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Sample records for emissions database gfed

  1. Global Fire Emissions Database version 4 (GFED4)

    NASA Astrophysics Data System (ADS)

    van der Werf, G.; Randerson, J. T.; Giglio, L.; Chen, Y.; Rogers, B. M.; Van Leeuwen, T. T.

    2014-12-01

    We present the fourth generation of our Global Fire Emissions Database (GFED4). Burned area was derived from satellite-based 500-meter maps (MODIS MCD64A1 burned area product) for the MODIS era and relations with active fire detections from the VIRS and ATSR sensors for the pre-MODIS era as described in the GFED4 burned area dataset. In addition, we added new estimates of contributions in burned area from relatively small fires that were detected by active fire algorithms but not the MCD64A1 product. Modeled fuel consumption was optimized in the modeling framework by adjusting turnover rates and compared reasonably well with measurements at the biome-level. However, discrepancies are still substantial in some biomes, highlighting the difficulty in representing fuel dynamics. For the boreal biome, we used new satellite-derived information to inform combustion completeness and fire-induced tree mortality. In general, fuel consumption (kg C m-2 of burned area) decreased compared to GFED3, especially in regions dominated by herbaceous fuels. This is compensated for by the higher burned area estimates due to the addition of small fire burned area. However, these small fires are difficult to validate at large scales, which adds to our uncertainty. In regions where small fires may play a large role, including the US, Central America, Europe, and parts of Southeast Asia, emissions have increased substantially and are now sometimes twice as high as GFED3 estimates. Global mean annual emissions over 1997-2013 were 2.1 Pg C, 350 Tg CO, and 16 Tg CH4; in general somewhat higher than GFED3 because increases in burned area were larger than decreases in fuel consumption. Interannual variability was especially large in the first years of our record with high emissions in 1997 and 1998 (3.0 and 2.7 Pg C, respectively), while the lowest year in our record was 2000 (1.8 Pg C). Emissions were also relatively low during the latter part of the record with decreasing emissions from fires associated with tropical deforestation and with socio-economic developments in northern hemisphere Africa. Interannual variability was still substantial after 2000 in many regions, especially those with high forest cover, but these regions tended to cancel each other out on a global scale; emissions remained between 1.8 and 2.3 Pg C per year after 2000.

  2. The improved Global Fire Emissions Database (GFED) version 3: contribution of savanna, forest, deforestation, and peat fires to the global fire emissions budget

    NASA Astrophysics Data System (ADS)

    van der Werf, Guido; Randerson, Jim; Giglio, Louis; Collatz, Jim; Kasibhatla, Prasad; Morton, Doug; Defries, Ruth

    2010-05-01

    Global fire activity is an important contributor to the atmospheric trace gas and aerosol burdens. New burned area datasets and top-down constraints from atmospheric concentration measurements of pyrogenic gases have decreased the large uncertainty in fire emissions estimates, but little is known about the contribution of deforestation, agricultural waste, peat, forest, and savanna fires to total global fire emissions. Here we used a revised version of the CASA biogeochemical model and improved satellite-derived estimates of area burned, fire activity, and plant productivity to calculate fire emissions for the 1997-2008 period on a 0.5°×0.5° spatial resolution with a monthly time step. For November 2000 onwards, estimates were based on burned area, active fire detections, and plant productivity from the MODIS sensor. For this time period we also calculated the breakdown of emissions into different sources. We used TRMM-VIRS and ATSR data to extend our fire time series back in time, combined with AVHRR-derived plant productivity in the pre-MODIS era. Average global fire carbon emissions were 1.9 Pg C / year with significant interannual variability over 1997-2001 (2.6 Pg C / year in 1998 and 1.5 Pg C / year in 2001) while emissions over 2002-2007 were relatively constant (varying between 1.9 and 2.0 Pg C / year), before declining in 2008 (1.6 Pg C / year). Over 2002-2007, interannual variability was still large on regional scales but on a global scale high fire years in some regions were balanced by low fire years in other regions. In the MODIS era (2001 onwards), most carbon losses were the result of fires in (wooded) savannas (68%) with lower contributions from deforestation (13%), forest (12%), agricultural waste (4%), and tropical peat fires (3%). On regional scales, these contributions vary to a large degree, and the contribution of peat fires would increase when including the 1997/1998 El Niño period with record-high fire emissions in Equatorial Asia. For reduced trace gases such as CO and CH4, deforestation and peat fires were the largest contributors due to higher emissions of reduced trace gases per unit carbon combusted compared to savanna fires. Net fire carbon losses (tropical deforestation and peat fires) were on average 0.3 Pg C / year, which is likely a conservative estimate because our deforestation rates were lower than reported. Our results provide the first global assessment of the contribution of different sources to total global fire emissions for the past 13 years, and provide the community with more reliable fire emissions estimates that will be updated frequently.

  3. Direct Top-down Estimates of Biomass Burning CO Emissions Using TES and MOPITT Versus Bottom-up GFED Inventory

    NASA Technical Reports Server (NTRS)

    Pechony, Olga; Shindell, Drew T.; Faluvegi, Greg

    2013-01-01

    In this study, we utilize near-simultaneous observations from two sets of multiple satellite sensors to segregate Tropospheric Emission Spectrometer (TES) and Measurements of Pollution in the Troposphere (MOPITT) CO observations over active fire sources from those made over clear background. Hence, we obtain direct estimates of biomass burning CO emissions without invoking inverse modeling as in traditional top-down methods. We find considerable differences between Global Fire Emissions Database (GFED) versions 2.1 and 3.1 and satellite-based emission estimates in many regions. Both inventories appear to greatly underestimate South and Southeast Asia emissions, for example. On global scales, however, CO emissions in both inventories and in the MOPITT-based analysis agree reasonably well, with the largest bias (30%) found in the Northern Hemisphere spring. In the Southern Hemisphere, there is a one-month shift between the GFED and MOPITT-based fire emissions peak. Afternoon tropical fire emissions retrieved from TES are about two times higher than the morning MOPITT retrievals. This appears to be both a real difference due to the diurnal fire activity variations, and a bias due to the scarcity of TES data.

  4. Comparison of GFED3, QFED2 and FEER1 Biomass Burning Emissions Datasets in a Global Model

    NASA Technical Reports Server (NTRS)

    Pan, Xiaohua; Ichoku, Charles; Bian, Huisheng; Chin, Mian; Ellison, Luke; da Silva, Arlindo; Darmenov, Anton

    2015-01-01

    Biomass burning contributes about 40% of the global loading of carbonaceous aerosols, significantly affecting air quality and the climate system by modulating solar radiation and cloud properties. However, fire emissions are poorly constrained in models on global and regional levels. In this study, we investigate 3 global biomass burning emission datasets in NASA GEOS5, namely: (1) GFEDv3.1 (Global Fire Emissions Database version 3.1); (2) QFEDv2.4 (Quick Fire Emissions Dataset version 2.4); (3) FEERv1 (Fire Energetics and Emissions Research version 1.0). The simulated aerosol optical depth (AOD), absorption AOD (AAOD), angstrom exponent and surface concentrations of aerosol plumes dominated by fire emissions are evaluated and compared to MODIS, OMI, AERONET, and IMPROVE data over different regions. In general, the spatial patterns of biomass burning emissions from these inventories are similar, although the strength of the emissions can be noticeably different. The emissions estimates from QFED are generally larger than those of FEER, which are in turn larger than those of GFED. AOD simulated with all these 3 databases are lower than the corresponding observations in Southern Africa and South America, two of the major biomass burning regions in the world.

  5. The Berlin Emissivity Database

    NASA Astrophysics Data System (ADS)

    Helbert, Jorn

    Remote sensing infrared spectroscopy is the principal field of investigation for planetary surfaces composition. Past, present and future missions to the solar system bodies include in their payload instruments measuring the emerging radiation in the infrared range. TES on Mars Global Surveyor and THEMIS on Mars Odyssey have in many ways changed our views of Mars. The PFS instrument on the ESA Mars Express mission has collected spectra since the beginning of 2004. In spring 2006 the VIRTIS experiment started its operation on the ESA Venus Express mission, allowing for the first time to map the surface of Venus using the 1 µm emission from the surface. The MERTIS spectrometer is included in the payload of the ESA BepiColombo mission to Mercury, scheduled for 2013. For the interpretation of the measured data an emissivity spectral library of planetary analogue materials is needed. The Berlin Emissivity Database (BED) presented here is focused on relatively fine-grained size separates, providing a realistic basis for interpretation of thermal emission spectra of planetary regoliths. The BED is therefore complimentary to existing thermal emission libraries, like the ASU library for example. The BED contains currently entries for plagioclase and potassium feldspars, low Ca and high Ca pyroxenes, olivine, elemental sulphur, common martian analogues (JSC Mars-1, Salten Skov, palagonites, montmorillonite) and a lunar highland soil sample measured in the wavelength range from 3 to 50 µm as a function of particle size. For each sample, the spectra of four well defined particle size separates (¡25 µm , 25-63 µm, 63-125 µm, 125-250 µm) are measured with a 4 cm-1 spectral resolution. These size separates have been selected as typical representations for most of the planetary surfaces. Following an ongoing upgrade of the Planetary Emmissivity Laboratory (PEL) at DLR in Berlin measurements can be obtained at temperatures up to 500° C - realistic for the dayside conditions of Mercury. This upgrade will also extend the spectral coverage down to 1 µm. The capability to measure emissivity for fine grained samples on a large spectral range and for very high temperatures makes the PEL a unique facility. It allows for example for the first time obtaining directly emissivity measurements in this spectral range which is crucial for example for the surface observations of Venus from orbit through the atmospheric windows.

  6. GLOBAL EMISSIONS DATABASE (GLOED) DEMONSTRATION

    EPA Science Inventory

    The paper describes the EPA-developed Global Emissions Database (GloED) and how it works. t was prepared to accompany a demonstration of GloED, a powerful software package. loED is a user-friendly, menu-driven tool for storing and retriEving emissions factors and activity data on...

  7. Stratospheric emissions effects database development

    SciTech Connect

    Baughcum, S.L.; Henderson, S.C.; Hertel, P.S.; Maggiora, D.R.; Oncina, C.A.

    1994-07-01

    This report describes the development of a stratospheric emissions effects database (SEED) of aircraft fuel burn and emissions from projected Year 2015 subsonic aircraft fleets and from projected fleets of high-speed civil transports (HSCT's). This report also describes the development of a similar database of emissions from Year 1990 scheduled commercial passenger airline and air cargo traffic. The objective of this work was to initiate, develop, and maintain an engineering database for use by atmospheric scientists conducting the Atmospheric Effects of Stratospheric Aircraft (AESA) modeling studies. Fuel burn and emissions of nitrogen oxides (NO(x) as NO2), carbon monoxide, and hydrocarbons (as CH4) have been calculated on a 1-degree latitude x 1-degree longitude x 1-kilometer altitude grid and delivered to NASA as electronic files. This report describes the assumptions and methodology for the calculations and summarizes the results of these calculations.

  8. Stratospheric emissions effects database development

    NASA Technical Reports Server (NTRS)

    Baughcum, Steven L.; Henderson, Stephen C.; Hertel, Peter S.; Maggiora, Debra R.; Oncina, Carlos A.

    1994-01-01

    This report describes the development of a stratospheric emissions effects database (SEED) of aircraft fuel burn and emissions from projected Year 2015 subsonic aircraft fleets and from projected fleets of high-speed civil transports (HSCT's). This report also describes the development of a similar database of emissions from Year 1990 scheduled commercial passenger airline and air cargo traffic. The objective of this work was to initiate, develop, and maintain an engineering database for use by atmospheric scientists conducting the Atmospheric Effects of Stratospheric Aircraft (AESA) modeling studies. Fuel burn and emissions of nitrogen oxides (NO(x) as NO2), carbon monoxide, and hydrocarbons (as CH4) have been calculated on a 1-degree latitude x 1-degree longitude x 1-kilometer altitude grid and delivered to NASA as electronic files. This report describes the assumptions and methodology for the calculations and summarizes the results of these calculations.

  9. Emission Database for Global Atmospheric Research (EDGAR).

    ERIC Educational Resources Information Center

    Olivier, J. G. J.; And Others

    1994-01-01

    Presents the objective and methodology chosen for the construction of a global emissions source database called EDGAR and the structural design of the database system. The database estimates on a regional and grid basis, 1990 annual emissions of greenhouse gases, and of ozone depleting compounds from all known sources. (LZ)

  10. Emission database for global atmospheric research (Edgar).

    PubMed

    Olivier, J G; Bouwman, A F; van der Maas, C W; Berdowski, J J

    1994-05-01

    Atmospheric chemistry and climate modellers require gridded global emissions data as input into their models. To meet this urgent need a global emissions source database called EDGAR is being developed by TNO and RIVM to estimate for 1990, on a regional and on a grid basis, annual emissions of greenhouse gases (CO2, CH4, N2O, CO, NOx, non-methane VOC, SOx), of NH3, and of ozone depleting compounds (halocarbons) from all known sources. The aim is to establish at due levels of spatial, temporal and source aggregation the emissions from both anthropogenic and biogenic sources: a complete set of data required to estimate the total source strength of the various gases with a 1×1 ° resolution (altitude resolution of 1 km) and a temporal resolution of a month, supplemented by diurnal variation, as agreed upon in the Global Emissions Inventory Activity (GEIA) of the International Atmospheric Chemistry Programme (IGAC). In this way EDGAR will meet the requirements of present and future developments in the field of atmospheric modelling. The data comprise demographic data, social and economic factors, land use distributions and emission factors (with due emphasis on the uncertainty). As understanding in this field is still changing, due attention is paid to flexibility regarding the disaggregation of sources, spatial and temporal resolution and species. The objective and methodology chosen for the construction of the database and the structural design of the database system are presented, as well as the type and sources of data and the approach used for data collection. As an example, the construction of the N2O inventory is discussed. PMID:24213893

  11. CHIANTI - an atomic database for emission lines

    NASA Astrophysics Data System (ADS)

    Dere, K. P.; Landi, E.; Mason, H. E.; Monsignori Fossi, B. C.; Young, P. R.

    1997-10-01

    A comprehensive set of accurate atomic data is required for analyses of astrophysical and solar spectra. CHIANTI provides a database of atomic energy levels, wavelengths, radiative data and electron excitation data for ions which are abundant in cosmic plasmas. The most recent electron excitation data have been assessed and stored following the method of \\cite[Burgess \\& Tully (1992)]{bur92}. The current version is essentially complete for specifying the emission spectrum at wavelengths greater than 50 Angstroms. A list of observed lines in the spectral region between 50 and 1100 Angstroms has been compiled and compared with the lines predicted by the CHIANTI database. The CHIANTI database reproduces the vast majority of lines observed at these wavelengths. CHIANTI includes IDL (Interactive Data Language) routines to calculate optically thin synthetic spectra for equilibrium conditions. IDL routines to calculate theoretical line intensities required for electron density or temperature diagnostics and emission measure studies are also included. The CHIANTI atomic database and supporting IDL routines are available by anonymous FTP.

  12. GLOED - GLOBAL EMISSIONS DATABASE SOFTWARE DEVELOPED BY EPA

    EPA Science Inventory

    The paper describes an EPA-developed, powerful software package called the Global Emissions Database (GloED). loED is a user-friendly, menu-driven tool for storage and retrieval of emissions factors and activity data on a country-specific basis. ata can be selected from databases...

  13. Commercial Aircraft Emission Scenario for 2020: Database Development and Analysis

    NASA Technical Reports Server (NTRS)

    Sutkus, Donald J., Jr.; Baughcum, Steven L.; DuBois, Douglas P.; Wey, Chowen C. (Technical Monitor)

    2003-01-01

    This report describes the development of a three-dimensional database of aircraft fuel use and emissions (NO(x), CO, and hydrocarbons) for the commercial aircraft fleet projected to 2020. Global totals of emissions and fuel burn for 2020 are compared to global totals from previous aircraft emission scenario calculations.

  14. Comparison of global inventories of CO2 emissions from biomass burning during 2002-2011 derived from multiple satellite products.

    PubMed

    Shi, Yusheng; Matsunaga, Tsuneo; Saito, Makoto; Yamaguchi, Yasushi; Chen, Xuehong

    2015-11-01

    This study compared five widely used globally gridded biomass burning emissions inventories for the 2002-2011 period (Global Fire Emissions Database 3 (GFED3), Global Fire Emissions Database 4 (GFED4), Global Fire Assimilation System 1.0 (GFAS1.0), Fire INventory from NCAR 1.0 (FINN1.0) and Global Inventory for Chemistry-Climate studies-GFED4 (G-G)). Average annual CO2 emissions range from 6521.3 to 9661.5 Tg year(-1) for five inventories, with extensive amounts in Africa, South America and Southeast Asia. Coefficient of Variation for Southern America, Northern and Southern Africa are 30%, 39% and 48%. Globally, the majority of CO2 emissions are released from savanna burnings, followed by forest and cropland burnings. The largest differences among the five inventories are mainly attributable to the overestimation of CO2 emissions by FINN1.0 in Southeast Asia savanna and cropland burning, and underestimation in Southern Africa savanna and Amazon forest burning. The overestimation in Africa by G-G also contributes to the differences. PMID:26281761

  15. The use of satellite-measured aerosol optical depth to constrain biomass burning emissions source strength in the global model GOCART

    NASA Astrophysics Data System (ADS)

    Petrenko, Mariya; Kahn, Ralph; Chin, Mian; Soja, Amber; Kucsera, Tom; Harshvardhan, null

    2012-09-01

    Simulations of biomass burning (BB) emissions in chemistry transport models strongly depend on the inventories that define emission source location and strength. We use 13 global biomass burning emission estimates, including the widely used Global Fire Emission Database (GFED) monthly and daily versions, Fire Radiative Power (FRP)-based Quick Fire Emission Data set QFED, and 11 calculated emissions from different combinations of burned area based on the Moderate Resolution Imaging Spectroradiometer (MODIS) products, effective fuel load, and species emission factors as alternative inputs to the global Goddard Chemistry Aerosol Radiation and Transport (GOCART) model. The resultant simulated aerosol optical depth (AOD) and its spatial distribution are compared to AOD snapshots measured by the MODIS instrument for 124 fire events occurring between 2006 and 2007. This comparison exposes the regional biases of each emission option. GOCART average fire AOD values compare best to MODIS-measured AOD when the daily GFED inventory is used as input to GOCART. Even though GFED-based emission options provide the lowest emissions in the tropics, GFED-based GOCART AOD compares best with MODIS AOD in tropical cases. Fire-counts-based emission options give the largest emission estimates in the boreal regions, and the model performs best at higher latitudes with these inputs when compared to MODIS. Comparison of total annual BB emissions by all inventories suggests that burned area estimates are usually the largest source of disagreement. It is also shown that the quantitative relationship between BB aerosol emission rate and model-simulated AOD is related to the horizontal plume dispersion, which can be approximated by the wind speed in the planetary boundary layer in most cases. Thus, given average wind speed of the smoke plume environment, MODIS-measured AOD can provide a constraint to the strength of BB sources at the level of individual plumes.

  16. SPECIATE - EPA'S DATABASE OF SPECIATED EMISSION PROFILES

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency's (EPA) repository of total organic compound (TOC) and particulate matter (PM) speciation profiles for emissions from air pollution sources. The data base has recently been updated and an associated report has recently been re...

  17. Fossil-Fuel C02 Emissions Database and Exploration System

    NASA Astrophysics Data System (ADS)

    Krassovski, M.; Boden, T.

    2012-04-01

    Fossil-Fuel C02 Emissions Database and Exploration System Misha Krassovski and Tom Boden Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory The Carbon Dioxide Information Analysis Center (CDIAC) at Oak Ridge National Laboratory (ORNL) quantifies the release of carbon from fossil-fuel use and cement production each year at global, regional, and national spatial scales. These estimates are vital to climate change research given the strong evidence suggesting fossil-fuel emissions are responsible for unprecedented levels of carbon dioxide (CO2) in the atmosphere. The CDIAC fossil-fuel emissions time series are based largely on annual energy statistics published for all nations by the United Nations (UN). Publications containing historical energy statistics make it possible to estimate fossil-fuel CO2 emissions back to 1751 before the Industrial Revolution. From these core fossil-fuel CO2 emission time series, CDIAC has developed a number of additional data products to satisfy modeling needs and to address other questions aimed at improving our understanding of the global carbon cycle budget. For example, CDIAC also produces a time series of gridded fossil-fuel CO2 emission estimates and isotopic (e.g., C13) emissions estimates. The gridded data are generated using the methodology described in Andres et al. (2011) and provide monthly and annual estimates for 1751-2008 at 1° latitude by 1° longitude resolution. These gridded emission estimates are being used in the latest IPCC Scientific Assessment (AR4). Isotopic estimates are possible thanks to detailed information for individual nations regarding the carbon content of select fuels (e.g., the carbon signature of natural gas from Russia). CDIAC has recently developed a relational database to house these baseline emissions estimates and associated derived products and a web-based interface to help users worldwide query these data holdings. Users can identify, explore and download desired CDIAC fossil-fuel CO2 emissions data. This presentation introduces the architecture and design of the new relational database and web interface, summarizes the present state and functionality of the Fossil-Fuel CO2 Emissions Database and Exploration System, and highlights future plans for expansion of the relational database and interface.

  18. CHIANTI - an atomic database for emission lines. III. Continuum radiation and extension of the ion database

    NASA Astrophysics Data System (ADS)

    Landi, E.; Landini, M.; Dere, K. P.; Young, P. R.; Mason, H. E.

    1999-03-01

    CHIANTI provides a database of atomic energy levels, wavelengths, radiative transition probabilities and electron excitation data for a large number of ions of astrophysical interest. This database allows the calculation of theoretical line emissivities necessary for the analysis of optically thin emission line spectra, and includes also a suite of IDL (Interactive Data Language) programs to calculate optically thin synthetic spectra and to perform spectral analysis and plasma diagnostics. The first version (1.0) of the CHIANTI database was released in 1996 te[(Dere et al. 1997)]{Der97} and has been extensively used for analysis of line spectra from astrophysical sources by the scientific community. The present paper describes the first major update to the CHIANTI database which will subsequently be labeled version 2.0. The update consists of the addition of a large number of new ions, the revision of existing data for some ions and the inclusion of an IDL procedure to calculate the continuum. The CHIANTI atomic database and supporting IDL routines are freely available through the internet.

  19. Fossil-Fuel C02 Emissions Database and Exploration System

    NASA Astrophysics Data System (ADS)

    Krassovski, M.; Boden, T.; Andres, R. J.; Blasing, T. J.

    2012-12-01

    The Carbon Dioxide Information Analysis Center (CDIAC) at Oak Ridge National Laboratory (ORNL) quantifies the release of carbon from fossil-fuel use and cement production at global, regional, and national spatial scales. The CDIAC emission time series estimates are based largely on annual energy statistics published at the national level by the United Nations (UN). CDIAC has developed a relational database to house collected data and information and a web-based interface to help users worldwide identify, explore and download desired emission data. The available information is divided in two major group: time series and gridded data. The time series data is offered for global, regional and national scales. Publications containing historical energy statistics make it possible to estimate fossil fuel CO2 emissions back to 1751. Etemad et al. (1991) published a summary compilation that tabulates coal, brown coal, peat, and crude oil production by nation and year. Footnotes in the Etemad et al.(1991) publication extend the energy statistics time series back to 1751. Summary compilations of fossil fuel trade were published by Mitchell (1983, 1992, 1993, 1995). Mitchell's work tabulates solid and liquid fuel imports and exports by nation and year. These pre-1950 production and trade data were digitized and CO2 emission calculations were made following the procedures discussed in Marland and Rotty (1984) and Boden et al. (1995). The gridded data presents annual and monthly estimates. Annual data presents a time series recording 1° latitude by 1° longitude CO2 emissions in units of million metric tons of carbon per year from anthropogenic sources for 1751-2008. The monthly, fossil-fuel CO2 emissions estimates from 1950-2008 provided in this database are derived from time series of global, regional, and national fossil-fuel CO2 emissions (Boden et al. 2011), the references therein, and the methodology described in Andres et al. (2011). The data accessible here take these tabular, national, mass-emissions data and distribute them spatially on a one degree latitude by one degree longitude grid. The within-country spatial distribution is achieved through a fixed population distribution as reported in Andres et al. (1996). This presentation introduces newly build database and web interface, reflects the present state and functionality of the Fossil-Fuel CO2 Emissions Database and Exploration System as well as future plans for expansion.

  20. Characterization, testing, calibration, and validation of the Berlin emissivity database

    NASA Astrophysics Data System (ADS)

    Maturilli, Alessandro; Helbert, Joern

    2014-01-01

    The Berlin emissivity database is a spectral library providing a basis for the interpretation of thermal emission spectra of planetary regoliths. It contains spectra of plagioclase and potassium feldspars, low and high Ca pyroxenes, olivine, sulfur, Martian analogs, and a lunar highland sample in the wavelength range 3-50 μm. Four particle sizes with dimensions <25, 25-63, 63-125, 125-250 μm are measured for each sample. An exhaustive suite of tests was implemented, to characterize the setup in the planetary emissivity laboratory and the emissivities collected in the spectral library. The tests improve the quality of measurements, optimizing the sample preparation, calibration algorithm, sample, blackbody, and chamber temperatures, and all the parameters entering in the measurements or calibration processes. The results of our tests are shown and discussed, together with the implications that these results have on the development of the measurement and calibration procedures.

  1. CHIANTI-AN ATOMIC DATABASE FOR EMISSION LINES. XII. VERSION 7 OF THE DATABASE

    SciTech Connect

    Landi, E.; Del Zanna, G.; Mason, H. E.; Young, P. R.; Dere, K. P.

    2012-01-10

    The CHIANTI spectral code consists of an atomic database and a suite of computer programs to calculate the optically thin spectrum of astrophysical objects and carry out spectroscopic plasma diagnostics. The database includes atomic energy levels, wavelengths, radiative transition probabilities, collision excitation rate coefficients, and ionization and recombination rate coefficients, as well as data to calculate free-free, free-bound, and two-photon continuum emission. Version 7 has been released, which includes several new ions, significant updates to existing ions, as well as Chianti-Py, the implementation of CHIANTI software in the Python programming language. All data and programs are freely available at http://www.chiantidatabase.org, while the Python interface to CHIANTI can be found at http://chiantipy.sourceforge.net.

  2. Jet aircraft engine emissions database development: 1992 military, charter, and nonscheduled traffic

    NASA Technical Reports Server (NTRS)

    Metwally, Munir

    1995-01-01

    Studies relating to environmental emissions database for the military, charter, and non-scheduled traffic for the year 1992 were conducted by McDonnell Douglas Aerospace Transport Aircraft. The report also includes a comparison with a previous emission database for year 1990. Discussions of the methodology used in formulating these databases are provided.

  3. The Use of Satellite-Measured Aerosol Optical Depth to Constrain Biomass Burning Emissions Source Strength in the GOCART Model

    NASA Astrophysics Data System (ADS)

    Petrenko, M. M.; Kahn, R. A.; Chin, M.; Kucsera, T.; Soja, A. J.; Harshvardhan, D.

    2012-12-01

    Simulations of biomass burning (BB) emissions in chemistry transport models strongly depend on the inventories that define emission source location and strength. We compare snapshots of aerosol optical depth (AOD) from Moderate Resolution Imaging Spectroradiometer (MODIS) for 124 fire events occurring between 2006 and 2007 with AOD simulate by the GOCART model in 13 runs using different BB emission options, exposing regional biases of each emission option. The BB emissions input into the Goddard Chemistry Aerosol Radiation and Transport (GOCART) include the widely used Global Fire Emission Database (GFED) monthly and daily versions, Fire Radiative Power (FRP)-based Quick Fire Emission Dataset QFED, and 11 calculated emissions from different combinations of burned area based on the MODIS products, effective fuel load, and species emission factors. MODIS AOD snapshots for 124 globally distributed fire events serve as instantaneous constraint to the strength of the BB sources in the model. Even though globally GOCART average fire AOD values compare best to MODIS-measured AOD when the daily GFED inventory is used as input to GOCART, the regional performance of each inventory is essential when evaluating BB emissions. Even though GFED-based emission options provide the lowest emissions in the tropics, GFED-based GOCART AOD compares best with MODIS AOD in tropical cases. Fire-counts-based emission options give the largest emission estimates in the boreal regions, and the model performs best at higher latitudes with these inputs when compared to MODIS. Comparison of total annual BB emissions by all inventories suggests that burned area estimates are usually the largest source of disagreement. It is also shown that the quantitative relationship between BB aerosol emission rate and model-simulated AOD is related to the horizontal plume dispersion, which can be approximated by the wind speed in the planetary boundary layer in most cases. Thus, given average wind speed of the smoke plume environment, MODIS-measured AOD can provide a constraint to the strength of BB sources at the level of individual plumes.

  4. CHIANTI - An atomic database for emission lines. Version 8

    NASA Astrophysics Data System (ADS)

    Del Zanna, G.; Dere, K. P.; Young, P. R.; Landi, E.; Mason, H. E.

    2015-10-01

    We present version 8 of the CHIANTI database. This version includes a large amount of new data and ions, which represent a significant improvement in the soft X-ray, extreme UV (EUV) and UV spectral regions, which several space missions currently cover. New data for neutrals and low charge states are also added. The data are assessed, but to improve the modelling of low-temperature plasma the effective collision strengths for most of the new datasets are not spline-fitted as previously, but are retained as calculated. This required a change of the format of the CHIANTI electron excitation files. The format of the energy files has also been changed. Excitation rates between all the levels are retained for most of the new datasets, so the data can in principle be used to model high-density plasma. In addition, the method for computing the differential emission measure used in the CHIANTI software has been changed.

  5. Satellite observations indicate substantial spatiotemporal variability in biomass burning NOx emission factors for South America

    NASA Astrophysics Data System (ADS)

    Castellanos, P.; Boersma, K. F.; van der Werf, G. R.

    2013-08-01

    Biomass burning is an important contributor to global total emissions of NOx (NO + NO2). Generally bottom-up fire emissions models calculate NOx emissions by multiplying fuel consumption estimates with static biome specific emission factors, defined in units of grams of NO per kilogram of dry matter consumed. Emission factors are a significant source of uncertainty in bottom-up fire emissions modeling because relatively few observations are available to characterize the large spatial and temporal variability of burning conditions. In this paper we use NO2 tropospheric column observations from the Ozone Monitoring Instrument (OMI) from the year 2005 over South America to calculate monthly NOx emission factors for four fire types: deforestation, savanna/grassland, woodland, and agricultural waste burning. In general, the spatial trends in NOx emission factors calculated in this work are consistent with emission factors derived from in situ measurements from the region, but are more variable than published biome specific global average emission factors widely used in bottom up fire emissions inventories such as the Global Fire Emissions Database (GFED) v3. Satellite based NOx emission factors also indicate substantial temporal variability in burning conditions. Overall, we found that deforestation fires have the lowest NOx emission factors, on average 30 % lower than the emission factors used in GFED v3. Agricultural fire NOx emission factors were the highest, on average a factor of 2 higher than GFED v3 values. For savanna, woodland, and deforestation fires early dry season NOx emission factors were a factor of ~1.5-2.0 higher than late dry season emission factors. A minimum in the NOx emission factor seasonal cycle for deforestation fires occurred in August, the time period of severe drought in South America in 2005. Our results support the hypothesis that prolonged dry spells may lead to an increase in the contribution of smoldering combustion from large diameter fuels to total fire emissions, which would lower the overall modified combustion efficiency (MCE) and NOx emission factor, and offset the higher combustion efficiency of dryer fine fuels. We evaluated the OMI derived NOx emission factors with SCIAMACHY NO2 tropospheric column observations and found improved model performance in regions dominated by fire emissions.

  6. Satellite observations indicate substantial spatiotemporal variability in biomass burning NOx emission factors for South America

    NASA Astrophysics Data System (ADS)

    Castellanos, P.; Boersma, F.; van der Werf, G.

    2013-12-01

    Biomass burning is an important contributor to global total emissions of NOx (NO+NO2). Generally bottom-up fire emissions models calculate NOx emissions by multiplying fuel consumption estimates with static biome specific emission factors, defined in units of grams of NO per kilogram of dry matter consumed. Emission factors are a significant source of uncertainty in bottom-up fire emissions modeling because relatively few observations are available to characterize the large spatial and temporal variability of burning conditions. In this paper we use NO2 tropospheric column observations from the Ozone Monitoring Instrument (OMI) from the year 2005 over South America to calculate monthly NOx emission factors for four fire types: deforestation, savanna/grassland, woodland, and agricultural waste burning. In general, the spatial trends in NOx emission factors calculated in this work are consistent with emission factors derived from in situ measurements from the region, but are more variable than published biome specific global average emission factors widely used in bottom up fire emissions inventories such as the Global Fire Emissions Database (GFED) v3. Satellite based NOx emission factors also indicate substantial temporal variability in burning conditions. Overall, we found that deforestation fires have the lowest NOx emission factors, on average 30% lower than the emission factors used in GFED v3. Agricultural fire NOx emission factors were the highest, on average 80% higher than GFED v3 values. For savanna, woodland, and deforestation fires early dry season NOx emission factors were a factor of ~1.5-2.0 higher than late dry season emission factors. A minimum in the NOx emission factor seasonal cycle for deforestation fires occurred in August, the time period of severe drought in South America in 2005. Our results support the hypothesis that prolonged dry spells may lead to an increase in the contribution of smoldering combustion from large diameter fuels to total fire emissions, which would lower the overall modified combustion efficiency (MCE) and NOx emission factor, and offset the higher combustion efficiency of dryer fine fuels. We evaluated the OMI derived NOx emission factors with SCIAMACHY NO2 tropospheric column observations and found improved model performance in regions dominated by fire emissions.

  7. Development of database of real-world diesel vehicle emission factors for China.

    PubMed

    Shen, Xianbao; Yao, Zhiliang; Zhang, Qiang; Wagner, David Vance; Huo, Hong; Zhang, Yingzhi; Zheng, Bo; He, Kebin

    2015-05-01

    A database of real-world diesel vehicle emission factors, based on type and technology, has been developed following tests on more than 300 diesel vehicles in China using a portable emission measurement system. The database provides better understanding of diesel vehicle emissions under actual driving conditions. We found that although new regulations have reduced real-world emission levels of diesel trucks and buses significantly for most pollutants in China, NOx emissions have been inadequately controlled by the current standards, especially for diesel buses, because of bad driving conditions in the real world. We also compared the emission factors in the database with those calculated by emission factor models and used in inventory studies. The emission factors derived from COPERT (Computer Programmer to calculate Emissions from Road Transport) and MOBILE may both underestimate real emission factors, whereas the updated COPERT and PART5 (Highway Vehicle Particulate Emission Modeling Software) models may overestimate emission factors in China. Real-world measurement results and emission factors used in recent emission inventory studies are inconsistent, which has led to inaccurate estimates of emissions from diesel trucks and buses over recent years. This suggests that emission factors derived from European or US-based models will not truly represent real-world emissions in China. Therefore, it is useful and necessary to conduct systematic real-world measurements of vehicle emissions in China in order to obtain the optimum inputs for emission inventory models. PMID:25968276

  8. Satellite observations indicate substantial spatiotemporal variability in biomass burning NOx emission factors for South America

    NASA Astrophysics Data System (ADS)

    Castellanos, P.; Boersma, K. F.; van der Werf, G. R.

    2014-04-01

    Biomass burning is an important contributor to global total emissions of NOx (NO+NO2). Generally bottom-up fire emissions models calculate NOx emissions by multiplying fuel consumption estimates with static biome-specific emission factors, defined in units of grams of NO per kilogram of dry matter consumed. Emission factors are a significant source of uncertainty in bottom-up fire emissions modeling because relatively few observations are available to characterize the large spatial and temporal variability of burning conditions. In this paper we use NO2 tropospheric column observations from the Ozone Monitoring Instrument (OMI) from the year 2005 over South America to calculate monthly NOx emission factors for four fire types: deforestation, savanna/grassland, woodland, and agricultural waste burning. In general, the spatial patterns in NOx emission factors calculated in this work are consistent with emission factors derived from in situ measurements from the region but are more variable than published biome-specific global average emission factors widely used in bottom-up fire emissions inventories such as the Global Fire Emissions Database (GFED). Satellite-based NOx emission factors also indicate substantial temporal variability in burning conditions. Overall, we found that deforestation fires have the lowest NOx emission factors, on average 30% lower than the emission factors used in GFED v3. Agricultural fire NOx emission factors were the highest, on average a factor of 1.8 higher than GFED v3 values. For savanna, woodland, and deforestation fires, early dry season NOx emission factors were a factor of ~1.5-2 higher than late dry season emission factors. A minimum in the NOx emission factor seasonal cycle for deforestation fires occurred in August, the time period of severe drought in South America in 2005, supporting the hypothesis that prolonged dry spells may lead to an increase in the contribution of smoldering combustion from large-diameter fuels, offsetting the higher combustion efficiency of dryer fine fuels. We evaluated the OMI-derived NOx emission factors with SCIAMACHY NO2 tropospheric column observations and found improved model performance in regions dominated by fire emissions.

  9. DEVELOPMENT OF AN INDOOR AIR POLLUTION SOURCE EMISSIONS DATABASE

    EPA Science Inventory

    The paper discusses the design, structure, and theory of a microcomputer-based relational database which has been created to archive and retrieve published information concerning sources of indoor air pollutants. The database is designed to be used by researchers, architects, pol...

  10. Ten years of the UW high spectral resolution global IR land surface emissivity (UWIREMIS) database

    NASA Astrophysics Data System (ADS)

    Borbas, E. E.; Knuteson, R. O.

    2012-12-01

    The monthly, UW/CIMSS Baseline Fit (BF) global infrared land surface emissivity database has been developed based on combination of the MODIS/MYD11C3 operational emissivity products and some selected laboratory measurements. The database has been available for distribution since 2006 at the http://cimss.ssec.wisc.edu/iremis/ website and includes data from October 2002 at ten wavelengths (3.6, 4.3, 5.0, 5.8, 7.6, 8.3, 9.3, 10.8, 12.1, and 14.3 microns) with 0.05 degree spatial resolution. To derive high spectral resolution emissivity spectra, the UW High Spectral Resolution (HSR) IR Emissivity Algorithm was also developed. This algorithm uses a principal component analysis (PCA) regression from a combination of high spectral resolution laboratory measurements of selected materials, and the above-mentioned UW/CIMSS Baseline Fit (BF) Global Infrared Land Surface Emissivity Database to provide a 5 wavenumber resolution emissivity database at 416 wavenumbers. Applying the UW HSR Emissivity Algorithm to the UW BF emissivity data makes it possible to create a monthly instrument specific emissivity spectrum for any application involving forward model calculations such as retrieval methods and NWP assimilation or for use in studies of surface energy and water balance. This poster introduces the latest updates and results focusing on the ten year-long available dataset.

  11. USER'S GUIDE FOR GLOED VERSION 1.0 - THE GLOBAL EMISSIONS DATABASE

    EPA Science Inventory

    The document is a user's guide for the EPA-developed, powerful software package, Global Emissions Database (GloED). GloED is a user-friendly, menu-driven tool for storing and retrieving emissions factors and activity data on a country-specific basis. Data can be selected from dat...

  12. Jet aircraft engine exhaust emissions database development: Year 1990 and 2015 scenarios

    NASA Technical Reports Server (NTRS)

    Landau, Z. Harry; Metwally, Munir; Vanalstyne, Richard; Ward, Clay A.

    1994-01-01

    Studies relating to environmental emissions associated with the High Speed Civil Transport (HSCT) military jet and charter jet aircraft were conducted by McDonnell Douglas Aerospace Transport Aircraft. The report includes engine emission results for baseline 1990 charter and military scenario and the projected jet engine emissions results for a 2015 scenario for a Mach 1.6 HSCT charter and military fleet. Discussions of the methodology used in formulating these databases are provided.

  13. CHIANTI - an atomic database for emission lines, Paper 4: Extension to X-ray Wavelengths

    NASA Astrophysics Data System (ADS)

    Dere, K. P.; Landi, E.; Young, P. R.; Del Zanna, G.

    2001-05-01

    CHIANTI provides a database of atomic energy levels, wavelengths, radiative transition probabilities and electron excitation data for a large number of ions of astrophysical interest. It also includes a suite of Interactive Data Language (IDL) programs to calculate optically thin synthetic spectra and to perform spectral analysis and plasma diagnostics. This database allows the calculation of theoretical line emissivities necessary for the analysis of optically thin emission line spectra. The first version of the CHIANTI database was released in 1996 (Dere et al., 1996). The second version, released in 1999, included continuum emission and data for additional ions (Landi et al. 1999). Both versions of the CHIANTI database have been used extensively by the astrophysical and solar communities to analyze emission line spectra from astrophysical sources. Now the CHIANTI database has been extended to wavelengths shorter than 50Å by including atomic data for the hydrogen and helium isoelectronic sequences, inner-shell transitions and satellite lines and several other ions. In addition, some of the ions already present in the database have been updated and extended with new atomic data from published calculations.

  14. CHIANTI-An Atomic Database for Emission Lines. IV. Extension to X-Ray Wavelengths

    NASA Astrophysics Data System (ADS)

    Dere, K. P.; Landi, E.; Young, P. R.; Del Zanna, G.

    2001-06-01

    CHIANTI provides a database of atomic energy levels, wavelengths, radiative transition probabilities, and electron excitation data for a large number of ions of astrophysical interest. It also includes a suite of Interactive Data Language programs to calculate optically thin synthetic spectra and to perform spectral analysis and plasma diagnostics. This database allows the calculation of theoretical line emissivities necessary for the analysis of optically thin emission-line spectra. The first version (1.01) of the CHIANTI database was released in 1996 and published by Dere et al. in 1997 as Paper I in this series. The second version, released in 1999 by Landi et al., included continuum emission and data for additional ions. Both versions of the CHIANTI database have been used extensively by the astrophysical and solar communities to analyze emission-line spectra from astrophysical sources. Now the CHIANTI database has been extended to wavelengths shorter than 50 Å by including atomic data for the hydrogen and helium isoelectronic sequences, inner-shell transitions and satellite lines, and several other ions. In addition, some of the ions already present in the database have been updated and extended with new atomic data from published calculations.

  15. Estimating Biomass Burning Emissions for Carbon Cycle Science and Resource Monitoring & Management

    NASA Astrophysics Data System (ADS)

    French, N. H.; McKenzie, D.; Erickson, T. A.; McCarty, J. L.; Ottmar, R. D.; Kasischke, E. S.; Prichard, S. J.; Hoy, E.; Endsley, K.; Hamermesh, N. K.

    2012-12-01

    Biomass burning emissions, including emissions from wildland fire, agricultural and rangeland burning, and peatland fires, impact the atmosphere dramatically. Current tools to quantify emission sources are developing quickly in a response to the need by the modeling community to assess fire's role in the carbon cycle and the land management community to understand fire effects and impacts on air quality. In a project funded by NASA, our team has developed methods to spatially quantify wildland fire emissions for the contiguous United States (CONUS) and Alaska (AK) at regional scales. We have also developed a prototype web-based information system, the Wildland Fire Emissions Information System (WFEIS) to make emissions modeling tools and estimates for the CONUS and AK available to the user community. With new funding through two NASA programs, our team from MTRI, USFS, and UMd will be further developing WFEIS to provide biomass burning emissions estimates for the carbon cycle science community and for land and air quality managers, to improve the way emissions estimates are calculated for a variety of disciplines. In this poster, we review WFEIS as it currently operates and the plans to extend the current system for use by the carbon cycle science community (through the NASA Carbon Monitoring System Program) and resource management community (through the NASA Applications Program). Features to be enhanced include an improved accounting of biomass present in canopy fuels that are available for burning in a forest fire, addition of annually changing vegetation biomass/fuels used in computing fire emissions, and quantification of the errors present in the estimation methods in order to provide uncertainty of emissions estimates across CONUS and AK. Additionally, WFEIS emissions estimates will be compared with results obtained with the Global Fire Emissions Database (GFED), which operates at a global scale at a coarse spatial resolution, to help improve GFED estimates and possibly integrate some GFED concepts into WFEIS. Possibilities for WFEIS are broad, and as more funding is secured the WFEIS team foresees development of similar regional biomass burning estimation systems developing in other regions beyond the US.

  16. Global Emissions Database (GLoED) version 1.0 (on diskette). Software

    SciTech Connect

    1997-09-01

    The Global Emissions Database (GloED) is a user-friendly, menu-driven tool for storing and retrieving emissions factors and activity data on a country-specific basis. Data can be selected from databases resident within GloED and/or supplied by the user. The data are used to construct emissions scenarios for the countries and sources selected. References are linked to the data to ensure clear data pedigrees. The scenario outputs can be displayed on thematic global maps or other graphic outputs such as pie or bar charts. In addition, data files can be exported to a printer. The majority of the datasets are single gas (i.e., methane emissions datasets). Some of the datasets include emissions from several greenhouse gases. The sources included emission from: motor vehicles, landfills, minor CH{sub 4} sources, rice cultivation, fuelwood burning, global VOC, animal waste methane, animal enteric CH{sub 4}, domestic waste water, underground mines, biomass burning, and CH{sub 4} from oil and gas production. GloED is a software system designed as a tool to generate estimates of global emissions by combining pollutant-specific emission factors with quantitative data on emission-producing activities for that source. GloED also serves as a repository for emissions data, activity data, and emission factors.

  17. A Prescribed Fire Emission Factors Database for Land Management and Air Quality Applications

    SciTech Connect

    Lincoln, Emily; Hao, WeiMin; Baker, S.; Yokelson, Robert J.; Burling, Ian R.; Urbanski, Shawn; Miller, J. Wayne; Weise, David; Johnson, Timothy J.

    2010-12-20

    The Clean Air Act, its amendments, and air quality regulations require that prescribed fire managers estimate the quantity of emissions that a prescribed fire will produce. Information on emissions is available for these calculations; however, it is often incomplete or difficult to find. Tables and computer models can also provide some of this information, but the quality and applicability of the data to a specific site are unknown. In conjunction with three research projects developing new emissions data and meteorological tools to assist prescribed fire managers, the Resource Conservation and Climate Change Program Area of the Department of Defense's Strategic Environmental Research and Development Program is supporting development of a database that contains emissions information related to prescribed burning. Ultimately the vetted database will be available on the Internet and will contain emissions information that has been developed from laboratory and field-scale measurements and has been published.

  18. A Prescribed Fire Emission Factors Database for Land Management and Air Quality Applications

    NASA Astrophysics Data System (ADS)

    Lincoln, E.; Hao, W.; Baker, S.; Yokelson, R. J.; Burling, I. R.; Urbanski, S. P.; Miller, W.; Weise, D. R.; Johnson, T. J.

    2010-12-01

    Prescribed fire is a significant emissions source in the U.S. and that needs to be adequately characterized in atmospheric transport/chemistry models. In addition, the Clean Air Act, its amendments, and air quality regulations require that prescribed fire managers estimate the quantity of emissions that a prescribed fire will produce. Several published papers contain a few emission factors for prescribed fire and additional results are found in unpublished documents whose quality has to be assessed. In conjunction with three research projects developing detailed new emissions data and meteorological tools to assist prescribed fire managers, the Strategic Environmental Research and Development Program (SERDP) is supporting development of a database that contains emissions information related to prescribed burning. Ultimately, this database will be available on the Internet and will contain older emissions information that has been assessed and newer emissions information that has been developed from both laboratory-scale and field measurements. The database currently contains emissions information from over 300 burns of different wildland vegetation types, including grasslands, shrublands, woodlands, forests, and tundra over much of North America. A summary of the compiled data will be presented, along with suggestions for additional categories.

  19. Scheduled Civil Aircraft Emission Inventories for 1999: Database Development and Analysis

    NASA Technical Reports Server (NTRS)

    Sutkus, Donald J., Jr.; Baughcum, Steven L.; DuBois, Douglas P.

    2001-01-01

    This report describes the development of a three-dimensional database of aircraft fuel burn and emissions (NO(x), CO, and hydrocarbons) for the scheduled commercial aircraft fleet for each month of 1999. Global totals of emissions and fuel burn for 1999 are compared to global totals from 1992 and 2015 databases. 1999 fuel burn, departure and distance totals for selected airlines are compared to data reported on DOT Form 41 to evaluate the accuracy of the calculations. DOT Form T-100 data were used to determine typical payloads for freighter aircraft and this information was used to model freighter aircraft more accurately by using more realistic payloads. Differences in the calculation methodology used to create the 1999 fuel burn and emissions database from the methodology used in previous work are described and evaluated.

  20. The Evaluation System Design of GIS-Based Oil and Gas Resources Carbon Emission Database Management

    NASA Astrophysics Data System (ADS)

    Zhu, Wenju; Bi, Jiantao; Wang, Xingxing; Zhu, Zuojia; Pang, Wenqi

    2014-03-01

    Due to the importance of research on carbon budgets in natural processes, it is critical to be able to effectively manage and process all types of data in order to get measure carbon emissions. For this purpose, data produced in oil and gas exploration and natural processes are the focus of this research. Various tools are used including Oracle11g for data storage, Arc Engine combined with Microsoft Visual C# among others including C++ and the Database Storage Management Platform with GIS software functions. The IPCC algorithms are the most important reference, combine this with actual events, a new calculation model about oil and gas resources carbon emission was constructed. This model will analyze and predict the amount of carbon emissions in the oil and gas production in the future. Putting the new calculation model into the Database Storage Management Platform, an Intelligent Prediction Database Platform contained the new calculation model was established.

  1. Spatio-temporal Uncertainty Quantification of Biospheric Models through Gaussian Processes and Stochastic Collocation: An Example Using the CASA-GFED Model

    NASA Astrophysics Data System (ADS)

    Yadav, V.; Michalak, A. M.

    2013-12-01

    Quantifying the uncertainty associated with predictions of mechanistic biospheric models remains an important problem, and is essential for accurately performing multi-model intercomparisons and syntheses. When individual simulations are computationally inexpensive, a simple Monte-Carlo approach can be adopted to quantify this uncertainity. However, this simple approach becomes intractable for mechanistic models with substantial computational costs. To overcome these computational bottlenecks, sparse sampling based methods that can capture the mechanistic model response using a small number of model simulations are required. Two such methods are explored in this study to quantify the uncertainity of the CASA-GFED mechanistic biosphere model. Random 'Latin hypercube' and deterministic 'polynomial chaos' sampling designs are used to construct Gaussian process (GP), and stochastic collocation (SC) surrogate models of the CASA-GFED biospheric model. With the aid of the GP model, we map the spatio-temporal impact of the uncertainty associated with temperature, precipitation, fraction of photosynthetically active radiation, and light use efficiency on estimates of the Net Primary Productivity produced by CASA-GFED. We find that both GP and SC models can accurately capture the mean and the variance of the mechanistic model output in substantially fewer simulations then a standard Monte-Carlo procedure. The GP model also provides additional details about the influence of uncertain variables on the mechanistic model output. However, this additional information comes with higher computational cost that is dependent on the parameterization of the covariance structure between the sampled variables used to model the response of the mechanistic model.

  2. MAGA, a new database of gas natural emissions: a collaborative web environment for collecting data.

    NASA Astrophysics Data System (ADS)

    Cardellini, Carlo; Chiodini, Giovanni; Frigeri, Alessandro; Bagnato, Emanuela; Frondini, Francesco; Aiuppa, Alessandro

    2014-05-01

    The data on volcanic and non-volcanic gas emissions available online are, as today, are incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various scales. A new and detailed web database (MAGA: MApping GAs emissions) has been developed, and recently improved, to collect data on carbon degassing form volcanic and non-volcanic environments. MAGA database allows researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and with the ingestion in to the database of the data from: i) a literature survey on publications on volcanic gas fluxes including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores, and ii) the revision and update of Googas database on non-volcanic emission of the Italian territory (Chiodini et al., 2008), in the framework of the Deep Earth Carbon Degassing (DECADE) research initiative of the Deep Carbon Observatory (DCO). For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of each site. In this phase data can be accessed on the network from a web interface, and data-driven web service, where software clients can request data directly from the database, are planned to be implemented shortly. This way Geographical Information Systems (GIS) and Virtual Globes (e.g., Google Earth) could easily access the database, and data could be exchanged with other database. At the moment the database includes: i) more than 1000 flux data about volcanic plume degassing from Etna and Stromboli volcanoes, ii) data from ~ 30 sites of diffuse soil degassing from Napoletan volcanoes, Azores, Canary, Etna, Stromboli, and Vulcano Island, several data on fumarolic emissions (~ 7 sites) with CO2 fluxes; iii) data from ~ 270 non volcanic gas emission site in Italy. We believe MAGA data-base is an important starting point to develop a large scale, expandable data-base aimed to excite, inspire, and encourage participation among researchers. In addition, the possibility to archive location and qualitative information for gas emission/sites not yet investigated, could stimulate the scientific community for future researches and will provide an indication on the current uncertainty on deep carbon fluxes global estimates

  3. Scheduled civil aircraft emission inventories for 1992: Database development and analysis

    NASA Technical Reports Server (NTRS)

    Baughcum, Steven L.; Tritz, Terrance G.; Henderson, Stephen C.; Pickett, David C.

    1996-01-01

    This report describes the development of a three-dimensional database of aircraft fuel burn and emissions (fuel burned, NOx, CO, and hydrocarbons) from scheduled commercial aircraft for each month of 1992. The seasonal variation in aircraft emissions was calculated for selected regions (global, North America, Europe, North Atlantic, and North Pacific). A series of parametric calculations were done to quantify the possible errors introduced from making approximations necessary to calculate the global emission inventory. The effects of wind, temperature, load factor, payload, and fuel tankering on fuel burn were evaluated to identify how they might affect the accuracy of aircraft emission inventories. These emissions inventories are available for use by atmospheric scientists conducting the Atmospheric Effects of Aviation Project (AEAP) modeling studies. Fuel burned and emissions of nitrogen oxides (NOx as N02), carbon monoxide, and hydrocarbons have been calculated on a 1 degree latitude x 1 degree longitude x 1 kilometer altitude grid and delivered to NASA as electronic files.

  4. Access to Emissions Distributions and Related Ancillary Data through the ECCAD database

    NASA Astrophysics Data System (ADS)

    Granier, Claire; Boulanger, Damien; D'Angiola, Ariela; Darras, Sabine; Liousse, Catherine; Marlière, Jean-Francois; Miéville, Aude; Paulin, Mireille; Pignot, Vincent; Zemankova, Katerina

    2013-04-01

    During the past few years, the ECCAD (Emissions of atmospheric Compounds & Compilation of Ancillary Data) database was developed in order to provide a user-friendly access to surface emissions and ancillary data, i.e. data on land use, active fires, burned areas, population, etc. This database and the emissions portal of the GEIA (Global Emissions InitiAtive) project have been merged. ECCAD is a sub-project of the ETHER French Atmospheric Chemistry Data Centre (CNES and CNRS, http://www.pole-ether.fr). The ECCAD database includes currently a large diversity of datasets, which provide global and regional surface emissions for a large set of chemical compounds. All the data are provided at a 0.5x0.5 or 1x1 degree resolution. ECCAD provides detailed metadata on each of the datasets, including information on complete references and methodology, and links to the original inventories. Several tools are provided for the visualization of the data, for computing global and regional totals and for an interactive spatial and temporal analysis. The data can be downloaded as interoperable NetCDF CF-compliant files, i.e. the data are compatible with many other client interfaces and can be downloaded through requests as geographical coverage or geo-referenced maps. ECCAD has currently more than 700 users originating from more than 30 countries. ECCAD benefits from this large international community of users to expand the number of emission datasets made available. The ECCAD database and the web interface are in continuous development: new tools are being built to improve the analysis and comparison of emissions and ancillary data. These new tools include a regridding tool, arithmetic expressions to combine different maps, interactive selection of scale values, and new tools for temporal profiles analysis. Comparisons of data at different scales is also in development. An online module to calculate biomass burning emissions is being improved, and will also be extended to anthropogenic emissions. The presentation will provide information on all the datasets available within ECCAD, as well as examples of the analysis work that can be done online from the database. All the datasets, associated metadata, tools and download can be achieved from the ECCAD website: http://eccad.pole-ether.fr

  5. Access to Emissions Distributions and Related Ancillary Data through the ECCAD database

    NASA Astrophysics Data System (ADS)

    Darras, Sabine; Granier, Claire; Liousse, Catherine; Mieville, Aude; Boulanger, Damien; Brissebrat, Guillaume; Paulin, Mireille; Richard, Hitier

    2014-05-01

    The Emissions of atmospheric Compounds & Compilation of Ancillary Data (ECCAD) database provides a user-friendly access to surface emissions and ancillary data, i.e. data on land use, active fires, burned areas, population, etc. ECCAD is the emissions database of the GEIA (Global Emissions InitiAtive) project. ECCAD is a sub-project of the ETHER French Atmospheric Chemistry Data Centre (CNES and CNRS, http://www.pole-ether.fr). The ECCAD database includes a large diversity of datasets, which provide global and regional surface emissions for a large set of chemical compounds, at a 0.5x0.5 or 1x1 degree resolution. A new version of ECCAD is being developped allowing to handle any resolution grid and geographical coverage. ECCAD provides detailed metadata for each of the datasets, including information on references, how to cite the datasets when used, the methodology, and links to the original inventories. Several tools are provided for the visualization of the data, for computing global and regional totals and for an interactive spatial and temporal analysis. The data can be downloaded as interoperable NetCDF CF-compliant files, i.e. the data are compatible with many other client interfaces. ECCAD has currently more than 1200 users originating from more than 70 countries. The project benefits from this large international community of users to expand the number of emission datasets made available. The ECCAD database and the web interface are in continuous development: new tools are being built to improve the analysis and comparison of emissions and ancillary data. They include a regridding tool, arithmetic expressions to combine different maps, new tools for temporal profiles analysis, and comparisons of data at different scales. An online module to calculate biomass burning emissions is being improved and will be extended to anthropogenic emissions. The presentation will provide information on all the datasets available within ECCAD, as well as examples of the analysis work that can be done online through the website: http://eccad.pole-ether.fr

  6. Daily and Hourly Variability in Global Fire Emissions and Consequences for Atmospheric Model Predictions of Carbon Monoxide

    NASA Technical Reports Server (NTRS)

    Mu, M.; Randerson, J. T.; van der Werf, G. R.; Giglio, L.; Kasibhatla, P.; Morton, D.; Collatz, G. J.; DeFries, R. S.; Hyer, E. J.; Prins, E. M.; Griffith, D. W. T.; Wunch, D.; Toon, G. C.; Sherlock, V.; Wennberg, P. O.

    2011-01-01

    Attribution of the causes of atmospheric trace gas and aerosol variability often requires the use of high resolution time series of anthropogenic and natural emissions inventories. Here we developed an approach for representing synoptic- and diurnal-scale temporal variability in fire emissions for the Global Fire Emissions Database version 3 (GFED3). We distributed monthly GFED3 emissions during 2003-2009 on a daily time step using Moderate Resolution Imaging Spectroradiometer (MODIS)-derived measurements of active fires from Terra and Aqua satellites. In parallel, mean diurnal cycles were constructed from Geostationary Operational Environmental Satellite (GOES) active fire observations. We found that patterns of daily variability in fires varied considerably across different biomes, with short but intense periods of daily emissions in boreal ecosystems and lower intensity (but more continuous) periods of bunting in savannas. On diurnal timescales, our analysis of the GOES active fires indicated that fires in savannas, grasslands, and croplands occurred earlier in the day as compared to fires in nearby forests. Comparison with Total Carbon Column Observing Network (TCCON) and Measurements of Pollution in the Troposphere (MOPITT) column CO observations provided evidence that including daily variability in emissions moderately improved atmospheric model simulations, particularly during the fire season and near regions with high levels of biomass burning. The high temporal resolution estimates of fire emissions developed here may ultimately reduce uncertainties related to fire contributions to atmospheric trace gases and aerosols. Important future directions include reconciling top-down and bottom up estimates of fire radiative power and integrating burned area and active fire time series from multiple satellite sensors to improve daily emissions estimates.

  7. Daily and 3-hourly Variability in Global Fire Emissions and Consequences for Atmospheric Model Predictions of Carbon Monoxide

    NASA Technical Reports Server (NTRS)

    Mu, M.; Randerson, J. T.; vanderWerf, G. R.; Giglio, L.; Kasibhatla, P.; Morton, D.; Collatz, G. J.; DeFries, R. S.; Hyer, E. J.; Prins, E. M.; Griffith, D. W. T.; Wunch, D.; Toon, G. C.; Sherlock, V.; Wennberg, P. O.

    2011-01-01

    Attribution of the causes of atmospheric trace gas and aerosol variability often requires the use of high resolution time series of anthropogenic and natural emissions inventories. Here we developed an approach for representing synoptic- and diurnal-scale temporal variability in fire emissions for the Global Fire Emissions Database version 3 (GFED3). We disaggregated monthly GFED3 emissions during 2003.2009 to a daily time step using Moderate Resolution Imaging Spectroradiometer (MODIS) ]derived measurements of active fires from Terra and Aqua satellites. In parallel, mean diurnal cycles were constructed from Geostationary Operational Environmental Satellite (GOES) Wildfire Automated Biomass Burning Algorithm (WF_ABBA) active fire observations. Daily variability in fires varied considerably across different biomes, with short but intense periods of daily emissions in boreal ecosystems and lower intensity (but more continuous) periods of burning in savannas. These patterns were consistent with earlier field and modeling work characterizing fire behavior dynamics in different ecosystems. On diurnal timescales, our analysis of the GOES WF_ABBA active fires indicated that fires in savannas, grasslands, and croplands occurred earlier in the day as compared to fires in nearby forests. Comparison with Total Carbon Column Observing Network (TCCON) and Measurements of Pollution in the Troposphere (MOPITT) column CO observations provided evidence that including daily variability in emissions moderately improved atmospheric model simulations, particularly during the fire season and near regions with high levels of biomass burning. The high temporal resolution estimates of fire emissions developed here may ultimately reduce uncertainties related to fire contributions to atmospheric trace gases and aerosols. Important future directions include reconciling top ]down and bottom up estimates of fire radiative power and integrating burned area and active fire time series from multiple satellite sensors to improve daily emissions estimates.

  8. Access to Emissions Distributions and Related Ancillary Data through the ECCAD database

    NASA Astrophysics Data System (ADS)

    Darras, Sabine; Granier, Claire; Liousse, Catherine; Enriquez, Edgar; Boulanger, Damien; Mieville, Aude

    2015-04-01

    The ECCAD (Emissions of atmospheric Compounds & Compilation of Ancillary Data) database provides a user-friendly access to global and regional surface emissions for a large set of chemical compounds and ancillary data (land use, active fires, burned areas, population, etc.) at a 0.5x0.5 or 1x1 degree resolution. ECCAD is the emissions database of the GEIA (Global Emissions InitiAtive) project and a sub-project of the French Atmospheric Chemistry Data Centre Ether (CNES and CNRS). ECCAD has currently more than 1700 users originating from more than 70 countries. The project benefits from this large international community of users to expand the number of emission datasets available. ECCAD provides detailed metadata for each of the datasets and various tools for data visualization, for computing global and regional totals and for interactive spatial and temporal analysis. The data can be downloaded as interoperable NetCDF CF-compliant files, i.e. the data are compatible with many other client interfaces. ECCAD will soon allow to handle any resolution grid and geographical coverage. The presentation will provide information on the datasets available within ECCAD, as well as examples of the analysis work that can be done online through the website: http://eccad.pole-ether.fr eccad@sedoo.fr.

  9. Spectral Characterization of Mars Analogues From the Berlin Emissivity Database (BED)

    NASA Astrophysics Data System (ADS)

    Maturilli, A.; Helbert, J.

    2007-12-01

    Several well-recognized Martian soil analogues have been classified and studied in the past years. The JSC Mars-1, collected and distributed under control of the NASA Johnson Space Center, originates from Pu Nene cinder cone in Hawaii, USA. It is a palagonitic tephra (glassy volcanic ash altered at low temperatures), whose spectral features resemble the bright regions on Mars. The Salten Skov, coming from a subsurface deposit in the Midjutland region of Denmark, is a Fe-oxide precipitate with a dark red color, composed mainly of goethite, hematite and maghemite, with mineralogical and magnetic close to those of the martian soil. Montmorillonite and palagonite are other natural materials commonly referred as Martian soil analogues. We present and discuss the emissivity spectra of these analogue minerals from the Berlin Emissivity Database spectral library. The Berlin Emissivity Database (BED) currently contains also emissivity spectra of plagioclase and potassium feldspars, low Ca and high Ca pyroxenes, olivine, elemental sulfur and a lunar highland soil sample measured in the wavelength range from 3 to 50 ?m as a function of particle size. For each sample we measured the spectra of four particle size separates ranging from < 25 to 250 ?m. The current main setup at the Planetary Emissivity Laboratory (PEL) at DLR consist of an emissivity device built at DLR coupled to a Fourier transform infrared spectrometer (Bruker VERTEX 80v) equipped with both a cooled MTC detector and a room temperature DTGS detector. All spectra were acquired with a spectral resolution of 4 cm- 1. The combination of detectors and spectrometer allows a unique wavelength coverage encompassing the whole thermal radiation range measured by spacecraft instruments. The emissivity device is currently purged with dry air, while the spectrometer is evacuated. In a future upgrade of the facility the emissivity device will be replaced by a planetary simulation chamber which can be evacuated and which allows to heat sample up to Mercury surface temperatures.

  10. VizieR Online Data Catalog: CHIANTI - An Atomic Database For Emission Lines I. (Dere+ 1997)

    NASA Astrophysics Data System (ADS)

    Dere, K. P.; Landi, E.; Mason, H. E.; Monsignori Fossi, B. C.; Young, P. R.

    1997-04-01

    A comprehensive set of accurate atomic data is required for analyses of astrophysical and solar spectra. CHIANTI provides a database of atomic energy levels, wavelengths, radiative data and electron excitation data for ions which are abundant in cosmic plasmas. The most recent electron excitation data have been assessed and stored following the method of Burgess & Tully (1992A&A...254..436B). The current version is essentially complete for specifying the emission spectrum at wavelengths greater than 50Å. A list of observed lines in the spectral region between 50 and 1100Å has been compiled and compared with the lines predicted by the CHIANTI database. The CHIANTI database reproduces the vast majority of lines observed at these wavelengths. CHIANTI includes IDL (Interactive Data Language) routines to calculate optically thin synthetic spectra for equilibrium conditions. IDL routines to calculate theoretical line intensities required for electron density or temperature diagnostics and emission measure studies are also included. The CHIANTI atomic database and supporting IDL routines are available by anonymous FTP. (1 data file).

  11. Towards improved volcanic emissions budgets: opportunities arising from a new global database of volcanic degassing data

    NASA Astrophysics Data System (ADS)

    McCormick, B. T.; Cottrell, E.; Lopez, O. G.; Venzke, E.; Mather, T. A.; Pyle, D. M.

    2013-12-01

    Accurate global budgets of volcanic emissions are essential to constrain the flux of key volatile species (CO2, SO2, halogens) between major Earth reservoirs, to assess the climatic and environmental impact of volcanic degassing, and for the insights they may provide into volcanic processes, e.g. the style, onset and duration of eruptions. Whilst degassing budgets have been determined for many species, these are inherently limited, being largely static and time-averaged, with coarse spatial resolution and inadequate (or lacking) error analyses. Herein we demonstrate the potential improvements in both regional and global budgets enabled by the use of a new relational volcanic emissions database that is being developed within the online database of Holocene volcanic activity maintained by the Global Volcanism Program (GVP), Volcanoes Of The World 4.0. Funded by the Deep Carbon Observatory's DECADE initiative and GVP, this new database will enable users to link volcanic degassing to coincident activity, which is central to our scientific objectives. This database will explicitly quantify data quality, which has largely been neglected in previous compilations and budget estimates. Observations reveal that volcanic emissions often vary by orders of magnitude, between peak syn-eruptive output and much lower persistent quiescent degassing. For example, timeseries analysis of SO2 emission data at Soufriere Hills points to strong periodicity in degassing, akin to that seen in other geophysical datasets (Nicholson et al., 2013, EPSL). By closely linking degassing and activity datasets, we show that for certain volcanoes a more representative characterization of long term volatile output can be achieved than by the use of a single mean value. We demonstrate that different activity/degassing states can be identified and assess the relative contribution of these states to a volcano's overall output. We also explore the potential for statistical models of degassing trends at well-studied volcanoes to be applied to more poorly-studied analogues, thus providing a means to estimate degassing behavior in these systems, where otherwise sparse, non-representative measurements must be relied upon. We also investigate means of extrapolating measurements of degassing at individual volcanoes to arc and ultimately global totals. Although a power law distribution of gas emissions may not be appropriate (Mori et al., 2013, JVGR), characterization of major degassing sources alone may closely approximate total arc and hence global emissions. We investigate this hypothesis, and consider whether a broad categorization of volcanoes based on their assumed degassing/activity characteristics can offer insight into how best to estimate emissions from those without direct measurements of degassing.

  12. Charting thermal emission variability at Pele, Janus Patera and Kanehekili Fluctus with the Galileo NIMS Io Thermal Emission Database (NITED)

    NASA Astrophysics Data System (ADS)

    Davies, Ashley Gerard; Veeder, Glenn J.; Matson, Dennis L.; Johnson, Torrence V.

    2012-09-01

    Using the NIMS Io Thermal Emission Database (NITED), a collection of over 1000 measurements of radiant flux from Io’s volcanoes (Davies, A.G. et al. [2012]. Geophys. Res. Lett. 39, L01201. doi:10.1029/2011GL049999), we have examined the variability of thermal emission from three of Io’s volcanoes: Pele, Janus Patera and Kanehekili Fluctus. At Pele, the 5-μm thermal emission as derived from 28 night time observations is remarkably steady at 37 ± 10 GW μm-1, re-affirming previous analyses that suggested that Pele an active, rapidly overturning silicate lava lake. Janus Patera also exhibits relatively steady 5-μm thermal emission (≈20 ± 3 GW μm-1) in the four observations where Janus is resolved from nearby Kanehekili Fluctus. Janus Patera might contain a Pele-like lava lake with an effusion rate (QF) of ≈40-70 m3 s-1. It should be a prime target for a future mission to Io in order to obtain data to determine lava eruption temperature. Kanehekili Fluctus has a thermal emission spectrum that is indicative of the emplacement of lava flows with insulated crusts. Effusion rate at Kanehekili Fluctus dropped by an order of magnitude from ≈95 m3 s-1 in mid-1997 to ≈4 m3 s-1 in late 2001.

  13. Charting thermal emission variability at Amirani with the Galileo NIMS Io Thermal Emission Database (NITED)

    NASA Astrophysics Data System (ADS)

    Davies, A. G.; Veeder, G. J.; Hill, S. I.; Matson, D. L.; Johnson, T. V.

    2014-10-01

    We have examined the variability of thermal emission from lava flows at Amirani on Io, using measurements of radiant flux from detections by the Galileo Near Infrared Mapping Spectrometer (NIMS) between 1996 and 2001. Amirani is the longest currently active lava flow field in the Solar System and a persistent thermal source in every Galileo NIMS observation that covers its location. We have quantified the thermal emission from hot spots correlated with discrete areas of new lava flow emplacement at points along the length of the Amirani flow field in high spatial resolution NIMS observations in 2000 and 2001. Where discernible, the position of some effusive activity changes from orbit to orbit. We find the implied style of emplacement of lava at Amirani is consistent with pahoehoe-like flows. There is an estimated 50% decrease in discharge rate between 1997 and late 2001, perhaps linked to an outburst eruption in the Amirani vicinity in February 2001. The variability of thermal emission from Amirani is less than that seen at a number of other persistently active ionian volcanoes (such as Prometheus, Culann, and Loki Patera). All of these volcanoes exhibit large increases and decreases in the absolute magnitude of thermal emission (see Matson et al., 2006 [Loki Patera]; Davies, A.G. et al. [2006]. Icarus 184, 460-477 [Prometheus]; and Davies, A.G., Ennis, M.E. [2011]. Icarus 215, 401-416 [Culann]). At Amirani, as at these volcanoes, the thermal emission measured between 1996 and 2001 indicates a persistent, although variable, supply of magma to the surface. In high spatial resolution NIMS observations of hot spots obtained in 2000 and 2001 we estimate the emitted power from active lava flows associated with Amirani to be ?170 30 GW, which corresponds to total effusion rates (assuming a basaltic composition) from multiple points along the Amirani flow of 34-56 m3/s.

  14. Scheduled Civil Aircraft Emission Inventories for 1976 and 1984: Database Development and Analysis

    NASA Technical Reports Server (NTRS)

    Baughcum, Steven L.; Henderson, Stephen C.; Tritz, Terrance G.

    1996-01-01

    This report describes the development of a three-dimensional database of aircraft fuel burn and emissions (fuel burned, NOx, CO, and hydrocarbons) from scheduled commercial aircraft for four months (February, May, August, and November) of 1976 and 1984. Combining this data with earlier published data for 1990 and 1992, trend analyses for fuel burned, NOx, carbon monoxide, and hydrocarbons were calculated for selected regions (global, North America, Europe, North Atlantic, and North Pacific). These emissions inventories are available for use by atmospheric scientists conducting the Atmospheric Effects of Aviation Project (AEAP) modeling studies. Fuel burned and emissions of nitrogen oxides (NOx as NO2), carbon monoxide, and hydrocarbons have been calculated on a 1 degree latitude x 1 degree longitude x 1 kilometer altitude grid and delivered to NASA as electronic files.

  15. Modeling BVOC isoprene emissions based on a GIS and remote sensing database

    NASA Astrophysics Data System (ADS)

    Wong, Man Sing; Sarker, Md. Latifur Rahman; Nichol, Janet; Lee, Shun-cheng; Chen, Hongwei; Wan, Yiliang; Chan, P. W.

    2013-04-01

    This paper presents a geographic information systems (GIS) model to relate biogenic volatile organic compounds (BVOCs) isoprene emissions to ecosystem type, as well as environmental drivers such as light intensity, temperature, landscape factor and foliar density. Data and techniques have recently become available which can permit new improved estimates of isoprene emissions over Hong Kong. The techniques are based on Guenther et al.'s (1993, 1999) model. The spatially detailed mapping of isoprene emissions over Hong Kong at a resolution of 100 m and a database has been constructed for retrieval of the isoprene maps from February 2007 to January 2008. This approach assigns emission rates directly to ecosystem types not to individual species, since unlike in temperate regions where one or two single species may dominate over large regions, Hong Kong's vegetation is extremely diverse with up to 300 different species in 1 ha. Field measurements of emissions by canister sampling obtained a range of ambient emissions according to different climatic conditions for Hong Kong's main ecosystem types in both urban and rural areas, and these were used for model validation. Results show the model-derived isoprene flux to have high to moderate correlations with field observations (i.e. r2 = 0.77, r2 = 0.63, r2 = 0.37 for all 24 field measurements, subset for summer, and winter data, respectively) which indicate the robustness of the approach when applied to tropical forests at detailed level, as well as the promising role of remote sensing in isoprene mapping. The GIS model and raster database provide a simple and low cost estimation of the BVOC isoprene in Hong Kong at detailed level. City planners and environmental authorities may use the derived models for estimating isoprene transportation, and its interaction with anthropogenic pollutants in urban areas.

  16. CHIANTI: an atomic database for emission lines. II. Comparison with the SERTS-89 active region spectrum

    NASA Astrophysics Data System (ADS)

    Young, P. R.; Landi, E.; Thomas, R. J.

    1998-01-01

    The CHIANTI database was described by Dere et al. (1997, hereafter Paper I) and the present paper applies the atomic data to the study of extreme ultra-violet emission lines found in the SERTS-89 active region spectrum published by Thomas & Neupert (1994). Firstly, the emission line ratios that are insensitive to density and temperature are used to check both the quality of the atomic data and the calibration of the instrument. Secondly, we use, where possible, ratios that are sensitive to density to estimate the electron density from different ions. In general we find excellent agreement between theory and observation, providing confidence in both the atomic data in the CHIANTI database and the quality of the SERTS-89 spectrum. Where inconsistencies between theory and observation exist we try to explain them in terms of either inaccuracies in the atomic data or blending of the lines. One consistent discrepancy was that all observed lines that we analysed in the lambr{430}{450} region were uniformly a factor of 1.5--2.0 weaker than predicted, suggesting that the SERTS-89 calibration may need adjustment in this spectral interval. Serious problems were also found in some of the theoretical predictions for a few ions, especially ion{Fe}{xiv}.

  17. Estimating monthly and state-level NO{sub x}, SO{sub 2}, VOC and CO{sub 2} emissions using the MSCET database

    SciTech Connect

    Cilek, C.M.; Kohout, E.

    1992-07-01

    This paper describes the Month and State Current Emission Trends (MSCET) database. It describes the methodology used to estimate NO{sub x}, SO{sub 2}, VOC, and CO{sub 2} emissions and the data sources used by the methodology. Selected emissions results from the database are presented. 2 refs., 6 figs.

  18. Estimating monthly and state-level NO sub x , SO sub 2 , VOC and CO sub 2 emissions using the MSCET database

    SciTech Connect

    Cilek, C.M.; Kohout, E.

    1992-01-01

    This paper describes the Month and State Current Emission Trends (MSCET) database. It describes the methodology used to estimate NO{sub x}, SO{sub 2}, VOC, and CO{sub 2} emissions and the data sources used by the methodology. Selected emissions results from the database are presented. 2 refs., 6 figs.

  19. The development of a new database of gas emissions: MAGA, a collaborative web environment for collecting data

    NASA Astrophysics Data System (ADS)

    Cardellini, C.; Chiodini, G.; Frigeri, A.; Bagnato, E.; Aiuppa, A.; McCormick, B.

    2013-12-01

    The data on volcanic and non-volcanic gas emissions available online are, as today, incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various spatial and temporal scales. Building on the Googas experience we are now extending its capability, particularly on the user side, by developing a new web environment for collecting and publishing data. We have started to create a new and detailed web database (MAGA: MApping GAs emissions) for the deep carbon degassing in the Mediterranean area. This project is part of the Deep Earth Carbon Degassing (DECADE) research initiative, lunched in 2012 by the Deep Carbon Observatory (DCO) to improve the global budget of endogenous carbon from volcanoes. MAGA database is planned to complement and integrate the work in progress within DECADE in developing CARD (Carbon Degassing) database. MAGA database will allow researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and a complete literature survey on publications on volcanic gas fluxes, by including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores. For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of the site. Data can be accessed on the network from a web interface or as a data-driven web service, where software clients can request data directly from the database. This way Geographical Information Systems (GIS) and Virtual Globes (e.g., Google Earth) can easily access the database, and data can be exchanged with other database. In details the database now includes: i) more than 1000 flux data about volcanic plume degassing from Etna (4 summit craters and bulk degassing) and Stromboli volcanoes, with time averaged CO2 fluxes of ~ 18000 and 766 t/d, respectively; ii) data from ~ 30 sites of diffuse soil degassing from Napoletan volcanoes, Azores, Canary, Etna, Stromboli, and Vulcano Island, with a wide range of CO2 fluxes (from les than 1 to 1500 t/d) and iii) several data on fumarolic emissions (~ 7 sites) with CO2 fluxes up to 1340 t/day (i.e., Stromboli). When available, time series of compositional data have been archived in the database (e.g., for Campi Flegrei fumaroles). We believe MAGA data-base is an important starting point to develop a large scale, expandable data-base aimed to excite, inspire, and encourage participation among researchers. In addition, the possibility to archive location and qualitative information for gas emission/sites not yet investigated, could stimulate the scientific community for future researches and will provide an indication on the current uncertainty on deep carbon fluxes global estimates.

  20. Interannual Variability of Wetland and Fire Methane Emissions

    NASA Astrophysics Data System (ADS)

    Hodson, E. L.; Poulter, B.; Prigent, C.; Spahni, R.; Zimmermann, N. E.

    2011-12-01

    Methane (CH4) has the second highest radiative forcing of any anthropogenic greenhouse gas. The land surface including natural wetlands, rice growing regions, lakes, geologic sources, and fires is estimated to contribute ~50% to global annual methane emissions. Natural wetlands are the largest single source of methane to the atmosphere and the largest land surface source. Understanding the response of methane sources to changes in climate is therefore important for improving estimates of future greenhouse gas emissions to the atmosphere. Inverse modeling studies investigating the impact of wetland, rice, and fire CH4 emissions, conclude that wetlands and rice contribute far more (70% vs. 15%) to year-to-year changes in methane emissions than fires. In this study, we use the same dynamic global vegetation process model LPJ to model both wetland and fire methane emissions for the recent past (1997-2007), which as far as we know has never been done from a process model perspective. We use multiple global satellite products for burned and inundated area as inputs for our model. In addition, we test two concepts for wetland area, using either satellite input only or a mixture of satellite input and modeled partially saturated soils to define wetland area. We compare our fire emissions output to the Global Fire Emissions Database (GFED) project and use inverse modeling studies to constrain our wetland emissions. We conclude that the interannual variability in global fire emissions (-5 to +30 Tg CH4/year) is similar to that for natural wetlands and rice (-10 to +20 Tg CH4/year) when estimated using a process model, which disagree with conclusions from inverse model results. The timing of positive and negative variations in emissions is also quite similar across the different land processes, indicating that climate variations may often suppress or accentuate CH4 emissions from all land sources in the same year.

  1. Global Burned Area and Biomass Burning Emissions from Small Fires

    NASA Technical Reports Server (NTRS)

    Randerson, J. T.; Chen, Y.; vanderWerf, G. R.; Rogers, B. M.; Morton, D. C.

    2012-01-01

    In several biomes, including croplands, wooded savannas, and tropical forests, many small fires occur each year that are well below the detection limit of the current generation of global burned area products derived from moderate resolution surface reflectance imagery. Although these fires often generate thermal anomalies that can be detected by satellites, their contributions to burned area and carbon fluxes have not been systematically quantified across different regions and continents. Here we developed a preliminary method for combining 1-km thermal anomalies (active fires) and 500 m burned area observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) to estimate the influence of these fires. In our approach, we calculated the number of active fires inside and outside of 500 m burn scars derived from reflectance data. We estimated small fire burned area by computing the difference normalized burn ratio (dNBR) for these two sets of active fires and then combining these observations with other information. In a final step, we used the Global Fire Emissions Database version 3 (GFED3) biogeochemical model to estimate the impact of these fires on biomass burning emissions. We found that the spatial distribution of active fires and 500 m burned areas were in close agreement in ecosystems that experience large fires, including savannas across southern Africa and Australia and boreal forests in North America and Eurasia. In other areas, however, we observed many active fires outside of burned area perimeters. Fire radiative power was lower for this class of active fires. Small fires substantially increased burned area in several continental-scale regions, including Equatorial Asia (157%), Central America (143%), and Southeast Asia (90%) during 2001-2010. Globally, accounting for small fires increased total burned area by approximately by 35%, from 345 Mha/yr to 464 Mha/yr. A formal quantification of uncertainties was not possible, but sensitivity analyses of key model parameters caused estimates of global burned area increases from small fires to vary between 24% and 54%. Biomass burning carbon emissions increased by 35% at a global scale when small fires were included in GFED3, from 1.9 Pg C/yr to 2.5 Pg C/yr. The contribution of tropical forest fires to year-to-year variability in carbon fluxes increased because small fires amplified emissions from Central America, South America and Southeast Asia-regions where drought stress and burned area varied considerably from year to year in response to El Nino-Southern Oscillation and other climate modes.

  2. Global burned area and biomass burning emissions from small fires

    NASA Astrophysics Data System (ADS)

    Randerson, J. T.; Chen, Y.; van der Werf, G. R.; Rogers, B. M.; Morton, D. C.

    2012-12-01

    In several biomes, including croplands, wooded savannas, and tropical forests, many small fires occur each year that are well below the detection limit of the current generation of global burned area products derived from moderate resolution surface reflectance imagery. Although these fires often generate thermal anomalies that can be detected by satellites, their contributions to burned area and carbon fluxes have not been systematically quantified across different regions and continents. Here we developed a preliminary method for combining 1-km thermal anomalies (active fires) and 500 m burned area observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) to estimate the influence of these fires. In our approach, we calculated the number of active fires inside and outside of 500 m burn scars derived from reflectance data. We estimated small fire burned area by computing the difference normalized burn ratio (dNBR) for these two sets of active fires and then combining these observations with other information. In a final step, we used the Global Fire Emissions Database version 3 (GFED3) biogeochemical model to estimate the impact of these fires on biomass burning emissions. We found that the spatial distribution of active fires and 500 m burned areas were in close agreement in ecosystems that experience large fires, including savannas across southern Africa and Australia and boreal forests in North America and Eurasia. In other areas, however, we observed many active fires outside of burned area perimeters. Fire radiative power was lower for this class of active fires. Small fires substantially increased burned area in several continental-scale regions, including Equatorial Asia (157%), Central America (143%), and Southeast Asia (90%) during 2001-2010. Globally, accounting for small fires increased total burned area by approximately by 35%, from 345 Mha/yr to 464 Mha/yr. A formal quantification of uncertainties was not possible, but sensitivity analyses of key model parameters caused estimates of global burned area increases from small fires to vary between 24% and 54%. Biomass burning carbon emissions increased by 35% at a global scale when small fires were included in GFED3, from 1.9 Pg C/yr to 2.5 Pg C/yr. The contribution of tropical forest fires to year-to-year variability in carbon fluxes increased because small fires amplified emissions from Central America, South America and Southeast Asia—regions where drought stress and burned area varied considerably from year to year in response to El Nino-Southern Oscillation and other climate modes.

  3. Establishment of a database of emission factors for atmospheric pollutants from Chinese coal-fired power plants

    NASA Astrophysics Data System (ADS)

    Zhao, Yu; Wang, Shuxiao; Nielsen, Chris P.; Li, Xinghua; Hao, Jiming

    2010-04-01

    Field measurements and data investigations were conducted for developing an emission factor database for inventories of atmospheric pollutants from Chinese coal-fired power plants. Gaseous pollutants and particulate matter (PM) of different size fractions were measured using a gas analyzer and an electric low-pressure impactor (ELPI), respectively, for ten units in eight coal-fired power plants across the country. Combining results of field tests and literature surveys, emission factors with 95% confidence intervals (CIs) were calculated by boiler type, fuel quality, and emission control devices using bootstrap and Monte Carlo simulations. The emission factor of uncontrolled SO 2 from pulverized combustion (PC) boilers burning bituminous or anthracite coal was estimated to be 18.0S kg t -1 (i.e., 18.0 × the percentage sulfur content of coal, S) with a 95% CI of 17.2S-18.5S. NO X emission factors for pulverized-coal boilers ranged from 4.0 to 11.2 kg t -1, with uncertainties of 14-45% for different unit types. The emission factors of uncontrolled PM 2.5, PM 10, and total PM emitted by PC boilers were estimated to be 0.4A (where A is the percentage ash content of coal), 1.5A and 6.9A kg t -1, respectively, with 95% CIs of 0.3A-0.5A, 1.1A-1.9A and 5.8A-7.9A. The analogous PM values for emissions with electrostatic precipitator (ESP) controls were 0.032A (95% CI: 0.021A-0.046A), 0.065A (0.039A-0.092A) and 0.094A (0.0656A-0.132A) kg t -1, and 0.0147A (0.0092-0.0225A), 0.0210A (0.0129A-0.0317A), and 0.0231A (0.0142A-0.0348A) for those with both ESP and wet flue-gas desulfurization (wet-FGD). SO 2 and NO X emission factors for Chinese power plants were smaller than those of U.S. EPA AP-42 database, due mainly to lower heating values of coals in China. PM emission factors for units with ESP, however, were generally larger than AP-42 values, because of poorer removal efficiencies of Chinese dust collectors. For units with advanced emission control technologies, more field measurements are needed to reduce emission factor uncertainties.

  4. IMPROVING EMISSIONS ESTIMATES WITH COMPUTATIONAL INTELLIGENCE, DATABASE EXPANSION, AND COMPREHENSIVE VALIDATION

    EPA Science Inventory

    The report discusses an EPA investigation of techniques to improve methods for estimating volatile organic compound (VOC) emissions from area sources. Using the automobile refinishing industry for a detailed area source case study, an emission estimation method is being developed...

  5. Interannual variability of carbon monoxide emission estimates over South America from 2006 to 2010

    NASA Astrophysics Data System (ADS)

    Hooghiemstra, P. B.; Krol, M. C.; van Leeuwen, T. T.; van der Werf, G. R.; Novelli, P. C.; Deeter, M. N.; Aben, I.; Röckmann, T.

    2012-08-01

    We present the first inverse modeling study to estimate CO emissions constrained by both surface and satellite observations. Our 4D-Var system assimilates National Oceanic and Atmospheric Administration Earth System Research Laboratory (NOAA/ESRL) Global Monitoring Division (GMD) surface and Measurements Of Pollution In The Troposphere (MOPITT) satellite observations jointly by fitting a bias correction scheme. This approach leads to the identification of a positive bias of maximum 5 ppb in MOPITT column-averaged CO mixing ratios in the remote Southern Hemisphere (SH). The 4D-Var system is used to estimate CO emissions over South America in the period 2006-2010 and to analyze the interannual variability (IAV) of these emissions. We infer robust, high spatial resolution CO emission estimates that show slightly smaller IAV due to fires compared to the Global Fire Emissions Database (GFED3) prior emissions. South American dry season (August and September) biomass burning emission estimates amount to 60, 92, 42, 16 and 93 Tg CO/yr for 2006 to 2010, respectively. Moreover, CO emissions probably associated with pre-harvest burning of sugar cane plantations in São Paulo state are underestimated in current inventories by 50-100%. We conclude that climatic conditions (such as the widespread drought in 2010) seem the most likely cause for the IAV in biomass burning CO emissions. However, socio-economic factors (such as the growing global demand for soy, beef and sugar cane ethanol) and associated deforestation fires, are also likely as drivers for the IAV of CO emissions, but are difficult to link directly to CO emissions.

  6. The development of a new database of gas emissions in Italy: a collaborative web environment for collecting and publishing data on natural gas emissions

    NASA Astrophysics Data System (ADS)

    Cardellini, C.; Frigeri, A.; Frondini, F.; Chiodini, G.

    2010-12-01

    In spite of the large extension of the Earth degassing process and of the correlations with geodynamic processes and large scale geochemical processes, the Earth degassing process in the world is still poorly known. Beside the scientific interest on studying gas emissions, a better knowledge of the degassing process is crucial for mitigate gas hazard correlated to the release of dangerous gases (e.g., CO2, H2S) from natural emissions, that, like in Italy, caused many lethal accidents to animals and humans. After years of data collection organized on a base of a single research group, institution, or project, there is clearly a need for common frameworks that allow to aggregate data in order to observe the phenomena at various scale. The development of Googas in 2007 (Chiodini et al., 2008), funded by the Italian Civil Defence and focused on the serialization of data and the publication of a web map of gas emissions, was the first attempt to create a collaborative database on gas emissions. Googas, that represented an important advance in the knowledge of the phenomenon at the national scale, is however a static representation of the results of the project. Starting from the Googas experience, we are now extending the capabilities of Googas on the user side, developing a new web environment for collecting and publishing data of gas natural emissions dynamically. The collaborative environment allows researchers from different institutions to collect data in the most seamless way, and data to be published directly from within the same system. The web interface allows to insert data interactively into a spatially referred relational database management system. Moreover, researchers are aware of the activity of the others and can access data, leave comments as soon as data is being inserted. This new system aims to excite, inspire, and encourage participation among researchers. As gas emissions are inherently referred to geographic locations, published digital data will be available in several formats, including the ones conformant to Open Gis Consortium (OGC) standards, for an easy access by using Geographical Information Systems (GIS). The publication of data on the website will be ruled by a licensing system that facilitates and encourages the scientific method processes. The license will allow to use and distribute the data, to produce works from the data and to build up new data from it, as long as these rules are maintained and the attribution to the original work is being referred. In this way, the efforts to publish the data are balanced by the guarantees that the data's access will remain open. This new database of Italian gas emissions is an interesting environment where researchers can insert data in a common interface asynchronously and the results are immediately tangible. The development of this project is undergoing and researchers and developers interact closely, introducing and testing new features during the development phase. We believe that the development of this new environment represent a starting point towards the foundation of a collaborative database of gas emissions at global scale.

  7. Testing the Hole-in-the-Pipe Model of nitric and nitrous oxide emissions from soils using the TRAGNET Database

    NASA Astrophysics Data System (ADS)

    Davidson, Eric A.; Verchot, Louis V.

    2000-12-01

    Because several soil properties and processes affect emissions of nitric oxide (NO) and nitrous oxide (N2O) from soils, it has been difficult to develop effective and robust algorithms to predict emissions of these gases in biogeochemical models. The conceptual "hole-in-the-pipe" (HIP) model has been used effectively to interpret results of numerous studies, but the ranges of climatic conditions and soil properties are often relatively narrow for each individual study. The Trace Gas Network (TRAGNET) database offers a unique opportunity to test the validity of one manifestation of the HIP model across a broad range of sites, including temperate and tropical climates, grasslands and forests, and native vegetation and agricultural crops. The logarithm of the sum of NO + N2O emissions was positively and significantly correlated with the logarithm of the sum of extractable soil NH4+ + NO3-. The logarithm of the ratio of NO:N2O emissions was negatively and significantly correlated with water-filled pore space (WFPS). These analyses confirm the applicability of the HIP model concept, that indices of soil N availability correlate with the sum of NO+N2O emissions, while soil water content is a strong and robust controller of the ratio of NO:N2O emissions. However, these parameterizations have only broad-brush accuracy because of unaccounted variation among studies in the soil depths where gas production occurs, where soil N and water are measured, and other factors. Although accurate predictions at individual sites may still require site-specific parameterization of these empirical functions, the parameterizations presented here, particularly the one for WFPS, may be appropriate for global biogeochemical modeling. Moreover, this integration of data sets demonstrates the broad ranging applicability of the HIP conceptual approach for understanding soil emissions of NO and N2O.

  8. Biomass burning fuel consumption rates: a field measurement database

    NASA Astrophysics Data System (ADS)

    van Leeuwen, T. T.; van der Werf, G. R.; Hoffmann, A. A.; Detmers, R. G.; Rücker, G.; French, N. H. F.; Archibald, S.; Carvalho, J. A., Jr.; Cook, G. D.; de Groot, W. J.; Hély, C.; Kasischke, E. S.; Kloster, S.; McCarty, J. L.; Pettinari, M. L.; Savadogo, P.; Alvarado, E. C.; Boschetti, L.; Manuri, S.; Meyer, C. P.; Siegert, F.; Trollope, L. A.; Trollope, W. S. W.

    2014-06-01

    Landscape fires show large variability in the amount of biomass or fuel consumed per unit area burned. These fuel consumption (FC) rates depend on the biomass available to burn and the fraction of the biomass that is actually combusted, and can be combined with estimates of area burned to assess emissions. While burned area can be detected from space and estimates are becoming more reliable due to improved algorithms and sensors, FC rates are either modeled or taken selectively from the literature. We compiled the peer-reviewed literature on FC rates for various biomes and fuel categories to better understand FC rates and variability, and to provide a~database that can be used to constrain biogeochemical models with fire modules. We compiled in total 76 studies covering 10 biomes including savanna (15 studies, average FC of 4.6 t DM (dry matter) ha-1), tropical forest (n = 19, FC = 126), temperate forest (n = 11, FC = 93), boreal forest (n = 16, FC = 39), pasture (n = 6, FC = 28), crop residue (n = 4, FC = 6.5), chaparral (n = 2, FC = 32), tropical peatland (n = 4, FC = 314), boreal peatland (n = 2, FC = 42), and tundra (n = 1, FC = 40). Within biomes the regional variability in the number of measurements was sometimes large, with e.g. only 3 measurement locations in boreal Russia and 35 sites in North America. Substantial regional differences were found within the defined biomes: for example FC rates of temperate pine forests in the USA were 38% higher than Australian forests dominated by eucalypt trees. Besides showing the differences between biomes, FC estimates were also grouped into different fuel classes. Our results highlight the large variability in FC rates, not only between biomes but also within biomes and fuel classes. This implies that care should be taken with using averaged values, and our comparison with FC rates from GFED3 indicates that also modeling studies have difficulty in representing the dynamics governing FC.

  9. A USA Commercial Flight Track Database for Upper Tropospheric Aircraft Emission Studies

    NASA Technical Reports Server (NTRS)

    Garber, Donald P.; Minnis, Patrick; Costulis, Kay P.

    2003-01-01

    A new air traffic database over the contiguous United States of America (USA) has been developed from a commercially available real-time product for 2001-2003 for all non-military flights above 25,000 ft. Both individual flight tracks and gridded spatially integrated flight legs are available. On average, approximately 24,000 high-altitude flights were recorded each day. The diurnal cycle of air traffic over the USA is characterized by a broad daytime maximum with a 0130-LT minimum and a mean day-night air traffic ratio of 2.4. Each week, the air traffic typically peaks on Thursday and drops to a low Saturday with a range of 18%. Flight density is greatest during late summer and least during winter. The database records the disruption of air traffic after the air traffic shutdown during September 2001. The dataset should be valuable for realistically simulating the atmospheric effects of aircraft in the upper troposphere.

  10. CHIANTI-AN ATOMIC DATABASE FOR EMISSION LINES. XIII. SOFT X-RAY IMPROVEMENTS AND OTHER CHANGES

    SciTech Connect

    Landi, E.; Young, P. R.; Dere, K. P.; Del Zanna, G.; Mason, H. E.

    2013-02-15

    The CHIANTI spectral code consists of two parts: an atomic database and a suite of computer programs in Python and IDL. Together, they allow the calculation of the optically thin spectrum of astrophysical objects and provide spectroscopic plasma diagnostics for the analysis of astrophysical spectra. The database includes atomic energy levels, wavelengths, radiative transition probabilities, collision excitation rate coefficients, ionization, and recombination rate coefficients, as well as data to calculate free-free, free-bound, and two-photon continuum emission. Version 7.1 has been released, which includes improved data for several ions, recombination rates, and element abundances. In particular, it provides a large expansion of the CHIANTI models for key Fe ions from Fe VIII to Fe XIV to improve the predicted emission in the 50-170 A wavelength range. All data and programs are freely available at http://www.chiantidatabase.org and in SolarSoft, while the Python interface to CHIANTI can be found at http://chiantipy.sourceforge.net.

  11. Getting the most from your AQUIS database for air emission inventories

    SciTech Connect

    Alex, G.S.; Rasmussen, S.; Monarch, M.

    1995-07-01

    During the early 1990s, air quality managers at Hill Air Force Base (Hill) in Ogden, Utah saw the number of emission sources they were required to track escalating rapidly to over. 1,200. They felt the only way to effectively manage the associated data was using an electronic system. The US Air Force Material Command had just developed the Air Quality Utility Information System (AQUIS), as a means of helping bases manage their air emission sources. As Hill experimented with the system, it became evident that the air quality staff did not have the time and resources to keep the system updated. Hill determined that if they hired a contractor to become intimately familiar with AQUIS, they could receive on-going support without constantly retraining new full-time staff and AQUIS could become a valuable tool in managing its emission sources. In this way, Hill was able to manage the effort, while placing the responsibility for a cost effective, quality product on dedicated specialists. The contractor was asked to: (1) to find an efficient, cost effective method for collecting and entering data into AQUIS; (2) to determine whether the AQUIS emission algorithms and factors were appropriate for all of Hill`s sources; (3) if AQUIS did not have the capability to calculate emissions for some sources, to change the system or prepare supplementary spreadsheets for future inventories, until AQUIS generated the appropriate emissions; (4) to figure out a flexible method for generating the needed information from AQUIS for in-house and regulatory reporting, and (5) coordinate these efforts with the system development contractor (Argonne National Laboratory (ANL)) to limit duplication of effort. This paper discusses some of the methods the contractor used to achieve the goals set by Hill. The reader will be introduced to some methods that go beyond what AQUIS is currently designed to do.

  12. HITEMP derived spectral database for the prediction of jet engine exhaust infrared emission using a statistical band model

    NASA Astrophysics Data System (ADS)

    Lindermeir, E.; Beier, K.

    2012-08-01

    The spectroscopic database HITEMP 2010 is used to upgrade the parameters of the statistical molecular band model which is part of the infrared signature prediction code NIRATAM (NATO InfraRed Air TArget Model). This band model was recommended by NASA and is applied in several codes that determine the infrared emission of combustion gases. The upgrade regards spectral absorption coefficients and line densities of the gases H2O, CO2, and CO in the spectral region 400-5000 cm-1 (2-25μm) with a spectral resolution of 5 cm-1. The temperature range 100-3000 K is covered. Two methods to update the database are presented: the usually applied method as provided in the literature and an alternative, more laborious procedure that employs least squares fitting. The achieved improvements resulting from both methods are demonstrated by comparisons of radiance spectra obtained from the band model to line-by-line results. The performance in a realistic scenario is investigated on the basis of measured and predicted spectra of a jet aircraft plume in afterburner mode.

  13. Biomass burning fuel consumption rates: a field measurement database

    NASA Astrophysics Data System (ADS)

    van Leeuwen, T. T.; van der Werf, G. R.; Hoffmann, A. A.; Detmers, R. G.; Rücker, G.; French, N. H. F.; Archibald, S.; Carvalho, J. A., Jr.; Cook, G. D.; de Groot, W. J.; Hély, C.; Kasischke, E. S.; Kloster, S.; McCarty, J. L.; Pettinari, M. L.; Savadogo, P.; Alvarado, E. C.; Boschetti, L.; Manuri, S.; Meyer, C. P.; Siegert, F.; Trollope, L. A.; Trollope, W. S. W.

    2014-12-01

    Landscape fires show large variability in the amount of biomass or fuel consumed per unit area burned. Fuel consumption (FC) depends on the biomass available to burn and the fraction of the biomass that is actually combusted, and can be combined with estimates of area burned to assess emissions. While burned area can be detected from space and estimates are becoming more reliable due to improved algorithms and sensors, FC is usually modeled or taken selectively from the literature. We compiled the peer-reviewed literature on FC for various biomes and fuel categories to understand FC and its variability better, and to provide a database that can be used to constrain biogeochemical models with fire modules. We compiled in total 77 studies covering 11 biomes including savanna (15 studies, average FC of 4.6 t DM (dry matter) ha-1 with a standard deviation of 2.2), tropical forest (n = 19, FC = 126 ± 77), temperate forest (n = 12, FC = 58 ± 72), boreal forest (n = 16, FC = 35 ± 24), pasture (n = 4, FC = 28 ± 9.3), shifting cultivation (n = 2, FC = 23, with a range of 4.0-43), crop residue (n = 4, FC = 6.5 ± 9.0), chaparral (n = 3, FC = 27 ± 19), tropical peatland (n = 4, FC = 314 ± 196), boreal peatland (n = 2, FC = 42 [42-43]), and tundra (n = 1, FC = 40). Within biomes the regional variability in the number of measurements was sometimes large, with e.g. only three measurement locations in boreal Russia and 35 sites in North America. Substantial regional differences in FC were found within the defined biomes: for example, FC of temperate pine forests in the USA was 37% lower than Australian forests dominated by eucalypt trees. Besides showing the differences between biomes, FC estimates were also grouped into different fuel classes. Our results highlight the large variability in FC, not only between biomes but also within biomes and fuel classes. This implies that substantial uncertainties are associated with using biome-averaged values to represent FC for whole biomes. Comparing the compiled FC values with co-located Global Fire Emissions Database version 3 (GFED3) FC indicates that modeling studies that aim to represent variability in FC also within biomes, still require improvements as they have difficulty in representing the dynamics governing FC.

  14. Influence of daily versus monthly fire emissions on atmospheric model applications in the tropics

    NASA Astrophysics Data System (ADS)

    Marlier, M. E.; Voulgarakis, A.; Faluvegi, G.; Shindell, D. T.; DeFries, R. S.

    2012-12-01

    Fires are widely used throughout the tropics to create and maintain areas for agriculture, but are also significant contributors to atmospheric trace gas and aerosol concentrations. However, the timing and magnitude of fire activity can vary strongly by year and ecosystem type. For example, frequent, low intensity fires dominate in African savannas whereas Southeast Asian peatland forests are susceptible to huge pulses of emissions during regional El Niño droughts. Despite the potential implications for modeling interactions with atmospheric chemistry and transport, fire emissions have commonly been input into global models at a monthly resolution. Recognizing the uncertainty that this can introduce, several datasets have parsed fire emissions to daily and sub-daily scales with satellite active fire detections. In this study, we explore differences between utilizing the monthly and daily Global Fire Emissions Database version 3 (GFED3) products as inputs into the NASA GISS-E2 composition climate model. We aim to understand how the choice of the temporal resolution of fire emissions affects uncertainty with respect to several common applications of global models: atmospheric chemistry, air quality, and climate. Focusing our analysis on tropical ozone, carbon monoxide, and aerosols, we compare modeled concentrations with available ground and satellite observations. We find that increasing the temporal frequency of fire emissions from monthly to daily can improve correlations with observations, predominately in areas or during seasons more heavily affected by fires. Differences between the two datasets are more evident with public health applications: daily resolution fire emissions increases the number of days exceeding World Health Organization air quality targets.

  15. High-Resolution Spatially Gridded Biomass Burning Emissions Inventory In Asia

    NASA Astrophysics Data System (ADS)

    Vadrevu, K. P.; Lau, W. K.; da Silva, A.; Justice, C. O.

    2012-12-01

    Biomass burning is long recognized an important source of greenhouse gas (GHG) emissions (CO2, CO, CH4, H2, CH3Cl, NO, HCN, CH3CN, COS, etc) and aerosols. In the Asian region, the current estimates of greenhouse gas emissions and aerosols from biomass burning are severely constrained by the lack of reliable statistics on fire distribution and frequency, and the lack of accurate estimates of area burned, fuel load, etc. As a part of NASA funded interdisciplinary research project entitled "Effects of biomass burning on water cycle and climate in the monsoon Asia", we initially developed a high resolution spatially gridded emissions inventory from the biomass burning for Indo-Ganges region and then extended the inventory to the entire Asia. Active fires from MODIS as well as high resolution LANDSAT data have been used to fine-tune the MODIS burnt area products for estimating the emissions. Locally based emission factors were used to refine the gaseous emissions. The resulting emissions data has been gridded at 5-minute intervals. We also compared our emission estimates with the other emission products such as Global Fire Assimilation System (GFAS), Quick fire emissions database (QFED) and Global Fire Emissions Database (GFED). Our results revealed significant vegetation fires from Myanmar, India, Indonesia, China, Laos, Thailand, Cambodia and Vietnam. These seven countries accounted for 92.4% of all vegetation fires in the Asian region. Satellite-based vegetation fire analysis showed the highest fire occurrence in the closed to open shrub land category, (19%) followed by closed to open, broadleaved evergreen-semi deciduous forest (16%), rain fed croplands (17%), post flooded or irrigated croplands (12%), mosaic cropland vegetation (11%), mosaic vegetation/cropland (10%). Emission contribution from agricultural fires was significant, however, showed discrepancies due to low confidence in burnt areas and lack of crop specific emission factors. Further, our results suggest that FRP products underestimate emissions from agriculture fires compared to burnt area products. Details on uncertainties in emission estimates from biomass burning in Asia will also be presented.

  16. Development of a Reference Database for Particle-Induced Gamma-ray Emission spectroscopy

    NASA Astrophysics Data System (ADS)

    Dimitriou, P.; Becker, H.-W.; Bogdanović-Radović, I.; Chiari, M.; Goncharov, A.; Jesus, A. P.; Kakuee, O.; Kiss, A. Z.; Lagoyannis, A.; Räisänen, J.; Strivay, D.; Zucchiatti, A.

    2016-03-01

    Particle-Induced Gamma-ray Emission (PIGE) is a powerful analytical technique that exploits the interactions of rapid charged particles with nuclei located near a sample surface to determine the composition and structure of the surface regions of solids by measurement of characteristic prompt γ rays. The potential for depth profiling of this technique has long been recognized, however, the implementation has been limited owing to insufficient knowledge of the physical data and lack of suitable user-friendly computer codes for the applications. Although a considerable body of published data exists in the nuclear physics literature for nuclear reaction cross sections with γ rays in the exit channel, there is no up-to-date, comprehensive compilation specifically dedicated to IBA applications. A number of PIGE cross-section data had already been uploaded to the Ion Beam Analysis Nuclear Data Library (IBANDL)

  17. INFERNO, a simple approach for interactive fires and their emissions within the Met Office Unified Model

    NASA Astrophysics Data System (ADS)

    Mangeon, Stephane; Voulgarakis, Apostolos; Folberth, Gerd

    2015-04-01

    Forest fires remain a crucial element of the Earth system, affecting and affected by the biosphere and the atmosphere. In particular emissions of trace gases (CO2, CO, NOx...) from forest fires can affect radiative forcing as well as atmospheric composition, similarly aerosols such as Black Carbon (also a strong sunlight absorber) and Organic Carbon emitted by fires can participate in cloud droplet nucleation, contributing to the aerosol indirect effect. Global estimates of fire emissions have greatly improved over the last decade, mainly through the developments in satellite observations. However, such estimates remain constrained to the recent satellite observational period; to study fires under past and future climates one has to resort to models. We will present the INteractive Fire and Emission algoRithm for Natural envirOnments (INFERNO) scheme for the Met Office's Unified Model, which builds on previous work for the GISS climate model. We start from simulated fire counts using proxies for flammability (meteorology and vegetation), ignitions and fire suppression. We then extend this parameterisation to predict burnt area, burnt biomass and subsequent emissions. This climate-sensitive parameterisation utilises temperature, relative humidity, precipitation and vegetation modelling (biomass and leaf area index) to model flammability. Ignitions depend on population density and lightning strikes. Of all these variables, only population density needs to be prescribed, hence INFERNO can be run interactively within a coupled earth system model. Our approach is also distinct owing to its simplicity and is computationally inexpensive, a necessary characteristic as it is aimed to run interactively over climatological timescales. The performance of this scheme is assessed against the Global Fire Emissions Database (GFED); early analysis shows this new approach effectively captures the spatial and inter-annual variability of burnt area and fire emissions of CO2 and CO over the 2003-2011 present-day period. We will also provide early estimates of the sensitivity of fires in our model to meteorology.

  18. Improved temporal constraints on and vertical injections of biomass burning emissions: Implications on global aerosol simulation

    NASA Astrophysics Data System (ADS)

    Chen, Y.; Li, Q.; Randerson, J.; Lyons, E.; Nelson, D.; Diner, D.; Kahn, R.

    2007-12-01

    Biomass burning from wild fires is a major source of air pollutants including aerosols and some other climate forcing agents. Biomass burning emissions are typically prescribed on a monthly base in most global chemistry and transport models (CTMs). We investigated the sensitivity of global aerosol transport and distribution to the diurnal cycle, synoptic variability, and vertical injection height of biomass burning emissions. Global simulations of aerosols were conducted using the GEOS-Chem global 3-D chemistry and transport model for summer 2004, with the aforementioned constraints imposed on the 8-day Global Fire Emissions Database (GFED v2). The diurnal cycle was determined using active fire data. The synoptic variability, which depends on temperature, relative humidity, and wind speed, was derived from a fire model. The injection height was derived from MISR smoke plume stereoheights. Model results, with monthly or 8-day (with or without the additional constraints) biomass burning emissions, were compared with aerosol optical depths (AOD) from MISR/MODIS/OMI and the AERONET network, and (mass) concentrations from the IMPROVE network and the INTEX-NA aircraft campaign. Using 8-day instead of monthly biomass burning emissions significantly improves the comparison of mass concentrations of BC, OC, and sulfate with observations. The inclusion of diurnal cycle, synoptic variability, and vertical injection height in the 8-day biomass burning emission inventory lead to more efficient transport of aerosols out of the boundary layer, resulting in lower aerosol loadings over the biomass burning source regions and higher loadings downwind, compared with simulations with monthly inventory. The inclusion of the additional constraints also reduces the discrepancies, both in magnitude and daily variability, between observed and simulated aerosol optical depths (AODs), especially downwind of the biomass burning source regions.

  19. Precipitation - fire linkages and variability in continental-scale fire carbon emissions

    NASA Astrophysics Data System (ADS)

    van der Werf, G.; Andela, N.; Randerson, J. T.

    2014-12-01

    The link between drought and fire is not universal because for fires to occur rainfall is needed for fuel build-up but drought is required to make vegetation ignitable. We present an overview of how precipitation patterns and changes therein have shaped spatial and temporal variability in fire occurrence and associated carbon emissions over the past 17 years, using the latest version of the satellite-derived Global Fire Emissions Database (GFED4). We start in tropical savannas where there is a clear dualistic relation between precipitation and fire and show how trends and interannual variability in rainfall have modified annual emissions in Africa and Australia. Because savannas are the main source of fire carbon emissions, this variability can be seen in atmospheric abundances of several trace gases. We then zoom in on tropical forest regions and show that the link between drought and fire activity is most pronounced in the Indonesian archipelago where tropical peatlands require prolonged droughts to burn. Highest emissions occurred there in 1997-1998 when a strong El Niño hit the region, but also moderate drought years have boosted fire activity here more recently. Recent Amazonian droughts in 2005, 2007, and 2010 also led to increased fire activity in forested regions in South America, mostly in degraded lands and offsetting some of the reductions in carbon emissions from deforestation achieved in Brazil. Finally we focus on the boreal region, where potentially large climate-carbon feedbacks are present due to the strong linkages between drought and fire in combination with climate change and arctic amplification.

  20. The Alaskan Fire Emissions Database (AKFED): analysis of environmental controls on daily fire emissions and comparison with atmospheric trace gas measurements

    NASA Astrophysics Data System (ADS)

    Veraverbeke, S.; Rogers, B. M.; Wiggins, E. B.; Randerson, J. T.

    2014-12-01

    We present a spatially and temporally explicit analysis of burned area and fire carbon emissions in Alaska using a time series with ~500 m spatial resolution and daily temporal resolution between 2001 and 2012. Daily burned area was mapped using perimeter data from the Alaskan Large Fire Database, and imagery from MODIS. 33 % of the area within perimeters was mapped as unburned by differenced Normalized Burn Ratio (dNBR) screening. We built a non-linear multiplicative model to predict carbon consumption as a response of different environmental variables based on relationships with field data. The environmental variables included in the model were elevation, time of burning, tree cover and dNBR. The interaction between elevation and time of burning was crucial in modelling belowground consumption. Higher consumption estimates occurred later in the season and at intermediate elevations. Additional explanatory power and better representation of the spatial heterogeneity was achieved by including tree cover and dNBR. We found a clear relationship between dNBR and depth of burn from field measurements. The relationships between belowground consumption, and dNBR and tree cover, suggest a direct relationship between the amount of consumption of below- and aboveground biomass, with the highest consumption occurring at plots with dense black spruce cover. In our spatio-temporal domain, we found an overall median consumption of 2.26 kg C m-2, which included significant amounts of burning in cover types other than black spruce, and 2.71 kg C m-2 when only pure black spruce pixels were considered. These values were lower than the median value observed in the field data and suggest that available field data is biased toward high consumption. Our analysis stresses the importance of accounting for the spatial heterogeneity within fuels and consumption when extrapolating emissions in space and time. Data on daily burned area and emissions could be of further use for assessing fire impacts on atmospheric trace gas composition and in characterizing environmental controls on fire growth. Emission estimates of the 2013 fire season were input into an aerosol transport model and modeled CO2 concentrations were compared with measurements from NASA's CARVE mission during fire-affected days.

  1. Evaluation of Tropical Biomass Burning Emissions using a Global Aerosol Model: Implications for Climate and Air Quality

    NASA Astrophysics Data System (ADS)

    Reddington, C.; Spracklen, D. V.; Rap, A.; Artaxo, P.; Rizzo, L. V.; Arana, A.; Ridley, D. A.; Morgan, W.; Coe, H.; Toh, Y. Y.; Carslaw, K. S.; Mann, G.

    2014-12-01

    Tropical biomass burning (BB) emissions are a major global source of particulate matter (PM). However, high temporal and spatial variability in the emissions lead to major challenges for their quantification and representation in models. Previous modelling studies have found a persistent underestimation of aerosol optical depth (AOD) observed in BB regions, requiring fire emissions of PM to be scaled by a factor of ~2-5 to match observations. Here we evaluate a global aerosol microphysics model (GLOMAP) against long-term in-situ observations of PM and black carbon in Amazonia and SE Asia, in addition to AOD, to better understand tropical BB aerosol and improve estimates of the impact of BB on air quality and climate. We performed simulations with GLOMAP for the period 1997-2012 using three different BB emission inventories: GFED3, GFASv1.0 and FINNv1. We find that in N.E. Brazil the model with GFED emissions is unable to capture the magnitude and seasonal variability in observed PM (R2=0.3, bias = -44%), even when emissions are scaled up by a factor of 3.4 (R2=0.3, bias = -26%). This is likely due to an omission of small fires in the GFED3 emissions. Agreement between model and observations in this location is improved by using an active fire based emission inventory (e.g. FINN, R2=0.6, bias = -7%), which better captures emissions from small-scale agricultural fires. Comparisons with all collected observations in SE Asia and Amazonia show that the model captures the inter-annual and seasonal cycles of monthly mean PM (mean R2 GFED, 0.6; GFAS, 0.7; FINN, 0.6) and AERONET AOD (mean R2 GFED, 0.6; GFAS, 0.7; FINN, 0.8) reasonably well. However, the model is generally negatively biased for both PM and AOD, the smallest bias being with the FINN emission inventory. By scaling FINN emissions up by 50% (much less than found from previous studies using only AOD), we find that we can adequately capture the magnitude of dry season PM across Amazonia and AOD in SE Asia. To capture the magnitude of AOD in Amazonia an additional scaling factor may need to be applied to FINN emissions injected above the surface. To evaluate the vertical profile of modelled BB aerosol we use aircraft observations from the SAMBBA field campaign. Overall, our results could have important implications for quantifying the air quality and climate effects of BB aerosol.

  2. Global fire emissions and the contribution of deforestation, savanna, forest, agricultural, and peat fires (1997-2009)

    NASA Astrophysics Data System (ADS)

    van der Werf, G. R.; Randerson, J. T.; Giglio, L.; Collatz, G. J.; Mu, M.; Kasibhatla, P. S.; Morton, D. C.; Defries, R. S.; Jin, Y.; van Leeuwen, T. T.

    2010-12-01

    New burned area datasets and top-down constraints from atmospheric concentration measurements of pyrogenic gases have decreased the large uncertainty in fire emissions estimates. However, significant gaps remain in our understanding of the contribution of deforestation, savanna, forest, agricultural waste, and peat fires to total global fire emissions. Here we used a revised version of the Carnegie-Ames-Stanford-Approach (CASA) biogeochemical model and improved satellite-derived estimates of area burned, fire activity, and plant productivity to calculate fire emissions for the 1997-2009 period on a 0.5° spatial resolution with a monthly time step. For November 2000 onwards, estimates were based on burned area, active fire detections, and plant productivity from the MODerate resolution Imaging Spectroradiometer (MODIS) sensor. For the partitioning we focused on the MODIS era. We used maps of burned area derived from the Tropical Rainfall Measuring Mission (TRMM) Visible and Infrared Scanner (VIRS) and Along-Track Scanning Radiometer (ATSR) active fire data prior to MODIS (1997-2000) and estimates of plant productivity derived from Advanced Very High Resolution Radiometer (AVHRR) observations during the same period. Average global fire carbon emissions according to this version 3 of the Global Fire Emissions Database (GFED3) were 2.0 Pg C year-1 with significant interannual variability during 1997-2001 (2.8 Pg C year-1 in 1998 and 1.6 Pg C year-1 in 2001). Globally, emissions during 2002-2007 were relatively constant (around 2.1 Pg C year-1) before declining in 2008 (1.7 Pg C year-1) and 2009 (1.5 Pg C year-1) partly due to lower deforestation fire emissions in South America and tropical Asia. On a regional basis, emissions were highly variable during 2002-2007 (e.g., boreal Asia, South America, and Indonesia), but these regional differences canceled out at a global level. During the MODIS era (2001-2009), most carbon emissions were from fires in grasslands and savannas (44%) with smaller contributions from tropical deforestation and degradation fires (20%), woodland fires (mostly confined to the tropics, 16%), forest fires (mostly in the extratropics, 15%), agricultural waste burning (3%), and tropical peat fires (3%). The contribution from agricultural waste fires was likely a lower bound because our approach for measuring burned area could not detect all of these relatively small fires. Total carbon emissions were on average 13% lower than in our previous (GFED2) work. For reduced trace gases such as CO and CH4, deforestation, degradation, and peat fires were more important contributors because of higher emissions of reduced trace gases per unit carbon combusted compared to savanna fires. Carbon emissions from tropical deforestation, degradation, and peatland fires were on average 0.5 Pg C year-1. The carbon emissions from these fires may not be balanced by regrowth following fire. Our results provide the first global assessment of the contribution of different sources to total global fire emissions for the past decade, and supply the community with an improved 13-year fire emissions time series.

  3. Constraining CO emission estimates using atmospheric observations

    NASA Astrophysics Data System (ADS)

    Hooghiemstra, P. B.

    2012-06-01

    We apply a four-dimensional variational (4D-Var) data assimilation system to optimize carbon monoxide (CO) emissions and to reduce the uncertainty of emission estimates from individual sources using the chemistry transport model TM5. In the first study only a limited amount of surface network observations from the National Oceanic and Atmospheric Administration Earth System Research Laboratory (NOAA/ESRL) Global Monitoring Division (GMD) is used to test the 4D-Var system. Uncertainty reduction up to 60% in yearly emissions is observed over well-constrained regions and the inferred emissions compare well with recent studies for 2004. However, since the observations only constrain total CO emissions, the 4D-Var system has difficulties separating anthropogenic and biogenic sources in particular. The inferred emissions are validated with NOAA aircraft data over North America and the agreement is significantly improved from the prior to posterior simulation. Validation with the Measurements Of Pollution In The Troposphere (MOPITT) instrument shows a slight improved agreement over the well-constrained Northern Hemisphere and in the tropics (except for the African continent). However, the model simulation with posterior emissions underestimates MOPITT CO total columns on the remote Southern Hemisphere (SH) by about 10%. This is caused by a reduction in SH CO sources mainly due to surface stations on the high southern latitudes. In the second study, we compare two global inversions to estimate carbon monoxide (CO) emissions for 2004. Either surface flask observations from NOAA or CO total columns from the MOPITT instrument are assimilated in a 4D-Var framework. In the Southern Hemisphere (SH) three important findings are reported. First, due to their different vertical sensitivity, the stations-only inversion increases SH biomass burning emissions by 108 Tg CO/yr more than the MOPITT-only inversion. Conversely, the MOPITT-only inversion results in SH natural emissions (mainly CO from oxidation of NMVOCs) that are 185 Tg CO/yr higher compared to the stations-only inversion. Second, MOPITT-only derived biomass burning emissions are reduced with respect to the prior which is in contrast to previous (inverse) modeling studies. Finally, MOPITT derived total emissions are significantly higher for South America and Africa compared to the stations-only inversion. This is likely due to a positive bias in the MOPITT V4 product. This bias is also apparent from validation with surface stations and ground-truth FTIR columns. In the final study we present the first inverse modeling study to estimate CO emissions constrained by both surface (NOAA) and satellite (MOPITT) observations using a bias correction scheme. This approach leads to the identification of a positive bias of maximum 5 ppb in MOPITT column-averaged CO mixing ratios in the remote Southern Hemisphere (SH). The 4D-Var system is used to estimate CO emissions over South America in the period 2006-2010 and to analyze the interannual variability (IAV) of these emissions. We infer robust, high spatial resolution CO emission estimates that show slightly smaller IAV due to fires compared to the Global Fire Emissions Database (GFED3) prior emissions. Moreover, CO emissions probably associated with pre-harvest burning of sugar cane plantations are underestimated in current inventories by 50-100%.

  4. Multi-model estimates of fire emissions and air quality degradation in Southeast Asia

    NASA Astrophysics Data System (ADS)

    Marlier, M. E.; DeFries, R. S.; Kasibhatla, P. S.; Voulgarakis, A.; Kinney, P. L.; Shindell, D. T.; Randerson, J. T.

    2011-12-01

    Like fossil fuel pollution, fire emissions affect both climate change and air quality. In this study, we combine satellite-derived fire estimates and atmospheric modeling to quantify potential population exposure to particulate matter and ozone from fires in Southeast Asia from 1997 to 2007. This region has large interannual variability in fire activity due to El Niño-induced droughts and anthropogenic drivers. Though typically too wet to combust, increased sources of deforestation and degradation are enhancing the susceptibility of forests and underlying carbon-rich peat deposits to fire during drought, as documented in the extreme fires of the 1997-98 El Niño. Concerns of a positive feedback between fire activity and a warming climate would further increase the influence of fires on air quality degradation. Monthly fire emissions are estimated from the Global Fire Emissions Database (GFED version 3) and transported in two atmospheric models to assess population exposure. We show that during strong El Niño years, fires contribute to daily fine particulate matter and afternoon maximum ozone surface concentrations over 150 μg/m3 and 240 μg/m3, respectively. Exposure to these two types of pollutants increases mortality and hospital admissions from respiratory and cardiovascular diseases, even at low concentrations. This fire pollutant burden corresponds to 200 added days per year exceeding the World Health Organization fine particulate matter guideline and exposes up to 50 million additional people to more than 25 days above the most extreme pollutant concentrations. Our results indicate that substantial health and economic co-benefits would result from reducing fires in locations where transported emissions lead to enhanced exposure to air pollution during high fire years.

  5. Multi-year black carbon emissions from cropland burning in the Russian Federation

    NASA Astrophysics Data System (ADS)

    McCarty, J. L.; Ellicott, E. A.; Romanenkov, V.; Rukhovitch, D.; Koroleva, P.

    2011-12-01

    Cropland fires are an important source of black carbon (BC) emissions. Previous research has suggested that springtime cropland burning in Eastern Europe, and more specifically Russia, is a main source of BC in the Arctic atmosphere, acting as a short-lived climate forcer strongly influencing snow-ice albedo and radiation transmission in the atmosphere above the Arctic. BC emissions from cropland burning were estimated for the Russian Federation for years 2003 through 2009 using three satellite fire products, the 1 km MODIS Active Fire Product, 0.5° MODIS Fire Radiative Power monthly climate modeling grid product, and the 500 m MODIS Burned Area Product. Official statistics were also used to estimate BC emissions based on a modified approach developed and published by the All-Russian Institute of Organic Peat and Fertilizers to estimate farm- and regional-level residue loading based on straw surplus left after grain harvesting, while accounting for agricultural management and agrometeorological inputs. The satellite-based emission calculations utilized several different land cover classification schemas for defining croplands in Russia for both the 1 km MODIS Land Cover Product and the 300m MERIS GlobCover v2.2 data sets. In general, the peaks of BC emissions from cropland burning occurred during the spring (April - May), summer (July - August), and the fall (October). 2008 had the highest annual BC emissions. The range of average annual BC emissions from cropland burning calculated from the different satellite products was 2.49 Gg to 22.2 Gg, with the official statistics approach annual average equal to 7.34 Gg. The majority of BC emissions from the Fire Radiative Power and Burned Area satellite analyses originated in European Russia, followed by smaller contributions from West Siberia, Far East Russia, and East Siberia macro-regions, respectively. This presentation will further explore the uncertainties in the calculations of BC emissions from satellite and official statistics approaches, including input variables such as emission factors, fuel loads, and combustion efficiency. For example, a comparison of GIS field masks of three oblasts in European Russia with different levels of agricultural intensification revealed that between 22 to 42% of cropland fires detected by the MODIS 1 km Active Fire Product were incorrectly classified using the 1 km MODIS Land Cover data set's land cover classes of croplands and croplands/natural vegetation mosaic. Finally, we will show results from a comparison of our BC emission estimates with estimated emissions from agricultural burning from the Global Fire Emissions Database (GFED) version 3.

  6. Trends of anthropogenic mercury emissions from 1970-2008 using the global EDGARv4 database: the role of increasing emission mitigation by the energy sector and the chlor-alkali industry

    NASA Astrophysics Data System (ADS)

    Muntean, M.; Janssens-Maenhout, G.; Olivier, J. G.; Guizzardi, D.; Dentener, F. J.

    2012-12-01

    The Emission Database for Global Atmospheric Research (EDGAR) describes time-series of emissions of man-made greenhouse gases and short-lived atmospheric pollutants from 1970-2008. EDGARv4 is continuously updated to respond to needs of both the scientific community and environmental policy makers. Mercury, a toxic pollutant with bioaccumulation properties, is included in the forthcoming EDGARv4.3 release, thereby enriching the spectrum of multi-pollutant sources. Three different forms of mercury have been distinguished: gaseous elemental mercury (Hg0), divalent mercury compounds (Hg2+) and particulate associated mercury (Hg-P). A complete inventory of mercury emission sources has been developed at country level using the EDGAR technology-based methodology together with international activity statistics, technology-specific abatement measures, and emission factors from EMEP/EEA (2009), USEPA AP 42 and the scientific literature. A comparison of the EDGAR mercury emission data to the widely used UNEP inventory shows consistent emissions across most sectors compared for the year 2005. The different shares of mercury emissions by region and by sector will be presented with special emphasis on the region-specific mercury emission mitigation potential. We provide a comprehensive ex-post analysis of the mitigation of mercury emissions by respectively end-of-pipe abatement measures in the power generation sector and technology changes in the chlor-alkali industry between 1970 and 2008. Given the local scale impacts of mercury, we have paid special attention to the spatial distribution of emissions. The default EDGAR Population proxy data was only used to distribute emissions from the residential and solid waste incineration sectors. Other sectors use point source data of power plants, industrial plants, gold and mercury mines. The 2008 mercury emission distribution will be presented, which shows emissions hot-spots on a 0.1°x0.1°resolution gridmap.

  7. Modeling Aircraft Emissions for Regional-scale Air Quality: Adapting a New Global Aircraft Emissions Database for the U.S

    NASA Astrophysics Data System (ADS)

    Arunachalam, S.; Baek, B. H.; Vennam, P. L.; Woody, M. C.; Omary, M.; Binkowski, F.; Fleming, G.

    2012-12-01

    Commercial aircraft emit substantial amounts of pollutants during their complete activity cycle that ranges from landing-and-takeoff (LTO) at airports to cruising in upper elevations of the atmosphere, and affect both air quality and climate. Since these emissions are not uniformly emitted over the earth, and have substantial temporal and spatial variability, it is vital to accurately evaluate and quantify the relative impacts of aviation emissions on ambient air quality. Regional-scale air quality modeling applications do not routinely include these aircraft emissions from all cycles. Federal Aviation Administration (FAA) has developed the Aviation Environmental Design Tool (AEDT), a software system that dynamically models aircraft performance in space and time to calculate fuel burn and emissions from gate-to-gate for all commercial aviation activity from all airports globally. To process in-flight aircraft emissions and to provide a realistic representation of these for treatment in grid-based air quality models, we have developed an interface processor called AEDTproc that accurately distributes full-flight chorded emissions in time and space to create gridded, hourly model-ready emissions input data. Unlike the traditional emissions modeling approach of treating aviation emissions as ground-level sources or processing emissions only from the LTO cycles in regional-scale air quality studies, AEDTproc distributes chorded inventories of aircraft emissions during LTO cycles and cruise activities into a time-variant 3-D gridded structure. We will present results of processed 2006 global emissions from AEDT over a continental U.S. modeling domain to support a national-scale air quality assessment of the incremental impacts of aircraft emissions on surface air quality. This includes about 13.6 million flights within the U.S. out of 31.2 million flights globally. We will focus on assessing spatio-temporal variability of these commercial aircraft emissions, and comparing upper tropospheric budgets of NOx from aircraft and lightning sources in the modeling domain.

  8. CHIANTI - an atomic database for emission lines. IX. Ionization rates, recombination rates, ionization equilibria for the elements hydrogen through zinc and updated atomic data

    NASA Astrophysics Data System (ADS)

    Dere, K. P.; Landi, E.; Young, P. R.; Del Zanna, G.; Landini, M.; Mason, H. E.

    2009-05-01

    Aims: The goal of the CHIANTI atomic database is to provide a set of atomic data for the interpretation of astrophysical spectra emitted by collisionally dominated, high temperature, optically thin sources. Methods: A complete set of ground level ionization and recombination rate coefficients has been assembled for all atoms and ions of the elements of H through Zn and inserted into the latest version of the CHIANTI database, CHIANTI 6. Ionization rate coefficients are taken from the recent work of Dere (2007, A&A, 466, 771) and recombination rates from a variety of sources in the literature. These new rate coefficients have allowed the calculation of a new set of ionization equilibria and radiative loss rate coefficients. For some ions, such as Fe VIII and Fe IX, there are significant differences from previous calculations. In addition, existing atomic parameters have been revised and new atomic parameters inserted into the database. Results: For each ion in the CHIANTI database, elemental abundances, ionization potentials, atomic energy levels, radiative rates, electron and proton collisional rate coefficients, ionization and recombination rate coefficients, and collisional ionization equilibrium populations are provided. In addition, parameters for the calculation of the continuum due to bremsstrahlung, radiative recombination and two-photon decay are provided. A suite of programs written in the Interactive Data Language (IDL) are available to calculate line and continuum emissivities and other properties. All data and programs are freely available at http://wwwsolar.nrl.navy.mil/chianti

  9. MaGa, a web-based collaborative database for gas emissions: a tool to improve the knowledge on Earth degassing

    NASA Astrophysics Data System (ADS)

    Frigeri, A.; Cardellini, C.; Chiodini, G.; Frondini, F.; Bagnato, E.; Aiuppa, A.; Fischer, T. P.; Lehnert, K. A.

    2014-12-01

    The study of the main pathways of carbon flux from the deep Earth requires the analysis of a large quantity and variety of data on volcanic and non-volcanic gas emissions. Hence, there is need for common frameworks to aggregate available data and insert new observations. Since 2010 we have been developing the Mapping Gas emissions (MaGa) web-based database to collect data on carbon degassing form volcanic and non-volcanic environments. MaGa uses an Object-relational model, translating the experience of field surveyors into the database schema. The current web interface of MaGa allows users to browse the data in tabular format or by browsing an interactive web-map. Enabled users can insert information as measurement methods, instrument details as well as the actual values collected in the field. Measurements found in the literature can be inserted as well as direct field observations made by human-operated instruments. Currently the database includes fluxes and gas compositions from active craters degassing, diffuse soil degassing and fumaroles both from dormant volcanoes and open-vent volcanoes from literature survey and data about non-volcanic emission of the Italian territory. Currently, MaGa holds more than 1000 volcanic plume degassing fluxes, data from 30 sites of diffuse soil degassing from italian volcanoes, and about 60 measurements from fumarolic and non volcanic emission sites. For each gas emission site, the MaGa holds data, pictures, descriptions on gas sampling, analysis and measurement methods, together with bibliographic references and contacts to researchers having experience on each site. From 2012, MaGa developments started to be focused towards the framework of the Deep Earth Carbon Degassing research initiative of the Deep Carbon Observatory. Whithin the DECADE initiative, there are others data systems, as EarthChem and the Smithsonian Institution's Global Volcanism Program. An interoperable interaction between the DECADE data systems is being planned. MaGa is showing good potentials to improve the knowledge on Earth degassing firstly by making data more accessible and encouraging participation among researchers, and secondly by allowing to observe and explore, for the first time, a gas emission dataset with spatial and temporal extents never analyzed before.

  10. Multi-year black carbon emissions from cropland burning in the Russian Federation

    NASA Astrophysics Data System (ADS)

    McCarty, Jessica L.; Ellicott, Evan A.; Romanenkov, Vladimir; Rukhovitch, Dmitry; Koroleva, Polina

    2012-12-01

    Cropland fires are an important source of black carbon (BC) emissions. Previous research has suggested that springtime cropland burning in Eastern Europe, more specifically Russia, is a main contributor of BC in the Arctic atmosphere, acting as a short-lived climate forcer strongly influencing snow-ice albedo and radiation transmission. BC emissions from cropland burning were estimated for the Russian Federation for years 2003 through 2009 using three satellite fire products, the 1 km MODIS Active Fire Product, 0.5° MODIS Fire Radiative Power monthly climate modeling grid product, and the 500 m MODIS Burned Area Product, and a agricultural statistics approach based on a modified method developed and published by the All-Russian Institute of Organic Peat and Fertilizers to estimate farm- and regional-level residue loading from straw surplus left after grain harvesting, while accounting for agricultural management and agrometeorological inputs. The satellite-based emission calculations utilized several different land cover classification schemas for defining croplands in Russia for both the 1 km MODIS Land Cover Product and the 300 m MERIS GlobCover v2.2 data sets. In general, the peaks of BC emissions from cropland burning occurred during the spring (April-May), summer (July-August), and the fall (October). 2008 had the highest annual BC emissions. The range of average annual BC emissions from cropland burning calculated from the different satellite fire products was 2.49 Gg-22.2 Gg, with the agricultural statistics approach annual average equal to 8.90 Gg. The Global Fire Emissions Database (GFED) version 3 reported an annual average of 11.9 Gg of BC from agricultural burning. The results from this analysis showed that the majority of BC emissions originated in European Russia, followed by smaller contributions from West Siberia, Far East Russia, and East Siberia macro-regions. An uncertainty assessment on data used to calculate the BC emissions found moderate uncertainty in some of the input data used in this first attempt to produce spatially and temporally explicit BC emission estimates from cropland burning in the Russian Federation.

  11. Simulations of N2O concentrations for France using ecosystem models, emission databases and an atmospheric transport model

    NASA Astrophysics Data System (ADS)

    Massad, R. S.; Prieur, V.; Thompson, R.; Schultz, M.; Pison, I.; Bousquet, P.; Schmidt, M.; Lopez, M.; Boukari, E.; Lehuger, S.; Chaumartin, F.; Gabrielle, B.

    2012-04-01

    Soils are responsible for a major, although highly uncertain, share of the global emissions of nitrous oxide (N2O). N2O fluxes are strongly correlated to soil properties, soil management and local climatic conditions. These controlling factors interact at different temporal and spatial scales making it challenging to asses emissions at a regional level both with measurement and modeling. We used two biogeochemical simulation models CERES-EGC and O-CN to estimate N2O fluxes from agricultural soils over France, and compared them into the regional atmospheric chemistry-transport model CHIMERE (0.25°x0.25° for France). Comparisons between modelled and observed mixing ratios give insights on the quality of the emission scenarios used as input to the model, assuming small transport errors. The maps were tested by comparing CHIMERE simulations with time series of N2O atmospheric mixing ratios measured continuously in two locations over France during the year 2007. In an inverse mode, N2O emissions scenarios are used combination with N2O observed mixing ratios and an atmospheric transport model, to produce optimized emission scenarios. The model used is a global model (LMDZ-INCA, 3.75°x2.5° resolution with a 1°x1° zoom over Europe). For France the O-CN model which only accounts for crops and managed grassland emissions simulates total emissions of 95 Gg N-N2O/yr which are larger than total fluxes inferred from inversions (75 Gg N-N2O/yr). Inverted fluxes are 30% larger when compared to the prior emissions. Concerning CERES-EGC which only accounts for crops, the total emissions for 2007 sum-up to 20.4 Gg N-N2O/yr and are smaller than the total inverted flux.

  12. Multi-year black carbon emissions from cropland burning in the Russian Federation utilizing satellite fire data and agricultural statistics

    NASA Astrophysics Data System (ADS)

    McCarty, J.; Ellicott, E.; Romanenkov, V.; Rukhovitch, D.; Koroleva, P.

    2012-04-01

    Cropland fires are an important source of black carbon (BC) emissions. Previous research has suggested that springtime cropland burning in Eastern Europe, and more specifically Russia, is a main source of BC in the Arctic atmosphere, acting as a short-lived climate forcer strongly influencing snow-ice albedo and radiation transmission in the atmosphere above the Arctic. BC emissions from cropland burning were estimated for the Russian Federation for years 2003 through 2009 using three satellite fire products, the 1 km MODIS Active Fire Product, 0.5° MODIS Fire Radiative Power monthly climate modeling grid product, and the 500 m MODIS Burned Area Product. Agricultural statistics published by the Russian government were also used to estimate BC emissions from a modified approach developed and published by the All-Russian Institute of Organic Peat and Fertilizers to estimate farm- and regional-level residue loading based on straw surplus left after grain harvesting, while accounting for agricultural management and agrometeorological inputs. The satellite-based emission calculations utilized several different land cover classification schemas for defining croplands in Russia for both the 1 km MODIS Land Cover Product and the 300m MERIS GlobCover v2.2 data sets. In general, the peaks of BC emissions from cropland burning occurred during the spring (April - May), summer (July - August), and the fall (October). 2008 had the highest annual BC emissions. The range of average annual BC emissions from cropland burning calculated from the different satellite products was 2.49 Gg to 22.2 Gg, with the agricultural statistics approach annual average equal to 8.90 Gg. The Global Fire Emissions Database (GFED) version 3 estimated average annual BC emissions from agricultural fires in Russia for this time period to be 11.9 Gg. The majority of BC emissions from the Fire Radiative Power, Burned Area, and Active Fire satellite analyses originated in European Russia, followed by smaller contributions from West Siberia, Far East Russia, and East Siberia macro-regions, respectively. This presentation will further explore the uncertainties in the calculations of BC emissions from satellite and official statistics approaches, including input variables such as emission factors, fuel loads, and combustion efficiency. For example, a comparison of GIS field masks of three oblasts in European Russia with different levels of agricultural intensification revealed that between 22 to 42% of cropland fires detected by the MODIS 1 km Active Fire Product were incorrectly classified using the 1 km MODIS Land Cover data set's land cover classes of croplands and croplands/natural vegetation mosaic.

  13. A regression approach for estimation of anthropogenic heat flux based on a bottom-up air pollutant emission database

    NASA Astrophysics Data System (ADS)

    Lee, Sang-Hyun; McKeen, Stuart A.; Sailor, David J.

    2014-10-01

    A statistical regression method is presented for estimating hourly anthropogenic heat flux (AHF) using an anthropogenic pollutant emission inventory for use in mesoscale meteorological and air-quality modeling. Based on bottom-up AHF estimated from detailed energy consumption data and anthropogenic pollutant emissions of carbon monoxide (CO) and nitrogen oxides (NOx) in the US National Emission Inventory year 2005 (NEI-2005), a robust regression relation between the AHF and the pollutant emissions is obtained for Houston. This relation is a combination of two power functions (Y = aXb) relating CO and NOx emissions to AHF, giving a determinant coefficient (R2) of 0.72. The AHF for Houston derived from the regression relation has high temporal (R = 0.91) and spatial (R = 0.83) correlations with the bottom-up AHF. Hourly AHF for the whole US in summer is estimated by applying the regression relation to the NEI-2005 summer pollutant emissions with a high spatial resolution of 4-km. The summer daily mean AHF range 10-40 W m-2 on a 4 × 4 km2 grid scale with maximum heat fluxes of 50-140 W m-2 for major US cities. The AHFs derived from the regression relations between the bottom-up AHF and either CO or NOx emissions show a small difference of less than 5% (4.7 W m-2) in city-scale daily mean AHF, and similar R2 statistics, compared to results from their combination. Thus, emissions of either species can be used to estimate AHF in the US cities. An hourly AHF inventory at 4 × 4 km2 resolution over the entire US based on the combined regression is derived and made publicly available for use in mesoscale numerical modeling.

  14. Importance of transboundary transport of biomass burning emissions to regional air quality in Southeast Asia

    NASA Astrophysics Data System (ADS)

    Aouizerats, B.; van der Werf, G. R.; Balasubramanian, R.; Betha, R.

    2014-05-01

    Smoke from biomass and peat burning has a notable impact on ambient air quality and climate in the Southeast Asia (SEA) region. We modeled the largest fire-induced haze episode in the past decade (2006) in Indonesia using the Weather Research and Forecasting model coupled with Chemistry (WRF-Chem). We focused mainly on the evolution of the fire plume composition and its interaction with the urbanized area of the city-state of Singapore, and on comparisons of modeled and measured aerosol and CO concentrations. Two simulations were run with the model using the complex Volatility Basis Set (VBS) scheme to reproduce primary and secondary aerosol evolution and concentration. The first simulation referred to as WRF-FIRE included anthropogenic, biogenic, and b iomass burning emissions from the Global Fire Emissions Database (GFED3) while the second simulation referred to as WRF-NOFIRE was run without emissions from biomass burning. To test model performance, we used three independent datasets for comparison including airborne measurements of Particulate Matter with a diameter of 10 μm or less (PM10) in Singapore, CO measurements in Sumatra, and Aerosol Optical Depth (AOD) column observations from 4 satellite-based sensors. We found reasonable agreement of the model runs with both ground-based measurements of CO and PM10. The comparison with AOD was less favorable and indicated the model underestimated AOD, although the degree of mismatch varied between different satellite data sets. During our study period, forest and peat fires in Sumatra were the main cause of enhanced aerosol concentrations from regional transport over Singapore. Analysis of the biomass burning plume showed high concentrations of primary organic aerosols (POA) with values up to 600 μg m-3 over the fire locations. The concentration of POA remained quite stable within the plume between the main burning region and Singapore while secondary organic aerosol (SOA) concentration slightly increased. The absolute values of SOA (up to 20 μg m-3) were much lower than those from POA, indicating a minor role of SOA in biomass burning plumes. Our results show that about 21% of the total mass loading of ambient PM10 during the July-October study period in Singapore was due to biomass and peat burning in Sumatra, but this contribution increased during high burning periods. In total, our model results indicated that during 35 days aerosol concentrations in Singapore were above the threshold of 50 μg m-3 day-1 indicating poor air quality. During 17 days this was due to fires, based on the difference between the simulations with and without fires. Local pollution in combination with recirculation of air masses was probably the main cause of poor air quality during the other 18 days, although fires from Sumatra and probably also from Borneo added to the enhanced PM10 concentrations. The model vs. measurement comparisons highlighted that for our study period and region the GFED3 biomass burning aerosol emissions were more in line with observations than found in other studies. This indicates that care should be taken when using AOD to constrain emissions or estimate ground-level air quality. This study also shows the need for relatively high resolution modeling to accurately reproduce the advection of air masses necessary to quantify the impacts and feedbacks on air quality.

  15. Importance of transboundary transport of biomass burning emissions to regional air quality in Southeast Asia during a high fire event

    NASA Astrophysics Data System (ADS)

    Aouizerats, B.; van der Werf, G. R.; Balasubramanian, R.; Betha, R.

    2015-01-01

    Smoke from biomass and peat burning has a notable impact on ambient air quality and climate in the Southeast Asia (SEA) region. We modeled a large fire-induced haze episode in 2006 stemming mostly from Indonesia using the Weather Research and Forecasting model coupled with chemistry (WRF-Chem). We focused on the evolution of the fire plume composition and its interaction with the urbanized area of the city state of Singapore, and on comparisons of modeled and measured aerosol and carbon monoxide (CO) concentrations. Two simulations were run with WRF-Chem using the complex volatility basis set (VBS) scheme to reproduce primary and secondary aerosol evolution and concentration. The first simulation referred to as WRF-FIRE included anthropogenic, biogenic and biomass burning emissions from the Global Fire Emissions Database (GFED3) while the second simulation referred to as WRF-NOFIRE was run without emissions from biomass burning. To test model performance, we used three independent data sets for comparison including airborne measurements of particulate matter (PM) with a diameter of 10 μm or less (PM10) in Singapore, CO measurements in Sumatra, and aerosol optical depth (AOD) column observations from four satellite-based sensors. We found reasonable agreement between the model runs and both ground-based measurements of CO and PM10. The comparison with AOD was less favorable and indicated the model underestimated AOD, although the degree of mismatch varied between different satellite data sets. During our study period, forest and peat fires in Sumatra were the main cause of enhanced aerosol concentrations from regional transport over Singapore. Analysis of the biomass burning plume showed high concentrations of primary organic aerosols (POA) with values up to 600 μg m-3 over the fire locations. The concentration of POA remained quite stable within the plume between the main burning region and Singapore while the secondary organic aerosol (SOA) concentration slightly increased. However, the absolute concentrations of SOA (up to 20 μg m-3) were much lower than those from POA, indicating a minor role of SOA in these biomass burning plumes. Our results show that about 21% of the total mass loading of ambient PM10 during the July-October study period in Singapore was due to biomass and peat burning in Sumatra, but this contribution increased during high burning periods. In total, our model results indicated that during 35 days aerosol concentrations in Singapore were above the threshold of 50 μg m-3 day-1 indicating poor air quality. During 17 days this was due to fires, based on the difference between the simulations with and without fires. Local pollution in combination with recirculation of air masses was probably the main cause of poor air quality during the other 18 days, although fires from Sumatra and probably also from Kalimantan (Indonesian part of the island of Borneo) added to the enhanced PM10 concentrations. The model versus measurement comparisons highlighted that for our study period and region the GFED3 biomass burning aerosol emissions were more in line with observations than found in other studies. This indicates that care should be taken when using AOD to constrain emissions or estimate ground-level air quality. This study also shows the need for relatively high resolution modeling to accurately reproduce the advection of air masses necessary to quantify the impacts and feedbacks on regional air quality.

  16. Machine learning for toxicity characterization of organic chemical emissions using USEtox database: Learning the structure of the input space.

    PubMed

    Marvuglia, Antonino; Kanevski, Mikhail; Benetto, Enrico

    2015-10-01

    Toxicity characterization of chemical emissions in Life Cycle Assessment (LCA) is a complex task which usually proceeds via multimedia (fate, exposure and effect) models attached to models of dose-response relationships to assess the effects on target. Different models and approaches do exist, but all require a vast amount of data on the properties of the chemical compounds being assessed, which are hard to collect or hardly publicly available (especially for thousands of less common or newly developed chemicals), therefore hampering in practice the assessment in LCA. An example is USEtox, a consensual model for the characterization of human toxicity and freshwater ecotoxicity. This paper places itself in a line of research aiming at providing a methodology to reduce the number of input parameters necessary to run multimedia fate models, focusing in particular to the application of the USEtox toxicity model. By focusing on USEtox, in this paper two main goals are pursued: 1) performing an extensive exploratory analysis (using dimensionality reduction techniques) of the input space constituted by the substance-specific properties at the aim of detecting particular patterns in the data manifold and estimating the dimension of the subspace in which the data manifold actually lies; and 2) exploring the application of a set of linear models, based on partial least squares (PLS) regression, as well as a nonlinear model (general regression neural network--GRNN) in the seek for an automatic selection strategy of the most informative variables according to the modelled output (USEtox factor). After extensive analysis, the intrinsic dimension of the input manifold has been identified between three and four. The variables selected as most informative may vary according to the output modelled and the model used, but for the toxicity factors modelled in this paper the input variables selected as most informative are coherent with prior expectations based on scientific knowledge of toxicity factors modelling. Thus the outcomes of the analysis are promising for the future application of the approach to other portions of the model, affected by important data gaps, e.g., to the calculation of human health effect factors. PMID:26101085

  17. Burned area, active fires and biomass burning - approaches to account for emissions from fires in Tanzania

    NASA Astrophysics Data System (ADS)

    Ruecker, Gernot; Hoffmann, Anja; Leimbach, David; Tiemann, Joachim; Ng'atigwa, Charles

    2013-04-01

    Eleven years of data from the globally available MODIS burned area and the MODS Active Fire Product have been analysed for Tanzania in conjunction with GIS data on land use and cover to provide a baseline for fire activity in this East African country. The total radiated energy (FRE) emitted by fires that were picked up by the burned area and active fire product is estimated based on a spatio-temporal clustering algorithm over the burned areas, and integration of the fire radiative power from the MODIS Active Fires product over the time of burning and the area of each burned area cluster. Resulting biomass combusted by unit area based on Woosteŕs scaling factor for FRE to biomass combusted is compared to values found in the literature, and to values found in the Global Fire Emissions Database (GFED). Pyrogenic emissions are then estimated using emission factors. According to our analysis, an average of 11 million ha burn annually (ranging between 8.5 and 12.9 million ha) in Tanzania corresponding to between 10 and 14 % of Tanzaniás land area. Most burned area is recorded in the months from May to October. The land cover types most affected are woodland and shrubland cover types: they comprise almost 70 % of Tanzania's average annual burned area or 6.8 million ha. Most burning occurs in gazetted land, with an annual average of 3.7 million ha in forest reserves, 3.3 million ha in game reserves and 1.46 million ha in national parks, totalling close to 8.5 million ha or 77 % of the annual average burned area of Tanzania. Annual variability of burned area is moderate for most of the analysed classes, and in most cases there is no clear trend to be detected in burned area, except for the Lindi region were annual burned area appears to be increasing. Preliminary results regarding emissions from fires show that for larger fires that burn over a longer time, biomass burned derived through the FRP method compares well to literature values, while the integration over smaller fires with fewer observations yields unstable results due to undersampling issues and uncertainty in the start and end time of the fire events. Options for mitigating these issues using ancillary data such as fire weather information are discussed.

  18. Improving global fire carbon emissions estimates by combining moderate resolution burned area and active fire observations

    NASA Astrophysics Data System (ADS)

    Randerson, J. T.; Chen, Y.; Giglio, L.; Rogers, B. M.; van der Werf, G.

    2011-12-01

    In several important biomes, including croplands and tropical forests, many small fires exist that have sizes that are well below the detection limit for the current generation of burned area products derived from moderate resolution spectroradiometers. These fires likely have important effects on greenhouse gas and aerosol emissions and regional air quality. Here we developed an approach for combining 1km thermal anomalies (active fires; MOD14A2) and 500m burned area observations (MCD64A1) to estimate the prevalence of these fires and their likely contribution to burned area and carbon emissions. We first estimated active fires within and outside of 500m burn scars in 0.5 degree grid cells during 2001-2010 for which MCD64A1 burned area observations were available. For these two sets of active fires we then examined mean fire radiative power (FRP) and changes in enhanced vegetation index (EVI) derived from 16-day intervals immediately before and after each active fire observation. To estimate the burned area associated with sub-500m fires, we first applied burned area to active fire ratios derived solely from within burned area perimeters to active fires outside of burn perimeters. In a second step, we further modified our sub-500m burned area estimates using EVI changes from active fires outside and within of burned areas (after subtracting EVI changes derived from control regions). We found that in northern and southern Africa savanna regions and in Central and South America dry forest regions, the number of active fires outside of MCD64A1 burned areas increased considerably towards the end of the fire season. EVI changes for active fires outside of burn perimeters were, on average, considerably smaller than EVI changes associated with active fires inside burn scars, providing evidence for burn scars that were substantially smaller than the 25 ha area of a single 500m pixel. FRP estimates also were lower for active fires outside of burn perimeters. In our analysis we quantified how including sub-500m burned area influenced global burned area, carbon emissions, and net ecosystem exchange (NEE) in different continental regions using the Global Fire Emissions Database (GFED) biogeochemical model. We conclude by discussing validation needs using higher resolution visible and thermal imagery.

  19. Biofuel Database

    National Institute of Standards and Technology Data Gateway

    Biofuel Database (Web, free access)   This database brings together structural, biological, and thermodynamic data for enzymes that are either in current use or are being considered for use in the production of biofuels.

  20. Database Administrator

    ERIC Educational Resources Information Center

    Moore, Pam

    2010-01-01

    The Internet and electronic commerce (e-commerce) generate lots of data. Data must be stored, organized, and managed. Database administrators, or DBAs, work with database software to find ways to do this. They identify user needs, set up computer databases, and test systems. They ensure that systems perform as they should and add people to the

  1. Electronic Databases.

    ERIC Educational Resources Information Center

    Williams, Martha E.

    1985-01-01

    Presents examples of bibliographic, full-text, and numeric databases. Also discusses how to access these databases online, aids to online retrieval, and several issues and trends (including copyright and downloading, transborder data flow, use of optical disc/videodisc technology, and changing roles in database generation and processing). (JN)

  2. Database Administrator

    ERIC Educational Resources Information Center

    Moore, Pam

    2010-01-01

    The Internet and electronic commerce (e-commerce) generate lots of data. Data must be stored, organized, and managed. Database administrators, or DBAs, work with database software to find ways to do this. They identify user needs, set up computer databases, and test systems. They ensure that systems perform as they should and add people to the…

  3. Estimating nitrate emissions to surface water at regional and national scale: comparison of models using detailed regional and national-wide databases (France)

    NASA Astrophysics Data System (ADS)

    Dupas, R.; Gascuel-Odoux, C.; Durand, P.; Parnaudeau, V.

    2012-04-01

    The European Union (EU) Water Framework Directive (WFD) requires River Basin District managers to carry out an analysis of nutrient pressures and impacts, in order to evaluate the risk of water bodies failing to reach "good ecological status" and to identify those catchments where prioritized nonpoint-source control measures should be implemented. A model has been developed to estimate nitrate nonpoint-source emissions to surface water, using readily available data in France. It was inspired from US model SPARROW (Smith al., 1997) and European model GREEN (Grizzetti et al., 2008), i.e. statistical approaches consisting of linking nitrogen sources and catchments' land and rivers characteristics. The N-nitrate load (L) at the outlet of a catchment is expressed as: L= R*(B*Lsgw+Ldgw+PS)-denitlake Where denitlake is a denitrification factor for lakes and reservoirs, Lsgw is the shallow groundwater discharge to streams (derived from the base flow index and N surplus in kgN.ha-1.yr-1), Ldgw is the deep groundwater discharge to streams (derived from total runoff, the base flow index and deep groundwater N concentration), PS is point sources from domestic and industrial origin (kgN.ha-1.yr-1) and R and B are the river system and basin reduction factor, respectively. Besides calibrating and evaluating the model at a national scale, its predictive quality was compared with those of regionalized models in Brittany (Western France) and in the Seine river basin (Paris basin), where detailed regional databases are available. The national-scale model proved to provide robust predictions in most conditions encountered in France, as it fitted observed N-nitrate load with an efficiency of 0.69. Regionalization of the model reduced the standard error in the prediction of N-nitrate loads by about 19 Hence, the development of regionalized models should be advocated only after the trade-off between improvement of fit and degradation of parameters' estimation has come under scrutiny.

  4. No Smoke Without Fire: the hidden costs of early life exposure to landscape fire emissions in Indonesia

    NASA Astrophysics Data System (ADS)

    Jina, A.; Marlier, M. E.

    2012-12-01

    Air pollution from landscape fire emissions can have devastating effects upon public health. The consequent health costs place a burden upon the economies of many nations, particularly in developing countries. Recent research has assessed contemporaneous mortality due to respiratory infections or cardiovascular disease, but little has looked at the potential long-term consequences and hidden costs of exposure to fire pollution at a population scale. The difficulty of quantifying these costs is partly due to incomplete or inaccurate health data in many developing countries, and is further compounded by sparse air pollution monitoring data. While satellite data partially compensates for this, there can still be significant gaps in data availability and difficulty in retrieving surface concentrations. In this study, we demonstrate the dramatic long-term health and human development consequences of fine particulate matter (PM2.5) exposure by using modeled PM2.5 to quantify repeated exposure to landscape fire emissions in Indonesia, which is prone to large, catastrophic fires during El Niño conditions. Surface PM2.5 concentrations at 2x2.5° resolution are obtained from GISS-E2-Puccini (the new version of the NASA GISS ModelE general circulation model), run with monthly fire emissions from the Global Fire Emissions Database version 3 (GFED3). 24-hour ambient PM2.5 concentrations across Indonesia are matched to geographically and socioeconomically representative longitudinal surveys conducted by the Indonesian government. We find important medium- to long-term morbidity associated with early life exposure to ambient air pollution from fire emissions. Our analysis indicates that children exposed to high levels of PM2.5 in utero are more likely to suffer from impaired physical and cognitive development. A one standard deviation increase in ambient air pollution, derived from the GISS-E2-Puccini model, leads to effects that are directly comparable to those from indoor air pollution. In addition, income shocks due to pollution-caused family illness can lead to an antenatal amplification of these in utero effects. The impacts of exposure in early life can be difficult to reverse, leading to a persistent effects upon a society which may contribute a significant cost to the more readily demonstrated losses associated with immediate health impacts.

  5. NLTE4 Plasma Population Kinetics Database

    National Institute of Standards and Technology Data Gateway

    SRD 159 NLTE4 Plasma Population Kinetics Database (Web database for purchase)   This database contains benchmark results for simulation of plasma population kinetics and emission spectra. The data were contributed by the participants of the 4th Non-LTE Code Comparison Workshop who have unrestricted access to the database. The only limitation for other users is in hidden labeling of the output results. Guest users can proceed to the database entry page without entering userid and password.

  6. Database Manager

    ERIC Educational Resources Information Center

    Martin, Andrew

    2010-01-01

    It is normal practice today for organizations to store large quantities of records of related information as computer-based files or databases. Purposeful information is retrieved by performing queries on the data sets. The purpose of DATABASE MANAGER is to communicate to students the method by which the computer performs these queries. This…

  7. Maize databases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter is a succinct overview of maize data held in the species-specific database MaizeGDB (the Maize Genomics and Genetics Database), and selected multi-species data repositories, such as Gramene/Ensembl Plants, Phytozome, UniProt and the National Center for Biotechnology Information (NCBI), ...

  8. Genome databases

    SciTech Connect

    Courteau, J.

    1991-10-11

    Since the Genome Project began several years ago, a plethora of databases have been developed or are in the works. They range from the massive Genome Data Base at Johns Hopkins University, the central repository of all gene mapping information, to small databases focusing on single chromosomes or organisms. Some are publicly available, others are essentially private electronic lab notebooks. Still others limit access to a consortium of researchers working on, say, a single human chromosome. An increasing number incorporate sophisticated search and analytical software, while others operate as little more than data lists. In consultation with numerous experts in the field, a list has been compiled of some key genome-related databases. The list was not limited to map and sequence databases but also included the tools investigators use to interpret and elucidate genetic data, such as protein sequence and protein structure databases. Because a major goal of the Genome Project is to map and sequence the genomes of several experimental animals, including E. coli, yeast, fruit fly, nematode, and mouse, the available databases for those organisms are listed as well. The author also includes several databases that are still under development - including some ambitious efforts that go beyond data compilation to create what are being called electronic research communities, enabling many users, rather than just one or a few curators, to add or edit the data and tag it as raw or confirmed.

  9. BIOMARKERS DATABASE

    EPA Science Inventory

    This database was developed by assembling and evaluating the literature relevant to human biomarkers. It catalogues and evaluates the usefulness of biomarkers of exposure, susceptibility and effect which may be relevant for a longitudinal cohort study. In addition to describing ...

  10. Database filters

    SciTech Connect

    Pramanik, S.

    1982-01-01

    Several hardware database-searchers for a large number of patterns or keys are presented. These searchers can be implemented by a random access memory and are suitable for VLSI implementation. Application of these searchers as database filters is described; a filter detects all the matched records in the database, as well as a few others. The percentage of unmatched records can be reduced to any arbitrary minimum value by using several filters together, or passing the output records repeatedly through the same filters. The performance of the filters using the iterative approach depends very much on the regrouping algorithms of the patterns/keys. Several such algorithms are presented and their performances compared. A single pass is required if they are pipelined. Hardware organisation for different pipelined approaches are also studied. Experiments are performed for all the different hardware organisations mentioned above on an employee-name database. 25 references.

  11. Solubility Database

    National Institute of Standards and Technology Data Gateway

    SRD 106 IUPAC-NIST Solubility Database (Web, free access)   These solubilities are compiled from 18 volumes (Click here for List) of the International Union for Pure and Applied Chemistry(IUPAC)-NIST Solubility Data Series. The database includes liquid-liquid, solid-liquid, and gas-liquid systems. Typical solvents and solutes include water, seawater, heavy water, inorganic compounds, and a variety of organic compounds such as hydrocarbons, halogenated hydrocarbons, alcohols, acids, esters and nitrogen compounds. There are over 67,500 solubility measurements and over 1800 references.

  12. The CHIANTI atomic database

    NASA Astrophysics Data System (ADS)

    Young, P. R.; Dere, K. P.; Landi, E.; Del Zanna, G.; Mason, H. E.

    2016-04-01

    The freely available CHIANTI atomic database was first released in 1996 and has had a huge impact on the analysis and modeling of emissions from astrophysical plasmas. It contains data and software for modeling optically thin atom and positive ion emission from low density (≲1013 cm-3) plasmas from x-ray to infrared wavelengths. A key feature is that the data are assessed and regularly updated, with version 8 released in 2015. Atomic data for modeling the emissivities of 246 ions and neutrals are contained in CHIANTI, together with data for deriving the ionization fractions of all elements up to zinc. The different types of atomic data are summarized here and their formats discussed. Statistics on the impact of CHIANTI to the astrophysical community are given and examples of the diverse range of applications are presented.

  13. An ensemble approach to simulate CO2 emissions from natural fires

    NASA Astrophysics Data System (ADS)

    Eliseev, A. V.; Mokhov, I. I.; Chernokulsky, A. V.

    2014-06-01

    This paper presents ensemble simulations with the global climate model developed at the A. M. Obukhov Institute of Atmospheric Physics, Russian Academy of Sciences (IAP RAS CM). These simulations are forced by historical reconstructions of concentrations of well-mixed greenhouse gases (CO2, CH4, and N2O), sulfate aerosols (both in the troposphere and stratosphere), extent of crops and pastures, and total solar irradiance for AD 850-2005 (hereafter all years are taken as being AD) and by the Representative Concentration Pathway (RCP) scenarios for the same forcing agents until the year 2300. Our model implements GlobFIRM (Global FIRe Model) as a scheme for calculating characteristics of natural fires. Comparing to the original GlobFIRM model, in our implementation, the scheme is extended by a module accounting for CO2 release from soil during fires. The novel approach of our paper is to simulate natural fires in an ensemble fashion. Different ensemble members in the present paper are constructed by varying the values of parameters of the natural fires module. These members are constrained by the GFED-3.1 data set for the burnt area and CO2 release from fires and further subjected to Bayesian averaging. Our simulations are the first coupled model assessment of future changes in gross characteristics of natural fires. In our model, the present-day (1998-2011) global area burnt due to natural fires is (2.1 ± 0.4) × 106 km2 yr-1 (ensemble mean and intra-ensemble standard deviation are presented), and the respective CO2 emissions to the atmosphere are (1.4 ± 0.2) Pg C yr-1. The latter value is in agreement with the corresponding GFED estimates. The area burnt by natural fires is generally larger than the GFED estimates except in boreal Eurasia, where it is realistic, and in Australia, where it is smaller than these estimates. Regionally, the modelled CO2 emissions are larger (smaller) than the GFED estimates in Europe (in the tropics and north-eastern Eurasia). From 1998-2011 to 2091-2100, the ensemble mean global burnt area is increased by 13% (28%, 36%, 51%) under scenario RCP 2.6 (RCP 4.5, RCP 6.0, RCP 8.5). The corresponding global emissions increase is 14% (29%, 37%, 42%). From 2091-2100 to 2291-2300, under the mitigation scenario RCP 2.6 the ensemble mean global burnt area and the respective CO2 emissions slightly decrease, both by 5% relative to their values in the period 2091-2100. In turn, under scenario RCP 4.5 (RCP 6.0, RCP 8.5) the ensemble mean burnt area in the period 2291-2100 is higher by 15% (44%, 83%) than its mean value, and the ensemble mean CO2 emissions are correspondingly higher by 9% (19%, 31%). The simulated changes of natural fire characteristics in the 21st-23rd centuries are associated mostly with the corresponding changes in boreal regions of Eurasia and North America. However, under the RCP 8.5 scenario, the increase of the burnt area and CO2 emissions in boreal regions during the 22nd and 23rd centuries is accompanied by the respective decreases in the tropics and subtropics.

  14. Fire and Emission Characterization in the Northern Sub-Saharan Africa (NSSA) Region and their Potential Effects on the Regional Climate System

    NASA Astrophysics Data System (ADS)

    Ellison, L.; Ichoku, C. M.

    2013-12-01

    Northern Sub-Saharan Africa (NSSA) is known for its consistent vast amounts of seasonal biomass burning each year. These mostly anthropogenic slash-and-burn fires typically used for farming and grazing purposes contributes to a significant proportion of the total global emissions of particulate matter (PM). The consequences of such severe burning could potentially have a noticeable influence on local climate patterns, such as the frequent severe droughts over the past century or the drying of Lake Chad, through both direct and indirect causes. This research therefore focuses on: 1) characterizing the burning patterns and extent within NSSA, 2) accurately quantifying PM emissions that have a direct impact on climate, and 3) exploring potential indirect impacts of burning on climate through evaluation of correlations with various environmental and meteorological parameters. In this study, the NSSA region was first split into nine distinct sub-regions to better analyze the burning patters and climatological changes. The diurnal cycle of fire radiative power (FRP, a quantifiable way of measuring fire radiant heat output) within these different regions differ in amplitude and shape, though the basic shape is the same with months of maximum FRP being between November and January and with practically no fires during the rainy season. Corresponding changes in other climatological variables were studied against changes seen in FRP on a monthly scale, including precipitation, soil moisture, surface evaporation, evapotranspiration (ET), normalized difference vegetation index (NDVI) and aerosol optical depth (AOD). This study includes an analysis of the distinct change in FRP signal that occurred in 2006 for the middle of the NSSA region, which is the area with the highest concentration of fires. A decrease in maximum monthly FRP has been observed since 2006 in this region. Regional changes in PM emissions have also been observed since then, including a large region of decreasing emissions southwest of Lake Chad. These emissions are taken from the new Fire Energetics and Emissions Research (FEER) emissions product that was developed as part of this NSSA research and is based on a global coefficient of emission (Ce) map with high spatial resolution. The FEER algorithm is a top-down approach in an effort to properly account for all emitted PM, which is especially important in the NSSA region because of its high concentration of fire events. When the FEER Ce v1.0 product is combined with the global FRP dataset from the Global Fire Assimilation System (GFAS) v1.0 product to generate PM emissions, estimates of total particulate matter (TPM) are generated. The FEER product estimates average annual TPM emissions in the NSSA region to be around 14 Tg between 2004-2010, which is greater than GFAS v1.0 by a factor of 1.8, and greater than the Global Fire Emissions Database (GFED) v3.1 by a factor of 1.6. Future work will plug these new emission estimates into regional models to gain a better understanding of the impacts of biomass burning on climate in NSSA.

  15. Stackfile Database

    NASA Technical Reports Server (NTRS)

    deVarvalho, Robert; Desai, Shailen D.; Haines, Bruce J.; Kruizinga, Gerhard L.; Gilmer, Christopher

    2013-01-01

    This software provides storage retrieval and analysis functionality for managing satellite altimetry data. It improves the efficiency and analysis capabilities of existing database software with improved flexibility and documentation. It offers flexibility in the type of data that can be stored. There is efficient retrieval either across the spatial domain or the time domain. Built-in analysis tools are provided for frequently performed altimetry tasks. This software package is used for storing and manipulating satellite measurement data. It was developed with a focus on handling the requirements of repeat-track altimetry missions such as Topex and Jason. It was, however, designed to work with a wide variety of satellite measurement data [e.g., Gravity Recovery And Climate Experiment -- GRACE). The software consists of several command-line tools for importing, retrieving, and analyzing satellite measurement data.

  16. Estimates of embodied global energy and air-emission intensities of Japanese products for building a Japanese input-output life cycle assessment database with a global system boundary.

    PubMed

    Nansai, Keisuke; Kondo, Yasushi; Kagawa, Shigemi; Suh, Sangwon; Nakajima, Kenichi; Inaba, Rokuta; Tohno, Susumu

    2012-08-21

    To build a life cycle assessment (LCA) database of Japanese products embracing their global supply chains in a manner requiring lower time and labor burdens, this study estimates the intensity of embodied global environmental burden for commodities produced in Japan. The intensity of embodied global environmental burden is a measure of the environmental burden generated globally by unit production of the commodity and can be used as life cycle inventory data in LCA. The calculation employs an input-output LCA method with a global link input-output model that defines a global system boundary grounded in a simplified multiregional input-output framework. As results, the intensities of embodied global environmental burden for 406 Japanese commodities are determined in terms of energy consumption, greenhouse-gas emissions (carbon dioxide, methane, nitrous oxide, perfluorocarbons, hydrofluorocarbons, sulfur hexafluoride, and their summation), and air-pollutant emissions (nitrogen oxide and sulfur oxide). The uncertainties in the intensities of embodied global environmental burden attributable to the simplified structure of the global link input-output model are quantified using Monte Carlo simulation. In addition, by analyzing the structure of the embodied global greenhouse-gas intensities we characterize Japanese commodities in the context of LCA embracing global supply chains. PMID:22881452

  17. Estimates of Embodied Global Energy and Air-Emission Intensities of Japanese Products for Building a Japanese Input–Output Life Cycle Assessment Database with a Global System Boundary

    PubMed Central

    2012-01-01

    To build a life cycle assessment (LCA) database of Japanese products embracing their global supply chains in a manner requiring lower time and labor burdens, this study estimates the intensity of embodied global environmental burden for commodities produced in Japan. The intensity of embodied global environmental burden is a measure of the environmental burden generated globally by unit production of the commodity and can be used as life cycle inventory data in LCA. The calculation employs an input–output LCA method with a global link input–output model that defines a global system boundary grounded in a simplified multiregional input–output framework. As results, the intensities of embodied global environmental burden for 406 Japanese commodities are determined in terms of energy consumption, greenhouse-gas emissions (carbon dioxide, methane, nitrous oxide, perfluorocarbons, hydrofluorocarbons, sulfur hexafluoride, and their summation), and air-pollutant emissions (nitrogen oxide and sulfur oxide). The uncertainties in the intensities of embodied global environmental burden attributable to the simplified structure of the global link input–output model are quantified using Monte Carlo simulation. In addition, by analyzing the structure of the embodied global greenhouse-gas intensities we characterize Japanese commodities in the context of LCA embracing global supply chains. PMID:22881452

  18. MMAPDNG: A new, fast code backed by a memory-mapped database for simulating delayed γ-ray emission with MCNPX package

    NASA Astrophysics Data System (ADS)

    Lou, Tak Pui; Ludewigt, Bernhard

    2015-09-01

    The simulation of the emission of beta-delayed gamma rays following nuclear fission and the calculation of time-dependent energy spectra is a computational challenge. The widely used radiation transport code MCNPX includes a delayed gamma-ray routine that is inefficient and not suitable for simulating complex problems. This paper describes the code "MMAPDNG" (Memory-Mapped Delayed Neutron and Gamma), an optimized delayed gamma module written in C, discusses usage and merits of the code, and presents results. The approach is based on storing required Fission Product Yield (FPY) data, decay data, and delayed particle data in a memory-mapped file. When compared to the original delayed gamma-ray code in MCNPX, memory utilization is reduced by two orders of magnitude and the ray sampling is sped up by three orders of magnitude. Other delayed particles such as neutrons and electrons can be implemented in future versions of MMAPDNG code using its existing framework.

  19. Database Marketplace 2002: The Database Universe.

    ERIC Educational Resources Information Center

    Tenopir, Carol; Baker, Gayle; Robinson, William

    2002-01-01

    Reviews the database industry over the past year, including new companies and services, company closures, popular database formats, popular access methods, and changes in existing products and services. Lists 33 firms and their database services; 33 firms and their database products; and 61 company profiles. (LRW)

  20. Overlap in Bibliographic Databases.

    ERIC Educational Resources Information Center

    Hood, William W.; Wilson, Concepcion S.

    2003-01-01

    Examines the topic of Fuzzy Set Theory to determine the overlap of coverage in bibliographic databases. Highlights include examples of comparisons of database coverage; frequency distribution of the degree of overlap; records with maximum overlap; records unique to one database; intra-database duplicates; and overlap in the top ten databases.…

  1. Database Access Systems.

    ERIC Educational Resources Information Center

    Dalrymple, Prudence W.; Roderer, Nancy K.

    1994-01-01

    Highlights the changes that have occurred from 1987-93 in database access systems. Topics addressed include types of databases, including CD-ROMs; enduser interface; database selection; database access management, including library instruction and use of primary literature; economic issues; database users; the search process; and improving…

  2. Online Databases in Physics.

    ERIC Educational Resources Information Center

    Sievert, MaryEllen C.; Verbeck, Alison F.

    1984-01-01

    This overview of 47 online sources for physics information available in the United States--including sub-field databases, transdisciplinary databases, and multidisciplinary databases-- notes content, print source, language, time coverage, and databank. Two discipline-specific databases (SPIN and PHYSICS BRIEFS) are also discussed. (EJS)

  3. Databases: Beyond the Basics.

    ERIC Educational Resources Information Center

    Whittaker, Robert

    This presented paper offers an elementary description of database characteristics and then provides a survey of databases that may be useful to the teacher and researcher in Slavic and East European languages and literatures. The survey focuses on commercial databases that are available, usable, and needed. Individual databases discussed include:…

  4. Reflective Database Access Control

    ERIC Educational Resources Information Center

    Olson, Lars E.

    2009-01-01

    "Reflective Database Access Control" (RDBAC) is a model in which a database privilege is expressed as a database query itself, rather than as a static privilege contained in an access control list. RDBAC aids the management of database access controls by improving the expressiveness of policies. However, such policies introduce new interactions

  5. Reflective Database Access Control

    ERIC Educational Resources Information Center

    Olson, Lars E.

    2009-01-01

    "Reflective Database Access Control" (RDBAC) is a model in which a database privilege is expressed as a database query itself, rather than as a static privilege contained in an access control list. RDBAC aids the management of database access controls by improving the expressiveness of policies. However, such policies introduce new interactions…

  6. Human Mitochondrial Protein Database

    National Institute of Standards and Technology Data Gateway

    SRD 131 Human Mitochondrial Protein Database (Web, free access)   The Human Mitochondrial Protein Database (HMPDb) provides comprehensive data on mitochondrial and human nuclear encoded proteins involved in mitochondrial biogenesis and function. This database consolidates information from SwissProt, LocusLink, Protein Data Bank (PDB), GenBank, Genome Database (GDB), Online Mendelian Inheritance in Man (OMIM), Human Mitochondrial Genome Database (mtDB), MITOMAP, Neuromuscular Disease Center and Human 2-D PAGE Databases. This database is intended as a tool not only to aid in studying the mitochondrion but in studying the associated diseases.

  7. Medical database security policies.

    PubMed

    Pangalos, G J

    1993-11-01

    Database security plays an important role in the overall security of medical information systems. Security does not only involve fundamental ethical principles such as privacy and confidentiality, but is also an essential prerequisite for effective medical care. The general framework and the requirements for medical database security are presented. The three prominent proposals for medical database security are discussed in some detail, together with specific proposals for medical database security. A number of parameters for a secure medical database development are presented and discussed, and guidelines are given for the development of secure medical database systems. PMID:8295541

  8. Long-term Health and Socioeconomic Impacts of Landscape Fire Emissions in Indonesia

    NASA Astrophysics Data System (ADS)

    Jina, A.; Marlier, M. E.

    2013-12-01

    Among natural disasters, wildfires are perhaps the most complex case of a coupled human-natural system, with both direct and indirect costs to society. A major contributor to these indirect costs is the impact upon health in the short- and long-term. Air pollution from fires is associated with more deaths from cardio-pulmonary diseases, yet little or no research has looked beyond the short-term mortality and morbidity associated with wildfire pollution, particularly in developing countries where impacts may be greatest but monitoring presents a constant challenge. We address this by using an interdisciplinary approach combining modeled air pollution with econometric methods to identify the long-term effects of air pollution on health and cognitive ability. These impacts will persist in society, and can lead to decreased education, loss of earnings, and a suppression of economic activity. We take the case of Indonesia, which is prone to large, catastrophic fires during El Niño conditions. Satellite data partially compensate for the lack of monitoring data for air pollution, but there are still significant gaps in data availability and difficulty in retrieving surface concentrations. In this study, surface fine particulate matter (PM2.5) concentrations at 2x2.5° resolution are obtained from GISS-E2-Puccini (the new version of the NASA GISS ModelE General Circulation Model (GCM)), run with monthly fire emissions from the Global Fire Emissions Database version 3 (GFED3). 24-hour ambient PM2.5 concentrations across Indonesia are matched to geographically and socioeconomic surveys. We find that exposure to high levels of PM2.5 at birth (and in utero) has negative impacts upon physical development of infants. This is associated with health problems later in life, as well as lower educational and labor market outcomes. A one standard deviation increase in ambient air pollution exposure leads to effects comparable to those from indoor air pollution. We also find a negative effect on cognitive ability in adults. The unique data allows us to identify whether it is cumulative exposure, maximum exposure, or exceeding certain thresholds which lead to the largest effects on health. We also test for non-linearity in the response to exposure and for interactions with socioeconomic status. We see worse health outcomes in poorer households, which may contribute the large gradient in health status in Indonesia. Identifying and quantifying these long-term impacts has implications for disaster relief policy in Indonesia, as it demands including populations that may be physically remote from the wildfires themselves. It also changes the cost-benefit analysis of interventions to mitigate the impacts of wildfires. The extra costs associated with these impacts have not been considered in disaster policy, so this research has implications beyond this specific case. It is hoped that the strongly interdisciplinary approach presented herein, of combining physically derived datasets with socioeconomic data, may be applied to identify the effects of many natural hazards in many other settings.

  9. THE ECOTOX DATABASE

    EPA Science Inventory

    The database provides chemical-specific toxicity information for aquatic life, terrestrial plants, and terrestrial wildlife. ECOTOX is a comprehensive ecotoxicology database and is therefore essential for providing and suppoirting high quality models needed to estimate population...

  10. Household Products Database: Pesticides

    MedlinePlus

    ... Names Types of Products Manufacturers Ingredients About the Database FAQ Product Recalls Help Glossary Contact Us More ... holders. Information is extracted from Consumer Product Information Database 2001-2015 by DeLima Associates. All rights reserved. ...

  11. Physiological Information Database (PID)

    EPA Science Inventory

    EPA has developed a physiological information database (created using Microsoft ACCESS) intended to be used in PBPK modeling. The database contains physiological parameter values for humans from early childhood through senescence as well as similar data for laboratory animal spec...

  12. Network II Database

    Energy Science and Technology Software Center (ESTSC)

    1994-11-07

    The Oak Ridge National Laboratory (ORNL) Rail and Barge Network II Database is a representation of the rail and barge system of the United States. The network is derived from the Federal Rail Administration (FRA) rail database.

  13. ECOTOX DATABASE SYSTEM

    EPA Science Inventory

    The ECOTOXicology database is a source for locating single chemical toxicity data for aquatic life, terrestrial plants and wildlife. ECOTOX integrates three toxicology effects databases: AQUIRE (aquatic life), PHYTOTOX (terrestrial plants), and TERRETOX (terrestrial wildlife). Th...

  14. Aviation Safety Issues Database

    NASA Technical Reports Server (NTRS)

    Morello, Samuel A.; Ricks, Wendell R.

    2009-01-01

    The aviation safety issues database was instrumental in the refinement and substantiation of the National Aviation Safety Strategic Plan (NASSP). The issues database is a comprehensive set of issues from an extremely broad base of aviation functions, personnel, and vehicle categories, both nationally and internationally. Several aviation safety stakeholders such as the Commercial Aviation Safety Team (CAST) have already used the database. This broader interest was the genesis to making the database publically accessible and writing this report.

  15. Scopus database: a review

    PubMed Central

    Burnham, Judy F

    2006-01-01

    The Scopus database provides access to STM journal articles and the references included in those articles, allowing the searcher to search both forward and backward in time. The database can be used for collection development as well as for research. This review provides information on the key points of the database and compares it to Web of Science. Neither database is inclusive, but complements each other. If a library can only afford one, choice must be based in institutional needs. PMID:16522216

  16. Plant and Crop Databases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Databases have become an integral part of all aspects of biological research, including basic and applied plant biology. The importance of databases continues to increase as the volume of data from direct and indirect genomics approaches expands. What is not always obvious to users of databases is t...

  17. Mission and Assets Database

    NASA Technical Reports Server (NTRS)

    Baldwin, John; Zendejas, Silvino; Gutheinz, Sandy; Borden, Chester; Wang, Yeou-Fang

    2009-01-01

    Mission and Assets Database (MADB) Version 1.0 is an SQL database system with a Web user interface to centralize information. The database stores flight project support resource requirements, view periods, antenna information, schedule, and forecast results for use in mid-range and long-term planning of Deep Space Network (DSN) assets.

  18. An Introduction to Database Structure and Database Machines.

    ERIC Educational Resources Information Center

    Detweiler, Karen

    1984-01-01

    Enumerates principal management objectives of database management systems (data independence, quality, security, multiuser access, central control) and criteria for comparison (response time, size, flexibility, other features). Conventional database management systems, relational databases, and database machines used for backend processing are

  19. An Introduction to Database Structure and Database Machines.

    ERIC Educational Resources Information Center

    Detweiler, Karen

    1984-01-01

    Enumerates principal management objectives of database management systems (data independence, quality, security, multiuser access, central control) and criteria for comparison (response time, size, flexibility, other features). Conventional database management systems, relational databases, and database machines used for backend processing are…

  20. IDPredictor: predict database links in biomedical database.

    PubMed

    Mehlhorn, Hendrik; Lange, Matthias; Scholz, Uwe; Schreiber, Falk

    2012-01-01

    Knowledge found in biomedical databases, in particular in Web information systems, is a major bioinformatics resource. In general, this biological knowledge is worldwide represented in a network of databases. These data is spread among thousands of databases, which overlap in content, but differ substantially with respect to content detail, interface, formats and data structure. To support a functional annotation of lab data, such as protein sequences, metabolites or DNA sequences as well as a semi-automated data exploration in information retrieval environments, an integrated view to databases is essential. Search engines have the potential of assisting in data retrieval from these structured sources, but fall short of providing a comprehensive knowledge except out of the interlinked databases. A prerequisite of supporting the concept of an integrated data view is to acquire insights into cross-references among database entities. This issue is being hampered by the fact, that only a fraction of all possible cross-references are explicitely tagged in the particular biomedical informations systems. In this work, we investigate to what extend an automated construction of an integrated data network is possible. We propose a method that predicts and extracts cross-references from multiple life science databases and possible referenced data targets. We study the retrieval quality of our method and report on first, promising results. The method is implemented as the tool IDPredictor, which is published under the DOI 10.5447/IPK/2012/4 and is freely available using the URL: http://dx.doi.org/10.5447/IPK/2012/4. PMID:22736059

  1. Long Valley caldera GIS Database

    NASA Astrophysics Data System (ADS)

    Williams, M. J.; Battaglia, M.; Hill, D.; Langbein, J.; Segall, P.

    2002-12-01

    In May of 1980, a strong earthquake swarm that included four magnitude 6 earthquakes struck the southern margin of Long Valley Caldera associated with a 25-cm, dome-shaped uplift of the caldera floor. These events marked the onset of the latest period of caldera unrest that continues to this day. This ongoing unrest includes recurring earthquake swarms and continued dome-shaped uplift of the central section of the caldera (the resurgent dome) accompanied by changes in thermal springs and gas emissions. Analysis of combined gravity and geodetic data confirms the intrusion of silicic magma beneath Long Valley caldera. In 1982, the U.S. Geological Survey under the Volcano Hazards Program began an intensive effort to monitor and study geologic unrest in Long Valley Caldera. This database provides an overview of the studies being conducted by the Long Valley Observatory in Eastern California from 1975 to 2000. The database includes geological, monitoring and topographic datasets related to the Long Valley Caldera, plus a number of USGS publications on Long Valley (e.g., fact-sheets, references). Datasets are available as text files or ArcView shapefiles. Database CD-ROM Table of Contents: - Geological data (digital geologic map) - Monitoring data: Deformation (EDM, GPS, Leveling); Earthquakes; Gravity; Hydrologic; CO2 - Topographic data: DEM, DRG, Landsat 7, Rivers, Roads, Water Bodies - ArcView Project File

  2. 2010 Worldwide Gasification Database

    DOE Data Explorer

    The 2010 Worldwide Gasification Database describes the current world gasification industry and identifies near-term planned capacity additions. The database lists gasification projects and includes information (e.g., plant location, number and type of gasifiers, syngas capacity, feedstock, and products). The database reveals that the worldwide gasification capacity has continued to grow for the past several decades and is now at 70,817 megawatts thermal (MWth) of syngas output at 144 operating plants with a total of 412 gasifiers.

  3. Indexing in temporal databases

    SciTech Connect

    Novikov, B.A.

    1995-03-01

    The concepts of temporal databases and supporting physical structures are discussed. Most of the known access methods for temporal databases are variations of ordinary one-dimensional access methods and actually ignore time-dimensional features. An exception is TSB-trees, which support queries of different types. A modification of TSB-trees based on a trie hashing scheme and exceeding TSB-trees for speed of search in the actual part of a database is described.

  4. IPSec Database Query Acceleration

    NASA Astrophysics Data System (ADS)

    Ferrante, Alberto; Chandra, Satish; Piuri, Vincenzo

    IPSec is a suite of protocols that adds security to communications at the IP level. Protocols within IPSec make extensive use of two databases, namely the Security Policy Database (SPD) and the Security Association Database (SAD). The ability to query the SPD quickly is fundamental as this operation needs to be done for each incoming or outgoing IP packet, even if no IPSec processing needs to be applied on it. This may easily result in millions of query per second in gigabit networks.

  5. ITS-90 Thermocouple Database

    National Institute of Standards and Technology Data Gateway

    SRD 60 NIST ITS-90 Thermocouple Database (Web, free access)   Web version of Standard Reference Database 60 and NIST Monograph 175. The database gives temperature -- electromotive force (emf) reference functions and tables for the letter-designated thermocouple types B, E, J, K, N, R, S and T. These reference functions have been adopted as standards by the American Society for Testing and Materials (ASTM) and the International Electrotechnical Commission (IEC).

  6. Databases for Microbiologists

    PubMed Central

    2015-01-01

    Databases play an increasingly important role in biology. They archive, store, maintain, and share information on genes, genomes, expression data, protein sequences and structures, metabolites and reactions, interactions, and pathways. All these data are critically important to microbiologists. Furthermore, microbiology has its own databases that deal with model microorganisms, microbial diversity, physiology, and pathogenesis. Thousands of biological databases are currently available, and it becomes increasingly difficult to keep up with their development. The purpose of this minireview is to provide a brief survey of current databases that are of interest to microbiologists. PMID:26013493

  7. Nuclear Science References Database

    NASA Astrophysics Data System (ADS)

    Pritychenko, B.; Běták, E.; Singh, B.; Totans, J.

    2014-06-01

    The Nuclear Science References (NSR) database together with its associated Web interface, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 210,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr.

  8. Backing up DMF Databases

    NASA Technical Reports Server (NTRS)

    Cardo, Nicholas P.; Woodrow, Thomas (Technical Monitor)

    1994-01-01

    A complete backup of the Cray Data Migration Facility (DMF) databases should include the data migration databases, all media specific process' (MSP's) databases, and the journal file. The backup should be able to accomplished without impacting users or stopping DMF. The High Speed Processors group at the Numerical Aerodynamics Simulation (NAS) Facility at NASA Ames Research Center undertook the task of finding an effective and efficient way to backup all DMF databases. This has been accomplished by taking advantage of new features introduced in DMF 2.0 and adding a minor modification to the dmdaemon. This paper discusses the investigation and the changes necessary to implement these enhancements.

  9. Databases for LDEF results

    NASA Technical Reports Server (NTRS)

    Bohnhoff-Hlavacek, Gail

    1992-01-01

    One of the objectives of the team supporting the LDEF Systems and Materials Special Investigative Groups is to develop databases of experimental findings. These databases identify the hardware flown, summarize results and conclusions, and provide a system for acknowledging investigators, tracing sources of data, and future design suggestions. To date, databases covering the optical experiments, and thermal control materials (chromic acid anodized aluminum, silverized Teflon blankets, and paints) have been developed at Boeing. We used the Filemaker Pro software, the database manager for the Macintosh computer produced by the Claris Corporation. It is a flat, text-retrievable database that provides access to the data via an intuitive user interface, without tedious programming. Though this software is available only for the Macintosh computer at this time, copies of the databases can be saved to a format that is readable on a personal computer as well. Further, the data can be exported to more powerful relational databases, capabilities, and use of the LDEF databases and describe how to get copies of the database for your own research.

  10. Veterans Administration Databases

    Cancer.gov

    The Veterans Administration Information Resource Center provides database and informatics experts, customer service, expert advice, information products, and web technology to VA researchers and others.

  11. The RECONS 25 Parsec Database

    NASA Astrophysics Data System (ADS)

    Henry, Todd J.; Jao, Wei-Chun; Pewett, Tiffany; Riedel, Adric R.; Silverstein, Michele L.; Slatten, Kenneth J.; Winters, Jennifer G.; Recons Team

    2015-01-01

    The REsearch Consortium On Nearby Stars (RECONS, www.recons.org) Team has been mapping the solar neighborhood since 1994. Nearby stars provide the fundamental framework upon which all of stellar astronomy is based, both for individual stars and stellar populations. The nearest stars are also the primary targets for extrasolar planet searches, and will undoubtedly play key roles in understanding the prevalence and structure of solar systems, and ultimately, in our search for life elsewhere.We have built the RECONS 25 Parsec Database to encourage and enable exploration of the Sun's nearest neighbors. The Database, slated for public release in 2015, contains 3088 stars, brown dwarfs, andexoplanets in 2184 systems as of October 1, 2014. All of these systems have accurate trigonometric parallaxes in the refereed literature placing them closer than 25.0 parsecs, i.e., parallaxes greater than 40 mas with errors less than 10 mas. Carefully vetted astrometric, photometric, and spectroscopic data are incorporated intothe Database from reliable sources, including significant original data collected by members of the RECONS Team.Current exploration of the solar neighborhood by RECONS, enabled by the Database, focuses on the ubiquitous red dwarfs, including: assessing the stellar companion population of ~1200 red dwarfs (Winters), investigating the astrophysical causes that spread red dwarfs of similar temperatures by a factor of 16 in luminosity (Pewett), and canvassing ~3000 red dwarfs for excess emission due to unseen companions and dust (Silverstein). In addition, a decade long astrometric survey of ~500 red dwarfs in the southern sky has begun, in an effort to understand the stellar, brown dwarf, and planetary companion populations for the stars that make up at least 75% of all stars in the Universe.This effort has been supported by the NSF through grants AST-0908402, AST-1109445, and AST-1412026, and via observations made possible by the SMARTS Consortium.

  12. Biological Macromolecule Crystallization Database

    National Institute of Standards and Technology Data Gateway

    SRD 21 Biological Macromolecule Crystallization Database (Web, free access)   The Biological Macromolecule Crystallization Database and NASA Archive for Protein Crystal Growth Data (BMCD) contains the conditions reported for the crystallization of proteins and nucleic acids used in X-ray structure determinations and archives the results of microgravity macromolecule crystallization studies.

  13. HIV Structural Database

    National Institute of Standards and Technology Data Gateway

    SRD 102 HIV Structural Database (Web, free access)   The HIV Protease Structural Database is an archive of experimentally determined 3-D structures of Human Immunodeficiency Virus 1 (HIV-1), Human Immunodeficiency Virus 2 (HIV-2) and Simian Immunodeficiency Virus (SIV) Proteases and their complexes with inhibitors or products of substrate cleavage.

  14. First Look: TRADEMARKSCAN Database.

    ERIC Educational Resources Information Center

    Fernald, Anne Conway; Davidson, Alan B.

    1984-01-01

    Describes database produced by Thomson and Thomson and available on Dialog which contains over 700,000 records representing all active federal trademark registrations and applications for registrations filed in United States Patent and Trademark Office. A typical record, special features, database applications, learning to use TRADEMARKSCAN, and

  15. Dictionary as Database.

    ERIC Educational Resources Information Center

    Painter, Derrick

    1996-01-01

    Discussion of dictionaries as databases focuses on the digitizing of The Oxford English dictionary (OED) and the use of Standard Generalized Mark-Up Language (SGML). Topics include the creation of a consortium to digitize the OED, document structure, relational databases, text forms, sequence, and discourse. (LRW)

  16. Assignment to database industy

    NASA Astrophysics Data System (ADS)

    Abe, Kohichiroh

    Various kinds of databases are considered to be essential part in future large sized systems. Information provision only by databases is also considered to be growing as the market becomes mature. This paper discusses how such circumstances have been built and will be developed from now on.

  17. BioImaging Database

    SciTech Connect

    David Nix, Lisa Simirenko

    2006-10-25

    The Biolmaging Database (BID) is a relational database developed to store the data and meta-data for the 3D gene expression in early Drosophila embryo development on a cellular level. The schema was written to be used with the MySQL DBMS but with minor modifications can be used on any SQL compliant relational DBMS.

  18. Build Your Own Database.

    ERIC Educational Resources Information Center

    Jacso, Peter; Lancaster, F. W.

    This book is intended to help librarians and others to produce databases of better value and quality, especially if they have had little previous experience in database construction. Drawing upon almost 40 years of experience in the field of information retrieval, this book emphasizes basic principles and approaches rather than in-depth and…

  19. The intelligent database machine

    NASA Technical Reports Server (NTRS)

    Yancey, K. E.

    1985-01-01

    The IDM data base was compared with the data base crack to determine whether IDM 500 would better serve the needs of the MSFC data base management system than Oracle. The two were compared and the performance of the IDM was studied. Implementations that work best on which database are implicated. The choice is left to the database administrator.

  20. Database Reviews: Legal Information.

    ERIC Educational Resources Information Center

    Seiser, Virginia

    Detailed reviews of two legal information databases--"Laborlaw I" and "Legal Resource Index"--are presented in this paper. Each database review begins with a bibliographic entry listing the title; producer; vendor; cost per hour contact time; offline print cost per citation; time period covered; frequency of updates; and size of file. A detailed…

  1. Atomic Spectra Database (ASD)

    National Institute of Standards and Technology Data Gateway

    SRD 78 NIST Atomic Spectra Database (ASD) (Web, free access)   This database provides access and search capability for NIST critically evaluated data on atomic energy levels, wavelengths, and transition probabilities that are reasonably up-to-date. The NIST Atomic Spectroscopy Data Center has carried out these critical compilations.

  2. Ionic Liquids Database- (ILThermo)

    National Institute of Standards and Technology Data Gateway

    SRD 147 Ionic Liquids Database- (ILThermo) (Web, free access)   IUPAC Ionic Liquids Database, ILThermo, is a free web research tool that allows users worldwide to access an up-to-date data collection from the publications on experimental investigations of thermodynamic, and transport properties of ionic liquids as well as binary and ternary mixtures containing ionic liquids.

  3. Structural Ceramics Database

    National Institute of Standards and Technology Data Gateway

    SRD 30 NIST Structural Ceramics Database (Web, free access)   The NIST Structural Ceramics Database (WebSCD) provides evaluated materials property data for a wide range of advanced ceramics known variously as structural ceramics, engineering ceramics, and fine ceramics.

  4. Knowledge Discovery in Databases.

    ERIC Educational Resources Information Center

    Norton, M. Jay

    1999-01-01

    Knowledge discovery in databases (KDD) revolves around the investigation and creation of knowledge, processes, algorithms, and mechanisms for retrieving knowledge from data collections. The article is an introductory overview of KDD. The rationale and environment of its development and applications are discussed. Issues related to database design…

  5. Knowledge Discovery in Databases.

    ERIC Educational Resources Information Center

    Norton, M. Jay

    1999-01-01

    Knowledge discovery in databases (KDD) revolves around the investigation and creation of knowledge, processes, algorithms, and mechanisms for retrieving knowledge from data collections. The article is an introductory overview of KDD. The rationale and environment of its development and applications are discussed. Issues related to database design

  6. Database Searching by Managers.

    ERIC Educational Resources Information Center

    Arnold, Stephen E.

    Managers and executives need the easy and quick access to business and management information that online databases can provide, but many have difficulty articulating their search needs to an intermediary. One possible solution would be to encourage managers and their immediate support staff members to search textual databases directly as they now…

  7. A Quality System Database

    NASA Technical Reports Server (NTRS)

    Snell, William H.; Turner, Anne M.; Gifford, Luther; Stites, William

    2010-01-01

    A quality system database (QSD), and software to administer the database, were developed to support recording of administrative nonconformance activities that involve requirements for documentation of corrective and/or preventive actions, which can include ISO 9000 internal quality audits and customer complaints.

  8. National Vulnerability Database (NVD)

    National Institute of Standards and Technology Data Gateway

    National Vulnerability Database (NVD) (Web, free access)   NVD is a comprehensive cyber security vulnerability database that integrates all publicly available U.S. Government vulnerability resources and provides references to industry resources. It is based on and synchronized with the CVE vulnerability naming standard.

  9. Morchella MLST database

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Welcome to the Morchella MLST database. This dedicated database was set up at the CBS-KNAW Biodiversity Center by Vincent Robert in February 2012, using BioloMICS software (Robert et al., 2011), to facilitate DNA sequence-based identifications of Morchella species via the Internet. The current datab...

  10. Protein sequence databases.

    PubMed

    Apweiler, Rolf; Bairoch, Amos; Wu, Cathy H

    2004-02-01

    A variety of protein sequence databases exist, ranging from simple sequence repositories, which store data with little or no manual intervention in the creation of the records, to expertly curated universal databases that cover all species and in which the original sequence data are enhanced by the manual addition of further information in each sequence record. As the focus of researchers moves from the genome to the proteins encoded by it, these databases will play an even more important role as central comprehensive resources of protein information. Several the leading protein sequence databases are discussed here, with special emphasis on the databases now provided by the Universal Protein Knowledgebase (UniProt) consortium. PMID:15036160

  11. [Glaucoma Service Database].

    PubMed

    Jamrozy-Witkowska, Agnieszka M; Witkowski, Tomasz; Krzyzanowska, Patrycja

    2003-01-01

    We present the common problems related to clinical databases. The Glaucoma Service Database created in our clinic is an attempt of developing the optimal medical database. The system organizes our repository of clinical data. It consist of 3 modules: 1) the users list with predefined privileges and rights, 2) lists of coded data for further use, that facilitate filling in the fields, 3) clinical details of all patients. The user interface of our database is very simply, thus it is very easy to use it even by unskilled staff. The accuracy of data is protected by system's internal algorithms. It could be used to investigate clinical epidemiology, risk assessment, post-marketing surveillance of drugs, practice variation and decision analysis. Data from Glaucoma Service Database can also help in the management of health service. PMID:14969171

  12. Cascadia Tsunami Deposit Database

    USGS Publications Warehouse

    Peters, Robert; Jaffe, Bruce; Gelfenbaum, Guy; Peterson, Curt

    2003-01-01

    The Cascadia Tsunami Deposit Database contains data on the location and sedimentological properties of tsunami deposits found along the Cascadia margin. Data have been compiled from 52 studies, documenting 59 sites from northern California to Vancouver Island, British Columbia that contain known or potential tsunami deposits. Bibliographical references are provided for all sites included in the database. Cascadia tsunami deposits are usually seen as anomalous sand layers in coastal marsh or lake sediments. The studies cited in the database use numerous criteria based on sedimentary characteristics to distinguish tsunami deposits from sand layers deposited by other processes, such as river flooding and storm surges. Several studies cited in the database contain evidence for more than one tsunami at a site. Data categories include age, thickness, layering, grainsize, and other sedimentological characteristics of Cascadia tsunami deposits. The database documents the variability observed in tsunami deposits found along the Cascadia margin.

  13. The Mars Express limbs observations database

    NASA Astrophysics Data System (ADS)

    Gondet, Brigitte; Bibring, Jean-Pierre; Montmessin, Franck; Giuranna, Marco; Hoffmann, Harald; Cardesin, Alejandro

    2015-04-01

    The capability to orient Mars Express allows a great diversity of observations modes, in particular nadir and limb. During day and night limb's observations, 4 out of 7 MEX instruments (the spectrometers: SPICAM, OMEGA, PFS and the high-resolution camera HRSC) work together to provide spectra (.12 µm to 45 µm) of the Martian atmosphere, at each altitude step, with the associated image. We will present the limbs database of more than 10 years in orbit with striking results (dust and clouds detached layers, day and night emissions). The database is now accessible to the scientific community via the ESA/PSA website (www.rssd.esa.int/PSA).

  14. Hazard Analysis Database Report

    SciTech Connect

    GAULT, G.W.

    1999-10-13

    The Hazard Analysis Database was developed in conjunction with the hazard analysis activities conducted in accordance with DOE-STD-3009-94, Preparation Guide for US Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports, for the Tank Waste Remediation System (TWRS) Final Safety Analysis Report (FSAR). The FSAR is part of the approved TWRS Authorization Basis (AB). This document describes, identifies, and defines the contents and structure of the TWRS FSAR Hazard Analysis Database and documents the configuration control changes made to the database. The TWRS Hazard Analysis Database contains the collection of information generated during the initial hazard evaluations and the subsequent hazard and accident analysis activities. The database supports the preparation of Chapters 3,4, and 5 of the TWRS FSAR and the USQ process and consists of two major, interrelated data sets: (1) Hazard Evaluation Database--Data from the results of the hazard evaluations; and (2) Hazard Topography Database--Data from the system familiarization and hazard identification.

  15. Database similarity searches.

    PubMed

    Plewniak, Frédéric

    2008-01-01

    With genome sequencing projects producing huge amounts of sequence data, database sequence similarity search has become a central tool in bioinformatics to identify potentially homologous sequences. It is thus widely used as an initial step for sequence characterization and annotation, phylogeny, genomics, transcriptomics, and proteomics studies. Database similarity search is based upon sequence alignment methods also used in pairwise sequence comparison. Sequence alignment can be global (whole sequence alignment) or local (partial sequence alignment) and there are algorithms to find the optimal alignment given particular comparison criteria. However, as database searches require the comparison of the query sequence with every single sequence in the database, heuristic algorithms have been designed to reduce the time required to build an alignment that has a reasonable chance to be the best one. Such algorithms have been implemented as fast and efficient programs (Blast, FastA) available in different types to address different kinds of problems. After searching the appropriate database, similarity search programs produce a list of similar sequences and local alignments. These results should be carefully examined before coming to any conclusion, as many traps await the similarity seeker: paralogues, multidomain proteins, pseudogenes, etc. This chapter presents points that should always be kept in mind when performing database similarity searches for various goals. It ends with a practical example of sequence characterization from a single protein database search using Blast. PMID:18592192

  16. ResPlan Database

    NASA Technical Reports Server (NTRS)

    Zellers, Michael L.

    2003-01-01

    The main project I was involved in was new application development for the existing CIS0 Database (ResPlan). This database application was developed in Microsoft Access. Initial meetings with Greg Follen, Linda McMillen, Griselle LaFontaine and others identified a few key weaknesses with the existing database. The weaknesses centered around that while the database correctly modeled the structure of Programs, Projects and Tasks, once the data was entered, the database did not capture any dynamic status information, and as such was of limited usefulness. After the initial meetings my goals were identified as follows: Enhance the ResPlan Database to include qualitative and quantitative status information about the Programs, Projects and Tasks Train staff members about the ResPlan database from both the user perspective and the developer perspective Give consideration to a Web Interface for reporting. Initially, the thought was that there would not be adequate time to actually develop the Web Interface, Greg wanted it understood that this was an eventual goal and as such should be a consideration throughout the development process.

  17. Hazard Analysis Database Report

    SciTech Connect

    GRAMS, W.H.

    2000-12-28

    The Hazard Analysis Database was developed in conjunction with the hazard analysis activities conducted in accordance with DOE-STD-3009-94, Preparation Guide for U S . Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports, for HNF-SD-WM-SAR-067, Tank Farms Final Safety Analysis Report (FSAR). The FSAR is part of the approved Authorization Basis (AB) for the River Protection Project (RPP). This document describes, identifies, and defines the contents and structure of the Tank Farms FSAR Hazard Analysis Database and documents the configuration control changes made to the database. The Hazard Analysis Database contains the collection of information generated during the initial hazard evaluations and the subsequent hazard and accident analysis activities. The Hazard Analysis Database supports the preparation of Chapters 3 ,4 , and 5 of the Tank Farms FSAR and the Unreviewed Safety Question (USQ) process and consists of two major, interrelated data sets: (1) Hazard Analysis Database: Data from the results of the hazard evaluations, and (2) Hazard Topography Database: Data from the system familiarization and hazard identification.

  18. Database for propagation models

    NASA Technical Reports Server (NTRS)

    Kantak, Anil V.

    1991-01-01

    A propagation researcher or a systems engineer who intends to use the results of a propagation experiment is generally faced with various database tasks such as the selection of the computer software, the hardware, and the writing of the programs to pass the data through the models of interest. This task is repeated every time a new experiment is conducted or the same experiment is carried out at a different location generating different data. Thus the users of this data have to spend a considerable portion of their time learning how to implement the computer hardware and the software towards the desired end. This situation may be facilitated considerably if an easily accessible propagation database is created that has all the accepted (standardized) propagation phenomena models approved by the propagation research community. Also, the handling of data will become easier for the user. Such a database construction can only stimulate the growth of the propagation research it if is available to all the researchers, so that the results of the experiment conducted by one researcher can be examined independently by another, without different hardware and software being used. The database may be made flexible so that the researchers need not be confined only to the contents of the database. Another way in which the database may help the researchers is by the fact that they will not have to document the software and hardware tools used in their research since the propagation research community will know the database already. The following sections show a possible database construction, as well as properties of the database for the propagation research.

  19. The Gaia Parameter Database

    NASA Astrophysics Data System (ADS)

    de Bruijne, J. H. J.; Lammers, U.; Perryman, M. A. C.

    2005-01-01

    The parallel development of many aspects of a complex mission like Gaia, which includes numerous participants in ESA, industrial companies, and a large and active scientific collaboration throughout Europe, makes keeping track of the many design changes, instrument and operational complexities, and numerical values for the data analysis a very challenging problem. A comprehensive, easily-accessible, up-to-date, and definitive compilation of a large range of numerical quantities is required, and the Gaia parameter database has been established to satisfy these needs. The database is a centralised repository containing, besides mathematical, physical, and astronomical constants, many satellite and subsystem design parameters. At the end of 2004, more than 1600 parameters had been included. Version control has been implemented, providing, next to a `live' version with the most recent parameters, well-defined reference versions of the full database contents. The database can be queried or browsed using a regular Web browser (http://www.rssd.esa.int/Gaia/paramdb). Query results are formated by default in HTML. Data can also be retrieved as Fortran-77, Fortran-90, Java, ANSIC, C++, or XML structures for direct inclusion into software codes in these languages. The idea is that all collaborating scientists can use the database parameters and values, once retrieved, directly linked to computational routines. An off-line access mode is also available, enabling users to automatically download the contents of the database. The database will be maintained actively, and significant extensions of the contents are planned. Consistent use in the future of the database by the Gaia community at large, including all industrial teams, will ensure correct numerical values throughout the complex software systems being built up as details of the Gaia design develop. The database is already being used for the telemetry simulation chain in ESTEC, and in the data simulations for GDAAS2.

  20. Numeric Databases in the Sciences.

    ERIC Educational Resources Information Center

    Meschel, S. V.

    1984-01-01

    Provides exploration into types of numeric databases available (also known as source databases, nonbibliographic databases, data-files, data-banks, fact banks); examines differences and similarities between bibliographic and numeric databases; identifies disciplines that utilize numeric databases; and surveys representative examples in the…

  1. Databases for materials selection

    SciTech Connect

    1996-06-01

    The Cambridge Materials Selector (CMS2.0) materials database was developed by the Engineering Dept. at Cambridge University in the United Kingdom. This database makes it possible to select a material for a specific application from essentially all classes of materials. Genera, Predict, and Socrates software programs from CLI International, Houston, Texas, automate materials selection and corrosion problem-solving tasks. They are said to significantly reduce the time necessary to select a suitable material and/or to assess a corrosion problem and reach cost-effective solutions. This article describes both databases and tells how to use them.

  2. Phase Equilibria Diagrams Database

    National Institute of Standards and Technology Data Gateway

    SRD 31 NIST/ACerS Phase Equilibria Diagrams Database (PC database for purchase)   The Phase Equilibria Diagrams Database contains commentaries and more than 21,000 diagrams for non-organic systems, including those published in all 21 hard-copy volumes produced as part of the ACerS-NIST Phase Equilibria Diagrams Program (formerly titled Phase Diagrams for Ceramists): Volumes I through XIV (blue books); Annuals 91, 92, 93; High Tc Superconductors I & II; Zirconium & Zirconia Systems; and Electronic Ceramics I. Materials covered include oxides as well as non-oxide systems such as chalcogenides and pnictides, phosphates, salt systems, and mixed systems of these classes.

  3. International Comparisions Database

    National Institute of Standards and Technology Data Gateway

    International Comparisions Database (Web, free access)   The International Comparisons Database (ICDB) serves the U.S. and the Inter-American System of Metrology (SIM) with information based on Appendices B (International Comparisons), C (Calibration and Measurement Capabilities) and D (List of Participating Countries) of the Comit� International des Poids et Mesures (CIPM) Mutual Recognition Arrangement (MRA). The official source of the data is The BIPM key comparison database. The ICDB provides access to results of comparisons of measurements and standards organized by the consultative committees of the CIPM and the Regional Metrology Organizations.

  4. JICST Factual Database(2)

    NASA Astrophysics Data System (ADS)

    Araki, Keisuke

    The computer programme, which builds atom-bond connection tables from nomenclatures, is developed. Chemical substances with their nomenclature and varieties of trivial names or experimental code numbers are inputted. The chemical structures of the database are stereospecifically stored and are able to be searched and displayed according to stereochemistry. Source data are from laws and regulations of Japan, RTECS of US and so on. The database plays a central role within the integrated fact database service of JICST and makes interrelational retrieval possible.

  5. AeroCOM Biomass Burning Emissions Experiment-Overview

    NASA Astrophysics Data System (ADS)

    Petrenko, M. M.; Chin, M.; Kahn, R. A.; Val Martin, M.

    2014-12-01

    Biomass burning (BB) is one of the major sources of optically and chemically potent carbonaceous aerosols, gaseous aerosol precursors, and volatile organic compounds. It is, therefore, important to represent these emissions as accurately as possible in the global and regional models. To correctly simulate BB emissions from a fire, the model needs two key inputs: emission source strength for the fire and the emission injection height. Based on pilot studies of injection height by M. Val Martin et al. (2010, 2012), and of source strength by M. Petrenko et al. (2012), we proposed an AeroCom-coordinated multi-model BB experiment. The core objectives of the experiment are: To inter-compare and quantify the accuracy and diversity of the AeroCom model simulated BB AOD using a common emissions inventory. To propose a region-by-region emission correction scheme based on the comparisons of model output with satellite snapshots of smoke-plume optical depth from the MODIS and MISR instruments. This will allow us to bring the widely used GFED v3 emissions inventory to the levels needed to improve model-observation comparisons. To test smoke injection height-emission intensity relationships used in global models against MISR multi-angle smoke-plume-height retrievals. With the first stage of the BB experiment focused on the source strength, this talk will provide an update on development and testing the method of using satellite-measured aerosol optical depth snapshots to constrain BB aerosol emissions in the global models. The global datasets of fire-and-smoke events, observed by MISR and MODIS during 2006, 2007 and 2008, to be used for model-satellite comparisons, will also be described. These events were selected according to a number of criteria to be suitable for model-observation comparison at the scales of global model resolution. In addition, we will showcase preliminary results of model inter-comparisons within the BB experiment, outline plans for future output analysis, and summarize the expected results of this experiment.

  6. NCCDPHP PUBLICATION DATABASE

    EPA Science Inventory

    This database provides bibliographic citations and abstracts of publications produced by the CDC's National Center for Chronic Disease Prevention and Health Promotion (NCCDPHP) including journal articles, monographs, book chapters, reports, policy documents, and fact sheets. Full...

  7. TREATABILITY DATABASE DESCRIPTION

    EPA Science Inventory

    The Drinking Water Treatability Database (TDB) presents referenced information on the control of contaminants in drinking water. It allows drinking water utilities, first responders to spills or emergencies, treatment process designers, research organizations, academics, regulato...

  8. THE CTEPP DATABASE

    EPA Science Inventory

    The CTEPP (Children's Total Exposure to Persistent Pesticides and Other Persistent Organic Pollutants) database contains a wealth of data on children's aggregate exposures to pollutants in their everyday surroundings. Chemical analysis data for the environmental media and ques...

  9. Nuclear Science References Database

    SciTech Connect

    Pritychenko, B.; Běták, E.; Singh, B.; Totans, J.

    2014-06-15

    The Nuclear Science References (NSR) database together with its associated Web interface, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 210,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center (http://www.nndc.bnl.gov/nsr) and the International Atomic Energy Agency (http://www-nds.iaea.org/nsr)

  10. Requirements Management Database

    Energy Science and Technology Software Center (ESTSC)

    2009-08-13

    This application is a simplified and customized version of the RBA and CTS databases to capture federal, site, and facility requirements, link to actions that must be performed to maintain compliance with their contractual and other requirements.

  11. Chemical Kinetics Database

    National Institute of Standards and Technology Data Gateway

    SRD 17 NIST Chemical Kinetics Database (Web, free access)   The NIST Chemical Kinetics Database includes essentially all reported kinetics results for thermal gas-phase chemical reactions. The database is designed to be searched for kinetics data based on the specific reactants involved, for reactions resulting in specified products, for all the reactions of a particular species, or for various combinations of these. In addition, the bibliography can be searched by author name or combination of names. The database contains in excess of 38,000 separate reaction records for over 11,700 distinct reactant pairs. These data have been abstracted from over 12,000 papers with literature coverage through early 2000.

  12. Enhancing medical database security.

    PubMed

    Pangalos, G; Khair, M; Bozios, L

    1994-08-01

    A methodology for the enhancement of database security in a hospital environment is presented in this paper which is based on both the discretionary and the mandatory database security policies. In this way the advantages of both approaches are combined to enhance medical database security. An appropriate classification of the different types of users according to their different needs and roles and a User Role Definition Hierarchy has been used. The experience obtained from the experimental implementation of the proposed methodology in a major general hospital is briefly discussed. The implementation has shown that the combined discretionary and mandatory security enforcement effectively limits the unauthorized access to the medical database, without severely restricting the capabilities of the system. PMID:7829977

  13. The PHARMSEARCH database.

    PubMed

    O'Hara, M P; Pagis, C

    1991-02-01

    PHARMSEARCH, a database produced by the French Patent and Trademark Office (INPI), covers pharmaceutical patents issued by the Europeans, French, and United States patent offices from November 1986 onward. PHARMSEARCH is composed of MPHARM, a structure file searchable using Markush DARC software, and PHARM, the companion bibliographic file. Markush structures claimed in the patent documents are entered into the database as variable generic structures. Specific structures are also included in the database, when they are not part of a Markush structure in the patent document. Chemical index terms describe all moieties of the structure. Indexing also describes the therapeutic activities and preparation processes for the compounds. The indexing policies used in the production of this database are described. PMID:2026662

  14. ARTI Refrigerant Database

    SciTech Connect

    Calm, J.M.

    1995-06-01

    The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

  15. ARTI Refrigerant Database

    SciTech Connect

    Calm, J.M.

    1995-02-01

    The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase-out of chemical compounds of environmental concern.

  16. ARTI Refrigerant Database

    SciTech Connect

    Calm, J.M.

    1994-05-27

    The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

  17. Database computing in HEP

    NASA Technical Reports Server (NTRS)

    Day, C. T.; Loken, S.; Macfarlane, J. F.; May, E.; Lifka, D.; Lusk, E.; Price, L. E.; Baden, A.; Grossman, R.; Qin, X.

    1992-01-01

    The major SSC experiments are expected to produce up to 1 Petabyte of data per year each. Once the primary reconstruction is completed by farms of inexpensive processors, I/O becomes a major factor in further analysis of the data. We believe that the application of database techniques can significantly reduce the I/O performed in these analyses. We present examples of such I/O reductions in prototypes based on relational and object-oriented databases of CDF data samples.

  18. Database computing in HEP

    SciTech Connect

    Day, C.T.; Loken, S.; MacFarlane, J.F. ); May, E.; Lifka, D.; Lusk, E.; Price, L.E. ); Baden, A. . Dept. of Physics); Grossman, R.; Qin, X. . Dept. of Mathematics, Statistics and Computer Science); Cormell, L.; Leibold, P.; Liu, D

    1992-01-01

    The major SSC experiments are expected to produce up to 1 Petabyte of data per year each. Once the primary reconstruction is completed by farms of inexpensive processors. I/O becomes a major factor in further analysis of the data. We believe that the application of database techniques can significantly reduce the I/O performed in these analyses. We present examples of such I/O reductions in prototype based on relational and object-oriented databases of CDF data samples.

  19. Human mapping databases.

    PubMed

    Talbot, C; Cuticchia, A J

    2001-05-01

    This unit concentrates on the data contained within two human genome databasesGDB (Genome Database) and OMIM (Online Mendelian Inheritance in Man)and includes discussion of different methods for submitting and accessing data. An understanding of electronic mail, FTP, and the use of a World Wide Web (WWW) navigational tool such as Netscape or Internet Explorer is a prerequisite for utilizing the information in this unit. PMID:18428234

  20. Querying genomic databases

    SciTech Connect

    Baehr, A.; Hagstrom, R.; Joerg, D.; Overbeek, R.

    1991-09-01

    A natural-language interface has been developed that retrieves genomic information by using a simple subset of English. The interface spares the biologist from the task of learning database-specific query languages and computer programming. Currently, the interface deals with the E. coli genome. It can, however, be readily extended and shows promise as a means of easy access to other sequenced genomic databases as well.

  1. Steam Properties Database

    National Institute of Standards and Technology Data Gateway

    SRD 10 NIST/ASME Steam Properties Database (PC database for purchase)   Based upon the International Association for the Properties of Water and Steam (IAPWS) 1995 formulation for the thermodynamic properties of water and the most recent IAPWS formulations for transport and other properties, this updated version provides water properties over a wide range of conditions according to the accepted international standards.

  2. SSME environment database development

    NASA Technical Reports Server (NTRS)

    Reardon, John

    1987-01-01

    The internal environment of the Space Shuttle Main Engine (SSME) is being determined from hot firings of the prototype engines and from model tests using either air or water as the test fluid. The objectives are to develop a database system to facilitate management and analysis of test measurements and results, to enter available data into the the database, and to analyze available data to establish conventions and procedures to provide consistency in data normalization and configuration geometry references.

  3. Open systems and databases

    SciTech Connect

    Martire, G.S. ); Nuttall, D.J.H. )

    1993-05-01

    This paper is part of a series of papers invited by the IEEE POWER CONTROL CENTER WORKING GROUP concerning the changing designs of modern control centers. Papers invited by the Working Group discuss the following issues: Benefits of Openness, Criteria for Evaluating Open EMS Systems, Hardware Design, Configuration Management, Security, Project Management, Databases, SCADA, Inter- and Intra-System Communications and Man-Machine Interfaces,'' The goal of this paper is to provide an introduction to the issues pertaining to Open Systems and Databases.'' The intent is to assist understanding of some of the underlying factors that effect choices that must be made when selecting a database system for use in a control room environment. This paper describes and compares the major database information models which are in common use for database systems and provides an overview of SQL. A case for the control center community to follow the workings of the non-formal standards bodies is presented along with possible uses and the benefits of commercially available databases within the control center. The reasons behind the emergence of industry supported standards organizations such as the Open Software Foundation (OSF) and SQL Access are presented.

  4. Crude Oil Analysis Database

    DOE Data Explorer

    Shay, Johanna Y.

    The composition and physical properties of crude oil vary widely from one reservoir to another within an oil field, as well as from one field or region to another. Although all oils consist of hydrocarbons and their derivatives, the proportions of various types of compounds differ greatly. This makes some oils more suitable than others for specific refining processes and uses. To take advantage of this diversity, one needs access to information in a large database of crude oil analyses. The Crude Oil Analysis Database (COADB) currently satisfies this need by offering 9,056 crude oil analyses. Of these, 8,500 are United States domestic oils. The database contains results of analysis of the general properties and chemical composition, as well as the field, formation, and geographic location of the crude oil sample. [Taken from the Introduction to COAMDATA_DESC.pdf, part of the zipped software and database file at http://www.netl.doe.gov/technologies/oil-gas/Software/database.html] Save the zipped file to your PC. When opened, it will contain PDF documents and a large Excel spreadsheet. It will also contain the database in Microsoft Access 2002.

  5. The Halophile Protein Database

    PubMed Central

    Sharma, Naveen; Farooqi, Mohammad Samir; Chaturvedi, Krishna Kumar; Lal, Shashi Bhushan; Grover, Monendra; Rai, Anil; Pandey, Pankaj

    2014-01-01

    Halophilic archaea/bacteria adapt to different salt concentration, namely extreme, moderate and low. These type of adaptations may occur as a result of modification of protein structure and other changes in different cell organelles. Thus proteins may play an important role in the adaptation of halophilic archaea/bacteria to saline conditions. The Halophile protein database (HProtDB) is a systematic attempt to document the biochemical and biophysical properties of proteins from halophilic archaea/bacteria which may be involved in adaptation of these organisms to saline conditions. In this database, various physicochemical properties such as molecular weight, theoretical pI, amino acid composition, atomic composition, estimated half-life, instability index, aliphatic index and grand average of hydropathicity (Gravy) have been listed. These physicochemical properties play an important role in identifying the protein structure, bonding pattern and function of the specific proteins. This database is comprehensive, manually curated, non-redundant catalogue of proteins. The database currently contains 59 897 proteins properties extracted from 21 different strains of halophilic archaea/bacteria. The database can be accessed through link. Database URL: http://webapp.cabgrid.res.in/protein/ PMID:25468930

  6. Specialist Bibliographic Databases

    PubMed Central

    2016-01-01

    Specialist bibliographic databases offer essential online tools for researchers and authors who work on specific subjects and perform comprehensive and systematic syntheses of evidence. This article presents examples of the established specialist databases, which may be of interest to those engaged in multidisciplinary science communication. Access to most specialist databases is through subscription schemes and membership in professional associations. Several aggregators of information and database vendors, such as EBSCOhost and ProQuest, facilitate advanced searches supported by specialist keyword thesauri. Searches of items through specialist databases are complementary to those through multidisciplinary research platforms, such as PubMed, Web of Science, and Google Scholar. Familiarizing with the functional characteristics of biomedical and nonbiomedical bibliographic search tools is mandatory for researchers, authors, editors, and publishers. The database users are offered updates of the indexed journal lists, abstracts, author profiles, and links to other metadata. Editors and publishers may find particularly useful source selection criteria and apply for coverage of their peer-reviewed journals and grey literature sources. These criteria are aimed at accepting relevant sources with established editorial policies and quality controls. PMID:27134485

  7. Specialist Bibliographic Databases.

    PubMed

    Gasparyan, Armen Yuri; Yessirkepov, Marlen; Voronov, Alexander A; Trukhachev, Vladimir I; Kostyukova, Elena I; Gerasimov, Alexey N; Kitas, George D

    2016-05-01

    Specialist bibliographic databases offer essential online tools for researchers and authors who work on specific subjects and perform comprehensive and systematic syntheses of evidence. This article presents examples of the established specialist databases, which may be of interest to those engaged in multidisciplinary science communication. Access to most specialist databases is through subscription schemes and membership in professional associations. Several aggregators of information and database vendors, such as EBSCOhost and ProQuest, facilitate advanced searches supported by specialist keyword thesauri. Searches of items through specialist databases are complementary to those through multidisciplinary research platforms, such as PubMed, Web of Science, and Google Scholar. Familiarizing with the functional characteristics of biomedical and nonbiomedical bibliographic search tools is mandatory for researchers, authors, editors, and publishers. The database users are offered updates of the indexed journal lists, abstracts, author profiles, and links to other metadata. Editors and publishers may find particularly useful source selection criteria and apply for coverage of their peer-reviewed journals and grey literature sources. These criteria are aimed at accepting relevant sources with established editorial policies and quality controls. PMID:27134485

  8. Drinking Water Database

    NASA Technical Reports Server (NTRS)

    Murray, ShaTerea R.

    2004-01-01

    This summer I had the opportunity to work in the Environmental Management Office (EMO) under the Chemical Sampling and Analysis Team or CS&AT. This team s mission is to support Glenn Research Center (GRC) and EM0 by providing chemical sampling and analysis services and expert consulting. Services include sampling and chemical analysis of water, soil, fbels, oils, paint, insulation materials, etc. One of this team s major projects is the Drinking Water Project. This is a project that is done on Glenn s water coolers and ten percent of its sink every two years. For the past two summers an intern had been putting together a database for this team to record the test they had perform. She had successfully created a database but hadn't worked out all the quirks. So this summer William Wilder (an intern from Cleveland State University) and I worked together to perfect her database. We began be finding out exactly what every member of the team thought about the database and what they would change if any. After collecting this data we both had to take some courses in Microsoft Access in order to fix the problems. Next we began looking at what exactly how the database worked from the outside inward. Then we began trying to change the database but we quickly found out that this would be virtually impossible.

  9. Coke oven emissions

    Integrated Risk Information System (IRIS)

    Coke oven emissions ; CASRN NA Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Assessments for Noncarcinogenic Effects

  10. Future fire emissions associated with projected land use change in Indonesia

    NASA Astrophysics Data System (ADS)

    Marlier, M. E.; DeFries, R. S.; Pennington, D.; Ordway, E.; Nelson, E.; Mickley, L.; Koplitz, S.

    2013-12-01

    Indonesia has experienced rapid land use change in past decades as forests and peatlands are cleared for agricultural development, including oil palm and timber plantations1. Fires are the predominant method of clearing and the subsequent emissions can have important public health impacts by contributing to regional particulate matter and ozone concentrations2. This regional haze was dramatically seen in Singapore during June 2013 due to the transport of emissions from fires in Sumatra. Our study is part of a larger project that will quantify the public health impact of various land use development scenarios for Sumatra over the coming decades. Here, we describe how we translate economic projections of land use change into future fire emissions inventories for GEOS-Chem atmospheric transport simulations. We relate past GFED3 fire emissions3 to detailed 1-km land use change data and MODIS fire radiative power observations, and apply these relationships to future estimates of land use change. The goal of this interdisciplinary project is to use modeling results to interact with policy makers and influence development strategies in ways that protect public health. 1Miettinen et al. 2011. Deforestation rates in insular Southeast Asia between 2000 and 2010. Glob. Change Biol.,17 (7), 2261-2270. 2Marlier et al. 2013. El Niño and health risks from landscape fire emissions in southeast Asia. Nature Clim. Change, 3, 131-136. 3van der Werf et al. 2010. Global fire emissions and the contribution of deforestation, savanna, forest, agricultural, and peat fires (1997-2009). Atmos. Chem. Physics, 10 (23), 11707-11735.

  11. ADANS database specification

    SciTech Connect

    1997-01-16

    The purpose of the Air Mobility Command (AMC) Deployment Analysis System (ADANS) Database Specification (DS) is to describe the database organization and storage allocation and to provide the detailed data model of the physical design and information necessary for the construction of the parts of the database (e.g., tables, indexes, rules, defaults). The DS includes entity relationship diagrams, table and field definitions, reports on other database objects, and a description of the ADANS data dictionary. ADANS is the automated system used by Headquarters AMC and the Tanker Airlift Control Center (TACC) for airlift planning and scheduling of peacetime and contingency operations as well as for deliberate planning. ADANS also supports planning and scheduling of Air Refueling Events by the TACC and the unit-level tanker schedulers. ADANS receives input in the form of movement requirements and air refueling requests. It provides a suite of tools for planners to manipulate these requirements/requests against mobility assets and to develop, analyze, and distribute schedules. Analysis tools are provided for assessing the products of the scheduling subsystems, and editing capabilities support the refinement of schedules. A reporting capability provides formatted screen, print, and/or file outputs of various standard reports. An interface subsystem handles message traffic to and from external systems. The database is an integral part of the functionality summarized above.

  12. Shuttle Hypervelocity Impact Database

    NASA Technical Reports Server (NTRS)

    Hyde, James L.; Christiansen, Eric L.; Lear, Dana M.

    2011-01-01

    With three missions outstanding, the Shuttle Hypervelocity Impact Database has nearly 3000 entries. The data is divided into tables for crew module windows, payload bay door radiators and thermal protection system regions, with window impacts compromising just over half the records. In general, the database provides dimensions of hypervelocity impact damage, a component level location (i.e., window number or radiator panel number) and the orbiter mission when the impact occurred. Additional detail on the type of particle that produced the damage site is provided when sampling data and definitive analysis results are available. Details and insights on the contents of the database including examples of descriptive statistics will be provided. Post flight impact damage inspection and sampling techniques that were employed during the different observation campaigns will also be discussed. Potential enhancements to the database structure and availability of the data for other researchers will be addressed in the Future Work section. A related database of returned surfaces from the International Space Station will also be introduced.

  13. Shuttle Hypervelocity Impact Database

    NASA Technical Reports Server (NTRS)

    Hyde, James I.; Christiansen, Eric I.; Lear, Dana M.

    2011-01-01

    With three flights remaining on the manifest, the shuttle impact hypervelocity database has over 2800 entries. The data is currently divided into tables for crew module windows, payload bay door radiators and thermal protection system regions, with window impacts compromising just over half the records. In general, the database provides dimensions of hypervelocity impact damage, a component level location (i.e., window number or radiator panel number) and the orbiter mission when the impact occurred. Additional detail on the type of particle that produced the damage site is provided when sampling data and definitive analysis results are available. The paper will provide details and insights on the contents of the database including examples of descriptive statistics using the impact data. A discussion of post flight impact damage inspection and sampling techniques that were employed during the different observation campaigns will be presented. Future work to be discussed will be possible enhancements to the database structure and availability of the data for other researchers. A related database of ISS returned surfaces that are under development will also be introduced.

  14. Indian genetic disease database.

    PubMed

    Pradhan, Sanchari; Sengupta, Mainak; Dutta, Anirban; Bhattacharyya, Kausik; Bag, Sumit K; Dutta, Chitra; Ray, Kunal

    2011-01-01

    Indians, representing about one-sixth of the world population, consist of several thousands of endogamous groups with strong potential for excess of recessive diseases. However, no database is available on Indian population with comprehensive information on the diseases common in the country. To address this issue, we present Indian Genetic Disease Database (IGDD) release 1.0 (http://www.igdd.iicb.res.in)--an integrated and curated repository of growing number of mutation data on common genetic diseases afflicting the Indian populations. Currently the database covers 52 diseases with information on 5760 individuals carrying the mutant alleles of causal genes. Information on locus heterogeneity, type of mutation, clinical and biochemical data, geographical location and common mutations are furnished based on published literature. The database is currently designed to work best with Internet Explorer 8 (optimal resolution 1440 900) and it can be searched based on disease of interest, causal gene, type of mutation and geographical location of the patients or carriers. Provisions have been made for deposition of new data and logistics for regular updation of the database. The IGDD web portal, planned to be made freely available, contains user-friendly interfaces and is expected to be highly useful to the geneticists, clinicians, biologists and patient support groups of various genetic diseases. PMID:21037256

  15. FishTraits Database

    USGS Publications Warehouse

    Angermeier, Paul L.; Frimpong, Emmanuel A.

    2009-01-01

    The need for integrated and widely accessible sources of species traits data to facilitate studies of ecology, conservation, and management has motivated development of traits databases for various taxa. In spite of the increasing number of traits-based analyses of freshwater fishes in the United States, no consolidated database of traits of this group exists publicly, and much useful information on these species is documented only in obscure sources. The largely inaccessible and unconsolidated traits information makes large-scale analysis involving many fishes and/or traits particularly challenging. FishTraits is a database of >100 traits for 809 (731 native and 78 exotic) fish species found in freshwaters of the conterminous United States, including 37 native families and 145 native genera. The database contains information on four major categories of traits: (1) trophic ecology, (2) body size and reproductive ecology (life history), (3) habitat associations, and (4) salinity and temperature tolerances. Information on geographic distribution and conservation status is also included. Together, we refer to the traits, distribution, and conservation status information as attributes. Descriptions of attributes are available here. Many sources were consulted to compile attributes, including state and regional species accounts and other databases.

  16. NASA Records Database

    NASA Technical Reports Server (NTRS)

    Callac, Christopher; Lunsford, Michelle

    2005-01-01

    The NASA Records Database, comprising a Web-based application program and a database, is used to administer an archive of paper records at Stennis Space Center. The system begins with an electronic form, into which a user enters information about records that the user is sending to the archive. The form is smart : it provides instructions for entering information correctly and prompts the user to enter all required information. Once complete, the form is digitally signed and submitted to the database. The system determines which storage locations are not in use, assigns the user s boxes of records to some of them, and enters these assignments in the database. Thereafter, the software tracks the boxes and can be used to locate them. By use of search capabilities of the software, specific records can be sought by box storage locations, accession numbers, record dates, submitting organizations, or details of the records themselves. Boxes can be marked with such statuses as checked out, lost, transferred, and destroyed. The system can generate reports showing boxes awaiting destruction or transfer. When boxes are transferred to the National Archives and Records Administration (NARA), the system can automatically fill out NARA records-transfer forms. Currently, several other NASA Centers are considering deploying the NASA Records Database to help automate their records archives.

  17. VIEWCACHE: An incremental database access method for autonomous interoperable databases

    NASA Technical Reports Server (NTRS)

    Roussopoulos, Nick; Sellis, Timoleon

    1991-01-01

    The objective is to illustrate the concept of incremental access to distributed databases. An experimental database management system, ADMS, which has been developed at the University of Maryland, in College Park, uses VIEWCACHE, a database access method based on incremental search. VIEWCACHE is a pointer-based access method that provides a uniform interface for accessing distributed databases and catalogues. The compactness of the pointer structures formed during database browsing and the incremental access method allow the user to search and do inter-database cross-referencing with no actual data movement between database sites. Once the search is complete, the set of collected pointers pointing to the desired data are dereferenced.

  18. Open Geoscience Database

    NASA Astrophysics Data System (ADS)

    Bashev, A.

    2012-04-01

    Currently there is an enormous amount of various geoscience databases. Unfortunately the only users of the majority of the databases are their elaborators. There are several reasons for that: incompaitability, specificity of tasks and objects and so on. However the main obstacles for wide usage of geoscience databases are complexity for elaborators and complication for users. The complexity of architecture leads to high costs that block the public access. The complication prevents users from understanding when and how to use the database. Only databases, associated with GoogleMaps don't have these drawbacks, but they could be hardly named "geoscience" Nevertheless, open and simple geoscience database is necessary at least for educational purposes (see our abstract for ESSI20/EOS12). We developed a database and web interface to work with them and now it is accessible at maps.sch192.ru. In this database a result is a value of a parameter (no matter which) in a station with a certain position, associated with metadata: the date when the result was obtained; the type of a station (lake, soil etc); the contributor that sent the result. Each contributor has its own profile, that allows to estimate the reliability of the data. The results can be represented on GoogleMaps space image as a point in a certain position, coloured according to the value of the parameter. There are default colour scales and each registered user can create the own scale. The results can be also extracted in *.csv file. For both types of representation one could select the data by date, object type, parameter type, area and contributor. The data are uploaded in *.csv format: Name of the station; Lattitude(dd.dddddd); Longitude(ddd.dddddd); Station type; Parameter type; Parameter value; Date(yyyy-mm-dd). The contributor is recognised while entering. This is the minimal set of features that is required to connect a value of a parameter with a position and see the results. All the complicated data treatment could be conducted in other programs after extraction the filtered data into *.csv file. It makes the database understandable for non-experts. The database employs open data format (*.csv) and wide spread tools: PHP as the program language, MySQL as database management system, JavaScript for interaction with GoogleMaps and JQueryUI for create user interface. The database is multilingual: there are association tables, which connect with elements of the database. In total the development required about 150 hours. The database still has several problems. The main problem is the reliability of the data. Actually it needs an expert system for estimation the reliability, but the elaboration of such a system would take more resources than the database itself. The second problem is the problem of stream selection - how to select the stations that are connected with each other (for example, belong to one water stream) and indicate their sequence. Currently the interface is English and Russian. However it can be easily translated to your language. But some problems we decided. For example problem "the problem of the same station" (sometimes the distance between stations is smaller, than the error of position): when you adding new station to the database our application automatically find station near this place. Also we decided problem of object and parameter type (how to regard "EC" and "electrical conductivity" as the same parameter). This problem has been solved using "associative tables". If you would like to see the interface on your language, just contact us. We should send you the list of terms and phrases for translation on your language. The main advantage of the database is that it is totally open: everybody can see, extract the data from the database and use them for non-commercial purposes with no charge. Registered users can contribute to the database without getting paid. We hope, that it will be widely used first of all for education purposes, but professional scientists could use it also.

  19. ARTI Refrigerant Database

    SciTech Connect

    Calm, J.M.

    1992-04-30

    The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air- conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on R-32, R-123, R-124, R- 125, R-134a, R-141b, R142b, R-143a, R-152a, R-290 (propane), R-717 (ammonia), ethers, and others as well as azeotropic and zeotropic blends of these fluids. It addresses polyalkylene glycol (PAG), ester, and other lubricants. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits.

  20. National Ambient Radiation Database

    SciTech Connect

    Dziuban, J.; Sears, R.

    2003-02-25

    The U.S. Environmental Protection Agency (EPA) recently developed a searchable database and website for the Environmental Radiation Ambient Monitoring System (ERAMS) data. This site contains nationwide radiation monitoring data for air particulates, precipitation, drinking water, surface water and pasteurized milk. This site provides location-specific as well as national information on environmental radioactivity across several media. It provides high quality data for assessing public exposure and environmental impacts resulting from nuclear emergencies and provides baseline data during routine conditions. The database and website are accessible at www.epa.gov/enviro/. This site contains (1) a query for the general public which is easy to use--limits the amount of information provided, but includes the ability to graph the data with risk benchmarks and (2) a query for a more technical user which allows access to all of the data in the database, (3) background information on ER AMS.

  1. The PROSITE database.

    PubMed

    Hulo, Nicolas; Bairoch, Amos; Bulliard, Virginie; Cerutti, Lorenzo; De Castro, Edouard; Langendijk-Genevaux, Petra S; Pagni, Marco; Sigrist, Christian J A

    2006-01-01

    The PROSITE database consists of a large collection of biologically meaningful signatures that are described as patterns or profiles. Each signature is linked to a documentation that provides useful biological information on the protein family, domain or functional site identified by the signature. The PROSITE database is now complemented by a series of rules that can give more precise information about specific residues. During the last 2 years, the documentation and the ScanProsite web pages were redesigned to add more functionalities. The latest version of PROSITE (release 19.11 of September 27, 2005) contains 1329 patterns and 552 profile entries. Over the past 2 years more than 200 domains have been added, and now 52% of UniProtKB/Swiss-Prot entries (release 48.1 of September 27, 2005) have a cross-reference to a PROSITE entry. The database is accessible at http://www.expasy.org/prosite/. PMID:16381852

  2. The PROSITE database

    PubMed Central

    Hulo, Nicolas; Bairoch, Amos; Bulliard, Virginie; Cerutti, Lorenzo; De Castro, Edouard; Langendijk-Genevaux, Petra S.; Pagni, Marco; Sigrist, Christian J. A.

    2006-01-01

    The PROSITE database consists of a large collection of biologically meaningful signatures that are described as patterns or profiles. Each signature is linked to a documentation that provides useful biological information on the protein family, domain or functional site identified by the signature. The PROSITE database is now complemented by a series of rules that can give more precise information about specific residues. During the last 2 years, the documentation and the ScanProsite web pages were redesigned to add more functionalities. The latest version of PROSITE (release 19.11 of September 27, 2005) contains 1329 patterns and 552 profile entries. Over the past 2 years more than 200 domains have been added, and now 52% of UniProtKB/Swiss-Prot entries (release 48.1 of September 27, 2005) have a cross-reference to a PROSITE entry. The database is accessible at . PMID:16381852

  3. Medical database security evaluation.

    PubMed

    Pangalos, G J

    1993-01-01

    Users of medical information systems need confidence in the security of the system they are using. They also need a method to evaluate and compare its security capabilities. Every system has its own requirements for maintaining confidentiality, integrity and availability. In order to meet these requirements a number of security functions must be specified covering areas such as access control, auditing, error recovery, etc. Appropriate confidence in these functions is also required. The 'trust' in trusted computer systems rests on their ability to prove that their secure mechanisms work as advertised and cannot be disabled or diverted. The general framework and requirements for medical database security and a number of parameters of the evaluation problem are presented and discussed. The problem of database security evaluation is then discussed, and a number of specific proposals are presented, based on a number of existing medical database security systems. PMID:8072337

  4. Mouse genome database 2016

    PubMed Central

    Bult, Carol J.; Eppig, Janan T.; Blake, Judith A.; Kadin, James A.; Richardson, Joel E.

    2016-01-01

    The Mouse Genome Database (MGD; http://www.informatics.jax.org) is the primary community model organism database for the laboratory mouse and serves as the source for key biological reference data related to mouse genes, gene functions, phenotypes and disease models with a strong emphasis on the relationship of these data to human biology and disease. As the cost of genome-scale sequencing continues to decrease and new technologies for genome editing become widely adopted, the laboratory mouse is more important than ever as a model system for understanding the biological significance of human genetic variation and for advancing the basic research needed to support the emergence of genome-guided precision medicine. Recent enhancements to MGD include new graphical summaries of biological annotations for mouse genes, support for mobile access to the database, tools to support the annotation and analysis of sets of genes, and expanded support for comparative biology through the expansion of homology data. PMID:26578600

  5. The Genopolis Microarray Database

    PubMed Central

    Splendiani, Andrea; Brandizi, Marco; Even, Gael; Beretta, Ottavio; Pavelka, Norman; Pelizzola, Mattia; Mayhaus, Manuel; Foti, Maria; Mauri, Giancarlo; Ricciardi-Castagnoli, Paola

    2007-01-01

    Background Gene expression databases are key resources for microarray data management and analysis and the importance of a proper annotation of their content is well understood. Public repositories as well as microarray database systems that can be implemented by single laboratories exist. However, there is not yet a tool that can easily support a collaborative environment where different users with different rights of access to data can interact to define a common highly coherent content. The scope of the Genopolis database is to provide a resource that allows different groups performing microarray experiments related to a common subject to create a common coherent knowledge base and to analyse it. The Genopolis database has been implemented as a dedicated system for the scientific community studying dendritic and macrophage cells functions and host-parasite interactions. Results The Genopolis Database system allows the community to build an object based MIAME compliant annotation of their experiments and to store images, raw and processed data from the Affymetrix GeneChip® platform. It supports dynamical definition of controlled vocabularies and provides automated and supervised steps to control the coherence of data and annotations. It allows a precise control of the visibility of the database content to different sub groups in the community and facilitates exports of its content to public repositories. It provides an interactive users interface for data analysis: this allows users to visualize data matrices based on functional lists and sample characterization, and to navigate to other data matrices defined by similarity of expression values as well as functional characterizations of genes involved. A collaborative environment is also provided for the definition and sharing of functional annotation by users. Conclusion The Genopolis Database supports a community in building a common coherent knowledge base and analyse it. This fills a gap between a local database and a public repository, where the development of a common coherent annotation is important. In its current implementation, it provides a uniform coherently annotated dataset on dendritic cells and macrophage differentiation. PMID:17430566

  6. Database Management System

    NASA Technical Reports Server (NTRS)

    1990-01-01

    In 1981 Wayne Erickson founded Microrim, Inc, a company originally focused on marketing a microcomputer version of RIM (Relational Information Manager). Dennis Comfort joined the firm and is now vice president, development. The team developed an advanced spinoff from the NASA system they had originally created, a microcomputer database management system known as R:BASE 4000. Microrim added many enhancements and developed a series of R:BASE products for various environments. R:BASE is now the second largest selling line of microcomputer database management software in the world.

  7. DataBase on Demand

    NASA Astrophysics Data System (ADS)

    Gaspar Aparicio, R.; Gomez, D.; Coterillo Coz, I.; Wojcik, D.

    2012-12-01

    At CERN a number of key database applications are running on user-managed MySQL database services. The database on demand project was born out of an idea to provide the CERN user community with an environment to develop and run database services outside of the actual centralised Oracle based database services. The Database on Demand (DBoD) empowers the user to perform certain actions that had been traditionally done by database administrators, DBA's, providing an enterprise platform for database applications. It also allows the CERN user community to run different database engines, e.g. presently open community version of MySQL and single instance Oracle database server. This article describes a technology approach to face this challenge, a service level agreement, the SLA that the project provides, and an evolution of possible scenarios.

  8. A skeletal gene database.

    PubMed

    Ho, N C; Jia, L; Driscoll, C C; Gutter, E M; Francomano, C A

    2000-11-01

    Systematic organization of documented data coupled with ready accessibility is of great value to research. Catalogs and databases are created specifically to meet this purpose. The Skeletal Gene Database evolves as part of the Skeletal Genome Anatomy Project (SGAP), an ongoing multi-institute collaborative effort, to study the functional genome of bone and other skeletal tissues. The primary objective of the Skeletal Gene Database is to create a contemporary list of skeletal-related genes, offering the following information for each gene: gene name, protein name, cellular function, disease(s) caused by mutation of the corresponding gene, chromosomal location, LocusLink number, gene size, exon/intron numbers, messenger RNA (mRNA) coding region size, protein size/molecular weight, Online Mendelian Inheritance in Man (OMIM) number of the gene, UniGene assignment, and PubMed reference. The database includes genes already known and published in the literature as well as novel genes not yet characterized but known to be expressed in skeletal tissue. It will be posted on the web for easy access and swift referencing. The data will be updated in tempo with current and future research, thereby providing an invaluable service to the scientific community interested in obtaining information on bone-related genes. PMID:11092392

  9. NATIONAL NUTRIENTS DATABASE

    EPA Science Inventory

    Resource Purpose:The Nutrient Criteria Program has initiated development of a National relational database application that will be used to store and analyze nutrient data. The ultimate use of these data will be to derive ecoregion- and waterbody-specific numeric nutrient...

  10. The ADAMS database language

    SciTech Connect

    Pfaltz, J.L.; French, J.C.; Grimshaw, A.; Son, Sang H.; Baron, P.; Janet, S.; Kim, A.; Klumpp, C.; Lin, Yi; Lloyd, L.

    1989-02-28

    ADAMS provides a mechanism for applications programs, written in many languages, to define and access common persistent databases. The basic constructs are element, class, set, map, attribute and codomain. From these the user may define new data structures and new data classes belonging to a semantic hierarchy that supports multiple inheritance. 7 refs., 2 figs.

  11. AIDSinfo Drug Database

    MedlinePlus

    ... related drugs for health care providers and patients. Search the Drug Database Help × Search by drug name Performs a search by drug ... common names of the drug. Drug Class: Help × Search by drug class Select a specific drug class ...

  12. Diatomic Spectral Database

    National Institute of Standards and Technology Data Gateway

    SRD 114 Diatomic Spectral Database (Web, free access)   All of the rotational spectral lines observed and reported in the open literature for 121 diatomic molecules have been tabulated. The isotopic molecular species, assigned quantum numbers, observed frequency, estimated measurement uncertainty, and reference are given for each transition reported.

  13. The CEBAF Element Database

    SciTech Connect

    Theodore Larrieu, Christopher Slominski, Michele Joyce

    2011-03-01

    With the inauguration of the CEBAF Element Database (CED) in Fall 2010, Jefferson Lab computer scientists have taken a step toward the eventual goal of a model-driven accelerator. Once fully populated, the database will be the primary repository of information used for everything from generating lattice decks to booting control computers to building controls screens. A requirement influencing the CED design is that it provide access to not only present, but also future and past configurations of the accelerator. To accomplish this, an introspective database schema was designed that allows new elements, types, and properties to be defined on-the-fly with no changes to table structure. Used in conjunction with Oracle Workspace Manager, it allows users to query data from any time in the database history with the same tools used to query the present configuration. Users can also check-out workspaces to use as staging areas for upcoming machine configurations. All Access to the CED is through a well-documented Application Programming Interface (API) that is translated automatically from original C++ source code into native libraries for scripting languages such as perl, php, and TCL making access to the CED easy and ubiquitous.

  14. WHITHER BIOLOGICAL DATABASE RESEARCH?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We consider how the landscape of biological databases may evolve in the future, and what research is needed to realize this evolution. We suggest today's dispersal of diverse resources will only increase as the number and size of those resources, driving the need for semantic interoperability even ...

  15. NATIONAL ASSESSMENT DATABASE (NAD)

    EPA Science Inventory

    Resource Purpose:The National Assessment Database stores State water quality assessments that are reported under Section 305(b) of the Clean Water Act. The data are stored by individual water quality assessments. Threatened, partially and not supporting waters also have da...

  16. GENERAL PERMITS DATABASE

    EPA Science Inventory

    Resource Purpose:This database was used to provide permit writers with a library of examples for writing general permits. It has not been maintained and is outdated and will be removed. Water Permits Division is trying to determine whether or not to recreate this databas...

  17. Databases and data mining

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Over the course of the past decade, the breadth of information that is made available through online resources for plant biology has increased astronomically, as have the interconnectedness among databases, online tools, and methods of data acquisition and analysis. For maize researchers, the numbe...

  18. ENVIRONMENTAL FATE DATABASE (ENVIROFATE)

    EPA Science Inventory

    The Environmental Fate Database contains more than 13,000 records of information on the environmental fate or behavior (i.e., transport and degradation) of approximately 800 chemical released into the environment. Chemicals selected for inclusion are produced in quantities exceed...

  19. "Prostate Cancer Proteomics" Database

    PubMed Central

    Shishkin, S.S.; Kovalyov, L.I.; Kovalyova, M.A.; Lisitskaya, K.V.; Eremina, L.S.; Ivanov, A.V.; Gerasimov, E.V.; Sadykhov, E.G.; Ulasova, N.Y.; Sokolova, O.S.; Toropygin, I.Y.; Popov, V.O.

    2010-01-01

    A database of Prostate Cancer Proteomics has been created by using the results of a proteomic study of human prostate carcinoma and benign hyperplasia tissues, and of some human-cultured cell lines (PCP, http://ef.inbi.ras.ru). PCP consists of 7 interrelated modules, each containing four levels of proteomic and biomedical data on the proteins in corresponding tissues or cells. The first data level, onto which each module is based, is a 2DE proteomic reference map where proteins separated by 2D electrophoresis, and subsequently identified by mass-spectrometry, are marked. The results of proteomic experiments form the second data level. The third level contains protein data from published articles and existing databases. The fourth level is formed with direct Internet links to the information on corresponding proteins in the NCBI and UniProt databases. PCP contains data on 359 proteins in total, including 17 potential biomarkers of prostate cancer, particularly AGR2, annexins, S100 proteins, PRO2675, and PRO2044. The database will be useful in a wide range of applications, including studies of molecular mechanisms of the aetiology and pathogenesis of prostate diseases, finding new diagnostic markers, etc. PMID:22649669

  20. PESTICIDE USE REPORT DATABASE

    EPA Science Inventory

    This dataset summarizes pesticide use in California for year 1990-96 as extracted from the Pesticide Use Report (PUR) by county. The PUR is a comprehensive database of Pesticide Use in the state of California supplied by the DPR (California Department of Pesticide Regulation).

  1. ECOREGION SPATIAL DATABASE

    EPA Science Inventory

    This spatial database contains boundaries and attributes describing Level III ecoregions in EPA Region 8. The ecoregions shown here have been derived from Omernik (1987) and from refinements of Omernik's framework that have been made for other projects. These ongoing or re...

  2. The Radiation Hybrid Database.

    PubMed Central

    Lijnzaad, P; Helgesen, C; Rodriguez-Tomé, P

    1998-01-01

    Since July 1995, the European Bioinformatics Institute (EBI) has maintained RHdb (http://www.ebi.ac.uk/RHdb/RHdb.html ), a public database for radiation hybrid data. Radiation hybrid mapping is an important technique for determining high resolution maps. Recently, CORBA access has been added to Rhdb. The EBI is an Outstation of the European Molecular Biology Laboratory (EMBL). PMID:9399810

  3. Redis database administration tool

    Energy Science and Technology Software Center (ESTSC)

    2013-02-13

    MyRedis is a product of the Lorenz subproject under the ASC Scirntific Data Management effort. MyRedis is a web based utility designed to allow easy administration of instances of Redis databases. It can be usedd to view and manipulate data as well as run commands directly against a variety of different Redis hosts.

  4. WETLANDS TREATMENT DATABASE

    EPA Science Inventory

    The U.S. EPA sponsored a project to collect and catalog information from wastewater treatment wetlands into a computer database. PA has also written a user friendly, stand-alone, menu-driven computer program to allow anyone with DOS 3.3 or higher to access the information in the ...

  5. Weathering Database Technology

    ERIC Educational Resources Information Center

    Snyder, Robert

    2005-01-01

    Collecting weather data is a traditional part of a meteorology unit at the middle level. However, making connections between the data and weather conditions can be a challenge. One way to make these connections clearer is to enter the data into a database. This allows students to quickly compare different fields of data and recognize which…

  6. NATIONAL CONTAMINANT OCCURRENCE DATABASE

    EPA Science Inventory

    Resource Purpose:Under the 1996 Safe Drinking Water Act Amendments, EPA is to assemble a National Drinking Water Occurrence Database (NCOD) by August 1999. The NCOD is a collection of data of documented quality on unregulated and regulated chemical, radiological, microbia...

  7. Triatomic Spectral Database

    National Institute of Standards and Technology Data Gateway

    SRD 117 Triatomic Spectral Database (Web, free access)   All of the rotational spectral lines observed and reported in the open literature for 55 triatomic molecules have been tabulated. The isotopic molecular species, assigned quantum numbers, observed frequency, estimated measurement uncertainty and reference are given for each transition reported.

  8. High Performance Buildings Database

    DOE Data Explorer

    The High Performance Buildings Database is a shared resource for the building industry, a unique central repository of in-depth information and data on high-performance, green building projects across the United States and abroad. The database includes information on the energy use, environmental performance, design process, finances, and other aspects of each project. Members of the design and construction teams are listed, as are sources for additional information. In total, up to twelve screens of detailed information are provided for each project profile. Projects range in size from small single-family homes or tenant fit-outs within buildings to large commercial and institutional buildings and even entire campuses. The database is a data repository as well. A series of Web-based data-entry templates allows anyone to enter information about a building project into the database. Once a project has been submitted, each of the partner organizations can review the entry and choose whether or not to publish that particular project on its own Web site.

  9. Relational database telemanagement.

    PubMed

    Swinney, A R

    1988-05-01

    Dallas-based Baylor Health Care System recognized the need for a way to control and track responses to their marketing programs. To meet the demands of data management and analysis, and build a useful database of current customers and future prospects, the marketing department developed a system to capture, store and manage these responses. PMID:10286759

  10. Weathering Database Technology

    ERIC Educational Resources Information Center

    Snyder, Robert

    2005-01-01

    Collecting weather data is a traditional part of a meteorology unit at the middle level. However, making connections between the data and weather conditions can be a challenge. One way to make these connections clearer is to enter the data into a database. This allows students to quickly compare different fields of data and recognize which

  11. LQTS gene LOVD database.

    PubMed

    Zhang, Tao; Moss, Arthur; Cong, Peikuan; Pan, Min; Chang, Bingxi; Zheng, Liangrong; Fang, Quan; Zareba, Wojciech; Robinson, Jennifer; Lin, Changsong; Li, Zhongxiang; Wei, Junfang; Zeng, Qiang; Qi, Ming

    2010-11-01

    The Long QT Syndrome (LQTS) is a group of genetically heterogeneous disorders that predisposes young individuals to ventricular arrhythmias and sudden death. LQTS is mainly caused by mutations in genes encoding subunits of cardiac ion channels (KCNQ1, KCNH2,SCN5A, KCNE1, and KCNE2). Many other genes involved in LQTS have been described recently(KCNJ2, AKAP9, ANK2, CACNA1C, SCNA4B, SNTA1, and CAV3). We created an online database(http://www.genomed.org/LOVD/introduction.html) that provides information on variants in LQTS-associated genes. As of February 2010, the database contains 1738 unique variants in 12 genes. A total of 950 variants are considered pathogenic, 265 are possible pathogenic, 131 are unknown/unclassified, and 292 have no known pathogenicity. In addition to these mutations collected from published literature, we also submitted information on gene variants, including one possible novel pathogenic mutation in the KCNH2 splice site found in ten Chinese families with documented arrhythmias. The remote user is able to search the data and is encouraged to submit new mutations into the database. The LQTS database will become a powerful tool for both researchers and clinicians. PMID:20809527

  12. LQTS Gene LOVD Database

    PubMed Central

    Zhang, Tao; Moss, Arthur; Cong, Peikuan; Pan, Min; Chang, Bingxi; Zheng, Liangrong; Fang, Quan; Zareba, Wojciech; Robinson, Jennifer; Lin, Changsong; Li, Zhongxiang; Wei, Junfang; Zeng, Qiang; Qi, Ming

    2010-01-01

    The Long QT Syndrome (LQTS) is a group of genetically heterogeneous disorders that predisposes young individuals to ventricular arrhythmias and sudden death. LQTS is mainly caused by mutations in genes encoding subunits of cardiac ion channels (KCNQ1, KCNH2, SCN5A, KCNE1, and KCNE2). Many other genes involved in LQTS have been described recently (KCNJ2, AKAP9, ANK2, CACNA1C, SCNA4B, SNTA1, and CAV3). We created an online database (http://www.genomed.org/LOVD/introduction.html) that provides information on variants in LQTS-associated genes. As of February 2010, the database contains 1738 unique variants in 12 genes. A total of 950 variants are considered pathogenic, 265 are possible pathogenic, 131 are unknown/unclassified, and 292 have no known pathogenicity. In addition to these mutations collected from published literature, we also submitted information on gene variants, including one possible novel pathogenic mutation in the KCNH2 splice site found in ten Chinese families with documented arrhythmias. The remote user is able to search the data and is encouraged to submit new mutations into the database. The LQTS database will become a powerful tool for both researchers and clinicians. © 2010 Wiley-Liss, Inc. PMID:20809527

  13. LHCb distributed conditions database

    NASA Astrophysics Data System (ADS)

    Clemencic, M.

    2008-07-01

    The LHCb Conditions Database project provides the necessary tools to handle non-event time-varying data. The main users of conditions are reconstruction and analysis processes, which are running on the Grid. To allow efficient access to the data, we need to use a synchronized replica of the content of the database located at the same site as the event data file, i.e. the LHCb Tier1. The replica to be accessed is selected from information stored on LFC (LCG File Catalog) and managed with the interface provided by the LCG developed library CORAL. The plan to limit the submission of jobs to those sites where the required conditions are available will also be presented. LHCb applications are using the Conditions Database framework on a production basis since March 2007. We have been able to collect statistics on the performance and effectiveness of both the LCG library COOL (the library providing conditions handling functionalities) and the distribution framework itself. Stress tests on the CNAF hosted replica of the Conditions Database have been performed and the results will be summarized here.

  14. The Indra Simulation Database

    NASA Astrophysics Data System (ADS)

    Falck, Bridget; Budavari, T.; Cole, S.; Crankshaw, D.; Dobos, L.; Lemson, G.; Neyrinck, M.; Szalay, A.; Wang, J.

    2011-05-01

    We present the Indra suite of cosmological N-body simulations and the design of its companion database. Indra consists of 512 different instances of a 1 Gpc/h-sided box, each with 100 million dark matter particles and the same input cosmology, enabling a characterization of very large-scale modes of the matter power spectrum with galaxy-scale mass resolution and an excellent handle on cosmic variance. Each simulation outputs 64 snapshots, giving over 100 TB of data for the full set of simulations, all of which will be loaded into a SQL database. We discuss the database design for the particle data, consisting of the positions and velocities of each particle; the FOF halos, with links to the particle data so that halo properties can be calculated within the database; and the density field on a power-of-two grid, which can be easily linked to each particle's Peano-Hilbert index. Initial performance tests and example queries will be given. The authors are grateful for support from the Gordon and Betty Moore and the W.M. Keck Foundations.

  15. Hydrocarbon Spectral Database

    National Institute of Standards and Technology Data Gateway

    SRD 115 Hydrocarbon Spectral Database (Web, free access)   All of the rotational spectral lines observed and reported in the open literature for 91 hydrocarbon molecules have been tabulated. The isotopic molecular species, assigned quantum numbers, observed frequency, estimated measurement uncertainty and reference are given for each transition reported.

  16. The AMMA database

    NASA Astrophysics Data System (ADS)

    Boichard, Jean-Luc; Brissebrat, Guillaume; Cloche, Sophie; Eymard, Laurence; Fleury, Laurence; Mastrorillo, Laurence; Moulaye, Oumarou; Ramage, Karim

    2010-05-01

    The AMMA project includes aircraft, ground-based and ocean measurements, an intensive use of satellite data and diverse modelling studies. Therefore, the AMMA database aims at storing a great amount and a large variety of data, and at providing the data as rapidly and safely as possible to the AMMA research community. In order to stimulate the exchange of information and collaboration between researchers from different disciplines or using different tools, the database provides a detailed description of the products and uses standardized formats. The AMMA database contains: - AMMA field campaigns datasets; - historical data in West Africa from 1850 (operational networks and previous scientific programs); - satellite products from past and future satellites, (re-)mapped on a regular latitude/longitude grid and stored in NetCDF format (CF Convention); - model outputs from atmosphere or ocean operational (re-)analysis and forecasts, and from research simulations. The outputs are processed as the satellite products are. Before accessing the data, any user has to sign the AMMA data and publication policy. This chart only covers the use of data in the framework of scientific objectives and categorically excludes the redistribution of data to third parties and the usage for commercial applications. Some collaboration between data producers and users, and the mention of the AMMA project in any publication is also required. The AMMA database and the associated on-line tools have been fully developed and are managed by two teams in France (IPSL Database Centre, Paris and OMP, Toulouse). Users can access data of both data centres using an unique web portal. This website is composed of different modules : - Registration: forms to register, read and sign the data use chart when an user visits for the first time - Data access interface: friendly tool allowing to build a data extraction request by selecting various criteria like location, time, parameters... The request can concern local, satellite and model data. - Documentation: catalogue of all the available data and their metadata. These tools have been developed using standard and free languages and softwares: - Linux system with an Apache web server and a Tomcat application server; - J2EE tools : JSF and Struts frameworks, hibernate; - relational database management systems: PostgreSQL and MySQL; - OpenLDAP directory. In order to facilitate the access to the data by African scientists, the complete system has been mirrored at AGHRYMET Regional Centre in Niamey and is operational there since January 2009. Users can now access metadata and request data through one or the other of two equivalent portals: http://database.amma-international.org or http://amma.agrhymet.ne/amma-data.

  17. JDD, Inc. Database

    NASA Technical Reports Server (NTRS)

    Miller, David A., Jr.

    2004-01-01

    JDD Inc, is a maintenance and custodial contracting company whose mission is to provide their clients in the private and government sectors "quality construction, construction management and cleaning services in the most efficient and cost effective manners, (JDD, Inc. Mission Statement)." This company provides facilities support for Fort Riley in Fo,rt Riley, Kansas and the NASA John H. Glenn Research Center at Lewis Field here in Cleveland, Ohio. JDD, Inc. is owned and operated by James Vaughn, who started as painter at NASA Glenn and has been working here for the past seventeen years. This summer I worked under Devan Anderson, who is the safety manager for JDD Inc. in the Logistics and Technical Information Division at Glenn Research Center The LTID provides all transportation, secretarial, security needs and contract management of these various services for the center. As a safety manager, my mentor provides Occupational Health and Safety Occupation (OSHA) compliance to all JDD, Inc. employees and handles all other issues (Environmental Protection Agency issues, workers compensation, safety and health training) involving to job safety. My summer assignment was not as considered "groundbreaking research" like many other summer interns have done in the past, but it is just as important and beneficial to JDD, Inc. I initially created a database using a Microsoft Excel program to classify and categorize data pertaining to numerous safety training certification courses instructed by our safety manager during the course of the fiscal year. This early portion of the database consisted of only data (training field index, employees who were present at these training courses and who was absent) from the training certification courses. Once I completed this phase of the database, I decided to expand the database and add as many dimensions to it as possible. Throughout the last seven weeks, I have been compiling more data from day to day operations and been adding the information to the database. It now consists of seven different categories of data (carpet cleaning, forms, NASA Event Schedules, training certifications, wall and vent cleaning, work schedules, and miscellaneous) . I also did some field inspecting with the supervisors around the site and was present at all of the training certification courses that have been scheduled since June 2004. My future outlook for the JDD, Inc. database is to have all of company s information from future contract proposals, weekly inventory, to employee timesheets all in this same database.

  18. Tautomerism in large databases

    PubMed Central

    Sitzmann, Markus; Ihlenfeldt, Wolf-Dietrich

    2010-01-01

    We have used the Chemical Structure DataBase (CSDB) of the NCI CADD Group, an aggregated collection of over 150 small-molecule databases totaling 103.5 million structure records, to conduct tautomerism analyses on one of the largest currently existing sets of real (i.e. not computer-generated) compounds. This analysis was carried out using calculable chemical structure identifiers developed by the NCI CADD Group, based on hash codes available in the chemoinformatics toolkit CACTVS and a newly developed scoring scheme to define a canonical tautomer for any encountered structure. CACTVSs tautomerism definition, a set of 21 transform rules expressed in SMIRKS line notation, was used, which takes a comprehensive stance as to the possible types of tautomeric interconversion included. Tautomerism was found to be possible for more than 2/3 of the unique structures in the CSDB. A total of 680 million tautomers were calculated from, and including, the original structure records. Tautomerism overlap within the same individual database (i.e. at least one other entry was present that was really only a different tautomeric representation of the same compound) was found at an average rate of 0.3% of the original structure records, with values as high as nearly 2% for some of the databases in CSDB. Projected onto the set of unique structures (by FICuS identifier), this still occurred in about 1.5% of the cases. Tautomeric overlap across all constituent databases in CSDB was found for nearly 10% of the records in the collection. PMID:20512400

  19. JICST Factual DatabaseJICST Chemical Substance Safety Regulation Database

    NASA Astrophysics Data System (ADS)

    Abe, Atsushi; Sohma, Tohru

    JICST Chemical Substance Safety Regulation Database is based on the Database of Safety Laws for Chemical Compounds constructed by Japan Chemical Industry Ecology-Toxicology & Information Center (JETOC) sponsored by the Sience and Technology Agency in 1987. JICST has modified JETOC database system, added data and started the online service through JOlS-F (JICST Online Information Service-Factual database) in January 1990. JICST database comprises eighty-three laws and fourteen hundred compounds. The authors outline the database, data items, files and search commands. An example of online session is presented.

  20. Open geochemical database

    NASA Astrophysics Data System (ADS)

    Zhilin, Denis; Ilyin, Vladimir; Bashev, Anton

    2010-05-01

    We regard "geochemical data" as data on chemical parameters of the environment, linked with the geographical position of the corresponding point. Boosting development of global positioning system (GPS) and measuring instruments allows fast collecting of huge amounts of geochemical data. Presently they are published in scientific journals in text format, that hampers searching for information about particular places and meta-analysis of the data, collected by different researchers. Part of the information is never published. To make the data available and easy to find, it seems reasonable to elaborate an open database of geochemical information, accessible via Internet. It also seems reasonable to link the data with maps or space images, for example, from GoogleEarth service. For this purpose an open geochemical database is being elaborating (http://maps.sch192.ru). Any user after registration can upload geochemical data (position, type of parameter and value of the parameter) and edit them. Every user (including unregistered) can (a) extract the values of parameters, fulfilling desired conditions and (b) see the points, linked to GoogleEarth space image, colored according to a value of selected parameter. Then he can treat extracted values any way he likes. There are the following data types in the database: authors, points, seasons and parameters. Author is a person, who publishes the data. Every author can declare his own profile. A point is characterized by its geographical position and type of the object (i.e. river, lake etc). Value of parameters are linked to a point, an author and a season, when they were obtained. A user can choose a parameter to place on GoogleEarth space image and a scale to color the points on the image according to the value of a parameter. Currently (December, 2009) the database is under construction, but several functions (uploading data on pH and electrical conductivity and placing colored points onto GoogleEarth space image) are available yet. We hope that open database will help exchanging geochemical information and call everybody for sharing the geochemical data. We also call for feedback on the structure, interface and operation of the database.

  1. The EMBL Nucleotide Sequence Database.

    PubMed Central

    Stoesser, G; Sterk, P; Tuli, M A; Stoehr, P J; Cameron, G N

    1997-01-01

    The EMBL Nucleotide Sequence Database is a comprehensive database of DNA and RNA sequences directly submitted from researchers and genome sequencing groups and collected from the scientific literature and patent applications. In collaboration with DDBJ and GenBank the database is produced, maintained and distributed at the European Bioinformatics Institute (EBI) and constitutes Europe's primary nucleotide sequence resource. Database releases are produced quarterly and are distributed on CD-ROM. EBI's network services allow access to the most up-to-date data collection via Internet and World Wide Web interface, providing database searching and sequence similarity facilities plus access to a large number of additional databases. PMID:9016493

  2. NATIVE HEALTH DATABASES: NATIVE HEALTH RESEARCH DATABASE (NHRD)

    EPA Science Inventory

    The Native Health Databases contain bibliographic information and abstracts of health-related articles, reports, surveys, and other resource documents pertaining to the health and health care of American Indians, Alaska Natives, and Canadian First Nations. The databases provide i...

  3. NATIVE HEALTH DATABASES: NATIVE HEALTH HISTORY DATABASE (NHHD)

    EPA Science Inventory

    The Native Health Databases contain bibliographic information and abstracts of health-related articles, reports, surveys, and other resource documents pertaining to the health and health care of American Indians, Alaska Natives, and Canadian First Nations. The databases provide i...

  4. FINE PARTICLE EMISSIONS INFORMATION SYSTEM: SUMMARY REPORT (SUMMER 1976)

    EPA Science Inventory

    The report summarizes the initial loading of data into the Fine Particle Emissions Information System (FPEIS), a computerized database on primary fine particle emissions to the atmosphere from stationary sources, designed to assist engineers and scientists engaged in fine particl...

  5. INNOVATIVE METHODS FOR EMISSION INVENTORY DEVELOPMENT AND EVALUATION: WORKSHOP SYNTHESIS

    EPA Science Inventory

    Emission inventories are key databases for evaluating, managing, and regulating air pollutants. Refinements and innovations in instruments that measure air pollutants, models that calculate emissions, and techniques for data management and uncertainty assessment are critical to ...

  6. Molecular interaction databases.

    PubMed

    Orchard, Sandra

    2012-05-01

    Molecular interaction databases are playing an ever more important role in our understanding of the biology of the cell. An increasing number of resources exist to provide these data and many of these have adopted the controlled vocabularies and agreed-upon standardised data formats produced by the Molecular Interaction workgroup of the Human Proteome Organization Proteomics Standards Initiative (HUPO PSI-MI). Use of these standards allows each resource to establish PSI Common QUery InterfaCe (PSICQUIC) service, making data from multiple resources available to the user in response to a single query. This cooperation between databases has been taken a stage further, with the establishment of the International Molecular Exchange (IMEx) consortium which aims to maximise the curation power of numerous data resources, and provide the user with a non-redundant, consistently annotated set of interaction data. PMID:22611057

  7. ARTI Refrigerant Database

    SciTech Connect

    Calm, J.M.

    1992-11-09

    The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air- conditioning and refrigeration equipment. The database identifies sources of specific information on R-32, R-123, R-124, R-125, R-134, R-134a, R-141b, R-142b, R-143a, R-152a, R-245ca, R-290 (propane), R- 717 (ammonia), ethers, and others as well as azeotropic and zeotropic and zeotropic blends of these fluids. It addresses lubricants including alkylbenzene, polyalkylene glycol, ester, and other synthetics as well as mineral oils. It also references documents on compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. A computerized version is available that includes retrieval software.

  8. Facial plastic surgery database.

    PubMed

    Mendelsohn, M; Conrad, K

    1994-02-01

    Every facial plastic surgeon accumulates a vast library of professional slides and photographs that document his work. Manual cataloguing of the clinical and operative documentation is time consuming and provides limited analysis capabilities. The facial plastic surgery database is a state-of-the-art computer programme that allows the surgeon to sort and locate slides and photographs. Designed for the computer novice, it utilises a simple coding system to permit rapid data input. The codes can be tailored to allow for new procedures or alternative practice styles. There are sophisticated searching routines to quickly find slides and photographs based on any combination of patients and operative criteria. The database also includes an online colour atlas and workspace for recording of presentations. There are automated routines to analyse patients' clinical features, operative trends, and surgical results. Ultimately, examination of this data can be used to facilitate peer review, research, and self-education. PMID:8170012

  9. Observational Mishaps - a Database

    NASA Astrophysics Data System (ADS)

    von Braun, K.; Chiboucas, K.; Hurley-Keller, D.

    1999-05-01

    We present a World-Wide-Web-accessible database of astronomical images which suffer from a variety of observational problems. These problems range from common phenomena, such as dust grains on filters and/or dewar window, to more exotic cases like, for instance, deflated support airbags underneath the primary mirror. The purpose of this database is to enable astronomers at telescopes to save telescope time by discovering the nature of the trouble they might be experiencing with the help of this online catalog. Every observational mishap contained in this collection is presented in the form of a GIF image, a brief explanation of the problem, and, to the extent possible, a suggestion of what might be done to solve the problem and improve the image quality.

  10. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1999-01-01

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilities access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

  11. Real Time Baseball Database

    NASA Astrophysics Data System (ADS)

    Fukue, Yasuhiro

    The author describes the system outline, features and operations of "Nikkan Sports Realtime Basaball Database" which was developed and operated by Nikkan Sports Shimbun, K. K. The system enables to input numerical data of professional baseball games as they proceed simultaneously, and execute data updating at realtime, just-in-time. Other than serving as supporting tool for prepareing newspapers it is also available for broadcasting media, general users through NTT dial Q2 and others.

  12. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1996-07-01

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

  13. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1996-11-15

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

  14. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1996-01-15

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. it consolidates and facilitates.access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern.

  15. A database of circumstellar OH masers

    NASA Astrophysics Data System (ADS)

    Engels, D.; Bunzel, F.

    2015-10-01

    We present a new database of circumstellar OH masers at 1612, 1665, and 1667 MHz in the Milky Way galaxy. The database (version 2.4) contains 13 655 observations and 2341 different stars detected in at least one transition. Detections at 1612 MHz are considered to be complete until the end of 2014 as long as they were published in refereed papers. Detections of the main lines (1665 and 1667 MHz) and non-detections in all transitions are included only if published after 1983. The database contains flux densities and velocities of the two strongest maser peaks, the expansion velocity of the shell, and the radial velocity of the star. Links are provided for about 100 stars (<5% of all stars with OH masers) to interferometric observations and monitoring programs of the maser emission published since their beginnings in the 1970s. Access to the database is possible over the Web (http://www.hs.uni-hamburg.de/maserdb), allowing cone searches for individual sources and lists of sources. A general search is possible in selected regions of the sky and by defining ranges of flux densities and/or velocities. Alternative ways to access the data are via the German Virtual Observatory and the CDS. The data are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/582/A68

  16. Curcumin Resource Database

    PubMed Central

    Kumar, Anil; Chetia, Hasnahana; Sharma, Swagata; Kabiraj, Debajyoti; Talukdar, Narayan Chandra; Bora, Utpal

    2015-01-01

    Curcumin is one of the most intensively studied diarylheptanoid, Curcuma longa being its principal producer. This apart, a class of promising curcumin analogs has been generated in laboratories, aptly named as Curcuminoids which are showing huge potential in the fields of medicine, food technology, etc. The lack of a universal source of data on curcumin as well as curcuminoids has been felt by the curcumin research community for long. Hence, in an attempt to address this stumbling block, we have developed Curcumin Resource Database (CRDB) that aims to perform as a gateway-cum-repository to access all relevant data and related information on curcumin and its analogs. Currently, this database encompasses 1186 curcumin analogs, 195 molecular targets, 9075 peer reviewed publications, 489 patents and 176 varieties of C. longa obtained by extensive data mining and careful curation from numerous sources. Each data entry is identified by a unique CRDB ID (identifier). Furnished with a user-friendly web interface and in-built search engine, CRDB provides well-curated and cross-referenced information that are hyperlinked with external sources. CRDB is expected to be highly useful to the researchers working on structure as well as ligand-based molecular design of curcumin analogs. Database URL: http://www.crdb.in PMID:26220923

  17. ARTI Refrigerant Database

    SciTech Connect

    Cain, J.M. , Great Falls, VA )

    1993-04-30

    The Refrigerant Database consolidates and facilitates access to information to assist industry in developing equipment using alternative refrigerants. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included. The database identifies sources of specific information on R-32, R-123, R-124, R-125, R-134, R-134a, R-141b, R-142b, R-143a, R-152a, R-245ca, R-290 (propane), R-717 (ammonia), ethers, and others as well as azeotropic and zeotropic blends of these fluids. It addresses lubricants including alkylbenzene, polyalkylene glycol, ester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents to accelerate availability of the information and will be completed or replaced in future updates.

  18. The Cambridge Structural Database.

    PubMed

    Groom, Colin R; Bruno, Ian J; Lightfoot, Matthew P; Ward, Suzanna C

    2016-04-01

    The Cambridge Structural Database (CSD) contains a complete record of all published organic and metal-organic small-molecule crystal structures. The database has been in operation for over 50 years and continues to be the primary means of sharing structural chemistry data and knowledge across disciplines. As well as structures that are made public to support scientific articles, it includes many structures published directly as CSD Communications. All structures are processed both computationally and by expert structural chemistry editors prior to entering the database. A key component of this processing is the reliable association of the chemical identity of the structure studied with the experimental data. This important step helps ensure that data is widely discoverable and readily reusable. Content is further enriched through selective inclusion of additional experimental data. Entries are available to anyone through free CSD community web services. Linking services developed and maintained by the CCDC, combined with the use of standard identifiers, facilitate discovery from other resources. Data can also be accessed through CCDC and third party software applications and through an application programming interface. PMID:27048719

  19. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1998-08-01

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufactures and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on many refrigerants including propane, ammonia, water, carbon dioxide, propylene, ethers, and others as well as azeotropic and zeotropic blends of these fluids. It addresses lubricants including alkylbenzene, polyalkylene glycol, polyolester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents. They are included to accelerate availability of the information and will be completed or replaced in future updates.

  20. The Cambridge Structural Database

    PubMed Central

    Groom, Colin R.; Bruno, Ian J.; Lightfoot, Matthew P.; Ward, Suzanna C.

    2016-01-01

    The Cambridge Structural Database (CSD) contains a complete record of all published organic and metal–organic small-molecule crystal structures. The database has been in operation for over 50 years and continues to be the primary means of sharing structural chemistry data and knowledge across disciplines. As well as structures that are made public to support scientific articles, it includes many structures published directly as CSD Communications. All structures are processed both computationally and by expert structural chemistry editors prior to entering the database. A key component of this processing is the reliable association of the chemical identity of the structure studied with the experimental data. This important step helps ensure that data is widely discoverable and readily reusable. Content is further enriched through selective inclusion of additional experimental data. Entries are available to anyone through free CSD community web services. Linking services developed and maintained by the CCDC, combined with the use of standard identifiers, facilitate discovery from other resources. Data can also be accessed through CCDC and third party software applications and through an application programming interface. PMID:27048719

  1. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1996-04-15

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alternative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on refrigerants. It addresses lubricants including alkylbenzene, polyalkylene glycol, polyolester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents. They are included to accelerate availability of the information and will be completed or replaced in future updates. Citations in this report are divided into the following topics: thermophysical properties; materials compatibility; lubricants and tribology; application data; safety; test and analysis methods; impacts; regulatory actions; substitute refrigerants; identification; absorption and adsorption; research programs; and miscellaneous documents. Information is also presented on ordering instructions for the computerized version.

  2. State Analysis Database Tool

    NASA Technical Reports Server (NTRS)

    Rasmussen, Robert; Bennett, Matthew

    2006-01-01

    The State Analysis Database Tool software establishes a productive environment for collaboration among software and system engineers engaged in the development of complex interacting systems. The tool embodies State Analysis, a model-based system engineering methodology founded on a state-based control architecture (see figure). A state represents a momentary condition of an evolving system, and a model may describe how a state evolves and is affected by other states. The State Analysis methodology is a process for capturing system and software requirements in the form of explicit models and states, and defining goal-based operational plans consistent with the models. Requirements, models, and operational concerns have traditionally been documented in a variety of system engineering artifacts that address different aspects of a mission s lifecycle. In State Analysis, requirements, models, and operations information are State Analysis artifacts that are consistent and stored in a State Analysis Database. The tool includes a back-end database, a multi-platform front-end client, and Web-based administrative functions. The tool is structured to prompt an engineer to follow the State Analysis methodology, to encourage state discovery and model description, and to make software requirements and operations plans consistent with model descriptions.

  3. ARTI refrigerant database

    SciTech Connect

    Calm, J.M.

    1997-02-01

    The Refrigerant Database is an information system on alternative refrigerants, associated lubricants, and their use in air conditioning and refrigeration. It consolidates and facilitates access to property, compatibility, environmental, safety, application and other information. It provides corresponding information on older refrigerants, to assist manufacturers and those using alterative refrigerants, to make comparisons and determine differences. The underlying purpose is to accelerate phase out of chemical compounds of environmental concern. The database provides bibliographic citations and abstracts for publications that may be useful in research and design of air-conditioning and refrigeration equipment. The complete documents are not included, though some may be added at a later date. The database identifies sources of specific information on various refrigerants. It addresses lubricants including alkylbenzene, polyalkylene glycol, polyolester, and other synthetics as well as mineral oils. It also references documents addressing compatibility of refrigerants and lubricants with metals, plastics, elastomers, motor insulation, and other materials used in refrigerant circuits. Incomplete citations or abstracts are provided for some documents. They are included to accelerate availability of the information and will be completed or replaced in future updates.

  4. Generalized Database Management System Support for Numeric Database Environments.

    ERIC Educational Resources Information Center

    Dominick, Wayne D.; Weathers, Peggy G.

    1982-01-01

    This overview of potential for utilizing database management systems (DBMS) within numeric database environments highlights: (1) major features, functions, and characteristics of DBMS; (2) applicability to numeric database environment needs and user needs; (3) current applications of DBMS technology; and (4) research-oriented and

  5. Generalized Database Management System Support for Numeric Database Environments.

    ERIC Educational Resources Information Center

    Dominick, Wayne D.; Weathers, Peggy G.

    1982-01-01

    This overview of potential for utilizing database management systems (DBMS) within numeric database environments highlights: (1) major features, functions, and characteristics of DBMS; (2) applicability to numeric database environment needs and user needs; (3) current applications of DBMS technology; and (4) research-oriented and…

  6. ThermoData Engine Database

    National Institute of Standards and Technology Data Gateway

    SRD 103 NIST ThermoData Engine Database (PC database for purchase)   ThermoData Engine is the first product fully implementing all major principles of the concept of dynamic data evaluation formulated at NIST/TRC.

  7. A Case for Database Filesystems

    SciTech Connect

    Adams, P A; Hax, J C

    2009-05-13

    Data intensive science is offering new challenges and opportunities for Information Technology and traditional relational databases in particular. Database filesystems offer the potential to store Level Zero data and analyze Level 1 and Level 3 data within the same database system [2]. Scientific data is typically composed of both unstructured files and scalar data. Oracle SecureFiles is a new database filesystem feature in Oracle Database 11g that is specifically engineered to deliver high performance and scalability for storing unstructured or file data inside the Oracle database. SecureFiles presents the best of both the filesystem and the database worlds for unstructured content. Data stored inside SecureFiles can be queried or written at performance levels comparable to that of traditional filesystems while retaining the advantages of the Oracle database.

  8. High Temperature Superconducting Materials Database

    National Institute of Standards and Technology Data Gateway

    SRD 149 NIST High Temperature Superconducting Materials Database (Web, free access)   The NIST High Temperature Superconducting Materials Database (WebHTS) provides evaluated thermal, mechanical, and superconducting property data for oxides and other nonconventional superconductors.

  9. NEUSE RIVER WATER QUALITY DATABASE

    EPA Science Inventory

    The Neuse River water quality database is a Microsoft Access application that includes multiple data tables and some associated queries. The database was developed by Prof. Jim Bowen's research group.

  10. SmallSat Database

    NASA Technical Reports Server (NTRS)

    Petropulos, Dolores; Bittner, David; Murawski, Robert; Golden, Bert

    2015-01-01

    The SmallSat has an unrealized potential in both the private industry and in the federal government. Currently over 70 companies, 50 universities and 17 governmental agencies are involved in SmallSat research and development. In 1994, the U.S. Army Missile and Defense mapped the moon using smallSat imagery. Since then Smart Phones have introduced this imagery to the people of the world as diverse industries watched this trend. The deployment cost of smallSats is also greatly reduced compared to traditional satellites due to the fact that multiple units can be deployed in a single mission. Imaging payloads have become more sophisticated, smaller and lighter. In addition, the growth of small technology obtained from private industries has led to the more widespread use of smallSats. This includes greater revisit rates in imagery, significantly lower costs, the ability to update technology more frequently and the ability to decrease vulnerability of enemy attacks. The popularity of smallSats show a changing mentality in this fast paced world of tomorrow. What impact has this created on the NASA communication networks now and in future years? In this project, we are developing the SmallSat Relational Database which can support a simulation of smallSats within the NASA SCaN Compatability Environment for Networks and Integrated Communications (SCENIC) Modeling and Simulation Lab. The NASA Space Communications and Networks (SCaN) Program can use this modeling to project required network support needs in the next 10 to 15 years. The SmallSat Rational Database could model smallSats just as the other SCaN databases model the more traditional larger satellites, with a few exceptions. One being that the smallSat Database is designed to be built-to-order. The SmallSat database holds various hardware configurations that can be used to model a smallSat. It will require significant effort to develop as the research material can only be populated by hand to obtain the unique data required. When completed it will interface with the SCENIC environment to allow modeling of smallSats. The SmallSat Relational Database can also be integrated with the SCENIC Simulation modeling system that is currently in development. The SmallSat Relational Database simulation will be of great significance in assisting the NASA SCaN group to understand the impact the smallSats have made which have populated the lower orbit around our mother earth. What I have created and worked on this summer session 2015, is the basis for a tool that will be of value to the NASA SCaN SCENIC Simulation Environment for years to come.

  11. Hydrogen Leak Detection Sensor Database

    NASA Technical Reports Server (NTRS)

    Baker, Barton D.

    2010-01-01

    This slide presentation reviews the characteristics of the Hydrogen Sensor database. The database is the result of NASA's continuing interest in and improvement of its ability to detect and assess gas leaks in space applications. The database specifics and a snapshot of an entry in the database are reviewed. Attempts were made to determine the applicability of each of the 65 sensors for ground and/or vehicle use.

  12. Scientific and Technical Document Database

    National Institute of Standards and Technology Data Gateway

    NIST Scientific and Technical Document Database (PC database for purchase)   The images in NIST Special Database 20 contain a very rich set of graphic elements from scientific and technical documents, such as graphs, tables, equations, two column text, maps, pictures, footnotes, annotations, and arrays of such elements.

  13. Microbial Properties Database Editor Tutorial

    EPA Science Inventory

    A Microbial Properties Database Editor (MPDBE) has been developed to help consolidate microbial-relevant data to populate a microbial database and support a database editor by which an authorized user can modify physico-microbial properties related to microbial indicators and pat...

  14. Deforestation fire carbon emissions for the last millennium simulated with the global vegetation model JSBACH

    NASA Astrophysics Data System (ADS)

    Engels, Jessica; Kloster, Silvia; Wilkenskjeld, Stiig

    2013-04-01

    Humankind has fundamentally modified the Earth's terrestrial surface to secure food and other resources by conversion of natural ecosystems to managed areas. Until today, these anthropogenic changes in land cover have resulted in an extent of conversion from natural land cover by human activities to managed areas between one-third and one-half of the total Earth's land cover (Vitousek (1997)). Large parts of this conversion take place in the form of deforestation fires, which release atmospheric trace gases and aerosols into the atmosphere. These deforestation fires are climate dependent and follow a strong seasonal cycle, which is important for atmospheric chemistry. In the present study, the offline version of the JSBACH carbon pool model of the Max Planck Institute for Meteorology (MPI-M) is used to simulate climate dependent deforestation fire carbon emissions over the last millennium (800-2010). For this, the standard carbon allocation scheme is extended by four additional anthropogenic carbon pools. These pools separate the carbon amount released due to anthropogenic land cover change from the carbon amount released due to natural processes to the atmosphere. The climate dependent deforestation fire emissions are simulated in the model by a linear dependency on the soil moisture. This new carbon allocation scheme results in land cover change carbon emissions, which accumulate between 800 and 2010 to 239.8 PgC. Thereby, the climate dependent deforestation fire carbon emissions accumulate over the last millennium to 182.6 PgC yr-1 in the year 2010, which accounts for 76% of the total land cover change carbon emissions. Compared to present day satellite based observational data sets (GFED3) the simulated mean deforestation fire carbon emissions (1422.5 TgC yr-1) averaged over the time period 1997-2009 are about a factor of 4 higher than the observed carbon emissions (386.4 TgC yr-1) on a global scale. However, compared to a field-observational based estimate, the simulations underestimate deforestation fire carbon emissions by around 54% for the time period 1990-2007. Generally, the simulations performed for the present study capture the observed peak fire months of deforestation fire carbon emissions. However, the length of the burning season is slightly overestimated, and the range between the maximum and minimum deforestation fire carbon emissions within a year is underestimated in the model. This study provides a consistent modelling estimate of monthly mean deforestation fire emissions for the last millennium that resolve the seasonal dependent nature of the deforestation process, which can be applied in atmospheric chemistry modelling studies.

  15. CARBON MONOXIDE EMISSIONS FROM ROAD DRIVING: EVIDENCE OF EMISSIONS DUE TO POWER ENRICHMENT

    EPA Science Inventory

    The paper examines one aspect of motor vehicle emissions behavior; i.e. emissions due to engine power enrichment, a factor not well represented in existing models. Database reflecting 46 instrumented vehicles was used to analyze the importance of enrichment emissions to overall v...

  16. EMU Lessons Learned Database

    NASA Technical Reports Server (NTRS)

    Matthews, Kevin M., Jr.; Crocker, Lori; Cupples, J. Scott

    2011-01-01

    As manned space exploration takes on the task of traveling beyond low Earth orbit, many problems arise that must be solved in order to make the journey possible. One major task is protecting humans from the harsh space environment. The current method of protecting astronauts during Extravehicular Activity (EVA) is through use of the specially designed Extravehicular Mobility Unit (EMU). As more rigorous EVA conditions need to be endured at new destinations, the suit will need to be tailored and improved in order to accommodate the astronaut. The Objective behind the EMU Lessons Learned Database(LLD) is to be able to create a tool which will assist in the development of next-generation EMUs, along with maintenance and improvement of the current EMU, by compiling data from Failure Investigation and Analysis Reports (FIARs) which have information on past suit failures. FIARs use a system of codes that give more information on the aspects of the failure, but if one is unfamiliar with the EMU they will be unable to decipher the information. A goal of the EMU LLD is to not only compile the information, but to present it in a user-friendly, organized, searchable database accessible to all familiarity levels with the EMU; both newcomers and veterans alike. The EMU LLD originally started as an Excel database, which allowed easy navigation and analysis of the data through pivot charts. Creating an entry requires access to the Problem Reporting And Corrective Action database (PRACA), which contains the original FIAR data for all hardware. FIAR data are then transferred to, defined, and formatted in the LLD. Work is being done to create a web-based version of the LLD in order to increase accessibility to all of Johnson Space Center (JSC), which includes converting entries from Excel to the HTML format. FIARs related to the EMU have been completed in the Excel version, and now focus has shifted to expanding FIAR data in the LLD to include EVA tools and support hardware such as the Pistol Grip Tool (PGT) and the Battery Charger Module (BCM), while adding any recently closed EMU-related FIARs.

  17. The HITRAN molecular database

    NASA Astrophysics Data System (ADS)

    Rothman, Laurence S.; Gordon, Iouli E.

    2013-07-01

    This presentation provides an overview of the updates and extensions of the HITRAN molecular spectroscopic absorption database. The new significantly improved parameters for the major atmospheric absorbers (for instance H2O and O2) have been given particular attention. For most of the molecules, spectral parameters have been revised and updated. The new edition also features many new spectral bands and new isotopic species. The cross-section part of the database has also been significantly extended by adding new species as well as more temperature-pressure sets for existing species. In addition, HITRAN now provides the collision-induced absorption parameters, including those relevant to the terrestrial atmosphere: N2-N2, N2-O2, O2-O2. The study of the spectroscopic signatures of planetary atmospheres is a powerful tool for extracting detailed information concerning their constituents and thermodynamic properties. The HITRAN molecular spectroscopic database has traditionally served researchers involved with terrestrial atmospheric problems, such as remote sensing of constituents in the atmosphere, pollution monitoring at the surface, and numerous environmental issues. In collaboration with laboratories across the globe, an extensive effort is currently underway to extend the HITRAN database to have capabilities for investigating a variety of planetary atmospheres. Spectroscopic parameters for gases and spectral bands of molecules that are germane to the studies of planetary atmospheres are being assembled. These parameters include the types of data that have already been considered for transmission and radiance algorithms, such as line position, intensity, broadening coefficients, lower-state energies, and temperature dependence values. A number of new molecules, including H2, CS, C4H2, HC3N, and C2N2, are being incorporated into HITRAN, while several other molecules are pending. For some of the molecules, additional parameters, beyond those currently considered for the terrestrial atmosphere, are being archived. Examples are collision-broadened half widths due to various foreign partners, collision-induced absorption, and temperature dependence factors. Collision-induced absorption data for H2-H2, H2-N2, H2-He, H2-CH4, CH4-CH4, O2-CO2 and N2-CH4 were recently released. Partition sums that are necessary for applications at a wide range of temperatures have also been calculated for a variety of molecules of planetary interest, and form an integral part of the HITRAN compilation.

  18. Using non-local databases for the environmental assessment of industrial activities: The case of Latin America

    SciTech Connect

    Osses de Eicker, Margarita; Hischier, Roland; Hurni, Hans; Zah, Rainer

    2010-04-15

    Nine non-local databases were evaluated with respect to their suitability for the environmental assessment of industrial activities in Latin America. Three assessment methods were considered, namely Life Cycle Assessment (LCA), Environmental Impact Assessment (EIA) and air emission inventories. The analysis focused on data availability in the databases and the applicability of their international data to Latin American industry. The study showed that the European EMEP/EEA Guidebook and the U.S. EPA AP-42 database are the most suitable ones for air emission inventories, whereas the LCI database Ecoinvent is the most suitable one for LCA and EIA. Due to the data coverage in the databases, air emission inventories are easier to develop than LCA or EIA, which require more comprehensive information. One strategy to overcome the limitations of non-local databases for Latin American industry is the combination of validated data from international databases with newly developed local datasets.

  19. The PEDANT genome database.

    PubMed

    Frishman, Dmitrij; Mokrejs, Martin; Kosykh, Denis; Kastenmüller, Gabi; Kolesov, Grigory; Zubrzycki, Igor; Gruber, Christian; Geier, Birgitta; Kaps, Andreas; Albermann, Kaj; Volz, Andreas; Wagner, Christian; Fellenberg, Matthias; Heumann, Klaus; Mewes, Hans-Werner

    2003-01-01

    The PEDANT genome database (http://pedant.gsf.de) provides exhaustive automatic analysis of genomic sequences by a large variety of established bioinformatics tools through a comprehensive Web-based user interface. One hundred and seventy seven completely sequenced and unfinished genomes have been processed so far, including large eukaryotic genomes (mouse, human) published recently. In this contribution, we describe the current status of the PEDANT database and novel analytical features added to the PEDANT server in 2002. Those include: (i) integration with the BioRS data retrieval system which allows fast text queries, (ii) pre-computed sequence clusters in each complete genome, (iii) a comprehensive set of tools for genome comparison, including genome comparison tables and protein function prediction based on genomic context, and (iv) computation and visualization of protein-protein interaction (PPI) networks based on experimental data. The availability of functional and structural predictions for 650 000 genomic proteins in well organized form makes PEDANT a useful resource for both functional and structural genomics. PMID:12519983

  20. The PEDANT genome database

    PubMed Central

    Frishman, Dmitrij; Mokrejs, Martin; Kosykh, Denis; Kastenmüller, Gabi; Kolesov, Grigory; Zubrzycki, Igor; Gruber, Christian; Geier, Birgitta; Kaps, Andreas; Albermann, Kaj; Volz, Andreas; Wagner, Christian; Fellenberg, Matthias; Heumann, Klaus; Mewes, Hans-Werner

    2003-01-01

    The PEDANT genome database (http://pedant.gsf.de) provides exhaustive automatic analysis of genomic sequences by a large variety of established bioinformatics tools through a comprehensive Web-based user interface. One hundred and seventy seven completely sequenced and unfinished genomes have been processed so far, including large eukaryotic genomes (mouse, human) published recently. In this contribution, we describe the current status of the PEDANT database and novel analytical features added to the PEDANT server in 2002. Those include: (i) integration with the BioRS™ data retrieval system which allows fast text queries, (ii) pre-computed sequence clusters in each complete genome, (iii) a comprehensive set of tools for genome comparison, including genome comparison tables and protein function prediction based on genomic context, and (iv) computation and visualization of protein–protein interaction (PPI) networks based on experimental data. The availability of functional and structural predictions for 650 000 genomic proteins in well organized form makes PEDANT a useful resource for both functional and structural genomics. PMID:12519983

  1. The Molecule Pages database

    PubMed Central

    Saunders, Brian; Lyon, Stephen; Day, Matthew; Riley, Brenda; Chenette, Emily; Subramaniam, Shankar

    2008-01-01

    The UCSD-Nature Signaling Gateway Molecule Pages (http://www.signaling-gateway.org/molecule) provides essential information on more than 3800 mammalian proteins involved in cellular signaling. The Molecule Pages contain expert-authored and peer-reviewed information based on the published literature, complemented by regularly updated information derived from public data source references and sequence analysis. The expert-authored data includes both a full-text review about the molecule, with citations, and highly structured data for bioinformatics interrogation, including information on protein interactions and states, transitions between states and protein function. The expert-authored pages are anonymously peer reviewed by the Nature Publishing Group. The Molecule Pages data is present in an object-relational database format and is freely accessible to the authors, the reviewers and the public from a web browser that serves as a presentation layer. The Molecule Pages are supported by several applications that along with the database and the interfaces form a multi-tier architecture. The Molecule Pages and the Signaling Gateway are routinely accessed by a very large research community. PMID:17965093

  2. UGTA Photograph Database

    SciTech Connect

    NSTec Environmental Restoration

    2009-04-20

    One of the advantages of the Nevada Test Site (NTS) is that most of the geologic and hydrologic features such as hydrogeologic units (HGUs), hydrostratigraphic units (HSUs), and faults, which are important aspects of flow and transport modeling, are exposed at the surface somewhere in the vicinity of the NTS and thus are available for direct observation. However, due to access restrictions and the remote locations of many of the features, most Underground Test Area (UGTA) participants cannot observe these features directly in the field. Fortunately, National Security Technologies, LLC, geologists and their predecessors have photographed many of these features through the years. During fiscal year 2009, work was done to develop an online photograph database for use by the UGTA community. Photographs were organized, compiled, and imported into Adobe® Photoshop® Elements 7. The photographs were then assigned keyword tags such as alteration type, HGU, HSU, location, rock feature, rock type, and stratigraphic unit. Some fully tagged photographs were then selected and uploaded to the UGTA website. This online photograph database provides easy access for all UGTA participants and can help “ground truth” their analytical and modeling tasks. It also provides new participants a resource to more quickly learn the geology and hydrogeology of the NTS.

  3. PHENIX RPC Production Database

    NASA Astrophysics Data System (ADS)

    Jones, Timothy

    2008-10-01

    The Pioneering High Energy Nuclear Interaction eXperiment (PHENIX) is located on the Relativistic Heavy Ion Collider (RHIC) ring at Brookhaven National Laboratory. A primary physics goal that can be studied by PHENIX is the origin of the proton spin. One of the types of rare events looked for in the moun arms at PHENIX are single high transverse momentum mouns, which tend to result from the decay of a W bozon. Resistive Plate Chambers (RPCs) will be used as a level 1 trigger to select these events from a large background of low transverse momentum muons. As these RPCs are assembled it is necessary to keep track of the individual parts of each RPC as well as data from various quality assurance tests in a way that will allow the information to be easily accessible years to come as the RPCs are being used. This is done through the use of a database and web page interface that can be used to enter data about the RPCs or to look up information from tests. I will be presenting on how we keep track of the RPCs, their parts, and data from quality assurance tests as they are being assembled as well as how we can retrieve this data after it has been stored in the database.

  4. The ITPA disruption database

    NASA Astrophysics Data System (ADS)

    Eidietis, N. W.; Gerhardt, S. P.; Granetz, R. S.; Kawano, Y.; Lehnen, M.; Lister, J. B.; Pautasso, G.; Riccardo, V.; Tanna, R. L.; Thornton, A. J.; ITPA Disruption Database Participants, The

    2015-06-01

    A multi-device database of disruption characteristics has been developed under the auspices of the International Tokamak Physics Activity magneto-hydrodynamics topical group. The purpose of this ITPA disruption database (IDDB) is to find the commonalities between the disruption and disruption mitigation characteristics in a wide variety of tokamaks in order to elucidate the physics underlying tokamak disruptions and to extrapolate toward much larger devices, such as ITER and future burning plasma devices. In contrast to previous smaller disruption data collation efforts, the IDDB aims to provide significant context for each shot provided, allowing exploration of a wide array of relationships between pre-disruption and disruption parameters. The IDDB presently includes contributions from nine tokamaks, including both conventional aspect ratio and spherical tokamaks. An initial parametric analysis of the available data is presented. This analysis includes current quench rates, halo current fraction and peaking, and the effectiveness of massive impurity injection. The IDDB is publicly available, with instruction for access provided herein.

  5. World Ocean Database (Invited)

    NASA Astrophysics Data System (ADS)

    Levitus, S.

    2009-12-01

    The World Ocean Database (WOD) is the largest collection of ocean profile data available internationally without restriction. WOD is produced by the NOAA National Oceanographic Data Center and its co-located World Data Center for Oceanography. The database contains data for temperature, salinity, oxygen, nutrients, tracers, among other variables. The WOD can be considered to be a collection of CDRs that are all in one common format, with systematic quality-control applied and with all available metadata and documentation made available online and DVD to make WOD useful to users. The amount of data in the WOD has grown substantially since WOD was started in 1994 for two reasons. One is the increase of data available from in situ remote-sensing systems such as moored buoys, from ship-of-opportunity programs collecting XBT data, from the Argo profiling float project, and other observing system projects. The second reason is due to the success of the Global Oceanographic Data Archaeology and Rescue (GODAR) project sponsored by the Intergovernmental Oceanographic Commission. For example this project located and rescued approximately 3 million temperature profiles for the pre-1991 period which have been added to WOD. The data in WOD have been used to make estimate of the interannual to interdecadal variability of temperature, salinity, and oxygen for the past 50 years. This talk will describe WOD and results from the GODAR project.

  6. Asbestos Exposure Assessment Database

    NASA Technical Reports Server (NTRS)

    Arcot, Divya K.

    2010-01-01

    Exposure to particular hazardous materials in a work environment is dangerous to the employees who work directly with or around the materials as well as those who come in contact with them indirectly. In order to maintain a national standard for safe working environments and protect worker health, the Occupational Safety and Health Administration (OSHA) has set forth numerous precautionary regulations. NASA has been proactive in adhering to these regulations by implementing standards which are often stricter than regulation limits and administering frequent health risk assessments. The primary objective of this project is to create the infrastructure for an Asbestos Exposure Assessment Database specific to NASA Johnson Space Center (JSC) which will compile all of the exposure assessment data into a well-organized, navigable format. The data includes Sample Types, Samples Durations, Crafts of those from whom samples were collected, Job Performance Requirements (JPR) numbers, Phased Contrast Microscopy (PCM) and Transmission Electron Microscopy (TEM) results and qualifiers, Personal Protective Equipment (PPE), and names of industrial hygienists who performed the monitoring. This database will allow NASA to provide OSHA with specific information demonstrating that JSC s work procedures are protective enough to minimize the risk of future disease from the exposures. The data has been collected by the NASA contractors Computer Sciences Corporation (CSC) and Wyle Laboratories. The personal exposure samples were collected from devices worn by laborers working at JSC and by building occupants located in asbestos-containing buildings.

  7. Curcumin Resource Database.

    PubMed

    Kumar, Anil; Chetia, Hasnahana; Sharma, Swagata; Kabiraj, Debajyoti; Talukdar, Narayan Chandra; Bora, Utpal

    2015-01-01

    Curcumin is one of the most intensively studied diarylheptanoid, Curcuma longa being its principal producer. This apart, a class of promising curcumin analogs has been generated in laboratories, aptly named as Curcuminoids which are showing huge potential in the fields of medicine, food technology, etc. The lack of a universal source of data on curcumin as well as curcuminoids has been felt by the curcumin research community for long. Hence, in an attempt to address this stumbling block, we have developed Curcumin Resource Database (CRDB) that aims to perform as a gateway-cum-repository to access all relevant data and related information on curcumin and its analogs. Currently, this database encompasses 1186 curcumin analogs, 195 molecular targets, 9075 peer reviewed publications, 489 patents and 176 varieties of C. longa obtained by extensive data mining and careful curation from numerous sources. Each data entry is identified by a unique CRDB ID (identifier). Furnished with a user-friendly web interface and in-built search engine, CRDB provides well-curated and cross-referenced information that are hyperlinked with external sources. CRDB is expected to be highly useful to the researchers working on structure as well as ligand-based molecular design of curcumin analogs. PMID:26220923

  8. Petrophysical database of Uganda

    NASA Astrophysics Data System (ADS)

    Ruotoistenmäki, Tapio; Birungi, Nelson R.

    2015-06-01

    The petrophysical database of Uganda contains data on ca. 5800 rock samples collected and analyzed during 2009-2012 in international geological and geophysical projects covering the main part of the land area of Uganda. The parameters included are the susceptibilities and densities of all available field samples. Susceptibilities were measured from the samples from three directions. Using these parameters, we also calculated the ratios of susceptibility maxima/minima reflecting direction homogeneity of magnetic minerals, and estimated the iron content of paramagnetic samples and the magnetite content of ferrimagnetic samples. Statistical and visual analysis of the petrophysical data of Uganda demonstrated their wide variation, thus emphasizing their importance in analyzing the bedrock variations in three dimensions. Using the density-susceptibility diagram, the data can be classified into six main groups: 1. A low density and susceptibility group, consisting of sedimentary and altered rocks. 2. Low-susceptibility, felsic rocks (e.g. quartzites and metasandstones). 3. Paramagnetic, felsic rocks (e.g. granites). 4. Ferrimagnetic, magnetite-containing felsic rocks (e.g. granites). 5. Paramagnetic mafic rocks (e.g. amphibolites and dolerites). 6. Ferrimagnetic, mafic rocks containing magnetite and high-density mafic minerals (mainly dolerites). Moreover, analysis revealed that the parameter distributions of even a single rock type (e.g. granites) can be very variable, forming separate clusters. This demonstrates that the simple calculation of density or susceptibility averages of rock types can be highly erratic. For example, the average can lie between two groups, where only few, if any, samples exist. Therefore, estimation of the representative density and susceptibility must be visually verified from these diagrams. The areal distribution of parameters and their calculated derivatives generally correlate well with the regional distribution of lithological and geophysical blocks. However, there are also several areas where, for instance, the low susceptibility of samples correlates poorly with high magnetic airborne anomaly data. This refers to high remanence, or the anomalies may be due to sources covered by a less magnetic sedimentary cover. The petrophysical database will be a necessity when modeling the bedrock of Uganda in three dimensions at any scale. The lithological and petrophysical databases, as well as the samples collected, will further serve as a very valuable and important basis of and provide tools for future studies on the bedrock cover of Uganda. They can be used, for example, for bedrock mapping, prospecting of valuable mineralizations, dimension stones and for environmental studies. The samples could also serve as basis for establishing a lithogeochemical database of Uganda. It is clear that the data and samples are already commercially valuable for numerous prospecting companies working in Uganda. Thus, it is important that the samples and databases are carefully, safely and permanently archived and stored for future use.

  9. The ChArMEx database

    NASA Astrophysics Data System (ADS)

    Ferré, Hélène; Belmahfoud, Nizar; Boichard, Jean-Luc; Brissebrat, Guillaume; Cloché, Sophie; Descloitres, Jacques; Fleury, Laurence; Focsa, Loredana; Henriot, Nicolas; Mière, Arnaud; Ramage, Karim; Vermeulen, Anne; Boulanger, Damien

    2015-04-01

    The Chemistry-Aerosol Mediterranean Experiment (ChArMEx, http://charmex.lsce.ipsl.fr/) aims at a scientific assessment of the present and future state of the atmospheric environment in the Mediterranean Basin, and of its impacts on the regional climate, air quality, and marine biogeochemistry. The project includes long term monitoring of environmental parameters , intensive field campaigns, use of satellite data and modelling studies. Therefore ChARMEx scientists produce and need to access a wide diversity of data. In this context, the objective of the database task is to organize data management, distribution system and services, such as facilitating the exchange of information and stimulating the collaboration between researchers within the ChArMEx community, and beyond. The database relies on a strong collaboration between ICARE, IPSL and OMP data centers and has been set up in the framework of the Mediterranean Integrated Studies at Regional And Locals Scales (MISTRALS) program data portal. ChArMEx data, either produced or used by the project, are documented and accessible through the database website: http://mistrals.sedoo.fr/ChArMEx. The website offers the usual but user-friendly functionalities: data catalog, user registration procedure, search tool to select and access data... The metadata (data description) are standardized, and comply with international standards (ISO 19115-19139; INSPIRE European Directive; Global Change Master Directory Thesaurus). A Digital Object Identifier (DOI) assignement procedure allows to automatically register the datasets, in order to make them easier to access, cite, reuse and verify. At present, the ChArMEx database contains about 120 datasets, including more than 80 in situ datasets (2012, 2013 and 2014 summer campaigns, background monitoring station of Ersa...), 25 model output sets (dust model intercomparison, MEDCORDEX scenarios...), a high resolution emission inventory over the Mediterranean... Many in situ datasets have been inserted in a relational database, in order to enable more accurate selection and download of different datasets in a shared format. Many dedicated satellite products (SEVIRI, TRIMM, PARASOL...) are processed and will soon be accessible through the database website. In order to meet the operational needs of the airborne and ground based observational teams during the ChArMEx campaigns, a day-to-day chart display website has been developed and operated: http://choc.sedoo.org. It offers a convenient way to browse weather conditions and chemical composition during the campaign periods. Every scientist is invited to visit the ChArMEx websites, to register and to request data. Feel free to contact charmex-database@sedoo.fr for any question.

  10. MetaBase—the wiki-database of biological databases

    PubMed Central

    Bolser, Dan M.; Chibon, Pierre-Yves; Palopoli, Nicolas; Gong, Sungsam; Jacob, Daniel; Angel, Victoria Dominguez Del; Swan, Dan; Bassi, Sebastian; González, Virginia; Suravajhala, Prashanth; Hwang, Seungwoo; Romano, Paolo; Edwards, Rob; Bishop, Bryan; Eargle, John; Shtatland, Timur; Provart, Nicholas J.; Clements, Dave; Renfro, Daniel P.; Bhak, Daeui; Bhak, Jong

    2012-01-01

    Biology is generating more data than ever. As a result, there is an ever increasing number of publicly available databases that analyse, integrate and summarize the available data, providing an invaluable resource for the biological community. As this trend continues, there is a pressing need to organize, catalogue and rate these resources, so that the information they contain can be most effectively exploited. MetaBase (MB) (http://MetaDatabase.Org) is a community-curated database containing more than 2000 commonly used biological databases. Each entry is structured using templates and can carry various user comments and annotations. Entries can be searched, listed, browsed or queried. The database was created using the same MediaWiki technology that powers Wikipedia, allowing users to contribute on many different levels. The initial release of MB was derived from the content of the 2007 Nucleic Acids Research (NAR) Database Issue. Since then, approximately 100 databases have been manually collected from the literature, and users have added information for over 240 databases. MB is synchronized annually with the static Molecular Biology Database Collection provided by NAR. To date, there have been 19 significant contributors to the project; each one is listed as an author here to highlight the community aspect of the project. PMID:22139927

  11. View generated database

    NASA Technical Reports Server (NTRS)

    Downward, James G.

    1992-01-01

    This document represents the final report for the View Generated Database (VGD) project, NAS7-1066. It documents the work done on the project up to the point at which all project work was terminated due to lack of project funds. The VGD was to provide the capability to accurately represent any real-world object or scene as a computer model. Such models include both an accurate spatial/geometric representation of surfaces of the object or scene, as well as any surface detail present on the object. Applications of such models are numerous, including acquisition and maintenance of work models for tele-autonomous systems, generation of accurate 3-D geometric/photometric models for various 3-D vision systems, and graphical models for realistic rendering of 3-D scenes via computer graphics.

  12. Mouse Phenome Database

    PubMed Central

    Grubb, Stephen C.; Bult, Carol J.; Bogue, Molly A.

    2014-01-01

    The Mouse Phenome Database (MPD; phenome.jax.org) was launched in 2001 as the data coordination center for the international Mouse Phenome Project. MPD integrates quantitative phenotype, gene expression and genotype data into a common annotated framework to facilitate query and analysis. MPD contains >3500 phenotype measurements or traits relevant to human health, including cancer, aging, cardiovascular disorders, obesity, infectious disease susceptibility, blood disorders, neurosensory disorders, drug addiction and toxicity. Since our 2012 NAR report, we have added >70 new data sets, including data from Collaborative Cross lines and Diversity Outbred mice. During this time we have completely revamped our homepage, improved search and navigational aspects of the MPD application, developed several web-enabled data analysis and visualization tools, annotated phenotype data to public ontologies, developed an ontology browser and released new single nucleotide polymorphism query functionality with much higher density coverage than before. Here, we summarize recent data acquisitions and describe our latest improvements. PMID:24243846

  13. Ribosomal Database Project II

    DOE Data Explorer

    The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial small-subunit 16S rRNA sequences. As of March 2008, RDP Release 10 is available and currently (August 2009) contains 1,074,075 aligned 16S rRNA sequences. Data that can be downloaded include zipped GenBank and FASTA alignment files, a histogram (in Excel) of the number of RDP sequences spanning each base position, data in the Functional Gene Pipeline Repository, and various user submitted data. The RDP-II website also provides numerous analysis tools.[From the RDP-II home page at http://rdp.cme.msu.edu/index.jsp

  14. Inorganic Crystal Structure Database (ICSD)

    National Institute of Standards and Technology Data Gateway

    SRD 84 FIZ/NIST Inorganic Crystal Structure Database (ICSD) (PC database for purchase)   The Inorganic Crystal Structure Database (ICSD) is produced cooperatively by the Fachinformationszentrum Karlsruhe(FIZ) and the National Institute of Standards and Technology (NIST). The ICSD is a comprehensive collection of crystal structure data of inorganic compounds containing more than 140,000 entries and covering the literature from 1915 to the present.

  15. Intrusion Detection in Database Systems

    NASA Astrophysics Data System (ADS)

    Javidi, Mohammad M.; Sohrabi, Mina; Rafsanjani, Marjan Kuchaki

    Data represent today a valuable asset for organizations and companies and must be protected. Ensuring the security and privacy of data assets is a crucial and very difficult problem in our modern networked world. Despite the necessity of protecting information stored in database systems (DBS), existing security models are insufficient to prevent misuse, especially insider abuse by legitimate users. One mechanism to safeguard the information in these databases is to use an intrusion detection system (IDS). The purpose of Intrusion detection in database systems is to detect transactions that access data without permission. In this paper several database Intrusion detection approaches are evaluated.

  16. Biological Databases for Behavioral Neurobiology

    PubMed Central

    Baker, Erich J.

    2014-01-01

    Databases are, at their core, abstractions of data and their intentionally derived relationships. They serve as a central organizing metaphor and repository, supporting or augmenting nearly all bioinformatics. Behavioral domains provide a unique stage for contemporary databases, as research in this area spans diverse data types, locations, and data relationships. This chapter provides foundational information on the diversity and prevalence of databases, how data structures support the various needs of behavioral neuroscience analysis and interpretation. The focus is on the classes of databases, data curation, and advanced applications in bioinformatics using examples largely drawn from research efforts in behavioral neuroscience. PMID:23195119

  17. Relativistic quantum private database queries

    NASA Astrophysics Data System (ADS)

    Sun, Si-Jia; Yang, Yu-Guang; Zhang, Ming-Ou

    2015-04-01

    Recently, Jakobi et al. (Phys Rev A 83, 022301, 2011) suggested the first practical private database query protocol (J-protocol) based on the Scarani et al. (Phys Rev Lett 92, 057901, 2004) quantum key distribution protocol. Unfortunately, the J-protocol is just a cheat-sensitive private database query protocol. In this paper, we present an idealized relativistic quantum private database query protocol based on Minkowski causality and the properties of quantum information. Also, we prove that the protocol is secure in terms of the user security and the database security.

  18. Physical database support for scientific and statistical database management

    SciTech Connect

    Olken, F.

    1986-05-01

    Various physical database techniques that can be used to implement scientific and statistical database management systems are surveyed. Techniques for storing the data, and algorithms for query processing are considered. File structures, access methods, compression methods, buffering strategies, and algorithms for aggregation, transposition, and sampling are discussed. Areas for future research are mentioned. 75 refs. (DWL)

  19. FINE PARTICLE EMISSIONS INFORMATION SYSTEM REFERENCE MANUAL

    EPA Science Inventory

    The report is a basic reference manual on the Fine Particle Emissions Information System (FPEIS), a computerized database on primary fine particle emissions to the atmosphere from stationary point sources. The FPEIS is a component of the Environmental Assessment Data Systems (EAD...

  20. The Protein Ensemble Database.

    PubMed

    Varadi, Mihaly; Tompa, Peter

    2015-01-01

    The scientific community's major conceptual notion of structural biology has recently shifted in emphasis from the classical structure-function paradigm due to the emergence of intrinsically disordered proteins (IDPs). As opposed to their folded cousins, these proteins are defined by the lack of a stable 3D fold and a high degree of inherent structural heterogeneity that is closely tied to their function. Due to their flexible nature, solution techniques such as small-angle X-ray scattering (SAXS), nuclear magnetic resonance (NMR) spectroscopy and fluorescence resonance energy transfer (FRET) are particularly well-suited for characterizing their biophysical properties. Computationally derived structural ensembles based on such experimental measurements provide models of the conformational sampling displayed by these proteins, and they may offer valuable insights into the functional consequences of inherent flexibility. The Protein Ensemble Database (http://pedb.vib.be) is the first openly accessible, manually curated online resource storing the ensemble models, protocols used during the calculation procedure, and underlying primary experimental data derived from SAXS and/or NMR measurements. By making this previously inaccessible data freely available to researchers, this novel resource is expected to promote the development of more advanced modelling methodologies, facilitate the design of standardized calculation protocols, and consequently lead to a better understanding of how function arises from the disordered state. PMID:26387108

  1. The Mars Observer database

    NASA Technical Reports Server (NTRS)

    Albee, Arden L.

    1988-01-01

    Mars Observer will study the surface, atmosphere, and climate of Mars in a systematic way over an entire Martian year. The observations of the surface will provide a database that will be invaluable to the planning of a future Mars sample return mission. Mars Observer is planned for a September 1992 launch from the Space Shuttle, using an upper-stage. After the one year transit the spacecraft is injected into orbit about Mars and the orbit adjusted to a near-circular, sun-synchronous low-altitude, polar orbit. During the Martian year in this mapping orbit the instruments gather both geoscience data and climatological data by repetitive global mapping. The scientific objectives of the mission are to: (1) determine the global elemental and mineralogical character of the surface material; (2) define globally the topography and gravitational field; (3) establish the nature of the magnetic field; (4) determine the time and space distribution, abundance, sources, and sinks of volatile material and dust over a seasonal cycle; and (5) explore the structure and aspects of the circulation of the atmosphere. The science investigations and instruments for Mars Observer have been chosen with these objectives in mind. These instruments, the principal investigator or team leader and the objectives are discussed.

  2. Database Quality: Label or Liable.

    ERIC Educational Resources Information Center

    Armstrong, C. J.

    The Centre for Information Quality Management (CIQM) was set up by the Library Association and UK (United Kingdom) Online User Group to act as a clearinghouse to which database users may report problems relating to the quality of any aspect of a database being used. CIQM acts as an intermediary between the user and information provider in…

  3. Content Independence in Multimedia Databases.

    ERIC Educational Resources Information Center

    de Vries, Arjen P.

    2001-01-01

    Investigates the role of data management in multimedia digital libraries, and its implications for the design of database management systems. Introduces the notions of content abstraction and content independence. Proposes a blueprint of a new class of database technology, which supports the basic functionality for the management of both content

  4. SPINAL CORD INJURY (SCI) DATABASE

    EPA Science Inventory

    The National Spinal Cord Injury Database has been in existence since 1973 and captures data from SCI cases in the United States. Since its inception, 24 federally funded Model SCI Care Systems have contributed data to the National SCI Database. Statistics are derived from this da...

  5. The ENZYME database in 2000.

    PubMed

    Bairoch, A

    2000-01-01

    The ENZYME database is a repository of information related to the nomenclature of enzymes. In recent years it has became an indispensable resource for the development of metabolic databases. The current version contains information on 3705 enzymes. It is available through the ExPASy WWW server (http://www.expasy.ch/enzyme/ ). PMID:10592255

  6. The ENZYME database in 2000

    PubMed Central

    Bairoch, Amos

    2000-01-01

    The ENZYME database is a repository of information related to the nomenclature of enzymes. In recent years it has became an indispensable resource for the development of metabolic databases. The current version contains information on 3705 enzymes. It is available through the ExPASy WWW server (http://www. expasy.ch/enzyme/ ). PMID:10592255

  7. Alternative Databases for Anthropology Searching.

    ERIC Educational Resources Information Center

    Brody, Fern; Lambert, Maureen

    1984-01-01

    Examines online search results of sample questions in several databases covering linguistics, cultural anthropology, and physical anthropology in order to determine if and where any overlap in results might occur, and which files have greatest number of relevant hits. Search results by database are given for each subject area. (EJS)

  8. XCOM: Photon Cross Sections Database

    National Institute of Standards and Technology Data Gateway

    SRD 8 XCOM: Photon Cross Sections Database (Web, free access)   A web database is provided which can be used to calculate photon cross sections for scattering, photoelectric absorption and pair production, as well as total attenuation coefficients, for any element, compound or mixture (Z <= 100) at energies from 1 keV to 100 GeV.

  9. The EUVE satellite survey database

    NASA Technical Reports Server (NTRS)

    Craig, N.; Chen, T.; Hawkins, I.; Fruscione, A.

    1993-01-01

    The EUVE survey database contains fundamental science data for 9000 potential source locations (pigeonholes) in the sky. The first release of the Bright Source List is now available to the public through an interface with the NASA Astrophysical Data System. We describe the database schema design and the EUVE source categorization algorithm that compares sources to the ROSAT Wide Field Camera source list.

  10. Hanford Site technical baseline database

    SciTech Connect

    Porter, P.E., Westinghouse Hanford

    1996-05-10

    This document includes a cassette tape that contains the Hanford specific files that make up the Hanford Site Technical Baseline Database as of May 10, 1996. The cassette tape also includes the delta files that delineate the differences between this revision and revision 3 (April 10, 1996) of the Hanford Site Technical Baseline Database.

  11. Database Proliferation: Implications for Librarians.

    ERIC Educational Resources Information Center

    Nichol, Kathleen M.

    1983-01-01

    Discusses problems of increasing numbers of databases (standardization, vendor contracts, training, restricted access, duplicate citations), noting implications for change in librarian's role as supplier of decision making data (education, users groups, search aids, information brokers, collection evaluation, reference and source databases,

  12. The Student-Designed Database.

    ERIC Educational Resources Information Center

    Thomas, Rick

    1988-01-01

    This discussion of the design of data files for databases to be created by secondary school students uses AppleWorks software as an example. Steps needed to create and use a database are explained, the benefits of group activity are described, and other possible projects are listed. (LRW)

  13. DRUG ENFORCEMENT ADMINISTRATION REGISTRATION DATABASE

    EPA Science Inventory

    The Drug Enforcement Administration (DEA), as part of its efforts to control the abuse and misuse of controlled substances and chemicals used in producing some over-the-counter drugs, maintains databases of individuals registered to handle these substances. These databases are av...

  14. Database Licensing: A Future View.

    ERIC Educational Resources Information Center

    Flanagan, Michael

    1993-01-01

    Access to database information in libraries will increase as licenses for tape loading of data onto public access catalogs becomes more widespread. Institutions with adequate storage capacity will have full text databases, and the adoption of the Z39.50 standard, which allows differing computer systems to interface with each other, will increase…

  15. Wind turbine reliability database update.

    SciTech Connect

    Peters, Valerie A.; Hill, Roger Ray; Stinebaugh, Jennifer A.; Veers, Paul S.

    2009-03-01

    This report documents the status of the Sandia National Laboratories' Wind Plant Reliability Database. Included in this report are updates on the form and contents of the Database, which stems from a fivestep process of data partnerships, data definition and transfer, data formatting and normalization, analysis, and reporting. Selected observations are also reported.

  16. Content Independence in Multimedia Databases.

    ERIC Educational Resources Information Center

    de Vries, Arjen P.

    2001-01-01

    Investigates the role of data management in multimedia digital libraries, and its implications for the design of database management systems. Introduces the notions of content abstraction and content independence. Proposes a blueprint of a new class of database technology, which supports the basic functionality for the management of both content…

  17. A database for propagation models

    NASA Technical Reports Server (NTRS)

    Kantak, Anil V.; Suwitra, Krisjani S.

    1992-01-01

    In June 1991, a paper at the fifteenth NASA Propagation Experimenters Meeting (NAPEX 15) was presented outlining the development of a database for propagation models. The database is designed to allow the scientists and experimenters in the propagation field to process their data through any known and accepted propagation model. The architecture of the database also incorporates the possibility of changing the standard models in the database to fit the scientist's or the experimenter's needs. The database not only provides powerful software to process the data generated by the experiments, but is also a time- and energy-saving tool for plotting results, generating tables, and producing impressive and crisp hard copy for presentation and filing.

  18. The magnet components database system

    SciTech Connect

    Baggett, M.J. ); Leedy, R.; Saltmarsh, C.; Tompkins, J.C. )

    1990-01-01

    The philosophy, structure, and usage MagCom, the SSC magnet components database, are described. The database has been implemented in Sybase (a powerful relational database management system) on a UNIX-based workstation at the Superconducting Super Collider Laboratory (SSCL); magnet project collaborators can access the database via network connections. The database was designed to contain the specifications and measured values of important properties for major materials, plus configuration information (specifying which individual items were used in each cable, coil, and magnet) and the test results on completed magnets. These data will facilitate the tracking and control of the production process as well as the correlation of magnet performance with the properties of its constituents. 3 refs., 10 figs.

  19. SPECIATE--EPA'S DATABASE OF SPECIATED EMISSION PROFILES

    EPA Science Inventory

    SPECIATE is EPA's repository of Total Organic Compound and Particulate Matter speciated profiles for a wide variety of sources. The profiles in this system are provided for air quality dispersion modeling and as a library for source-receptor and source apportionment type models. ...

  20. GOTTCHA Database, Version 1

    SciTech Connect

    Freitas, Tracey; Chain, Patrick; Lo, Chien-Chi; Li, Po-E

    2015-08-03

    One major challenge in the field of shotgun metagenomics is the accurate identification of the organisms present within the community, based on classification of short sequence reads. Though microbial community profiling methods have emerged to attempt to rapidly classify the millions of reads output from contemporary sequencers, the combination of incomplete databases, similarity among otherwise divergent genomes, and the large volumes of sequencing data required for metagenome sequencing has led to unacceptably high false discovery rates (FDR). Here we present the application of a novel, gene-independent and signature-based metagenomic taxonomic profiling tool with significantly smaller FDR, which is also capable of classifying never-before seen genomes into the appropriate parent taxa.The algorithm is based upon three primary computational phases: (I) genomic decomposition into bit vectors, (II) bit vector intersections to identify shared regions, and (III) bit vector subtractions to remove shared regions and reveal unique, signature regions.In the Decomposition phase, genomic data is first masked to highlight only the valid (non-ambiguous) regions and then decomposed into overlapping 24-mers. The k-mers are sorted along with their start positions, de-replicated, and then prefixed, to minimize data duplication. The prefixes are indexed and an identical data structure is created for the start positions to mimic that of the k-mer data structure.During the Intersection phase -- which is the most computationally intensive phase -- as an all-vs-all comparison is made, the number of comparisons is first reduced by four methods: (a) Prefix restriction, (b) Overlap detection, (c) Overlap restriction, and (d) Result recording. In Prefix restriction, only k-mers of the same prefix are compared. Within that group, potential overlap of k-mer suffixes that would result in a non-empty set intersection are screened for. If such an overlap exists, the region which intersects is first reduced by performing a binary search of the boundary suffixes of the smaller set into the larger set, which defines the limits of the zipper-based intersection process. Rather than recording the actual k-mers of the intersection, another data structure of identical "shape" is created which consists of only bit vectors so that only a 1 or 0 will be stored in the location of the k-mer suffix that was found in the intersection. This reduces the amount of data generated and stored considerably.During the Subtraction phase, relevant intersection bitmasks are first unionized together to form a single bitmask which is then applied over the original genome to reveal only those regions of the genome that are unique. These regions are then exported to disk in FASTA format and used in the application of determining the constituents of an unknown metagenomic community.The DATABASE provided is the result of the algorithm described.

  1. GOTTCHA Database, Version 1

    Energy Science and Technology Software Center (ESTSC)

    2015-08-03

    One major challenge in the field of shotgun metagenomics is the accurate identification of the organisms present within the community, based on classification of short sequence reads. Though microbial community profiling methods have emerged to attempt to rapidly classify the millions of reads output from contemporary sequencers, the combination of incomplete databases, similarity among otherwise divergent genomes, and the large volumes of sequencing data required for metagenome sequencing has led to unacceptably high false discoverymore » rates (FDR). Here we present the application of a novel, gene-independent and signature-based metagenomic taxonomic profiling tool with significantly smaller FDR, which is also capable of classifying never-before seen genomes into the appropriate parent taxa.The algorithm is based upon three primary computational phases: (I) genomic decomposition into bit vectors, (II) bit vector intersections to identify shared regions, and (III) bit vector subtractions to remove shared regions and reveal unique, signature regions.In the Decomposition phase, genomic data is first masked to highlight only the valid (non-ambiguous) regions and then decomposed into overlapping 24-mers. The k-mers are sorted along with their start positions, de-replicated, and then prefixed, to minimize data duplication. The prefixes are indexed and an identical data structure is created for the start positions to mimic that of the k-mer data structure.During the Intersection phase -- which is the most computationally intensive phase -- as an all-vs-all comparison is made, the number of comparisons is first reduced by four methods: (a) Prefix restriction, (b) Overlap detection, (c) Overlap restriction, and (d) Result recording. In Prefix restriction, only k-mers of the same prefix are compared. Within that group, potential overlap of k-mer suffixes that would result in a non-empty set intersection are screened for. If such an overlap exists, the region which intersects is first reduced by performing a binary search of the boundary suffixes of the smaller set into the larger set, which defines the limits of the zipper-based intersection process. Rather than recording the actual k-mers of the intersection, another data structure of identical "shape" is created which consists of only bit vectors so that only a 1 or 0 will be stored in the location of the k-mer suffix that was found in the intersection. This reduces the amount of data generated and stored considerably.During the Subtraction phase, relevant intersection bitmasks are first unionized together to form a single bitmask which is then applied over the original genome to reveal only those regions of the genome that are unique. These regions are then exported to disk in FASTA format and used in the application of determining the constituents of an unknown metagenomic community.The DATABASE provided is the result of the algorithm described.« less

  2. Lagrangian modelling tool for IAGOS database added-value products

    NASA Astrophysics Data System (ADS)

    Fontaine, Alain; Auby, Antoine; Petetin, Hervé; Sauvage, Bastien; Thouret, Valérie; Boulanger, Damien

    2015-04-01

    Since 1994, the IAGOS (In-Service Aircraft for a Global Observing System, http://www.iagos.fr) project has produced in-situ measurements of chemical as ozone, carbon monoxide or nitrogen oxides species through more than 40000 commercial aircraft flights. In order to help analysing these observations a tool which links the observed pollutants to their sources was developped based on the Stohl et al. (2003) methodology. Build on the lagrangian particle dispersion model FLEXPART coupled with ECMWF meteorological fields, this tool simulates contributions of anthropogenic and biomass burning emissions from the ECCAD database, to the measured carbon monoxide mixing ratio along each IAGOS flight. Thanks to automated processes, 20-days backward simulation are run from the observation, separating individual contributions from the different source regions. The main goal is to supply added-value product to the IAGOS database showing pollutants geographical origin and emission type and link trends in the atmospheric composition to changes in the transport pathways and to the evolution of emissions. This tool may also be used for statistical validation for intercomparisons of emission inventories, where they can be compared to the in-situ observations from the IAGOS database.

  3. The EMBL Nucleotide Sequence Database.

    PubMed

    Stoesser, Guenter; Baker, Wendy; van den Broek, Alexandra; Camon, Evelyn; Garcia-Pastor, Maria; Kanz, Carola; Kulikova, Tamara; Leinonen, Rasko; Lin, Quan; Lombard, Vincent; Lopez, Rodrigo; Redaschi, Nicole; Stoehr, Peter; Tuli, Mary Ann; Tzouvara, Katerina; Vaughan, Robert

    2002-01-01

    The EMBL Nucleotide Sequence Database (aka EMBL-Bank; http://www.ebi.ac.uk/embl/) incorporates, organises and distributes nucleotide sequences from all available public sources. EMBL-Bank is located and maintained at the European Bioinformatics Institute (EBI) near Cambridge, UK. In an international collaboration with DDBJ (Japan) and GenBank (USA), data are exchanged amongst the collaborating databases on a daily basis. Major contributors to the EMBL database are individual scientists and genome project groups. Webin is the preferred web-based submission system for individual submitters, whilst automatic procedures allow incorporation of sequence data from large-scale genome sequencing centres and from the European Patent Office (EPO). Database releases are produced quarterly. Network services allow free access to the most up-to-date data collection via FTP, email and World Wide Web interfaces. EBI's Sequence Retrieval System (SRS), a network browser for databanks in molecular biology, integrates and links the main nucleotide and protein databases plus many other specialized databases. For sequence similarity searching, a variety of tools (e.g. Blitz, Fasta, BLAST) are available which allow external users to compare their own sequences against the latest data in the EMBL Nucleotide Sequence Database and SWISS-PROT. All resources can be accessed via the EBI home page at http://www.ebi.ac.uk. PMID:11752244

  4. Population databases in development analysis.

    PubMed

    Chamie, J

    1994-01-01

    Population databases are very important in formulating analyses of social and economic change and development. Since such analyses are often the basis for policy making and program formulation, it is important to have a sound understanding of their strengths and limitations. This paper focuses upon databases which deal with population size, life expectancy at birth, and infant mortality. Considerable progress has been made in producing population databases over the last several decades, but many problems remain with regard to their comparability, completeness of coverage, and accuracy. Governmental and political circumstances greatly influence the availability and quality of population databases. Globally, the comparability of data remains a serious concern due to deviations from standard definitions. The completeness of coverage of databases among less developed countries varies widely by region, while the data for preparing estimates and assessing demographic trends are deficient and problematic. Technological advances and the repackaging of population databases have greatly advanced their production and availability, but confusion and ignorance have become widespread regarding the original source and nature of the data. Database users therefore too often undertake faulty analyses which lead to false conclusions. PMID:12290678

  5. Database tomography for commercial application

    NASA Technical Reports Server (NTRS)

    Kostoff, Ronald N.; Eberhart, Henry J.

    1994-01-01

    Database tomography is a method for extracting themes and their relationships from text. The algorithms, employed begin with word frequency and word proximity analysis and build upon these results. When the word 'database' is used, think of medical or police records, patents, journals, or papers, etc. (any text information that can be computer stored). Database tomography features a full text, user interactive technique enabling the user to identify areas of interest, establish relationships, and map trends for a deeper understanding of an area of interest. Database tomography concepts and applications have been reported in journals and presented at conferences. One important feature of the database tomography algorithm is that it can be used on a database of any size, and will facilitate the users ability to understand the volume of content therein. While employing the process to identify research opportunities it became obvious that this promising technology has potential applications for business, science, engineering, law, and academe. Examples include evaluating marketing trends, strategies, relationships and associations. Also, the database tomography process would be a powerful component in the area of competitive intelligence, national security intelligence and patent analysis. User interests and involvement cannot be overemphasized.

  6. Database of Properties of Meteors

    NASA Technical Reports Server (NTRS)

    Suggs, Rob; Anthea, Coster

    2006-01-01

    A database of properties of meteors, and software that provides access to the database, are being developed as a contribution to continuing efforts to model the characteristics of meteors with increasing accuracy. Such modeling is necessary for evaluation of the risk of penetration of spacecraft by meteors. For each meteor in the database, the record will include an identification, date and time, radiant properties, ballistic coefficient, radar cross section, size, density, and orbital elements. The property of primary interest in the present case is density, and one of the primary goals in this case is to derive densities of meteors from their atmospheric decelerations. The database and software are expected to be valid anywhere in the solar system. The database will incorporate new data plus results of meteoroid analyses that, heretofore, have not been readily available to the aerospace community. Taken together, the database and software constitute a model that is expected to provide improved estimates of densities and to result in improved risk analyses for interplanetary spacecraft. It is planned to distribute the database and software on a compact disk.

  7. Unifying Memory and Database Transactions

    NASA Astrophysics Data System (ADS)

    Dias, Ricardo J.; Lourenço, João M.

    Software Transactional Memory is a concurrency control technique gaining increasing popularity, as it provides high-level concurrency control constructs and eases the development of highly multi-threaded applications. But this easiness comes at the expense of restricting the operations that can be executed within a memory transaction, and operations such as terminal and file I/O are either not allowed or incur in serious performance penalties. Database I/O is another example of operations that usually are not allowed within a memory transaction. This paper proposes to combine memory and database transactions in a single unified model, benefiting from the ACID properties of the database transactions and from the speed of main memory data processing. The new unified model covers, without differentiating, both memory and database operations. Thus, the users are allowed to freely intertwine memory and database accesses within the same transaction, knowing that the memory and database contents will always remain consistent and that the transaction will atomically abort or commit the operations in both memory and database. This approach allows to increase the granularity of the in-memory atomic actions and hence, simplifies the reasoning about them.

  8. GLOBAL ECOSYSTEMS DATABASE: DATABASE DOCUMENTATION AND CD-ROM

    EPA Science Inventory

    The primary objective of this cooperative research and development is to produce an integrated, quality controlled, global database (including time sequences) for spatially distributed modeling. he project concentrates on modern observational data, including remotely sensed data ...

  9. Databases of the marine metagenomics.

    PubMed

    Mineta, Katsuhiko; Gojobori, Takashi

    2016-02-01

    The metagenomic data obtained from marine environments is significantly useful for understanding marine microbial communities. In comparison with the conventional amplicon-based approach of metagenomics, the recent shotgun sequencing-based approach has become a powerful tool that provides an efficient way of grasping a diversity of the entire microbial community at a sampling point in the sea. However, this approach accelerates accumulation of the metagenome data as well as increase of data complexity. Moreover, when metagenomic approach is used for monitoring a time change of marine environments at multiple locations of the seawater, accumulation of metagenomics data will become tremendous with an enormous speed. Because this kind of situation has started becoming of reality at many marine research institutions and stations all over the world, it looks obvious that the data management and analysis will be confronted by the so-called Big Data issues such as how the database can be constructed in an efficient way and how useful knowledge should be extracted from a vast amount of the data. In this review, we summarize the outline of all the major databases of marine metagenome that are currently publically available, noting that database exclusively on marine metagenome is none but the number of metagenome databases including marine metagenome data are six, unexpectedly still small. We also extend our explanation to the databases, as reference database we call, that will be useful for constructing a marine metagenome database as well as complementing important information with the database. Then, we would point out a number of challenges to be conquered in constructing the marine metagenome database. PMID:26518717

  10. Draft secure medical database standard.

    PubMed

    Pangalos, George

    2002-01-01

    Medical database security is a particularly important issue for all Healthcare establishments. Medical information systems are intended to support a wide range of pertinent health issues today, for example: assure the quality of care, support effective management of the health services institutions, monitor and contain the cost of care, implement technology into care without violating social values, ensure the equity and availability of care, preserve humanity despite the proliferation of technology etc.. In this context, medical database security aims primarily to support: high availability, accuracy and consistency of the stored data, the medical professional secrecy and confidentiality, and the protection of the privacy of the patient. These properties, though of technical nature, basically require that the system is actually helpful for medical care and not harmful to patients. These later properties require in turn not only that fundamental ethical principles are not violated by employing database systems, but instead, are effectively enforced by technical means. This document reviews the existing and emerging work on the security of medical database systems. It presents in detail the related problems and requirements related to medical database security. It addresses the problems of medical database security policies, secure design methodologies and implementation techniques. It also describes the current legal framework and regulatory requirements for medical database security. The issue of medical database security guidelines is also examined in detailed. The current national and international efforts in the area are studied. It also gives an overview of the research work in the area. The document also presents in detail the most complete to our knowledge set of security guidelines for the development and operation of medical database systems. PMID:15458163

  11. Cloudsat tropical cyclone database

    NASA Astrophysics Data System (ADS)

    Tourville, Natalie D.

    CloudSat (CS), the first 94 GHz spaceborne cloud profiling radar (CPR), launched in 2006 to study the vertical distribution of clouds. Not only are CS observations revealing inner vertical cloud details of water and ice globally but CS overpasses of tropical cyclones (TC's) are providing a new and exciting opportunity to study the vertical structure of these storm systems. CS TC observations are providing first time vertical views of TC's and demonstrate a unique way to observe TC structure remotely from space. Since December 2009, CS has intersected every globally named TC (within 1000 km of storm center) for a total of 5,278 unique overpasses of tropical systems (disturbance, tropical depression, tropical storm and hurricane/typhoon/cyclone (HTC)). In conjunction with the Naval Research Laboratory (NRL), each CS TC overpass is processed into a data file containing observational data from the afternoon constellation of satellites (A-TRAIN), Navy's Operational Global Atmospheric Prediction System Model (NOGAPS), European Center for Medium range Weather Forecasting (ECMWF) model and best track storm data. This study will describe the components and statistics of the CS TC database, present case studies of CS TC overpasses with complementary A-TRAIN observations and compare average reflectivity stratifications of TC's across different atmospheric regimes (wind shear, SST, latitude, maximum wind speed and basin). Average reflectivity stratifications reveal that characteristics in each basin vary from year to year and are dependent upon eye overpasses of HTC strength storms and ENSO phase. West Pacific (WPAC) basin storms are generally larger in size (horizontally and vertically) and have greater values of reflectivity at a predefined height than all other basins. Storm structure at higher latitudes expands horizontally. Higher vertical wind shear (≥ 9.5 m/s) reduces cloud top height (CTH) and the intensity of precipitation cores, especially in HTC strength storms. Average zero and ten dBZ height thresholds confirm WPAC storms loft precipitation sized particles higher into the atmosphere than in other basins. Two CS eye overpasses (32 hours apart) of a weakening Typhoon Nida in 2009 reveal the collapse of precipitation cores, warm core anomaly and upper tropospheric ice water content (IWC) under steady moderate shear conditions.

  12. International forensic automotive paint database

    NASA Astrophysics Data System (ADS)

    Bishea, Gregory A.; Buckle, Joe L.; Ryland, Scott G.

    1999-02-01

    The Technical Working Group for Materials Analysis (TWGMAT) is supporting an international forensic automotive paint database. The Federal Bureau of Investigation and the Royal Canadian Mounted Police (RCMP) are collaborating on this effort through TWGMAT. This paper outlines the support and further development of the RCMP's Automotive Paint Database, `Paint Data Query'. This cooperative agreement augments and supports a current, validated, searchable, automotive paint database that is used to identify make(s), model(s), and year(s) of questioned paint samples in hit-and-run fatalities and other associated investigations involving automotive paint.

  13. Biological Databases for Human Research

    PubMed Central

    Zou, Dong; Ma, Lina; Yu, Jun; Zhang, Zhang

    2015-01-01

    The completion of the Human Genome Project lays a foundation for systematically studying the human genome from evolutionary history to precision medicine against diseases. With the explosive growth of biological data, there is an increasing number of biological databases that have been developed in aid of human-related research. Here we present a collection of human-related biological databases and provide a mini-review by classifying them into different categories according to their data types. As human-related databases continue to grow not only in count but also in volume, challenges are ahead in big data storage, processing, exchange and curation. PMID:25712261

  14. Database of recent tsunami deposits

    USGS Publications Warehouse

    Peters, Robert; Jaffe, Bruce E.

    2010-01-01

    This report describes a database of sedimentary characteristics of tsunami deposits derived from published accounts of tsunami deposit investigations conducted shortly after the occurrence of a tsunami. The database contains 228 entries, each entry containing data from up to 71 categories. It includes data from 51 publications covering 15 tsunamis distributed between 16 countries. The database encompasses a wide range of depositional settings including tropical islands, beaches, coastal plains, river banks, agricultural fields, and urban environments. It includes data from both local tsunamis and teletsunamis. The data are valuable for interpreting prehistorical, historical, and modern tsunami deposits, and for the development of criteria to identify tsunami deposits in the geologic record.

  15. NUCLEAR DATABASES FOR REACTOR APPLICATIONS.

    SciTech Connect

    PRITYCHENKO, B.; ARCILLA, R.; BURROWS, T.; HERMAN, M.W.; MUGHABGHAB, S.; OBLOZINSKY, P.; ROCHMAN, D.; SONZOGNI, A.A.; TULI, J.; WINCHELL, D.F.

    2006-06-05

    The National Nuclear Data Center (NNDC): An overview of nuclear databases, related products, nuclear data Web services and publications. The NNDC collects, evaluates, and disseminates nuclear physics data for basic research and applied nuclear technologies. The NNDC maintains and contributes to the nuclear reaction (ENDF, CSISRS) and nuclear structure databases along with several others databases (CapGam, MIRD, IRDF-2002) and provides coordination for the Cross Section Evaluation Working Group (CSEWG) and the US Nuclear Data Program (USNDP). The Center produces several publications and codes such as Atlas of Neutron Resonances, Nuclear Wallet Cards booklets and develops codes, such as nuclear reaction model code Empire.

  16. The ChArMEx database

    NASA Astrophysics Data System (ADS)

    Ferré, Helene; Belmahfoud, Nizar; Boichard, Jean-Luc; Brissebrat, Guillaume; Descloitres, Jacques; Fleury, Laurence; Focsa, Loredana; Henriot, Nicolas; Mastrorillo, Laurence; Mière, Arnaud; Vermeulen, Anne

    2014-05-01

    The Chemistry-Aerosol Mediterranean Experiment (ChArMEx, http://charmex.lsce.ipsl.fr/) aims at a scientific assessment of the present and future state of the atmospheric environment in the Mediterranean Basin, and of its impacts on the regional climate, air quality, and marine biogeochemistry. The project includes long term monitoring of environmental parameters, intensive field campaigns, use of satellite data and modelling studies. Therefore ChARMEx scientists produce and need to access a wide diversity of data. In this context, the objective of the database task is to organize data management, distribution system and services, such as facilitating the exchange of information and stimulating the collaboration between researchers within the ChArMEx community, and beyond. The database relies on a strong collaboration between OMP and ICARE data centres and has been set up in the framework of the Mediterranean Integrated Studies at Regional And Locals Scales (MISTRALS) program data portal. All the data produced by or of interest for the ChArMEx community will be documented in the data catalogue and accessible through the database website: http://mistrals.sedoo.fr/ChArMEx. At present, the ChArMEx database contains about 75 datasets, including 50 in situ datasets (2012 and 2013 campaigns, Ersa background monitoring station), 25 model outputs (dust model intercomparison, MEDCORDEX scenarios), and a high resolution emission inventory over the Mediterranean. Many in situ datasets have been inserted in a relational database, in order to enable more accurate data selection and download of different datasets in a shared format. The database website offers different tools: - A registration procedure which enables any scientist to accept the data policy and apply for a user database account. - A data catalogue that complies with metadata international standards (ISO 19115-19139; INSPIRE European Directive; Global Change Master Directory Thesaurus). - Metadata forms to document observations or products that will be provided to the database. - A search tool to browse the catalogue using thematic, geographic and/or temporal criteria. - A shopping-cart web interface to order in situ data files. - A web interface to select and access to homogenized datasets. Interoperability between the two data centres is being set up using the OPEnDAP protocol. The data portal will soon propose a user-friendly access to satellite products managed by the ICARE data centre (SEVIRI, TRIMM, PARASOL...). In order to meet the operational needs of the airborne and ground based observational teams during the ChArMEx 2012 and 2013 campaigns, a day-to-day chart and report display website has been developed too: http://choc.sedoo.org. It offers a convenient way to browse weather conditions and chemical composition during the campaign periods.

  17. Mouse Resource Browser—a database of mouse databases

    PubMed Central

    Zouberakis, Michael; Chandras, Christina; Swertz, Morris; Smedley, Damian; Gruenberger, Michael; Bard, Jonathan; Schughart, Klaus; Rosenthal, Nadia; Hancock, John M.; Schofield, Paul N.; Kollias, George; Aidinis, Vassilis

    2010-01-01

    The laboratory mouse has become the organism of choice for discovering gene function and unravelling pathogenetic mechanisms of human diseases through the application of various functional genomic approaches. The resulting deluge of data has led to the deployment of numerous online resources and the concomitant need for formalized experimental descriptions, data standardization, database interoperability and integration, a need that has yet to be met. We present here the Mouse Resource Browser (MRB), a database of mouse databases that indexes 217 publicly available mouse resources under 22 categories and uses a standardised database description framework (the CASIMIR DDF) to provide information on their controlled vocabularies (ontologies and minimum information standards), and technical information on programmatic access and data availability. Focusing on interoperability and integration, MRB offers automatic generation of downloadable and re-distributable SOAP application-programming interfaces for resources that provide direct database access. MRB aims to provide useful information to both bench scientists, who can easily navigate and find all mouse related resources in one place, and bioinformaticians, who will be provided with interoperable resources containing data which can be mined and integrated. Database URL: http://bioit.fleming.gr/mrb PMID:20627861

  18. Genome Statute and Legislation Database

    MedlinePlus

    ... topic, visit the National Society of Genetic Counselors . Search the database: Content Type: And/Or Topic: And/ ... works best. Do not quotes or special characters.) Search Tips You may select one or more from ...

  19. SUPERSITES INTEGRATED RELATIONAL DATABASE (SIRD)

    EPA Science Inventory

    As part of EPA's Particulate Matter (PM) Supersites Program (Program), the University of Maryland designed and developed the Supersites Integrated Relational Database (SIRD). Measurement data in SIRD include comprehensive air quality data from the 7 Supersite program locations f...

  20. LDEF meteoroid and debris database

    NASA Technical Reports Server (NTRS)

    Dardano, C. B.; See, Thomas H.; Zolensky, Michael E.

    1994-01-01

    The Long Duration Exposure Facility (LDEF) Meteoroid and Debris Special Investigation Group (M&D SIG) database is maintained at the Johnson Space Center (JSC), Houston, Texas, and consists of five data tables containing information about individual features, digitized images of selected features, and LDEF hardware (i.e., approximately 950 samples) archived at JSC. About 4000 penetrations (greater than 300 micron in diameter) and craters (greater than 500 micron in diameter) were identified and photodocumented during the disassembly of LDEF at the Kennedy Space Center (KSC), while an additional 4500 or so have subsequently been characterized at JSC. The database also contains some data that have been submitted by various PI's, yet the amount of such data is extremely limited in its extent, and investigators are encouraged to submit any and all M&D-type data to JSC for inclusion within the M&D database. Digitized stereo-image pairs are available for approximately 4500 features through the database.

  1. Household Products Database: Personal Care

    MedlinePlus

    ... Information Database ©2001-2015 by DeLima Associates. All rights reserved. Home | Brands | Manufacturers | Ingredients | Health Effects Copyright , Privacy , Accessibility , Freedom of Information Act U.S. National Library of Medicine , ...

  2. Fun Databases: My Top Ten.

    ERIC Educational Resources Information Center

    O'Leary, Mick

    1992-01-01

    Provides reviews of 10 online databases: Consumer Reports; Public Opinion Online; Encyclopedia of Associations; Official Airline Guide Adventure Atlas and Events Calendar; CENDATA; Hollywood Hotline; Fearless Taster; Soap Opera Summaries; and Human Sexuality. (LRW)

  3. Navy precision optical interferometer database

    NASA Astrophysics Data System (ADS)

    Ryan, K. K.; Jorgensen, A. M.; Hall, T.; Armstrong, J. T.; Hutter, D.; Mozurkewich, D.

    2012-07-01

    The Navy Precision Optical Interferometer (NPOI) has now been recording astronomical observations for the better part of two decades. During that time period hundreds of thousands of observations have been obtained, with a total data volume of multiple terabytes. Additionally, in the next few years the data rate from the NPOI is expected to increase significantly. To make it easier for NPOI users to search the NPOI observations and to make it easier for them to obtain data, we have constructed a easily accessible and searchable database of observations. The database is based on a MySQL server and uses standard query language (SQL). In this paper we will describe the database table layout and show examples of possible database queries.

  4. Marine and Hydrokinetic Technology Database

    DOE Data Explorer

    DOE’s Marine and Hydrokinetic Technology Database provides up-to-date information on marine and hydrokinetic renewable energy, both in the U.S. and around the world. The database includes wave, tidal, current, and ocean thermal energy, and contains information on the various energy conversion technologies, companies active in the field, and development of projects in the water. Depending on the needs of the user, the database can present a snapshot of projects in a given region, assess the progress of a certain technology type, or provide a comprehensive view of the entire marine and hydrokinetic energy industry. Results are displayed as a list of technologies, companies, or projects. Data can be filtered by a number of criteria, including country/region, technology type, generation capacity, and technology or project stage. The database was updated in 2009 to include ocean thermal energy technologies, companies, and projects.

  5. InterAction Database (IADB)

    Cancer.gov

    The InterAction Database includes demographic and prescription information for more than 500,000 patients in the northern and middle Netherlands and has been integrated with other systems to enhance data collection and analysis.

  6. Small Business Innovations (Integrated Database)

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Because of the diversity of NASA's information systems, it was necessary to develop DAVID as a central database management system. Under a Small Business Innovation Research (SBIR) grant, Ken Wanderman and Associates, Inc. designed software tools enabling scientists to interface with DAVID and commercial database management systems, as well as artificial intelligence programs. The software has been installed at a number of data centers and is commercially available.

  7. World electric power plants database

    SciTech Connect

    2006-06-15

    This global database provides records for 104,000 generating units in over 220 countries. These units include installed and projected facilities, central stations and distributed plants operated by utilities, independent power companies and commercial and self-generators. Each record includes information on: geographic location and operating company; technology, fuel and boiler; generator manufacturers; steam conditions; unit capacity and age; turbine/engine; architect/engineer and constructor; and pollution control equipment. The database is issued quarterly.

  8. The Binary Star Database -- BDB

    NASA Astrophysics Data System (ADS)

    Malkov, O.; Oblak, E.; Debray, B.

    2009-09-01

    The Binary Star Database (http://bdb.obs-besancon.fr) (BDB) provides astronomers with data for binary and multiple stars from all observational categories. We present the current structure of the database and the form and content of the data. We also discuss the implementation issues that arise in integrating heterogeneous data sources, the object identification problems,and our future work to extend the capabilities of BDB.

  9. Electron Inelastic-Mean-Free-Path Database

    National Institute of Standards and Technology Data Gateway

    SRD 71 NIST Electron Inelastic-Mean-Free-Path Database (PC database, no charge)   This database provides values of electron inelastic mean free paths (IMFPs) for use in quantitative surface analyses by AES and XPS.

  10. The new international GLE database

    NASA Astrophysics Data System (ADS)

    Duldig, M. L.; Watts, D. J.

    2001-08-01

    The Australian Antarctic Division has agreed to host the international GLE database. Access to the database is via a world-wide-web interface and initially covers all GLEs since the start of the 22nd solar cycle. Access restriction for recent events is controlled by password protection and these data are available only to those groups contributing data to the database. The restrictions to data will be automatically removed for events older than 2 years, in accordance with the data exchange provisions of the Antarctic Treaty. Use of the data requires acknowledgment of the database as the source of the data and acknowledgment of the specific groups that provided the data used. Furthermore, some groups that provide data to the database have specific acknowledgment requirements or wording. A new submission format has been developed that will allow easier exchange of data, although the old format will be acceptable for some time. Data download options include direct web based download and email. Data may also be viewed as listings or plots with web browsers. Search options have also been incorporated. Development of the database will be ongoing with extension to viewing and delivery options, addition of earlier data and the development of mirror sites. It is expected that two mirror sites, one in North America and one in Europe, will be developed to enable fast access for the whole cosmic ray community.

  11. Rice Glycosyltransferase (GT) Phylogenomic Database

    DOE Data Explorer

    Ronald, Pamela

    The Ronald Laboratory staff at the University of California-Davis has a primary research focus on the genes of the rice plant. They study the role that genetics plays in the way rice plants respond to their environment. They created the Rice GT Database in order to integrate functional genomic information for putative rice Glycosyltransferases (GTs). This database contains information on nearly 800 putative rice GTs (gene models) identified by sequence similarity searches based on the Carbohydrate Active enZymes (CAZy) database. The Rice GT Database provides a platform to display user-selected functional genomic data on a phylogenetic tree. This includes sequence information, mutant line information, expression data, etc. An interactive chromosomal map shows the position of all rice GTs, and links to rice annotation databases are included. The format is intended to "facilitate the comparison of closely related GTs within different families, as well as perform global comparisons between sets of related families." [From http://ricephylogenomics.ucdavis.edu/cellwalls/gt/genInfo.shtml] See also the primary paper discussing this work: Peijian Cao, Laura E. Bartley, Ki-Hong Jung and Pamela C. Ronalda. Construction of a Rice Glycosyltransferase Phylogenomic Database and Identification of Rice-Diverged Glycosyltransferases. Molecular Plant, 2008, 1(5): 858-877.

  12. DMTB: the magnetotactic bacteria database

    NASA Astrophysics Data System (ADS)

    Pan, Y.; Lin, W.

    2012-12-01

    Magnetotactic bacteria (MTB) are of interest in biogeomagnetism, rock magnetism, microbiology, biomineralization, and advanced magnetic materials because of their ability to synthesize highly ordered intracellular nano-sized magnetic minerals, magnetite or greigite. Great strides for MTB studies have been made in the past few decades. More than 600 articles concerning MTB have been published. These rapidly growing data are stimulating cross disciplinary studies in such field as biogeomagnetism. We have compiled the first online database for MTB, i.e., Database of Magnestotactic Bacteria (DMTB, http://database.biomnsl.com). It contains useful information of 16S rRNA gene sequences, oligonucleotides, and magnetic properties of MTB, and corresponding ecological metadata of sampling sites. The 16S rRNA gene sequences are collected from the GenBank database, while all other data are collected from the scientific literature. Rock magnetic properties for both uncultivated and cultivated MTB species are also included. In the DMTB database, data are accessible through four main interfaces: Site Sort, Phylo Sort, Oligonucleotides, and Magnetic Properties. References in each entry serve as links to specific pages within public databases. The online comprehensive DMTB will provide a very useful data resource for researchers from various disciplines, e.g., microbiology, rock magnetism and paleomagnetism, biogeomagnetism, magnetic material sciences and others.

  13. Database Reports Over the Internet

    NASA Technical Reports Server (NTRS)

    Smith, Dean Lance

    2002-01-01

    Most of the summer was spent developing software that would permit existing test report forms to be printed over the web on a printer that is supported by Adobe Acrobat Reader. The data is stored in a DBMS (Data Base Management System). The client asks for the information from the database using an HTML (Hyper Text Markup Language) form in a web browser. JavaScript is used with the forms to assist the user and verify the integrity of the entered data. Queries to a database are made in SQL (Sequential Query Language), a widely supported standard for making queries to databases. Java servlets, programs written in the Java programming language running under the control of network server software, interrogate the database and complete a PDF form template kept in a file. The completed report is sent to the browser requesting the report. Some errors are sent to the browser in an HTML web page, others are reported to the server. Access to the databases was restricted since the data are being transported to new DBMS software that will run on new hardware. However, the SQL queries were made to Microsoft Access, a DBMS that is available on most PCs (Personal Computers). Access does support the SQL commands that were used, and a database was created with Access that contained typical data for the report forms. Some of the problems and features are discussed below.

  14. SPECTRAFACTORY.NET: A DATABASE OF MOLECULAR MODEL SPECTRA

    SciTech Connect

    Cami, J.; Van Malderen, R.; Markwick, A. J. E-mail: Andrew.Markwick@manchester.ac.uk

    2010-04-01

    We present a homogeneous database of synthetic molecular absorption and emission spectra from the optical to mm wavelengths for a large range of temperatures and column densities relevant for various astrophysical purposes, but in particular for the analysis, identification, and first-order analysis of molecular bands in spectroscopic observations. All spectra are calculated in the LTE limit from several molecular line lists, and are presented at various spectral resolving powers corresponding to several specific instrument simulations. The database is available online at http://www.spectrafactory.net, where users can freely browse, search, display, and download the spectra. We describe how additional model spectra can be requested for (automatic) calculation and inclusion. The database already contains over half a million model spectra for 39 molecules (96 different isotopologues) over the wavelength range 350 nm-3 mm ({approx}3-30000 cm{sup -1})

  15. Atomic Data for the CHIANTI Database

    NASA Technical Reports Server (NTRS)

    Bhatia, Anand K.; Landi, E.

    2012-01-01

    The CHIANTI spectral code consists of an atomic database and a suite of computer programs to calculate the optically thin spectrum of astrophysical objects and to carry out spectroscopic plasma diagnostics. The database includes atomic energy levels, wavelengths, radiative transition rates, collisional excitation, ionization and recombination rate coefficients, as well as data to calculate free-free, free-bound and two-photon continuum emission. In recent years, we have been pursuing a program to calculate atomic data for ions whose lines have been observed in astrophysical spectra but have been neglected in the literature, and to provide CHIANTI with all the data necessary to predict line intensities. There are two types of such ions: those for which calculations are available for low-energy configurations but not for high-energy configurations (i.e., C-like, N-like, O-like systems), and ions that have never or only seldom been studied. This poster will summarize the current status of this project and indicate the future activities .

  16. The CHIANTI atomic database: extension to the X-rays

    NASA Astrophysics Data System (ADS)

    del Zanna, G.; et al.

    The CHIANTI atomic database consists of a critically evaluated set of atomic data (energy levels, radiative data, wavelengths, and electron collisional excitation rates) necessary to calculate the emission line spectrum of astrophysical optically-thin plasmas. IN the past few years, CHIANTI has been extensively used in the EUV for calibration and plasma diagnostics. This database has now been extended in the 1 - 50 Å wavelength region, to include all the significant emission lines (Dere et al., 2000). Comparisons of CHIANTI predicted line intensities with high-resolution X-ray solar (SMM/FCS, SOLEX) and stellar (Chandra HETG) spectra are presented here, to provide an assessment of the completeness and reliability of the most recent atomic data.

  17. Molecular Imaging and Contrast Agent Database (MICAD): Evolution and Progress

    PubMed Central

    Chopra, Arvind; Shan, Liang; Eckelman, W. C.; Leung, Kam; Latterner, Martin; Bryant, Stephen H.; Menkens, Anne

    2011-01-01

    The purpose of writing this review is to showcase the Molecular Imaging and Contrast Agent Database (MICAD; www.micad.nlm.nih.gov) to students, researchers and clinical investigators interested in the different aspects of molecular imaging. This database provides freely accessible, current, online scientific information regarding molecular imaging (MI) probes and contrast agents (CA) used for positron emission tomography, single-photon emission computed tomography, magnetic resonance imaging, x-ray/computed tomography, optical imaging and ultrasound imaging. Detailed information on >1000 agents in MICAD is provided in a chapter format and can be accessed through PubMed. Lists containing >4250 unique MI probes and CAs published in peer-reviewed journals and agents approved by the United States Food and Drug Administration (FDA) as well as a CSV file summarizing all chapters in the database can be downloaded from the MICAD homepage. Users can search for agents in MICAD on the basis of imaging modality, source of signal/contrast, agent or target category, preclinical or clinical studies, and text words. Chapters in MICAD describe the chemical characteristics (structures linked to PubChem), the in vitro and in vivo activities and other relevant information regarding an imaging agent. All references in the chapters have links to PubMed. A Supplemental Information Section in each chapter is available to share unpublished information regarding an agent. A Guest Author Program is available to facilitate rapid expansion of the database. Members of the imaging community registered with MICAD periodically receive an e-mail announcement (eAnnouncement) that lists new chapters uploaded to the database. Users of MICAD are encouraged to provide feedback, comments or suggestions for further improvement of the database by writing to the editors at: micad@nlm.nih.gov PMID:21989943

  18. The IPD and IMGT/HLA database: allele variant databases

    PubMed Central

    Robinson, James; Halliwell, Jason A.; Hayhurst, James D.; Flicek, Paul; Parham, Peter; Marsh, Steven G. E.

    2015-01-01

    The Immuno Polymorphism Database (IPD) was developed to provide a centralized system for the study of polymorphism in genes of the immune system. Through the IPD project we have established a central platform for the curation and publication of locus-specific databases involved either directly or related to the function of the Major Histocompatibility Complex in a number of different species. We have collaborated with specialist groups or nomenclature committees that curate the individual sections before they are submitted to IPD for online publication. IPD consists of five core databases, with the IMGT/HLA Database as the primary database. Through the work of the various nomenclature committees, the HLA Informatics Group and in collaboration with the European Bioinformatics Institute we are able to provide public access to this data through the website http://www.ebi.ac.uk/ipd/. The IPD project continues to develop with new tools being added to address scientific developments, such as Next Generation Sequencing, and to address user feedback and requests. Regular updates to the website ensure that new and confirmatory sequences are dispersed to the immunogenetics community, and the wider research and clinical communities. PMID:25414341

  19. Mars global digital dune database: MC-30

    USGS Publications Warehouse

    Hayward, R.K.; Fenton, L.K.; Titus, T.N.; Colaprete, A.; Christensen, P.R.

    2012-01-01

    The Mars Global Digital Dune Database (MGD3) provides data and describes the methodology used in creating the global database of moderate- to large-size dune fields on Mars. The database is being released in a series of U.S. Geological Survey Open-File Reports. The first report (Hayward and others, 2007) included dune fields from lat 65° N. to 65° S. (http://pubs.usgs.gov/of/2007/1158/). The second report (Hayward and others, 2010) included dune fields from lat 60° N. to 90° N. (http://pubs.usgs.gov/of/2010/1170/). This report encompasses ~75,000 km2 of mapped dune fields from lat 60° to 90° S. The dune fields included in this global database were initially located using Mars Odyssey Thermal Emission Imaging System (THEMIS) Infrared (IR) images. In the previous two reports, some dune fields may have been unintentionally excluded for two reasons: (1) incomplete THEMIS IR (daytime) coverage may have caused us to exclude some moderate- to large-size dune fields or (2) resolution of THEMIS IR coverage (100 m/pixel) certainly caused us to exclude smaller dune fields. In this report, mapping is more complete. The Arizona State University THEMIS daytime IR mosaic provided complete IR coverage, and it is unlikely that we missed any large dune fields in the South Pole (SP) region. In addition, the increased availability of higher resolution images resulted in the inclusion of more small (~1 km2) sand dune fields and sand patches. To maintain consistency with the previous releases, we have identified the sand features that would not have been included in earlier releases. While the moderate to large dune fields in MGD3 are likely to constitute the largest compilation of sediment on the planet, we acknowledge that our database excludes numerous small dune fields and some moderate to large dune fields as well. Please note that the absence of mapped dune fields does not mean that dune fields do not exist and is not intended to imply a lack of saltating sand in other areas. Where availability and quality of THEMIS visible (VIS), Mars Orbiter Camera (MOC) narrow angle, Mars Express High Resolution Stereo Camera, or Mars Reconnaissance Orbiter Context Camera and High Resolution Imaging Science Experiment images allowed, we classified dunes and included some dune slipface measurements, which were derived from gross dune morphology and represent the approximate prevailing wind direction at the last time of significant dune modification. It was beyond the scope of this report to look at the detail needed to discern subtle dune modification. It was also beyond the scope of this report to measure all slipfaces. We attempted to include enough slipface measurements to represent the general circulation (as implied by gross dune morphology) and to give a sense of the complex nature of aeolian activity on Mars. The absence of slipface measurements in a given direction should not be taken as evidence that winds in that direction did not occur. When a dune field was located within a crater, the azimuth from crater centroid to dune field centroid was calculated, as another possible indicator of wind direction. Output from a general circulation model is also included. In addition to polygons locating dune fields, the database includes ~700 of the THEMIS VIS and MOC images that were used to build the database.

  20. A database of macromolecular motions.

    PubMed Central

    Gerstein, M; Krebs, W

    1998-01-01

    We describe a database of macromolecular motions meant to be of general use to the structural community. The database, which is accessible on the World Wide Web with an entry point at http://bioinfo.mbb.yale.edu/MolMovDB , attempts to systematize all instances of protein and nucleic acid movement for which there is at least some structural information. At present it contains >120 motions, most of which are of proteins. Protein motions are further classified hierarchically into a limited number of categories, first on the basis of size (distinguishing between fragment, domain and subunit motions) and then on the basis of packing. Our packing classification divides motions into various categories (shear, hinge, other) depending on whether or not they involve sliding over a continuously maintained and tightly packed interface. In addition, the database provides some indication about the evidence behind each motion (i.e. the type of experimental information or whether the motion is inferred based on structural similarity) and attempts to describe many aspects of a motion in terms of a standardized nomenclature (e.g. the maximum rotation, the residue selection of a fixed core, etc.). Currently, we use a standard relational design to implement the database. However, the complexity and heterogeneity of the information kept in the database makes it an ideal application for an object-relational approach, and we are moving it in this direction. Specifically, in terms of storing complex information, the database contains plausible representations for motion pathways, derived from restrained 3D interpolation between known endpoint conformations. These pathways can be viewed in a variety of movie formats, and the database is associated with a server that can automatically generate these movies from submitted coordinates. PMID:9722650

  1. The Chicago Thoracic Oncology Database Consortium: A Multisite Database Initiative

    PubMed Central

    Carey, George B; Tan, Yi-Hung Carol; Bokhary, Ujala; Itkonen, Michelle; Szeto, Kyle; Wallace, James; Campbell, Nicholas; Hensing, Thomas; Salgia, Ravi

    2016-01-01

    Objective: An increasing amount of clinical data is available to biomedical researchers, but specifically designed database and informatics infrastructures are needed to handle this data effectively. Multiple research groups should be able to pool and share this data in an efficient manner. The Chicago Thoracic Oncology Database Consortium (CTODC) was created to standardize data collection and facilitate the pooling and sharing of data at institutions throughout Chicago and across the world. We assessed the CTODC by conducting a proof of principle investigation on lung cancer patients who took erlotinib. This study does not look into epidermal growth factor receptor (EGFR) mutations and tyrosine kinase inhibitors, but rather it discusses the development and utilization of the database involved. Methods:  We have implemented the Thoracic Oncology Program Database Project (TOPDP) Microsoft Access, the Thoracic Oncology Research Program (TORP) Velos, and the TORP REDCap databases for translational research efforts. Standard operating procedures (SOPs) were created to document the construction and proper utilization of these databases. These SOPs have been made available freely to other institutions that have implemented their own databases patterned on these SOPs. Results: A cohort of 373 lung cancer patients who took erlotinib was identified. The EGFR mutation statuses of patients were analyzed. Out of the 70 patients that were tested, 55 had mutations while 15 did not. In terms of overall survival and duration of treatment, the cohort demonstrated that EGFR-mutated patients had a longer duration of erlotinib treatment and longer overall survival compared to their EGFR wild-type counterparts who received erlotinib. Discussion: The investigation successfully yielded data from all institutions of the CTODC. While the investigation identified challenges, such as the difficulty of data transfer and potential duplication of patient data, these issues can be resolved with greater cross-communication between institutions of the consortium. Conclusion: The investigation described herein demonstrates the successful data collection from multiple institutions in the context of a collaborative effort. The data presented here can be utilized as the basis for further collaborative efforts and/or development of larger and more streamlined databases within the consortium. PMID:27092293

  2. EPILEPSIAE - a European epilepsy database.

    PubMed

    Ihle, Matthias; Feldwisch-Drentrup, Hinnerk; Teixeira, César A; Witon, Adrien; Schelter, Björn; Timmer, Jens; Schulze-Bonhage, Andreas

    2012-06-01

    With a worldwide prevalence of about 1%, epilepsy is one of the most common serious brain diseases with profound physical, psychological and, social consequences. Characteristic symptoms are seizures caused by abnormally synchronized neuronal activity that can lead to temporary impairments of motor functions, perception, speech, memory or, consciousness. The possibility to predict the occurrence of epileptic seizures by monitoring the electroencephalographic activity (EEG) is considered one of the most promising options to establish new therapeutic strategies for the considerable fraction of patients with currently insufficiently controlled seizures. Here, a database is presented which is part of an EU-funded project "EPILEPSIAE" aiming at the development of seizure prediction algorithms which can monitor the EEG for seizure precursors. High-quality, long-term continuous EEG data, enriched with clinical metadata, which so far have not been available, are managed in this database as a joint effort of epilepsy centers in Portugal (Coimbra), France (Paris) and Germany (Freiburg). The architecture and the underlying schema are here reported for this database. It was designed for an efficient organization, access and search of the data of 300 epilepsy patients, including high quality long-term EEG recordings, obtained with scalp and intracranial electrodes, as well as derived features and supplementary clinical and imaging data. The organization of this European database will allow for accessibility by a wide spectrum of research groups and may serve as a model for similar databases planned for the future. PMID:20863589

  3. Reference ballistic imaging database performance.

    PubMed

    De Kinder, Jan; Tulleners, Frederic; Thiebaut, Hugues

    2004-03-10

    Ballistic imaging databases allow law enforcement to link recovered cartridge cases to other crime scenes and to firearms. The success of these databases has led many to propose that all firearms in circulation be entered into a reference ballistic image database (RBID). To assess the performance of an RBID, we fired 4200 cartridge cases from 600 9mm Para Sig Sauer model P226 series pistols. Each pistol fired two Remington cartridges, one of which was imaged in the RBID, and five additional cartridges, consisting of Federal, Speer, Winchester, Wolf, and CCI brands. Randomly selected samples from the second series of Remington cartridge cases and from the five additional brands were then correlated against the RBID. Of the 32 cartridges of the same make correlated against the RBID, 72% ranked in the top 10 positions. Likewise, of the 160 cartridges of the five different brands correlated against the database, 21% ranked in the top 10 positions. Generally, the ranking position increased as the size of the RBID increased. We obtained similar results when we expanded the RBID to include firearms with the same class characteristics for breech face marks, firing pin impressions, and extractor marks. The results of our six queries against the RBID indicate that a reference ballistics image database of new guns is currently fraught with too many difficulties to be an effective and efficient law enforcement tool. PMID:15036442

  4. REDIdb: the RNA editing database

    PubMed Central

    Picardi, Ernesto; Regina, Teresa Maria Rosaria; Brennicke, Axel; Quagliariello, Carla

    2007-01-01

    The RNA Editing Database (REDIdb) is an interactive, web-based database created and designed with the aim to allocate RNA editing events such as substitutions, insertions and deletions occurring in a wide range of organisms. The database contains both fully and partially sequenced DNA molecules for which editing information is available either by experimental inspection (in vitro) or by computational detection (in silico). Each record of REDIdb is organized in a specific flat-file containing a description of the main characteristics of the entry, a feature table with the editing events and related details and a sequence zone with both the genomic sequence and the corresponding edited transcript. REDIdb is a relational database in which the browsing and identification of editing sites has been simplified by means of two facilities to either graphically display genomic or cDNA sequences or to show the corresponding alignment. In both cases, all editing sites are highlighted in colour and their relative positions are detailed by mousing over. New editing positions can be directly submitted to REDIdb after a user-specific registration to obtain authorized secure access. This first version of REDIdb database stores 9964 editing events and can be freely queried at . PMID:17175530

  5. National Residential Efficiency Measures Database

    DOE Data Explorer

    The National Residential Efficiency Measures Database is a publicly available, centralized resource of residential building retrofit measures and costs for the U.S. building industry. With support from the U.S. Department of Energy, NREL developed this tool to help users determine the most cost-effective retrofit measures for improving energy efficiency of existing homes. Software developers who require residential retrofit performance and cost data for applications that evaluate residential efficiency measures are the primary audience for this database. In addition, home performance contractors and manufacturers of residential materials and equipment may find this information useful. The database offers the following types of retrofit measures: 1) Appliances, 2) Domestic Hot Water, 3) Enclosure, 4) Heating, Ventilating, and Air Conditioning (HVAC), 5) Lighting, 6) Miscellaneous.

  6. DOE Global Energy Storage Database

    DOE Data Explorer

    The DOE International Energy Storage Database has more than 400 documented energy storage projects from 34 countries around the world. The database provides free, up-to-date information on grid-connected energy storage projects and relevant state and federal policies. More than 50 energy storage technologies are represented worldwide, including multiple battery technologies, compressed air energy storage, flywheels, gravel energy storage, hydrogen energy storage, pumped hydroelectric, superconducting magnetic energy storage, and thermal energy storage. The policy section of the database shows 18 federal and state policies addressing grid-connected energy storage, from rules and regulations to tariffs and other financial incentives. It is funded through DOE’s Sandia National Laboratories, and has been operating since January 2012.

  7. The CATDAT damaging earthquakes database

    NASA Astrophysics Data System (ADS)

    Daniell, J. E.; Khazai, B.; Wenzel, F.; Vervaeck, A.

    2011-08-01

    The global CATDAT damaging earthquakes and secondary effects (tsunami, fire, landslides, liquefaction and fault rupture) database was developed to validate, remove discrepancies, and expand greatly upon existing global databases; and to better understand the trends in vulnerability, exposure, and possible future impacts of such historic earthquakes. Lack of consistency and errors in other earthquake loss databases frequently cited and used in analyses was a major shortcoming in the view of the authors which needed to be improved upon. Over 17 000 sources of information have been utilised, primarily in the last few years, to present data from over 12 200 damaging earthquakes historically, with over 7000 earthquakes since 1900 examined and validated before insertion into the database. Each validated earthquake includes seismological information, building damage, ranges of social losses to account for varying sources (deaths, injuries, homeless, and affected), and economic losses (direct, indirect, aid, and insured). Globally, a slightly increasing trend in economic damage due to earthquakes is not consistent with the greatly increasing exposure. The 1923 Great Kanto (214 billion USD damage; 2011 HNDECI-adjusted dollars) compared to the 2011 Tohoku (>300 billion USD at time of writing), 2008 Sichuan and 1995 Kobe earthquakes show the increasing concern for economic loss in urban areas as the trend should be expected to increase. Many economic and social loss values not reported in existing databases have been collected. Historical GDP (Gross Domestic Product), exchange rate, wage information, population, HDI (Human Development Index), and insurance information have been collected globally to form comparisons. This catalogue is the largest known cross-checked global historic damaging earthquake database and should have far-reaching consequences for earthquake loss estimation, socio-economic analysis, and the global reinsurance field.

  8. Seismic databases of The Caucasus

    NASA Astrophysics Data System (ADS)

    Gunia, I.; Sokhadze, G.; Mikava, D.; Tvaradze, N.; Godoladze, T.

    2012-12-01

    The Caucasus is one of the active segments of the Alpine-Himalayan collision belt. The region needs continues seismic monitoring systems for better understanding of tectonic processes going in the region. Seismic Monitoring Center of Georgia (Ilia State University) is operating the digital seismic network of the country and is also collecting and exchanging data with neighboring countries. The main focus of our study was to create seismic database which is well organized, easily reachable and is convenient for scientists to use. The seismological database includes the information about more than 100 000 earthquakes from the whole Caucasus. We have to mention that it includes data from analog and digital seismic networks. The first analog seismic station in Georgia was installed in 1899 in the Caucasus in Tbilisi city. The number of analog seismic stations was increasing during next decades and in 1980s about 100 analog stations were operated all over the region. From 1992 due to political and economical situation the number of stations has been decreased and in 2002 just two analog equipments was operated. New digital seismic network was developed in Georgia since 2003. The number of digital seismic stations was increasing and in current days there are more than 25 digital stations operating in the country. The database includes the detailed information about all equipments installed on seismic stations. Database is available online. That will make convenient interface for seismic data exchange data between Caucasus neighboring countries. It also makes easier both the seismic data processing and transferring them to the database and decreases the operator's mistakes during the routine work. The database was created using the followings: php, MySql, Javascript, Ajax, GMT, Gmap, Hypoinverse.

  9. NEOBASE: databasing the neocortical microcircuit.

    PubMed

    Muhammad, Asif Jan; Markram, Henry

    2005-01-01

    Mammals adapt to a rapidly changing world because of the sophisticated perceptual and cognitive function enabled by the neocortex. The neocortex, which has expanded to constitute nearly 80% of the human brain seems to have arisen from repeated duplication of a stereotypical template of neurons and synaptic circuits with subtle specializations in different brain regions and species. Determining the design and function of this microcircuitry is therefore of paramount importance to understanding normal and abnormal higher brain function. Recent advances in recording synaptically-coupled neurons has allowed rapid dissection of the neocortical microcircuitry thus yielding a massive amount of quantitative anatomical, electrical and gene expression data on the neurons and the synaptic circuits that connect the neurons. Due to the availability of the above mentioned data, it has now become imperative to database the neurons of the microcircuit and their synaptic connections. The NEOBASE project, aims to archive the neocortical microcircuit data in a manner that facilitates development of advanced data mining applications, statistical and bioinformatics analyses tools, custom microcircuit builders, and visualization and simulation applications. The database architecture is based on ROOT, a software environment that allows the construction of an object oriented database with numerous relational capabilities. The proposed architecture allows construction of a database that closely mimics the architecture of the real microcircuit, which facilitates the interface with virtually any application, allows for data format evolution, and aims for full interoperability with other databases. NEOBASE will provide an important resource and research tool for studying the microcircuit basis of normal and abnormal neocortical function. The database will be available to local as well as remote users using Grid based tools and technologies. PMID:15923726

  10. Federal Register Document Image Database, Volume 1

    National Institute of Standards and Technology Data Gateway

    NIST Federal Register Document Image Database, Volume 1 (PC database for purchase)   NIST has produced a new document image database for evaluating document analysis and recognition technologies and information retrieval systems. NIST Special Database 25 contains page images from the 1994 Federal Register and much more.

  11. Brede tools and federating online neuroinformatics databases.

    PubMed

    Nielsen, Finn rup

    2014-01-01

    As open science neuroinformatics databases the Brede Database and Brede Wiki seek to make distribution and federation of their content as easy and transparent as possible. The databases rely on simple formats and allow other online tools to reuse their content. This paper describes the possible interconnections on different levels between the Brede tools and other databases. PMID:23666785

  12. Building Databases for Education. ERIC Digest.

    ERIC Educational Resources Information Center

    Klausmeier, Jane A.

    This digest provides a brief explanation of what a database is; explains how a database can be used; identifies important factors that should be considered when choosing database management system software; and provides citations to sources for finding reviews and evaluations of database management software. The digest is concerned primarily with…

  13. Database Driven Web Systems for Education.

    ERIC Educational Resources Information Center

    Garrison, Steve; Fenton, Ray

    1999-01-01

    Provides technical information on publishing to the Web. Demonstrates some new applications in database publishing. Discusses the difference between static and database-drive Web pages. Reviews failures and successes of a Web database system. Addresses the question of how to build a database-drive Web site, discussing connectivity software, Web…

  14. Online Petroleum Industry Bibliographic Databases: A Review.

    ERIC Educational Resources Information Center

    Anderson, Margaret B.

    This paper discusses the present status of the bibliographic database industry, reviews the development of online databases of interest to the petroleum industry, and considers future developments in online searching and their effect on libraries and information centers. Three groups of databases are described: (1) databases developed by the…

  15. Online Petroleum Industry Bibliographic Databases: A Review.

    ERIC Educational Resources Information Center

    Anderson, Margaret B.

    This paper discusses the present status of the bibliographic database industry, reviews the development of online databases of interest to the petroleum industry, and considers future developments in online searching and their effect on libraries and information centers. Three groups of databases are described: (1) databases developed by the

  16. Freshwater Biological Traits Database (External Review Draft)

    EPA Science Inventory

    This draft report discusses the development of a database of freshwater biological traits. The database combines several existing traits databases into an online format. The database is also augmented with additional traits that are relevant to detecting climate change-related ef...

  17. WMC Database Evaluation. Case Study Report

    SciTech Connect

    Palounek, Andrea P. T

    2015-10-29

    The WMC Database is ultimately envisioned to hold a collection of experimental data, design information, and information from computational models. This project was a first attempt at using the Database to access experimental data and extract information from it. This evaluation shows that the Database concept is sound and robust, and that the Database, once fully populated, should remain eminently usable for future researchers.

  18. CD-ROM-aided Databases

    NASA Astrophysics Data System (ADS)

    Masuyama, Keiichi

    CD-ROM has rapidly evolved as a new information medium with large capacity, In the U.S. it is predicted that it will become two hundred billion yen market in three years, and thus CD-ROM is strategic target of database industry. Here in Japan the movement toward its commercialization has been active since this year. Shall CD-ROM bussiness ever conquer information market as an on-disk database or electronic publication? Referring to some cases of the applications in the U.S. the author views marketability and the future trend of this new optical disk medium.

  19. Quality control of EUVE databases

    NASA Technical Reports Server (NTRS)

    John, L. M.; Drake, J.

    1992-01-01

    The publicly accessible databases for the Extreme Ultraviolet Explorer include: the EUVE Archive mailserver; the CEA ftp site; the EUVE Guest Observer Mailserver; and the Astronomical Data System node. The EUVE Performance Assurance team is responsible for verifying that these public EUVE databases are working properly, and that the public availability of EUVE data contained therein does not infringe any data rights which may have been assigned. In this poster, we describe the Quality Assurance (QA) procedures we have developed from the approach of QA as a service organization, thus reflecting the overall EUVE philosophy of Quality Assurance integrated into normal operating procedures, rather than imposed as an external, post facto, control mechanism.

  20. Coal quality databases: Practical applications

    SciTech Connect

    Finkelman, R.B.; Gross, P.M.K.

    1999-07-01

    Domestic and worldwide coal use will be influenced by concerns about the effects of coal combustion on the local, regional and global environment. Reliable coal quality data can help decision-makers to better assess risks and determine impacts of coal constituents on technological behavior, economic byproduct recovery, and environmental and human health issues. The US Geological Survey (USGS) maintains an existing coal quality database (COALQUAL) that contains analyses of approximately 14,000 col samples from every major coal-producing basin in the US. For each sample, the database contains results of proximate and ultimate analyses; sulfur form data; and major, minor, and trace element concentrations for approximately 70 elements

  1. Approximate search in image database

    NASA Astrophysics Data System (ADS)

    Ferro, Alfredo; Gallo, Giovanni; Giugno, Rosalba

    1999-12-01

    This paper present a new approach to content based retrieval in image databases. The basic new idea in the proposed technique is to organize the quantized and truncated wavelet coefficient of an image into a suitable tree structure. The tree structure respects the natural hierarchy imposed on the coefficients by the successive resolution levels. Al the trees relative to the images in a database are organized into a trie. This structure helps in the error tolerant retrieval of queries. The result obtained show that this approach is promising provided that a suitable distance function between trees is adopted.

  2. A comparison of biomedical databases.

    PubMed Central

    Mychko-Megrin, A Y

    1991-01-01

    Various published bibliographic and abstract services covering the period 1970-1988 were compared to analyze scope and coverage. A total of 7,281 articles and book titles (1,655 Soviet and 5,626 foreign) were selected on forty-one topics in different medical fields. The titles originated from three different samples but included all Soviet medical literature on the subjects. A distribution of biomedical serials from five databases is given by country, and twelve indices to assess the quality of biomedical databases are suggested. PMID:1884085

  3. Data exploration systems for databases

    NASA Technical Reports Server (NTRS)

    Greene, Richard J.; Hield, Christopher

    1992-01-01

    Data exploration systems apply machine learning techniques, multivariate statistical methods, information theory, and database theory to databases to identify significant relationships among the data and summarize information. The result of applying data exploration systems should be a better understanding of the structure of the data and a perspective of the data enabling an analyst to form hypotheses for interpreting the data. This paper argues that data exploration systems need a minimum amount of domain knowledge to guide both the statistical strategy and the interpretation of the resulting patterns discovered by these systems.

  4. BDB: The Binary Star Database

    NASA Astrophysics Data System (ADS)

    Dluzhnevskaya, O.; Kaygorodov, P.; Kovaleva, D.; Malkov, O.

    2014-05-01

    Description of the Binary star DataBase (BDB, http://bdb.inasan.ru), the world's principal database of binary and multiple systems of all observational types, is presented in the paper. BDB contains data on physical and positional parameters of 100,000 components of 40,000 systems of multiplicity 2 to 20, belonging to various observational types: visual, spectroscopic, eclipsing, etc. Information on these types of binaries is obtained from heterogeneous sources of data - astronomical and. Organization of the information is based on the careful cross-identification of the objects. BDB can be queried by star identifier, coordinates, and other parameters.

  5. Analysis of the diffuse ionized gas database: DIGEDA

    NASA Astrophysics Data System (ADS)

    Flores-Fajardo, N.; Morisset, C.; Binette, L.

    2009-10-01

    Studies of the Diffuse Ionized Gas (DIG) have progressed without providing so far any strict criterion to distinguish DIGs from H II regions. In this work, we compile the emission line measurements of 29 galaxies that are available in the scientific literature, thereby setting up the first DIG database (DIGEDA). Making use of this database, we proceed to analyze the global properties of the DIG using the [NII]λ6583/Hα, [O I]λ6300/Hα, [O III]λ5007/Hβ and [SII]λ6716/Hα lines ratios, including the H α emission measure. This analysis leads us to conclude that the [N II]/Hα ratio provides an objective criterion for distinguishing whether an emission region is a DIG or an H II region, while the EM(Hα) is a useful quantity only when the galaxies are considered individually. Finally, we find that the emission regions of Irr galaxies classified as DIG in the literature appear in fact to be much more similar to H II regions than to the DIGs of spiral galaxies.

  6. Continuously measured annual ammonia emissions from Southern High Plains beef cattle feedyards

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The magnitude of ammonia emissions from beef cattle feedyards varies with season during the year, but studies of continuous measurement of ammonia emissions throughout the year are rare. The quantification of annual ammonia emissions will improve emission factors, provide databases that can be used ...

  7. The New NRL Crystallographic Database

    NASA Astrophysics Data System (ADS)

    Mehl, Michael; Curtarolo, Stefano; Hicks, David; Toher, Cormac; Levy, Ohad; Hart, Gus

    For many years the Naval Research Laboratory maintained an online graphical database of crystal structures for a wide variety of materials. This database has now been redesigned, updated and integrated with the AFLOW framework for high throughput computational materials discovery (http://materials.duke.edu/aflow.html). For each structure we provide an image showing the atomic positions; the primitive vectors of the lattice and the basis vectors of every atom in the unit cell; the space group and Wyckoff positions; Pearson symbols; common names; and Strukturbericht designations, where available. References for each structure are provided, as well as a Crystallographic Information File (CIF). The database currently includes almost 300 entries and will be continuously updated and expanded. It enables easy search of the various structures based on their underlying symmetries, either by Bravais lattice, Pearson symbol, Strukturbericht designation or commonly used prototypes. The talk will describe the features of the database, and highlight its utility for high throughput computational materials design. Work at NRL is funded by a Contract with the Duke University Department of Mechanical Engineering.

  8. The Hidden Dimensions of Databases.

    ERIC Educational Resources Information Center

    Jacso, Peter

    1994-01-01

    Discusses methods of evaluating commercial online databases and provides examples that illustrate their hidden dimensions. Topics addressed include size, including the number of records or the number of titles; the number of years covered; and the frequency of updates. Comparisons of Readers' Guide Abstracts and Magazine Article Summaries are…

  9. Safeguarding Databases Basic Concepts Revisited.

    ERIC Educational Resources Information Center

    Cardinali, Richard

    1995-01-01

    Discusses issues of database security and integrity, including computer crime and vandalism, human error, computer viruses, employee and user access, and personnel policies. Suggests some precautions to minimize system vulnerability such as careful personnel screening, audit systems, passwords, and building and software security systems. (JKP)

  10. CROP GENOME DATABASES -- CRITICAL ISSUES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Crop genome databases, see www.agron.missouri.edu/bioservers.html of the past decade have had designed and implemented (1) models and schema for the genome and related domains; (2) methodologies for input of data by expert biologists and high-throughput projects; and (3) various text, graphical, and...

  11. Technostress: Surviving a Database Crash.

    ERIC Educational Resources Information Center

    Dobb, Linda S.

    1990-01-01

    Discussion of technostress in libraries focuses on a database crash at California Polytechnic State University, San Luis Obispo. Steps taken to restore the data are explained, strategies for handling technological accidents are suggested, the impact on library staff is discussed, and a 10-item annotated bibliography on technostress is provided.…

  12. Database automation of accelerator operation

    SciTech Connect

    Casstevens, B.J.; Ludemann, C.A.

    1982-01-01

    The Oak Ridge Isochronous Cyclotron (ORIC) is a variable energy, multiparticle accelerator that produces beams of energetic heavy ions which are used as probes to study the structure of the atomic nucleus. To accelerate and transmit a particular ion at a specified energy to an experimenter's apparatus, the electrical currents in up to 82 magnetic field producing coils must be established to accuracies of from 0.1 to 0.001 percent. Mechanical elements must also be positioned by means of motors or pneumatic drives. A mathematical model of this complex system provides a good approximation of operating parameters required to produce an ion beam. However, manual tuning of the system must be performed to optimize the beam quality. The database system was implemented as an on-line query and retrieval system running at a priority lower than the cyclotron real-time software. It was designed for matching beams recorded in the database with beams specified for experiments. The database is relational and permits searching on ranges of any subset of the eleven beam categorizing attributes. A beam file selected from the database is transmitted to the cyclotron general control software which handles the automatic slewing of power supply currents and motor positions to the file values, thereby replicating the desired parameters.

  13. POLYGONAL HYDROLOGY COVERAGE AND DATABASE

    EPA Science Inventory

    This coverage and dataset contain the polygonal hydrology for EPA Region 8. This coverage contains ponds, lakes, and linear hydrology that has been re-digitized for small scale mapping projects. The database is limited to just the pseudo items created by ArcInfo and one item use...

  14. Pathway Interaction Database (PID) —

    Cancer.gov

    The National Cancer Institute (NCI) in collaboration with Nature Publishing Group has established the Pathway Interaction Database (PID) in order to provide a highly structured, curated collection of information about known biomolecular interactions and key cellular processes assembled into signaling pathways.

  15. The NASA Fireball Network Database

    NASA Technical Reports Server (NTRS)

    Moser, Danielle E.

    2011-01-01

    The NASA Meteoroid Environment Office (MEO) has been operating an automated video fireball network since late-2008. Since that time, over 1,700 multi-station fireballs have been observed. A database containing orbital data and trajectory information on all these events has recently been compiled and is currently being mined for information. Preliminary results are presented here.

  16. Guide on Logical Database Design.

    ERIC Educational Resources Information Center

    Fong, Elizabeth N.; And Others

    This report discusses an iterative methodology for logical database design (LDD). The methodology includes four phases: local information-flow modeling, global information-flow modeling, conceptual schema design, and external schema modeling. These phases are intended to make maximum use of available information and user expertise, including the…

  17. The CMS Condition Database System

    NASA Astrophysics Data System (ADS)

    Di Guida, S.; Govi, G.; Ojeda, M.; Pfeiffer, A.; Sipos, R.

    2015-12-01

    The Condition Database plays a key role in the CMS computing infrastructure. The complexity of the detector and the variety of the sub-systems involved are setting tight requirements for handling the Conditions. In the last two years the collaboration has put a substantial effort in the re-design of the Condition Database system, with the aim at improving the scalability and the operability for the data taking starting in 2015. The re-design has focused on simplifying the architecture, using the lessons learned during the operation of the Run I data-taking period (20092013). In the new system the relational features of the database schema are mainly exploited to handle the metadata (Tag and Interval of Validity), allowing for a limited and controlled set of queries. The bulk condition data (Payloads) are stored as unstructured binary data, allowing the storage in a single table with a common layout for all of the condition data types. In this paper, we describe the full architecture of the system, including the services implemented for uploading payloads and the tools for browsing the database. Furthermore, the implementation choices for the core software will be discussed.

  18. HOED: Hypermedia Online Educational Database.

    ERIC Educational Resources Information Center

    Duval, E.; Olivie, H.

    This paper presents HOED, a distributed hypermedia client-server system for educational resources. The aim of HOED is to provide a library facility for hyperdocuments that is accessible via the world wide web. Its main application domain is education. The HOED database not only holds the educational resources themselves, but also data describing…

  19. Maize Genetics and Genomics Database

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The 2007 report for MaizeGDB lists the new hires who will focus on curation/outreach and the genome sequence, respectively. Currently all sequence in the database comes from a PlantGDB pipeline and is presented with deep links to external resources such as PlantGDB, Dana Farber, GenBank, the Arizona...

  20. PID: the Pathway Interaction Database

    PubMed Central

    Schaefer, Carl F.; Anthony, Kira; Krupa, Shiva; Buchoff, Jeffrey; Day, Matthew; Hannay, Timo; Buetow, Kenneth H.

    2009-01-01

    The Pathway Interaction Database (PID, http://pid.nci.nih.gov) is a freely available collection of curated and peer-reviewed pathways composed of human molecular signaling and regulatory events and key cellular processes. Created in a collaboration between the US National Cancer Institute and Nature Publishing Group, the database serves as a research tool for the cancer research community and others interested in cellular pathways, such as neuroscientists, developmental biologists and immunologists. PID offers a range of search features to facilitate pathway exploration. Users can browse the predefined set of pathways or create interaction network maps centered on a single molecule or cellular process of interest. In addition, the batch query tool allows users to upload long list(s) of molecules, such as those derived from microarray experiments, and either overlay these molecules onto predefined pathways or visualize the complete molecular connectivity map. Users can also download molecule lists, citation lists and complete database content in extensible markup language (XML) and Biological Pathways Exchange (BioPAX) Level 2 format. The database is updated with new pathway content every month and supplemented by specially commissioned articles on the practical uses of other relevant online tools. PMID:18832364

  1. ppdb: a plant promoter database

    PubMed Central

    Yamamoto, Yoshiharu Y.; Obokata, Junichi

    2008-01-01

    ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter structures, transcription start sites (TSSs) that have been identified from full-length cDNA clones and also a vast amount of TSS tag data. In ppdb, the promoter structures are determined by sets of promoter elements identified by a position-sensitive extraction method called local distribution of short sequences (LDSS). By using this database, the core promoter structure, the presence of regulatory elements and the distribution of TSS clusters can be identified. Although no differentiation of promoter architecture among plant species has been reported, there is some divergence of utilized sequences for promoter elements. Therefore, ppdb is based on species-specific sets of promoter elements, rather than on general motifs for multiple species. Each regulatory sequence is hyperlinked to literary information, a PLACE entry served by a plant cis-element database, and a list of promoters containing the regulatory sequence. PMID:17947329

  2. ppdb: a plant promoter database.

    PubMed

    Yamamoto, Yoshiharu Y; Obokata, Junichi

    2008-01-01

    ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter structures, transcription start sites (TSSs) that have been identified from full-length cDNA clones and also a vast amount of TSS tag data. In ppdb, the promoter structures are determined by sets of promoter elements identified by a position-sensitive extraction method called local distribution of short sequences (LDSS). By using this database, the core promoter structure, the presence of regulatory elements and the distribution of TSS clusters can be identified. Although no differentiation of promoter architecture among plant species has been reported, there is some divergence of utilized sequences for promoter elements. Therefore, ppdb is based on species-specific sets of promoter elements, rather than on general motifs for multiple species. Each regulatory sequence is hyperlinked to literary information, a PLACE entry served by a plant cis-element database, and a list of promoters containing the regulatory sequence. PMID:17947329

  3. Interactive bibliographical database on color

    NASA Astrophysics Data System (ADS)

    Caivano, Jose L.

    2002-06-01

    The paper describes the methodology and results of a project under development, aimed at the elaboration of an interactive bibliographical database on color in all fields of application: philosophy, psychology, semiotics, education, anthropology, physical and natural sciences, biology, medicine, technology, industry, architecture and design, arts, linguistics, geography, history. The project is initially based upon an already developed bibliography, published in different journals, updated in various opportunities, and now available at the Internet, with more than 2,000 entries. The interactive database will amplify that bibliography, incorporating hyperlinks and contents (indexes, abstracts, keywords, introductions, or eventually the complete document), and devising mechanisms for information retrieval. The sources to be included are: books, doctoral dissertations, multimedia publications, reference works. The main arrangement will be chronological, but the design of the database will allow rearrangements or selections by different fields: subject, Decimal Classification System, author, language, country, publisher, etc. A further project is to develop another database, including color-specialized journals or newsletters, and articles on color published in international journals, arranged in this case by journal name and date of publication, but allowing also rearrangements or selections by author, subject and keywords.

  4. Database Transformations for Biological Applications

    SciTech Connect

    Overton, C.; Davidson, S. B.; Buneman, P.; Tannen, V.

    2001-04-11

    The goal of this project was to develop tools to facilitate data transformations between heterogeneous data sources found throughout biomedical applications. Such transformations are necessary when sharing data between different groups working on related problems as well as when querying data spread over different databases, files and software analysis packages.

  5. REFEREE: BIBLIOGRAPHIC DATABASE MANAGER, DOCUMENTATION

    EPA Science Inventory

    The publication is the user's manual for 3.xx releases of REFEREE, a general-purpose bibliographic database management program for IBM-compatible microcomputers. The REFEREE software also is available from NTIS. The manual has two main sections--Quick Tour and References Guide--a...

  6. Constructing Databases--Professional Issues.

    ERIC Educational Resources Information Center

    Moulton, Lynda W.

    1987-01-01

    Outlines the process involved in selecting or developing software for building a machine-readable database and the special librarian's role in that process. The following steps are identified: (1) needs assessment; (2) project cost and justification; (3) software selection; (4) implementation; and (5) startup and maintenance. Twelve references are…

  7. Mercury Emissions

    EPA Science Inventory

    This indicator presents nationwide mercury emissions data for 1990 to 1993, 2002, and 2005. This information improves understanding of how mercury emissions, which over time eventually deposit on land and water and cause mercury to accumulate in the food web, have changed in r...

  8. Open access intrapartum CTG database

    PubMed Central

    2014-01-01

    Background Cardiotocography (CTG) is a monitoring of fetal heart rate and uterine contractions. Since 1960 it is routinely used by obstetricians to assess fetal well-being. Many attempts to introduce methods of automatic signal processing and evaluation have appeared during the last 20 years, however still no significant progress similar to that in the domain of adult heart rate variability, where open access databases are available (e.g. MIT-BIH), is visible. Based on a thorough review of the relevant publications, presented in this paper, the shortcomings of the current state are obvious. A lack of common ground for clinicians and technicians in the field hinders clinically usable progress. Our open access database of digital intrapartum cardiotocographic recordings aims to change that. Description The intrapartum CTG database consists in total of 552 intrapartum recordings, which were acquired between April 2010 and August 2012 at the obstetrics ward of the University Hospital in Brno, Czech Republic. All recordings were stored in electronic form in the OB TraceVue®;system. The recordings were selected from 9164 intrapartum recordings with clinical as well as technical considerations in mind. All recordings are at most 90 minutes long and start a maximum of 90 minutes before delivery. The time relation of CTG to delivery is known as well as the length of the second stage of labor which does not exceed 30 minutes. The majority of recordings (all but 46 cesarean sections) is – on purpose – from vaginal deliveries. All recordings have available biochemical markers as well as some more general clinical features. Full description of the database and reasoning behind selection of the parameters is presented in the paper. Conclusion A new open-access CTG database is introduced which should give the research community common ground for comparison of results on reasonably large database. We anticipate that after reading the paper, the reader will understand the context of the field from clinical and technical perspectives which will enable him/her to use the database and also understand its limitations. PMID:24418387

  9. Toward An Unstructured Mesh Database

    NASA Astrophysics Data System (ADS)

    Rezaei Mahdiraji, Alireza; Baumann, Peter Peter

    2014-05-01

    Unstructured meshes are used in several application domains such as earth sciences (e.g., seismology), medicine, oceanography, cli- mate modeling, GIS as approximate representations of physical objects. Meshes subdivide a domain into smaller geometric elements (called cells) which are glued together by incidence relationships. The subdivision of a domain allows computational manipulation of complicated physical structures. For instance, seismologists model earthquakes using elastic wave propagation solvers on hexahedral meshes. The hexahedral con- tains several hundred millions of grid points and millions of hexahedral cells. Each vertex node in the hexahedrals stores a multitude of data fields. To run simulation on such meshes, one needs to iterate over all the cells, iterate over incident cells to a given cell, retrieve coordinates of cells, assign data values to cells, etc. Although meshes are used in many application domains, to the best of our knowledge there is no database vendor that support unstructured mesh features. Currently, the main tool for querying and manipulating unstructured meshes are mesh libraries, e.g., CGAL and GRAL. Mesh li- braries are dedicated libraries which includes mesh algorithms and can be run on mesh representations. The libraries do not scale with dataset size, do not have declarative query language, and need deep C++ knowledge for query implementations. Furthermore, due to high coupling between the implementations and input file structure, the implementations are less reusable and costly to maintain. A dedicated mesh database offers the following advantages: 1) declarative querying, 2) ease of maintenance, 3) hiding mesh storage structure from applications, and 4) transparent query optimization. To design a mesh database, the first challenge is to define a suitable generic data model for unstructured meshes. We proposed ImG-Complexes data model as a generic topological mesh data model which extends incidence graph model to multi-incidence relationships. We instrument ImG model with sets of optional and application-specific constraints which can be used to check validity of meshes for a specific class of object such as manifold, pseudo-manifold, and simplicial manifold. We conducted experiments to measure the performance of the graph database solution in processing mesh queries and compare it with GrAL mesh library and PostgreSQL database on synthetic and real mesh datasets. The experiments show that each system perform well on specific types of mesh queries, e.g., graph databases perform well on global path-intensive queries. In the future, we investigate database operations for the ImG model and design a mesh query language.

  10. The CARLSBAD Database: A Confederated Database of Chemical Bioactivities

    PubMed Central

    Mathias, Stephen L.; Hines-Kay, Jarrett; Yang, Jeremy J.; Zahoransky-Kohalmi, Gergely; Bologa, Cristian G.; Ursu, Oleg; Oprea, Tudor I.

    2013-01-01

    Many bioactivity databases offer information regarding the biological activity of small molecules on protein targets. Information in these databases is often hard to resolve with certainty because of subsetting different data in a variety of formats; use of different bioactivity metrics; use of different identifiers for chemicals and proteins; and having to access different query interfaces, respectively. Given the multitude of data sources, interfaces and standards, it is challenging to gather relevant facts and make appropriate connections and decisions regarding chemical–protein associations. The CARLSBAD database has been developed as an integrated resource, focused on high-quality subsets from several bioactivity databases, which are aggregated and presented in a uniform manner, suitable for the study of the relationships between small molecules and targets. In contrast to data collection resources, CARLSBAD provides a single normalized activity value of a given type for each unique chemical–protein target pair. Two types of scaffold perception methods have been implemented and are available for datamining: HierS (hierarchical scaffolds) and MCES (maximum common edge subgraph). The 2012 release of CARLSBAD contains 439 985 unique chemical structures, mapped onto 1,420 889 unique bioactivities, and annotated with 277 140 HierS scaffolds and 54 135 MCES chemical patterns, respectively. Of the 890 323 unique structure–target pairs curated in CARLSBAD, 13.95% are aggregated from multiple structure–target values: 94 975 are aggregated from two bioactivities, 14 544 from three, 7 930 from four and 2214 have five bioactivities, respectively. CARLSBAD captures bioactivities and tags for 1435 unique chemical structures of active pharmaceutical ingredients (i.e. ‘drugs’). CARLSBAD processing resulted in a net 17.3% data reduction for chemicals, 34.3% reduction for bioactivities, 23% reduction for HierS and 25% reduction for MCES, respectively. The CARLSBAD database supports a knowledge mining system that provides non-specialists with novel integrative ways of exploring chemical biology space to facilitate knowledge mining in drug discovery and repurposing. Database URL: http://carlsbad.health.unm.edu/carlsbad/. PMID:23794735

  11. The EXOSAT database and archive

    NASA Technical Reports Server (NTRS)

    Reynolds, A. P.; Parmar, A. N.

    1992-01-01

    The EXOSAT database provides on-line access to the results and data products (spectra, images, and lightcurves) from the EXOSAT mission as well as access to data and logs from a number of other missions (such as EINSTEIN, COS-B, ROSAT, and IRAS). In addition, a number of familiar optical, infrared, and x ray catalogs, including the Hubble Space Telescope (HST) guide star catalog are available. The complete database is located at the EXOSAT observatory at ESTEC in the Netherlands and is accessible remotely via a captive account. The database management system was specifically developed to efficiently access the database and to allow the user to perform statistical studies on large samples of astronomical objects as well as to retrieve scientific and bibliographic information on single sources. The system was designed to be mission independent and includes timing, image processing, and spectral analysis packages as well as software to allow the easy transfer of analysis results and products to the user's own institute. The archive at ESTEC comprises a subset of the EXOSAT observations, stored on magnetic tape. Observations of particular interest were copied in compressed format to an optical jukebox, allowing users to retrieve and analyze selected raw data entirely from their terminals. Such analysis may be necessary if the user's needs are not accommodated by the products contained in the database (in terms of time resolution, spectral range, and the finesse of the background subtraction, for instance). Long-term archiving of the full final observation data is taking place at ESRIN in Italy as part of the ESIS program, again using optical media, and ESRIN have now assumed responsibility for distributing the data to the community. Tests showed that raw observational data (typically several tens of megabytes for a single target) can be transferred via the existing networks in reasonable time.

  12. Database interfaces on NASA's heterogeneous distributed database system

    NASA Technical Reports Server (NTRS)

    Huang, S. H. S.

    1986-01-01

    The purpose of the ORACLE interface is to enable the DAVID program to submit queries and transactions to databases running under the ORACLE DBMS. The interface package is made up of several modules. The progress of these modules is described below. The two approaches used in implementing the interface are also discussed. Detailed discussion of the design of the templates is shown and concluding remarks are presented.

  13. The Temperature Analysis of Yohkoh/SXT Data using the CHIANTI Spectral Database

    NASA Astrophysics Data System (ADS)

    Shimojo, M.; Hara, H.; Kano, R.

    2002-01-01

    Since the CHIANTI database for astrophysical emission line spectroscopy was extended to X-ray wavelengths below 50Å recently (Dere et al. 2000), a temperature response of YOHKOH/SXT has been able to calculate using the database. The functions of temperature responses of SXT are very important for plasma diagnostic since we usually derive the electron temperature of coronal plasma using the observed signal counts and the ratio of the temperature responses. In this paper, we present the properties of the SXT temperature responses which are calculated from the CHIANTI database and also compare them with the SXT temperature responses which are calculated using Mewe spectral databases (Mewe, et al., 1985, 1986). We calculated the filter ratios using CHIANTI database and compared them with the filter ratios which are calculated from Mewe database. At the result, it is found that the difference between temperatures which are derived using CHIANTI and Mewe database is about 2 MK around 5 MK, if we use Al and Al12 filters for the plasma diagnostic. The result is the same as Schmelz et al.(1999). In the paper, we also discuss the effect of the CHIANTI spectral databases for previous works which used the filter ratios based on Mewe database.

  14. Wildfire Emission, injection height: Development, Optimization, and Large Scale Impact

    NASA Astrophysics Data System (ADS)

    Paugam, R.; Wooster, M.; Atherton, J.; Beevers, S.; Kitwiroon, N.; Kaiser, J. W.; Remy, S.; Freitas, S. R.

    2013-12-01

    Evaluation of wildfire emissions in global chemistry transport model is still a subject of debate in the atmospheric community, though some inventory like GFAS and GFED are already available. In particular none of those approaches are currently dealing with height induced by buoyant plumes. In this work we aim to set-up a 3-dimensional wildfire emission inventory. Our approach is based on the Fire Radiative Power product (FRP) evaluated at a cluster level coupled with the plume rise model (PRM) originally developed by Saulo Freitas. PRM was developed to take into account effects of atmospheric stability and latent heat in plume updraft. Here, the original version is modified: (i) the input data of convective heat flux and Active Fire area are directly force from FRP data derived from a modified version of the Dozier algorithm applied to the MOD12 product, (ii) and the dynamical core of the plume model is modified with a new entrainment scheme inspired from latest results in shallow convection parametrization. The new parameters introduced are then defined via an optimization procedure based on (i) fire plume characteristics of single fire events extracted from the official MISR plume height project and (ii) atmospheric profile derived from the ECMWF analysis. Calibration of the new version of PRM is made for Europe and North America. For each geographic zone, fire events are selected out of the MISR data set. In particular, it is shown that the only information extracted from Terra overpass is not enough to guaranty that the injection height of the plume is linked to the FRP measured at the same time. The plume is a dynamical system, and a time delay (related to the atmospheric state) is necessary to adjust change in FRP to the plume behaviour. Therefore, multiple overpasses of the same fire from Terra and Aqua are used here to determine fire and plume behaviours and system in a steady state at the time of MISR (central scan of Terra) overpass are selected for the optimization procedure. Results show that in the case of some fire event, the PRM is able to predict the formation of a pyroconvective cloud where observation from Aqua overpass show massive change in plume behaviour. Once PRM is set-up, the parametrization is then run for some dedicated year of the MODIS archive. The conversion form FRP to gas emission is done using the same conversion and emission factors as in GFAS and then gridded on a 0.1 degree mesh. Though no proper data assimilation scheme are used to grid the data (unlike in GFAS), it is shown that the fire model (ie extrapolation of the sparse information from the MODIS overpasses to the diurnal cycle) used to grid the data has an important impact on the daily total mass burnt estimation. The last section of this work presents a sensitivity study on the impact of injection height in wildfire inventory. Using emission with and without injection height, the WRF-CMAQ system is run for a dedicated case in Europe.

  15. An incremental database access method for autonomous interoperable databases

    NASA Technical Reports Server (NTRS)

    Roussopoulos, Nicholas; Sellis, Timos

    1994-01-01

    We investigated a number of design and performance issues of interoperable database management systems (DBMS's). The major results of our investigation were obtained in the areas of client-server database architectures for heterogeneous DBMS's, incremental computation models, buffer management techniques, and query optimization. We finished a prototype of an advanced client-server workstation-based DBMS which allows access to multiple heterogeneous commercial DBMS's. Experiments and simulations were then run to compare its performance with the standard client-server architectures. The focus of this research was on adaptive optimization methods of heterogeneous database systems. Adaptive buffer management accounts for the random and object-oriented access methods for which no known characterization of the access patterns exists. Adaptive query optimization means that value distributions and selectives, which play the most significant role in query plan evaluation, are continuously refined to reflect the actual values as opposed to static ones that are computed off-line. Query feedback is a concept that was first introduced to the literature by our group. We employed query feedback for both adaptive buffer management and for computing value distributions and selectivities. For adaptive buffer management, we use the page faults of prior executions to achieve more 'informed' management decisions. For the estimation of the distributions of the selectivities, we use curve-fitting techniques, such as least squares and splines, for regressing on these values.

  16. Publicly Available Database : Improved Spectral Line Measurements In SDSS DR7 Galaxies

    NASA Astrophysics Data System (ADS)

    Oh, Kyuseok; Sarzi, M.; Schawinski, K.; Yi, S. K.

    2012-01-01

    We present a new database of absorption and emission line measurements based on the Sloan Digital Sky Survey 7th data release for the galaxies within a redshift of 0.2. Our work makes use of the publicly available penalized pixel-fitting(pPXF) and GANDALF codes, aiming to improve the existing measurements for stellar kinematics, the strength of various absorption-line features, and the flux and width of the emissions from different species of ionized gas. The absorption line strengths measured by SDSS pipeline are seriously contaminated by emission fill-in. We effectively separate emission lines from absorption lines. For instance, this work successfully extract [NI] doublet from Mgb and it leads to more realistic result of alpha enhancement on late-type galaxies compared to the previous database. Besides accurately measuring line strengths, the database provides new parameters that are indicative of line strength measurement quality. Users can build a subset of database optimal for their studies using specific cuts in the fitting quality parameters as well as empirical signal-to-noise. Applying these parameters, we found `hidden’ broad-line-region galaxies and they turned out to be Seyfert I nuclei that were not picked up as AGN by SDSS. The database is publicly available at http://gem.yonsei.ac.kr/ossy

  17. Ontology building by dictionary database mining

    NASA Astrophysics Data System (ADS)

    Deliyska, B.; Rozeva, A.; Malamov, D.

    2012-11-01

    The paper examines the problem of building ontologies in automatic and semi-automatic way by means of mining a dictionary database. An overview of data mining tools and methods is presented. On this basis an extended and improved approach is proposed which involves operations for pre-processing the dictionary database, clustering and associating database entries for extracting hierarchical and nonhierarchical relations. The approach is applied on sample dictionary database in the environment of the Rapid Miner mining tool. As a result the dictionary database is complemented to thesaurus database which can be further on easily converted to reusable formal ontology.

  18. Geologic Map Database of Texas

    USGS Publications Warehouse

    Stoeser, Douglas B.; Shock, Nancy; Green, Gregory N.; Dumonceaux, Gayle M.; Heran, William D.

    2005-01-01

    The purpose of this report is to release a digital geologic map database for the State of Texas. This database was compiled for the U.S. Geological Survey (USGS) Minerals Program, National Surveys and Analysis Project, whose goal is a nationwide assemblage of geologic, geochemical, geophysical, and other data. This release makes the geologic data from the Geologic Map of Texas available in digital format. Original clear film positives provided by the Texas Bureau of Economic Geology were photographically enlarged onto Mylar film. These films were scanned, georeferenced, digitized, and attributed by Geologic Data Systems (GDS), Inc., Denver, Colorado. Project oversight and quality control was the responsibility of the U.S. Geological Survey. ESRI ArcInfo coverages, AMLs, and shapefiles are provided.

  19. The MAJORANA Parts Tracking Database

    NASA Astrophysics Data System (ADS)

    Abgrall, N.; Aguayo, E.; Avignone, F. T.; Barabash, A. S.; Bertrand, F. E.; Brudanin, V.; Busch, M.; Byram, D.; Caldwell, A. S.; Chan, Y.-D.; Christofferson, C. D.; Combs, D. C.; Cuesta, C.; Detwiler, J. A.; Doe, P. J.; Efremenko, Yu.; Egorov, V.; Ejiri, H.; Elliott, S. R.; Esterline, J.; Fast, J. E.; Finnerty, P.; Fraenkle, F. M.; Galindo-Uribarri, A.; Giovanetti, G. K.; Goett, J.; Green, M. P.; Gruszko, J.; Guiseppe, V. E.; Gusev, K.; Hallin, A. L.; Hazama, R.; Hegai, A.; Henning, R.; Hoppe, E. W.; Howard, S.; Howe, M. A.; Keeter, K. J.; Kidd, M. F.; Kochetov, O.; Konovalov, S. I.; Kouzes, R. T.; LaFerriere, B. D.; Leon, J. Diaz; Leviner, L. E.; Loach, J. C.; MacMullin, J.; Martin, R. D.; Meijer, S. J.; Mertens, S.; Miller, M. L.; Mizouni, L.; Nomachi, M.; Orrell, J. L.; O`Shaughnessy, C.; Overman, N. R.; Petersburg, R.; Phillips, D. G.; Poon, A. W. P.; Pushkin, K.; Radford, D. C.; Rager, J.; Rielage, K.; Robertson, R. G. H.; Romero-Romero, E.; Ronquest, M. C.; Shanks, B.; Shima, T.; Shirchenko, M.; Snavely, K. J.; Snyder, N.; Soin, A.; Suriano, A. M.; Tedeschi, D.; Thompson, J.; Timkin, V.; Tornow, W.; Trimble, J. E.; Varner, R. L.; Vasilyev, S.; Vetter, K.; Vorren, K.; White, B. R.; Wilkerson, J. F.; Wiseman, C.; Xu, W.; Yakushev, E.; Young, A. R.; Yu, C.-H.; Yumatov, V.; Zhitnikov, I.

    2015-04-01

    The MAJORANA DEMONSTRATOR is an ultra-low background physics experiment searching for the neutrinoless double beta decay of 76Ge. The MAJORANA Parts Tracking Database is used to record the history of components used in the construction of the DEMONSTRATOR. The tracking implementation takes a novel approach based on the schema-free database technology CouchDB. Transportation, storage, and processes undergone by parts such as machining or cleaning are linked to part records. Tracking parts provide a great logistics benefit and an important quality assurance reference during construction. In addition, the location history of parts provides an estimate of their exposure to cosmic radiation. A web application for data entry and a radiation exposure calculator have been developed as tools for achieving the extreme radio-purity required for this rare decay search.

  20. The NMT-5 criticality database

    SciTech Connect

    Cort, B.; Perkins, B.; Cort, G.

    1995-05-01

    The NMT-5 Criticality Database maintains criticality-related data and documentation to ensure the safety of workers handling special nuclear materials at the Plutonium Facility (TA-55) at Los Alamos National Laboratory. The database contains pertinent criticality safety limit information for more than 150 separate locations at which special nuclear materials are handled. Written in 4th Dimension for the Macintosh, it facilitates the production of signs for posting at these areas, tracks the history of postings and related authorizing documentation, and generates in Microsoft Word a current, comprehensive representation of all signs and supporting documentation, such as standard operating procedures and signature approvals. It facilitates the auditing process and is crucial to full and effective compliance with Department of Energy regulations. It has been recommended for installation throughout the Nuclear Materials Technology Division at Los Alamos.

  1. The National Land Cover Database

    USGS Publications Warehouse

    Homer, Collin H.; Fry, Joyce A.; Barnes, Christopher A.

    2012-01-01

    The National Land Cover Database (NLCD) serves as the definitive Landsat-based, 30-meter resolution, land cover database for the Nation. NLCD provides spatial reference and descriptive data for characteristics of the land surface such as thematic class (for example, urban, agriculture, and forest), percent impervious surface, and percent tree canopy cover. NLCD supports a wide variety of Federal, State, local, and nongovernmental applications that seek to assess ecosystem status and health, understand the spatial patterns of biodiversity, predict effects of climate change, and develop land management policy. NLCD products are created by the Multi-Resolution Land Characteristics (MRLC) Consortium, a partnership of Federal agencies led by the U.S. Geological Survey. All NLCD data products are available for download at no charge to the public from the MRLC Web site: http://www.mrlc.gov.

  2. Spectroscopic Databases for Astronomical Applications

    NASA Astrophysics Data System (ADS)

    Brown, L. R.

    2011-05-01

    Astronomers detect new species (atoms, molecules, ions, radicals present in gas, liquid and solid phase) and determine their abundances, temperatures, pressures, velocities etc. through spectroscopic remote sensing. Nearly every physical phenomenon that in uences the radiative transfer of an astronomical body can be detected and quantified using specific spectral features, provided sufficient spectroscopic knowledge is available. Collections of spectroscopic information are formed and then revised as new objectives and techniques evolve. The resulting spectroscopic databases should be complete, accurate and organized in convenient forms. Much is accessible for far- and mid-IR applications, but the available compilations are often deficient at shorter wavelengths. In this presentation, the current status of these molecular spectroscopic databases will be reviewed.

  3. Aero/fluids database system

    NASA Technical Reports Server (NTRS)

    Reardon, John E.; Violett, Duane L., Jr.

    1991-01-01

    The AFAS Database System was developed to provide the basic structure of a comprehensive database system for the Marshall Space Flight Center (MSFC) Structures and Dynamics Laboratory Aerophysics Division. The system is intended to handle all of the Aerophysics Division Test Facilities as well as data from other sources. The system was written for the DEC VAX family of computers in FORTRAN-77 and utilizes the VMS indexed file system and screen management routines. Various aspects of the system are covered, including a description of the user interface, lists of all code structure elements, descriptions of the file structures, a description of the security system operation, a detailed description of the data retrieval tasks, a description of the session log, and a description of the archival system.

  4. Stockpile Dismantlement Database Training Materials

    SciTech Connect

    Not Available

    1993-11-01

    This document, the Stockpile Dismantlement Database (SDDB) training materials is designed to familiarize the user with the SDDB windowing system and the data entry steps for Component Characterization for Disposition. The foundation of information required for every part is depicted by using numbered graphic and text steps. The individual entering data is lead step by step through generic and specific examples. These training materials are intended to be supplements to individual on-the-job training.

  5. LSD: Large Survey Database framework

    NASA Astrophysics Data System (ADS)

    Juric, Mario

    2012-09-01

    The Large Survey Database (LSD) is a Python framework and DBMS for distributed storage, cross-matching and querying of large survey catalogs (>10^9 rows, >1 TB). The primary driver behind its development is the analysis of Pan-STARRS PS1 data. It is specifically optimized for fast queries and parallel sweeps of positionally and temporally indexed datasets. It transparently scales to more than >10^2 nodes, and can be made to function in "shared nothing" architectures.

  6. GOLD: The Genomes Online Database

    DOE Data Explorer

    Kyrpides, Nikos; Liolios, Dinos; Chen, Amy; Tavernarakis, Nektarios; Hugenholtz, Philip; Markowitz, Victor; Bernal, Alex

    Since its inception in 1997, GOLD has continuously monitored genome sequencing projects worldwide and has provided the community with a unique centralized resource that integrates diverse information related to Archaea, Bacteria, Eukaryotic and more recently Metagenomic sequencing projects. As of September 2007, GOLD recorded 639 completed genome projects. These projects have their complete sequence deposited into the public archival sequence databases such as GenBank EMBL,and DDBJ. From the total of 639 complete and published genome projects as of 9/2007, 527 were bacterial, 47 were archaeal and 65 were eukaryotic. In addition to the complete projects, there were 2158 ongoing sequencing projects. 1328 of those were bacterial, 59 archaeal and 771 eukaryotic projects. Two types of metadata are provided by GOLD: (i) project metadata and (ii) organism/environment metadata. GOLD CARD pages for every project are available from the link of every GOLD_STAMP ID. The information in every one of these pages is organized into three tables: (a) Organism information, (b) Genome project information and (c) External links. [The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata, Konstantinos Liolios, Konstantinos Mavromatis, Nektarios Tavernarakis and Nikos C. Kyrpides, Nucleic Acids Research Advance Access published online on November 2, 2007, Nucleic Acids Research, doi:10.1093/nar/gkm884]

    The basic tables in the GOLD database that can be browsed or searched include the following information:

    • Gold Stamp ID
    • Organism name
    • Domain
    • Links to information sources
    • Size and link to a map, when available
    • Chromosome number, Plas number, and GC content
    • A link for downloading the actual genome data
    • Institution that did the sequencing
    • Funding source
    • Database where information resides
    • Publication status and information

    (Specialized Interface)

  7. Central Asia Active Fault Database

    NASA Astrophysics Data System (ADS)

    Mohadjer, Solmaz; Ehlers, Todd A.; Kakar, Najibullah

    2014-05-01

    The ongoing collision of the Indian subcontinent with Asia controls active tectonics and seismicity in Central Asia. This motion is accommodated by faults that have historically caused devastating earthquakes and continue to pose serious threats to the population at risk. Despite international and regional efforts to assess seismic hazards in Central Asia, little attention has been given to development of a comprehensive database for active faults in the region. To address this issue and to better understand the distribution and level of seismic hazard in Central Asia, we are developing a publically available database for active faults of Central Asia (including but not limited to Afghanistan, Tajikistan, Kyrgyzstan, northern Pakistan and western China) using ArcGIS. The database is designed to allow users to store, map and query important fault parameters such as fault location, displacement history, rate of movement, and other data relevant to seismic hazard studies including fault trench locations, geochronology constraints, and seismic studies. Data sources integrated into the database include previously published maps and scientific investigations as well as strain rate measurements and historic and recent seismicity. In addition, high resolution Quickbird, Spot, and Aster imagery are used for selected features to locate and measure offset of landforms associated with Quaternary faulting. These features are individually digitized and linked to attribute tables that provide a description for each feature. Preliminary observations include inconsistent and sometimes inaccurate information for faults documented in different studies. For example, the Darvaz-Karakul fault which roughly defines the western margin of the Pamir, has been mapped with differences in location of up to 12 kilometers. The sense of motion for this fault ranges from unknown to thrust and strike-slip in three different studies despite documented left-lateral displacements of Holocene and late Pleistocene landforms observed near the fault trace.

  8. Common hyperspectral image database design

    NASA Astrophysics Data System (ADS)

    Tian, Lixun; Liao, Ningfang; Chai, Ali

    2009-11-01

    This paper is to introduce Common hyperspectral image database with a demand-oriented Database design method (CHIDB), which comprehensively set ground-based spectra, standardized hyperspectral cube, spectral analysis together to meet some applications. The paper presents an integrated approach to retrieving spectral and spatial patterns from remotely sensed imagery using state-of-the-art data mining and advanced database technologies, some data mining ideas and functions were associated into CHIDB to make it more suitable to serve in agriculture, geological and environmental areas. A broad range of data from multiple regions of the electromagnetic spectrum is supported, including ultraviolet, visible, near-infrared, thermal infrared, and fluorescence. CHIDB is based on dotnet framework and designed by MVC architecture including five main functional modules: Data importer/exporter, Image/spectrum Viewer, Data Processor, Parameter Extractor, and On-line Analyzer. The original data were all stored in SQL server2008 for efficient search, query and update, and some advance Spectral image data Processing technology are used such as Parallel processing in C#; Finally an application case is presented in agricultural disease detecting area.

  9. Development a GIS Snowstorm Database

    NASA Astrophysics Data System (ADS)

    Squires, M. F.

    2010-12-01

    This paper describes the development of a GIS Snowstorm Database (GSDB) at NOAA’s National Climatic Data Center. The snowstorm database is a collection of GIS layers and tabular information for 471 snowstorms between 1900 and 2010. Each snowstorm has undergone automated and manual quality control. The beginning and ending date of each snowstorm is specified. The original purpose of this data was to serve as input for NCDC’s new Regional Snowfall Impact Scale (ReSIS). However, this data is being preserved and used to investigate the impacts of snowstorms on society. GSDB is used to summarize the impact of snowstorms on transportation (interstates) and various classes of facilities (roads, schools, hospitals, etc.). GSDB can also be linked to other sources of impacts such as insurance loss information and Storm Data. Thus the snowstorm database is suited for many different types of users including the general public, decision makers, and researchers. This paper summarizes quality control issues associated with using snowfall data, methods used to identify the starting and ending dates of a storm, and examples of the tables that combine snowfall and societal data.

  10. IDBD: Infectious Disease Biomarker Database

    PubMed Central

    Yang, In Seok; Ryu, Chunsun; Cho, Ki Joon; Kim, Jin Kwang; Ong, Swee Hoe; Mitchell, Wayne P.; Kim, Bong Su; Kim, Kyung Hyun

    2008-01-01

    Biomarkers enable early diagnosis, guide molecularly targeted therapy and monitor the activity and therapeutic responses across a variety of diseases. Despite intensified interest and research, however, the overall rate of development of novel biomarkers has been falling. Moreover, no solution is yet available that efficiently retrieves and processes biomarker information pertaining to infectious diseases. Infectious Disease Biomarker Database (IDBD) is one of the first efforts to build an easily accessible and comprehensive literature-derived database covering known infectious disease biomarkers. IDBD is a community annotation database, utilizing collaborative Web 2.0 features, providing a convenient user interface to input and revise data online. It allows users to link infectious diseases or pathogens to protein, gene or carbohydrate biomarkers through the use of search tools. It supports various types of data searches and application tools to analyze sequence and structure features of potential and validated biomarkers. Currently, IDBD integrates 611 biomarkers for 66 infectious diseases and 70 pathogens. It is publicly accessible at http://biomarker.cdc.go.kr and http://biomarker.korea.ac.kr. PMID:17982173

  11. ERGDB: Estrogen Responsive Genes Database.

    PubMed

    Tang, Suisheng; Han, Hao; Bajic, Vladimir B

    2004-01-01

    ERGDB is an integrated knowledge database dedicated to genes responsive to estrogen. Genes included in ERGDB are those whose expression levels are experimentally proven to be either up-regulated or down-regulated by estrogen. Genes included are identified based on publications from the PubMed database and each record has been manually examined, evaluated and selected for inclusion by biologists. ERGDB aims to be a unified gateway to store, search, retrieve and update information about estrogen responsive genes. Each record contains links to relevant databases, such as GenBank, LocusLink, Refseq, PubMed and ATCC. The unique feature of ERGDB is that it contains information on the dependence of gene reactions on experimental conditions. In addition to basic information about the genes, information for each record includes gene functional description, experimental methods used, tissue or cell type, gene reaction, estrogen exposure time and the summary of putative estrogen response elements if the gene's promoter sequence was available. Through a web interface at http://sdmc.i2r.a-star.edu.sg/ergdb/ cgi-bin/explore.pl users can either browse or query ERGDB. Access is free for academic and non-profit users. PMID:14681475

  12. The Chordate Proteome History Database

    PubMed Central

    Levasseur, Anthony; Paganini, Julien; Dainat, Jacques; Thompson, Julie D.; Poch, Olivier; Pontarotti, Pierre; Gouret, Philippe

    2012-01-01

    The chordate proteome history database (http://ioda.univ-provence.fr) comprises some 20,000 evolutionary analyses of proteins from chordate species. Our main objective was to characterize and study the evolutionary histories of the chordate proteome, and in particular to detect genomic events and automatic functional searches. Firstly, phylogenetic analyses based on high quality multiple sequence alignments and a robust phylogenetic pipeline were performed for the whole protein and for each individual domain. Novel approaches were developed to identify orthologs/paralogs, and predict gene duplication/gain/loss events and the occurrence of new protein architectures (domain gains, losses and shuffling). These important genetic events were localized on the phylogenetic trees and on the genomic sequence. Secondly, the phylogenetic trees were enhanced by the creation of phylogroups, whereby groups of orthologous sequences created using OrthoMCL were corrected based on the phylogenetic trees; gene family size and gene gain/loss in a given lineage could be deduced from the phylogroups. For each ortholog group obtained from the phylogenetic or the phylogroup analysis, functional information and expression data can be retrieved. Database searches can be performed easily using biological objects: protein identifier, keyword or domain, but can also be based on events, eg, domain exchange events can be retrieved. To our knowledge, this is the first database that links group clustering, phylogeny and automatic functional searches along with the detection of important events occurring during genome evolution, such as the appearance of a new domain architecture. PMID:22904610

  13. MINT: a Molecular INTeraction database.

    PubMed

    Zanzoni, Andreas; Montecchi-Palazzi, Luisa; Quondam, Michele; Ausiello, Gabriele; Helmer-Citterich, Manuela; Cesareni, Gianni

    2002-02-20

    Protein interaction databases represent unique tools to store, in a computer readable form, the protein interaction information disseminated in the scientific literature. Well organized and easily accessible databases permit the easy retrieval and analysis of large interaction data sets. Here we present MINT, a database (http://cbm.bio.uniroma2.it/mint/index.html) designed to store data on functional interactions between proteins. Beyond cataloguing binary complexes, MINT was conceived to store other types of functional interactions, including enzymatic modifications of one of the partners. Release 1.0 of MINT focuses on experimentally verified protein-protein interactions. Both direct and indirect relationships are considered. Furthermore, MINT aims at being exhaustive in the description of the interaction and, whenever available, information about kinetic and binding constants and about the domains participating in the interaction is included in the entry. MINT consists of entries extracted from the scientific literature by expert curators assisted by 'MINT Assistant', a software that targets abstracts containing interaction information and presents them to the curator in a user-friendly format. The interaction data can be easily extracted and viewed graphically through 'MINT Viewer'. Presently MINT contains 4568 interactions, 782 of which are indirect or genetic interactions. PMID:11911893

  14. The IMGT/HLA database.

    PubMed

    Robinson, James; Marsh, Steven G E

    2007-01-01

    The human leukocyte antigen (HLA) complex is located within the 6p21.3 region on the short arm of human chromosome 6 and contains more than 220 genes of diverse function. Many of the genes encode proteins of the immune system and include many highly polymorphic HLA genes. The naming of new HLA genes and allele sequences and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. The IMGT/HLA Database acts as the repository for these sequences and is recognized as the primary source of up-to-date and accurate HLA sequences. The IMGT/HLA website provides a number of tools for accessing the database: these include allele reports, sequence alignments, and sequence similarity searches. The website is updated every 3 months with all the new and confirmatory sequences submitted to the WHO Nomenclature Committee. Submission of HLA sequences to the committee is possible through the tools provided by the IMGT/HLA Database. PMID:18449991

  15. Integrated Primary Care Information Database (IPCI)

    Cancer.gov

    The Integrated Primary Care Information Database is a longitudinal observational database that was created specifically for pharmacoepidemiological and pharmacoeconomic studies, inlcuding data from computer-based patient records supplied voluntarily by general practitioners.

  16. Diet History Questionnaire: Database Revision History

    Cancer.gov

    The following details all additions and revisions made to the DHQ nutrient and food database. This revision history is provided as a reference for investigators who may have performed analyses with a previous release of the database.

  17. Reef Ecosystem Services and Decision Support Database

    EPA Science Inventory

    This scientific and management information database utilizes systems thinking to describe the linkages between decisions, human activities, and provisioning of reef ecosystem goods and services. This database provides: (1) Hierarchy of related topics - Click on topics to navigat...

  18. Investigating Evolutionary Questions Using Online Molecular Databases.

    ERIC Educational Resources Information Center

    Puterbaugh, Mary N.; Burleigh, J. Gordon

    2001-01-01

    Recommends using online molecular databases as teaching tools to illustrate evolutionary questions and concepts while introducing students to public molecular databases. Provides activities in which students make molecular comparisons between species. (YDS)

  19. CANCER PREVENTION AND CONTROL (CP) DATABASE

    EPA Science Inventory

    This database focuses on breast, cervical, skin, and colorectal cancer emphasizing the application of early detection and control program activities and risk reduction efforts. The database provides bibliographic citations and abstracts of various types of materials including jou...

  20. Quantum search of a real unstructured database

    NASA Astrophysics Data System (ADS)

    Broda, Bogusław

    2016-02-01

    A simple circuit implementation of the oracle for Grover's quantum search of a real unstructured classical database is proposed. The oracle contains a kind of quantumly accessible classical memory, which stores the database.

  1. Aviation Particle Emissions Workshop

    NASA Technical Reports Server (NTRS)

    Wey, Chowen C. (Editor)

    2004-01-01

    The Aviation Particle Emissions Workshop was held on November 18 19, 2003, in Cleveland, Ohio. It was sponsored by the National Aeronautic and Space Administration (NASA) under the Vehicle Systems Program (VSP) and the Ultra- Efficient Engine Technology (UEET) Project. The objectives were to build a sound foundation for a comprehensive particulate research roadmap and to provide a forum for discussion among U.S. stakeholders and researchers. Presentations included perspectives from the Federal Aviation Administration, the U.S. Environmental Protection Agency, NASA, and United States airports. There were five interactive technical sessions: sampling methodology, measurement methodology, particle modeling, database, inventory and test venue, and air quality. Each group presented technical issues which generated excellent discussion. The five session leads collaborated with their members to present summaries and conclusions to each content area.

  2. [Quality management and participation into clinical database].

    PubMed

    Okubo, Suguru; Miyata, Hiroaki; Tomotaki, Ai; Motomura, Noboru; Murakami, Arata; Ono, Minoru; Iwanaka, Tadashi

    2013-07-01

    Quality management is necessary for establishing useful clinical database in cooperation with healthcare professionals and facilities. The ways of management are 1) progress management of data entry, 2) liaison with database participants (healthcare professionals), and 3) modification of data collection form. In addition, healthcare facilities are supposed to consider ethical issues and information security for joining clinical databases. Database participants should check ethical review boards and consultation service for patients. PMID:23917137

  3. The European Bioinformatics Institute (EBI) databases.

    PubMed Central

    Rodriguez-Tomé, P; Stoehr, P J; Cameron, G N; Flores, T P

    1996-01-01

    The European Bioinformatics Institute (EBI) maintains and distributes the EMBL Nucleotide Sequence database, Europe's primary nucleotide sequence data resource. The EBI also maintains and distributes the SWISS-PROT Protein Sequence database, in collaboration with Amos Bairoch of the University of Geneva. Over fifty additional specialist molecular biology databases, as well as software and documentation of interest to molecular biologists are available. The EBI network services include database searching and sequence similarity searching facilities. PMID:8594602

  4. An Internet enabled impact limiter material database

    SciTech Connect

    Wix, S.; Kanipe, F.; McMurtry, W.

    1998-09-01

    This paper presents a detailed explanation of the construction of an interest enabled database, also known as a database driven web site. The data contained in the internet enabled database are impact limiter material and seal properties. The technique used in constructing the internet enabled database presented in this paper are applicable when information that is changing in content needs to be disseminated to a wide audience.

  5. Implementing security on a prototype hospital database.

    PubMed

    Khair, M; Pangalos, G; Andria, F; Bozios, L

    1997-01-01

    This paper describes the methodology used and the experience gained from the application of a new secure database design approach and database security policy in a real life hospital environment. The applicability of the proposed database security policy in a major Greek general hospital is demonstrated. Moreover, the security and quality assurance of the developed prototype secure database is examined, taking into consideration the results from the study of the user acceptance. PMID:10179532

  6. Electron Effective-Attenuation-Length Database

    National Institute of Standards and Technology Data Gateway

    SRD 82 NIST Electron Effective-Attenuation-Length Database (PC database, no charge)   This database provides values of electron effective attenuation lengths (EALs) in solid elements and compounds at selected electron energies between 50 eV and 2,000 eV. The database was designed mainly to provide EALs (to account for effects of elastic-eletron scattering) for applications in surface analysis by Auger-electron spectroscopy (AES) and X-ray photoelectron spectroscopy (XPS).

  7. Mitigating greenhouse gas emissions: Voluntary reporting

    SciTech Connect

    1997-10-01

    The Voluntary Reporting Program, developed pursuant to Section 1605(b) of the Energy Policy Act of 1992, permits corporations, government agencies, households, and voluntary organizations to report on their emissions of greenhouse gases, and on actions taken that have reduced or avoided emissions or sequestered carbon, to the Energy Information Administration (EIA). This, the second annual report of the Voluntary Reporting Program, describes information provided by the participating organizations on their aggregate emissions and emissions reductions, as well as their emissions reduction or avoidance projects, through 1995. This information has been compiled into a database that includes reports from 142 organizations and descriptions of 967 projects that either reduced greenhouse gas emissions or sequestered carbon. Fifty-one reporters also provided estimates of emissions, and emissions reductions achieved, for their entire organizations. The projects described actions taken to reduce emissions of carbon dioxide from energy production and use; to reduce methane and nitrous oxide emissions from energy use, waste management, and agricultural processes; to reduce emissions of halocarbons, such as CFCs and their replacements; and to increase carbon sequestration.

  8. THz Spectroscopy and Spectroscopic Database for Astrophysics

    NASA Technical Reports Server (NTRS)

    Pearson, John C.; Drouin, Brian J.

    2006-01-01

    Molecule specific astronomical observations rely on precisely determined laboratory molecular data for interpretation. The Herschel Heterodyne Instrument for Far Infrared, a suite of SOFIA instruments, and ALMA are each well placed to expose the limitations of available molecular physics data and spectral line catalogs. Herschel and SOFIA will observe in high spectral resolution over the entire far infrared range. Accurate data to previously unimagined frequencies including infrared ro-vibrational and ro-torsional bands will be required for interpretation of the observations. Planned ALMA observations with a very small beam will reveal weaker emission features requiring accurate knowledge of higher quantum numbers and additional vibrational states. Historically, laboratory spectroscopy has been at the front of submillimeter technology development, but now astronomical receivers have an enormous capability advantage. Additionally, rotational spectroscopy is a relatively mature field attracting little interest from students and funding agencies. Molecular database maintenance is tedious and difficult to justify as research. This severely limits funding opportunities even though data bases require the same level of expertise as research. We report the application of some relatively new receiver technology into a simple solid state THz spectrometer that has the performance required to collect the laboratory data required by astronomical observations. Further detail on the lack of preparation for upcoming missions by the JPL spectral line catalog is given.

  9. Database Systems. Course Three. Information Systems Curriculum.

    ERIC Educational Resources Information Center

    O'Neil, Sharon Lund; Everett, Donna R.

    This course is the third of seven in the Information Systems curriculum. The purpose of the course is to familiarize students with database management concepts and standard database management software. Databases and their roles, advantages, and limitations are explained. An overview of the course sets forth the condition and performance standard…

  10. CLEAN WATER NEEDS SURVEY (CWNS) DATABASE

    EPA Science Inventory

    Resource Purpose:The CWNS Database is a completely new database system that is currently loaded on a UNIX server at RTP, NC. It is absolutely imperative for the states and territories to have access to the CWNS Database to input their updated CWNS 2000 data into the databa...

  11. Database Support for Research in Public Administration

    ERIC Educational Resources Information Center

    Tucker, James Cory

    2005-01-01

    This study examines the extent to which databases support student and faculty research in the area of public administration. A list of journals in public administration, public policy, political science, public budgeting and finance, and other related areas was compared to the journal content list of six business databases. These databases

  12. Automated database design technology and tools

    NASA Technical Reports Server (NTRS)

    Shen, Stewart N. T.

    1988-01-01

    The Automated Database Design Technology and Tools research project results are summarized in this final report. Comments on the state of the art in various aspects of database design are provided, and recommendations made for further research for SNAP and NAVMASSO future database applications.

  13. Annual Review of Database Developments 1991.

    ERIC Educational Resources Information Center

    Basch, Reva

    1991-01-01

    Review of developments in databases highlights a new emphasis on accessibility. Topics discussed include the internationalization of databases; databases that deal with finance, drugs, and toxic waste; access to public records, both personal and corporate; media online; reducing large files of data to smaller, more manageable files; and…

  14. Full-Text Databases in Medicine.

    ERIC Educational Resources Information Center

    Sievert, MaryEllen C.; And Others

    1995-01-01

    Describes types of full-text databases in medicine; discusses features for searching full-text journal databases available through online vendors; reviews research on full-text databases in medicine; and describes the MEDLINE/Full-Text Research Project at the University of Missouri (Columbia) which investigated precision, recall, and relevancy.…

  15. Selecting Software for a Development Information Database.

    ERIC Educational Resources Information Center

    Geethananda, Hemamalee

    1991-01-01

    Describes software selection criteria considered for use with the bibliographic database of the Development Information Network for South Asia (DEVINSA), which is located in Sri Lanka. Highlights include ease of database creation, database size, input, editing, data validation, inverted files, searching, storing searches, vocabulary control, user…

  16. 6 CFR 37.33 - DMV databases.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 6 Domestic Security 1 2012-01-01 2012-01-01 false DMV databases. 37.33 Section 37.33 Domestic... IDENTIFICATION CARDS Other Requirements § 37.33 DMV databases. (a) States must maintain a State motor vehicle database that contains, at a minimum— (1) All data fields printed on driver's licenses and...

  17. 6 CFR 37.33 - DMV databases.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 6 Domestic Security 1 2014-01-01 2014-01-01 false DMV databases. 37.33 Section 37.33 Domestic... IDENTIFICATION CARDS Other Requirements § 37.33 DMV databases. (a) States must maintain a State motor vehicle database that contains, at a minimum— (1) All data fields printed on driver's licenses and...

  18. Information Literacy Skills: Comparing and Evaluating Databases

    ERIC Educational Resources Information Center

    Grismore, Brian A.

    2012-01-01

    The purpose of this database comparison is to express the importance of teaching information literacy skills and to apply those skills to commonly used Internet-based research tools. This paper includes a comparison and evaluation of three databases (ProQuest, ERIC, and Google Scholar). It includes strengths and weaknesses of each database based…

  19. 6 CFR 37.33 - DMV databases.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 6 Domestic Security 1 2011-01-01 2011-01-01 false DMV databases. 37.33 Section 37.33 Domestic... IDENTIFICATION CARDS Other Requirements § 37.33 DMV databases. (a) States must maintain a State motor vehicle database that contains, at a minimum— (1) All data fields printed on driver's licenses and...

  20. 6 CFR 37.33 - DMV databases.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 6 Domestic Security 1 2013-01-01 2013-01-01 false DMV databases. 37.33 Section 37.33 Domestic... IDENTIFICATION CARDS Other Requirements § 37.33 DMV databases. (a) States must maintain a State motor vehicle database that contains, at a minimum— (1) All data fields printed on driver's licenses and...

  1. 6 CFR 37.33 - DMV databases.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 6 Domestic Security 1 2010-01-01 2010-01-01 false DMV databases. 37.33 Section 37.33 Domestic... IDENTIFICATION CARDS Other Requirements § 37.33 DMV databases. (a) States must maintain a State motor vehicle database that contains, at a minimum— (1) All data fields printed on driver's licenses and...

  2. Conceptual Design of a Prototype LSST Database

    SciTech Connect

    Nikolaev, S; Huber, M E; Cook, K H; Abdulla, G; Brase, J

    2004-10-07

    This document describes a preliminary design for Prototype LSST Database (LSST DB). They identify key components and data structures and provide an expandable conceptual schema for the database. The authors discuss the potential user applications and post-processing algorithm to interact with the database, and give a set of example queries.

  3. Online Search Patterns: NLM CATLINE Database.

    ERIC Educational Resources Information Center

    Tolle, John E.; Hah, Sehchang

    1985-01-01

    Presents analysis of online search patterns within user searching sessions of National Library of Medicine ELHILL system and examines user search patterns on the CATLINE database. Data previously analyzed on MEDLINE database for same period is used to compare the performance parameters of different databases within the same information system.…

  4. [DATABASE FOR DEPOSITARY DEPARTMENT OF MICROORGANISMS].

    PubMed

    Brovarnyk, V; Golovach, T M

    2015-01-01

    The database on microorganism culture depositary is designed with using MS Access 2010. Three major modules, namely general description, administration, storage, compound database kernel. Description of information in these modules is given. Web page of the depositary is developed on the database. PMID:26638488

  5. Citation Help in Databases: Helpful or Harmful?

    ERIC Educational Resources Information Center

    Kessler, Jane; Van Ullen, Mary K.

    2006-01-01

    A review of the help files in several major databases revealed that database vendors have begun including information on citing sources, which has the potential to be very useful to students. Surprisingly, 94% of the citation examples in the databases reviewed had errors. The average number of errors per example was 4.3. The citation help appears…

  6. Development of soybean gene expression database (SGED)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Large volumes of microarray expression data is a challenge for analysis. To address this problem a web-based database, Soybean Expression Database (SGED) was built, using PERL/CGI, C and an ORACLE database management system. SGED contains three components. The Data Mining component serves as a repos...

  7. Enhancing the DNA Patent Database

    SciTech Connect

    Walters, LeRoy B.

    2008-02-18

    Final Report on Award No. DE-FG0201ER63171 Principal Investigator: LeRoy B. Walters February 18, 2008 This project successfully completed its goal of surveying and reporting on the DNA patenting and licensing policies at 30 major U.S. academic institutions. The report of survey results was published in the January 2006 issue of Nature Biotechnology under the title “The Licensing of DNA Patents by US Academic Institutions: An Empirical Survey.” Lori Pressman was the lead author on this feature article. A PDF reprint of the article will be submitted to our Program Officer under separate cover. The project team has continued to update the DNA Patent Database on a weekly basis since the conclusion of the project. The database can be accessed at dnapatents.georgetown.edu. This database provides a valuable research tool for academic researchers, policymakers, and citizens. A report entitled Reaping the Benefits of Genomic and Proteomic Research: Intellectual Property Rights, Innovation, and Public Health was published in 2006 by the Committee on Intellectual Property Rights in Genomic and Protein Research and Innovation, Board on Science, Technology, and Economic Policy at the National Academies. The report was edited by Stephen A. Merrill and Anne-Marie Mazza. This report employed and then adapted the methodology developed by our research project and quoted our findings at several points. (The full report can be viewed online at the following URL: http://www.nap.edu/openbook.php?record_id=11487&page=R1). My colleagues and I are grateful for the research support of the ELSI program at the U.S. Department of Energy.

  8. The PRO-ACT database

    PubMed Central

    Berry, James; Shui, Amy; Zach, Neta; Sherman, Alexander; Sinani, Ervin; Walker, Jason; Katsovskiy, Igor; Schoenfeld, David; Cudkowicz, Merit; Leitner, Melanie

    2014-01-01

    Objective: To pool data from completed amyotrophic lateral sclerosis (ALS) clinical trials and create an open-access resource that enables greater understanding of the phenotype and biology of ALS. Methods: Clinical trials data were pooled from 16 completed phase II/III ALS clinical trials and one observational study. Over 8 million de-identified longitudinally collected data points from over 8,600 individuals with ALS were standardized across trials and merged to create the Pooled Resource Open-Access ALS Clinical Trials (PRO-ACT) database. This database includes demographics, family histories, and longitudinal clinical and laboratory data. Mixed effects models were used to describe the rate of disease progression measured by the Revised ALS Functional Rating Scale (ALSFRS-R) and vital capacity (VC). Cox regression models were used to describe survival data. Implementing Bonferroni correction, the critical p value for 15 different tests was p = 0.003. Results: The ALSFRS-R rate of decline was 1.02 (±2.3) points per month and the VC rate of decline was 2.24% of predicted (±6.9) per month. Higher levels of uric acid at trial entry were predictive of a slower drop in ALSFRS-R (p = 0.01) and VC (p < 0.0001), and longer survival (p = 0.02). Higher levels of creatinine at baseline were predictive of a slower drop in ALSFRS-R (p = 0.01) and VC (p < 0.0001), and longer survival (p = 0.01). Finally, higher body mass index (BMI) at baseline was associated with longer survival (p < 0.0001). Conclusion: The PRO-ACT database is the largest publicly available repository of merged ALS clinical trials data. We report that baseline levels of creatinine and uric acid, as well as baseline BMI, are strong predictors of disease progression and survival. PMID:25298304

  9. Databases for video information sharing

    NASA Astrophysics Data System (ADS)

    Hjelsvold, Rune; Midtstraum, Roger

    1995-03-01

    This paper describes the VideoSTAR experimental database system that is being designed to support video applications in sharing and reusing video data and meta-data. VideoSTAR provides four different repositories: for media files, virtual documents, video structures, and video annotations/user indexes. It also provides a generic video data model relating data in the different repositories to each other, and it offers a powerful application interface. VideoSTAR concepts have been evaluated by developing a number of experimental video tools, such as a video player, a video annotator, a video authoring tool, a video structure and contents browser, and a video query tool.

  10. CD-ROM-aided Databases

    NASA Astrophysics Data System (ADS)

    Hasegawa, Tamae; Osanai, Masaaki

    This paper focuses on practical examples for using the CD-ROM version of Books In Print Plus, a database of book information produced by R. R. Bowker. The paper details the contents, installation and operation procedures, hardware requirements, search functions, search items, print commands, and special features of Books in Print Plus. The paper also includes an evaluation of this product based on four examples from actual office use. The paper concludes with a brief introduction to Ulrich’s Plus, a similar CD-ROM product for periodical information.

  11. Interconnecting heterogeneous database management systems

    NASA Technical Reports Server (NTRS)

    Gligor, V. D.; Luckenbaugh, G. L.

    1984-01-01

    It is pointed out that there is still a great need for the development of improved communication between remote, heterogeneous database management systems (DBMS). Problems regarding the effective communication between distributed DBMSs are primarily related to significant differences between local data managers, local data models and representations, and local transaction managers. A system of interconnected DBMSs which exhibit such differences is called a network of distributed, heterogeneous DBMSs. In order to achieve effective interconnection of remote, heterogeneous DBMSs, the users must have uniform, integrated access to the different DBMs. The present investigation is mainly concerned with an analysis of the existing approaches to interconnecting heterogeneous DBMSs, taking into account four experimental DBMS projects.

  12. ANDES: NOAO's Observatory Database System

    NASA Astrophysics Data System (ADS)

    Gasson, D.; Bell, D.; Hartman, M.

    ANDES (the Advanced NOAO Database Expert System) is NOAO's new observing proposal system. Recent improvements include the phase out of legacy components, such as our previous Access-based effort called ALPS++. New work focuses on pre and post-TAC procedures such as importation, scheduling, collection of observing reports on the mountain, and automatic compilation of various statistics. The ultimate goal is to provide an environment which allows a comprehensive understanding of the collection, evaluation, scheduling, execution and post-execution of proposals and programs.

  13. Database specification for the Worldwide Port System (WPS) Regional Integrated Cargo Database (ICDB)

    SciTech Connect

    Faby, E.Z.; Fluker, J.; Hancock, B.R.; Grubb, J.W.; Russell, D.L.; Loftis, J.P.; Shipe, P.C.; Truett, L.F.

    1994-03-01

    This Database Specification for the Worldwide Port System (WPS) Regional Integrated Cargo Database (ICDB) describes the database organization and storage allocation, provides the detailed data model of the logical and physical designs, and provides information for the construction of parts of the database such as tables, data elements, and associated dictionaries and diagrams.

  14. Teaching Case: Adapting the Access Northwind Database to Support a Database Course

    ERIC Educational Resources Information Center

    Dyer, John N.; Rogers, Camille

    2015-01-01

    A common problem encountered when teaching database courses is that few large illustrative databases exist to support teaching and learning. Most database textbooks have small "toy" databases that are chapter objective specific, and thus do not support application over the complete domain of design, implementation and management concepts…

  15. Creating databases for biological information: an introduction.

    PubMed

    Stein, Lincoln

    2013-06-01

    The essence of bioinformatics is dealing with large quantities of information. Whether it be sequencing data, microarray data files, mass spectrometric data (e.g., fingerprints), the catalog of strains arising from an insertional mutagenesis project, or even large numbers of PDF files, there inevitably comes a time when the information can simply no longer be managed with files and directories. This is where databases come into play. This unit briefly reviews the characteristics of several database management systems, including flat file, indexed file, relational databases, and NoSQL databases. It compares their strengths and weaknesses and offers some general guidelines for selecting an appropriate database management system. PMID:23749755

  16. Database choices in endocrine systematic reviews

    PubMed Central

    Vassar, Matt; Carr, Branden; Kash-Holley, Melissa; DeWitt, Elizabeth; Koller, Chelsea; Day, Joshua; Day, Kimberly; Herrmann, David; Holzmann, Matt

    2015-01-01

    Objective The choice of bibliographic database during the systematic review search process has been an ongoing conversation among information specialists. With newer information sources, such as Google Scholar and clinical trials registries, we were interested in which databases were utilized by information specialists and systematic review researchers. Method We retrieved 144 systematic reviews and meta-analyses from 4 clinical endocrinology journals and extracted all information sources used during the search processes. Results Findings indicate that traditional bibliographic databases are most often used, followed by regional databases, clinical trials registries, and gray literature databases. Conclusions This study informs information specialists about additional resources that may be considered during the search process. PMID:26512217

  17. Secure medical databases: design and operation.

    PubMed

    Pangalos, G J

    1996-10-01

    Medical database security plays an important role in the overall security of medical information systems. The development of appropriate secure database design and operation methodologies is an important problem in the area and a necessary prerequisite for the successful development of such systems. The general framework for medical database security and a number of parameters of the secure medical database design and operation problem are presented and discussed. A secure medical database development methodology is also presented which could help overcome some of the problems currently encountered. PMID:8960922

  18. Data mining in forensic image databases

    NASA Astrophysics Data System (ADS)

    Geradts, Zeno J.; Bijhold, Jurrien

    2002-07-01

    Forensic Image Databases appear in a wide variety. The oldest computer database is with fingerprints. Other examples of databases are shoeprints, handwriting, cartridge cases, toolmarks drugs tablets and faces. In these databases searches are conducted on shape, color and other forensic features. There exist a wide variety of methods for searching in images in these databases. The result will be a list of candidates that should be compared manually. The challenge in forensic science is to combine the information acquired. The combination of the shape of a partial shoe print with information on a cartridge case can result in stronger evidence. It is expected that searching in the combination of these databases with other databases (e.g. network traffic information) more crimes will be solved. Searching in image databases is still difficult, as we can see in databases of faces. Due to lighting conditions and altering of the face by aging, it is nearly impossible to find a right face from a database of one million faces in top position by a image searching method, without using other information. The methods for data mining in images in databases (e.g. MPEG-7 framework) are discussed, and the expectations of future developments are presented in this study.

  19. Overview of selected molecular biological databases

    SciTech Connect

    Rayl, K.D.; Gaasterland, T.

    1994-11-01

    This paper presents an overview of the purpose, content, and design of a subset of the currently available biological databases, with an emphasis on protein databases. Databases included in this summary are 3D-ALI, Berlin RNA databank, Blocks, DSSP, EMBL Nucleotide Database, EMP, ENZYME, FSSP, GDB, GenBank, HSSP, LiMB, PDB, PIR, PKCDD, ProSite, and SWISS-PROT. The goal is to provide a starting point for researchers who wish to take advantage of the myriad available databases. Rather than providing a complete explanation of each database, we present its content and form by explaining the details of typical entries. Pointers to more complete ``user guides`` are included, along with general information on where to search for a new database.

  20. The Molecular Biology Database Collection: 2003 update

    PubMed Central

    Baxevanis, Andreas D.

    2003-01-01

    The Molecular Biology Database Collection is an online resource listing key databases of value to the biological community. This Collection is intended to bring fellow scientists' attention to high-quality databases that are available throughout the world, rather than just be a lengthy listing of all available databases. As such, this up-to-date listing is intended to serve as the jumping-off point from which to find specialized databases that may be of use in advancing biological research. The databases included in this Collection provide new value to the underlying data by virtue of curation, new data connections or other innovative approaches. Short, searchable summaries and updates for each of the databases included in this Collection are available through the Nucleic Acids Research Web site at http://nar.oupjournals.org. PMID:12519937