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Sample records for exponential growth kinetics

  1. Noise in Exponential Growth

    NASA Astrophysics Data System (ADS)

    Iyer-Biswas, Srividya; Wright, Charles; Henry, Jon; Burov, Stas; Lin, Yihan; Crosson, Sean; Dinner, Aaron; Scherer, Norbert

    2013-03-01

    The interplay between growth and division of cells is has been studied in the context of exponential growth of bacterial cells (in suitable conditions) for decades. However, bulk culture studies obscure phenomena that manifest in single cells over many generations. We introduce a unique technology combining microfluidics, single-cell imaging, and quantitative analysis. This enables us to track the growth of single Caulobacter crescentus stalked cells over hundreds of generations. The statistics that we extract indicate a size thresholding mechanism for cell division and a non-trivial scaling collapse of division time distributions at different temperatures. In this talk I shall discuss these observations and a stochastic model of growth and division that captures all our observations with no free parameters.

  2. Modeling Exponential Population Growth

    ERIC Educational Resources Information Center

    McCormick, Bonnie

    2009-01-01

    The concept of population growth patterns is a key component of understanding evolution by natural selection and population dynamics in ecosystems. The National Science Education Standards (NSES) include standards related to population growth in sections on biological evolution, interdependence of organisms, and science in personal and social…

  3. Universality in stochastic exponential growth.

    PubMed

    Iyer-Biswas, Srividya; Crooks, Gavin E; Scherer, Norbert F; Dinner, Aaron R

    2014-07-11

    Recent imaging data for single bacterial cells reveal that their mean sizes grow exponentially in time and that their size distributions collapse to a single curve when rescaled by their means. An analogous result holds for the division-time distributions. A model is needed to delineate the minimal requirements for these scaling behaviors. We formulate a microscopic theory of stochastic exponential growth as a Master Equation that accounts for these observations, in contrast to existing quantitative models of stochastic exponential growth (e.g., the Black-Scholes equation or geometric Brownian motion). Our model, the stochastic Hinshelwood cycle (SHC), is an autocatalytic reaction cycle in which each molecular species catalyzes the production of the next. By finding exact analytical solutions to the SHC and the corresponding first passage time problem, we uncover universal signatures of fluctuations in exponential growth and division. The model makes minimal assumptions, and we describe how more complex reaction networks can reduce to such a cycle. We thus expect similar scalings to be discovered in stochastic processes resulting in exponential growth that appear in diverse contexts such as cosmology, finance, technology, and population growth. PMID:25062238

  4. Universality in Stochastic Exponential Growth

    NASA Astrophysics Data System (ADS)

    Iyer-Biswas, Srividya; Crooks, Gavin E.; Scherer, Norbert F.; Dinner, Aaron R.

    2014-07-01

    Recent imaging data for single bacterial cells reveal that their mean sizes grow exponentially in time and that their size distributions collapse to a single curve when rescaled by their means. An analogous result holds for the division-time distributions. A model is needed to delineate the minimal requirements for these scaling behaviors. We formulate a microscopic theory of stochastic exponential growth as a Master Equation that accounts for these observations, in contrast to existing quantitative models of stochastic exponential growth (e.g., the Black-Scholes equation or geometric Brownian motion). Our model, the stochastic Hinshelwood cycle (SHC), is an autocatalytic reaction cycle in which each molecular species catalyzes the production of the next. By finding exact analytical solutions to the SHC and the corresponding first passage time problem, we uncover universal signatures of fluctuations in exponential growth and division. The model makes minimal assumptions, and we describe how more complex reaction networks can reduce to such a cycle. We thus expect similar scalings to be discovered in stochastic processes resulting in exponential growth that appear in diverse contexts such as cosmology, finance, technology, and population growth.

  5. Exponential Growth of Nonlinear Ballooning Instability

    SciTech Connect

    Zhu, P.; Hegna, C. C.; Sovinec, C. R.

    2009-06-12

    Recent ideal magnetohydrodynamic (MHD) theory predicts that a perturbation evolving from a linear ballooning instability will continue to grow exponentially in the intermediate nonlinear phase at the same linear growth rate. This prediction is confirmed in ideal MHD simulations. When the Lagrangian compression, a measure of the ballooning nonlinearity, becomes of the order of unity, the intermediate nonlinear phase is entered, during which the maximum plasma displacement amplitude as well as the total kinetic energy continues to grow exponentially at the rate of the corresponding linear phase.

  6. Growth Kinetics of Listeria monocytogenes in Broth and Beef Frankfurters– Determination of Lag Phase Duration and Exponential Growth Rate under Isothermal Conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this research was to develop a new kinetic model to describe the isothermal growth of microorganisms. The new model was tested with Listeria monocytogenes in broth and frankfurters, and compared with two commonly used models - Baranyi and modified Gompertz models. Bias factor (BF)...

  7. A Simulation To Model Exponential Growth.

    ERIC Educational Resources Information Center

    Appelbaum, Elizabeth Berman

    2000-01-01

    Describes a simulation using dice-tossing students in a population cluster to model the growth of cancer cells. This growth is recorded in a scatterplot and compared to an exponential function graph. (KHR)

  8. Exponential kinetics of formation of organic microstructures

    NASA Technical Reports Server (NTRS)

    Fraser, C. L.; Folsome, C. E.

    1975-01-01

    Organic microstructure production in Miller-Urey spark discharge flasks is an energy-dependent, autocatalytic process which follows first order kinetics similar to microbial growth curves. These relationships hold for all three major morphological types of microstructures observed. The three types are assembled from smaller precursor subunits which associate according to a binomial distribution. These structures could have formed bounded systems in which pre-biological processes might have occurred.

  9. Exponential kinetics of formation or organic microstructures.

    PubMed

    Fraser, C L; Folsome, C E

    1975-07-01

    Organic microstructure production in Miller-Urey spark discharge flasks in an energy-dependent, autocatalytic process which follows first order kinetics similar to microbial growth curves. These relationships hold for all three major morphological types of microstructures observed. The three types are assembled from smaller precursor subunits which associate according to a binomial distribution. These structures could have formed bounded systems in which pre-biological processes might have occurred. PMID:1187106

  10. Segregated growth kinetics of Escherichia coli DH5α-NH36 in exponential-fed perfusion culture for pDNA vaccine production.

    PubMed

    Munguía-Soto, Rodolfo; García-Rendón, Aurora; Garibay-Escobar, Adriana; Guerrero-Germán, Patricia; Tejeda-Mansir, Armando

    2015-01-01

    The clinical demand of plasmid DNA (pDNA) has been increasing constantly. An exponential-fed perfusion (EFP) culture is a new mode for plasmid production for clinical trials and commercialization. However, the culture conditions may lead to cell filamentation and growth cessation. In this study, the variation of the physiological state and the plasmid contents of Escherichia coli DH5α hosting pVAX1-NH36 in an EFP culture for application as a Leishmaniasis vaccine was investigated. The culture performance was monitored using flow cytometry (FC) and real-time quantitative PCR. The FC studies showed a high viability of cell population and a constant distribution of complexity and size. A high homogeneity of pDNA (>95 % of supercoiled) was obtained, which might be attributed to a better culture environment. The obtained plasmid specific and volumetric yields of 1.8 mg/g dcw and 36.5 mg/L represent typical values for laboratory-scale plasmid production in a defined medium. A segregated kinetic model of the perfusion system was developed and fitted to the experimental data (R(2) > 0.96). A practical conclusion of this work is that a space-time yield analysis of a bioprocess requires a viability evaluation. This new strategy of culture operation might help in the efficient production of pDNA for therapeutic use. PMID:25556882

  11. An Exponential Growth Learning Trajectory: Students' Emerging Understanding of Exponential Growth through Covariation

    ERIC Educational Resources Information Center

    Ellis, Amy B.; Ozgur, Zekiye; Kulow, Torrey; Dogan, Muhammed F.; Amidon, Joel

    2016-01-01

    This article presents an Exponential Growth Learning Trajectory (EGLT), a trajectory identifying and characterizing middle grade students' initial and developing understanding of exponential growth as a result of an instructional emphasis on covariation. The EGLT explicates students' thinking and learning over time in relation to a set of tasks…

  12. A Simple Mechanical Experiment on Exponential Growth

    ERIC Educational Resources Information Center

    McGrew, Ralph

    2015-01-01

    With a rod, cord, pulleys, and slotted masses, students can observe and graph exponential growth in the cord tension over a factor of increase as large as several hundred. This experiment is adaptable for use either in algebra-based or calculus-based physics courses, fitting naturally with the study of sliding friction. Significant parts of the…

  13. 101 Ways to Teach About Exponential Growth and Its Consequences.

    ERIC Educational Resources Information Center

    Allen, Rodney F., Ed.

    Exponential growth is a mega-concept which has many applications. It is fundamental to understanding how and why systems work and fail, be they natural or man-made systems. Lessons/activities in this booklet are designed for Florida teachers to help provide their students with an understanding of the nature and implications of exponential growth.…

  14. Exponential growth of bacteria: Constant multiplication through division

    NASA Astrophysics Data System (ADS)

    Hagen, Stephen J.

    2010-12-01

    The growth of a bacterial culture is one of the most familiar examples of exponential growth, with important consequences in biology and medicine. Bacterial growth involves more than just a rate constant. To sustain exponential growth, the cell must carefully coordinate the accumulation of mass, constant replication of the chromosome, and physical division. Hence, the growth rate is centrally important in any physical and chemical description of a bacterial cell. These aspects of bacterial growth can be described by empirical laws that suggest simple and intuitive models. Therefore, a quantitative discussion of bacterial growth could be a part of any undergraduate biophysics course. We present a general overview of some classic experimental studies and mathematical models of bacterial growth from a mostly physical perspective.

  15. Exponential order statistic models of software reliability growth

    NASA Technical Reports Server (NTRS)

    Miller, D. R.

    1985-01-01

    Failure times of a software reliabilty growth process are modeled as order statistics of independent, nonidentically distributed exponential random variables. The Jelinsky-Moranda, Goel-Okumoto, Littlewood, Musa-Okumoto Logarithmic, and Power Law models are all special cases of Exponential Order Statistic Models, but there are many additional examples also. Various characterizations, properties and examples of this class of models are developed and presented.

  16. Exponential order statistic models of software reliability growth

    NASA Technical Reports Server (NTRS)

    Miller, D. R.

    1986-01-01

    Failure times of a software reliability growth process are modeled as order statistics of independent, nonidentically distributed exponential random variables. The Jelinsky-Moranda, Goel-Okumoto, Littlewood, Musa-Okumoto Logarithmic, and Power Law models are all special cases of Exponential Order Statistic Models, but there are many additional examples also. Various characterizations, properties and examples of this class of models are developed and presented.

  17. Teaching Exponential Growth and Decay: Examples from Medicine

    ERIC Educational Resources Information Center

    Hobbie, Russell K.

    1973-01-01

    A treatment of exponential growth and decay is sketched which does not require knowledge of calculus, and hence, it can be applied to many cases in the biological and medical sciences. Some examples are bacterial growth, sterilization, clearance, and drug absorption. (DF)

  18. Exponential energy growth in adiabatically changing Hamiltonian systems

    NASA Astrophysics Data System (ADS)

    Pereira, Tiago; Turaev, Dmitry

    2015-01-01

    We show that the mixed phase space dynamics of a typical smooth Hamiltonian system universally leads to a sustained exponential growth of energy at a slow periodic variation of parameters. We build a model for this process in terms of geometric Brownian motion with a positive drift, and relate it to the steady entropy increase after each period of the parameters variation.

  19. Iterative exponential growth of stereo- and sequence-controlled polymers

    NASA Astrophysics Data System (ADS)

    Barnes, Jonathan C.; Ehrlich, Deborah J. C.; Gao, Angela X.; Leibfarth, Frank A.; Jiang, Yivan; Zhou, Erica; Jamison, Timothy F.; Johnson, Jeremiah A.

    2015-10-01

    Chemists have long sought sequence-controlled synthetic polymers that mimic nature's biopolymers, but a practical synthetic route that enables absolute control over polymer sequence and structure remains a key challenge. Here, we report an iterative exponential growth plus side-chain functionalization (IEG+) strategy that begins with enantiopure epoxides and facilitates the efficient synthesis of a family of uniform >3 kDa macromolecules of varying sequence and stereoconfiguration that are coupled to produce unimolecular polymers (>6 kDa) with sequences and structures that cannot be obtained using traditional polymerization techniques. Selective side-chain deprotection of three hexadecamers is also demonstrated, which imbues each compound with the ability to dissolve in water. We anticipate that these new macromolecules and the general IEG+ strategy will find broad application as a versatile platform for the scalable synthesis of sequence-controlled polymers.

  20. Exponential potential for an inflaton with nonminimal kinetic coupling and its supergravity embedding

    NASA Astrophysics Data System (ADS)

    Dalianis, Iannis; Farakos, Fotis

    2014-10-01

    In the light of new observational results, we discuss the status of the exponential potentials driving inflation. We depart from the minimal scenario and study an inflaton kinetically coupled to the Einstein tensor. We find that in this case, the exponential potentials are well compatible with observations. Their predictions coincide with those of the chaotic-type quadratic potential for an inflaton minimally coupled to gravity. We show that there exists a simple mapping between the two models. Moreover, a novel aspect of our model is that it features a natural exit from the inflationary phase even in the absence of a minimum. We also turn to supergravity and motivate this sort of potential and the nonminimal kinetic coupling as possible effective dilaton theories.

  1. Integration of large chemical kinetic mechanisms via exponential methods with Krylov approximations to Jacobian matrix functions

    NASA Astrophysics Data System (ADS)

    Bisetti, Fabrizio

    2012-06-01

    Recent trends in hydrocarbon fuel research indicate that the number of species and reactions in chemical kinetic mechanisms is rapidly increasing in an effort to provide predictive capabilities for fuels of practical interest. In order to cope with the computational cost associated with the time integration of stiff, large chemical systems, a novel approach is proposed. The approach combines an exponential integrator and Krylov subspace approximations to the exponential function of the Jacobian matrix. The components of the approach are described in detail and applied to the ignition of stoichiometric methane-air and iso-octane-air mixtures, here described by two widely adopted chemical kinetic mechanisms. The approach is found to be robust even at relatively large time steps and the global error displays a nominal third-order convergence. The performance of the approach is improved by utilising an adaptive algorithm for the selection of the Krylov subspace size, which guarantees an approximation to the matrix exponential within user-defined error tolerance. The Krylov projection of the Jacobian matrix onto a low-dimensional space is interpreted as a local model reduction with a well-defined error control strategy. Finally, the performance of the approach is discussed with regard to the optimal selection of the parameters governing the accuracy of its individual components.

  2. Exponential growth of codimensions of identities of algebras with unity

    NASA Astrophysics Data System (ADS)

    Zaicev, M. V.; Repovš, D.

    2015-10-01

    The asymptotic behaviour is studied of exponentially bounded sequences of codimensions of identities of algebras with unity. A series of algebras is constructed for which the base of the exponential increases by exactly 1 when an outer unity is adjoined to the original algebra. It is shown that the PI-exponents of unital algebras can take any value greater than 2, and the exponents of finite-dimensional unital algebras form a dense subset in the domain \\lbrack 2,∞). Bibliography: 34 titles.

  3. Exponential growth of publications on carbon nanodots by Chinese authors

    PubMed Central

    Wang, Junqing; Choi, Hak Soo

    2015-01-01

    Publication statistics was retrieved on carbon nanodots (C-dots) from 2004 up till 2014 using the web of ScienceTM search engine. The number of publications from Chinese authors increased exponentially during this period. Till 2014 China mainland authors contributed 47% of the total publications. Publications on pharmacology and toxicology lagged far behind the publications on chemistry and material science, indicating that research is not solidly moving toward the direction of application. PMID:26380753

  4. Nucleation and growth transformation kinetics

    NASA Astrophysics Data System (ADS)

    Erukhimovitch, V.; Baram, J.

    1995-03-01

    As a result of the reassessment of the Kolmogorov-Johnson-Mehl-Avrami (KJMA) theory for the kinetics of nucleation and growth transformations, an integral-equation formulation has been developed instead of the well-known and widely used Avrami equation. The presented formulation considers interfacial and diffusional growths, in one, two, and three dimensions, with both time-dependent and time-invariant nucleation and growth rates. The integral-equation model corrects reported inadequacies of the KJMA theory when applied in numerous experiments and various solid-state transformations. It is shown that in the example cases examined in this paper, crystallization from the amorphous state in melt-spun ribbons, isothermal aging of CuAlZn, pearlitic transition in an eutectoid steel, and crystallization in a PEKK polymer, the thermodynamic and kinetic interpretation and parameters extracted from best fits of the Avrami equations to the experimental data are erroneous. The KJMA formulation is a simplification of the real physical conditions. The main limitation of the new model is that almost all the integral equations representing the kinetics of solid-state transformations have no analytical solutions.

  5. A routine fitting of kinetic data to sums of exponentials with a programmable calculator.

    PubMed

    Ristanović, D; Ristanović, D; Milutinović, B; Maleŝević, J; Milin, J

    1984-01-01

    The effects of prolonged ingestion of ethyl alcohol on the elimination kinetics of bromsulphalein (BSP) from the plasma and the excretion of the dye into bile after a single intravenous injection into the circulation of the rat were examined by means of the colorimetrical technique. Simple numerical methods for fitting the experimental data to polyexponential and convex upward functions were also proposed. Two multioptional programs written for the Texas Instrument 59 programmable calculator and for the Sharp 1500 pocket computer were developed which provide for fully automated exponential stripping of pharmacokinetic data and which will allow workers to calculate the numerical values of all the coefficients and exponents for the tracer function fitting the monotone sequences of data. PMID:6547894

  6. Femtosecond Laser Pulse Driven Melting in Gold Nanorod Aqueous Colloidal Suspension: Identification of a Transition from Stretched to Exponential Kinetics

    PubMed Central

    Li, Yuelin; Jiang, Zhang; Lin, Xiao-Min; Wen, Haidan; Walko, Donald A.; Deshmukh, Sanket A.; Subbaraman, Ram; Sankaranarayanan, Subramanian K. R. S.; Gray, Stephen K.; Ho, Phay

    2015-01-01

    Many potential industrial, medical, and environmental applications of metal nanorods rely on the physics and resultant kinetics and dynamics of the interaction of these particles with light. We report a surprising kinetics transition in the global melting of femtosecond laser-driven gold nanorod aqueous colloidal suspension. At low laser intensity, the melting exhibits a stretched exponential kinetics, which abruptly transforms into a compressed exponential kinetics when the laser intensity is raised. It is found the relative formation and reduction rate of intermediate shapes play a key role in the transition. Supported by both molecular dynamics simulations and a kinetic model, the behavior is traced back to the persistent heterogeneous nature of the shape dependence of the energy uptake, dissipation and melting of individual nanoparticles. These results could have significant implications for various applications such as water purification and electrolytes for energy storage that involve heat transport between metal nanorod ensembles and surrounding solvents. PMID:25634673

  7. Femtosecond laser pulse driven melting in gold nanorod aqueous colloidal suspension: Identification of a transition from stretched to exponential kinetics

    DOE PAGESBeta

    Li, Yuelin; Jiang, Zhang; Lin, Xiao -Min; Wen, Haidan; Walko, Donald A.; Deshmukh, Sanket A.; Subbaraman, Ram; Sankaranarayanan, Subramanian K. R. S.; Gray, Stephen K.; Ho, Phay

    2015-01-30

    Many potential industrial, medical, and environmental applications of metal nanorods rely on the physics and resultant kinetics and dynamics of the interaction of these particles with light. We report a surprising kinetics transition in the global melting of femtosecond laser-driven gold nanorod aqueous colloidal suspension. At low laser intensity, the melting exhibits a stretched exponential kinetics, which abruptly transforms into a compressed exponential kinetics when the laser intensity is raised. It is found the relative formation and reduction rate of intermediate shapes play a key role in the transition. Supported by both molecular dynamics simulations and a kinetic model, themore » behavior is traced back to the persistent heterogeneous nature of the shape dependence of the energy uptake, dissipation and melting of individual nanoparticles. These results could have significant implications for various applications such as water purification and electrolytes for energy storage that involve heat transport between metal nanorod ensembles and surrounding solvents.« less

  8. Femtosecond laser pulse driven melting in gold nanorod aqueous colloidal suspension: Identification of a transition from stretched to exponential kinetics

    SciTech Connect

    Li, Yuelin; Jiang, Zhang; Lin, Xiao -Min; Wen, Haidan; Walko, Donald A.; Deshmukh, Sanket A.; Subbaraman, Ram; Sankaranarayanan, Subramanian K. R. S.; Gray, Stephen K.; Ho, Phay

    2015-01-30

    Many potential industrial, medical, and environmental applications of metal nanorods rely on the physics and resultant kinetics and dynamics of the interaction of these particles with light. We report a surprising kinetics transition in the global melting of femtosecond laser-driven gold nanorod aqueous colloidal suspension. At low laser intensity, the melting exhibits a stretched exponential kinetics, which abruptly transforms into a compressed exponential kinetics when the laser intensity is raised. It is found the relative formation and reduction rate of intermediate shapes play a key role in the transition. Supported by both molecular dynamics simulations and a kinetic model, the behavior is traced back to the persistent heterogeneous nature of the shape dependence of the energy uptake, dissipation and melting of individual nanoparticles. These results could have significant implications for various applications such as water purification and electrolytes for energy storage that involve heat transport between metal nanorod ensembles and surrounding solvents.

  9. Cancer Progression and Tumor Growth Kinetics

    NASA Astrophysics Data System (ADS)

    Blagoev, Krastan; Kalpathy-Cramer, Jayashree; Wilkerson, Julia; Sprinkhuizen, Sara; Song, Yi-Qiao; Bates, Susan; Rosen, Bruce; Fojo, Tito

    2013-03-01

    We present and analyze tumor growth data from prostate and brain cancer. Scaling the data from different patients shows that early stage prostate tumors show non-exponential growth while advanced prostate and brain tumors enter a stage of exponential growth. The scaling analysis points to the existence of cancer stem cells and/or massive apoptosis in early stage prostate cancer and that late stage cancer growth is not dominated by cancer stem cells. Statistical models of these two growth modes are discussed. Work supported by the National Science Foundation and the National Institutes of Health

  10. Slow Crack Growth of Brittle Materials With Exponential Crack-Velocity Formulation. Part 1; Analysis

    NASA Technical Reports Server (NTRS)

    Choi, Sung R.; Nemeth, Noel N.; Gyekenyesi, John P.

    2002-01-01

    Extensive slow-crack-growth (SCG) analysis was made using a primary exponential crack-velocity formulation under three widely used load configurations: constant stress rate, constant stress, and cyclic stress. Although the use of the exponential formulation in determining SCG parameters of a material requires somewhat inconvenient numerical procedures, the resulting solutions presented gave almost the same degree of simplicity in both data analysis and experiments as did the power-law formulation. However, the fact that the inert strength of a material should be known in advance to determine the corresponding SCG parameters was a major drawback of the exponential formulation as compared with the power-law formulation.

  11. Rapid growth of seed black holes in the early universe by supra-exponential accretion.

    PubMed

    Alexander, Tal; Natarajan, Priyamvada

    2014-09-12

    Mass accretion by black holes (BHs) is typically capped at the Eddington rate, when radiation's push balances gravity's pull. However, even exponential growth at the Eddington-limited e-folding time t(E) ~ few × 0.01 billion years is too slow to grow stellar-mass BH seeds into the supermassive luminous quasars that are observed when the universe is 1 billion years old. We propose a dynamical mechanism that can trigger supra-exponential accretion in the early universe, when a BH seed is bound in a star cluster fed by the ubiquitous dense cold gas flows. The high gas opacity traps the accretion radiation, while the low-mass BH's random motions suppress the formation of a slowly draining accretion disk. Supra-exponential growth can thus explain the puzzling emergence of supermassive BHs that power luminous quasars so soon after the Big Bang. PMID:25103410

  12. Rapid growth of seed black holes in the early universe by supra-exponential accretion

    NASA Astrophysics Data System (ADS)

    Alexander, Tal; Natarajan, Priyamvada

    2014-09-01

    Mass accretion by black holes (BHs) is typically capped at the Eddington rate, when radiation's push balances gravity's pull. However, even exponential growth at the Eddington-limited e-folding time tE ~ few × 0.01 billion years is too slow to grow stellar-mass BH seeds into the supermassive luminous quasars that are observed when the universe is 1 billion years old. We propose a dynamical mechanism that can trigger supra-exponential accretion in the early universe, when a BH seed is bound in a star cluster fed by the ubiquitous dense cold gas flows. The high gas opacity traps the accretion radiation, while the low-mass BH's random motions suppress the formation of a slowly draining accretion disk. Supra-exponential growth can thus explain the puzzling emergence of supermassive BHs that power luminous quasars so soon after the Big Bang.

  13. Exponential Growth and the Shifting Global Center of Gravity of Science Production, 1900-2011

    ERIC Educational Resources Information Center

    Zhang, Liang; Powell, Justin J. W.; Baker, David P.

    2015-01-01

    Long historical trends in scientific discovery led mid-20th century scientometricians to mark the advent of "big science"--extensive science production--and predicted that over the next few decades, the exponential growth would slow, resulting in lower rates of increase in production at the upper limit of a logistic curve. They were…

  14. Implicit and Explicit Knowledge of Linear and Exponential Growth in 5- and 9-Year-Olds

    ERIC Educational Resources Information Center

    Ebersbach, Mirjam; Resing, Wilma C. M.

    2008-01-01

    The present study examined children's implicit and explicit knowledge of linear and non-linear processes. Five- and nine-year-olds (N = 60) were asked to forecast linear and exponential growth by providing the corresponding number of beads. Implicit knowledge was assessed via the magnitudes of the forecasts; explicit knowledge was investigated…

  15. Understanding Exponential Growth: As Simple as a Drop in a Bucket.

    ERIC Educational Resources Information Center

    Goldberg, Fred; Shuman, James

    1984-01-01

    Provides procedures for a simple laboratory activity on exponential growth and its characteristic doubling time. The equipment needed consists of a large plastic bucket, an eyedropper, a stopwatch, an assortment of containers and graduated cylinders, and a supply of water. (JN)

  16. The mechanism of double-exponential growth in hyper-inflation

    NASA Astrophysics Data System (ADS)

    Mizuno, T.; Takayasu, M.; Takayasu, H.

    2002-05-01

    Analyzing historical data of price indices, we find an extraordinary growth phenomenon in several examples of hyper-inflation in which, price changes are approximated nicely by double-exponential functions of time. In order to explain such behavior we introduce the general coarse-graining technique in physics, the Monte Carlo renormalization group method, to the price dynamics. Starting from a microscopic stochastic equation describing dealers’ actions in open markets, we obtain a macroscopic noiseless equation of price consistent with the observation. The effect of auto-catalytic shortening of characteristic time caused by mob psychology is shown to be responsible for the double-exponential behavior.

  17. Deoxyribonucleic Acid Synthesis During Exponential Growth and Microcyst Formation in Myxococcus xanthus

    PubMed Central

    Rosenberg, Eugene; Katarski, Mary; Gottlieb, Peter

    1967-01-01

    Myxococcus xanthus in exponential phase with a generation time of 270 min contained a period of 50 min during which deoxyribonucleic acid (DNA) synthesis did not take place. After induction of microcysts by the glycerol technique, the DNA content increased 19%. Autoradiographic experiments demonstrated that the DNA made after glycerol induction was not evenly distributed among the microcysts. The distribution of grains per microcyst fits the following model of chromosome replication: in exponential phase, each daughter cell receives two chromosomes which are replicated sequentially during 80% of the divison cycle; after microcyst induction, no chromosomes are initiated. Mathematical formulas were derived which predict the kinetics and discrete probability distribution for several chromosome models. PMID:6032514

  18. A magnetosome-associated cytochrome MamP is critical for magnetite crystal growth during the exponential growth phase.

    PubMed

    Taoka, Azuma; Eguchi, Yukako; Mise, Shingo; Oestreicher, Zachery; Uno, Fumio; Fukumori, Yoshihiro

    2014-09-01

    Magnetotactic bacteria use a specific set of conserved proteins to biomineralize crystals of magnetite or greigite within their cells in organelles called magnetosomes. Using Magnetospirillum magneticum AMB-1, we examined one of the magnetotactic bacteria-specific conserved proteins named MamP that was recently reported as a new type of cytochrome c that has iron oxidase activity. We found that MamP is a membrane-bound cytochrome, and the MamP content increases during the exponential growth phase compared to two other magnetosome-associated proteins on the same operon, MamA and MamK. To assess the function of MamP, we overproduced MamP from plasmids in wild-type (WT) AMB-1 and found that during the exponential phase of growth, these cells contained more magnetite crystals that were the same size as crystals in WT cells. Conversely, when the heme c-binding motifs within the mamP on the plasmid was mutated, the cells produced the same number of crystals, but smaller crystals than in WT cells during exponential growth. These results strongly suggest that during the exponential phase of growth, MamP is crucial to the normal growth of magnetite crystals during biomineralization. PMID:25048532

  19. Growth potential of exponential- and stationary-phase Salmonella Typhimurium during sausage fermentation.

    PubMed

    Birk, T; Henriksen, S; Müller, K; Hansen, T B; Aabo, S

    2016-11-01

    Raw meat for sausage production can be contaminated with Salmonella. For technical reasons, meat is often frozen prior to mincing but it is unknown how growth of Salmonella in meat prior to freezing affects its growth potential during sausage fermentation. We investigated survival of exponential- and stationary-phase Salmonella Typhimurium (DT12 and DTU292) during freezing at -18°C and their subsequent growth potential during 72h sausage fermentation at 25°C. After 0, 7 and >35d of frozen storage, sausage batters were prepared with NaCl (3%) and NaNO2 (0, 100ppm) and fermented with and without starter culture. With no starter culture, both strains grew in both growth phases. In general, a functional starter culture abolished S. Typhimurium growth independent of growth phase and we concluded that ensuring correct fermentation is important for sausage safety. However, despite efficient fermentation, sporadic growth of exponential-phase cells of S. Typhimurium was observed drawing attention to the handling and storage of sausage meat. PMID:27423056

  20. Growth kinetics and morphology of polymer crystals

    NASA Astrophysics Data System (ADS)

    Toda, Akihiko

    2007-03-01

    Originating from the nature of chain folding, polymer single crystals are quite unique in the growth kinetics and morphology. The developments of the understanding in the past 50 years are discussed and the unsolved important issues will be suggested. Polymer single crystals are thin lamellae with the thickness in the order of 10nm determined by the period of chain folding, which keeps a constant value for the isothermal crystallization. The growth of polymer single crystals is modeled by the kinetics of creation and annihilation of growth steps on a rectangular substrate with the pre-determined thickness. The growth face is therefore regarded as a one-dimensional substrate and the kinks and anti-kinks on the substrate correspond to the growth steps propagating in the opposite directions. The kinetic equations of those kinks proposed by Seto and Frank well describe the transition of growth regime as a crossover from single nucleation to multi-nucleation on the basis of the standard model of chain-folded polymer crystallization with surface nucleation proposed by Lauritzen and Hoffman. However, the analysis of the growth kinetics and morphology of single crystals having curved growth front suggests an unusual behavior of the step propagation velocity. The anomaly can be accounted for by a self-poisoning of the growth step interrupted by polymer chains with folding shorter than required. An entropic barrier of pinning proposed by Sadler and Gilmer is a possible candidate of the self-poisoning and is in accordance with recent computer simulation results suggesting the kinetics on a rugged free energy landscape having a resemblance to protein folding. Therefore, the quantitative evaluation of the kinetic barriers of surface nucleation and pinning has been an important issue. In addition, examination of the kinetics of melting will have valuable information because melting of a crystal must be free from nucleation but can still be limited by the entropic barrier.

  1. Exponential-fitted methods for integrating stiff systems of ordinary differential equations: Applications to homogeneous gas-phase chemical kinetics

    NASA Technical Reports Server (NTRS)

    Pratt, D. T.

    1984-01-01

    Conventional algorithms for the numerical integration of ordinary differential equations (ODEs) are based on the use of polynomial functions as interpolants. However, the exact solutions of stiff ODEs behave like decaying exponential functions, which are poorly approximated by polynomials. An obvious choice of interpolant are the exponential functions themselves, or their low-order diagonal Pade (rational function) approximants. A number of explicit, A-stable, integration algorithms were derived from the use of a three-parameter exponential function as interpolant, and their relationship to low-order, polynomial-based and rational-function-based implicit and explicit methods were shown by examining their low-order diagonal Pade approximants. A robust implicit formula was derived by exponential fitting the trapezoidal rule. Application of these algorithms to integration of the ODEs governing homogenous, gas-phase chemical kinetics was demonstrated in a developmental code CREK1D, which compares favorably with the Gear-Hindmarsh code LSODE in spite of the use of a primitive stepsize control strategy.

  2. Forecasting Financial Extremes: A Network Degree Measure of Super-Exponential Growth.

    PubMed

    Yan, Wanfeng; van Tuyll van Serooskerken, Edgar

    2015-01-01

    Investors in stock market are usually greedy during bull markets and scared during bear markets. The greed or fear spreads across investors quickly. This is known as the herding effect, and often leads to a fast movement of stock prices. During such market regimes, stock prices change at a super-exponential rate and are normally followed by a trend reversal that corrects the previous overreaction. In this paper, we construct an indicator to measure the magnitude of the super-exponential growth of stock prices, by measuring the degree of the price network, generated from the price time series. Twelve major international stock indices have been investigated. Error diagram tests show that this new indicator has strong predictive power for financial extremes, both peaks and troughs. By varying the parameters used to construct the error diagram, we show the predictive power is very robust. The new indicator has a better performance than the LPPL pattern recognition indicator. PMID:26339793

  3. Forecasting Financial Extremes: A Network Degree Measure of Super-Exponential Growth

    PubMed Central

    Yan, Wanfeng; van Tuyll van Serooskerken, Edgar

    2015-01-01

    Investors in stock market are usually greedy during bull markets and scared during bear markets. The greed or fear spreads across investors quickly. This is known as the herding effect, and often leads to a fast movement of stock prices. During such market regimes, stock prices change at a super-exponential rate and are normally followed by a trend reversal that corrects the previous overreaction. In this paper, we construct an indicator to measure the magnitude of the super-exponential growth of stock prices, by measuring the degree of the price network, generated from the price time series. Twelve major international stock indices have been investigated. Error diagram tests show that this new indicator has strong predictive power for financial extremes, both peaks and troughs. By varying the parameters used to construct the error diagram, we show the predictive power is very robust. The new indicator has a better performance than the LPPL pattern recognition indicator. PMID:26339793

  4. Power Law Versus Exponential Form of Slow Crack Growth of Advanced Structural Ceramics: Dynamic Fatigue

    NASA Technical Reports Server (NTRS)

    Choi, Sung R.; Gyekenyesi, John P.

    2002-01-01

    The life prediction analysis based on an exponential crack velocity formulation was examined using a variety of experimental data on glass and advanced structural ceramics in constant stress-rate ("dynamic fatigue") and preload testing at ambient and elevated temperatures. The data fit to the strength versus In (stress rate) relation was found to be very reasonable for most of the materials. It was also found that preloading technique was equally applicable for the case of slow crack growth (SCG) parameter n > 30. The major limitation in the exponential crack velocity formulation, however, was that an inert strength of a material must be known priori to evaluate the important SCG parameter n, a significant drawback as compared to the conventional power-law crack velocity formulation.

  5. Observation of Self-Amplified Spontaneous Emission and Exponential Growth at 530 nm

    NASA Astrophysics Data System (ADS)

    Milton, S. V.; Gluskin, E.; Biedron, S. G.; Dejus, R. J.; den Hartog, P. K.; Galayda, J. N.; Kim, K.-J.; Lewellen, J. W.; Moog, E. R.; Sajaev, V.; Sereno, N. S.; Travish, G.; Vinokurov, N. A.; Arnold, N. D.; Benson, C.; Berg, W.; Biggs, J. A.; Borland, M.; Carwardine, J. A.; Chae, Y.-C.; Decker, G.; Deriy, B. N.; Erdmann, M. J.; Friedsam, H.; Gold, C.; Grelick, A. E.; Hahne, M. W.; Harkay, K. C.; Huang, Z.; Lessner, E. S.; Lill, R. M.; Lumpkin, A. H.; Makarov, O. A.; Markovich, G. M.; Meyer, D.; Nassiri, A.; Noonan, J. R.; Pasky, S. J.; Pile, G.; Smith, T. L.; Soliday, R.; Tieman, B. J.; Trakhtenberg, E. M.; Trento, G. F.; Vasserman, I. B.; Walters, D. R.; Wang, X. J.; Wiemerslage, G.; Xu, S.; Yang, B.-X.

    2000-07-01

    Experimental evidence for self-amplified spontaneous emission (SASE) at 530 nm is reported. The measurements were made at the low-energy undulator test line facility at the Advanced Photon Source, Argonne National Laboratory. The experimental setup and details of the experimental results are presented, as well as preliminary analysis. This experiment extends to shorter wavelengths the operational knowledge of a linac-based SASE free-electron laser and explicitly shows the predicted exponential growth in intensity of the optical pulse as a function of length along the undulator.

  6. Exponential energy growth due to slow parameter oscillations in quantum mechanical systems

    NASA Astrophysics Data System (ADS)

    Turaev, Dmitry

    2016-05-01

    It is shown that a periodic emergence and destruction of an additional quantum number leads to an exponential growth of energy of a quantum mechanical system subjected to a slow periodic variation of parameters. The main example is given by systems (e.g., quantum billiards and quantum graphs) with periodically divided configuration space. In special cases, the process can also lead to a long period of cooling that precedes the acceleration, and to the desertion of the states with a particular value of the quantum number.

  7. Exponential growth of dental schools in Chile: effects on academic, economic and workforce issues.

    PubMed

    Cartes-Velásquez, Ricardo Andrés

    2013-01-01

    In the last 30 years, Chile has undergone noteworthy economic development and an exponential growth in the access of its population to higher education. The aim of this paper was to review the changes in academic, economic and workforce issues that occurred as a consequence of the growth in supply of undergraduate dental vacancies between 1997 and 2011. Data collected from the Consejo de Educación Superior - CES, Comisión Nacional de Acreditación - CNA, and Instituto Nacional de Estadísticas de Chile - INE included these variables: number of dental schools, school type (private or traditional, see explanation below), city where the school is located, entry vacancies, total student enrollment, admission scores, percentile rank of dentistry as a university career, tuition fees, accreditation status, and number of inhabitants. There was an exponential increase in dental schools in Chile (5 to 34) that occurred in association with the rise in tuition fees (US$ 3900 to US$ 9800), a deterioration in the academic level of dental students (650 to 550 points in admission scores) and a predicted 77.5% oversupply of dentists by 2025, according to WHO criteria. The exponential increase in dental schools in Chile brought about negative consequences, such as increasing career costs, deterioration in the academic level of dental students, and an oversupply of dentists, associated with lower incomes and possibly leading to unemployment. Additional research should be conducted to determine whether an increase in the number of dentists can improve the population's access to dental care and reduce the oral disease burden. PMID:24346044

  8. Transport and Growth Kinetics in Microgravity Protein Crystal Growth

    NASA Technical Reports Server (NTRS)

    Otalora, F.; Garcia-Ruiz, J. M.; Carotenuto, L.; Castagnolo, D.; Novella, M. L.; Chernov, A. A.

    2002-01-01

    The dynamic coupling between mass transport and incorporation of growth units into the surface of a crystal growing from solution in microgravity is used to derive quantitative information on the crystal growth kinetics. To this end, new procedures for experiment preparation, interferometric data processing and model fitting have been developed. The use of experimental data from the bulk diffusive maw transport together with a model for steady state stagnant crystal growth allows the detailed quantitative understanding of the kinetics of both the concentration depletion zone around the crystal and the growth of the crystal interface. The protein crystal used in the experiment is shown to be growing in the mixed kinetic regime (0.2 x 10(exp -6) centimeters per second less than beta R/D less than 0.9 x 10(exp -6) centimeters per second).

  9. An integrated model for predictive microbiology and simultaneous determination of lag phase duration and exponential growth rate

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A new mechanistic growth model was developed to describe microbial growth under isothermal conditions. The development of the mathematical model was based on the fundamental phenomenon of microbial growth, which is normally a three-stage process that includes lag, exponential, and stationary phases...

  10. Stretching of single poly-ubiquitin molecules revisited: Dynamic disorder in the non-exponential unfolding kinetics

    NASA Astrophysics Data System (ADS)

    Zheng, Yue; Bian, Yukun; Zhao, Nanrong; Hou, Zhonghuai

    2014-03-01

    A theoretical framework based on a generalized Langevin equation (GLE) with fractional Gaussian noise (fGn) and a power-law memory kernel is presented to describe the non-exponential kinetics of the unfolding of a single poly-ubiquitin molecule under a constant force [T.-L. Kuo, S. Garcia-Manyes, J. Li, I. Barel, H. Lu, B. J. Berne, M. Urbakh, J. Klafter, and J. M. Fernández, Proc. Natl. Acad. Sci. U.S.A. 107, 11336 (2010)]. Such a GLE-fGn strategy is made on the basis that the pulling coordinate variable x undergoes subdiffusion, usually resulting from conformational fluctuations, over a one-dimensional force-modified free-energy surface U(x, F). By using the Kramers' rate theory, we have obtained analytical formulae for the time-dependent rate coefficient k(t, F), the survival probability S(t, F) as well as the waiting time distribution function f(t, F) as functions of time t and force F. We find that our results can fit the experimental data of f(t, F) perfectly in the whole time range with a power-law exponent γ = 1/2, the characteristic of typical anomalous subdiffusion. In addition, the fitting of the survival probabilities for different forces facilitates us to reach rather reasonable estimations for intrinsic properties of the system, such as the free-energy barrier and the distance between the native conformation and the transition state conformation along the reaction coordinate, which are in good agreements with molecular dynamics simulations in the literatures. Although static disorder has been implicated in the original work of Kuo et al., our work suggests a sound and plausible alternative interpretation for the non-exponential kinetics in the stretching of poly-ubiquitin molecules, associated with dynamic disorder.

  11. Volumetric analysis of syringomyelia following hindbrain decompression for Chiari malformation Type I: syringomyelia resolution follows exponential kinetics

    PubMed Central

    Coumans, Jean-Valery; Walcott, Brian P.; Butler, William E.; Nahed, Brian V.; Kahle, Kristopher T.

    2013-01-01

    Object Resolution of syringomyelia is common following hindbrain decompression for Chiari malformation, yet little is known about the kinetics governing this process. The authors sought to establish the volumetric rate of syringomyelia resolution. Methods A retrospective cohort of patients undergoing hindbrain decompression for a Chiari malformation Type I with preoperative cervical or thoracic syringomyelia was identified. Patients were included in the study if they had at least 3 neuroimaging studies that detailed the entirety of their preoperative syringomyelia over a minimum of 6 months postoperatively. The authors reconstructed the MR images in 3 dimensions and calculated the volume of the syringomyelia. They plotted the syringomyelia volume over time and constructed regression models using the method of least squares. The Akaike information criterion and Bayesian information criterion were used to calculate the relative goodness of fit. The coefficients of determination R2 (unadjusted and adjusted) were calculated to describe the proportion of variability in each individual data set accounted for by the statistical model. Results Two patients were identified as meeting inclusion criteria. Plots of the least-squares best fit were identified as 4.01459e−0.0180804x and 13.2556e−0.00615859x. Decay of the syringomyelia followed an exponential model in both patients (R2 = 0.989582 and 0.948864). Conclusions Three-dimensional analysis of syringomyelia resolution over time enables the kinetics to be estimated. This technique is yet to be validated in a large cohort. Because syringomyelia is the final common pathway for a number of different pathological processes, it is possible that this exponential only applies to syringomyelia related to treatment of Chiari malformation Type I. PMID:21882909

  12. Modeling the Pre-Industrial Roots of Modern Super-Exponential Population Growth

    PubMed Central

    Stutz, Aaron Jonas

    2014-01-01

    To Malthus, rapid human population growth—so evident in 18th Century Europe—was obviously unsustainable. In his Essay on the Principle of Population, Malthus cogently argued that environmental and socioeconomic constraints on population rise were inevitable. Yet, he penned his essay on the eve of the global census size reaching one billion, as nearly two centuries of super-exponential increase were taking off. Introducing a novel extension of J. E. Cohen's hallmark coupled difference equation model of human population dynamics and carrying capacity, this article examines just how elastic population growth limits may be in response to demographic change. The revised model involves a simple formalization of how consumption costs influence carrying capacity elasticity over time. Recognizing that complex social resource-extraction networks support ongoing consumption-based investment in family formation and intergenerational resource transfers, it is important to consider how consumption has impacted the human environment and demography—especially as global population has become very large. Sensitivity analysis of the consumption-cost model's fit to historical population estimates, modern census data, and 21st Century demographic projections supports a critical conclusion. The recent population explosion was systemically determined by long-term, distinctly pre-industrial cultural evolution. It is suggested that modern globalizing transitions in technology, susceptibility to infectious disease, information flows and accumulation, and economic complexity were endogenous products of much earlier biocultural evolution of family formation's embeddedness in larger, hierarchically self-organizing cultural systems, which could potentially support high population elasticity of carrying capacity. Modern super-exponential population growth cannot be considered separately from long-term change in the multi-scalar political economy that connects family formation and

  13. Microscopic kinetic model for polymer crystal growth

    NASA Astrophysics Data System (ADS)

    Hu, Wenbing

    2011-03-01

    Linear crystal growth rates characterize the net result of competition between growth and melting at the liquid-solid interfaces. The rate equation for polymer crystal growth can be derived with a barrier term for crystal growth and with a driving force term of excess lamellar thickness, provided that growth and melting share the same rate-determining steps at the growth front. Such an ansatz can be verified by the kinetic symmetry between growth and melting around the melting point of lamellar crystals, as made in our recent dynamic Monte Carlo simulations. The profile of the growth/melting front appears as wedge-shaped, with the free energy barrier for intramolecular secondary crystal nucleation at its top, and with the driving force gained via instant thickening at its bottom. Such a scenario explains unique phenomena on polymer crystal growth, such as chain folding, regime transitions, molecular segregation of polydisperse polymers, self-poisoning with integer-number chain-folding of short chains, and colligative growth rates of binary mixtures of two chain lengths. Financial support from NNSFC No. 20825415 and NBRPC No. 2011CB606100 is acknowledged.

  14. A Minimal Model of the E. Coli Bacterium in Exponential Phase Growth

    NASA Astrophysics Data System (ADS)

    Maitra, Arijit; Dill, Ken

    2013-03-01

    We study the fundamental process of exponential cell growth in the E. Coli bacterium under conditions of extracellular glucose limitations using a minimalistic reaction framework by accounting for energy metabolism and protein synthesis. The cell model has three nodes: ATP, the ribosomal and the non-ribosomal proteins. Their interdependencies and dynamics are wrapped in a system of ordinary differential equations. The formulations of their interactive fluxes capture the essence of cellular physiology under conditions of growth. We solve the model numerically for different glucose concentrations, and, where possible, explore the cell states analytically under steady state conditions. We verify the model predictions with available experimental data. The model lets us quantify the coupling between energy generation and biomass growth. An implication of this model is that it provides a layout to compute the fitness landscape in terms of the parameters of the cells, such as the protein translation rates, to make hypotheses about possible routes for cellular evolution under glucose limitation. Laufer Center for Phys. and Quant. Biology.

  15. Can the Site-Frequency Spectrum Distinguish Exponential Population Growth from Multiple-Merger Coalescents?

    PubMed Central

    Eldon, Bjarki; Birkner, Matthias; Blath, Jochen; Freund, Fabian

    2015-01-01

    The ability of the site-frequency spectrum (SFS) to reflect the particularities of gene genealogies exhibiting multiple mergers of ancestral lines as opposed to those obtained in the presence of population growth is our focus. An excess of singletons is a well-known characteristic of both population growth and multiple mergers. Other aspects of the SFS, in particular, the weight of the right tail, are, however, affected in specific ways by the two model classes. Using an approximate likelihood method and minimum-distance statistics, our estimates of statistical power indicate that exponential and algebraic growth can indeed be distinguished from multiple-merger coalescents, even for moderate sample sizes, if the number of segregating sites is high enough. A normalized version of the SFS (nSFS) is also used as a summary statistic in an approximate Bayesian computation (ABC) approach. The results give further positive evidence as to the general eligibility of the SFS to distinguish between the different histories. PMID:25575536

  16. Protein crystal growth - Growth kinetics for tetragonal lysozyme crystals

    NASA Technical Reports Server (NTRS)

    Pusey, M. L.; Snyder, R. S.; Naumann, R.

    1986-01-01

    Results are reported from theoretical and experimental studies of the growth rate of lysozyme as a function of diffusion in earth-gravity conditions. The investigations were carried out to form a comparison database for future studies of protein crystal growth in the microgravity environment of space. A diffusion-convection model is presented for predicting crystal growth rates in the presence of solutal concentration gradients. Techniques used to grow and monitor the growth of hen egg white lysozyme are detailed. The model calculations and experiment data are employed to discuss the effects of transport and interfacial kinetics in the growth of the crystals, which gradually diminished the free energy in the growth solution. Density gradient-driven convection, caused by presence of the gravity field, was a limiting factor in the growth rate.

  17. Growth kinetics of Bacillus stearothermophilus BR219

    SciTech Connect

    Worden, R.M.; Subramanian, R.; Bly, M.J.; Winter, S.; Aronson, C.L.

    1991-12-31

    Bacillus stearothermophilus BR219, a phenol-resistant thermophile, can convert phenol to the specialty chemical catechol. The growth kinetics of this organism were studied in batch, continuous, and immobilized-cell culture. Batch growth was insensitive to pH between 6.0 and 8.0, but little growth occurred at 5.5. In continuous culture on a dilute medium supplemented with 10 mM phenol, several steady states were achieved between dilution rates of 0.25 and 1.3 h{sup -1}. Phenol degradation was found to be uncoupled from growth. Immobilized cells grew rapidly in a rich medium, but cell viability plummeted following a switch to a dilute medium supplemented with 5 mM phenol.

  18. Morphological stability and kinetics in crystal growth from vapors

    NASA Technical Reports Server (NTRS)

    Rosenberger, Franz

    1990-01-01

    The following topics are discussed: (1) microscopy image storage and processing system; (2) growth kinetics and morphology study with carbon tetrabromide; (3) photothermal deflection vapor growth setup; (4) bridgman growth of iodine single crystals; (5) vapor concentration distribution measurement during growth; and (6) Monte Carlo modeling of anisotropic growth kinetics and morphology. A collection of presentations and publications of these results are presented.

  19. Entrainability of cell cycle oscillator models with exponential growth of cell mass.

    PubMed

    Nakao, Mitsuyuki; Enkhkhudulmur, Tsog-Erdene; Katayama, Norihiro; Karashima, Akihiro

    2014-01-01

    Among various aspects of cell cycle, understanding synchronization mechanism of cell cycle is important because of the following reasons. (1)Cycles of cell assembly should synchronize to form an organ. (2) Synchronizing cell cycles are required to experimental analysis of regulatory mechanisms of cell cycles. (3) Cell cycle has a distinct phase relationship with the other biological rhythms such as circadian rhythm. However, forced as well as mutual entrainment mechanisms are not clearly known. In this study, we investigated entrainability of cell cycle models of yeast cell under the periodic forcing to both of the cell mass and molecular dynamics. Dynamics of models under study involve the cell mass growing exponentially. In our result, they are shown to allow only a limited frequency range for being entrained by the periodic forcing. In contrast, models with linear growth are shown to be entrained in a wider frequency range. It is concluded that if the cell mass is included in the cell cycle regulation, its entrainability is sensitive to a shape of growth curve assumed in the model. PMID:25571564

  20. Droplet Growth Kinetics in Various Environments

    NASA Astrophysics Data System (ADS)

    Raatikainen, T. E.; Lathem, T. L.; Moore, R.; Lin, J. J.; Cerully, K. M.; Padro, L.; Lance, S.; Cozic, J.; Anderson, B. E.; Nenes, A.

    2012-12-01

    The largest uncertainties in the effects of atmospherics aerosols on the global radiation budget are related to their indirect effects on cloud properties (IPCC, the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, 2007). Cloud formation is a kinetic process where the resulting cloud properties depend on aerosol properties and meteorological parameters such as updraft velocity (e.g. McFiggans et al., Atmos. Chem. Phys., 6, 2593-2649, 2006). Droplet growth rates are limited by the water vapor diffusion, but additional kinetic limitations, e.g., due to organic surface films, slow solute dissociation or highly viscous or glassy aerosol states have been hypothesized. Significant additional kinetic limitations can lead to increased cloud droplet number concentration, thus the effect is similar to those of increased aerosol number concentration or changes in vertical velocity (e.g. Nenes et al., Geophys. Res. Lett., 29, 1848, 2002). There are a few studies where slow droplet growth has been observed (e.g. Ruehl et al., Geophys. Res. Lett., 36, L15814, 2009), however, little is currently known about their global occurrence and magnitude. Cloud micro-physics models often describe kinetic limitations by an effective water vapor uptake coefficient or similar parameter. Typically, determining aerosol water vapor uptake coefficients requires experimental observations of droplet growth which are interpreted by a numerical droplet growth model where the uptake coefficient is an adjustable parameter (e.g. Kolb et al., Atmos. Chem. Phys., 10, 10561-10605, 2010). Such methods have not been practical for high time-resolution or long term field measurements, until a model was recently developed for analyzing Droplet Measurement Technologies (DMT) cloud condensation nuclei (CCN) counter data (Raatikainen et al., Atmos. Chem. Phys., 12, 4227-4243, 2012). Model verification experiments showed that the calibration aerosol droplet size can be predicted accurately

  1. Teaching the Verhulst Model: A Teaching Experiment in Covariational Reasoning and Exponential Growth

    ERIC Educational Resources Information Center

    Castillo-Garsow, Carlos

    2010-01-01

    Both Thompson and the duo of Confrey and Smith describe how students might be taught to build "ways of thinking" about exponential behavior by coordinating the covariation of two changing quantities, however, these authors build exponential behavior from different meanings of covariation. Confrey and Smith advocate beginning with discrete additive…

  2. The Cultural Divide: Exponential Growth in Classical 2D and Metabolic Equilibrium in 3D Environments

    PubMed Central

    Kanlaya, Rattiyaporn; Borkowski, Kamil; Schwämmle, Veit; Dai, Jie; Joensen, Kira Eyd; Wojdyla, Katarzyna; Carvalho, Vasco Botelho; Fey, Stephen J.

    2014-01-01

    Introduction Cellular metabolism can be considered to have two extremes: one is characterized by exponential growth (in 2D cultures) and the other by a dynamic equilibrium (in 3D cultures). We have analyzed the proteome and cellular architecture at these two extremes and found that they are dramatically different. Results Structurally, actin organization is changed, microtubules are increased and keratins 8 and 18 decreased. Metabolically, glycolysis, fatty acid metabolism and the pentose phosphate shunt are increased while TCA cycle and oxidative phosphorylation is unchanged. Enzymes involved in cholesterol and urea synthesis are increased consistent with the attainment of cholesterol and urea production rates seen in vivo. DNA repair enzymes are increased even though cells are predominantly in Go. Transport around the cell – along the microtubules, through the nuclear pore and in various types of vesicles has been prioritized. There are numerous coherent changes in transcription, splicing, translation, protein folding and degradation. The amount of individual proteins within complexes is shown to be highly coordinated. Typically subunits which initiate a particular function are present in increased amounts compared to other subunits of the same complex. Summary We have previously demonstrated that cells at dynamic equilibrium can match the physiological performance of cells in tissues in vivo. Here we describe the multitude of protein changes necessary to achieve this performance. PMID:25222612

  3. Metabolic Flux Analysis during the Exponential Growth Phase of Saccharomyces cerevisiae in Wine Fermentations

    PubMed Central

    Quirós, Manuel; Martínez-Moreno, Rubén; Albiol, Joan; Morales, Pilar; Vázquez-Lima, Felícitas; Barreiro-Vázquez, Antonio; Ferrer, Pau; Gonzalez, Ramon

    2013-01-01

    As a consequence of the increase in global average temperature, grapes with the adequate phenolic and aromatic maturity tend to be overripe by the time of harvest, resulting in increased sugar concentrations and imbalanced C/N ratios in fermenting musts. This fact sets obvious additional hurdles in the challenge of obtaining wines with reduced alcohols levels, a new trend in consumer demands. It would therefore be interesting to understand Saccharomyces cerevisiae physiology during the fermentation of must with these altered characteristics. The present study aims to determine the distribution of metabolic fluxes during the yeast exponential growth phase, when both carbon and nitrogen sources are in excess, using continuous cultures. Two different sugar concentrations were studied under two different winemaking temperature conditions. Although consumption and production rates for key metabolites were severely affected by the different experimental conditions studied, the general distribution of fluxes in central carbon metabolism was basically conserved in all cases. It was also observed that temperature and sugar concentration exerted a higher effect on the pentose phosphate pathway and glycerol formation than on glycolysis and ethanol production. Additionally, nitrogen uptake, both quantitatively and qualitatively, was strongly influenced by environmental conditions. This work provides the most complete stoichiometric model used for Metabolic Flux Analysis of S. cerevisiae in wine fermentations employed so far, including the synthesis and release of relevant aroma compounds and could be used in the design of optimal nitrogen supplementation of wine fermentations. PMID:23967264

  4. Long-wave theory for a new convective instability with exponential growth normal to the wall.

    PubMed

    Healey, J J

    2005-05-15

    A linear stability theory is presented for the boundary-layer flow produced by an infinite disc rotating at constant angular velocity in otherwise undisturbed fluid. The theory is developed in the limit of long waves and when the effects of viscosity on the waves can be neglected. This is the parameter regime recently identified by the author in a numerical stability investigation where a curious new type of instability was found in which disturbances propagate and grow exponentially in the direction normal to the disc, (i.e. the growth takes place in a region of zero mean shear). The theory describes the mechanisms controlling the instability, the role and location of critical points, and presents a saddle-point analysis describing the large-time evolution of a wave packet in frames of reference moving normal to the disc. The theory also shows that the previously obtained numerical solutions for numerically large wavelengths do indeed lie in the asymptotic long-wave regime, and so the behaviour and mechanisms described here may apply to a number of cross-flow instability problems. PMID:16105773

  5. Volume Diffusion Growth Kinetics and Step Geometry in Crystal Growth

    NASA Technical Reports Server (NTRS)

    Mazuruk, Konstantin; Ramachandran, Narayanan

    1998-01-01

    The role of step geometry in two-dimensional stationary volume diff4sion process used in crystal growth kinetics models is investigated. Three different interface shapes: a) a planar interface, b) an equidistant hemispherical bumps train tAx interface, and c) a train of right angled steps, are used in this comparative study. The ratio of the super-saturation to the diffusive flux at the step position is used as a control parameter. The value of this parameter can vary as much as 50% for different geometries. An approximate analytical formula is derived for the right angled steps geometry. In addition to the kinetic models, this formula can be utilized in macrostep growth models. Finally, numerical modeling of the diffusive and convective transport for equidistant steps is conducted. In particular, the role of fluid flow resulting from the advancement of steps and its contribution to the transport of species to the steps is investigated.

  6. Amyloid growth: combining experiment and kinetic theory

    NASA Astrophysics Data System (ADS)

    Knowles, Tuomas; Cohen, Samuel; Vendruscolo, Michele; Dobson, Christopher

    2012-02-01

    The conversion of proteins from their soluble forms into fibrillar amyloid nanostructures is a general type of behaviour encountered for many different proteins in the context of disease as well as for the generation of a select class of functional materials in nature. This talk focuses on the problem of defining the rates of the individual molecular level processes involved in the overall conversion reaction. A master equation approach is discussedootnotetextCohen et al, J Chem Phys 2011, 135, 065106 ootnotetextKnowles et al, Science, 2009, 326, 1533-1537 and used in combination with kinetic measurements to yield mechanistic insights into the amyloid growth phenomenon.

  7. Growth kinetics of Si and Ge nanowires

    NASA Astrophysics Data System (ADS)

    Kodambaka, S.; Tersoff, J.; Reuter, M. C.; Ross, F. M.

    2009-02-01

    Si and Ge nanowires have potential applications in a wide variety of areas including thermoelectrics, optoelectronics, and sensors. Nanowires are most commonly grown via the vapor-liquid-solid (VLS) process. In this method, a vapor phase containing the material of interest preferentially dissociates at a liquid catalyst and is incorporated as a solid at the solid-liquid interface. However, despite 40 years of research in this area, several aspects of nanowire growth remain unclear, even for relatively simple elemental Si and Ge wires. Here, we will review our in situ transmission electron microscopy (TEM) investigations of Si and Ge nanowire growth kinetics. The observations are carried out in an ultra-high vacuum TEM (the IBM UHV-TEM) equipped with facilities for deposition during observation. Using Au as the catalyst, we study the VLS growth of Si and Ge nanowires as a function of disilane or digermane pressure and substrate temperature. We find surprisingly different growth mechanisms for the two materials. The insights gained from in situ results may help devise methods for large-scale fabrication of wires with controlled architecture.

  8. Slow Crack Growth of Brittle Materials With Exponential Crack-Velocity Formulation. Part 2; Constant Stress Rate Experiments

    NASA Technical Reports Server (NTRS)

    Choi, Sung R.; Nemeth, Noel N.; Gyekenyesi, John P.

    2002-01-01

    The previously determined life prediction analysis based on an exponential crack-velocity formulation was examined using a variety of experimental data on glass and advanced structural ceramics in constant stress rate and preload testing at ambient and elevated temperatures. The data fit to the relation of strength versus the log of the stress rate was very reasonable for most of the materials. Also, the preloading technique was determined equally applicable to the case of slow-crack-growth (SCG) parameter n greater than 30 for both the power-law and exponential formulations. The major limitation in the exponential crack-velocity formulation, however, was that the inert strength of a material must be known a priori to evaluate the important SCG parameter n, a significant drawback as compared with the conventional power-law crack-velocity formulation.

  9. Slow Crack Growth of Brittle Materials With Exponential Crack-Velocity Formulation. Part 3; Constant Stress and Cyclic Stress Experiments

    NASA Technical Reports Server (NTRS)

    Choi, Sung R.; Nemeth, Noel N.; Gyekenyesi, John P.

    2002-01-01

    The previously determined life prediction analysis based on an exponential crack-velocity formulation was examined using a variety of experimental data on advanced structural ceramics tested under constant stress and cyclic stress loading at ambient and elevated temperatures. The data fit to the relation between the time to failure and applied stress (or maximum applied stress in cyclic loading) was very reasonable for most of the materials studied. It was also found that life prediction for cyclic stress loading from data of constant stress loading in the exponential formulation was in good agreement with the experimental data, resulting in a similar degree of accuracy as compared with the power-law formulation. The major limitation in the exponential crack-velocity formulation, however, was that the inert strength of a material must be known a priori to evaluate the important slow-crack-growth (SCG) parameter n, a significant drawback as compared with the conventional power-law crack-velocity formulation.

  10. Finite amplitude folding: transition from exponential to layer length controlled growth

    NASA Astrophysics Data System (ADS)

    Schmalholz, Stefan M.; Podladchikov, Yuri Yu.

    2000-06-01

    A new finite amplitude theory of folding has been developed by the combined application of analytical, asymptotic and numerical methods. The existing linear folding theory has been improved by considering nonlinear weakening of membrane stresses, which is caused by the stretching of the competent layer during folding. The resulting theory is simple and accurate for finite amplitude folding and is not restricted to infinitesimal amplitudes, as is the classical linear theory of folding. Two folding modes relevant to most natural settings were considered: (i) both membrane and fiber stresses are viscous during folding (the 'viscous' mode); (ii) membrane stresses are viscous whereas fiber stresses are elastic (the 'viscoelastic' mode). For these two modes, the new theory provided a nonlinear, ordinary differential equation for fold amplification during shortening and an estimate for crossover amplitude and strain where the linear theory breaks down. A new analytical relationship for amplitude versus strain was derived for strains much larger than the crossover strain. The new relationship agrees well with complete 2D numerical solutions for up to threefold shortening, whereas the exponential solution predicted by the linear theory is inaccurate by orders of magnitude for strains larger than the crossover value. Analysis of the crossover strain and amplitude as a function of the controlling parameters demonstrates that the linear theory is only applicable for a small range of amplitudes and strains. This renders unreliable the large strain prediction of wavelength selection based on the linear theory, especially for folding at high competence contrasts. To resolve this problem, the new finite amplitude theory is used to calculate the evolution of the growth rate spectra during progressive folding. The growth rate spectra exhibited splitting of a single maximum (predicted by the linear theory) into two maxima at large strains. This bifurcation occurred for both

  11. Finite amplitude folding: transition from exponential to layer length controlled growth

    NASA Astrophysics Data System (ADS)

    Schmalholz, Stefan M.; Podladchikov, Yuri Yu.

    2000-09-01

    A new finite amplitude theory of folding has been developed by the combined application of analytical, asymptotic and numerical methods. The existing linear folding theory has been improved by considering nonlinear weakening of membrane stresses, which is caused by the stretching of the competent layer during folding. The resulting theory is simple and accurate for finite amplitude folding and is not restricted to infinitesimal amplitudes, as is the classical linear theory of folding. Two folding modes relevant to most natural settings were considered: (i) both membrane and fiber stresses are viscous during folding (the 'viscous' mode); (ii) membrane stresses are viscous whereas fiber stresses are elastic (the 'viscoelastic' mode). For these two modes, the new theory provided a nonlinear, ordinary differential equation for fold amplification during shortening and an estimate for crossover amplitude and strain where the linear theory breaks down. A new analytical relationship for amplitude versus strain was derived for strains much larger than the crossover strain. The new relationship agrees well with complete 2D numerical solutions for up to threefold shortening, whereas the exponential solution predicted by the linear theory is inaccurate by orders of magnitude for strains larger than the crossover value. Analysis of the crossover strain and amplitude as a function of the controlling parameters demonstrates that the linear theory is only applicable for a small range of amplitudes and strains. This renders unreliable the large strain prediction of wavelength selection based on the linear theory, especially for folding at high competence contrasts. To resolve this problem, the new finite amplitude theory is used to calculate the evolution of the growth rate spectra during progressive folding. The growth rate spectra exhibited splitting of a single maximum (predicted by the linear theory) into two maxima at large strains. This bifurcation occurred for both

  12. Domain Growth Kinetics in Stratifying Foam Films

    NASA Astrophysics Data System (ADS)

    Zhang, Yiran; Sharma, Vivek

    2015-03-01

    Baking bread, brewing cappuccino, pouring beer, washing dishes, shaving, shampooing, whipping eggs and blowing bubbles all involve creation of aqueous foam films. Typical foam films consist of two surfactant-laden surfaces that are μ 5 nm - 10 micron apart. Sandwiched between these interfacial layers is a fluid that drains primarily under the influence of viscous and interfacial forces, including disjoining pressure. Interestingly, for certain low molecular weight surfactants, a layered ordering of micelles inside the foam films (thickness <100 nm) leads to a stepwise thinning phenomena called stratification. We experimentally elucidate the influence of these different driving forces, and confinement on drainage kinetics of horizontal stratifying foam films. Thinner, darker domains spontaneously grow within foam films. Quantitative characterization of domain growth visualized in a using Scheludko-type thin film cell and a theoretical model based on lubrication analysis, provide critical insights into hydrodynamics of thin foam films, and the strength and nature of surface forces, including supramolecular oscillatory structural forces.

  13. Determining the Kinetic Parameters Characteristic of Microalgal Growth.

    ERIC Educational Resources Information Center

    Martinez Sancho, Maria Eugenie; And Others

    1991-01-01

    An activity in which students obtain a growth curve for algae, identify the exponential and linear growth phases, and calculate the parameters which characterize both phases is described. The procedure, a list of required materials, experimental conditions, analytical technique, and a discussion of the interpretations of individual results are…

  14. Domain growth kinetics in stratifying foam films

    NASA Astrophysics Data System (ADS)

    Zhang, Yiran; Sharma, Vivek

    2015-11-01

    Baking bread, brewing cappuccino, pouring beer, washing dishes, shaving, shampooing, whipping eggs and blowing bubbles all involve creation of aqueous foam films. Typical foam films consist of two surfactant-laden surfaces that are ~ 5 nm - 10 micron apart. Sandwiched between these interfacial layers is a fluid that drains primarily under the influence of viscous and interfacial forces, including disjoining pressure. Interestingly, a layered ordering of micelles inside the foam films (thickness <100 nm) leads to a stepwise thinning phenomena called stratification, which results in a thickness-dependent variation in reflected light intensity, visualized as progressively darker shades of gray. Thinner, darker domains spontaneously grow within foam films. We show that the domain expansion dynamics exhibit two distinct growth regimes with characteristic scaling laws. Though several studies have focused on the expansion dynamics of isolated domains that exhibit a diffusion-like scaling, the change in expansion kinetics observed after domains contact with the Plateau border has not been reported and analyzed before.

  15. Large-scale epitaxial growth kinetics of graphene: A kinetic Monte Carlo study

    SciTech Connect

    Jiang, Huijun; Hou, Zhonghuai

    2015-08-28

    Epitaxial growth via chemical vapor deposition is considered to be the most promising way towards synthesizing large area graphene with high quality. However, it remains a big theoretical challenge to reveal growth kinetics with atomically energetic and large-scale spatial information included. Here, we propose a minimal kinetic Monte Carlo model to address such an issue on an active catalyst surface with graphene/substrate lattice mismatch, which facilitates us to perform large scale simulations of the growth kinetics over two dimensional surface with growth fronts of complex shapes. A geometry-determined large-scale growth mechanism is revealed, where the rate-dominating event is found to be C{sub 1}-attachment for concave growth-front segments and C{sub 5}-attachment for others. This growth mechanism leads to an interesting time-resolved growth behavior which is well consistent with that observed in a recent scanning tunneling microscopy experiment.

  16. Approximate models for the study of exponential changed quantities: Application on the plasma waves growth rate or damping

    SciTech Connect

    Xaplanteris, C. L.; Xaplanteris, L. C.; Leousis, D. P.

    2014-03-15

    Many physical phenomena that concern the research these days are basically complicated because of being multi-parametric. Thus, their study and understanding meets with big if not unsolved obstacles. Such complicated and multi-parametric is the plasmatic state as well, where the plasma and the physical quantities that appear along with it have chaotic behavior. Many of those physical quantities change exponentially and at most times they are stabilized by presenting wavy behavior. Mostly in the transitive state rather than the steady state, the exponentially changing quantities (Growth, Damping etc) depend on each other in most cases. Thus, it is difficult to distinguish the cause from the result. The present paper attempts to help this difficult study and understanding by proposing mathematical exponential models that could relate with the study and understanding of the plasmatic wavy instability behavior. Such instabilities are already detected, understood and presented in previous publications of our laboratory. In other words, our new contribution is the study of the already known plasmatic quantities by using mathematical models (modeling and simulation). These methods are both useful and applicable in the chaotic theory. In addition, our ambition is to also conduct a list of models useful for the study of chaotic problems, such as those that appear into the plasma, starting with this paper's examples.

  17. Determining crystal growth kinetic parameters using optical fibre sensors

    NASA Astrophysics Data System (ADS)

    Boerkamp, M.; Lamb, D. W.; Lye, P. G.

    2012-12-01

    The capability of an 'intrinsic exposed core optical fibre sensor' (IECOFS) as a monitoring device of scale formation has been evaluated. The IECOFS has been used to measure kinetics parameters of calcium carbonate heterogeneous crystal growth such as the activation energy, the crystal growth rate and the induction time. The IECOFS was able to evaluate crystal growth inhibition through the use of chemical inhibitors.

  18. Growth Kinetics of Suspended Microbial Cells: From Single-Substrate-Controlled Growth to Mixed-Substrate Kinetics

    PubMed Central

    Kovárová-Kovar, Karin; Egli, Thomas

    1998-01-01

    Growth kinetics, i.e., the relationship between specific growth rate and the concentration of a substrate, is one of the basic tools in microbiology. However, despite more than half a century of research, many fundamental questions about the validity and application of growth kinetics as observed in the laboratory to environmental growth conditions are still unanswered. For pure cultures growing with single substrates, enormous inconsistencies exist in the growth kinetic data reported. The low quality of experimental data has so far hampered the comparison and validation of the different growth models proposed, and only recently have data collected from nutrient-controlled chemostat cultures allowed us to compare different kinetic models on a statistical basis. The problems are mainly due to (i) the analytical difficulty in measuring substrates at growth-controlling concentrations and (ii) the fact that during a kinetic experiment, particularly in batch systems, microorganisms alter their kinetic properties because of adaptation to the changing environment. For example, for Escherichia coli growing with glucose, a physiological long-term adaptation results in a change in KS for glucose from some 5 mg liter−1 to ca. 30 μg liter−1. The data suggest that a dilemma exists, namely, that either “intrinsic” KS (under substrate-controlled conditions in chemostat culture) or μmax (under substrate-excess conditions in batch culture) can be measured but both cannot be determined at the same time. The above-described conventional growth kinetics derived from single-substrate-controlled laboratory experiments have invariably been used for describing both growth and substrate utilization in ecosystems. However, in nature, microbial cells are exposed to a wide spectrum of potential substrates, many of which they utilize simultaneously (in particular carbon sources). The kinetic data available to date for growth of pure cultures in carbon-controlled continuous culture

  19. How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?

    PubMed Central

    Stadler, Tanja; Vaughan, Timothy G.; Gavryushkin, Alex; Guindon, Stephane; Kühnert, Denise; Leventhal, Gabriel E.; Drummond, Alexei J.

    2015-01-01

    One of the central objectives in the field of phylodynamics is the quantification of population dynamic processes using genetic sequence data or in some cases phenotypic data. Phylodynamics has been successfully applied to many different processes, such as the spread of infectious diseases, within-host evolution of a pathogen, macroevolution and even language evolution. Phylodynamic analysis requires a probability distribution on phylogenetic trees spanned by the genetic data. Because such a probability distribution is not available for many common stochastic population dynamic processes, coalescent-based approximations assuming deterministic population size changes are widely employed. Key to many population dynamic models, in particular epidemiological models, is a period of exponential population growth during the initial phase. Here, we show that the coalescent does not well approximate stochastic exponential population growth, which is typically modelled by a birth–death process. We demonstrate that introducing demographic stochasticity into the population size function of the coalescent improves the approximation for values of R0 close to 1, but substantial differences remain for large R0. In addition, the computational advantage of using an approximation over exact models vanishes when introducing such demographic stochasticity. These results highlight that we need to increase efforts to develop phylodynamic tools that correctly account for the stochasticity of population dynamic models for inference. PMID:25876846

  20. Lack of synchronization between iron uptake and cell growth leads to iron overload in Saccharomyces cerevisiae during post-exponential growth modes

    PubMed Central

    Park, Jinkyu; McCormick, Sean P.; Chakrabarti, Mrinmoy; Lindahl, Paul A.

    2014-01-01

    Fermenting cells growing exponentially on rich (YPAD) medium transitioned to a slow-growing state as glucose levels declined and their metabolism shifted to respiration. During exponential growth, Fe import and cell growth rates were matched, affording an approximately invariant cellular Fe concentration. During the transitionary period, the high-affinity Fe import rate declined slower than the cell growth rate declined, causing Fe to accumulate, initially as FeIII oxyhydroxide nanoparticles but eventually as mitochondrial and vacuolar Fe. Once in slow-growth mode, Fe import and cell growth rates were again matched, and the cellular Fe concentration was again approximately invariant. Fermenting cells grown on minimal medium (MM) grew more slowly during exponential phase and transitioned to a true stationary state as glucose levels declined. The Fe concentration of MM cells that just entered stationary state was similar to that of YPAD cells, but MM cells continued to accumulate Fe in stationary state. Fe initially accumulated as nanoparticles and high-spin FeII species, but vacuolar FeIII also eventually accumulated. Surprisingly, Fe-packed 5-day-old MM cells suffered no more ROS damage than younger cells, suggesting that Fe concentration alone does not accurately predict the extent of ROS damage. The mode and rate of growth at the time of harvesting dramatically affected cellular Fe content. A mathematical model of Fe metabolism in a growing cell was developed. The model included Fe import via a regulated high-affinity pathway and an unregulated low-affinity pathway. Fe import from the cytosol into vacuoles and mitochondria, and nanoparticle formation were also included. The model captured essential trafficking behavior, demonstrating that cells regulate Fe import in accordance with their overall growth rate and that they misregulate Fe import when nanoparticles accumulate. The lack of regulation of Fe in yeast is perhaps unique compared to the tight regulation of

  1. A new mechanistic growth model for simultaneous determination of lag phase duration and exponential growth rate and a new Belehdradek-type model for evaluating the effect of temperature on growth rate

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A new mechanistic growth model was developed to describe microbial growth under isothermal conditions. The new mathematical model was derived from the basic observation of bacterial growth that may include lag, exponential, and stationary phases. With this model, the lag phase duration and exponen...

  2. Kinetics of growth and caffeine demethylase production of Pseudomonas sp. in bioreactor.

    PubMed

    Gummadi, Sathyanarayana N; Santhosh, Devarai

    2010-09-01

    The effect of various initial caffeine concentrations on growth and caffeine demethylase production by Pseudomonas sp. was studied in bioreactor. At initial concentration of 6.5 g l(-1) caffeine, Pseudomonas sp. showed a maximum specific growth rate of 0.2 h(-1), maximum degradation rate of 1.1 g h(-1), and caffeine demethylase activity of 18,762 U g CDW(-1) (CDW: cell dry weight). Caffeine degradation rate was 25 times higher in bioreactor than in shake flask. For the first time, we show highest degradation of 75 g caffeine (initial concentration 20 g l(-1)) in 120 h, suggesting that the tested strain has potential for successful bioprocess for caffeine degradation. Growth kinetics showed substrate inhibition phenomenon. Various substrate inhibition models were fitted to the kinetic data, amongst which the double-exponential (R(2) = 0.94), Luong (R(2) = 0.92), and Yano and Koga 2 (R(2) = 0.94) models were found to be the best. The Luedeking-Piret model showed that caffeine demethylase production kinetics was growth related. This is the first report on production of high levels of caffeine demethylase in batch bioreactor with faster degradation rate and high tolerance to caffeine, hence clearly suggesting that Pseudomonas sp. used in this study is a potential biocatalyst for industrial decaffeination. PMID:20495941

  3. Production of Thiol Species From An Exponential Growth Diatom Under Copper Exposure

    NASA Astrophysics Data System (ADS)

    Tang, D.; Shafer, M. M.; Karner, D. A.; Armstrong, D. E.; Schauer, J.

    2003-12-01

    The intracellar induction of phytochelatins is a well documented response of eukaryotic microorganisms to aqueous metal exposure. The extracellular release of thiolic compounds from algal species has been observed; and in some cases, this release can contribute a significant fraction of the uncharacterized metal-complexing ligands. Glutathione (GSH) or cysteine is among the detectable thiols excreted. A quantitative assessment of the excretion of thiols from algae cells into growth media is needed to assess the significance of biogenic-thiols as a source of strong ligands in natural waters and as a "forgotten" route in sulfur biogeochemical cycle. Unbuffered growth media (e.g., without adding complexing ligand such as EDTA) have only rarely been used to study the possible release of metal-complexing ligands from algal species, and the ligand titration techniques used varied considerably. The majority of culture studies have applied metal-buffered media. A direct comparison of released ligands under buffered and unbuffered conditions is lacking, partially due to the inherent difficulties of the titration methods applied. Using HPLC with fluorescence detection of thiol-monobromobimane derivatives, we were able to follow the dynamic change of GSH released in both media types during algal growth: (1) the cell quotas for thiols and pigments varied (mostly decreases) with growth time. Therefore, pigment-normalized cellular thiol concentrations were more or less conservative. (2) GSH was released into both the EDTA-buffered and -unbuffered growth media at similar concentrations. (3) at similar available Cu concentrations, EDTA possibly enhanced, rather than hindered, the release of GSH.

  4. Growth of Listeria monocytogenes in Salmon Roe - a kinetic analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to investigate the growth kinetics of Listeria monocytogenes in unsalted and salted (3%) salmon roe. Growth curves, developed using inoculated samples incubated at constant temperatures between 5 and 30 degrees C, were analyzed by curve-fitting to the Huang and Baran...

  5. Controlled positions and kinetic analysis of spontaneous tin whisker growth

    NASA Astrophysics Data System (ADS)

    Su, Chien-Hao; Chen, Hao; Lee, Hsin-Yi; Wu, Albert T.

    2011-09-01

    This study achieved controlling the positions of spontaneous growth of tin whiskers. We surmounted the unpredictable growing nature of such whiskers and performed accurately quantitative analyses of the growth kinetics and yielded precise measurement of the growth rate. Furthermore, using synchrotron radiation x-ray, this study determined the stress variations in conjunction with whisker growth that fitted appropriately to the model. Accordingly, the results could address the debate held for decades and prove that forming a surface oxide layer is one of the required and necessary conditions for controlling the positions of spontaneous growth of tin whiskers.

  6. Multiple substrate growth kinetics of Leptothrix discophora SP-6.

    PubMed

    Yurt, Nurdan; Sears, John; Lewandowski, Zbigniew

    2002-01-01

    The growth parameters of Leptothrix discophora SP-6 were quantified on the basis of the steady-state concentrations and utilization rates of pyruvate, dissolved oxygen, and concentration of microorganisms in a chemostat operated at 25 degrees C, pH 7.2, and an agitation rate of 350 rpm. The results showed that the microbial growth was limited by both pyruvate and dissolved oxygen. A combined growth kinetics model using Monod growth kinetics for pyruvate and Tessier growth kinetics for oxygen showed the best correlation with the experimental data when analyzed using an interactive multiple substrate model. The growth kinetics parameters and the respective confidence limits, estimated using the Monte Carlo simulation, were mu(max) = 0.576 +/- 0.021 h(-1), K(sMp) = 38.81 +/- 4.24 mg L(-1), K(sTo) = 0.39 +/- 0.04 mg L(-1), Y(X/p) = 0.150 (mg microorganism mg(-1) pyruvate), Y(X/o) = 1.24 (mg microorganism mg(-1) oxygen), the maintenance factors for pyruvate and oxygen were m(p) = 0.129 (mg pyruvate consumed mg(-1) microorganism h(-1)) and m(o) = 0.076 (mg oxygen consumed mg(-1) microorganism h(-1)), respectively. PMID:12363350

  7. Growth and Nitrogen Uptake Kinetics in Cultured Prorocentrum donghaiense

    PubMed Central

    Hu, Zhangxi; Duan, Shunshan; Xu, Ning; Mulholland, Margaret R.

    2014-01-01

    We compared growth kinetics of Prorocentrum donghaiense cultures on different nitrogen (N) compounds including nitrate (NO3−), ammonium (NH4+), urea, glutamic acid (glu), dialanine (diala) and cyanate. P. donghaiense exhibited standard Monod-type growth kinetics over a range of N concentraions (0.5–500 μmol N L−1 for NO3− and NH4+, 0.5–50 μmol N L−1 for urea, 0.5–100 μmol N L−1 for glu and cyanate, and 0.5–200 μmol N L−1 for diala) for all of the N compounds tested. Cultures grown on glu and urea had the highest maximum growth rates (μm, 1.51±0.06 d−1 and 1.50±0.05 d−1, respectively). However, cultures grown on cyanate, NO3−, and NH4+ had lower half saturation constants (Kμ, 0.28–0.51 μmol N L−1). N uptake kinetics were measured in NO3−-deplete and -replete batch cultures of P. donghaiense. In NO3−-deplete batch cultures, P. donghaiense exhibited Michaelis-Menten type uptake kinetics for NO3−, NH4+, urea and algal amino acids; uptake was saturated at or below 50 μmol N L−1. In NO3−-replete batch cultures, NH4+, urea, and algal amino acid uptake kinetics were similar to those measured in NO3−-deplete batch cultures. Together, our results demonstrate that P. donghaiense can grow well on a variety of N sources, and exhibits similar uptake kinetics under both nutrient replete and deplete conditions. This may be an important factor facilitating their growth during bloom initiation and development in N-enriched estuaries where many algae compete for bioavailable N and the nutrient environment changes as a result of algal growth. PMID:24710151

  8. Kinetic model of particle-inhibited grain growth

    NASA Astrophysics Data System (ADS)

    Thompson, Gary Scott

    The effects of second phase particles on matrix grain growth kinetics were investigated using Al2O3-SiC as a model system. In particular, the validity of the conclusion drawn from a previous kinetic analysis that the kinetics of particle-inhibited grain growth in Al2 O3-SiC samples with an intermediate volume fraction of second phase could be well quantified by a modified-Zener model was investigated. A critical analysis of assumptions made during the previous kinetic analysis revealed oversimplifications which affect the validity of the conclusion. Specifically, the degree of interaction between particles and grain boundaries was assumed to be independent of the mean second phase particle size and size distribution. In contrast, current measurements indicate that the degree of interaction in Al2O3-SiC is dependent on these parameters. An improved kinetic model for particle-inhibited grain growth in Al 2O3-SiC was developed using a modified-Zener approach. The comparison of model predictions with experimental grain growth data indicated that significant discrepancies (as much as 4--5 orders of magnitude) existed. Based on this, it was concluded that particles had a much more significant effect on grain growth kinetics than that caused by a simple reduction of the boundary driving force due to the removal of boundary area. Consequently, it was also concluded that the conclusion drawn from the earlier kinetic analysis regarding the validity of a modified-Zener model was incorrect. Discrepancies between model and experiment were found to be the result of a significant decrease in experimental growth rate constant not predicted by the model. Possible physical mechanisms for such a decrease were investigated. The investigation of a small amount of SiO2 on grain growth in Al2O3 indicated that the decrease was not the result of a decrease in grain boundary mobility due to impurity contamination by particles. By process of elimination and based on previous observations

  9. Metastable Solution Thermodynamic Properties and Crystal Growth Kinetics

    NASA Technical Reports Server (NTRS)

    Kim, Soojin; Myerson, Allan S.

    1996-01-01

    The crystal growth rates of NH4H2PO4, KH2PO4, (NH4)2SO4, KAl(SO4)2 central dot 12H2O, NaCl, and glycine and the nucleation rates of KBr, KCl, NaBr central dot 2H2O, (NH4)2Cl, and (NH4)2SO4 were expressed in terms of the fundamental driving force of crystallization calculated from the activity of supersaturated solutions. The kinetic parameters were compared with those from the commonly used kinetic expression based on the concentration difference. From the viewpoint of thermodynamics, rate expressions based on the chemical potential difference provide accurate kinetic representation over a broad range of supersaturation. The rates estimated using the expression based on the concentration difference coincide with the true rates of crystallization only in the concentration range of low supersaturation and deviate from the true kinetics as the supersaturation increases.

  10. Kinetics of laser-assisted carbon nanotube growth.

    PubMed

    van de Burgt, Y; Bellouard, Y; Mandamparambil, R

    2014-03-21

    Laser-assisted chemical vapour deposition (CVD) growth is an attractive mask-less process for growing locally aligned carbon nanotubes (CNTs) in selected places on temperature sensitive substrates. The nature of the localized process results in fast carbon nanotube growth with high experimental throughput. Here, we report on the detailed investigation of growth kinetics related to physical and chemical process characteristics. Specifically, the growth kinetics is investigated by monitoring the dynamical changes in reflected laser beam intensity during growth. Benefiting from the fast growth and high experimental throughput, we investigate a wide range of experimental conditions and propose several growth regimes. Rate-limiting steps are determined using rate equations linked to the proposed growth regimes, which are further characterized by Raman spectroscopy and Scanning Electron Microscopy (SEM), therefore directly linking growth regimes to the structural quality of the CNTs. Activation energies for the different regimes are found to be in the range of 0.3-0.8 eV. PMID:24481313

  11. Grain boundary curvature and grain growth kinetics with particle pinning

    NASA Astrophysics Data System (ADS)

    Shahandeh, Sina; Militzer, Matthias

    2013-08-01

    Second-phase particles are used extensively in design of polycrystalline materials to control the grain size. According to Zener's theory, a distribution of particles creates a pinning pressure on a moving grain boundary. As a result, a limiting grain size is observed, but the effect of pinning on the detail of grain growth kinetics is less known. The influence of the particles on the microstructure occurs in multiple length scales, established by particle radius and the grain size. In this article, we use a meso-scale phase-field model that simulates grain growth in the presence of a uniform pinning pressure. The curvature of the grain boundary network is measured to determine the driving pressure of grain growth in 2D and 3D systems. It was observed that the grain growth continues, even under conditions where the average driving pressure is smaller than the pinning pressure. The limiting grain size is reached when the maximum of driving pressure distribution in the structure is equal to the pinning pressure. This results in a limiting grain size, larger than the one predicted by conventional models, and further analysis shows consistency with experimental observations. A physical model is proposed for the kinetics of grain growth using parameters based on the curvature analysis of the grain boundaries. This model can describe the simulated grain growth kinetics.

  12. Kinetics of bacterial growth on chlorinated aliphatic compounds

    SciTech Connect

    Wijngaard, A.J. van den; Wind, R.E.; Janssen, D.B. )

    1993-07-01

    Halogenated aliphatic compounds are frequent constituents of industrial waste gases. Because of the environmental and biological toxic effects of these compounds, there is a growing interest in technologies for their removal. Biological waste gas purification is an option if specialized bacterial strains that use halogenated aliphatics as sole carbon and energy sources can be used. Elimination efficiency of the compounds depends not only on the process technology but on the degradation properties of the bacterial strains. Important aspects of bacterial growth are the Monod half-saturation constant and the maximum growth rate. In this study the kinetic properties of the organisms (Ancylobacter aquaticus AD20 and AD25, Xanthobacter autotrophicus GJ10, Pseudomonas sp. strain AD1) weree measured during growth in continuous cultures and wer compared with the kinetic properties of the first catabolic enzyme involved in the degradation of the growth substrate. The results indicate that the growth of the strains examined followed Monod kinetics. Stains AD20 and GJ10 showed growth rates on DCE somewhat higher than predicted from the amount of haloalkane dehalogenase present in the cells, while strain AD25 was much lower. 33 refs., 3 figs., 4 tabs.

  13. Subdiffusion kinetics of nanoprecipitate growth and destruction in solid solutions

    NASA Astrophysics Data System (ADS)

    Sibatov, R. T.; Svetukhin, V. V.

    2015-06-01

    Based on fractional differential generalizations of the Ham and Aaron-Kotler precipitation models, we study the kinetics of subdiffusion-limited growth and dissolution of new-phase precipitates. We obtain the time dependence of the number of impurities and dimensions of new-phase precipitates. The solutions agree with the Monte Carlo simulation results.

  14. Growth Kinetics and Modeling of ZnO Nanoparticles

    ERIC Educational Resources Information Center

    Hale, Penny S.; Maddox, Leone M.; Shapter, Joe G.; Voelcker, Nico H.; Ford, Michael J.; Waclawik, Eric R.

    2005-01-01

    The technique for producing quantum-sized zinc oxide (ZnO) particles is much safer than a technique that used hydrogen sulfide gas to produce cadmium sulfide and zinc sulfide nanoparticles. A further advantage of this method is the ability to sample the solution over time and hence determine the growth kinetics.

  15. A novel microculture kinetic assay (MiCK assay) for malignant cell growth and chemosensitivity.

    PubMed

    Kravtsov, V D

    1994-01-01

    The THERMOmax microplate reader was adapted for monitoring the growth kinetics of human leukaemic OCI/AML-2 and mouse tumour J-774.1 cell lines in continuous culture. Fluid evaporation from wells, CO2 escape and contamination were prevented by hermetic sealing of the microcultures in wells of a 96-well microplate, thus enabling the cells to grow exponentially for 72 h under the conditions of the incubated microplate reader. For both OCI/AML-2 cells, which grow in suspension, and adherent J-774.1 cells, a linear correlation was demonstrated between the number of unstained cells seeded in a given microplate well and the optical density (OD) of that well. Therefore, the OD/time curve of the culture could be deemed to be its growth curve. By the use of the linear fit equation, the actual number of the cells in the wells was computable at any time point of the assay. In the chemosensitivity test, an inhibitory effect of ARA-C on the growth of the cells could be estimated by viewing of the growth curves plotted on the screen. The maximum kinetic rates (Vmax) of the curves in the control and the ARA-C-treated wells were compared, yielding a growth inhibition index (GII). Comparison of results of the kinetic chemosensitivity assay with those of a [3H]thymidine incorporation assay revealed that the novel assay is suitable for precise quantitation of the cell chemosensitivity, is more informative and has the added technical advantage of performance without recourse to radioactive or chemically hazardous substances. PMID:7833120

  16. Lag Phase Is a Distinct Growth Phase That Prepares Bacteria for Exponential Growth and Involves Transient Metal Accumulation

    PubMed Central

    Rolfe, Matthew D.; Rice, Christopher J.; Lucchini, Sacha; Pin, Carmen; Thompson, Arthur; Cameron, Andrew D. S.; Alston, Mark; Stringer, Michael F.; Betts, Roy P.; Baranyi, József; Peck, Michael W.

    2012-01-01

    Lag phase represents the earliest and most poorly understood stage of the bacterial growth cycle. We developed a reproducible experimental system and conducted functional genomic and physiological analyses of a 2-h lag phase in Salmonella enterica serovar Typhimurium. Adaptation began within 4 min of inoculation into fresh LB medium with the transient expression of genes involved in phosphate uptake. The main lag-phase transcriptional program initiated at 20 min with the upregulation of 945 genes encoding processes such as transcription, translation, iron-sulfur protein assembly, nucleotide metabolism, LPS biosynthesis, and aerobic respiration. ChIP-chip revealed that RNA polymerase was not “poised” upstream of the bacterial genes that are rapidly induced at the beginning of lag phase, suggesting a mechanism that involves de novo partitioning of RNA polymerase to transcribe 522 bacterial genes within 4 min of leaving stationary phase. We used inductively coupled plasma mass spectrometry (ICP-MS) to discover that iron, calcium, and manganese are accumulated by S. Typhimurium during lag phase, while levels of cobalt, nickel, and sodium showed distinct growth-phase-specific patterns. The high concentration of iron during lag phase was associated with transient sensitivity to oxidative stress. The study of lag phase promises to identify the physiological and regulatory processes responsible for adaptation to new environments. PMID:22139505

  17. Growth kinetics of sulfur nanoparticles in aqueous surfactant solutions.

    PubMed

    Chaudhuri, Rajib Ghosh; Paria, Santanu

    2011-02-15

    Sulfur is an important element has many practical applications when present as nanoparticles. Despite the practicable applications, limited studies are available in the literature related to synthesis of sulfur nanoparticles. Growth kinetics of colloidal sulfur particles synthesized from aqueous solutions using different surfactants have been studied here. The effects of different parameters such as reactant concentration, temperature, sonication, types of acids, types of surfactants, and even surfactant concentration are studied on the growth kinetics. Since the reaction rate is fast, particle growth depends on the parameters which affect diffusion of sulfur molecules. There is a linear relationship found among the reactant concentration and the particle coarsening rate constant. The growth kinetics was studied in the presence of different surfactants such as nonionic (poly(oxyethylene) p-tert-octylphenyl ether, TX-100), anionic (sodium dodecylbenzene sulfonate, SDBS), cationic (cetyltrimethyammonium bromide, CTAB) and results show the coarsening constant changes according to the following order: water>TX-100>SDBS>CTAB. The particle growth rate also depends on the surfactant concentration, coarsening rate constant decreases with the increase in surfactant concentration and become constant close to the critical micellar concentration (CMC). The coarsening rate constant also highly depends on the types of acid used as catalyst. PMID:21147482

  18. Growth kinetics of Staphylococcus aureus on Brie and Camembert cheeses.

    PubMed

    Lee, Heeyoung; Kim, Kyungmi; Lee, Soomin; Han, Minkyung; Yoon, Yohan

    2014-05-01

    In this study, we developed mathematical models to describe the growth kinetics of Staphylococcus aureus on natural cheeses. A five-strain mixture of Staph. aureus was inoculated onto 15 g of Brie and Camembert cheeses at 4 log CFU/g. The samples were then stored at 4, 10, 15, 25, and 30 °C for 2-60 d, with a different storage time being used for each temperature. Total bacterial and Staph. aureus cells were enumerated on tryptic soy agar and mannitol salt agar, respectively. The Baranyi model was fitted to the growth data of Staph. aureus to calculate kinetic parameters such as the maximum growth rate in log CFU units (r max; log CFU/g/h) and the lag phase duration (λ; h). The effects of temperature on the square root of r max and on the natural logarithm of λ were modelled in the second stage (secondary model). Independent experimental data (observed data) were compared with prediction and the respective root mean square error compared with the RMSE of the fit on the original data, as a measure of model performance. The total growth of bacteria was observed at 10, 15, 25, and 30 °C on both cheeses. The r max values increased with storage temperature (P<0·05), but a significant effect of storage temperature on λ values was only observed between 4 and 15 °C (P<0·05). The square root model and linear equation were found to be appropriate for description of the effect of storage temperature on growth kinetics (R 2=0·894-0·983). Our results indicate that the models developed in this study should be useful for describing the growth kinetics of Staph. aureus on Brie and Camembert cheeses. PMID:24731395

  19. Growth Morphologies of Wax in the Presence Kinetic Inhibitors

    NASA Astrophysics Data System (ADS)

    Tetervak, Alexander; Hutter, Jeffrey

    2004-03-01

    Kinetic inhibitors are molecules that alter crystal growth rates and morphologies by adsorbing to growth faces. Such species are used in many commercial processes to control microsctructure, and in other cases to prevent crystallization altogether. Despite their importance, the details of their mechanisms are largely unverified. We are studying the effects of such inhibitors on the crystallization of normal alkanes from solution. We find that inhibitors drastically alter the crystal morphology. As in similar systems, we see ``burst growth,'' in which newly formed solid is able to grow faster due to lower inhibitor coverage. Our experiments show several growth morphologies as a function of conditions: a tree-like structure that in some cases forms bands, and spherulites with characteristics very similar to those seen in polymers. Here, we characterize the front morphology as a function of these conditions and compare the results to numerical models that capture the essential growth behavior.

  20. Kinetic Roughening Transition and Energetics of Tetragonal Lysozyme Crystal Growth

    NASA Technical Reports Server (NTRS)

    Gorti, Sridhar; Forsythe, Elizabeth L.; Pusey, Marc L.

    2004-01-01

    Interpretation of lysozyme crystal growth rates using well-established physical theories enabled the discovery of a phenomenon possibly indicative of kinetic roughening. For example, lysozyme crystals grown above a critical supersaturation sigma, (where supersaturation sigma = ln c/c(sub eq), c = the protein concentration and c(sub eq) = the solubility concentration) exhibit microscopically rough surfaces due to the continuous addition of growth units anywhere on the surface of a crystal. The rate of crystal growth, V(sub c), for the continuous growth process is determined by the continuous flux of macromolecules onto a unit area of the crystal surface, a, from a distance, xi, per unit time due to diffusion, and a probability of attachment onto the crystal surface, expressed. Based upon models applied, the energetics of lysozyme crystal growth was determined. The magnitudes of the energy barriers of crystal growth for both the (110) and (101) faces of tetragonal lysozyme crystals are compared. Finally, evidence supportive of the kinetic roughening hypothesis is presented.

  1. The stretching of single poly-ubiquitin molecules: Static versus dynamic disorder in the non-exponential kinetics of chain unfolding

    NASA Astrophysics Data System (ADS)

    Chatterjee, Debarati; Cherayil, Binny J.

    2011-04-01

    Static disorder has recently been implicated in the non-exponential kinetics of the unfolding of single molecules of poly-ubiquitin under a constant force [Kuo, Garcia-Manyes, Li, Barel, Lu, Berne, Urbakh, Klafter, and Fernández, Proc. Natl. Acad. Sci. U.S.A. 107, 11336 (2010), 10.1073/pnas.1006517107]. In the present paper, it is suggested that dynamic disorder may provide a plausible, alternative description of the experimental observations. This suggestion is made on the basis of a model in which the barrier to chain unfolding is assumed to be modulated by a control parameter r that evolves in a parabolic potential under the action of fractional Gaussian noise according to a generalized Langevin equation. The treatment of dynamic disorder within this model is pursued using Zwanzig's indirect approach to noise averaging [Acc. Chem. Res. 23, 148 (1990)]. In conjunction with a self-consistent closure scheme developed by Wilemski and Fixman [J. Chem. Phys. 58, 4009 (1973), 10.1063/1.1679757; ibid. 60, 866 (1974), 10.1063/1.1681162], this approach eventually leads to an expression for the chain unfolding probability that can be made to fit the corresponding experimental data very closely.

  2. Coalescence kinetics under the action of alternative grain growth mechanisms

    SciTech Connect

    Gubanov, P. Yu. Maksimov, I. L.

    2008-01-15

    The coalescence process is considered for the case where the prevailing grain growth mechanism is block-to-block diffusion, during which the motion of atoms in a solution occurs in the form of diffusion flux along the block boundaries. Numerical and analytical investigation of the coalescence kinetics in a homogeneous supersaturated solution is performed with allowance for the finite maximum grain size, and the time evolution of the size distribution function of new-phase grains is theoretically described. Possible transition regimes arising during coalescence at a change in the dominant grain growth mechanism are considered.

  3. Growth morphologies of wax in the presence of kinetic inhibitors

    NASA Astrophysics Data System (ADS)

    Tetervak, Alexander A.

    Driven by the need to prevent crystallization of normal alkanes from diesel fuels in cold climates, the petroleum industry has developed additives to slow the growth of these crystals and alter their morphologies. Although the utility of these kinetic inhibitors has been well demonstrated in the field, few studies have directly monitored their effect at microscopic morphology, and the mechanisms by which they act remain poorly understood. Here we present a study of the effects of such additives on the crystallization of long-chain n-alkanes from solution. The additives change the growth morphology from plate-like crystals to a microcrystalline mesh. When we impose a front velocity by moving the sample through a temperature gradient, the mesh growth may form a macroscopic banded pattern and also exhibit a burst-crystallization behavior. In this study, we characterize these crystallization phenomena and also two growth models: a continuum model that demonstrates the essential behavior of the banded crystallization, and a simple qualitative cellular automata model that captures basics of the burst-crystallization process. Keywords: solidification; mesh crystallization; kinetic inhibitor; burst growth.

  4. Role of Transport and Kinetics in Growth of Renal Stones

    NASA Technical Reports Server (NTRS)

    Kassemi, Mohammad; Iskovitz, Ilana

    2012-01-01

    Renal stone disease is not only a concern on earth but could conceivably pose as a serious risk to the astronauts health and safety in Space. In this paper, a combined transport-kinetics model for growth of calcium oxalate crystals is presented. The model is used to parametrically investigate the growth of renal calculi in urine with a focus on the coupled effects of transport and surface reaction on the ionic concentrations at the surface of the crystal and their impact on the resulting growth rates. It is shown that under nominal conditions of low solution supersaturation and low Damkohler number that typically exist on Earth, the surface concentrations of calcium and oxalate approach their bulk solution values in the urine and the growth rate is most likely limited by the surface reaction kinetics. But for higher solution supersaturations and larger Damkohler numbers that may be prevalent in the microgravity environment of Space, the calcium and oxalate surface concentrations tend to shift more towards their equilibrium or saturation values and thus the growth process may be limited by the transport through the medium. Furthermore, parametric numerical studies suggest that changes to the renal biochemistry of astronauts due in space may promote development of renal calculi during long duration space expeditions.

  5. Computer Simulation of Grain Growth Kinetics with Solute Drag

    SciTech Connect

    Chen, L.; Chen, S.P.; Fan, D.

    1998-12-23

    The effects of solute dragon grain growth kinetics were studied in two dimensional (2-D) computer simulations by using a diffuse-interface field model. It is shown that, in the low velocity / low driving force regime, the velocity of a grain boundary motion departs from a linear relation with driving force (curvature) with solute drag. The nonlinear relation of migration velocity and driving force comes from the dependence of grain boundary energy and width on the curvature. The growth exponent m of power growth law for a polycrystalline system is affected by the segregation of solutes to grain boundaries. With the solute drag, the growth exponent m can take any value between 2 and 3 depending on the ratio of lattice diffusion to grain boundary mobility. The grain size and topological distributions are unaffected by solute drag, which are the same as those in a pure system.

  6. Grain Growth Kinetics of BaTiO3 Nanocrystals During Calcining Process

    NASA Astrophysics Data System (ADS)

    Song, Xiao-lan; He, Xi; Yang, Hai-ping; Qu, Yi-xin; Qiu, Guan-zhou

    2008-06-01

    BaTiO3 nanocrystals were synthesized by sol-gel method using barium acetate (Ba(CH3COO)2) and tetra-butyl titanate (Ti(OC4H9)4) as raw materials. Xerogel precursors and products were characterized by means of thermogravimetric/differential scanning calorimetry (TG/DSC), X-ray diffraction (XRD) and transmission electron microscope (TEM). The influence of the calcination temperature and duration on the lattice constant, the lattice distortion, and the grain size of BaTiO3 nanocrystals was discussed based on the XRD results. The grain growth kinetics of BaTiO3 nanocrystals during the calcination process were simulated with a conventional grain growth model which only takes into account diffusion, and an isothermal model proposed by Qu and Song, which takes into account both diffusion and surface reactions. Using these models, the pre-exponential factor and the activation energy of the rate constant were estimated. The simulation results indicate that the isothermal model is superior to the conventional one in describing the grain growth process, implying that both diffusion and surface reactions play important roles in the grain growth process.

  7. Diverse Growth Kinetics in Suspension Culture of a Model Eukaryote Dictyostelium discoideum, Confirmation of Lagless Growth

    NASA Astrophysics Data System (ADS)

    Franck, Carl; Zhou, Xaio-Qiao S.; Deshmukh, Amrish; Bogart, Elijah; Lau, Sharon; Daie, Kayvon; Bae, Albert

    2010-03-01

    In recent work we explored the notion that the transition between slow and fast growth, the lag-log transition, with increasing density seen in shaken cell culture represents a collective effect. (Phys. Rev. E 77, 041905 (2008)). We reported preliminary observations in which the lag phase was apparently missing. Here, we present significantly more measurements than in our original work as well as increased sensitivity at low densities. We confirm that instances of nearly exponential (``log'') growth do in fact appear, but more frequently, we find evidence of lagging. The degree of lagging fluctuates significantly from run to run, in contrast to our earlier observations and theory, but in all cases exponential growth is established with increasing density once the range of 10^4 to 10^5 cells/ml is reached. We present evidence against two natural explanations for these fluctuations: 1) a mixture of strains which have different growth phenotypes or 2) a single strain variation due to an epigenetic switch which can be set to the low growth state by subjecting cells to high density environments. The appearance of such growth variations has considerable practical significance and suggests that there is an additional dynamical variable besides density in play.

  8. Morphology and Growth Kinetics of Straight and Kinked Tin Whiskers

    NASA Astrophysics Data System (ADS)

    Susan, Donald; Michael, Joseph; Grant, Richard P.; McKenzie, Bonnie; Yelton, W. Graham

    2013-03-01

    Time-lapse SEM studies of Sn whiskers were conducted to estimate growth kinetics and document whisker morphologies. For straight whiskers, growth rates of 3 to 4 microns per day were measured at room temperature. Two types of kinked whiskers were observed. For Type A kinks, the original growth segment spatial orientation remains unchanged, there are no other changes in morphology or diameter, and growth continues. For Type B kinks, the spatial orientation of the original segment changes and it appears that the whisker bends over. Whiskers with Type B kinks show changes in morphology and diameter at the base, indicating grain boundary motion in the film, which eliminates the conditions suitable for long-term whisker growth. To estimate the errors in the whisker growth measurements, a technique is presented to correct for SEM projection effects. With this technique, the actual growth angles and lengths of a large number of whiskers were collected. It was found that most whiskers grow at moderate or shallow angles with respect to the surface; few straight whiskers grow nearly normal to the surface. In addition, there is no simple correlation between growth angles and lengths for whiskers observed over an approximate 2-year period.

  9. Calcite growth kinetics: Modeling the effect of solution stoichiometry

    NASA Astrophysics Data System (ADS)

    Wolthers, Mariëtte; Nehrke, Gernot; Gustafsson, Jon Petter; Van Cappellen, Philippe

    2012-01-01

    Until recently the influence of solution stoichiometry on calcite crystal growth kinetics has attracted little attention, despite the fact that in most aqueous environments calcite precipitates from non-stoichiometric solution. In order to account for the dependence of the calcite crystal growth rate on the cation to anion ratio in solution, we extend the growth model for binary symmetrical electrolyte crystals of Zhang and Nancollas (1998) by combining it with the surface complexation model for the chemical structure of the calcite-aqueous solution interface of Wolthers et al. (2008). To maintain crystal stoichiometry, the rate of attachment of calcium ions to step edges is assumed to equal the rate of attachment of carbonate plus bicarbonate ions. The model parameters are optimized by fitting the model to the step velocities obtained previously by atomic force microscopy (AFM, Teng et al., 2000; Stack and Grantham, 2010). A variable surface roughness factor is introduced in order to reconcile the new process-based growth model with bulk precipitation rates measured in seeded calcite growth experiments. For practical applications, we further present empirical parabolic rate equations fitted to bulk growth rates of calcite in common background electrolytes and in artificial seawater-type solutions. Both the process-based and empirical growth rate equations agree with measured calcite growth rates over broad ranges of ionic strength, pH, solution stoichiometry and degree of supersaturation.

  10. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli.

    PubMed Central

    Sledjeski, D D; Gupta, A; Gottesman, S

    1996-01-01

    dsrA encodes a small, untranslated RNA. When over-expressed, DsrA antagonizes the H-NS-mediated silencing of numerous promoters. Cells devoid of DsrA grow normally and show little change in the expression of a number of H-NS-silenced genes. Expression of a transcriptional fusion of lacZ to dsrB, the gene next to dsrA, is significantly lower in cells carrying mutations in dsrA. All expression of beta-galactosidase from the dsrB::lacZ fusion is also dependent on the stationary phase sigma factor, RpoS. DsrA RNA was found to regulate dsrB::lacZ indirectly, by modulating RpoS synthesis. Levels of RpoS protein are substantially lower in a dsrA mutant, both in stationary and exponential phase cells. Mutations in dsrA decrease the expression of an RpoS::LacZ translational fusion, but not a transcriptional fusion, suggesting that DsrA is acting after transcription initiation. While RpoS expression is very low in exponential phase at temperatures of 30 degrees C and above, at 20 degrees C there is substantial synthesis of RpoS during exponential growth, all dependent on DsrA RNA. dsrA expression is also increased at low temperatures. These results suggest a new role for RpoS during exponential growth at low temperatures, mediated by DsrA. Images PMID:8670904

  11. Analysis of Network Topologies Underlying Ethylene Growth Response Kinetics.

    PubMed

    Prescott, Aaron M; McCollough, Forest W; Eldreth, Bryan L; Binder, Brad M; Abel, Steven M

    2016-01-01

    Most models for ethylene signaling involve a linear pathway. However, measurements of seedling growth kinetics when ethylene is applied and removed have resulted in more complex network models that include coherent feedforward, negative feedback, and positive feedback motifs. The dynamical responses of the proposed networks have not been explored in a quantitative manner. Here, we explore (i) whether any of the proposed models are capable of producing growth-response behaviors consistent with experimental observations and (ii) what mechanistic roles various parts of the network topologies play in ethylene signaling. To address this, we used computational methods to explore two general network topologies: The first contains a coherent feedforward loop that inhibits growth and a negative feedback from growth onto itself (CFF/NFB). In the second, ethylene promotes the cleavage of EIN2, with the product of the cleavage inhibiting growth and promoting the production of EIN2 through a positive feedback loop (PFB). Since few network parameters for ethylene signaling are known in detail, we used an evolutionary algorithm to explore sets of parameters that produce behaviors similar to experimental growth response kinetics of both wildtype and mutant seedlings. We generated a library of parameter sets by independently running the evolutionary algorithm many times. Both network topologies produce behavior consistent with experimental observations, and analysis of the parameter sets allows us to identify important network interactions and parameter constraints. We additionally screened these parameter sets for growth recovery in the presence of sub-saturating ethylene doses, which is an experimentally-observed property that emerges in some of the evolved parameter sets. Finally, we probed simplified networks maintaining key features of the CFF/NFB and PFB topologies. From this, we verified observations drawn from the larger networks about mechanisms underlying ethylene

  12. Analysis of Network Topologies Underlying Ethylene Growth Response Kinetics

    PubMed Central

    Prescott, Aaron M.; McCollough, Forest W.; Eldreth, Bryan L.; Binder, Brad M.; Abel, Steven M.

    2016-01-01

    Most models for ethylene signaling involve a linear pathway. However, measurements of seedling growth kinetics when ethylene is applied and removed have resulted in more complex network models that include coherent feedforward, negative feedback, and positive feedback motifs. The dynamical responses of the proposed networks have not been explored in a quantitative manner. Here, we explore (i) whether any of the proposed models are capable of producing growth-response behaviors consistent with experimental observations and (ii) what mechanistic roles various parts of the network topologies play in ethylene signaling. To address this, we used computational methods to explore two general network topologies: The first contains a coherent feedforward loop that inhibits growth and a negative feedback from growth onto itself (CFF/NFB). In the second, ethylene promotes the cleavage of EIN2, with the product of the cleavage inhibiting growth and promoting the production of EIN2 through a positive feedback loop (PFB). Since few network parameters for ethylene signaling are known in detail, we used an evolutionary algorithm to explore sets of parameters that produce behaviors similar to experimental growth response kinetics of both wildtype and mutant seedlings. We generated a library of parameter sets by independently running the evolutionary algorithm many times. Both network topologies produce behavior consistent with experimental observations, and analysis of the parameter sets allows us to identify important network interactions and parameter constraints. We additionally screened these parameter sets for growth recovery in the presence of sub-saturating ethylene doses, which is an experimentally-observed property that emerges in some of the evolved parameter sets. Finally, we probed simplified networks maintaining key features of the CFF/NFB and PFB topologies. From this, we verified observations drawn from the larger networks about mechanisms underlying ethylene

  13. Spherulitic growth of wax in the presence of kinetic inhibitors

    NASA Astrophysics Data System (ADS)

    Hutter, Jeffrey L.; Smith, Chris; Khmaladze, Alexander

    2001-03-01

    The petroleum industry has developed polymeric additives to prevent the precipitation of wax from diesel fuels in cold climates. These additives affect the crystallization kinetics of wax growth without affecting the thermodynamics. Some additives apparently operate by adsorbing to crystalline surfaces and blocking step flow, though direct evidence is lacking. We have used optical microscopy to study this process in model n-alkane systems with inhibitors added as a 1 wt% impurity. We find that the presence of the polymer dramatically alters the growth morphology of the wax --- rather than the usual plate-like growth, we see forms with all of the attributes of spherulites typical of bulk polymer growth, including radially oriented lamellae and banding. Since models for spherulitic growth postulate lamellar alignment by entropic pressure due to dangling polymer chains, the surface-adsorbed polymers are likely responsible for the similar alignment in wax spherulites. The banding seen in this case, however, results from periodic growth, rather than from the lamellar twisting seen in traditional polymer spherulites. We have modeled this effect as a coupling between the polymer adsorption rate and the growth rate of wax crystals.

  14. Solution growth kinetics and mechanism: Prismatic face of ADP

    NASA Astrophysics Data System (ADS)

    Chernov, A. A.; Rashkovich, L. N.; Mkrtchan, A. A.

    1986-01-01

    Laser Michelson interferometry has been applied to in situ study the (001) ADP growth kinetics in aqueous solution in the kinetic regime. The technique allows one to simultaneously measure the slope p of a growth hillock and normal growth rate R provided by this hillock. From these data, the average step growth rate v=R/p has been determined as a function of relative supersaturation σ. The dependencev(σ) is found to be linear, demonstrating the unimportance of surface and bulk diffusion. The direct incorporation at steps is characterized by the step kinetic coefficient βl=(5.1-6.4)X10-3 cm/s. The specific step free energy αl=(1.2-1.9) X10-6 erg/cm was determined from the measured linear dependence of the hillock slope on supersaturation for the hillock around presumably single elementary dislocation. For complex dislocation sources with large total Burgers vectors, the tendency to saturationin the hillock slope-supersaturation curves has been found. The curve perfectly fits the BCF expression which takes into account the perimeter 2L of the region occupied by the points in which the dislocation of the complex step source cross the growing face. For two dislocation sources,L=0.92 μm andL=0.31 μm and total Burgers vectors ⋍12h and 6h (h=7.53Å) have been found. The supersaturation dependence of activities for various complex dislocation sources have been directly demonstrated.

  15. A dynamic void growth model governed by dislocation kinetics

    NASA Astrophysics Data System (ADS)

    Wilkerson, J. W.; Ramesh, K. T.

    2014-10-01

    Here we examine the role of dislocation kinetics and substructure evolution on the dynamic growth of voids under very high strain rates, and develop a methodology for accounting for these effects in a computationally efficient manner. In particular, we account for the combined effects of relativistic dislocation drag and an evolving mobile dislocation density on the dynamics of void growth. We compare these effects to the constraints imposed by micro-inertia and discuss the conditions under which each mechanism governs the rate of void growth. The consequences of these constraints may be seen in a number of experimental observations associated with dynamic tensile failure, including the extreme rate-sensitivity of spall strength observed in laser shock experiments, an apparent anomalous temperate dependence of spall strength, and some particular features of void size distributions on spall surfaces.

  16. Kinetics of growth and aniline degradation by Stenotrophomonas maltophilia

    SciTech Connect

    Zissi, U.S.; Lyberatos, G.C.

    1999-01-01

    A pure bacterial culture of Stenotrophomonas maltophilia, capable of using aniline as a sole carbon source, was isolated. Kinetic experiments were conducted to develop a mathematical model that describes accurately the growth and utilization rates of the microorganism on the aniline and an alternate carbon source (glucose) individually and on their mixture. The growth of microorganisms and substrate utilization could be well described by using Monod expressions for limiting substrates. The presence of glucose in the culture medium did not repress aniline catabolism but simultaneous utilization was observed. When both substrates were present, the utilization of one substrate had a considerable effect on the utilization of the other. These effects were shown to be predicted by a mathematical model based on a modified Monod expression. The proposed model was found capable of describing accurately cellular growth as well as aniline and glucose biodegradation.

  17. Energetics and kinetics unveiled on helium cluster growth in tungsten

    NASA Astrophysics Data System (ADS)

    Wang, Jinlong; Niu, Liang-Liang; Shu, Xiaolin; Zhang, Ying

    2015-09-01

    The energetics and kinetics regarding helium (He) cluster growth in bcc tungsten (W) are unveiled using combined techniques of molecular statics and molecular dynamics. The principal mechanisms accounting for the decrease of system potential energy are identified to be trap mutation, < 100>   →  1/2< 111> cluster transformation, loop punching, coalescence between 1/2[1 1-1] and 1/2[1-1-1] loops, and loop capturing. The kinetic barriers associated with these key atomistic events are estimated. This work provides new insights into the complex yet intriguing atomistic evolution sequence of the He cluster and interstitial loop in W-based nuclear fusion materials under irradiation.

  18. Correlation between PLD repair capacity and the survival curve of human fibroblasts in exponential growth phase: analysis in terms of several parameters

    SciTech Connect

    Fertil, B.; Deschavanne, P.J.; Debieu, D.; Malaise, E.P.

    1988-10-01

    Published data on the in vitro radiosensitivity of 46 nontransformed fibroblasts of different genetic origins studied in plateau phase with immediate or delayed plating were used to investigate to what extent potentially lethal damage repair capacity is related to intrinsic radiosensitivity (i.e., irradiated in exponential growth phase). While most of the survival curve analysis is conducted in terms of D0, Dq, and the mean inactivation dose D, some of the data are also discussed in terms of the linear-quadratic model parameter alpha. Using D it is shown that: (i) the radiosensitivity of human fibroblasts in exponential growth phase does not significantly differ from that of plateau-phase fibroblasts with immediate plating; (ii) the radiosensitivity of plateau-phase cells with delayed plating is correlated to the radiosensitivity of cells with immediate plating: the more radioresistant the cell strain in exponential growth phase, the higher its repair capacity; (iii) the repair capacity of the cell strains is related to their genetic origin. In conclusion, we suggest that the survival curve of growing cells depends on the repair capacity of the cells.

  19. Kinetic model of impurity poisoning during growth of calcite

    SciTech Connect

    DeYoreo, J; Wasylenki, L; Dove, P; Wilson, D; Han, N

    2004-05-18

    The central role of the organic component in biologically controlled mineralization is widely recognized. These proteins are characterized by a high proportion of acidic amino acid residues, especially aspartate, Asp. At the same time, biomineralization takes place in the presence of a number of naturally-occurring, inorganic impurities, particularly Mg and Sr. In an attempt to decipher the controls on calcite growth imposed by both classes of modifiers, we have used in situ AFM to investigate the dependence of growth morphology and step kinetics on calcite in the presence of Sr{sup 2+}, as well as a wide suite of Aspartic acid-bearing polypeptides. In each case, we observe a distinct and step-specific modification. Most importantly, we find that the step speed exhibits a characteristic dependence on impurity concentration not predicted by existing crystal growth models. While all of the impurities clearly induce appearance of a 'dead zone,' neither the width of that dead zone nor the dependence of step speed on activity or impurity content can be explained by invoking the Gibbs-Thomson effect, which is the basis for the Cabrera-Vermilyea model of impurity poisoning. Common kink-blocking models also fail to explain the observed dependencies. Here we propose a kinetic model of inhibition based on a 'cooperative' effect of impurity adsorption at adjacent kink sites. The model is in qualitative agreement with the experimental results in that it predicts a non-linear dependence of dead zone width on impurity concentration, as well as a sharp drop in step speed above a certain impurity content. However, a detailed model of impurity adsorption kinetics that give quantitative agreement with the data has yet to be developed.

  20. Glass susceptibility: Growth kinetics and saturation under shear

    NASA Astrophysics Data System (ADS)

    Nandi, Saroj Kumar; Ramaswamy, Sriram

    2016-07-01

    We study the growth kinetics of glassy correlations in a structural glass by monitoring the evolution, within mode-coupling theory, of a suitably defined three-point function χC(t ,tw) with time t and waiting time tw. From the complete wave-vector-dependent equations of motion for domain growth, we pass to a schematic limit to obtain a numerically tractable form. We find that the peak value χCP of χC(t ,tw) , which can be viewed as a correlation volume, grows as tw0.5, and the relaxation time as tw0.8, following a quench to a point deep in the glassy state. These results constitute a theoretical explanation of the simulation findings of Parisi [J. Phys. Chem. B 103, 4128 (1999), 10.1021/jp983967m] and Kob and Barrat [Phys. Rev. Lett. 78, 4581 (1997), 10.1103/PhysRevLett.78.4581], and they are also in qualitative agreement with Parsaeian and Castillo [Phys. Rev. E 78, 060105(R) (2008), 10.1103/PhysRevE.78.060105]. On the other hand, if the quench is to a point on the liquid side, the correlation volume grows to saturation. We present a similar calculation for the growth kinetics in a p -spin spin glass mean-field model where we find a slower growth, χCP˜tw0.13 . Further, we show that a shear rate γ ˙ cuts off the growth of glassy correlations when tw˜1 /γ ˙ for quench in the glassy regime and tw=min(tr,1 /γ ˙) in the liquid, where tr is the relaxation time of the unsheared liquid. The relaxation time of the steady-state fluid in this case is ∝γ˙-0.8 .

  1. Leuconostoc mesenteroides growth kinetics with application to bacterial profile modification

    SciTech Connect

    Lappan, R.E.; Fogler, H.S. . Dept. of Chemical Engineering)

    1994-04-15

    Bacterial profile modification (BPM) is being developed as an oil recovery technique that uses bacteria to selectively plug oil depleted zones within a reservoir to divert displacing fluids into oil-rich zones. Leuconostoc mesenteroides, which produces dextran when supplied with sucrose, is a bacterium that is technically feasible for use in profile modification. However, the technique requires controlled bacterial growth to produce selective plugging. A kinetic model for the production of cells and polysaccharides has been developed for L. mesenteroides bacteria. This model, based on data from batch growth experiments, predicts saccharide utilization, cell generation, and dextran production. The underlying mechanism is the extracellular breakdown of sucrose into glucose and fructose and the subsequent production of polysaccharide. The monosaccharides are then available for growth. Accompanying sucrose consumption is the utilization of yeast extract. The cell requires a complex media that is provided by yeast extract as a source of vitamins and amino acids. Varying the concentration ratio of yeast extract to sucrose in the growth media provides a means of controlling the amount of polymer produced per cell. Consequently, in situ bacteria growth can be controlled by the manipulation of nutrient media composition, thereby providing the ability to create an overall strategy for the use of L. mesenteroides bacteria for profile modification.

  2. Radiochemical study of the kinetics of crystal growth in gels

    NASA Astrophysics Data System (ADS)

    Cecal, Alexandru; Palamaru, Mircea; Juverdeanu, Anca; Giosan, Marcel

    1996-01-01

    A kinetic study was performed on nucleation and growth of crystals containing radioactive ions in gelatin and agar gels. The investigated crystals were: 60CoHPO 4, 60CoS, 60Co(OH) 2, 60Co(SCN) 2, 204Tl(OH) 3, and 204Tl[(C 2H 5) 2NCS 2] 3. The study shows that the crystal growth rate depends on the cation size and charge, the nature of anion as well as on the colloidal medium. The crystallisation process in the gel has two distinctive steps: diffusion of reactant ions in the gel followed by a chemical reaction which leads to nucleation of the crystal. Both steps are described quantitatively.

  3. Kinetically controlled growth of gallium on stepped Si (553) surface

    NASA Astrophysics Data System (ADS)

    Kumar, Mukesh; Pasha, Syed Khalid; Govind

    2013-10-01

    Kinetically controlled growth of gallium (Ga) metal has been reported on high index stepped Si (553) surface and its thermal stability with various novel superstructural phases has been analyzed. Auger electron spectroscopy studies revealed that the adsorption of Ga at room temperature (RT) follows Frank-van der Merwe (FM) growth mode while for higher substrate temperature, Ga adsorption remains within the submonolayer range. Thermal desorption and low energy electron diffraction studies investigated the formation of thermally stable Ga-islands and the various Ga induced superstructural phase on Si (553). During room temperature adsorption, (1 1 1)7 × 7 facet of Si (553) reconstructed into (1 1 1)6 × 6 facet while during desorption process, stable (1 1 1)6 × 6 and (1 1 1)√3 × √3-R30° surface reconstructions has been observed.

  4. Continuous growth kinetics of Candida utilis in pineapple cannery effluent

    SciTech Connect

    Prior, B.A.

    1984-01-01

    Candida utilis was grown on a pineapple cannery effluent as the sole carbon and energy source in a chemostat at dilution rates between 0.10 and 0.62 h/sup -1/ to determine the growth kinetics. The principal sugars in the effluent were sucrose, glucose, and fructose. The cell yield coefficient on carbohydrate varied with dilution rate and a maximum value of 0.63 was observed at a dilution rate of 0.33 h/sup -1/. The steady-state concentrations of carbohydrate, reducing sugar, and chemical oxygen demand (COD) appeared to follow Monod saturation kinetics with increasing dilution rate, although none of the measured parameters represented a pure substrate. The maximum specific growth rate and reducing sugar saturation constant were 0.64 h/sup -1/ and 0.060 g/L, respectively. A maximum cell mass productivity of 2.3 g/L h was observed at a dilution rate of 0.51 h/sup -1/. At this dilution rate, only 68% of the COD was removed. A 95% COD removal was attained at a dilution rate of 0.10 h/sup -1/. Optimal yeast productivity and COD reduction occurred at a dilution rate of 0.33 h/sup -1/.

  5. Thermodynamic-kinetic simulation of constrained dendrite growth in steels

    SciTech Connect

    Miettinen, J.

    2000-04-01

    A model of constrained dendritic growth for steels, based on thermodynamic and kinetic theory, is presented. The model links thermodynamic chemical potential-equality equations to an existing, approximate treatment of constrained dendritic growth in multicomponent steels, taking into account the deviation from the local thermodynamic equilibrium of the phase interface caused by interface friction, capillarity, and solute trapping. Due to the thermodynamic approach, with a thermodynamic model and recently assessed data, the present treatment yields a more accurate determination of phase stabilities than the earlier methods. Depending on the steel composition and the growth conditions (growth rate and temperature gradient), the model determines the dendrite tip undercooling, the primary solid phase (ferrite or austenite), the stability of that phase, certain dimensions of the microstructure, and the solute accumulation ahead of the dendrite tip. A special optional calculations is that of the equally probable formation of ferrite and austenite in stainless steels. Calculations for testing the model and for validation it with experimental data are presented.

  6. Kinetic model of nucleation and growth in silicate melts: Implications for igneous textures and their quantitative description

    NASA Astrophysics Data System (ADS)

    Špillar, Václav; Dolejš, David

    2014-04-01

    We present a new high-resolution numerical model for the simulation of crystallization and texture evolution using arbitrary rates of crystal nucleation and growth. The algorithm models single or multiphase solidification in a three-dimensional domain and 17 simulations using constant, linearly increasing, exponential, and Gaussian functions for the rates of nucleation and growth yield equigranular to seriate textures. Conventional crystal size distributions of all textures are nearly linear to concave-down (previously interpreted as formed by equilibration coarsening), and identical distribution patterns can result from multiple non-unique combinations of nucleation and growth rates. The clustering index is always a non-monotonous function, which initially increases then decreases with increasing crystal fraction. For texture from random homogeneous nucleation the index is substantially lower than previous predictions based on a random sphere distribution line, hence, natural samples interpreted as clustered now have greater degrees of randomness or ordering. The average number of contact neighbors and the average neighbor distance of a crystal depend linearly on crystal size, but one of the two remains insensitive to nucleation and growth kinetics and represents potential indicator of other crystallization processes than random nucleation and crystal growth. Simultaneous comparison of size, spatial and clustering patterns and of their departures from expected values are suggested to allow for separation of effects of crystallization kinetics, melt-mineral mechanical interactions, suspension mixing, or postcrystallization re-equilibration and coarsening on natural igneous rocks.

  7. The mathematical properties of the quasi-chemical model for microorganism growth-death kinetics in foods.

    PubMed

    Ross, E W; Taub, I A; Doona, C J; Feeherry, F E; Kustin, K

    2005-03-15

    Knowledge of the mathematical properties of the quasi-chemical model [Taub, Feeherry, Ross, Kustin, Doona, 2003. A quasi-chemical kinetics model for the growth and death of Staphylococcus aureus in intermediate moisture bread. J. Food Sci. 68 (8), 2530-2537], which is used to characterize and predict microbial growth-death kinetics in foods, is important for its applications in predictive microbiology. The model consists of a system of four ordinary differential equations (ODEs), which govern the temporal dependence of the bacterial life cycle (the lag, exponential growth, stationary, and death phases, respectively). The ODE system derives from a hypothetical four-step reaction scheme that postulates the activity of a critical intermediate as an antagonist to growth (perhaps through a quorum sensing biomechanism). The general behavior of the solutions to the ODEs is illustrated by several examples. In instances when explicit mathematical solutions to these ODEs are not obtainable, mathematical approximations are used to find solutions that are helpful in evaluating growth in the early stages and again near the end of the process. Useful solutions for the ODE system are also obtained in the case where the rate of antagonist formation is small. The examples and the approximate solutions provide guidance in the parameter estimation that must be done when fitting the model to data. The general behavior of the solutions is illustrated by examples, and the MATLAB programs with worked examples are included in the appendices for use by predictive microbiologists for data collected independently. PMID:15734564

  8. Glass susceptibility: Growth kinetics and saturation under shear.

    PubMed

    Nandi, Saroj Kumar; Ramaswamy, Sriram

    2016-07-01

    We study the growth kinetics of glassy correlations in a structural glass by monitoring the evolution, within mode-coupling theory, of a suitably defined three-point function χ_{C}(t,t_{w}) with time t and waiting time t_{w}. From the complete wave-vector-dependent equations of motion for domain growth, we pass to a schematic limit to obtain a numerically tractable form. We find that the peak value χ_{C}^{P} of χ_{C}(t,t_{w}), which can be viewed as a correlation volume, grows as t_{w}^{0.5}, and the relaxation time as t_{w}^{0.8}, following a quench to a point deep in the glassy state. These results constitute a theoretical explanation of the simulation findings of Parisi [J. Phys. Chem. B 103, 4128 (1999)JPCBFK1520-610610.1021/jp983967m] and Kob and Barrat [Phys. Rev. Lett. 78, 4581 (1997)PRLTAO0031-900710.1103/PhysRevLett.78.4581], and they are also in qualitative agreement with Parsaeian and Castillo [Phys. Rev. E 78, 060105(R) (2008)PLEEE81539-375510.1103/PhysRevE.78.060105]. On the other hand, if the quench is to a point on the liquid side, the correlation volume grows to saturation. We present a similar calculation for the growth kinetics in a p-spin spin glass mean-field model where we find a slower growth, χ_{C}^{P}∼t_{w}^{0.13}. Further, we show that a shear rate γ[over ̇] cuts off the growth of glassy correlations when t_{w}∼1/γ[over ̇] for quench in the glassy regime and t_{w}=min(t_{r},1/γ[over ̇]) in the liquid, where t_{r} is the relaxation time of the unsheared liquid. The relaxation time of the steady-state fluid in this case is ∝γ[over ̇]^{-0.8}. PMID:27575179

  9. Different isotope and chemical patterns of pyrite oxidation related to lag and exponential growth phases of Acidithiobacillus ferrooxidans reveal a microbial growth strategy

    NASA Astrophysics Data System (ADS)

    Brunner, Benjamin; Yu, Jae-Young; Mielke, Randall E.; MacAskill, John A.; Madzunkov, Stojan; McGenity, Terry J.; Coleman, Max

    2008-06-01

    The solution chemistry during the initial (slow increase of dissolved iron and sulfate) and main stage (rapid increase of dissolved iron and sulfate) of pyrite leaching by Acidithiobacillus ferrooxidans (Af) at a starting pH of 2.05 shows significant differences. During the initial stage, ferrous iron (Fe2+) is the dominant iron species in solution and the molar ratio of produced sulfate (SO42-) and total iron (Fetot) is 1.1, thus does not reflect the stoichiometry of pyrite (FeS2). During the main stage, ferric iron (Fe3+) is the dominant iron species in solution and the SO42-:Fetot ratio is with 1.9, close to the stoichiometry of FeS2. Another difference between initial and main stage is an initial trend to slightly higher pH values followed by a drop during the main stage to pH 1.84. These observations raise the question if there are different modes of bioleaching of pyrite, and if there are, what those modes imply in terms of leaching mechanisms. Different oxygen and sulfur isotope trends of sulfate during the initial and main stages of pyrite oxidation confirm that there are two pyrite bioleaching modes. The biochemical reactions during initial stage are best explained by the net reaction FeS2 + 3O2 ⇒ Fe2+ + SO42- + SO2(g). The degassing of sulfur dioxide (SO2) acts as sink for sulfur depleted in 34S compared to pyrite, and is the cause of the SO42-:Fetot ratio of 1.1 and the near constant pH. During the exponential phase, pyrite sulfur is almost quantitatively converted to sulfate, according to the net reaction FeS2 + 15/4O2 + 1/2H2O ⇒ Fe3+ + 2SO42- + H+. We hypothesize that the transition between the modes of bioleaching of pyrite is due to the impact of the accumulation of ferrous iron, which induces changes in the metabolic activity of Af and may act as an inhibitor for the oxidation of sulfur species. This transition defines a fundamental change in the growth strategy of Af. A mode, where bacteria gain energy by oxidation of elemental sulfur to

  10. Arabidopsis thaliana root growth kinetics and lunisolar tidal acceleration.

    PubMed

    Fisahn, Joachim; Yazdanbakhsh, Nima; Klingele, Emile; Barlow, Peter

    2012-07-01

    • All living organisms on Earth are continually exposed to diurnal variations in the gravitational tidal force due to the Sun and Moon. • Elongation of primary roots of Arabidopsis thaliana seedlings maintained at a constant temperature was monitored for periods of up to 14 d using high temporal- and spatial-resolution video imaging. The time-course of the half-hourly elongation rates exhibited an oscillation which was maintained when the roots were placed in the free-running condition of continuous illumination. • Correlation between the root growth kinetics collected from seedlings initially raised under several light protocols but whose roots were subsequently in the free-running condition and the lunisolar tidal profiles enabled us to identify that the latter is the probable exogenous determinant of the rhythmic variation in root elongation rate. Similar observations and correlations using roots of Arabidopsis starch mutants suggest a central function of starch metabolism in the response to the lunisolar tide. The periodicity of the lunisolar tidal signal and the concomitant adjustments in root growth rate indicate that an exogenous timer exists for the modulation of root growth and development. • We propose that, in addition to the sensitivity to Earthly 1G gravity, which is inherent to all animals and plants, there is another type of responsiveness which is attuned to the natural diurnal variations of the lunisolar tidal force. PMID:22583121

  11. Growth kinetics in a phase field model with continuous symmetry

    NASA Astrophysics Data System (ADS)

    Marini Bettolo Marconi, Umberto; Crisanti, Andrea

    1996-07-01

    We discuss the static and kinetic properties of a Ginzburg-Landau spherically symmetric O(N) model recently introduced [U. Marini Bettolo Marconi and A. Crisanti, Phys. Rev. Lett. 75, 2168 (1995)] in order to generalize the so-called phase field model of Langer [Rev. Mod. Phys. 52, 1 (1980); Science 243, 1150 (1989)]. The Hamiltonian contains two O(N) invariant fields φ and U bilinearly coupled. The order parameter field φ evolves according to a nonconserved dynamics, whereas the diffusive field U follows a conserved dynamics. In the limit N-->∞ we obtain an exact solution, which displays an interesting kinetic behavior characterized by three different growth regimes. In the early regime the system displays normal scaling and the average domain size grows as t1/2; in the intermediate regime one observes a finite wave-vector instability, which is related to the Mullins-Sekerka instability; finally, in the late stage the structure function has a multiscaling behavior, while the domain size grows as t1/4.

  12. Screening and kinetic studies of catharanthine and ajmalicine accumulation and their correlation with growth biomass in Catharanthus roseus hairy roots.

    PubMed

    Benyammi, Roukia; Paris, Cédric; Khelifi-Slaoui, Majda; Zaoui, Djamila; Belabbassi, Ouarda; Bakiri, Nouara; Meriem Aci, Myassa; Harfi, Boualem; Malik, Sonia; Makhzoum, Abdullah; Desobry, Stéphane; Khelifi, Lakhdar

    2016-10-01

    Context Catharanthus roseus (L.) G. Don (Apocynaceae) is still one of the most important sources of terpene indole alkaloids including anticancer and hypertensive drugs as vincristine and vinblastine. These final compounds have complex pathway and many enzymes are involved in their biosynthesis. Indeed, ajmalicine and catharanthine are important precursors their increase can lead to enhance levels of molecules of interest. Objective This study aims at selecting the highest yield of hairy root line(s) and at identifying best times for further treatments. We study kinetics growth and alkaloids (ajmalicine and catharanthine) accumulation of three selected hairy root lines during the culture cycle in order to determine the relationship between biomass production and alkaloids accumulation. Materials and methods Comparative analysis has been carried out on three selected lines of Catharanthus roseus hairy roots (LP10, LP21 and L54) for their kinetics of growth and the accumulation of ajamalicine and catharanthine, throughout a 35-day culture cycle. The methanolic extract for each line in different times during culture cycle is analyzed using liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS). Results Maximum accumulation of the alkaloids is recorded for LP10 line in which the peak of ajmalicine and catharanthine accumulation reached to 3.8 and 4.3 mg/g dry weight (DW), respectively. This increase coincides with an exponential growth phase. Discussion and conclusion Our results suggest that the evolution of accumulation of ajmalicine and catharanthine are positively correlated with the development of the biomass growth. Significantly, for LP10 line the most promising line to continue optimizing the production of TIAs. Additionally, the end of exponential phase remains the best period for elicitor stimuli. PMID:26983347

  13. Oxidation kinetics and chemostat growth kinetics of Thiobacillus ferrooxidans on tetrathionate and thiosulfate.

    PubMed

    Eccleston, M; Kelly, D P

    1978-06-01

    Growth of Thiobacillus ferrooxidans in batch culture on 10 mM potassium tetrathionate was optimal at pH 2.5 (specific growth rate, 0.092 h-1). Oxygen electrode studies on resting cell suspensions showed that the apparent Km for tetrathionate oxidation (0.13 to 8.33 mM) was pH dependent, suggesting higher substrate affinity at higher pH. Conversely, oxidation rates were greatest at low pH. High substrate concentrations (7.7 to 77 mM) did not affect maximum oxidation rates at pH 3.0, but produced substrate inhibition at other pH values. Tetrathionate-grown cell suspensions also oxidized thiosulfate at pH 2.0 to 4.0. Apparent Km values (1.2 to 25 mM) were of the same order as for tetrathionate, but kinetics were complex. Continuous culture on growth-limiting tetrathionate at pH 2.5, followed by continuous culture on growth-limiting thiosulfate at pH 2.5, indicated true growth yield values (grams [dry weight] per gram-molecule of substrate) of 12.2 and 7.5, and maintenance coefficient values (millimoles of substrate per gram [dry weight) of organisms per hour) of 1.01 and 0.97 for tetrathionate and thiosulfate, respectively. Yield was increased on both media at low dilution rates by increase in CO2 supply. The apparent maintenance coefficient was lowered without affecting YG, suggesting better energy coupling in CO2-rich environments. Prolonged continuous cultivation on tetrathionate or thiosulfate did not affect the ability of the organism to grow subsequently in ferrous iron medium. PMID:26665

  14. Energy and fluxes of thermal runaway electrons produced by exponential growth of streamers during the stepping of lightning leaders and in transient luminous events

    NASA Astrophysics Data System (ADS)

    Celestin, Sebastien; Pasko, Victor P.

    2011-03-01

    In the present paper, we demonstrate that the exponential expansion of streamers propagating in fields higher than the critical fields for stable propagation of streamers of a given polarity leads to the exponential growth of electric potential differences in streamer heads. These electric potential differences are directly related to the energy that thermal runaway electrons can gain once created. Using full energy range relativistic Monte Carlo simulations, we show that the exponential growth of potential differences in streamers gives rise to the production of runaway electrons with energies as high as ˜100 keV, with most of electrons residing in energy range around several tens of keVs. We apply these concepts in the case of lightning stepped leaders during the stage of negative corona flash. The computation of electric field produced by stepped leaders demonstrates for the first time that those energetic electrons are capable of further acceleration up to the MeV energies. Moreover, the flux of runaway electrons produced by streamers suggests that stepped leaders produce a considerable number of energetic electrons, which is in agreement with the number of energetic photons observed from satellites in terrestrial gamma ray flashes (TGFs). The results suggest that previously proposed process of relativistic runaway electron avalanche is difficult to sustain in the low-electric fields observed in thunderclouds and is generally not needed for explanation of TGFs. The present work also gives insights on relations between physical properties of energetic electrons produced in streamers and the internal electrical properties of streamer discharges, which can further help development and interpretation of X-ray diagnostics of these discharges.

  15. Pattern Formation and Growth Kinetics in Eutectic Systems

    SciTech Connect

    Teng, Jing

    2007-01-01

    Growth patterns during liquid/solid phase transformation are governed by simultaneous effects of heat and mass transfer mechanisms, creation of new interfaces, jump of the crystallization units from liquid to solid and their rearrangement in the solid matrix. To examine how the above processes influence the scale of microstructure, two eutectic systems are chosen for the study: a polymeric system polyethylene glycol-p-dibromobenzene (PEG-DBBZ) and a simple molecular system succinonitrile (SCN)-camphor. The scaling law for SCN-camphor system is found to follow the classical Jackson-Hunt model of circular rod eutectic, where the diffusion in the liquid and the interface energy are the main physics governing the two-phase pattern. In contrast, a significantly different scaling law is observed for the polymer system. The interface kinetics of PEG phase and its solute concentration dependence thus have been critically investigated for the first time by directional solidification technique. A model is then proposed that shows that the two-phase pattern in polymers is governed by the interface diffusion and the interface kinetics. In SCN-camphor system, a new branch of eutectic, elliptical shape rodl, is found in thin samples where only one layer of camphor rods is present. It is found that the orientation of the ellipse can change from the major axis in the direction of the thickness to the direction of the width as the velocity and/or the sample thickness is decreased. A theoretical model is developed that predicts the spacing and orientation of the elliptical rods in a thin sample. The single phase growth patterns of SCN-camphor system were also examined with emphasis on the three-dimensional single cell and cell/dendrite transition. For the 3D single cell in a capillary tube, the entire cell shape ahead of the eutectic front can be described by the Saffmann-Taylor finger only at extremely low growth rate. A 3D directional solidification model is developed to

  16. Direct Observation of Aggregative Nanoparticle Growth: Kinetic Modeling of the Size Distribution and Growth Rate

    SciTech Connect

    Woehl, Taylor J.; Park, Chiwoo; Evans, James E.; Arslan, Ilke; Ristenpart, William D.; Browning, Nigel D.

    2014-01-08

    Direct observations of solution-phase nanoparticle growth using in situ liquid transmission electron microscopy (TEM) have demonstrated the importance of “non-classical” growth mechanisms, such as aggregation and coalescence, on the growth and final morphology of nanocrystals at the atomic and single nanoparticle scales. To date, groups have quantitatively interpreted the mean growth rate of nanoparticles in terms of the Lifshitz-Slyozov-Wagner (LSW) model for Ostwald ripening, but less attention has been paid to modeling the corresponding particle size distribution. Here we use in situ fluid stage scanning TEM to demonstrate that silver nanoparticles grow by a length-scale dependent mechanism, where individual nanoparticles grow by monomer attachment but ensemble-scale growth is dominated by aggregation. Although our observed mean nanoparticle growth rate is consistent with the LSW model, we show that the corresponding particle size distribution is broader and more symmetric than predicted by LSW. Following direct observations of aggregation, we interpret the ensemble-scale growth using Smoluchowski kinetics and demonstrate that the Smoluchowski model quantitatively captures the mean growth rate and particle size distribution.

  17. Physiologic growth hormone replacement improves fasting lipid kinetics in patients with HIV lipodystrophy syndrome

    Technology Transfer Automated Retrieval System (TEKTRAN)

    HIV lipodystrophy syndrome (HLS) is characterized by accelerated lipolysis, inadequate fat oxidation, increased hepatic reesterification, and a high frequency of growth hormone deficiency (GHD). The effect of growth hormone (GH) replacement on these lipid kinetic abnormalities is unknown. We aimed ...

  18. Growth kinetics of forsterite reaction rims at high-pressure

    NASA Astrophysics Data System (ADS)

    Nishihara, Yu; Maruyama, Genta; Nishi, Masayuki

    2016-08-01

    Growth kinetics of forsterite (Fo) reaction rims between periclase (Per) and enstatite (En) were studied experimentally at pressure (P) and temperature (T) conditions of 3.0-11.1 GPa and 1473-1873 K, respectively. Pt markers originally placed at the Per-En interface were always observed at the Per-Fo interface, which indicates that Mg and O are the diffusing species in Fo rim growth (Mg-O coupled diffusion). The presence of some En inclusions in Fo grains and the growth rate of the Fo rim suggests that grain boundary diffusion is dominant rather than lattice diffusion. Considering the very fast grain boundary diffusion of O in olivine, the Mg-O coupled grain boundary diffusion in Fo is deduced to be rate-limited by the diffusivity of Mg. Based on an analysis of data collected under dry conditions, the product of the Mg grain boundary diffusion coefficient (Dgb) and the effective grain boundary width (δ) was determined to be δDgb = δDgb,0exp[-(E∗ + PV∗)/RT] with δDgb,0 = 10-9.68 ± 1.51 m3/s, E∗ = 379 ± 44 kJ/mol and V∗ = -1.9 ± 1.4 cm3/mol. Our results, combined with previously reported data on Mg lattice diffusion in Fo, suggest that for Mg, the significance of grain boundary diffusion increases with depth in the Earth's upper mantle, although lattice diffusion is still dominant for typical mantle grain sizes of 1-10 mm.

  19. End-growth/evaporation living polymerization kinetics revisited

    NASA Astrophysics Data System (ADS)

    Semenov, A. N.; Nyrkova, I. A.

    2011-03-01

    End-growth/evaporation kinetics in living polymer systems with "association-ready" free unimers (no initiator) is considered theoretically. The study is focused on the systems with long chains (typical aggregation number N ≫ 1) at long times. A closed system of continuous equations is derived and is applied to study the kinetics of the chain length distribution (CLD) following a jump of a parameter (T-jump) inducing a change of the equilibrium mean chain length from N0 to N. The continuous approach is asymptotically exact for t ≫ t1, where t1 is the dimer dissociation time. It yields a number of essentially new analytical results concerning the CLD kinetics in some representative regimes. In particular, we obtained the asymptotically exact CLD response (for N ≫ 1) to a weak T-jump (ɛ = N0/N - 1 ≪ 1). For arbitrary T-jumps we found that the longest relaxation time tmax = 1/γ is always quadratic in N (γ is the relaxation rate of the slowest normal mode). More precisely tmax ∝4N2 for N0 < 2N and tmax ∝NN0/(1 - N/N0) for N0 > 2N. The mean chain length Nn is shown to change significantly during the intermediate slow relaxation stage t1 ≪ t ≪ tmax . We predict that N_n(t)-N_n(0)∝ √{t} in the intermediate regime for weak (or moderate) T-jumps. For a deep T-quench inducing strong increase of the equilibrium Nn (N ≫ N0 ≫ 1), the mean chain length follows a similar law, N_n(t)∝ √{t}, while an opposite T-jump (inducing chain shortening, N0 ≫ N ≫ 1) leads to a power-law decrease of Nn: Nn(t)∝t-1/3. It is also shown that a living polymer system gets strongly polydisperse in the latter regime, the maximum polydispersity index r = Nw/Nn being r* ≈ 0.77N0/N ≫ 1. The concentration of free unimers relaxes mainly during the fast process with the characteristic time tf ˜ t1N0/N2. A nonexponential CLD dominated by short chains develops as a result of the fast stage in the case of N0 = 1 and N ≫ 1. The obtained analytical results are supported

  20. The effect of inorganic and organic mercury on growth kinetics of Nitzschia accicularis W. Sm. and Tetraselmis suecica Butch.

    PubMed

    Mora, B; Fábregas, J

    1980-08-01

    Studies have been made on the toxicities of three inorganic (HgCl2, HgSO4, and NH2HgCl) and two organic (CH3HgCl and phenyl mercuric acetate (PMA)) mercury derivatives on planktonic algae (Nitzschia acicularis W. Sm. and Tetraselmis suecica Butch.) Growth kinetics and flourescence changes were used as criteria for assessing algal-metal responses. Methylmercury chloride was found to be the more toxic form, inhibiting growth of both species at levels of 0.025 ppm Hg. PMA inhibited Nitzschia at the same concentration. Inorganic forms prevent growth of the diatom at 0.15-0.20 ppm Hg. Addition of inorganic mercury at concentrations of 0.05 ppm Hg resulted in reduction of the lag phase, increase in exponential growth rate, or both. Increasing mercury concentrations caused a gradual increase in the lag phase in T. suecica and in N. acicularis only with mercuric sulphate. Populations recovered from this initial effect and started to grow. The effect of inoculum size on mercurial toxicity was tested. The higher concentrations of mercury that still permit growth restricted the chlorophyll fluorescence to the central cellular area and the cells appear slimmed. This effect is highest in concentrations that inhibit growth. PMID:6450629

  1. Callus Growth Kinetics of Physic Nut (Jatropha curcas L.) and Content of Fatty Acids from Crude Oil Obtained In Vitro.

    PubMed

    da Luz Costa, Jefferson; da Silva, André Luís Lopes; Bier, Mário César Jucoski; Brondani, Gilvano Ebling; Gollo, André Luiz; Letti, Luiz Alberto Junior; Erasmo, Eduardo Andrea Lemus; Soccol, Carlos Ricardo

    2015-06-01

    The callus growth kinetics allows identifying the appropriate moment for callus pealing and monitoring the accumulation of primary and secondary metabolites. The physic nut (Jatropha curcas L.) is a plant species used for biofuel production due to its high oil content; however, this plant presents a great amount of bioactive compounds which can be useful for industry. The aim of this research was to establish a calli growth curve and to evaluate the fatty acid profile of crude oil extracted from callus. The callus growth kinetics presented a sigmoid standard curve with six distinct phases: lag, exponential, linear, deceleration, stationary, and decline. Total soluble sugars were higher at the inoculation day. Reducing sugars were higher at the inoculation day and at the 80th day. The highest percentage of ethereal extract (oil content) was obtained at the 120th day of culture, reaching 18 % of crude oil from the callus. The calli produced medium-chain and long-chain fatty acids (from 10 to 18 carbon atoms). The palmitic acid was the fatty acid with the highest proportion in oil (55.4 %). The lipid profile obtained in callus oil was different from the seed oil profile. PMID:25917545

  2. Influence of deformation on dolomite rim growth kinetics

    NASA Astrophysics Data System (ADS)

    Helpa, Vanessa; Rybacki, Erik; Grafulha Morales, Luiz Fernando; Dresen, Georg

    2015-04-01

    Using a gas-deformation apparatus stacks of oriented calcite (CaCO3) and magnesite (MgCO3) single crystals were deformed at T = 750° C and P = 400 MPa to examine the influence of stress and strain on magnesio-calcite and dolomite (CaMg[CO3]2) growth kinetics. Triaxial compression and torsion tests performed at constant stresses between 7 and 38 MPa and test durations between 4 and 171 hours resulted in bulk strains of 0.03-0.2 and maximum shear strains of 0.8-5.6, respectively. The reaction rims consist of fine-grained (2-7 μm) dolomite with palisade-shaped grains growing into magnesite reactants and equiaxed granular dolomite grains next to calcite. In between dolomite and pure calcite, magnesio-calcite grains evolved with an average grain size of 20-40 μm. Grain boundaries tend to be straighter at high bulk strains and equilibrium angles at grain triple junctions are common within the magnesio-calcite layer. Transmission electron microscopy shows almost dislocation free palisades and increasing dislocation density within granular dolomite towards the magnesio-calcite boundary. Within magnesio-calcite grains, dislocations are concentrated at grain boundaries. Variation of time at fixed stress (˜17 MPa) yields a parabolic time dependence of dolomite rim width, indicating diffusion-controlled growth, similar to isostatic rim growth behavior. In contrast, the magnesio-calcite layer growth is enhanced compared to isostatic conditions. Triaxial compression at given time shows no significant change of dolomite rim thickness (11±2 μm) and width of magnesio-calcite layers (33±5 μm) with increasing stress. In torsion experiments, reaction layer thickness and grain size decrease from the center (low stress/strain) to the edge (high strain/stress) of samples. Chemical analysis shows nearly stoichiometric composition of dolomite palisades, but enhanced Ca content within granular grains, indicating local disequilibrium with magnesio-calcite, in particular for twisted

  3. Kinetics of Ni2Si growth from pure Ni and Ni(V) films on (111) and (100) Si

    NASA Astrophysics Data System (ADS)

    Harith, M. A.; Zhang, J. P.; Campisano, S. U.; Klaar, H.-J.

    1987-01-01

    The kinetics of Ni2Si growth from pure Ni and from Ni0.93V0.07 films on (111) and (100) silicon has been studied by the combination of He+ backscattering, x-ray diffraction, Auger electron spectroscopy (AES) and transmission electron microscopy (TEM) techniques. The activation energies are 1.5 and 1.0 eV for pure Ni and Ni(V) films, respectively while the pre-exponential factors in Ni(V) are 4 5 orders of magnitude smaller than in the pure Ni case. The variations in the measured rates are related to the different grain size of the growing suicide layers. The vanadium is rejected from the silicide layer and piles up at the metalsilicide interface.

  4. Menaquinone Synthesis is Critical for Maintaining Mycobacterial Viability During Exponential Growth and Recovery from Non-Replicating Persistence

    PubMed Central

    Dhiman, Rakesh K.; Mahapatra, Sebabrata; Slayden, Richard A.; Boyne, Melissa E.; Lenaerts, Anne; Hinshaw, Jerald C.; Angala, Shiva K.; Chatterjee, Delphi; Biswas, Kallolmay; Narayanasamy, Prabagaran; Kurosu, Michio; Crick, Dean C.

    2016-01-01

    Summary Understanding the basis of bacterial persistence in latent infections is critical for eradication of tuberculosis. Analysis of Mycobacterium tuberculosis mRNA expression in an in vitro model of non-replicating persistence indicated that the bacilli require electron transport chain components and ATP synthesis for survival. Additionally, low μM concentrations of aminoalkoxydiphenylmethane derivatives inhibited both the aerobic growth and survival of non-replicating, persistent M. tuberculosis. Metabolic labeling studies and quantitation of cellular menaquinone levels suggested that menaquinone synthesis, and consequently electron transport, is the target of the aminoalkoxydiphenylmethane derivatives. This hypothesis is strongly supported by the observations that treatment with these compounds inhibits oxygen consumption and that supplementation of growth medium with exogenous menaquinone rescued both growth and oxygen consumption of treated bacilli. In vitro assays indicate that the aminoalkoxydiphenylmethane derivatives specifically inhibit MenA, an enzyme involved in the synthesis of menaquinone. Thus, the results provide insight into the physiology of mycobacterial persistence and a basis for the development of novel drugs that enhance eradication of persistent bacilli and latent tuberculosis. PMID:19220750

  5. Kinetics and mechanisms of creep crack growth in a creep-resisting steel

    SciTech Connect

    Vainshtok, V.A.; Baumshtein, M.V.; Makovetskaya, I.A.; Man'ko, V.D.

    1986-02-01

    This paper discusses the nature of kinetic diagrams of growth of fatigue cracks in the temperature range typical of operation of important components of power equipment and examines the proportion of the incubation period of crack growth in the total life. The relationship of the kinetic diagrams of crack growth with the fracture mechanisms are examined and the effect of running life on creep crack propagation is reviewed.

  6. Exploring growth kinetics of carbon nanotube arrays by in situ optical diagnostics and modeling

    SciTech Connect

    Puretzky, Alexander A; Geohegan, David B; Pannala, Sreekanth; Rouleau, Christopher

    2014-01-01

    Simple kinetic models of carbon nanotube growth have been able to successfully link together many experimental parameters involved in the growth of carbon nanotubes for practical applications including the prediction of growth rates, terminal lengths, number of walls, activation energies, and their dependences on the growth environment. The implications of recent experiments utilizing in situ monitoring of carbon nanotube growth on our past kinetic model are first reviewed. Then, sub-second pulsed feedstock gas introduction is discussed to explore the nucleation and initial growth of carbon nanotubes in the context of the kinetic model. Moreover, kinetic effects in "pulsed CVD" - using repeated pulsed gas introduction to stop and restart nanotube growth - are explored to understand renucleation, the origin of alignment in nanotube arrays, and incremental growth. Time-resolved reflectivity of the surface is used to remotely understand the kinetics of nucleation and the coordinated growth of arrays. This approach demonstrates that continuous vertically aligned single wall carbon nanotubes can be grown incrementally by pulsed CVD, and that the first exposure of fresh catalyst to feedstock gas is critical to nanotubes site density required for coordinated growth. Aligned nanotube arrays (as short as 60 nm) are shown to nucleate and grow within single, sub-second gas pulses. The multiple-pulse growth experiments (> 100 pulses) show that a high fraction of nanotubes renucleate on subsequent gas pulses.

  7. Kinetics of gypsum formation and growth during the dissolution of colemanite in sulfuric acid

    NASA Astrophysics Data System (ADS)

    Çetin, E.; Eroğlu, İ.; Özkar, S.

    2001-11-01

    One of the most important boron minerals, colemanite, is dissolved in aqueous sulfuric acid to produce boric acid whereby gypsum is formed as byproduct. Filtration of gypsum has an important role in boric acid production because gypsum affects the efficiency, purity and crystallization of boric acid. The formation and growth kinetics of gypsum during the dissolution of colemanite in aqueous sulfuric acid were studied in a batch reactor by varying the temperature (60-90°C), stirring rate (150-400 rpm), and initial concentrations of the reactants. The initial CaO/H 2SO 4 molar ratio was varied between 0.21-0.85 by keeping the initial concentration of sulfate ion at [SO 42-] o=0.623 mol/l, and 0.85-3.41 by keeping the initial concentration of colemanite at [B 2O 3] o=0.777 mol/l. The crystallization of gypsum from the solution was followed by monitoring the calcium ion concentration in the solution as it is decreased by the formation of calcium sulfate precipitate. The calcium ion concentration in the liquid phase first undergoes a rapid exponential decay and then slowly approaches an asymptotic value of the saturation concentration at the respective temperature. The saturation concentration decreases with the increasing temperature from 5.2 mmol/l at 60°C to 3.1 mmol/l at 80°C, however, further increase in the temperature up to 90°C causes an increase in the saturation concentration to 5.1 mmol/l. The stirring rate was found to have no significant effect on dissolution in the range of 150-400 rpm. The minimum saturation concentration of the calcium ion was obtained at 80°C when the initial CaO/H 2SO 4 molar ratio is 0.85. The boric acid concentration in the solution decreases with the decreasing initial concentration of sulfuric acid. After the fast dissolution reaction of colemanite in aqueous sulfuric acid, the nucleation of the gypsum crystals first occurs from the supersaturated solution and then the crystals grow on these nuclei. The needle like crystals

  8. Free convection and surface kinetics in crystal growth from solution

    NASA Astrophysics Data System (ADS)

    Baird, James K.; Guo, Lihong

    1998-08-01

    As a crystal grows from solution, there is ordinarily a boundary layer depleted in solute, which forms at the crystal-solution interface. When the normal to the growing crystal surface is oriented in any direction other than parallel to gravity, the boundary layer is set into motion by the force of buoyancy. Using a similarity transformation and a boundary layer approximation, we have solved the Navier-Stokes equation and the equation for convective diffusion for a crystal in the form of a flat plate growing with normal perpendicular to gravity. Parameters in the theory include solute concentration, c0, and diffusion coefficient, D; solution shear viscosity, μ, mass density, ρ, and logarithmic density derivative with respect to concentration, α; crystal solubility, cs, height, h, and linear growth rate, kG; the specific rate, k (sticking coefficient), of the reaction which transfers molecules from the solution to the crystal and the kinetic order, n, of this reaction; and the acceleration due to gravity, g. We find these parameters to be related by the equation log[1-Sh/a (Sc) 1/4(Gr) 1/4φ s1/4]=(1/n) log[a(5/4) n(D/hkc 0n-1)(Sc)1/4(Gr) 1/4]+[(5/4-n)/n]log φs, where a=0.9, Sh=kGh/D, Sc=μ/ρD, Gr=gαh3ρ2/4μ2, and φs=(c0-cs)/c0. Given a knowledge of the solution physical properties, if Sh is measured as a function of φs and the results plotted in accord with the above equation, both n and k can be determined.

  9. A kinetic theory for nonanalog Monte Carlo particle transport algorithms: Exponential transform with angular biasing in planar-geometry anisotropically scattering media

    SciTech Connect

    Ueki, T.; Larsen, E.W.

    1998-09-01

    The authors show that Monte Carlo simulations of neutral particle transport in planargeometry anisotropically scattering media, using the exponential transform with angular biasing as a variance reduction device, are governed by a new Boltzman Monte Carlo (BMC) equation, which includes particle weight as an extra independent variable. The weight moments of the solution of the BMC equation determine the moments of the score and the mean number of collisions per history in the nonanalog Monte Carlo simulations. Therefore, the solution of the BMC equation predicts the variance of the score and the figure of merit in the simulation. Also, by (1) using an angular biasing function that is closely related to the ``asymptotic`` solution of the linear Boltzman equation and (2) requiring isotropic weight changes as collisions, they derive a new angular biasing scheme. Using the BMC equation, they propose a universal ``safe`` upper limit of the transform parameter, valid for any type of exponential transform. In numerical calculations, they demonstrate that the behavior of the Monte Carlo simulations and the performance predicted by deterministically solving the BMC equation agree well, and that the new angular biasing scheme is always advantageous.

  10. Kinetics of Austenite Grain Growth During Heating and Its Influence on Hot Deformation of LZ50 Steel

    NASA Astrophysics Data System (ADS)

    Du, Shiwen; Li, Yongtang; Zheng, Yi

    2016-07-01

    Grain growth behaviors of LZ50 have been systematically investigated for various temperatures and holding times. Quantitative evaluations of the grain growth kinetics over a wide range of temperature (950-1200 °C) and holding time (10-180 min) have been performed. With the holding time kept constant, the average austenite grain size has an exponential relationship with the heating temperature, while with the heating temperature kept constant, the relationship between the austenite average grain size and holding time is a parabolic curve approximately. The holding time dependence of average austenite grain size obeys the Beck's equation. As the heating temperature increases, the time exponent for grain growth n increases from 0.21 to 0.39. On the basis of previous models and experimental results, taking the initial grain size into account, the mathematical model for austenite grain growth of LZ50 during isothermal heating and non-isothermal heating is proposed. The effects of initial austenite grain size on hot deformation behavior of LZ50 are analyzed through true stress-strain curves under different deformation conditions. Initial grain size has a slight effect on peak stress.

  11. Phase-field Model for Interstitial Loop Growth Kinetics and Thermodynamic and Kinetic Models of Irradiated Fe-Cr Alloys

    SciTech Connect

    Li, Yulan; Hu, Shenyang Y.; Sun, Xin; Khaleel, Mohammad A.

    2011-06-15

    Microstructure evolution kinetics in irradiated materials has strongly spatial correlation. For example, void and second phases prefer to nucleate and grow at pre-existing defects such as dislocations, grain boundaries, and cracks. Inhomogeneous microstructure evolution results in inhomogeneity of microstructure and thermo-mechanical properties. Therefore, the simulation capability for predicting three dimensional (3-D) microstructure evolution kinetics and its subsequent impact on material properties and performance is crucial for scientific design of advanced nuclear materials and optimal operation conditions in order to reduce uncertainty in operational and safety margins. Very recently the meso-scale phase-field (PF) method has been used to predict gas bubble evolution, void swelling, void lattice formation and void migration in irradiated materials,. Although most results of phase-field simulations are qualitative due to the lake of accurate thermodynamic and kinetic properties of defects, possible missing of important kinetic properties and processes, and the capability of current codes and computers for large time and length scale modeling, the simulations demonstrate that PF method is a promising simulation tool for predicting 3-D heterogeneous microstructure and property evolution, and providing microstructure evolution kinetics for higher scale level simulations of microstructure and property evolution such as mean field methods. This report consists of two parts. In part I, we will present a new phase-field model for predicting interstitial loop growth kinetics in irradiated materials. The effect of defect (vacancy/interstitial) generation, diffusion and recombination, sink strength, long-range elastic interaction, inhomogeneous and anisotropic mobility on microstructure evolution kinetics is taken into account in the model. The model is used to study the effect of elastic interaction on interstitial loop growth kinetics, the interstitial flux, and sink

  12. Interactive effects of temperature, pH, and water activity on the growth kinetics of Shiga toxin-producing Escherichia coli O104:H4 3.

    PubMed

    Juneja, Vijay K; Mukhopadhyay, Sudarsan; Ukuku, Dike; Hwang, Cheng-An; Wu, Vivian C H; Thippareddi, Harshavardhan

    2014-05-01

    The risk of non-O157 Shiga toxin-producing Escherichia coli strains has become a growing public health concern. Several studies characterized the behavior of E. coli O157:H7; however, no reports on the influence of multiple factors on E. coli O104:H4 are available. This study examined the effects and interactions of temperature (7 to 46°C), pH (4.5 to 8.5), and water activity (aw ; 0.95 to 0.99) on the growth kinetics of E. coli O104:H4 and developed predictive models to estimate its growth potential in foods. Growth kinetics studies for each of the 23 variable combinations from a central composite design were performed. Growth data were used to obtain the lag phase duration (LPD), exponential growth rate, generation time, and maximum population density (MPD). These growth parameters as a function of temperature, pH, and aw as controlling factors were analyzed to generate second-order response surface models. The results indicate that the observed MPD was dependent on the pH, aw, and temperature of the growth medium. Increasing temperature resulted in a concomitant decrease in LPD. Regression analysis suggests that temperature, pH, and aw significantly affect the LPD, exponential growth rate, generation time, and MPD of E. coli O104:H4. A comparison between the observed values and those of E. coli O157:H7 predictions obtained by using the U. S. Department of Agriculture Pathogen Modeling Program indicated that E. coli O104:H4 grows faster than E. coli O157:H7. The developed models were validated with alfalfa and broccoli sprouts. These models will provide risk assessors and food safety managers a rapid means of estimating the likelihood that the pathogen, if present, would grow in response to the interaction of the three variables assessed. PMID:25198132

  13. Non-exponential relaxation, fictive temperatures, and dispersive kinetics in the liquid-glass-liquid transition range of acetaminophen, sulfathiazole, and their mixtures.

    PubMed

    Aji, D P B; Khouri, J; Johari, G P

    2014-11-01

    To investigate the effects of added molecular heterogeneity on the hysteretic features of liquid-glass-liquid transition, we studied acetaminophen, sulfathiazole, and three of their mixtures by calorimetry, and determined the T(g) and the fictive temperature, T(f), from changes in the enthalpy and entropy on the cooling and heating paths, as well as the non-exponential parameter, β(cal). We find that, (i) T(f) for cooling is within 1-3 K of T(f) for heating and both are close to T(g), (ii) the closed loop entropy change in the liquid-glass-liquid range is negligibly small, (iii) T(g) and T(f) increase on increasing sulfathiazole in the mixture, (iv) β(cal) first slightly increases when the second component is added and then decreases, and (v) ageing causes deviations from a non-exponential, nonlinear behavior of the glass. In terms of fluctuations in a potential energy landscape, adding a solute heterogeneity would shift the state point to another part of the landscape with a different distribution of barrier heights and a different number of minima accessible to the state point. Part of the change in β(cal) is attributed to hydrogen-bond formation between the two components. Ageing changes the relaxation times distribution, more at short relaxation times than at long relaxation times, and multiplicity of relaxation modes implied by β(cal) < 1 indicates that each mode contributing to the enthalpy has its own T(g) or T(f). β(cal) differs from β(age) determined from isothermal ageing, and the distribution parameter of α-relaxation times would differ from both β(cal) and β(age). PMID:25381531

  14. Temperature dependence of protein solubility-determination, application to crystallization, and growth kinetics studies

    NASA Technical Reports Server (NTRS)

    Rosenberger, Franz

    1993-01-01

    A scintillation method was developed for determinations of the temperature dependence of the solubility, and of nucleation induction times of proteins, in 50-100 mu(l) volumes of solution. Solubility data for lysozyme and horse serum albumin were obtained for various combinations of pH and precipitant concentrations. These data and the nucleation induction information were used for dynamic crystallization control, that is, for the controlled separation of nucleation and growth stages. Individual lysozyme and horse serum albumin crystals were grown in 15-20 mu(l) solution volumes contained in x-ray capillaries. The morphology and kinetics of the growth and dissolution of lysozyme in aqueous solutions with 2.5 percent NaCl and at pH = 4.5 was studied in situ with a depth resolution of 300 A (4 unit cells) by high resolution optical microscopy and digital image processing. The bulk super- or under saturation, sigma, of the solution inside a closed growth cell was controlled by temperature. The growth habit was bound by (110) and (101) faces that grew through layer spreading, although with different growth rate dependencies on supersaturation/temperature. At sigma less than 10 (obtained at higher temperatures) growth was purely kinetic ally controlled, with impurity effects (macrostep formation and kinetic hindrance) becoming significant for sigma less than 2. At sigma greater than 10 (lower temperatures), anisotropies in the interfacial kinetics were more pronounced, with interfacial kinetics and bulk transport becoming equally important to the growth morphology. Growth rates were growth history dependent. The formation of striations (layers of irregularly incorporated solution) was unambiguously correlated with growth temperature variations. Etching exposed dislocations and various high-index faces whose growth morphologies were studied during return to the steady state growth form. Growth steps were observed to originate from two-dimensional nuclei or from outcrops

  15. Correlated responses in body composition to divergent selection for exponential growth rate to 14 or 42 days of age in chickens.

    PubMed

    Sizemore, F G; Barbato, G F

    2002-07-01

    Chicks divergently selected for 14-d (14H and 14L) or 42-d (42H and 42L) exponential growth rate (EGR) over five generations were used to determine correlated responses between growth at different ages and body composition. Regression coefficient estimates across five generations of selection were not significant for any line at either age for percentage total body water or protein. Genetic correlations between EGR from hatching to 14 d of age (EGR14) and 42-d percentage carcass fat were -0.18, -0.57, 0.63, and -0.79 among the 14H, 14L, 42H, and 42L lines, respectively. Genetic correlations between EGR from hatching to 42 d of age (EGR42) and 42-d percentage carcass fat were 0.09, -0.67,0.50, and -0.75 among the 14H, 14L, 42H, and 42L lines, respectively. During the short-term selection experiment, selection for fast EGR14 or EGR42 increased fat at the age of selection. However, selection for fast EGR42 increased body weight and percentage fat at 42 d of age (DOA), whereas selection for fast EGR14 increased body weight but not fat at 42 DOA. Therefore, it is possible to simultaneously select for high body weight at, or near, the inflection point of the growth curve without increasing fat deposition or obesity by taking advantage of the lack of a genetic correlation between EGR14 and body fat percentage at later ages. PMID:12162352

  16. Computer Simulations of Interstitial Loop Growth Kinetics in irradiated bcc Fe

    SciTech Connect

    Li, Yulan; Hu, Shenyang Y.; Henager, Charles H.; Deng, Huiqiu; Gao, Fei; Sun, Xin; Khaleel, Mohammad A.

    2012-08-01

    The growth kinetics of (001) [001] interstitial loops in bcc Fe is studied by phase-field modeling. The effect of defect (vacancy/interstitial) concentration, generation, recombination, sink strength, and elastic interaction on the growth kinetics of interstitial loops is systematically simulated. Results show that the elastic interaction between the defects and interstitial loops speeds up the growth kinetics and affects the morphology of the interstitial loops. Linear growth rate, i.e., the loop average radius is linear to time, under both aging and irradiation are predicted, which is in agreement with experimental observation. The results also show that the interstitial loop growth rate, which is directly related to the sink strength of the interstitial loop for interstitials, increases linearly with the initial interstitial concentration during aging while changing logarithmically with the interstitial generation rate under irradiation.

  17. Exponential Growth through Pattern Exploration

    ERIC Educational Resources Information Center

    Brown, Betty

    2005-01-01

    Participants at the Summer Institute Pattern Exploration: Integration Math and Science in the Middle Grades used and developed a method treat arithmetic, algebra and geometry as one entity. The use of iterative geometric constructions is seen to reinforce the concepts of exponents, ratios and algebraic expressions for the nth stage of the…

  18. Recognizing Exponential Growth. Classroom Notes

    ERIC Educational Resources Information Center

    Dobbs, David E.

    2004-01-01

    Two heuristic and three rigorous arguments are given for the fact that functions of the form Ce[kx], with C an arbitrary constant, are the only solutions of the equation dy/dx=ky where k is constant. Various of the proofs in this self-contained note could find classroom use in a first-year calculus course, an introductory course on differential…

  19. Kinetics of nickel silicide growth in silicon nanowires: From linear to square root growth

    NASA Astrophysics Data System (ADS)

    Yaish, Y. E.; Katsman, A.; Cohen, G. M.; Beregovsky, M.

    2011-05-01

    The common practice for nickel silicide formation in silicon nanowires (SiNWs) relies on axial growth of silicide along the wire that is initiated from nickel reservoirs at the source and drain contacts. In the present work the silicide intrusions were studied for various parameters including wire diameter (25-50 nm), annealing time (15-120 s), annealing temperature (300-440∘C), and the quality of the initial Ni/Si interface. The silicide formation was investigated by high-resolution scanning electron microscopy, high-resolution transmission electron microscopy (TEM), and atomic force microscopy. The main part of the intrusion formed at 420∘C consists of monosilicide NiSi, as was confirmed by energy dispersive spectroscopy STEM, selected area diffraction TEM, and electrical resistance measurements of fully silicided SiNWs. The kinetics of nickel silicide axial growth in the SiNWs was analyzed in the framework of a diffusion model through constrictions. The model calculates the time dependence of the intrusion length, L, and predicts crossover from linear to square root time dependency for different wire parameters, as confirmed by the experimental data.

  20. The Escherichia coli FIS protein is not required for the activation of tyrT transcription on entry into exponential growth.

    PubMed Central

    Lazarus, L R; Travers, A A

    1993-01-01

    The Escherichia coli DNA bending protein factor for inversion stimulation (FIS), is neither necessary nor responsible for the stimulation of transcription from the wild type promoter for the tyrT operon (encoding a species of tyrosine tRNA) that occurs upon resumption of exponential growth. This conclusion is unexpected given that the regulatory element required for optimal transcription of tyrT contains three binding sites for FIS protein. In addition, it is in apparent conflict with reports from other laboratories which have described FIS-dependent activation of the stable RNA promoters rrnB P1 and thrU(tufB) in vivo. However, tyrT transcription is stimulated in a FIS-dependent manner both in vivo and in vitro when promoter function is impaired by mutation of the promoter itself or by the addition of the polymerase effector guanosine 5'-diphosphate 3'-diphosphate. These conditions, which expose a requirement for activation of stable RNA synthesis by FIS, suggest that FIS serves an adaptive role permitting high levels of stable RNA transcription on nutritional shift-up when RNA polymerase levels are depleted. In principle such a mechanism could confer a significant selective advantage thus accounting for the conservation of FIS binding sites in the regulatory regions of stable RNA promoters. Images PMID:7685276

  1. COMPARATIVE KINETIC STUDIES OF NITRATE-LIMITED GROWTH AND NITRATE UPTAKE IN PHYTOPLANKTON IN CONTINUOUS CULTURE

    EPA Science Inventory

    A comparative kinetic study of nitrate-limited growth and nitrate uptake was carried out in chemostat cultures of Ankistrodesmus falcatus, Asterionella formosa, Fragilaria crotonensis. In each species growth rate (microgram) was related to total cell nitrogen or cell quota (q) by...

  2. Modeling of kinetically limited growth rate for solution-synthesized germanium nanocrystals

    NASA Astrophysics Data System (ADS)

    Shoop, Nicholas; Tribby, Louis J.; Han, Sang M.

    2015-08-01

    Solution synthesis is a common method for preparing semiconductor nanocrystals (NCs). For such solution synthesis, many investigations have considered diffusion-limited growth, in which the diffusion of reactants through the boundary layer (BL) limits the NC growth rate. These studies often model the growth rate with a diffusion BL thickness much larger than the NC size and with unphysically low diffusion constants on the order of 10-12 cm2 s-1. In this work, we have examined the growth of Ge NCs synthesized by injecting Ge amide precursors into a solution of 1-octadecene, oleylamine, and hexadecylamine. We have previously established this low-temperature, low-pressure synthesis route. The resulting Ge growth rate compares well with our model, in which we consider both BL diffusion and surface kinetics of Ge precursors and organic ligand adsorbates. Our modeling results suggest that the NC growth is limited not by diffusion, but by the surface adsorption and desorption kinetics. The BL thickness in the stirred reaction vessel is calculated to be on the same order of magnitude as the crystal radius; therefore, the surface kinetics cannot be ignored. Furthermore, the synthesis temperature is near 300 °C, where the Ge monomer diffusion coefficient within the growth solution is substantially increased and estimated to be on the order of 10-5 cm2 s-1. These considerations agree well with our experimentally measured growth rate and strongly suggest that the NC size evolution is controlled primarily by the surface kinetics.

  3. Domain growth and ordering kinetics in dense quark matter

    SciTech Connect

    Singh, A.; Puri, S.; Mishra, H.

    2012-06-15

    The kinetics of chiral transitions in quark matter is studied in a two-flavor Nambu-Jona-Lasinio model. We focus on the phase-ordering dynamics subsequent to a temperature quench from the massless quark phase to the massive quark phase. We study the dynamics by considering a phenomenological model (Ginzburg-Landau free-energy functional). The morphology of the ordering system is characterized by the scaling of the order-parameter correlation function.

  4. Nanowire growth kinetics in aberration corrected environmental transmission electron microscopy.

    PubMed

    Chou, Yi-Chia; Panciera, Federico; Reuter, Mark C; Stach, Eric A; Ross, Frances M

    2016-04-14

    We visualize atomic level dynamics during Si nanowire growth using aberration corrected environmental transmission electron microscopy, and compare with lower pressure results from ultra-high vacuum microscopy. We discuss the importance of higher pressure observations for understanding growth mechanisms and describe protocols to minimize effects of the higher pressure background gas. PMID:27041654

  5. Giving Exponential Functions a Fair Shake

    ERIC Educational Resources Information Center

    Wanko, Jeffrey J.

    2005-01-01

    This article details an exploration of exponential decay and growth relationships using M&M's and dice. Students collect data for mathematical models and use graphing calculators to make sense of the general form of the exponential functions. (Contains 10 figures and 2 tables.)

  6. Kinetics of monolayer graphene growth by segregation on Pd(111)

    SciTech Connect

    Mok, H. S.; Murata, Y.; Kodambaka, S.; Ebnonnasir, A.; Ciobanu, C. V.; Nie, S.; McCarty, K. F.

    2014-03-10

    Using in situ low-energy electron microscopy and density functional theory calculations, we follow the growth of monolayer graphene on Pd(111) via surface segregation of bulk-dissolved carbon. Upon lowering the substrate temperature, nucleation of graphene begins on graphene-free Pd surface and continues to occur during graphene growth. Measurements of graphene growth rates and Pd surface work functions establish that this continued nucleation is due to increasing C adatom concentration on the Pd surface with time. We attribute this anomalous phenomenon to a large barrier for attachment of C adatoms to graphene coupled with a strong binding of the non-graphitic C to the Pd surface.

  7. Monoculture parameters successfully predict coculture growth kinetics of Bacteroides thetaiotaomicron and two Bifidobacterium strains.

    PubMed

    Van Wey, A S; Cookson, A L; Roy, N C; McNabb, W C; Soboleva, T K; Shorten, P R

    2014-11-17

    Microorganisms rarely live in isolation but are most often found in a consortium. This provides the potential for cross-feeding and nutrient competition among the microbial species, which make it challenging to predict the growth kinetics in coculture. In this paper we developed a mathematical model to describe substrate consumption and subsequent microbial growth and metabolite production for bacteria grown in monoculture. The model characterized substrate utilization kinetics of 18 Bifidobacterium strains. Some bifidobacterial strains demonstrated preferential degradation of oligofructose in that sugars with low degree of polymerization (DP) (DP≤3 or 4) were metabolized before sugars of higher DP, or vice versa. Thus, we expanded the model to describe the preferential degradation of oligofructose. In addition, we adapted the model to describe the competition between human colonic bacteria Bacteroides thetaiotaomicron LMG 11262 and Bifidobacterium longum LMG 11047 or Bifidobacterium breve Yakult for inulin as well as cross-feeding of breakdown products from the extracellular hydrolysis of inulin by B. thetaiotaomicron LMG 11262. We found that the coculture growth kinetics could be predicted based on the respective monoculture growth kinetics. Using growth kinetics from monoculture experiments to predict coculture dynamics will reduce the number of in vitro experiments required to parameterize multi-culture models. PMID:25282609

  8. Kinetic constants of abnormal grain growth in nanocrystalline nickel

    NASA Astrophysics Data System (ADS)

    Aleshin, A. N.

    2016-02-01

    The grain growth in nanocrystalline nickel with a purity of 99.5 at % during non-isothermal annealing was experimentally investigated using differential scanning calorimetry and transmission electron microscopy. Nanocrystalline nickel was prepared by electrodeposition and had an average grain size of approximately 20 nm. It was shown that, at a temperature corresponding to the calorimetric signal peak, abnormal grain growth occurs with the formation of a bimodal grain microstructure. Calorimeters signals were processed within the Johnson-Mehl-Avrami formalism. This made it possible to determine the exponent of the corresponding equation, the frequency factor, and the activation energy of the grain growth, which was found to be equal to the activation energy of the vacancy migration. The reasons for the abnormal grain growth in nanocrystalline nickel were discussed.

  9. Growth kinetics and H-shaped crystals of SAPO-40

    NASA Astrophysics Data System (ADS)

    Di Renzo, F.; Dumont, Nathalie; Trens, P.; Gabelica, Zelimir

    2003-11-01

    Crystal morphologies with well-defined macroscopic cavities are very rare occurrences. Tabular crystals of SAPO-40 with a symmetrical notch at each end have been obtained by selective inhibition of the growth of the large-pore faces. Crystal growth has continued on the small-pores (0 1 0) faces, circumvented the inhibited sphenoidal faces formed a protruding tab at the corners of the crystals.

  10. Growth Kinetics and Mechanics of Hydrate Films by Interfacial Rheology.

    PubMed

    Leopércio, Bruna C; de Souza Mendes, Paulo R; Fuller, Gerald G

    2016-05-01

    A new approach to study and understand the kinetics and mechanical properties of hydrates by interfacial rheology is presented. This is made possible using a "double wall ring" interfacial rheology cell that has been designed to provide the necessary temperature control. Cyclopentane and water are used to form hydrates, and this model system forms these structures at ambient pressures. Different temperature and water/hydrocarbon contact protocols are explored. Of particular interest is the importance of first contacting the hydrocarbon against ice crystals in order to initiate hydrate formation. Indeed, this is found to be the case, even though the hydrates may be created at temperatures above the melting point of ice. Once hydrates completely populate the hydrocarbon/water interface, strain sweeps of the interfacial elastic and viscous moduli are conducted to interrogate the mechanical response and fragility of the hydrate films. The dependence on temperature, Tf, by the kinetics of formation and the mechanical properties is reported, and the cyclopentane hydrate dissociation temperature was found to be between 6 and 7 °C. The formation time (measured from the moment when cyclopentane first contacts ice crystals) as well as the elastic modulus and the yield strain increase as Tf increases. PMID:27076092

  11. An exponential growth of computational phantom research in radiation protection, imaging, and radiotherapy: A review of the fifty-year history

    PubMed Central

    Xu, X. George

    2014-01-01

    Radiation dose calculation using models of the human anatomy has been a subject of great interest to radiation protection, medical imaging, and radiotherapy. However, early pioneers of this field did not foresee the exponential growth of research activity as observed today. This review article walks the reader through the history of the research and development in this field of study which started some 50 years ago. This review identifies a clear progression of computational phantom complexity which can be denoted by three distinct generations. The first generation of stylized phantoms, representing a grouping of less than dozen models, was initially developed in the 1960s at Oak Ridge National Laboratory to calculate internal doses from nuclear medicine procedures. Despite their anatomical simplicity, these computational phantoms were the best tools available at the time for internal/external dosimetry, image evaluation, and treatment dose evaluations. A second generation of a large number of voxelized phantoms arose rapidly in the late 1980s as a result of the increased availability of tomographic medical imaging and computers. Surprisingly, the last decade saw the emergence of the third generation of phantoms which are based on advanced geometries called boundary representation (BREP) in the form of Non-Uniform Rational B-Splines (NURBS) or polygonal meshes. This new class of phantoms now consists of over 287 models including those used for non-ionizing radiation applications. This review article aims to provide the reader with a general understanding of how the field of computational phantoms came about and the technical challenges it faced at different times. This goal is achieved by defining basic geometry modeling techniques and by analyzing selected phantoms in terms of geometrical features and dosimetric problems to be solved. The rich historical information is summarized in four tables that are aided by highlights in the text on how some of the most well

  12. An exponential growth of computational phantom research in radiation protection, imaging, and radiotherapy: a review of the fifty-year history.

    PubMed

    Xu, X George

    2014-09-21

    Radiation dose calculation using models of the human anatomy has been a subject of great interest to radiation protection, medical imaging, and radiotherapy. However, early pioneers of this field did not foresee the exponential growth of research activity as observed today. This review article walks the reader through the history of the research and development in this field of study which started some 50 years ago. This review identifies a clear progression of computational phantom complexity which can be denoted by three distinct generations. The first generation of stylized phantoms, representing a grouping of less than dozen models, was initially developed in the 1960s at Oak Ridge National Laboratory to calculate internal doses from nuclear medicine procedures. Despite their anatomical simplicity, these computational phantoms were the best tools available at the time for internal/external dosimetry, image evaluation, and treatment dose evaluations. A second generation of a large number of voxelized phantoms arose rapidly in the late 1980s as a result of the increased availability of tomographic medical imaging and computers. Surprisingly, the last decade saw the emergence of the third generation of phantoms which are based on advanced geometries called boundary representation (BREP) in the form of Non-Uniform Rational B-Splines (NURBS) or polygonal meshes. This new class of phantoms now consists of over 287 models including those used for non-ionizing radiation applications. This review article aims to provide the reader with a general understanding of how the field of computational phantoms came about and the technical challenges it faced at different times. This goal is achieved by defining basic geometry modeling techniques and by analyzing selected phantoms in terms of geometrical features and dosimetric problems to be solved. The rich historical information is summarized in four tables that are aided by highlights in the text on how some of the most

  13. In Bacillus subtilis LutR is part of the global complex regulatory network governing the adaptation to the transition from exponential growth to stationary phase.

    PubMed

    Irigül-Sönmez, Öykü; Köroğlu, Türkan E; Öztürk, Büşra; Kovács, Ákos T; Kuipers, Oscar P; Yazgan-Karataş, Ayten

    2014-02-01

    The lutR gene, encoding a product resembling a GntR-family transcriptional regulator, has previously been identified as a gene required for the production of the dipeptide antibiotic bacilysin in Bacillus subtilis. To understand the broader regulatory roles of LutR in B. subtilis, we studied the genome-wide effects of a lutR null mutation by combining transcriptional profiling studies using DNA microarrays, reverse transcription quantitative PCR, lacZ fusion analyses and gel mobility shift assays. We report that 65 transcriptional units corresponding to 23 mono-cistronic units and 42 operons show altered expression levels in lutR mutant cells, as compared with lutR(+) wild-type cells in early stationary phase. Among these, 11 single genes and 25 operons are likely to be under direct control of LutR. The products of these genes are involved in a variety of physiological processes associated with the onset of stationary phase in B. subtilis, including degradative enzyme production, antibiotic production and resistance, carbohydrate utilization and transport, nitrogen metabolism, phosphate uptake, fatty acid and phospholipid biosynthesis, protein synthesis and translocation, cell-wall metabolism, energy production, transfer of mobile genetic elements, induction of phage-related genes, sporulation, delay of sporulation and cannibalism, and biofilm formation. Furthermore, an electrophoretic mobility shift assay performed in the presence of both SinR and LutR revealed a close overlap between the LutR and SinR targets. Our data also revealed a significant overlap with the AbrB regulon. Together, these findings reveal that LutR is part of the global complex, interconnected regulatory systems governing adaptation of bacteria to the transition from exponential growth to stationary phase. PMID:24196425

  14. Kinetic-structural analysis of neuronal growth cone veil motility.

    PubMed

    Mongiu, Anne K; Weitzke, Elizabeth L; Chaga, Oleg Y; Borisy, Gary G

    2007-03-15

    Neuronal growth cone advance was investigated by correlative light and electron microscopy carried out on chick dorsal root ganglion cells. Advance was analyzed in terms of the two principal organelles responsible for protrusive motility in the growth cone - namely, veils and filopodia. Veils alternated between rapid phases of protrusion and retraction. Electron microscopy revealed characteristic structural differences between the phases. Our results provide a significant advance in three respects: first, protruding veils are comprised of a densely branched network of actin filaments that is lamellipodial in appearance and includes the Arp2/3 complex. On the basis of this structural and biomarker evidence, we infer that the dendritic nucleation and/or array-treadmilling mechanism of protrusive motility is conserved in veil protrusion of growth cones as in the motility of fibroblasts; second, retracting veils lack dendritic organization but contain a sparse network of long filaments; and third, growth cone filopodia have the capacity to nucleate dendritic networks along their length, a property consistent with veil formation seen at the light microscopic level but not previously understood in supramolecular terms. These elements of veil and filopodial organization, when taken together, provide a conceptual framework for understanding the structural basis of growth cone advance. PMID:17327278

  15. Kinetic Monte Carlo Simulation of Epitaxial Thin Film Growth: Formation of Submonolayer Islands and Multilayer Mounds

    SciTech Connect

    Evans, J. W.; Thiel, P. A.; Li, Maozhi

    2007-06-14

    We consider homoepitaxy (or low-misfit heteroepitaxy) via vapor deposition or MBE under UHV conditions. Thin film growth is initiated by nucleation and growth of 2D islands in the submonolayer regime. For atoms subsequently deposited on top of islands, a step edge barrier often inhibits downward transport and produces kinetic roughening during multilayer growth. Such unstable growth is characterized by the formation of 3D mounds (multilayer stacks of 2D islands). Kinetic Monte Carlo (KMC) simulation of suitable atomistic lattice-gas models can address fundamental or general issues related to both submonolayer and multilayer film evolution, and can also provide a predictive tool for morphological evolution in specific systems. Examples of the successes of KMC modeling are provided for metal homoepitaxial film growth, specifically for contrasting behavior in the classic Ag/Ag(100) and Ag/Ag(111) systems.

  16. Natural History, Growth Kinetics and Outcomes of Untreated Clinically Localized Renal Tumors Under Active Surveillance

    PubMed Central

    Crispen, Paul L.; Viterbo, Rosalia; Boorjian, Stephen A.; Greenberg, Richard E.; Chen, David Y.T.; Uzzo, Robert G.

    2010-01-01

    Background The growth kinetics of untreated solid organ malignancies are not defined. Radiographic active surveillance (AS) of renal tumors in patient unfit or unwilling to undergo intervention provides an opportunity to quantitate the natural history of untreated localized tumors. Here we report the radiographic growth kinetics of renal neoplasms during a period of surveillance. Methods We identified patients with enhancing renal masses who were radiographically observed for at least 12 months. Clinical and pathological records were reviewed to determine tumor growth kinetics and clinical outcomes. Tumor growth kinetics were expressed in terms of absolute and relative linear and volumetric growth. Results We identified 172 renal tumors in 154 patients under AS. Median tumor diameter and volume on presentation was 2.0 cm (mean 2.5, range 0.4 - 12.0) and 4.18 cm3 (mean 20.0, range 0.0033 – 904). Median duration of follow-up was 24 months (mean 31, range 12 – 156). A significant association between presenting tumor size and proportional growth was noted, with smaller tumors growing faster than larger tumors. 39% (68/173) of tumors underwent delayed intervention and 84% (57/68) were pathologically malignant. Progression to metastatic disease was noted in 1.3% (2/154) of patients. Conclusions We demonstrate the association between a tumor’s volume and subsequent growth with smaller tumors exhibiting significantly faster volumetric growth than larger tumors, consistent with Gompertzian kinetics. Surveillance of localized renal tumors is associated with a low rate of disease progression in the intermediate term and suggests potential over-treatment biases in select patients. PMID:19402168

  17. Role of plasma activation in the kinetics of CNT growth in PECVD process

    NASA Astrophysics Data System (ADS)

    Lebedeva, Irina; Gavrikov, Alexey; Baranov, Alexey; Belov, Maxim; Knizhnik, Andrey; Potapkin, Boris; Sommerer, Timothy

    2009-10-01

    The work presents kinetic modeling of the effect of acceleration for the growth kinetics of carbon nanotubes by hydrocarbon gas mixture modification with plasma discharge. The plasma activation creates active species in hydrocarbon gas mixture, which can easily adsorb and dissociate on the catalyst surface. So plasma treatment of the gas mixture in the CVD process allows to increase the carbon supply rate by a few orders of magnitude compared to that in thermal CVD process. On the other hand, plasma can also provide etching of carbon species from the catalyst surface. To correctly reproduce both of these effects of plasma, the kinetic model of growth of carbon nanotubes is developed based on first-principles analysis of heterogeneous processes on the catalyst surface and detailed kinetics of gas phase chemistry. The model is used to compare the growth rates of carbon nanotubes in thermal and plasma-enhanced CVD processes and to determine critical gas pressures, at which CNT growth kinetics switches from the adsorption limitation to the limitation by reaction and diffusion on the catalyst.

  18. Graphene CVD growth on copper and nickel: role of hydrogen in kinetics and structure.

    PubMed

    Losurdo, Maria; Giangregorio, Maria Michela; Capezzuto, Pio; Bruno, Giovanni

    2011-12-14

    Understanding the chemical vapor deposition (CVD) kinetics of graphene growth is important for advancing graphene processing and achieving better control of graphene thickness and properties. In the perspective of improving large area graphene quality, we have investigated in real-time the CVD kinetics using CH(4)-H(2) precursors on both polycrystalline copper and nickel. We highlighted the role of hydrogen in differentiating the growth kinetics and thickness of graphene on copper and nickel. Specifically, the growth kinetics and mechanism is framed in the competitive dissociative chemisorption of H(2) and dehydrogenating chemisorption of CH(4), and in the competition of the in-diffusion of carbon and hydrogen, being hydrogen in-diffusion faster in copper than nickel, while carbon diffusion is faster in nickel than copper. It is shown that hydrogen acts as an inhibitor for the CH(4) dehydrogenation on copper, contributing to suppress deposition onto the copper substrate, and degrades quality of graphene. Additionally, the evidence of the role of hydrogen in forming C-H out of plane defects in CVD graphene on Cu is also provided. Conversely, resurfacing recombination of hydrogen aids CH(4) decomposition in the case of Ni. Understanding better and providing other elements to the kinetics of graphene growth is helpful to define the optimal CH(4)/H(2) ratio, which ultimately can contribute to improve graphene layer thickness uniformity even on polycrystalline substrates. PMID:22006173

  19. Crystallization of pumpkin seed globulin: growth and dissolution kinetics

    NASA Astrophysics Data System (ADS)

    Malkin, Alexander J.; McPherson, Alexander

    1993-10-01

    Quasi-elastic light scattering was used to investigate the nucleation and crystallization of pumpkin ( Cucurbita) seed globulin. The diameter of the pumpkin globulin monomer was measured to be ≈ 5-6 nm. The supersaturation dependence of critical nucleus size was obtained, and this allowed an estimate of the interfacial free energy to be α ≈ 6.1 x 10 -2 erg/cm 2. The crystallization and dissolution kinetics were investigated for 4.9-16 mg/ml protein solutions containing 1-7% NaCl. The solubility data as a function of precipitant concentration and temperature were obtained and these will be utilized for optimization of the crystallization conditions for the pumpkin globulin.

  20. Self-consistent ion-by-ion growth model for kinetic isotopic fractionation during calcite precipitation

    NASA Astrophysics Data System (ADS)

    Nielsen, Laura C.; DePaolo, Donald J.; De Yoreo, James J.

    2012-06-01

    Microscopic mechanisms operating at the mineral-aqueous interface control rates of growth and dissolution, isotope fractionation and trace element partitioning during crystal growth. Despite the importance of characterizing surface kinetic controls on isotopic partitioning, no self-consistent microscopic theory has yet been presented which can simultaneously model both mineral growth rate and isotopic composition. Using a kinetic theory for AB or di-ionic crystal growth, we derive a model to predict precipitation rate and isotope fractionation as a function of growth solution oversaturation and solution stoichiometry and apply the theory to calcium isotope fractionation during calcite precipitation. Our model assimilates the current understanding of surface controlled isotope fractionation with kinetic theories of ion-by-ion mineral growth to predict isotopic partitioning during the growth of ionic crystals. This approach accounts for the effect of solution composition on microscopic mineral surface structure and composition, providing numerous testable hypotheses for growth of sparingly soluble AB crystals such as calcite, namely: Both oversaturation and solution stoichiometry control growth rate and partitioning of isotopes during precipitation; for growth driven primarily by step propagation, distinct expressions describe dislocation- and 2D nucleation-driven growth rates, while the expression for isotope fractionation is the same for both mechanisms; mineral precipitation occurring via the formation of an amorphous precursor will generate isotope effects that are not compatible with ion-by-ion growth theory and may therefore be excluded from comparison; and, the absolute kinetic limit of isotope fractionation may not be accessible at high oversaturation due to the formation of amorphous precursors. Using calcite as a model system, we derive expressions for growth rate and isotopic fractionation as a function of oversaturation and Ca:CO32- in solution

  1. An Exceptional Exponential Function

    ERIC Educational Resources Information Center

    Curgus, Branko

    2006-01-01

    We show that there is a link between a standard calculus problem of finding the best view of a painting and special tangent lines to the graphs of exponential functions. Surprisingly, the exponential function with the "best view" is not the one with the base "e." A similar link is established for families of functions obtained by composing…

  2. The kinetics of parasitic growth in GaAs MOVPE

    NASA Astrophysics Data System (ADS)

    Clayton, A. J.; Irvine, S. J. C.

    2007-03-01

    Gallium arsenide (GaAs) deposition was carried out in a horizontal quartz reactor tube with trimethylgallium (TMGa) and arsine (AsH 3) as precursors, using a hydrogen (H 2) carrier gas. Temperatures were in the range 400-500 °C, where surface reactions limit deposition rate. Nucleation time and deposition rate were monitored using laser interferometry, optimum reflectance was gained by aligning a quartz wafer to back reflect the incident beam. The 980 nm infrared laser beam was sufficiently long in wavelength to be able to penetrate the wall deposit. Results showing the effect of temperature and V/III ratio on the nucleation time and deposition rate are presented, where with temperature the nucleation delay was observed to reduce and the growth rate to increase. The nucleation delay is consistent with a thermally activated surface nucleation for the parasitic GaAs. A theoretical growth rate model, based on a restricted set of reaction steps was used to compare with the experimental growth rates. Without any free parameters, the growth rates from theoretical calculation and experiment agreed within a factor of two and showed the same trends with V/III ratio and temperature. The non-linearity of the theoretical growth rates on an Arrhenius plot indicates that there is more than one dominant reaction step over the temperature range investigated. The range of experimental activation energies, calculated from Arrhenius plots, was 17.56-23.59 kJ mol -1. A comparison of these activation energies and minimum deposition temperature with the literature indicates that the wall temperature measurement on an Aixtron reactor is over 100 °C higher than previously reported.

  3. Crystal Growth Kinetics and Viscous Behavior in Ge2Sb2Se5 Undercooled Melt.

    PubMed

    Barták, Jaroslav; Koštál, Petr; Podzemná, Veronika; Shánělová, Jana; Málek, Jiří

    2016-08-18

    Crystal growth, viscosity, and melting were studied in Ge2Sb2Se5 bulk samples. The crystals formed a compact layer on the surface of the sample and then continued to grow from the surface to the central part of the sample. The formed crystalline layer grew linearly with time, which suggests that the crystal growth is controlled by liquid-crystal interface kinetics. Combining the growth data with the measured viscosities and melting data, crystal growth could be described on the basis of standard crystal growth models. The screw dislocation growth model seems to be operative in describing the temperature dependence of the crystal growth rate in the studied material in a wide temperature range. A detailed discussion on the relation between the kinetic coefficient of crystal growth and viscosity (ukin ∝ η(-ξ)) is presented. The activation energy of crystal growth was found to be higher than the activation energy of crystallization obtained from differential scanning calorimetry, which covers the whole nucleation-growth process. This difference is considered and explained under the experimental conditions. PMID:27441575

  4. Modified Gompertz equation for electrotherapy murine tumor growth kinetics: predictions and new hypotheses

    PubMed Central

    2010-01-01

    Background Electrotherapy effectiveness at different doses has been demonstrated in preclinical and clinical studies; however, several aspects that occur in the tumor growth kinetics before and after treatment have not yet been revealed. Mathematical modeling is a useful instrument that can reveal some of these aspects. The aim of this paper is to describe the complete growth kinetics of unperturbed and perturbed tumors through use of the modified Gompertz equation in order to generate useful insight into the mechanisms that underpin this devastating disease. Methods The complete tumor growth kinetics for control and treated groups are obtained by interpolation and extrapolation methods with different time steps, using experimental data of fibrosarcoma Sa-37. In the modified Gompertz equation, a delay time is introduced to describe the tumor's natural history before treatment. Different graphical strategies are used in order to reveal new information in the complete kinetics of this tumor type. Results The first stage of complete tumor growth kinetics is highly non linear. The model, at this stage, shows different aspects that agree with those reported theoretically and experimentally. Tumor reversibility and the proportionality between regions before and after electrotherapy are demonstrated. In tumors that reach partial remission, two antagonistic post-treatment processes are induced, whereas in complete remission, two unknown antitumor mechanisms are induced. Conclusion The modified Gompertz equation is likely to lead to insights within cancer research. Such insights hold promise for increasing our understanding of tumors as self-organizing systems and, the possible existence of phase transitions in tumor growth kinetics, which, in turn, may have significant impacts both on cancer research and on clinical practice. PMID:21029411

  5. Model for computing kinetics of the graphene edge epitaxial growth on copper

    NASA Astrophysics Data System (ADS)

    Khenner, Mikhail

    2016-06-01

    A basic kinetic model that incorporates a coupled dynamics of the carbon atoms and dimers on a copper surface is used to compute growth of a single-layer graphene island. The speed of the island's edge advancement on Cu[111] and Cu[100] surfaces is computed as a function of the growth temperature and pressure. Spatially resolved concentration profiles of the atoms and dimers are determined, and the contributions provided by these species to the growth speed are discussed. Island growth under the conditions of a thermal cycling is studied.

  6. Integrated kinetic and probabilistic modeling of the growth potential of bacterial populations.

    PubMed

    George, S M; Métris, A; Baranyi, J

    2015-05-01

    When bacteria are exposed to osmotic stress, some cells recover and grow, while others die or are unculturable. This leads to a viable count growth curve where the cell number decreases before the onset of the exponential growth phase. From such curves, it is impossible to estimate what proportion of the initial cells generates the growth because it leads to an ill-conditioned numerical problem. Here, we applied a combination of experimental and statistical methods, based on optical density measurements, to infer both the probability of growth and the maximum specific growth rate of the culture. We quantified the growth potential of a bacterial population as a quantity composed from the probability of growth and the "suitability" of the growing subpopulation to the new environment. We found that, for all three laboratory media studied, the probability of growth decreased while the "work to be done" by the growing subpopulation (defined as the negative logarithm of their suitability parameter) increased with NaCl concentration. The results suggest that the effect of medium on the probability of growth could be described by a simple shift parameter, a differential NaCl concentration that can be accounted for by the change in the medium composition. Finally, we highlighted the need for further understanding of the effect of the osmoprotectant glycine betaine on metabolism. PMID:25747002

  7. How exponential are FREDs?

    NASA Astrophysics Data System (ADS)

    Schaefer, Bradley E.; Dyson, Samuel E.

    1996-08-01

    A common Gamma-Ray Burst-light curve shape is the ``FRED'' or ``fast-rise exponential-decay.'' But how exponential is the tail? Are they merely decaying with some smoothly decreasing decline rate, or is the functional form an exponential to within the uncertainties? If the shape really is an exponential, then it would be reasonable to assign some physically significant time scale to the burst. That is, there would have to be some specific mechanism that produces the characteristic decay profile. So if an exponential is found, then we will know that the decay light curve profile is governed by one mechanism (at least for simple FREDs) instead of by complex/multiple mechanisms. As such, a specific number amenable to theory can be derived for each FRED. We report on the fitting of exponentials (and two other shapes) to the tails of ten bright BATSE bursts. The BATSE trigger numbers are 105, 257, 451, 907, 1406, 1578, 1883, 1885, 1989, and 2193. Our technique was to perform a least square fit to the tail from some time after peak until the light curve approaches background. We find that most FREDs are not exponentials, although a few come close. But since the other candidate shapes come close just as often, we conclude that the FREDs are misnamed.

  8. The logistic growth of duckweed (Lemna minor) and kinetics of ammonium uptake.

    PubMed

    Zhang, Kun; Chen, You-Peng; Zhang, Ting-Ting; Zhao, Yun; Shen, Yu; Huang, Lei; Gao, Xu; Guo, Jin-Song

    2014-01-01

    Mathematical models have been developed to describe nitrogen uptake and duckweed growth experimentally to study the kinetics of ammonium uptake under various concentrations. The kinetics of duckweed ammonium uptake was investigated using the modified depletion method after plants were grown for two weeks at different ammonium concentrations (0.5-14 mg/L) in the culture medium. The maximum uptake rate and Michaelis-Menten constant for ammonium were estimated as 0.082 mg/(g fresh weight x h) and 1.877 mg/L, respectively. Duckweed growth was assessed when supplied at different total nitrogen (TN) concentrations (1-5 mg/L) in the culture medium. The results showed that the intrinsic growth rate was from 0.22 to 0.26 d(-1), and TN concentrations had no significant influence on the duckweed growth rate. PMID:24645435

  9. Nonlinear estimation of Monod growth kinetic parameters from a single substrate depletion curve.

    PubMed Central

    Robinson, J A; Tiedje, J M

    1983-01-01

    Monod growth kinetic parameters were estimated by fitting sigmoidal substrate depletion data to the integrated Monod equation, using nonlinear least-squares analysis. When the initial substrate concentration was in the mixed-order region, nonlinear estimation of simulated data sets containing known measurement errors provided accurate estimates of the mu max, Ks, and Y values used to create these data. Nonlinear regression analysis of sigmoidal substrate depletion data was also evaluated for H2-limited batch growth of Desulfovibrio sp. strain G11. The integrated Monod equation can be more convenient for the estimation of growth kinetic parameters, particularly for gaseous substrates, but it must be recognized that the estimates of mu max, Ks, and Y obtained may be influenced by the growth rate history of the inoculum. PMID:6870238

  10. Kinetic Roughening and Energetics of Tetragonal Lysozyme Crystal Growth: A Preliminary Atomic Force Microscopy Investigation

    NASA Technical Reports Server (NTRS)

    Gorti, Sridhar; Forsythe, Elizabeth L.; Pusey, Marc L.

    2004-01-01

    We examined particulars of crystal growth from measurements obtained at both microscopic and molecular levels. The crystal growth measurements performed at the microscopic level are well characterized by a model that balances the flux of macromolecules towards the crystal surface with the flux of the crystal surface. Numerical evaluation of model with measurements of crystal growth, in time, provided accurate estimates for the average growth velocities. Growth velocities thus obtained were also interpreted using well-established phenomenological theories. Moreover, we find that microscopic measurements of growth velocity measurements obtained as a function of temperature best characterizes changes in crystal growth modes, when present. We also examined the possibility of detecting a change in crystal growth modes at the molecular level using atomic force microscopy, AFM. From preliminary AFM measurements performed at various supersaturations, we find that magnitude of surface height fluctuations, h(x), increases with supersaturation. Further examination of surface height fluctuations using methods established for fluctuation spectroscopy also enabled the discovery of the existence of a characteristic length, c, which may possibly determine the mode of crystal growth. Although the results are preliminary, we establish the non- critical divergence of 5 and the root-mean-square (rms) magnitude of height-height fluctuations as the kinetic roughening transition temperatures are approached. Moreover, we also examine approximate models for interpreting the non-critical behavior of both 6 and rms magnitude of height-height fluctuations, as the solution supersaturation is increased towards the kinetic roughening supersaturation.

  11. COMPARATIVE KINETIC STUDIES OF PHOSPHATE-LIMITED GROWTH AND PHOSPHATE UPTAKE IN PHYTOPLANKTON IN CONTINUOUS CULTURE

    EPA Science Inventory

    A comparative kinetic study of phosphate-limited growth and phosphate uptake was carried out in chemostat cultures of Anabaena flos-aquae Lyng. Breb., Ankistrodesmus falcatus (Corda) Ralfs, Asterionella formosa Hass., Fragilaria crotonensis Kitt., and Microcystis sp. Lemm. For ea...

  12. Growth Kinetics of Intracellular RNA/Protein Droplets: Signature of a Liquid-Liquid Phase Transition?

    NASA Astrophysics Data System (ADS)

    Berry, Joel; Weber, Stephanie C.; Vaidya, Nilesh; Zhu, Lian; Haataja, Mikko; Brangwynne, Clifford P.

    2015-03-01

    Nonmembrane-bound organelles are functional, dynamic assemblies of RNA and/or protein that can self-assemble and disassemble within the cytoplasm or nucleoplasm. The possibility that underlying intracellular phase transitions may drive and mediate the morphological evolution of some membrane-less organelles has been supported by several recent studies. In this talk, results from a collaborative experimental-theoretical study of the growth and dissolution kinetics of nucleoli and extranucleolar droplets (ENDs) in C. elegans embryos will be presented. We have employed Flory-Huggins solution theory, reaction-diffusion kinetics, and quantitative statistical dynamic scaling analysis to characterize the specific growth mechanisms at work. Our findings indicate that both in vivo and in vitro droplet scaling and growth kinetics are consistent with those resulting from an equilibrium liquid-liquid phase transition mediated by passive nonequilibrium growth mechanisms - simultaneous Brownian coalescence and Ostwald ripening. This supports a view in which cells can employ phase transitions to drive structural organization, while utilizing active processes, such as local transcriptional activity, to fine tune the kinetics of these phase transitions in response to given conditions.

  13. Growth kinetics of Al–Fe intermetallic compounds during annealing treatment of friction stir lap welds

    SciTech Connect

    Movahedi, M.; Kokabi, A.H.; Seyed Reihani, S.M.; Najafi, H.; Farzadfar, S.A.; Cheng, W.J.; Wang, C.J.

    2014-04-01

    In this study, we explored the growth kinetics of the Al–Fe intermetallic (IM) layer at the joint interface of the St-12/Al-5083 friction stir lap welds during post-weld annealing treatment at 350, 400 and 450 °C for 30 to 180 min. Optical microscope (OM), field emission gun scanning electron microscope (FEG-SEM) and transmission electron microscope (TEM) were employed to investigate the structure of the weld zone. The thickness and composition of the IM layers were evaluated using image analysis system and electron back-scatter diffraction (EBSD), respectively. Moreover, kernel average misorientation (KAM) analysis was performed to evaluate the level of stored energy in the as-welded state. The results showed that the growth kinetics of the IM layer was not governed by a parabolic diffusion law. Presence of the IM compounds as well as high stored energy near the joint interface of the as-welded sample was recognized to be the origin of the observed deviation from the parabolic diffusion law. - Highlights: • This work provided a new insight into growth kinetics of Al–Fe IM thickness. • The growth kinetics of IM layer was not governed by a parabolic diffusion law. • IM near the joint interface was the origin of deviation from the parabolic law. • High stored energy at joint interface was origin of deviation from parabolic law.

  14. Mathematical modeling and growth kinetics of Clostridium sporogenes in cooked beef

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Clostridium sporogenes PA 3679 is a common surrogate for proteolytic Clostridium botulinum for thermal process development and validation. However, little information is available concerning the growth kinetics of C. sporogenes in food. Therefore, the objective of this study was to investigate the...

  15. An Unusual Exponential Graph

    ERIC Educational Resources Information Center

    Syed, M. Qasim; Lovatt, Ian

    2014-01-01

    This paper is an addition to the series of papers on the exponential function begun by Albert Bartlett. In particular, we ask how the graph of the exponential function y = e[superscript -t/t] would appear if y were plotted versus ln t rather than the normal practice of plotting ln y versus t. In answering this question, we find a new way to…

  16. Growth kinetics of three species of Tetrahymena on solid agar

    SciTech Connect

    Dobra, K.W.; McArdle, E.W.; Ehret, C.F.

    1980-01-01

    A nutrient-agar method without liquid overlay has been developed for cultivation of ciliates. Three species of Tetrahymena-T. pyriformis strain W, T. rostrata strain UNI, and T. vorax strain V/sub 2/S, representing the 3 main groups of Tetrahymena species, were used; however the method should apply to other ciliates. Growth on the surface of the agar was facilitated by an optimal surface-to-volume ratio yielding a high density of ciliates and short generation times. At the highest density achieved, the cells became irregularly hexagonal and formed a monolayer tissue on the agar. Ciliates grown on agar were like those in liquid culture, typical oral ciliature, food-vacuole formation, and typical cortical patterns being retained. Advantages of this method include high cell density, easy recovery, and optimal O/sub 2/ supply. The organisms can also be cultivated on the surface of sterile cellulose-nitrate filters, facilitating in situ fixation and staining as well as transfer into different media by transfer of filters with cells, without prior centrifugation and resuspension.

  17. Intermetallic compound layer growth kinetics in non-lead bearing solders

    SciTech Connect

    Vianco, P.T.; Kilgo, A.C.; Grant, R.

    1995-04-01

    The introduction of alternative, non-lead bearing solders into electronic assemblies requires a thorough investigation of product manufacturability and reliability. Both of these attributes can be impacted by the excessive growth of intermetallic compound (IMC) layers at the solder/substrate interface. An extensive study has documented the stoichiometry and solid state growth kinetics of IMC layers formed between copper and the lead-free solders: 96.5Sn-3.5Ag (wt.%), 95Sn-5Sb, 100Sn, and 58Bi-42Sn. Aging temperatures were 70--205 C for the Sn-based solders and 55--120 C for the Bi-rich solder. Time periods were 1--400 days for all of the alloys. The Sn/Cu, Sn-Ag/Cu, and Sn-Sb/Cu IMC layers exhibited sub-layers of Cu{sub 6}Sn{sub 5} and Cu{sub 3}Sn; the latter composition was present only following prolonged aging times or higher temperatures. The total layer growth exhibited a time exponent of n = 0.5 at low temperatures and a value of n = 0.42 at higher temperatures in each of the solder/Cu systems. Similar growth kinetics were observed with the low temperature 58Bi-42Sn solder; however, a considerably more complex sub-layer structure was observed. The kinetic data will be discussed with respect to predicting IMC layer growth based upon solder composition.

  18. The kinetic boundary layer around an absorbing sphere and the growth of small droplets

    SciTech Connect

    Widder, M.E.; Titulaer, U.M. )

    1989-06-01

    Deviations from the classical Smoluchowski expression for the growth rate of a droplet in a supersaturated vapor can be expected when the droplet radius is not large compared to the mean free path of a vapor molecule. The growth rate then depends significantly on the structure of the kinetic boundary layer around a sphere. The authors consider this kinetic boundary layer for a dilute system of Brownian particles. For this system a large class of boundary layer problems for a planar wall have been solved. They show how the spherical boundary layer can be treated by a perturbation expansion in the reciprocal droplet radius. In each order one has to solve a finite number of planar boundary layer problems. The first two corrections to the planar problem are calculated explicitly. For radii down to about two velocity persistence lengths (the analog of the mean free path for a Brownian particle) the successive approximations for the growth rate agree to within a few percent. A reasonable estimate of the growth rate for all radii can be obtained by extrapolating toward the exactly known value at zero radius. Kinetic boundary layer effects increase the time needed for growth from 0 to 10 (or 2{1/2}) velocity persistence lengths by roughly 35% (or 175%).

  19. Diameter-Independent Kinetics in the Vapor-Liquid-Solid Growth of Si Nanowires

    NASA Astrophysics Data System (ADS)

    Kodambaka, S.; Tersoff, J.; Reuter, M. C.; Ross, F. M.

    2006-03-01

    We examine individual Si nanowires grown by the vapor-liquid-solid mechanism, using real-time in situ ultra high vacuum transmission electron microscopy. By directly observing Au-catalyzed growth of Si wires from disilane, we show that the growth rate is independent of wire diameter, contrary to the expected behavior. Our measurements show that the unique rate-limiting step here is the irreversible, kinetically limited, dissociative adsorption of disilane directly on the catalyst surface. We also identify a novel dependence of growth rate on wire taper.

  20. Diameter-independent kinetics in the vapor-liquid-solid growth of Si nanowires.

    PubMed

    Kodambaka, S; Tersoff, J; Reuter, M C; Ross, F M

    2006-03-10

    We examine individual Si nanowires grown by the vapor-liquid-solid mechanism, using real-time in situ ultra high vacuum transmission electron microscopy. By directly observing Au-catalyzed growth of Si wires from disilane, we show that the growth rate is independent of wire diameter, contrary to the expected behavior. Our measurements show that the unique rate-limiting step here is the irreversible, kinetically limited, dissociative adsorption of disilane directly on the catalyst surface. We also identify a novel dependence of growth rate on wire taper. PMID:16606284

  1. Kinetic Simulation of Gold Nanorod Growth in Solution Based on Optical Spectra

    NASA Astrophysics Data System (ADS)

    Wang, Ying-ying; Li, Bo-xuan; Vdovic, Silvije; Wang, Xue-fei; Xia, An-dong

    2012-04-01

    By monitoring the time evolution of the optical absorption spectrum corresponding to dynamic information of aspect ratio (AR) and volume, we succeeded in following the growth kinetics of gold nanorods. The results indicate that the rods growth consists of two stages: seeds develop into rods with a fast AR increase and the rods grow big with constant AR. Here, a charge transfer model, involving positive charge transfer from Au(I) to seed and neutralization by electron from ascorbic acid, has been introduced to explain the autocatalysis mechanism of rod growth. The good agreement between the numerical simulation based on this model and experimental results supports the proposed mechanism.

  2. Lack of a unique kinetic pathway in the growth and decay of Pluronic micelles.

    PubMed

    Arranja, Alexandra; Waton, Gilles; Schosseler, François; Mendes, Eduardo

    2016-01-21

    We report kinetic experiments on dilute brine solutions of P84, P94 and P104 Pluronic copolymer micelles. The growth and the decay of micelles after temperature steps are measured by non-standard time resolved multi-angle photon correlation spectroscopy. Several concurrent mechanisms are at work during the very slow equilibration of solutions, namely insertion/expulsion of unimers, aggregation/dissociation of micellar aggregates, and fusion/budding of micellar aggregates. Their relative rates determine both the kinetic pathways and the morphologies of the micellar assemblies, which depend markedly on modest changes in the copolymer molecular weight. For the typical Pluronic copolymers investigated here, none of these elementary processes can be neglected if the resulting morphology is to be explained. This feature imposes multiple kinetic behaviours where growth and decay of Pluronic micelles become strongly dependent on the thermal history. We point out to some possible shortcomings in the studies of micellar growth kinetics by light scattering techniques. Extensive time-resolved multiangle measurements are a prerequisite for avoiding these pitfalls. PMID:26523415

  3. Kinetic characteristics and modelling of growth and substrate removal by Alcaligenes faecalis strain NR.

    PubMed

    Chen, Jie; Zhao, Bin; An, Qiang; Wang, Xia; Zhang, Yi Xin

    2016-04-01

    Alcaligenes faecalis strain NR has the capability of simultaneous ammonium and organic carbon removal under sole aerobic conditions. The growth and substrate removal characteristics of A. faecalis strain NR were studied and appropriate kinetic models were developed. The maximum substrate removal rate of NH4 (+)-N and TOC were determined as 2.27 mg NH4 (+)-N/L/h and 30.00 mg TOC/L/h, respectively with initial NH4 (+)-N = 80 mg/L and TOC = 800 mg/L. Single-substrate models and double-substrate models based on Monod, Contois, Moser and Teissier were employed to describe the bioprocess kinetic coefficients. As a result, two double-substrate models, Teissier-Contois and Contois-Contois, were considered to be appropriate to model growth kinetics with both NH4 (+)-N and TOC as limiting substrates. The kinetic constants of maximum growth rate (μ max) and half-saturation constant (K S and B S) were obtained by solving multiple equations with regression. This work can be used to further understand and predict the performance of heterotrophic nitrifiers, and thus provides specific guidance of these functional strains in practical wastewater treatment process. PMID:26796583

  4. Kinetics of cesium lead halide perovskite nanoparticle growth; focusing and de-focusing of size distribution

    NASA Astrophysics Data System (ADS)

    Koolyk, Miriam; Amgar, Daniel; Aharon, Sigalit; Etgar, Lioz

    2016-03-01

    In this work we study the kinetics of cesium lead halide perovskite nanoparticle (NP) growth; the focusing and de-focusing of the NP size distribution. Cesium lead halide perovskite NPs are considered to be attractive materials for optoelectronic applications. Understanding the kinetics of the formation of these all-inorganic perovskite NPs is critical for reproducibly and reliably generating large amounts of uniformly sized NPs. Here we investigate different growth durations for CsPbI3 and CsPbBr3 NPs, tracking their growth by high-resolution transmission electron microscopy and size distribution analysis. As a result, we are able to provide a detailed model for the kinetics of their growth. It was observed that the CsPbI3 NPs exhibit focusing of the size distribution in the first 20 seconds of growth, followed by de-focusing over longer growth durations, while the CsPbBr3 NPs show de-focusing of the size distribution starting from the beginning of the growth. The monomer concentration is depleted faster in the case of CsPbBr3 than in the case of CsPbI3, due to faster diffusion of the monomers, which increases the critical radius and results in de-focusing of the population. Accordingly, focusing is not observed within 40 seconds of growth in the case of CsPbBr3. This study provides important knowledge on how to achieve a narrow size distribution of cesium lead halide perovskite NPs when generating large amounts of these promising, highly luminescent NPs.In this work we study the kinetics of cesium lead halide perovskite nanoparticle (NP) growth; the focusing and de-focusing of the NP size distribution. Cesium lead halide perovskite NPs are considered to be attractive materials for optoelectronic applications. Understanding the kinetics of the formation of these all-inorganic perovskite NPs is critical for reproducibly and reliably generating large amounts of uniformly sized NPs. Here we investigate different growth durations for CsPbI3 and CsPbBr3 NPs, tracking

  5. Insitu Measurements and Modeling of Carbon Nanotube Array Growth Kinetics during Chemical Vapor Deposition

    SciTech Connect

    Puretzky, Alexander A; Geohegan, David B; Jesse, Stephen; Ivanov, Ilia N; Eres, Gyula

    2005-01-01

    Direct measurements of carbon nanotube growth kinetics are described based upon time-resolved reflectivity (TRR) of a HeNe laser beam from vertically aligned nanotube arrays (VANTAs) as they grow during chemical vapor deposition (CVD). Growth rates and terminal lengths were measured in situ for VANTAs growing during CVD between 535 C and 900 C on Si substrates with evaporated Al/Fe/Mo multi-layered catalysts and acetylene feedstock at different feedstock partial pressures. Methods of analysis of the TRR signals are presented to interpret catalyst particle formation and oxidation, as well as the porosity of the VANTAs. A rate-equation model is developed to describe the measured kinetics in terms of activation energies and rate constants for surface carbon formation and diffusion on the catalyst nanoparticle, nanotube growth, and catalyst over-coating. Taken together with the TRR data, this model enables basic understanding and optimization of growth conditions for any catalyst/feedstock combination. The model lends insight into the main processes responsible for the growth of VANTAs, the measured number of walls in the nanotubes at different temperatures, conditions for growth of single-wall carbon nanotube arrays, and likely catalyst poisoning mechanisms responsible for the sharp decline in growth rates observed at high temperatures.

  6. Phosphate-limited growth of the marine diatom Thalassiosira weissflogii (Bacillariophyceae): evidence of non-monod growth kinetics(1).

    PubMed

    Laws, Edward A; Pei, Shaofeng; Bienfang, Paul

    2013-04-01

    The marine diatom Thalassiosira weissflogii (Grunow) G. A. Fryxell & Hasle was grown in a chemostat over a series of phosphate-limited growth rates. Ambient substrate concentrations were determined from bioassays involving picomolar spikes of (33) P-labeled phosphate, and maximum uptake rates were determined from analogous bioassays that included the addition of micromolar concentrations of unlabeled phosphate and tracer concentrations of (33) P. The relationship between cell phosphorus quotas and growth rates was well described by the Droop equation. Maximum uptake rates of phosphate spikes were several orders of magnitude higher than steady state uptake rates. Despite the large size of the T. weissflogii cells, diffusion of phosphate through the boundary layer around the cells had little effect on growth kinetics, in part because the cellular N:P ratios exceeded the Redfield ratio at all growth rates. Fitting the Monod equation to the experimental data produced an estimate of the nutrient-saturated growth rate that was ~50% greater than the maximum growth rate observed in batch culture. A modified hyperbolic equation with a curvature that is a maximum in magnitude at positive growth rates gave a better fit to the data and an estimate of the maximum growth rate that was consistent with observations. The failure of the Monod equation to describe the data may reflect a transition from substrate to co-substrate limitation and/or the presence of an inducible uptake system. PMID:27008513

  7. Directional grain growth from anisotropic kinetic roughening of grain boundaries in sheared colloidal crystals

    PubMed Central

    Gokhale, Shreyas; Nagamanasa, K. Hima; Santhosh, V.; Sood, A. K.; Ganapathy, Rajesh

    2012-01-01

    The fabrication of functional materials via grain growth engineering implicitly relies on altering the mobilities of grain boundaries (GBs) by applying external fields. Although computer simulations have alluded to kinetic roughening as a potential mechanism for modifying GB mobilities, its implications for grain growth have remained largely unexplored owing to difficulties in bridging the widely separated length and time scales. Here, by imaging GB particle dynamics as well as grain network evolution under shear, we present direct evidence for kinetic roughening of GBs and unravel its connection to grain growth in driven colloidal polycrystals. The capillary fluctuation method allows us to quantitatively extract shear-dependent effective mobilities. Remarkably, our experiments reveal that for sufficiently large strains, GBs with normals parallel to shear undergo preferential kinetic roughening, resulting in anisotropic enhancement of effective mobilities and hence directional grain growth. Single-particle level analysis shows that the mobility anisotropy emerges from strain-induced directional enhancement of activated particle hops normal to the GB plane. We expect our results to influence materials fabrication strategies for atomic and block copolymeric polycrystals as well. PMID:23169661

  8. On the Effect of Atoms in Solid Solution on Grain Growth Kinetics

    NASA Astrophysics Data System (ADS)

    Hersent, Emmanuel; Marthinsen, Knut; Nes, Erik

    2014-10-01

    The discrepancy between the classical grain growth law in high purity metals (grain size ) and experimental measurements has long been a subject of debate. It is generally believed that a time growth exponent less than 1/2 is due to small amounts of impurity atoms in solid solution even in high purity metals. The present authors have recently developed a new approach to solute drag based on solute pinning of grain boundaries, which turns out to be mathematically simpler than the classic theory for solute drag. This new approach has been combined with a simple parametric law for the growth of the mean grain size to simulate the growth kinetics in dilute solid solution metals. Experimental grain growth curves in the cases of aluminum, iron, and lead containing small amounts of impurities have been well accounted for.

  9. Investigation of nucleation and crystal growth kinetics of nickel manganese oxalates

    NASA Astrophysics Data System (ADS)

    Aoun-Habbache, Montaha; Guillemet-Fritsch, Sophie; Lemaître, Jacques; Jones, Alan

    2005-06-01

    The nucleation and the crystal growth rates of mixed nickel manganese oxalates have been determined from the changes of the ionic concentration of the solution and the crystal size distribution during the precipitation process within a supersaturation range 0-0.1 M. Thermodynamic solubility calculations have been used to identify the different species contributing the precipitation reaction and for estimation of the thermodynamic constant. Experimental data show that the nucleation rate of mixed nickel manganese oxalate in this supersaturation range is consistent with a primary heterogeneous mechanism and was found to obey to an exponential law. The crystal growth rates indicate a surface-integration-controlled mechanism with a first-order law with respect to the supersaturation.

  10. Growth kinetics and complex characterization of PECVD SiO x N y dielectric films

    NASA Astrophysics Data System (ADS)

    Pereyaslavtsev, A.; Sokolov, I.

    2016-05-01

    This paper is devoted to the study of patterns of dielectric film growth depending on the parameters of the plasma chemical deposition process. The study has revealed the influence of the basic reagents’ content on the changes in surface morphology, breakdown voltage and stoichiometry (transition to the intermediate oxidation states of silicon) of dielectric films. Furthermore, an exponential pattern of the change in the films’ growth rate has been registered. When increasing the N/Si ratio, a nonlinear dependence of the change in the dielectric films’ band gap has been recorded. When increasing the SiH4/N2O ratio, a shift of the peak positions of the interband interactions relative to the band gap boundaries has been detected. The dataset on breakdown voltage and band structure suggests a certain optimum of barrier properties of SiO x N y dielectric films at the basic reagents’ ratio close to 0.3–0.4.

  11. Kinetic modeling of Moorella thermoacetica growth on single and dual-substrate systems.

    PubMed

    Schmitt, Elliott; Bura, Renata; Gustafson, Rick; Ehsanipour, Mandana

    2016-10-01

    Acetic acid is an important chemical raw material that can be produced directly from sugars in lignocellulosic biomass. Development of kinetic models that capture the bioconversion dynamics of multiple sugar systems will be critical to optimization and process control in future lignocellulosic biorefinery processes. In this work, a kinetic model was developed for the single- and dual-substrate conversion of xylose and glucose to acetic acid using the acetogen Moorella thermoacetica. Batch fermentations were performed experimentally at 20 g L(-1) total sugar concentration using synthetic glucose, xylose, and a mixture of glucose and xylose at a 1:1 ratio. The product yield, calculated as total product formed divided by total sugars consumed, was 79.2, 69.9, and 69.7 % for conversion of glucose, xylose, and a mixture of glucose and xylose (1:1 ratio), respectively. During dual-substrate fermentation, M. thermoacetica demonstrated diauxic growth where xylose (the preferred substrate) was almost entirely consumed before consumption of glucose began. Kinetic parameters were similar for the single-substrate fermentations, and a strong linear correlation was determined between the maximum specific growth rate μ max and substrate inhibition constant, K s . Parameters estimated for the dual-substrate system demonstrated changes in the specific growth rate of both xylose and glucose consumption. In particular, the maximum growth rate related to glucose tripled compared to the single-substrate system. Kinetic growth is affected when multiple substrates are present in a fermentation system, and models should be developed to reflect these features. PMID:27262717

  12. Review of "Going Exponential: Growing the Charter School Sector's Best"

    ERIC Educational Resources Information Center

    Garcia, David

    2011-01-01

    This Progressive Policy Institute report argues that charter schools should be expanded rapidly and exponentially. Citing exponential growth organizations, such as Starbucks and Apple, as well as the rapid growth of molds, viruses and cancers, the report advocates for similar growth models for charter schools. However, there is no explanation of…

  13. Kinetics and Mechanisms of Cadmium Carbonate Heteroepitaxial Growth at the Calcite (101¯4) Surface

    SciTech Connect

    Xu, Man; Kovarik, Libor; Arey, Bruce W.; Felmy, Andrew R.; Rosso, Kevin M.; Kerisit, Sebastien N.

    2014-06-01

    Elucidating the kinetics and mechanisms of heteroepitaxial nucleation and growth at mineral-water interfaces is essential to understanding surface reactivity in geochemical systems. In the present work, the formation of heteroepitaxial cadmium carbonate coatings at calcite-water interfaces was investigated by exposing calcite (10-14) surfaces to Cd-bearing aqueous solutions. In situ atomic force microscopy (AFM) was employed as the primary technique. The AFM results indicate that the heteroepitaxial growth of cadmium carbonate proceeds via three different mechanisms depending on the initial supersaturation of the aqueous solution: advancement of existing steps, nucleation and growth of three-dimensional (3D) islands, and nucleation and spread of two-dimensional (2D) nuclei. The 3D islands and 2D nuclei exhibit different morphologies and growth kinetics. The effects of supersaturation on heteroepitaxial growth mechanisms can be interpreted in terms of the free energy barrier for nucleation. At low initial supersaturation, where 3D nucleation dominates, it is hypothesized, from the growth rate and morphology of the 3D islands observed with AFM, that the crystallization of the overgrowth follows a non-classical pathway involving the formation of a surface precursor that is not fully crystalline, whereas high supersaturation favors the formation of crystalline 2D nuclei whose morphology is based on the atomic structure of the calcite substrate. Cross-sectional transmission electron microscopy (TEM) images reveal that the atomic structure of the interface between the cadmium carbonate coating and calcite shows perfect, dislocation-free epitaxy.

  14. Kinetics and mechanisms of cadmium carbonate heteroepitaxial growth at the calcite (10 1bar 4) surface

    NASA Astrophysics Data System (ADS)

    Xu, Man; Kovarik, Libor; Arey, Bruce W.; Felmy, Andrew R.; Rosso, Kevin M.; Kerisit, Sebastien

    2014-06-01

    Elucidating the kinetics and mechanisms of heteroepitaxial nucleation and growth at mineral-water interfaces is essential to understanding surface reactivity in geochemical systems. In the present work, the formation of heteroepitaxial cadmium carbonate coatings at calcite-water interfaces was investigated by exposing calcite (10 1bar 4) surfaces to Cd-bearing aqueous solutions. In situ atomic force microscopy (AFM) was employed as the primary technique. The AFM results indicate that the heteroepitaxial growth of cadmium carbonate proceeds via three different mechanisms depending on the initial supersaturation of the aqueous solution: advancement of existing steps, nucleation and growth of three-dimensional (3D) islands, and nucleation and spread of two-dimensional (2D) nuclei. The 3D islands and 2D nuclei exhibit different morphologies and growth kinetics. The effects of supersaturation on heteroepitaxial growth mechanisms can be interpreted in terms of the free energy barrier for nucleation. At low initial supersaturation, where 3D nucleation dominates, it is hypothesized, from the growth rate and morphology of the 3D islands observed with AFM, that the crystallization of the overgrowth follows a non-classical pathway involving the formation of a surface precursor that is not fully crystalline, whereas high supersaturation favors the formation of crystalline 2D nuclei whose morphology is based on the atomic structure of the calcite substrate. Cross-sectional transmission electron microscopy (TEM) images reveal that the atomic structure of the interface between the cadmium carbonate coating and calcite shows perfect, dislocation-free epitaxy.

  15. Estimation of the growth kinetics for the cooling crystallisation of paracetamol and ethanol solutions

    NASA Astrophysics Data System (ADS)

    Mitchell, Niall A.; Ó'Ciardhá, Clifford T.; Frawley, Patrick J.

    2011-08-01

    This work details the estimation of the growth kinetics of paracetamol in ethanol solutions for cooling crystallisation processes, by means of isothermal seeded batch experiments. The growth kinetics of paracetamol crystals were evaluated in isolation, with the growth rate assumed to be size independent. Prior knowledge of the Metastable Zone Width (MSZW) was required, so that supersaturation ratios of 1.7-1.1 could be induced in solution without the occurrence of nucleation. The technique involved the utilisation of two in-situ Process Analytical Techniques (PATs), with a Focused Beam Reflectance Measurement (FBRM ®) utilised to ensure that negligible nucleation occurred and an Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) probe employed for online monitoring of solute concentration. Initial Particle Size Distributions (PSDs) were used in conjunction with desupersaturation profiles to determine the growth rate as a function of temperature and supersaturation. Furthermore, the effects of seed loading and size on the crystal growth rate were investigated. A numerical model, incorporating the population balance equation and the method of moments, was utilised to describe the crystal growth process. Experimental parameters were compared to the model simulation, with the accuracy of the model validated by means of the final product PSDs and solute concentration.

  16. Nonlinear Growth Kinetics of Breast Cancer Stem Cells: Implications for Cancer Stem Cell Targeted Therapy

    NASA Astrophysics Data System (ADS)

    Liu, Xinfeng; Johnson, Sara; Liu, Shou; Kanojia, Deepak; Yue, Wei; Singn, Udai; Wang, Qian; Wang, Qi; Nie, Qing; Chen, Hexin

    2013-08-01

    Cancer stem cells (CSCs) have been identified in primary breast cancer tissues and cell lines. The CSC population varies widely among cancerous tissues and cell lines, and is often associated with aggressive breast cancers. Despite of intensive research, how the CSC population is regulated within a tumor is still not well understood so far. In this paper, we present a mathematical model to explore the growth kinetics of CSC population both in vitro and in vivo. Our mathematical models and supporting experiments suggest that there exist non-linear growth kinetics of CSCs and negative feedback mechanisms to control the balance between the population of CSCs and that of non-stem cancer cells. The model predictions can help us explain a few long-standing questions in the field of cancer stem cell research, and can be potentially used to predict the efficicacy of anti-cancer therapy.

  17. Growth kinetics and island evolution during double-pulsed molecular beam epitaxy of InN

    NASA Astrophysics Data System (ADS)

    Kraus, A.; Hein, C.; Bremers, H.; Rossow, U.; Hangleiter, A.

    2016-06-01

    The kinetic processes of InN growth using alternating source fluxes with sub-monolayer In pulses in plasma-assisted molecular beam epitaxy have been investigated. Growth at various temperatures reveals the existence of two growth regimes. While growth at low temperatures is solely governed by surface diffusion, a combination of decomposition, desorption, and diffusion becomes decisive at growth temperatures of 470 °C and above. At this critical temperature, the surface morphology changes from a grainy structure to a structure made of huge islands. The formation of those islands is attributed to the development of an indium adlayer, which can be observed via reflection high energy electron diffraction monitoring. Based on the growth experiments conducted at temperatures below TGrowth = 470 °C, an activation energy for diffusion of 0.54 ± 0.02 eV has been determined from the decreasing InN island density. A comparison between growth on metalorganic vapor phase epitaxy GaN templates and pseudo bulk GaN indicates that step edges and dislocations are favorable nucleation sites. Based on the results, we developed a growth model, which describes the main mechanisms of the growth.

  18. Intrinsic Kinetics Fluctuations as Cause of Growth Inhomogeneity in Protein Crystals

    NASA Technical Reports Server (NTRS)

    Vekilov, Peter G.; Rosenberger, Franz

    1998-01-01

    Intrinsic kinetics instabilities in the form of growth step bunching during the crystallization of the protein lysozyme from solution were characterized by in situ high-resolution optical interferometry. Compositional variations (striations) in the crystal, which potentially decrease its utility, e.g., for molecular structure studies by diffraction methods, were visualized by polarized light reflection microscopy. A spatiotemporal correlation was established between the sequence of moving step bunches and the striations.

  19. Effect of clofibrate on the growth-kinetics of the murine P 1798(sc) lymphoma.

    PubMed Central

    Ubeira, F. M.; Seoane, R.; Puentes, E.; Faro, J.; Regueiro, B. J.

    1983-01-01

    Clofibrate (CPIB) is a drug applied as an antilipidaemic agent in mammals. In this work we have tested its efficacy in vivo on the growth kinetics of P 1798(sc) lymphoma transplanted to recipient (BALB/c x AKR)F1 mice. Our results show a facilitation of the tumour growth rate in treated recipients. This fact may be related to an effect of the agent on the recipient which produces a decrease in the immune response as was confirmed on testing CPIB on thymus-dependent antigens in haemolytic plaque assays. Images Figure 3 PMID:6351886

  20. Mg doping and its effect on the semipolar GaN(1122) growth kinetics

    SciTech Connect

    Lahourcade, L.; Wirthmueller, A.; Monroy, E.; Chauvat, M. P.; Ruterana, P.; Laufer, A.; Eickhoff, M.

    2009-10-26

    We report the effect of Mg doping on the growth kinetics of semipolar GaN(1122) synthesized by plasma-assisted molecular-beam epitaxy. Mg tends to segregate on the surface, inhibiting the formation of the self-regulated Ga film which is used as a surfactant for the growth of undoped and Si-doped GaN(1122). We observe an enhancement of Mg incorporation in GaN(1122) compared to GaN(0001). Typical structural defects or polarity inversion domains found in Mg-doped GaN(0001) were not observed for the semipolar films investigated in the present study.

  1. Generalization of Monod kinetics for analysis of growth data with substrate inhibition

    SciTech Connect

    Luong, J.H.T.

    1987-02-05

    The inhibitory effect of butanol on yeast growth has been studied for the strain Candida utilis ATCC 8205 growing aerobically on butanol under batch conditions. A mathematical expression was then proposed to fit the kinetic pattern of butanol inhibition on the specific growth rate. The maximum allowable butanol concentration above which cells do not grow was predicted to be 9.16 g/l. The proposed model appears to accurately represent the experimental data obtained in this study and the literature data developed for a variety of batch culture systems at widely ranging substrate concentrations. 20 references.

  2. Investigation of the kinetics of surface-limited thin film growth of SiGe alloys

    SciTech Connect

    Sharp, J.W. . Dept. of Physics and Astronomy); Eres, G. )

    1992-11-01

    The kinetics of surface-limited thin film growth of SiGe alloys was investigated by time-resolved surface differential reflectometry. The source gas, mixtures of disilane and digermane in ratios from 1:1 to 6:1 in helium carrier gas, was delivered to a heated substrate by a fast-acting pulsed molecular jet valve. The adsorption and desorption kinetics were determined from the surface differential reflectance signal obtained using a polarized, high-stability HeNe probe laser. Thin film growth was studied in the temperature range of 400--600[degrees]C on Si(001) substrates. Preferential incorporation of digermane into the film produces an alloy composition that depends upon but does not mirror the gas composition. For all gas mixtures, there is a strong temperature dependence of the rate at which the adsorption layer decomposes into film plus by-product. The kinetic data and the alloy compositions provide a basis for deducing some of the characteristics of the reaction sequence that leads to SiGe alloy thin film growth.

  3. Investigation of the kinetics of surface-limited thin film growth of SiGe alloys

    SciTech Connect

    Sharp, J.W.; Eres, G.

    1992-11-01

    The kinetics of surface-limited thin film growth of SiGe alloys was investigated by time-resolved surface differential reflectometry. The source gas, mixtures of disilane and digermane in ratios from 1:1 to 6:1 in helium carrier gas, was delivered to a heated substrate by a fast-acting pulsed molecular jet valve. The adsorption and desorption kinetics were determined from the surface differential reflectance signal obtained using a polarized, high-stability HeNe probe laser. Thin film growth was studied in the temperature range of 400--600{degrees}C on Si(001) substrates. Preferential incorporation of digermane into the film produces an alloy composition that depends upon but does not mirror the gas composition. For all gas mixtures, there is a strong temperature dependence of the rate at which the adsorption layer decomposes into film plus by-product. The kinetic data and the alloy compositions provide a basis for deducing some of the characteristics of the reaction sequence that leads to SiGe alloy thin film growth.

  4. Exponential increases of RNA virus fitness during large population transmissions.

    PubMed Central

    Novella, I S; Duarte, E A; Elena, S F; Moya, A; Domingo, E; Holland, J J

    1995-01-01

    The great adaptability shown by RNA viruses is a consequence of their high mutation rates. Here we investigate the kinetics of virus fitness gains during repeated transfers of large virus populations in cell culture. Results always show that fitness increases exponentially. Low fitness clones exhibit regular increases observed as biphasic periods of exponential evolutionary improvement, while neutral clones show monophasic kinetics. These results are significant for RNA virus epidemiology, optimal handling of attenuated live virus vaccines, and routine laboratory procedures. PMID:7597039

  5. Effect of nitrogen and vanadium on austenite grain growth kinetics of a low alloy steel

    SciTech Connect

    Stasko, Renata . E-mail: rstasko@ap.Cracow.pl; Adrian, Henryk . E-mail: adrian@uci.agh.edu.pl; Adrian, Anna . E-mail: adrian@metal.agh.edu.pl

    2006-06-15

    Austenite grain growth kinetics in a steel containing 0.4% C, 1.8% Cr with different nitrogen contents (in the range 0.0038-0.0412%) and a micralloying addition of 0.078% V were investigated. The investigations were carried out in an austenitising temperature range of 840-1200 deg. C for 30 min. The results of investigations showed that N promotes the grain growth of austenite. The microalloying addition of vanadium protects the austenite grain growth because of carbonitride V(C,N) precipitation and the grain boundary pinning effect of undissolved particles of V(C,N). Using a thermodynamic model, the carbonitride V(C,N) content, undissolved at the austenitising temperature was calculated. At temperatures when a coarsening and dissolution of carbonitride occurs, the austenite grains start to growth. The effect of nitrogen on the type of chord length distribution of austenite grains was analysed.

  6. Effects of Alloying on Nanoscale Grain Growth in Substitutional Binary Alloy System: Thermodynamics and Kinetics

    NASA Astrophysics Data System (ADS)

    Peng, Haoran; Chen, Yuzeng; Liu, Feng

    2015-11-01

    Applying the regular solution model, the Gibbs free energy of mixing for substitutional binary alloy system was constructed. Then, thermodynamic and kinetic parameters, e.g., driving force and solute drag force, controlling nanoscale grain growth of substitutional binary alloy systems were derived and compared to their generally accepted definitions and interpretations. It is suggested that for an actual grain growth process, the classical driving force P = γ/D ( γ the grain boundary (GB) energy, D the grain size) should be replaced by a new expression, i.e., P^' = γ /D - Δ P . Δ P represents the energy required to adjust nonequilibrium solute distribution to equilibrium solute distribution, which is equivalent to the generally accepted solute drag force impeding GB migration. By incorporating the derived new driving force for grain growth into the classical grain growth model, the reported grain growth behaviors of nanocrystalline Fe-4at. pct Zr and Pd-19at. pct Zr alloys were analyzed. On this basis, the effect of thermodynamic and kinetic parameters ( i.e., P, Δ P and the GB mobility ( M GB)) on nanoscale grain growth, were investigated. Upon grain growth, the decrease of P is caused by the reduction of γ as a result of solute segregation in GBs; the decrease of Δ P is, however, due to the decrease of grain growth velocity; whereas the decrease of M GB is attributed to the enhanced difference of solute molar fractions between the bulk and the GBs as well as the increased activation energy for GB diffusion.

  7. A phase-field model coupled with lattice kinetics solver for modeling crystal growth in furnaces

    SciTech Connect

    Lin, Guang; Bao, Jie; Xu, Zhijie; Tartakovsky, Alexandre M.; Henager, Charles H.

    2014-02-02

    In this study, we present a new numerical model for crystal growth in a vertical solidification system. This model takes into account the buoyancy induced convective flow and its effect on the crystal growth process. The evolution of the crystal growth interface is simulated using the phase-field method. Two novel phase-field models are developed to model the crystal growth interface in vertical gradient furnaces with two temperature profile setups: 1) fixed wall temperature profile setup and 2) time-dependent temperature profile setup. A semi-implicit lattice kinetics solver based on the Boltzmann equation is employed to model the unsteady incompressible flow. This model is used to investigate the effect of furnace operational conditions on crystal growth interface profiles and growth velocities. For a simple case of macroscopic radial growth, the phase-field model is validated against an analytical solution. Crystal growth in vertical gradient furnaces with two temperature profile setups have been also investigated using the developed model. The numerical simulations reveal that for a certain set of temperature boundary conditions, the heat transport in the melt near the phase interface is diffusion dominant and advection is suppressed.

  8. Comparison of growth kinetics for healthy and heat-injured Listeria monocytogenes in eight enrichment broths.

    PubMed

    Silk, Todd M; Roth, Tatiana M T; Donnelly, C W

    2002-08-01

    Detection of Listeria in food products is often limited by performance of enrichment media used to support growth of Listeria to detectable levels. In this study, growth curves were generated using healthy and heat-injured Listeria monocytogenes strain F5069 in three nonselective and five selective enrichment broths. Nonselective enrichment media included the current Food and Drug Administration Bacteriological Analytical Manual Listeria enrichment broth base (BAM), Listeria repair broth (LRB), and Trypticase soy broth. Selective enrichment media included BAM with selective agents and LRB with selective agents, BCM L. monocytogenes preenrichment broth, Fraser broth, and UVM-modified Listeria enrichment broth. The Gompertz equation was used to model the growth of L. monocytogenes. Gompertz parameters were used to calculate exponential growth rate, lag-phase duration (LPD), generation time, maximum population density (MPD), and time required for repair of injured cells. Statistical differences (P < 0.05) in broth performance were noted for LPD and MPD when healthy and injured cells were inoculated into the broths. With the exception of Fraser broth, there were no significant differences in the time required for the repair of injured cells. Results indicate that the distinction between selective and nonselective broths in their ability to grow healthy Listeria and to repair sublethally injured cells is not solely an elementary issue of presence or absence of selective agents. PMID:12182490

  9. Quantifying the Nucleation and Growth Kinetics of Microwave Nanochemistry Enabled by in Situ High-Energy X-ray Scattering.

    PubMed

    Liu, Qi; Gao, Min-Rui; Liu, Yuzi; Okasinski, John S; Ren, Yang; Sun, Yugang

    2016-01-13

    The fast reaction kinetics presented in the microwave synthesis of colloidal silver nanoparticles was quantitatively studied, for the first time, by integrating a microwave reactor with in situ X-ray diffraction at a high-energy synchrotron beamline. Comprehensive data analysis reveals two different types of reaction kinetics corresponding to the nucleation and growth of the Ag nanoparticles. The formation of seeds (nucleation) follows typical first-order reaction kinetics with activation energy of 20.34 kJ/mol, while the growth of seeds (growth) follows typical self-catalytic reaction kinetics. Varying the synthesis conditions indicates that the microwave colloidal chemistry is independent of concentration of surfactant. These discoveries reveal that the microwave synthesis of Ag nanoparticles proceeds with reaction kinetics significantly different from the synthesis present in conventional oil bath heating. The in situ X-ray diffraction technique reported in this work is promising to enable further understanding of crystalline nanomaterials formed through microwave synthesis. PMID:26625184

  10. Dynamic kinetic analysis of growth of Listeria monocytogenes in a simulated comminuted, non-cured cooked pork product

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to directly construct a tertiary growth model for Listeria monocytogenes in cooked pork and simultaneously determine the kinetic parameters using a combination of dynamic and isothermal growth curves. Growth studies were conducted using a cocktail of 5 strains of L. ...

  11. Simulation studies on shape and growth kinetics for fractal aggregates in aerosol and colloidal systems

    NASA Astrophysics Data System (ADS)

    Heinson, William Raymond

    The aim of this work is to explore, using computational techniques that simulate the motion and subsequent aggregation of particles in aerosol and colloidal systems, many common but not well studied systems that form fractal clusters. Primarily the focus is on cluster shape and growth kinetics. The structure of clusters made under diffusion limited cluster-cluster aggregation (DLCA) is looked at. More specifically, the shape anisotropy is found to have an inverse relationship on the scaling prefactor k0 and have no effect on the fractal dimension Df . An analytical model that predicts the shape and fractal dimension of diffusion limited cluster-cluster aggregates is tested and successfully predicts cluster shape and dimensionality. Growth kinetics of cluster-cluster aggregation in the free molecular regime where the system starts with ballistic motion and then transitions to diffusive motion as the aggregates grow in size is studied. It is shown that the kinetic exponent will crossover from the ballistic to the diffusional values and the onset of this crossover is predicted by when the nearest neighbor Knudsen number reaches unity. Simulations were carried out for a system in which molten particles coalesce into spheres, then cool till coalescing stops and finally the polydispersed monomers stick at point contacts to form fractal clusters. The kinetic exponent and overall cluster structure for these aggregates was found to be in agreement with DLCA that started with monodispersed monomers. Colloidal aggregation in the presence of shear was studied in detail. Study of a colloidal system characterized a by short-range attractive potential showed that weak shear enhanced the aggregation process. Strong shear led to fragmentation and subsequent nucleation as cluster growth rebounded after an induction time.

  12. Deletion of the Escherichia coli pseudouridine synthase gene truB blocks formation of pseudouridine 55 in tRNA in vivo, does not affect exponential growth, but confers a strong selective disadvantage in competition with wild-type cells.

    PubMed Central

    Gutgsell, N; Englund, N; Niu, L; Kaya, Y; Lane, B G; Ofengand, J

    2000-01-01

    Previous work from this laboratory (Nurse et al., RNA, 1995, 1:102-112) established that TruB, a pseudouridine (psi) synthase from Escherichia coli, was able to make psi55 in tRNA transcripts but not in transcripts of full-length or fragmented 16S or 23S ribosomal RNAs. By deletion of the truB gene, we now show that TruB is the only protein in E. coli able to make psi55 in vivo. Lack of TruB and psi55 did not affect the exponential growth rate but did confer a strong selective disadvantage on the mutant when it was competed against wild-type. The negative selection did not appear to be acting at either the exponential or stationary phase. Transformation with a plasmid vector conferring carbenicillin resistance and growth in carbenicillin markedly increased the selective disadvantage, as did growth at 42 degrees C, and both together were approximately additive such that three cycles of competitive growth sufficed to reduce the mutant strain to approximately 0.2% of its original value. The most striking finding was that all growth effects could be reversed by transformation with a plasmid carrying a truB gene coding for a D48C mutation in TruB. Direct analysis showed that this mutant did not make psi55 under the conditions of the competition experiment. Therefore, the growth defect due to the lack of TruB must be due to the lack of some other function of the protein, possibly an RNA chaperone activity, but not to the absence of psi55. PMID:11142385

  13. Implications of solution chemistry effects: Direction-specific restraints on the step kinetics of calcite growth

    NASA Astrophysics Data System (ADS)

    Hong, Mina; Teng, H. Henry

    2014-09-01

    Classical crystallization models successfully depict the dependence of growth kinetics on thermodynamic driving force but cannot predict the roles of solution chemistry. Yet, it has become increasingly clear that crystal growth rate at fixed supersaturations depends on pH, ionic strength, and the relative abundance of cations and anions in the parent solutions. We conducted experiments to isolate the effect of individual solution-chemistry parameters on calcite step growth kinetics. Our results revealed a distinct correlation between step velocity and pH in acute and obtuse directions and a simultaneous trend change at pH ∼9.5. Step speeds varied with solution stoichiometry, and each direction reached its maximal rate at a different [Ca]/[CO32-] value. In addition, the solution cation/anion at which maximal step speed occurred appeared to be pH dependent as well. Limited effect of ionic strength on step growth was observed in the obtuse direction at low background electrolyte concentrations, but no obvious change was found for growth at the acute side. We proposed a growth model based upon independent incorporation of cations and anions and interpreted these observations as: (1) solute constituents enter kinks through direct solution diffusion at obtuse steps but surface diffusion at acute steps; (2) growth is limited by Ca2+ dehydration at the obtuse side, but by surface adsorption and reorientation and rearrangement of CO32- in the acute direction; and (3) background electrolyte (NaCl in our study) competes with solutes for surface sites at more easily accessible kinks.

  14. Kinetics of grain growth in the weld heat-affected zone of Alloy 718

    SciTech Connect

    Radhakrishnan, B.; Thompson, R.G.

    1993-12-01

    Grain-boundary liquation occurs in the weld heat-affected zone (HAZ) of the Ni-base superalloy 718 at locations where the peak temperatures are greater than about 1,200 C. The evolution of the grain structure at the HAZ locations depends upon the interaction between the grains and the grain-boundary liquid. The evolution of grain structure in the presence of grain-boundary liquid was simulated by subjecting samples to controlled thermal cycles using resistance heating. A measurement of grain size as a function of isothermal hold at two peak temperatures of 1,200 C and 1,227 C indicated that in alloy 718, the kinetics of grain growth depended upon the prior thermal history of the alloy. In the solution-treated alloy, the presence of grain-boundary liquid did not arrest grain growth at either peak temperature. In the homogenized and aged alloy, a grain refinement was observed at the peak temperature of 1,227 C, while an arrest of grain growth was observed at a peak temperature of 1,200 C. Liquid film migration (LFM) and subgrain coalescence, either acting alone or simultaneously, are shown to explain most of the observed microstructural phenomena and the kinetics of grain growth in the alloy.

  15. Kinetics of grain growth in the weld heat-affected zone of alloy 718

    NASA Astrophysics Data System (ADS)

    Radhakrishnan, B.; Thompson, R. G.

    1993-12-01

    Grain-boundary liquation occurs in the weld heat-affected zone (HAZ) of the Ni-base superalloy 718 at locations where the peak temperatures are greater than about 1200 ‡C. The evolution of the grain structure at these HAZ locations depends upon the interaction between the grains and the grain-boundary liquid. The evolution of grain structure in the presence of grain-boundary liquid was simulated by subjecting samples to controlled thermal cycles using resistance heating. A measurement of grain size as a function of isothermal hold at two peak temperatures of 1200 ‡C and 1227 ‡C indicated that in alloy 718, the kinetics of grain growth depended upon the prior thermal history of the alloy. In the solution-treated alloy, the presence of grain-boundary liquid did not arrest grain growth at either peak temperature. In the homogenized and aged alloy, a grain refinement was observed at the peak temperature of 1227 ‡C, while an arrest of grain growth was observed at a peak temperature of 1200‡C. Liquid film migration (LFM) and subgrain coalescence, either acting alone or simultaneously, are shown to explain most of the observed microstructural phenomena and the kinetics of grain growth in the alloy.

  16. From atoms to layers: in situ gold cluster growth kinetics during sputter deposition

    NASA Astrophysics Data System (ADS)

    Schwartzkopf, Matthias; Buffet, Adeline; Körstgens, Volker; Metwalli, Ezzeldin; Schlage, Kai; Benecke, Gunthard; Perlich, Jan; Rawolle, Monika; Rothkirch, André; Heidmann, Berit; Herzog, Gerd; Müller-Buschbaum, Peter; Röhlsberger, Ralf; Gehrke, Rainer; Stribeck, Norbert; Roth, Stephan V.

    2013-05-01

    The adjustment of size-dependent catalytic, electrical and optical properties of gold cluster assemblies is a very significant issue in modern applied nanotechnology. We present a real-time investigation of the growth kinetics of gold nanostructures from small nuclei to a complete gold layer during magnetron sputter deposition with high time resolution by means of in situ microbeam grazing incidence small-angle X-ray scattering (μGISAXS). We specify the four-stage growth including their thresholds with sub-monolayer resolution and identify phase transitions monitored in Yoneda intensity as a material-specific characteristic. An innovative and flexible geometrical model enables the extraction of morphological real space parameters, such as cluster size and shape, correlation distance, layer porosity and surface coverage, directly from reciprocal space scattering data. This approach enables a large variety of future investigations of the influence of different process parameters on the thin metal film morphology. Furthermore, our study allows for deducing the wetting behavior of gold cluster films on solid substrates and provides a better understanding of the growth kinetics in general, which is essential for optimization of manufacturing parameters, saving energy and resources.The adjustment of size-dependent catalytic, electrical and optical properties of gold cluster assemblies is a very significant issue in modern applied nanotechnology. We present a real-time investigation of the growth kinetics of gold nanostructures from small nuclei to a complete gold layer during magnetron sputter deposition with high time resolution by means of in situ microbeam grazing incidence small-angle X-ray scattering (μGISAXS). We specify the four-stage growth including their thresholds with sub-monolayer resolution and identify phase transitions monitored in Yoneda intensity as a material-specific characteristic. An innovative and flexible geometrical model enables the extraction

  17. Evaluation of a kinetic model for computer simulation of growth and fermentation by Scheffersomyces (Pichia) stipitis fed D-xylose

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Scheffersomyces (formly Pichia) stipitis is a potential biocatalyst for converting lignocelluloses to ethanol because the yeast natively ferments xylose. An unstructured kinetic model based upon a system of linear differential equations has been formulated that describes growth and ethanol productio...

  18. Crystal growth kinetics in Lennard-Jones and Weeks-Chandler-Andersen systems along the solid-liquid coexistence line

    NASA Astrophysics Data System (ADS)

    Benjamin, Ronald; Horbach, Jürgen

    2015-07-01

    Kinetics of crystal-growth is investigated along the solid-liquid coexistence line for the (100), (110), and (111) orientations of the Lennard-Jones (LJ) and Weeks-Chandler-Andersen (WCA) fcc crystal-liquid interface, using non-equilibrium molecular dynamics simulations. A slowing down of the growth kinetics along the coexistence line is observed, which is due to the decrease of the melting enthalpy with increasing coexistence temperature and pressure. Other quantities such as the melting pressure and liquid self-diffusion coefficient have a comparatively lesser impact on the kinetic growth coefficient. Growth kinetics of the LJ and WCA potentials become similar at large values of the melting temperature and pressure, when both resemble a purely repulsive soft-sphere potential. Classical models of crystallization from the melt are in reasonable qualitative agreement with our simulation data. Finally, several one-phase empirical melting/freezing rules are studied with respect to their validity along the coexistence line.

  19. Domain growth kinetics in the isosceles triangular Ising antiferromagnet CoNb2O6

    NASA Astrophysics Data System (ADS)

    Kobayashi, S.; Okano, H.; Jogetsu, T.; Miyamoto, J.; Mitsuda, S.

    2004-04-01

    We have studied the domain-growth kinetics of fourfold-degenerate antiferromagnetic (AF) and threefold-degenerate ferrimagnetic states in the isosceles triangular Ising antiferromagnet CoNb2O6 by ac susceptibility measurements and Monte Carlo simulations. In both magnetic phases ac susceptibility after the field quench is found to decrease with time according to the power-growth law with an universal growth exponent n=0.21±0.01. The prefactor in the power-growth law suggests that the zero-field growth of the AF state is strongly suppressed by the application of magnetic fields along the direction perpendicular to the frustrated isosceles-triangular lattice. Monte Carlo results show the unusual domain growth dominated by the reversal of the free magnetic spins near favorable domain walls where the exchange field is effectively canceled out due to the isosceles triangular geometry of spins. The obtained domain configuration strongly supports our neutron-diffraction results that revealed the temporal shift of the magnetic Bragg peak position during the growth.

  20. Control of Electron Beam-Induced Au Nanocrystal Growth Kinetics through Solution Chemistry.

    PubMed

    Park, Jeung Hun; Schneider, Nicholas M; Grogan, Joseph M; Reuter, Mark C; Bau, Haim H; Kodambaka, Suneel; Ross, Frances M

    2015-08-12

    Measurements of solution-phase crystal growth provide mechanistic information that is helpful in designing and synthesizing nanostructures. Here, we examine the model system of individual Au nanocrystal formation within a defined liquid geometry during electron beam irradiation of gold chloride solution, where radiolytically formed hydrated electrons reduce Au ions to solid Au. By selecting conditions that favor the growth of well-faceted Au nanoprisms, we measure growth rates of individual crystals. The volume of each crystal increases linearly with irradiation time at a rate unaffected by its shape or proximity to neighboring crystals, implying a growth process that is controlled by the arrival of atoms from solution. Furthermore, growth requires a threshold dose rate, suggesting competition between reduction and oxidation processes in the solution. Above this threshold, the growth rate follows a power law with dose rate. To explain the observed dose rate dependence, we demonstrate that a reaction-diffusion model is required that explicitly accounts for the species H(+) and Cl(-). The model highlights the necessity of considering all species present when interpreting kinetic data obtained from beam-induced processes, and suggest conditions under which growth rates can be controlled with higher precision. PMID:26207841

  1. Antifreeze effect of carboxylated ε-poly-L-lysine on the growth kinetics of ice crystals.

    PubMed

    Vorontsov, Dmitry A; Sazaki, Gen; Hyon, Suong-Hyu; Matsumura, Kazuaki; Furukawa, Yoshinori

    2014-08-28

    Some biological substances control the nucleation and growth of inorganic crystals. Antifreeze proteins, which prohibit ice crystal growth in living organisms, promise are also important as biological antifreezes for medical applications and in the frozen food industries. In this work, we investigated the crystallization of ice in the presence of a new cryoprotector, carboxylated ε-poly-L-lysine (COOH-PLL). In order to reveal the characteristics and the mechanism of its antifreeze effect, free-growth experiments of ice crystals were carried out in solutions with various COOH-PLL concentrations and degrees of supercooling, and the depression of the freezing point and growth rates of the tips of ice dendrites were obtained using optical microscopy. Hysteresis of growth rates and depression of the freezing point was revealed in the presence of COOH-PLL. The growth-inhibition effect of COOH-PLL molecules could be explained on the basis of the Gibbs-Thomson law and the use of Langmuir's adsorption isotherm. Theoretical kinetic curves for hysteresis calculated on the basis of Punin-Artamonova's model were in good agreement with experimental data. We conclude that adsorption of large biological molecules in the case of ice crystallization has a non-steady-state character and occurs more slowly than the process of embedding of crystal growth units. PMID:25113284

  2. Growth Kinetics and Transmission Potential of Existing and Emerging Field Strains of Infectious Laryngotracheitis Virus

    PubMed Central

    Coppo, Mauricio J. C.; Vaz, Paola K.; Legione, Alistair R.; Quinteros, José A.; Noormohammadi, Amir H.; Markham, Phillip F.; Browning, Glenn F.; Devlin, Joanne M.

    2015-01-01

    Attenuated live infectious laryngotracheitis virus (ILTV) vaccines are widely used in the poultry industry to control outbreaks of disease. Natural recombination between commercial ILTV vaccines has resulted in virulent recombinant viruses that cause severe disease, and that have now emerged as the dominant field strains in important poultry producing regions in Australia. Genotype analysis using PCR—restriction fragment length polymorphism has shown one recombinant virus (class 9) has largely replaced the previously dominant class 2 field strain. To examine potential reasons for this displacement we compared the growth kinetics and transmission potential of class 2 and class 9 viruses. The class 9 ILTV grew to higher titres in cell culture and embryonated eggs, but no differences were observed in entry kinetics or egress into the allantoic fluid from the chorioallantoic membrane. In vivo studies showed that birds inoculated with class 9 ILTV had more severe tracheal pathology and greater weight loss than those inoculated with the class 2 virus. Consistent with the predominance of class 9 field strains, birds inoculated with 102 or 103 plaque forming units of class 9 ILTV consistently transmitted virus to in-contact birds, whereas this could only be seen in birds inoculated with 104 PFU of the class 2 virus. Taken together, the improved growth kinetics and transmission potential of the class 9 virus is consistent with improved fitness of the recombinant virus over the previously dominant field strain. PMID:25785629

  3. Growth kinetics and transmission potential of existing and emerging field strains of infectious laryngotracheitis virus.

    PubMed

    Lee, Sang-Won; Hartley, Carol A; Coppo, Mauricio J C; Vaz, Paola K; Legione, Alistair R; Quinteros, José A; Noormohammadi, Amir H; Markham, Phillip F; Browning, Glenn F; Devlin, Joanne M

    2015-01-01

    Attenuated live infectious laryngotracheitis virus (ILTV) vaccines are widely used in the poultry industry to control outbreaks of disease. Natural recombination between commercial ILTV vaccines has resulted in virulent recombinant viruses that cause severe disease, and that have now emerged as the dominant field strains in important poultry producing regions in Australia. Genotype analysis using PCR-restriction fragment length polymorphism has shown one recombinant virus (class 9) has largely replaced the previously dominant class 2 field strain. To examine potential reasons for this displacement we compared the growth kinetics and transmission potential of class 2 and class 9 viruses. The class 9 ILTV grew to higher titres in cell culture and embryonated eggs, but no differences were observed in entry kinetics or egress into the allantoic fluid from the chorioallantoic membrane. In vivo studies showed that birds inoculated with class 9 ILTV had more severe tracheal pathology and greater weight loss than those inoculated with the class 2 virus. Consistent with the predominance of class 9 field strains, birds inoculated with 10(2) or 10(3) plaque forming units of class 9 ILTV consistently transmitted virus to in-contact birds, whereas this could only be seen in birds inoculated with 10(4) PFU of the class 2 virus. Taken together, the improved growth kinetics and transmission potential of the class 9 virus is consistent with improved fitness of the recombinant virus over the previously dominant field strain. PMID:25785629

  4. Kinetics of substrate utilization and bacterial growth of crude oil degraded by Pseudomonas aeruginosa.

    PubMed

    Talaiekhozani, Amirreza; Jafarzadeh, Nematollah; Fulazzaky, Mohamad Ali; Talaie, Mohammad Reza; Beheshti, Masoud

    2015-01-01

    Pollution associated with crude oil (CO) extraction degrades the quality of waters, threatens drinking water sources and may ham air quality. The systems biology approach aims at learning the kinetics of substrate utilization and bacterial growth for a biological process for which very limited knowledge is available. This study uses the Pseudomonas aeruginosa to degrade CO and determines the kinetic parameters of substrate utilization and bacterial growth modeled from a completely mixed batch reactor. The ability of Pseudomonas aeruginosa can remove 91 % of the total petroleum hydrocarbons and 83 % of the aromatic compounds from oily environment. The value k of 9.31 g of substrate g(-1) of microorganism d(-1) could be far higher than the value k obtained for petrochemical wastewater treatment and that for municipal wastewater treatment. The production of new cells of using CO as the sole carbon and energy source can exceed 2(3) of the existing cells per day. The kinetic parameters are verified to contribute to improving the biological removal of CO from oily environment. PMID:26413306

  5. A Kinetic and Factorial Approach to Study the Effects of Temperature and Salinity on Growth and Toxin Production by the Dinoflagellate Alexandrium ostenfeldii from the Baltic Sea

    PubMed Central

    Salgado, Pablo; Vázquez, José A.; Riobó, Pilar; Franco, José M.; Figueroa, Rosa I.; Kremp, Anke; Bravo, Isabel

    2015-01-01

    Alexandrium ostenfeldii is present in a wide variety of environments in coastal areas worldwide and is the only dinoflagellate known species that produces paralytic shellfish poisoning (PSP) toxins and two types of cyclic imines, spirolides (SPXs) and gymnodimines (GYMs). The increasing frequency of A. ostenfeldii blooms in the Baltic Sea has been attributed to the warming water in this region. To learn more about the optimal environmental conditions favoring the proliferation of A. ostenfeldii and its complex toxicity, the effects of temperature and salinity on the kinetics of both the growth and the net toxin production of this species were examined using a factorial design and a response-surface analysis (RSA). The results showed that the growth of Baltic A. ostenfeldii occurs over a wide range of temperatures and salinities (12.5–25.5°C and 5–21, respectively), with optimal growth conditions achieved at a temperature of 25.5°C and a salinity of 11.2. Together with the finding that a salinity > 21 was the only growth-limiting factor detected for this strain, this study provides important insights into the autecology and population distribution of this species in the Baltic Sea. The presence of PSP toxins, including gonyautoxin (GTX)-3, GTX-2, and saxitoxin (STX), and GYMs (GYM-A and GYM-B/-C analogues) was detected under all temperature and salinity conditions tested and in the majority of the cases was concomitant with both the exponential growth and stationary phases of the dinoflagellate’s growth cycle. Toxin concentrations were maximal at temperatures and salinities of 20.9°C and 17 for the GYM-A analogue and > 19°C and 15 for PSP toxins, respectively. The ecological implications of the optimal conditions for growth and toxin production of A. ostenfeldii in the Baltic Sea are discussed. PMID:26636674

  6. Growth of Ni2Si by rapid thermal annealing: Kinetics and moving species

    NASA Astrophysics Data System (ADS)

    Ma, E.; Lim, B. S.; Nicolet, M.-A.; Natan, M.

    1987-10-01

    The growth kinetics is characterized and the moving species is identified for the formation of Ni2Si by Rapid Thermal Annealing (RTA) of sequentially deposited Si and Ni films on a <100> Si substrate. The interfacial Ni2Si layer grows as the square root of time, indicating that the suicide growth process is diffusion-limited. The activation energy is 1.25±0.2 eV in the RTA temperature range of 350 450° C. The results extend those of conventional steady-state furnace annealing quite fittingly, and a common activation energy of 1.3±0.2 eV is deduced from 225° to 450° C. The marker experiment shows that Ni is the dominant moving species during Ni2Si formation by RTA, as is the case for furnace annealing. It is concluded that the two annealing techniques induce the same growth mechanisms in Ni2Si formation.

  7. Impact of sustaining a controlled residual growth on polyhydroxybutyrate yield and production kinetics in Cupriavidus necator.

    PubMed

    Grousseau, Estelle; Blanchet, Elise; Déléris, Stéphane; Albuquerque, Maria G E; Paul, Etienne; Uribelarrea, Jean-Louis

    2013-11-01

    In this study a complementary modeling and experimental approach was used to explore how growth controls the NADPH generation and availability, and the resulting impact on PHB (polyhydroxybutyrate) yields and kinetics. The results show that the anabolic demand allowed the NADPH production through the Entner-Doudoroff (ED) pathway, leading to a high maximal theoretical PHB production yield of 0.89 C mole C mole(-1); whereas without biomass production, NADPH regeneration is only possible via the isocitrate dehydrogenase leading to a theoretical yield of 0.67 C mole C mole(-1). Furthermore, the maximum specific rate of NADPH produced at maximal growth rate (to fulfil biomass requirement) was found to be the maximum set in every conditions, which by consequence determines the maximal PHB production rate. These results imply that sustaining a controlled residual growth improves the PHB specific production rate without altering production yield. PMID:24035890

  8. Kinetic Analysis of Spontaneous Whisker Growth on Pre-treated Surfaces with Weak Oxide

    NASA Astrophysics Data System (ADS)

    Su, Chien-Hao; Chen, Hao; Lee, Hsin-Yi; Liu, Cheng Yi; Ku, Ching-Shun; Wu, Albert T.

    2014-09-01

    This study sought to clarify the relationship between cracks in surface oxide layers and the growth behavior of tin whiskers. The number, length, and total volume of extrusions were precisely calculated and residual stress was measured using synchrotron radiation x-ray diffractometry. The aim was to elucidate the influence of stress on the driving force and flux involved in atomic diffusion. The distance between weak spots was shown to be the most significant factor involved in the growth of whiskers. The results could explain why increasing the density of the surface weak spots could reduce the number of long whiskers. Measuring the dimensions of whiskers yielded a precise kinetic model capable of describing the migration of atoms to the root of whiskers, resulting in their spontaneous growth.

  9. Kinetics of crystal nucleation and growth in Pd(40)Ni(40)P(20) glass

    NASA Technical Reports Server (NTRS)

    Drehman, A. J.; Greer, A. L.

    1984-01-01

    Samples of Pd(40)Ni(40)P(20) glass, produced by cooling the melt at 1 or 800 K/s, are heated in a differential scanning calorimeter to determine the crystallization kinetics. Optical microscopy shows that eutectic crystallization proceeds both by growth from the surface of the samples and by the growth of spherical regions around preexisting nuclei in the interior. A modified Kissinger (1957) analysis is used to obtain the activation energy for crystal growth (3.49 eV). The steady state homogeneous nucleation frequency at 590 K is about 10 million/cu m per sec. This is estimated to be the maximum nucleation frequency: it is too low to account for the observed population of quenched-in nuclei, which are therefore presumed to be heterogeneous. The major practical obstacle to glass formation in this system is heterogeneous nucleation.

  10. Effects of substrate crystallinity and dopant on the growth kinetics of platinum silicides

    NASA Astrophysics Data System (ADS)

    Takai, H.; Psaras, P. A.; Tu, K. N.

    1985-12-01

    The growth kinetics of platinum silicides have been studied on four substrate categories: single-crystal, amorphous, undoped polycrystalline, and phosphorus-doped (8×1020 at./cm3) polycrystalline silicon. The sequential growth of Pt2Si and PtSi were analyzed by Rutherford backscattering spectroscopy (RBS), Seeman-Bohlin x-ray diffraction, and cross-section transmission electron microscopy. Phosphorus depth profiles were measured by secondary ion mass spectroscopy (SIMS). Our results conclude that the activation energies for the growth of Pt2Si and PtSi are not affected by substrate crystallinity and doping of phosphorus. Analysis of the phosphorus profile by SIMS clearly showed that phosphorus atoms are segregated near the interface between PtSi and polycrystalline silicon, but not at the Pt2Si/polycrystalline silicon interface.