositions to earlier mass transfer. Short-wavelength IUE spectra show striking emission line variability in HD35155, HD61913, and 4 Ori; HD35155 and 4 Ori show evidence of white dwarf companions.

  18. Explorer : des clés pour mieux comprendre la matière

    SciTech Connect

    2011-02-14

    Le LHC va-t-il bouleverser les théories de l'infiniment petit ? Les physiciens aimeraient que l'accélérateur fasse trembler le modèle standard. Cette théorie des particules élémentaires et des forces laisse de nombreuses zones d'ombre. Le LHC et ses expériences ont été conçus pour les éclairer.

  19. Macronutrient intake in advanced age: Te Puāwaitanga o Ngā Tapuwae Kia ora Tonu, Life and Living in Advanced Age: A Cohort Study in New Zealand (LiLACS NZ).

    PubMed

    Wham, Carol; Teh, Ruth; Moyes, Simon A; Rolleston, Anna; Muru-Lanning, Marama; Hayman, Karen; Adamson, Ashley; Kerse, Ngaire

    2016-09-01

    As part of the 12-month follow-up of the longitudinal cohort study, Life and Living in Advanced Age: A Cohort Study in New Zealand, dietary intake was assessed in 216 Māori and 362 non-Māori octogenarians using repeat 24-h multiple pass recalls. Energy and macronutrient intakes were calculated, and food items reported were allocated to food groups used in the New Zealand Adult Nutrition Survey (NZANS). Intakes were compared with the nutrient reference values (NRV) for Australia and New Zealand. The median BMI was higher for Māori (28·3 kg/m2) than for non-Māori (26·2 kg/m2) P=0·007. For Māori, median energy intake was 7·44 MJ/d for men and 6·06 MJ/d for women with 16·3 % energy derived from protein, 43·3 % from carbohydrate and 38·5 % from fat. Median energy intake was 7·91 and 6·26 MJ/d for non-Māori men and women, respectively, with 15·4 % of energy derived from protein, 45 % from carbohydrate and 36·7 % from fat. For both ethnic groups, bread was the top contributor to energy and carbohydrate intakes. Protein came from beef and veal, fish and seafood, bread, milk and poultry with the order differing by ethnic groups and sex. Fat came mainly from butter and margarine. Energy-adjusted protein was higher for Māori than non-Māori (P=0·049). For both ethnic groups, the median energy levels were similar, percent carbohydrate tended to be lower and percent fat higher compared with adults aged >70 years in NZANS. These unique cross-sectional data address an important gap in our understanding of dietary intake in this growing section of our population and highlight lack of age-appropriate NRV. PMID:27546175

  20. Effectiveness of γ-oryzanol in reducing neuromotor deficits, dopamine depletion and oxidative stress in a Drosophila melanogaster model of Parkinson's disease induced by rotenone.

    PubMed

    Araujo, Stífani Machado; de Paula, Mariane Trindade; Poetini, Marcia Rósula; Meichtry, Luana; Bortolotto, Vandreza Cardoso; Zarzecki, Micheli Stefani; Jesse, Cristiano Ricardo; Prigol, Marina

    2015-12-01

    The γ-orizanol present in rice bran oil contains a mix of steryl triterpenyl esters of ferulic acid, which is believed to be linked to its antioxidant potential. In this study we investigated the neuroprotective actions of γ-orizanol (ORY) against the toxicity induced by rotenone (ROT) in Drosophila melanogaster. The flies (both genders) aged between 1 and 5 days old were divided into four groups of 50 flies each: (1) control, (2) ORY 25 μM, (3) ROT 500 μM, (4) ORY 25 μM+ROT 500 μM. Flies were concomitantly exposed to a diet containing ROT and ORY for 7 days according to their respective groups. Survival and behavior analyses were carried out in vivo, and ex vivo analyses involved acetylcholinesterase activity (AChE), determination of dopaminergic levels, cellular viability and mitochondrial viability, activities of superoxide dismutase (SOD), catalase (CAT), glutathione-S-transferase (GST), reactive species levels (RS), lipid peroxidation (TBARS) and contents of total thiols and non-proteic thiols (NPSH). Our results show for the first time that ORY not only acts as an endogenous activator of the cellular antioxidant defenses, but it also ameliorates rotenone induced mortality, oxidative stress and mitochondrial dysfunction. Our salient findings regarded the restoration of cholinergic deficits, dopamine levels and improved motor function provided by ORY. These results demonstrate the neuroprotective potential of ORY and that this effect can be potentially due to its antioxidant action. In conclusion, the present results show that ORY is effective in reducing the ROT induced toxicity in D. melanogaster, which showed a neuroprotective action, possibly due to the presence of the antioxidant constituents such as the ferulic acid. PMID:26366809