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Sample records for fish populations prior

  1. Importance of benthic production to fish populations in Lake Mead prior to the establishment of quagga mussels

    USGS Publications Warehouse

    Umek, John; Chandra, Sudeep; Rosen, Michael; Wittmann, Marion; Sullivan, Joe; Orsak, Erik

    2010-01-01

    Limnologists recently have developed an interest in quantifying benthic resource contributions to higher-level consumers. Much of this research focuses on natural lakes with very little research in reservoirs. In this study, we provide a contemporary snapshot of the food web structure of Lake Mead to evaluate the contribution of benthic resources to fish consumers. In addition, we document the available food to fishes on soft sediments and changes to the invertebrate community over 2 time periods. Benthic invertebrate food availability for fishes is greater in Las Vegas Bay than Overton Arm. Las Vegas Bay is dominated by oligochaetes, whose biomass increased with depth, while Overton Arm is dominated by chironomids, whose biomass did not change with depth. Diet and isotopic measurements indicate the fish community largely relies on benthic resources regardless of basin (Las Vegas Bay >80%; Overton Arm >92%); however, the threadfin shad likely contribute more to largemouth and striped bass production in Overton Arm versus Las Vegas Bay. A 2-time period analysis, pre and post quagga mussel establishment and during lake level declines, suggests there is no change in the density of benthic invertebrates in Boulder Basin, but there were greater abundances of select taxa in this basin by season and depth than in other basins. Given the potential of alterations as a result of the expansion of quagga mussel and the reliance of the fishery on benthic resources, future investigation of basin specific, benthic processes is recommended.

  2. Detection of dwarf gourami iridovirus (Infectious spleen and kidney necrosis virus) in populations of ornamental fish prior to and after importation into Australia, with the first evidence of infection in domestically farmed Platy (Xiphophorus maculatus).

    PubMed

    Rimmer, Anneke E; Becker, Joy A; Tweedie, Alison; Lintermans, Mark; Landos, Matthew; Stephens, Fran; Whittington, Richard J

    2015-11-01

    The movement of ornamental fish through international trade is a major factor for the transboundary spread of pathogens. In Australia, ornamental fish which may carry dwarf gourami iridovirus (DGIV), a strain of Infectious spleen and kidney necrosis virus (ISKNV), have been identified as a biosecurity risk despite relatively stringent import quarantine measures being applied. In order to gain knowledge of the potential for DGIV to enter Australia, imported ornamental fish were sampled prior to entering quarantine, during quarantine, and post quarantine from wholesalers and aquatic retail outlets in Australia. Samples were tested by quantitative polymerase chain reaction (qPCR) for the presence of megalocytivirus. Farmed and wild ornamental fish were also tested. Megalocytivirus was detected in ten of fourteen species or varieties of ornamental fish. Out of the 2086 imported gourami tested prior to entering quarantine, megalocytivirus was detected in 18.7% of fish and out of the 51 moribund/dead ornamental fish tested during the quarantine period, 68.6% were positive for megalocytivirus. Of fish from Australian wholesalers and aquatic retail outlets 14.5% and 21.9%, respectively, were positive. Out of 365 farmed ornamental fish, ISKNV-like megalocytivirus was detected in 1.1%; these were Platy (Xiphophorus maculatus). Megalocytivirus was not detected in free-living breeding populations of Blue gourami (Trichopodus trichopterus) caught in Queensland. This study showed that imported ornamental fish are vectors for DGIV and it was used to support an import risk analysis completed by the Australian Department of Agriculture. Subsequently, the national biosecurity policy was revised and from 1 March 2016, a health certification is required for susceptible families of fish to be free of this virus prior to importation. PMID:26452601

  3. Fishing amplifies forage fish population collapses

    PubMed Central

    Essington, Timothy E.; Moriarty, Pamela E.; Froehlich, Halley E.; Hodgson, Emma E.; Koehn, Laura E.; Oken, Kiva L.; Siple, Margaret C.; Stawitz, Christine C.

    2015-01-01

    Forage fish support the largest fisheries in the world but also play key roles in marine food webs by transferring energy from plankton to upper trophic-level predators, such as large fish, seabirds, and marine mammals. Fishing can, thereby, have far reaching consequences on marine food webs unless safeguards are in place to avoid depleting forage fish to dangerously low levels, where dependent predators are most vulnerable. However, disentangling the contributions of fishing vs. natural processes on population dynamics has been difficult because of the sensitivity of these stocks to environmental conditions. Here, we overcome this difficulty by collating population time series for forage fish populations that account for nearly two-thirds of global catch of forage fish to identify the fingerprint of fisheries on their population dynamics. Forage fish population collapses shared a set of common and unique characteristics: high fishing pressure for several years before collapse, a sharp drop in natural population productivity, and a lagged response to reduce fishing pressure. Lagged response to natural productivity declines can sharply amplify the magnitude of naturally occurring population fluctuations. Finally, we show that the magnitude and frequency of collapses are greater than expected from natural productivity characteristics and therefore, likely attributed to fishing. The durations of collapses, however, were not different from those expected based on natural productivity shifts. A risk-based management scheme that reduces fishing when populations become scarce would protect forage fish and their predators from collapse with little effect on long-term average catches. PMID:25848018

  4. Fishing amplifies forage fish population collapses.

    PubMed

    Essington, Timothy E; Moriarty, Pamela E; Froehlich, Halley E; Hodgson, Emma E; Koehn, Laura E; Oken, Kiva L; Siple, Margaret C; Stawitz, Christine C

    2015-05-26

    Forage fish support the largest fisheries in the world but also play key roles in marine food webs by transferring energy from plankton to upper trophic-level predators, such as large fish, seabirds, and marine mammals. Fishing can, thereby, have far reaching consequences on marine food webs unless safeguards are in place to avoid depleting forage fish to dangerously low levels, where dependent predators are most vulnerable. However, disentangling the contributions of fishing vs. natural processes on population dynamics has been difficult because of the sensitivity of these stocks to environmental conditions. Here, we overcome this difficulty by collating population time series for forage fish populations that account for nearly two-thirds of global catch of forage fish to identify the fingerprint of fisheries on their population dynamics. Forage fish population collapses shared a set of common and unique characteristics: high fishing pressure for several years before collapse, a sharp drop in natural population productivity, and a lagged response to reduce fishing pressure. Lagged response to natural productivity declines can sharply amplify the magnitude of naturally occurring population fluctuations. Finally, we show that the magnitude and frequency of collapses are greater than expected from natural productivity characteristics and therefore, likely attributed to fishing. The durations of collapses, however, were not different from those expected based on natural productivity shifts. A risk-based management scheme that reduces fishing when populations become scarce would protect forage fish and their predators from collapse with little effect on long-term average catches. PMID:25848018

  5. Fish population and habitat analysis in Buck Creek, Washington, prior to recolonization by anadromous salmonids after the removal of Condit Dam

    USGS Publications Warehouse

    Allen, M. Brady; Burkhardt, Jeanette; Munz, Carrie; Connolly, Patrick J.

    2012-01-01

    We assessed the physical and biotic conditions in the part of Buck Creek, Washington, potentially accessible to anadromous fishes. This creek is a major tributary to the White Salmon River upstream of Condit Dam, which was breached in October 2011. Habitat and fish populations were characterized in four stream reaches. Reach breaks were based on stream gradient, water withdrawals, and fish barriers. Buck Creek generally was confined, with a single straight channel and low sinuosity. Boulders and cobble were the dominant stream substrate, with limited gravel available for spawning. Large-cobble riffles were 83 percent of the available fish habitat. Pools, comprising 15 percent of the surface area, mostly were formed by bedrock with little instream cover and low complexity. Instream wood averaged 6—10 pieces per 100 meters, 80 percent of which was less than 50 centimeters in diameter. Water temperature in Buck Creek rarely exceeded 16 degrees Celsius and did so for only 1 day at river kilometer (rkm) 3 and 11 days at rkm 0.2 in late July and early August 2009. The maximum temperature recorded was 17.2 degrees Celsius at rkm 0.2 on August 2, 2009. Minimum summer discharge in Buck Creek was 3.3 cubic feet per second downstream of an irrigation diversion (rkm 3.1) and 7.7 cubic feet per second at its confluence with the White Salmon River. Rainbow trout (Oncorhynchus mykiss) was the dominant fish species in all reaches. The abundance of age-1 or older rainbow trout was similar between reaches. However, in 2009 and 2010, the greatest abundance of age-0 rainbow trout (8 fish per meter) was in the most downstream reach. These analyses in Buck Creek are important for understanding the factors that may limit fish abundance and productivity, and they will help identify and prioritize potential restoration actions. The data collected constitute baseline information of pre-dam removal conditions that will allow assessment of changes in fish populations now that Condit Dam has

  6. Fish populations in Plynlimon streams

    NASA Astrophysics Data System (ADS)

    Crisp, D. T.; Beaumont, W. R. C.

    In Plynlimon streams, brown trout (Salmo trutta L.) are widespread in the upper Wye at population densities of 0.03 to 0.32 fish m-2 and show evidence of successful recruitment in most years. In the upper Severn, brown trout are found only in an area of c. 1670 -2 downstream of Blaenhafren Falls at densities of 0.03 to 0.24 fish -2 and the evidence suggests very variable year to year success in recruitment (Crisp & Beaumont, 1996). Analyses of the data show that temperature differences between afforested and unafforested streams may affect the rates of trout incubation and growth but are not likely to influence species survival. Simple analyses of stream discharge data suggest, but do not prove, that good years for recruitment in the Hafren population were years of low stream discharge. This may be linked to groundwater inputs detected in other studies in this stream. More research is needed to explain the survival of the apparently isolated trout population in the Hafren.

  7. Impact of entrainment and impingement on fish populations in the Hudson River estuary. Volume III. An analysis of the validity of the utilities' stock-recruitment curve-fitting exercise and prior estimation of beta technique. Environmental Sciences Division publication No. 1792

    SciTech Connect

    Christensen, S. W.; Goodyear, C. P.; Kirk, B. L.

    1982-03-01

    This report addresses the validity of the utilities' use of the Ricker stock-recruitment model to extrapolate the combined entrainment-impingement losses of young fish to reductions in the equilibrium population size of adult fish. In our testimony, a methodology was developed and applied to address a single fundamental question: if the Ricker model really did apply to the Hudson River striped bass population, could the utilities' estimates, based on curve-fitting, of the parameter alpha (which controls the impact) be considered reliable. In addition, an analysis is included of the efficacy of an alternative means of estimating alpha, termed the technique of prior estimation of beta (used by the utilities in a report prepared for regulatory hearings on the Cornwall Pumped Storage Project). This validation methodology should also be useful in evaluating inferences drawn in the literature from fits of stock-recruitment models to data obtained from other fish stocks.

  8. ENVIRONMENTAL EFFECTS OF OIL SHALE MINING AND PROCESSING. PART I. FISHES OF PICEANCE CREEK, COLORADO, PRIOR TO OIL SHALE PROCESSING

    EPA Science Inventory

    The fish populations of Piceance Creek, Colorado, were surveyed to establish preoperational conditions prior to extensive oil shale processing in the region. Data collected in this study have been compared to data reported by earlier researchers. The mountain sucker (Catostomus p...

  9. POPULATION DECLINE IN STREAM FISH

    EPA Science Inventory

    Over half of the streams in the Mid-Atlantic Highlands have fish communities that are in fair or poor condition, and the EPA concluded that physical habitat alteration represents the greatest potential stressor across this region. A quantitative method for relating habitat quali...

  10. Predicting neonatal pharmacokinetics from prior data using population pharmacokinetic modeling.

    PubMed

    Wang, Jian; Edginton, Andrea N; Avant, Debbie; Burckart, Gilbert J

    2015-10-01

    Selection of the first dose for neonates in clinical trials is very challenging. The objective of this analysis was to assess if a population pharmacokinetic (PK) model developed with data from infants to adults is predictive of neonatal clearance and to evaluate what age range of prior PK data is needed for informative modeling to predict neonate exposure. Two sources of pharmacokinetic data from 8 drugs were used to develop population models: (1) data from all patients > 2 years of age, and (2) data from all nonneonatal patients aged > 28 days. The prediction error based on the models using data from subjects > 2 years of age showed bias toward overprediction, with median average fold error (AFE) for CL predicted/CLobserved greater than 1.5. The bias for predicting neonatal PK was improved when using all prior PK data including infants as opposed to an assessment without infant PK data, with the median AFE 0.91. As an increased number of pediatric trials are conducted in neonates under the Food and Drug Administration Safety and Innovation Act, dose selection should be based on the best estimates of neonatal pharmacokinetics and pharmacodynamics prior to conducting efficacy and safety studies in neonates. PMID:25907280

  11. Population Viability Analysis of Riverine Fishes

    SciTech Connect

    Bates, P.; Chandler, J.; Jager, H.I.; Lepla, K.; Van Winkle, W.

    1999-04-12

    Many utilities face conflkts between two goals: cost-efficient hydropower generation and protecting riverine fishes. Research to develop ecological simulation tools that can evaluate alternative mitigation strategies in terms of their benefits to fish populations is vital to informed decision-making. In this paper, we describe our approach to population viability analysis of riverine fishes in general and Snake River white sturgeon in particular. We are finding that the individual-based modeling approach used in previous in-stream flow applications is well suited to addressing questions about the viability of species of concern for several reasons. Chief among these are: (1) the abiIity to represent the effects of individual variation in life history characteristics on predicted population viabili~, (2) the flexibili~ needed to quanti~ the ecological benefits of alternative flow management options by representing spatial and temporal variation in flow and temperaturty and (3) the flexibility needed to quantifi the ecological benefits of non-flow related manipulations (i.e., passage, screening and hatchery supplementation).

  12. Fish population persistence in hydrologically variable landscapes.

    PubMed

    Bond, Nick R; Balcombe, Stephen R; Crook, David A; Marshall, Jonathan C; Menke, Norbert; Lobegeiger, Jaye S

    2015-06-01

    Forecasting population persistence in environments subjected to periodic disturbances represents a general challenge for ecologists. In arid and semiarid regions, climate change and human water use pose significant threats to the future persistence of aquatic biota whose populations typically depend on permanent refuge waterholes for their viability. As such, habitats are increasingly being lost as a result of decreasing runoff and increasing water extraction. We constructed a spatially explicit population model for golden perch Macquaria ambigua (Richardson), a native freshwater fish in the Murray-Darling Basin in eastern Australia. We then used the model to examine the effects of increased aridity, increased drought frequency, and localized human water extraction on population viability. Consistent with current observations, the model predicted golden perch population persistence under the current climate and levels of water use. Modeled increases in local water extraction greatly increased the risk of population decline, while scenarios of increasing aridity and drought frequency were associated with only minor increases in this risk. We conclude that natural variability in abundances and high turnover rates (extinction/recolonization) of local populations dictate the importance of spatial connectivity and periodic cycles of population growth. Our study also demonstrates an effective way to examine population persistence in intermittent and ephemeral river systems by integrating spatial and temporal dynamics of waterhole persistence with demographic processes (survival, recruitment, and dispersal) within a stochastic modeling framework. The approach can be used to help understand the impacts of natural and anthropogenic drivers, including water resource development, on the viability of biota inhabiting highly dynamic environments. PMID:26465032

  13. Methodological issues affecting the study of fish parasites. I. Duration of live fish storage prior to dissection.

    PubMed

    Kvach, Yuriy; Ondračková, Markéta; Janáč, Michal; Jurajda, Pavel

    2016-05-01

    We tested the ability of parasite species to respond quickly to artificial conditions (e.g. by changing abundance or even decreasing to extinction) while host fish species were being held alive prior to dissection. Prussian carp Carassius gibelio were sampled by electrofishing from 2 ponds alongside the River Dyje (Czech Republic) during 'cold' and 'warm' seasons. All fish were transported to the laboratory in aerated pond water and kept in a 1 m3 outdoor basin with aged tap water for 6 d. Twenty fish were dissected on consecutive days (total 120 fish for each site). Our results indicated that there was little change in parasite loading over the first 3 d of holding, suggesting no impact on parasitological studies undertaken over this period. From the fourth day, however, overall parasite abundance increased due to rapid reproduction of some parasite species, especially gyrodactylids in the cold season and dactylogyrids in the warm season. Parasite diversity appeared less stable in the warm season, with significant differences being registered as early as the second day. In addition to holding period, environmental conditions during fish holding will also play an important role in parasite community shifts. PMID:27137069

  14. 18 CFR 4.301 - Notice to fish and wildlife agencies and estimation of fees prior to filing.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 18 Conservation of Power and Water Resources 1 2011-04-01 2011-04-01 false Notice to fish and... the Act § 4.301 Notice to fish and wildlife agencies and estimation of fees prior to filing. (a... each fish and wildlife agency consulted in writing with a copy to the Commission whether it will...

  15. 18 CFR 4.301 - Notice to fish and wildlife agencies and estimation of fees prior to filing.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 18 Conservation of Power and Water Resources 1 2010-04-01 2010-04-01 false Notice to fish and... the Act § 4.301 Notice to fish and wildlife agencies and estimation of fees prior to filing. (a... each fish and wildlife agency consulted in writing with a copy to the Commission whether it will...

  16. 18 CFR 4.301 - Notice to fish and wildlife agencies and estimation of fees prior to filing.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 18 Conservation of Power and Water Resources 1 2014-04-01 2014-04-01 false Notice to fish and... the Act § 4.301 Notice to fish and wildlife agencies and estimation of fees prior to filing. (a... each fish and wildlife agency consulted in writing with a copy to the Commission whether it will...

  17. 18 CFR 4.301 - Notice to fish and wildlife agencies and estimation of fees prior to filing.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 18 Conservation of Power and Water Resources 1 2013-04-01 2013-04-01 false Notice to fish and... the Act § 4.301 Notice to fish and wildlife agencies and estimation of fees prior to filing. (a... each fish and wildlife agency consulted in writing with a copy to the Commission whether it will...

  18. 18 CFR 4.301 - Notice to fish and wildlife agencies and estimation of fees prior to filing.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 18 Conservation of Power and Water Resources 1 2012-04-01 2012-04-01 false Notice to fish and... the Act § 4.301 Notice to fish and wildlife agencies and estimation of fees prior to filing. (a... each fish and wildlife agency consulted in writing with a copy to the Commission whether it will...

  19. Short winters threaten temperate fish populations

    PubMed Central

    Farmer, Troy M.; Marschall, Elizabeth A.; Dabrowski, Konrad; Ludsin, Stuart A.

    2015-01-01

    Although climate warming is expected to benefit temperate ectotherms by lengthening the summer growing season, declines in reproductive success following short, warm winters may counter such positive effects. Here we present long-term (1973–2010) field patterns for Lake Erie yellow perch, Perca flavescens, which show that failed annual recruitment events followed short, warm winters. Subsequent laboratory experimentation and field investigations revealed how reduced reproductive success following short, warm winters underlie these observed field patterns. Following short winters, females spawn at warmer temperatures and produce smaller eggs that both hatch at lower rates and produce smaller larvae than females exposed to long winters. Our research suggests that continued climate warming can lead to unanticipated, negative effects on temperate fish populations. PMID:26173734

  20. Short winters threaten temperate fish populations

    NASA Astrophysics Data System (ADS)

    Farmer, Troy M.; Marschall, Elizabeth A.; Dabrowski, Konrad; Ludsin, Stuart A.

    2015-07-01

    Although climate warming is expected to benefit temperate ectotherms by lengthening the summer growing season, declines in reproductive success following short, warm winters may counter such positive effects. Here we present long-term (1973-2010) field patterns for Lake Erie yellow perch, Perca flavescens, which show that failed annual recruitment events followed short, warm winters. Subsequent laboratory experimentation and field investigations revealed how reduced reproductive success following short, warm winters underlie these observed field patterns. Following short winters, females spawn at warmer temperatures and produce smaller eggs that both hatch at lower rates and produce smaller larvae than females exposed to long winters. Our research suggests that continued climate warming can lead to unanticipated, negative effects on temperate fish populations.

  1. Archaeological evidence of validity of fish populations on unexploited reefs as proxy targets for modern populations.

    PubMed

    Longenecker, Ken; Chan, Yvonne L; Toonen, Robert J; Carlon, David B; Hunt, Terry L; Friedlander, Alan M; Demartini, Edward E

    2014-10-01

    Reef-fish management and conservation is hindered by a lack of information on fish populations prior to large-scale contemporary human impacts. As a result, relatively pristine sites are often used as conservation baselines for populations near sites affected by humans. This space-for-time approach can only be validated by sampling assemblages through time. We used archaeological remains to evaluate whether the remote, uninhabited Northwestern Hawaiian Islands (NWHI) might provide a reasonable proxy for a lightly exploited baseline in the Main Hawaiian Islands (MHI). We used molecular and morphological techniques to describe the taxonomic and size composition of the scarine parrotfish catches present in 2 archaeological assemblages from the MHI, compared metrics of these catches with modern estimates of reproductive parameters to evaluate whether catches represented by the archaeological material were consistent with sustainable fishing, and evaluated overlap between size structures represented by the archaeological material and modern survey data from the MHI and the NWHI to assess whether a space-for-time substitution is reasonable. The parrotfish catches represented by archaeological remains were consistent with sustainable fishing because they were dominated by large, mature individuals whose average size remained stable from prehistoric (AD approximately 1400-1700) through historic (AD 1700-1960) periods. The ancient catches were unlike populations in the MHI today. Overlap between the size structure of ancient MHI catches and modern survey data from the NWHI or the MHI was an order of magnitude greater for the NWHI comparison, a result that supports the validity of using the NWHI parrotfish data as a proxy for the MHI before accelerated, heavy human impacts in modern times. PMID:24665960

  2. Reconstructing fish populations using Chaoborus (Diptera: Chaoboridae) remains a review

    NASA Astrophysics Data System (ADS)

    Sweetman, Jon N.; Smol, John P.

    2006-08-01

    Fish are an important component of many lakes, and a valuable resource in many countries, yet knowledge of how fish populations have fluctuated in the past is very limited. One potential source of information on fisheries dynamics is paleolimnology. This paper reviews the use of the sedimentary remains of the dipteran insect Chaoborus (commonly referred to as the phantom midge) in reconstructing past presence or absence of fish populations. We provide a brief overview of the ecology of Chaoborus larvae, and review the factors believed to be important in determining their distribution and abundance. In particular, we outline the important role fish have in structuring chaoborid assemblages. We highlight several recent studies utilizing Chaoborus remains in reconstructing past fish dynamics, including their use in determining the effects of acidification and piscicide additions on fish populations, and to tracing fish introductions into previously fishless lakes. We conclude by discussing the potential applications of other aquatic invertebrates, such as the Cladocera and Chironomidae, to infer changes in fish populations, and suggest that by integrating the information provided by these different proxies, we may further improve our ability to infer changes in past fish populations.

  3. Spatial structuring within a reservoir fish population: implications for management

    USGS Publications Warehouse

    Stewart, David R.; Long, James M.; Shoup, Daniel E.

    2014-01-01

    Spatial structuring in reservoir fish populations can exist because of environmental gradients, species-specific behaviour, or even localised fishing effort. The present study investigated whether white crappie exhibited evidence of improved population structure where the northern more productive half of a lake is closed to fishing to provide waterfowl hunting opportunities. Population response to angling was modelled for each substock of white crappie (north (protected) and south (unprotected) areas), the entire lake (single-stock model) and by combining simulations of the two independent substock models (additive model). White crappie in the protected area were more abundant, consisting of larger, older individuals, and exhibited a lower total annual mortality rate than in the unprotected area. Population modelling found that fishing mortality rates between 0.1 and 0.3 resulted in sustainable populations (spawning potential ratios (SPR) >0.30). The population in the unprotected area appeared to be more resilient (SPR > 0.30) at the higher fishing intensities (0.35–0.55). Considered additively, the whole-lake fishery appeared more resilient than when modelled as a single-panmictic stock. These results provided evidence of spatial structuring in reservoir fish populations, and we recommend model assessments used to guide management decisions should consider those spatial differences in other populations where they exist.

  4. Late Chachapoya population structure prior to Inka conquest.

    PubMed

    Nystrom, Kenneth C

    2006-11-01

    Archaeological and ethnohistorical documents suggest that the Chachapoya region was inhabited by a number of distinct sociopolitical groups that only united in the face of their common enemy, the Inka. The purpose of this research is to quantify the amount of internal genetic differentiation and levels of extraregional gene flow during the Late Chachapoya period, in order to obtain a better understanding of the genetic relationship between these presumed ethnic groups. Craniometric data were collected from three Late Chachapoya samples (Laguna Huayabamba, Kuelap, and Laguna de los Cóndores), in order to understand the genetic relationships between the groups and facilitate our understanding of Late Chachapoya population structure. Genetic differentiation among these series ranged from 0.047 (heritability = 1.0) to 0.090 (heritability = 0.55). The Relethford-Blangero residuals indicate that the Laguna Huayabamba and Laguna de los Cóndores populations were receiving greater than average external gene flow, while Kuelap was receiving less than average external gene flow. The correspondence between biological and archaeological data in the investigation of prehistoric ethnic identity is discussed. PMID:16617430

  5. Comparative Analysis of State Fish Consumption Advisories Targeting Sensitive Populations

    PubMed Central

    Scherer, Alison C.; Tsuchiya, Ami; Younglove, Lisa R.; Burbacher, Thomas M.; Faustman, Elaine M.

    2008-01-01

    Objective Fish consumption advisories are issued to warn the public of possible toxicological threats from consuming certain fish species. Although developing fetuses and children are particularly susceptible to toxicants in fish, fish also contain valuable nutrients. Hence, formulating advice for sensitive populations poses challenges. We conducted a comparative analysis of advisory Web sites issued by states to assess health messages that sensitive populations might access. Data sources We evaluated state advisories accessed via the National Listing of Fish Advisories issued by the U.S. Environmental Protection Agency. Data extraction We created criteria to evaluate advisory attributes such as risk and benefit message clarity. Data synthesis All 48 state advisories issued at the time of this analysis targeted children, 90% (43) targeted pregnant women, and 58% (28) targeted women of childbearing age. Only six advisories addressed single contaminants, while the remainder based advice on 2–12 contaminants. Results revealed that advisories associated a dozen contaminants with specific adverse health effects. Beneficial health effects of any kind were specifically associated only with omega-3 fatty acids found in fish. Conclusions These findings highlight the complexity of assessing and communicating information about multiple contaminant exposure from fish consumption. Communication regarding potential health benefits conferred by specific fish nutrients was minimal and focused primarily on omega-3 fatty acids. This overview suggests some lessons learned and highlights a lack of both clarity and consistency in providing the breadth of information that sensitive populations such as pregnant women need to make public health decisions about fish consumption during pregnancy. PMID:19079708

  6. Fish population losses from Adirondack Lakes: The role of surface water acidity and acidification

    NASA Astrophysics Data System (ADS)

    Baker, Joan P.; Warren-Hicks, William J.; Gallagher, James; Christensen, Sigurd W.

    1993-04-01

    Changes over time in the species composition of fish communities in Adirondack lakes were assessed to determine (1) the approximate numbers offish populations that have been lost and (2) the degree to which fish population losses may have resulted from surface water acidification and acidic deposition. Information on the present-day status offish communities was obtained by the Adirondack Lakes Survey Corporation, which surveyed 1469 Adirondack lakes in 1984-1987 (53% of the total ponded waters in the Adirondack ecological zone). Two hundred and ninety-five of these lakes had been surveyed in 1929-1934 during the first statewide biological survey; 720 had been surveyed in one or more years prior to 1970. Sixteen to 19% of the lakes with adequate historical data appeared to have lost one or more fish populations as a result of acidification. Brook trout and acid-sensitive minnow species had experienced the most widespread effects. Populations of brook trout and acid-sensitive minnows had been lost apparently as a result of acidification from 11% and 19%, respectively, of the lakes with confirmed historical occurrence of these taxa. By contrast, fish species that tend to occur primarily in lower elevation and larger lakes, such as largemouth and smallmouth bass and brown trout, have experienced little to no documented adverse effects. Lakes that were judged to have lost fish populations as a result of acidification had significantly lower; pH and, in most cases, also had higher estimated concentrations of inorganic aluminum and occurred at higher elevations than did lakes with the fish species still present. No other lake characteristics were consistently associated with fish population losses attributed to acidification. The exact numbers and proportions of fish populations affected could not be determined because of limitations on the quantity and quality of historical data. Lakes for which we had adequate historical data to assess long-term trends in fish

  7. Methylmercury in populations eating large quantities of marine fish

    SciTech Connect

    Turner, M.D.; Marsh, D.O.; Smith, J.C.; Inglis, J.B.; Clarkson, T.W.; Rubio, C.E.; Chiriboga, J.; Chiriboga, C.C.

    1980-11-01

    A Peruvian population was identified that was chronically exposed to methylmercury from the longterm consumption of ocean fish. The weekly fish intake averaged 10.1 kg per average family of 6.2 persons. Blood methylmercury concentrations ranged from 11 to 275 ng/ml, with a mean of 82 ng/ml. Paresthesias were reported by 29.5% of the population. In contrast, a nearby control population had a mean weekly fish consumption of 1.9 kg per average family of 6.4 persons. Their blood methylmercury levels were 3.3-25.1 ng/ml, with a mean of 9.9 ng/ml. Paresthesias were reported by 49.5% of this control group. No individual was identified with symptoms or signs that could be attributed to methylmercury intoxication.

  8. Modelling production per unit of food consumed in fish populations.

    PubMed

    Wiff, Rodrigo; Barrientos, Mauricio A; Milessi, Andrés C; Quiroz, J C; Harwood, John

    2015-01-21

    The ratio of production-to-consumption (ρ) reflects how efficiently a population can transform ingested food into biomass. Usually this ratio is estimated by separately integrating cohort per-recruit production and consumption per unit of biomass. Estimates of ρ from cohort analysis differ from those that consider the whole population, because fish populations are usually composed of cohorts that differ in their relative abundance. Cohort models for ρ also assume a stable age-structure and a constant population size (stationary condition). This may preclude their application to harvested populations, in which variations in fishing mortality and recruitment will affect age-structure. In this paper, we propose a different framework for estimating (ρ) in which production and consumption are modelled simultaneously to produce a population estimator of ρ. Food consumption is inferred from the physiological concepts underpinning the generalised von Bertalanffy growth function (VBGF). This general framework allows the effects of different age-structures to be explored, with a stationary population as a special case. Three models with different complexities, depending mostly on what assumptions are made about age-structure, are explored. The full data model requires knowledge about food assimilation efficiency, parameters of the VBGF and the relative proportion of individuals at age a at time y (Py(a)). A simpler model, which requires less data, is based on the stationary assumption. Model results are compared with estimates from cohort models for ρ using simulated fish populations of different lifespans. The models proposed here were also applied to three fish populations that are targets of commercial fisheries in the south-east Pacific. Uncertainty in the estimation of ρ was evaluated using a resampling approach. Simulation showed that cohort and population models produce different estimates for ρ and those differences depend on lifespan, fishing mortality and

  9. Predicting fish population response to instream flows

    SciTech Connect

    Studley, T.K.; Baldridge, J.E.; Railsback, S.F.

    1996-10-01

    A cooperative research program initiated by Pacific Gas and Electric is described. The goals of the project are to determine if trout populations respond to changes in base streamflows in a predictible manner, and to evaluate and improve the methods used to predict rainbow and brown trout population responses under altered flow regimes. Predictive methods based on computer models of the Physical Habitat Simulation System are described, and predictions generated for four diversions and creeks are tabulated. Baseline data indicates that instream flow assessments can be improved by using guild criteria in streams with competing species and including additional limiting factors (low recruitment, high winter flow, and high stream temperatures) in the analyses.

  10. Genetic improvement of wild fish populations.

    PubMed

    Moav, R; Brody, T; Hulata, G

    1978-09-22

    A plan for the genetic improvement of commercially exploited wild animals is presented. It consists of crossing wild with domesticated breeds to produce heterotic hybrids and to upgrade the wild stocks. Empirical evidence is presented from experiments with the carp. Procedures for monitoring the manipulated populations are outlined. The suggested plan is ecologically reasonable and would counteract the negative genetic changes caused by excessive commercial exploitation of many species. PMID:17830305

  11. Effects of fire on fish populations: Landscape perspectives on persistance of native fishes and nonnative fish invasions

    USGS Publications Warehouse

    Dunham, J.B.; Young, M.; Gresswell, Robert E.; Rieman, B.

    2003-01-01

    Our limited understanding of the short and long-term effects of fire on fish contributes to considerable uncertainty in assessments of the risks and benefits of fire management alternatives. A primary concern among the many potential effects of fire is the effects of fire and fire management on persistence of native fish populations. Limited evidence suggests vulnerability of fish to fire is contingent upon the quality of affected habitats, the amount and distribution of habitat (habitat fragmentation), and habitat specificity of the species in question. Species with narrow habitat requirements in highly degraded and fragmented systems are likely to be most vulnerable to fire and fire-related disturbance. In addition to effects of fire on native fish, there are growing concerns about the effects of fire on nonnative fish invasions. The role of fire in facilitating invasions by nonnative fishes is unknown, but experience with other species suggests some forms of disturbance associated with fire may facilitate invasion. Management efforts to promote persistence of fishes in fire-prone landscapes can take the form of four basic alternatives: (1) pre-fire management; (2) post-fire management; (3) managing fire itself (e.g. fire fighting); and (4) monitoring and adaptive management. Among these alternatives, pre-fire management is likely to be most effective. Effective pre-fire management activities will address factors that may render fish populations more vulnerable to the effects of fire (e.g. habitat degradation, fragmentation, and nonnative species). Post-fire management is also potentially important, but suffers from being a reactive approach that may not address threats in time to avert them. Managing fire itself can be important in some contexts, but negative consequences for fish populations are possible (e.g. toxicity of fire fighting chemicals to fish). Monitoring and adaptive management can provide important new information for evaluating alternatives, but

  12. Relationship of biomarkers to fish health and population

    SciTech Connect

    Schlenk, D.; Perkins, E.J.; Layher, W.G.; Zhang, Y.S.

    1995-12-31

    Although certain biomarkers are excellent indicators of exposure to specific chemicals, the biological meaning of these inducible proteins is unclear. This study correlated population metrics, an animal health index, and production of specific ``biomarker`` proteins. Collections of feral fish were made at 13 sites of an Arkansas Bayou. A Shannon Wiener Index was used to measure populations and a Fish Health Index (HAI) was constructed to assess the health of feral large mouth bass (Micropteris salmoides) collected at each site. Hepatic biochemical indicators included, CYP 1A, metallothionein, and HSP30. Large mouth bass (n = 9) were obtained from 7 of the 13 sites. Linear regression analysis revealed an direct relationship between CYPLA and fish health (r{sup 2} = 0.66). Although MT appeared to be inversely related to fish health, no significant correlation to fish health was observed (r{sup 2} = 0.09). However, a significant correlation was noted when compared to the Shannon Wiener Index (r{sup 2} = 0.752). Comparing FHI with Shannon-Wiener Index showed a significant correlation (r{sup 2} 0.21), indicating an inverse relationship. HSP30 expression was inversely related to health (r{sup 2} = 0.59), but no relationship was observed with Shannon Wiener. Consequently, these results show that certain markers are better indicators of animal health (HSP30) while others may be better at predicting population changes (MT). Moreover, other proteins used alone (CYP 1A) may provide confounding data about sites where fish are undergoing acute stress.

  13. Coral reef fish populations can persist without immigration.

    PubMed

    Salles, Océane C; Maynard, Jeffrey A; Joannides, Marc; Barbu, Corentin M; Saenz-Agudelo, Pablo; Almany, Glenn R; Berumen, Michael L; Thorrold, Simon R; Jones, Geoffrey P; Planes, Serge

    2015-11-22

    Determining the conditions under which populations may persist requires accurate estimates of demographic parameters, including immigration, local reproductive success, and mortality rates. In marine populations, empirical estimates of these parameters are rare, due at least in part to the pelagic dispersal stage common to most marine organisms. Here, we evaluate population persistence and turnover for a population of orange clownfish, Amphiprion percula, at Kimbe Island in Papua New Guinea. All fish in the population were sampled and genotyped on five occasions at 2-year intervals spanning eight years. The genetic data enabled estimates of reproductive success retained in the same population (reproductive success to self-recruitment), reproductive success exported to other subpopulations (reproductive success to local connectivity), and immigration and mortality rates of sub-adults and adults. Approximately 50% of the recruits were assigned to parents from the Kimbe Island population and this was stable through the sampling period. Stability in the proportion of local and immigrant settlers is likely due to: low annual mortality rates and stable egg production rates, and the short larval stages and sensory capacities of reef fish larvae. Biannual mortality rates ranged from 0.09 to 0.55 and varied significantly spatially. We used these data to parametrize a model that estimated the probability of the Kimbe Island population persisting in the absence of immigration. The Kimbe Island population was found to persist without significant immigration. Model results suggest the island population persists because the largest of the subpopulations are maintained due to having low mortality and high self-recruitment rates. Our results enable managers to appropriately target and scale actions to maximize persistence likelihood as disturbance frequencies increase. PMID:26582017

  14. Improving the assessment of instream flow needs for fish populations

    SciTech Connect

    Sale, M.J. ); Otto, R.G. and Associates, Arlington, VA )

    1991-01-01

    Instream flow requirements are one of the most frequent and most costly environmental issues that must be addressed in developing hydroelectric projects. Existing assessment methods for determining instream flow requirements have been criticized for not including all the biological response mechanisms that regulate fishery resources. A new project has been initiated to study the biological responses of fish populations to altered stream flows and to develop improved ways of managing instream flows. 21 refs., 3 figs.

  15. Evaluating and understanding fish health risks and their consequences in propagated and free-ranging fish populations

    USGS Publications Warehouse

    Moffitt, C.M.; Haukenes, A.H.; Williams, C.J.

    2005-01-01

    Fishery managers and resource conservationists are increasingly interested in understanding the fish health and disease risks of free-ranging fishes and whether propagated fishes or features and practices used at fish culture facilities pose a health risk to free-ranging populations. Disease agents are present in most both captive and all free-ranging fish populations, but the consequences and extent of infections in free-ranging populations are often difficult to measure, control, and understand. Sampling methods, protocols, and assay techniques developed to assess the health of captive populations are not as applicable for assessments of free-ranging fishes. The use of chemicals and therapeutics to control diseases and parasites in propagated fishes likely reduces the risk of introducing specific pathogens into the environment, but control measures may have localized effects on the environment surrounding fish culture facilities. To understand health risks of propagated and free ranging fishes, we must consider fish populations, culture facilities, fish releases, and their interactions within the greater geospatial features of the aquatic environment. ?? 2004 by the American Fisheries Society.

  16. Compensatory mechanisms in fish populations: Literature reviews: Volume 2, Compensation in fish populations subject to catastrophic impact: Final report

    SciTech Connect

    Jude, D.J.; Mansfield, P.J.; Schneeberger, P.J.; Wojcik, J.A.

    1987-05-01

    This study comprises an extensive literature review, critical evaluations of case histories, and considered recommendations for future research on the mechanisms and extent of compensation by various fish species subject to catastrophic impacts. ''Catastrophic impact'' was defined as an event which removes some limitation (such as food or space) on a fish population. Those events studied included new species introduction, toxic spills, exploitation of specific fish populations, and drawdown. The fish studied each had more than one compensatory mechanism available, and thus were able to respond to a catastrophic event even if an option was removed. Predation, overfishing, competition, disease, and parasitism are all potential catastrophies, but were found not to cause a catastrophic impact (except in special cases). In general, compensatory responses were determined to vary widely, even for species which perform fairly similar functions in an ecosystem. The extensive nature of this study, however, pointed up the many data gaps in the existing literature; recommendations are therefore made for followup research and expansion of ongoing monitoring programs, based on an evaluation of their relative importance.

  17. Energetic and ecological constraints on population density of reef fishes.

    PubMed

    Barneche, D R; Kulbicki, M; Floeter, S R; Friedlander, A M; Allen, A P

    2016-01-27

    Population ecology has classically focused on pairwise species interactions, hindering the description of general patterns and processes of population abundance at large spatial scales. Here we use the metabolic theory of ecology as a framework to formulate and test a model that yields predictions linking population density to the physiological constraints of body size and temperature on individual metabolism, and the ecological constraints of trophic structure and species richness on energy partitioning among species. Our model was tested by applying Bayesian quantile regression to a comprehensive reef-fish community database, from which we extracted density data for 5609 populations spread across 49 sites around the world. Our results indicate that population density declines markedly with increases in community species richness and that, after accounting for richness, energetic constraints are manifested most strongly for the most abundant species, which generally are of small body size and occupy lower trophic groups. Overall, our findings suggest that, at the global scale, factors associated with community species richness are the major drivers of variation in population density. Given that populations of species-rich tropical systems exhibit markedly lower maximum densities, they may be particularly susceptible to stochastic extinction. PMID:26791611

  18. Use of rehabilitation experiments to understand the recovery dynamics of acid-stressed fish populations.

    PubMed

    Snucins, Ed; Gunn, John M

    2003-04-01

    We used rehabilitation experiments involving the stocking of 2 native sportfish, lake trout (Salvelinus namaycush) and smallmouth bass (Micropterus dolomieu), in combination with recent fish community surveys, to study the recovery dynamics of fish populations in acid-stressed lakes near Sudbury and Killarney, Ontario, Canada. Population recovery rates differed between the 2 species. Introduced lake trout did poorly in species-rich lakes and exhibited slower growth, lower survival and delayed recruitment. Smallmouth bass, in contrast, readily colonized species-rich lakes. The biomass of natural smallmouth bass recruits increased to reference lake levels within 5 years following water quality recovery and spawning by stocked fish, whereas the biomass of natural lake trout recruits remained well below reference levels 5-15 years after water quality recovery and spawning by adults occurred. We document introductions by anglers of smallmouth bass into acid-damaged lake trout lakes, including some lakes that did not contain bass prior to acidification. This range expansion of a warm-water species (bass) that can alter food-web structure and reduce the growth of a cold-water species (trout), illustrates the potential for the combination of climate warming and species introductions to greatly alter the biological recovery endpoints in acid-stressed lakes. PMID:12839203

  19. Ocean acidification alters fish populations indirectly through habitat modification

    NASA Astrophysics Data System (ADS)

    Nagelkerken, Ivan; Russell, Bayden D.; Gillanders, Bronwyn M.; Connell, Sean D.

    2016-01-01

    Ocean ecosystems are predicted to lose biodiversity and productivity from increasing ocean acidification. Although laboratory experiments reveal negative effects of acidification on the behaviour and performance of species, more comprehensive predictions have been hampered by a lack of in situ studies that incorporate the complexity of interactions between species and their environment. We studied CO2 vents from both Northern and Southern hemispheres, using such natural laboratories to investigate the effect of ocean acidification on plant-animal associations embedded within all their natural complexity. Although we substantiate simple direct effects of reduced predator-avoidance behaviour by fishes, as observed in laboratory experiments, we here show that this negative effect is naturally dampened when fish reside in shelter-rich habitats. Importantly, elevated CO2 drove strong increases in the abundance of some fish species through major habitat shifts, associated increases in resources such as habitat and prey availability, and reduced predator abundances. The indirect effects of acidification via resource and predator alterations may have far-reaching consequences for population abundances, and its study provides a framework for a more comprehensive understanding of increasing CO2 emissions as a driver of ecological change.

  20. Evidence of melanoma in wild marine fish populations.

    PubMed

    Sweet, Michael; Kirkham, Nigel; Bendall, Mark; Currey, Leanne; Bythell, John; Heupel, Michelle

    2012-01-01

    The increase in reports of novel diseases in a wide range of ecosystems, both terrestrial and marine, has been linked to many factors including exposure to novel pathogens and changes in the global climate. Prevalence of skin cancer in particular has been found to be increasing in humans, but has not been reported in wild fish before. Here we report extensive melanosis and melanoma (skin cancer) in wild populations of an iconic, commercially-important marine fish, the coral trout Plectropomus leopardus. The syndrome reported here has strong similarities to previous studies associated with UV induced melanomas in the well-established laboratory fish model Xiphophorus. Relatively high prevalence rates of this syndrome (15%) were recorded at two offshore sites in the Great Barrier Reef Marine Park (GBRMP). In the absence of microbial pathogens and given the strong similarities to the UV-induced melanomas, we conclude that the likely cause was environmental exposure to UV radiation. Further studies are needed to establish the large scale distribution of the syndrome and confirm that the lesions reported here are the same as the melanoma in Xiphophorus, by assessing mutation of the EGFR gene, Xmrk. Furthermore, research on the potential links of this syndrome to increases in UV radiation from stratospheric ozone depletion needs to be completed. PMID:22870273

  1. Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada

    USGS Publications Warehouse

    Jezorek, Ian G.; Connolly, Patrick J.; Munz, Carrie S.; Dixon, Chris

    2011-01-01

    Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedace were known to exist only within this drainage and were known to have been extirpated from a portion of their former habitat located downstream of Condor Canyon. Because of this extirpation and the limited distribution of Big Spring spinedace, the U.S. Fish and Wildlife Service listed this species as threatened under the Endangered Species Act in 1985. Prior to our effort, little was known about Big Spring spinedace populations or life histories and habitat associations. In 2008, personnel from the U.S. Geological Survey's Columbia River Research Laboratory began surveys of Meadow Valley Wash in Condor Canyon. Habitat surveys characterized numerous variables within 13 reaches, thermologgers were deployed at 9 locations to record water temperatures, and fish populations were surveyed at 22 individual sites. Additionally, fish were tagged with Passive Integrated Transponder (PIT) tags, which allowed movement and growth information to be collected on individual fish. The movements of tagged fish were monitored with a combination of recapture events and stationary in-stream antennas, which detected tagged fish. Meadow Valley Wash within Condor Canyon was divided by a 12-meter (m) waterfall known as Delmue Falls. About 6,100 m of stream were surveyed downstream of the falls and about 2,200 m of stream were surveyed upstream of the falls. Although about three-quarters of the surveyed stream length was downstream of Delmue Falls, the highest densities and abundance of native fish were upstream of the falls. Big Spring spinedace and desert sucker populations were highest near the

  2. Relative distribution and abundance of fishes and crayfish in 2010 and 2014 prior to saltcedar (Tamarix ssp.) removal in the Amargosa River Canyon, southeastern California

    USGS Publications Warehouse

    Hereford, Mark E.

    2016-01-01

    The Amargosa River Canyon, located in the Mojave Desert of southeastern California, contains the longest perennial reach of the Amargosa River. Because of its diverse flora and fauna, it has been designated as an Area of Critical Environmental Concern and a Wild and Scenic River by the Bureau of Land Management. A survey of fishes conducted in summer 2010 indicated that endemic Amargosa River pupfish (Cyprinodon nevadensis amargosae) and speckled dace (Rhinichthys osculus spp.) were abundant and occurred throughout the Amargosa River Canyon. The 2010 survey reported non-native red swamp crayfish (Procambarus clarkii) and western mosquitofish (Gambusia affinis) captures were significantly higher, whereas pupfish captures were lower, in areas dominated by non-native saltcedar (Tamarix ssp.). Based on the 2010 survey, it was hypothesized that the invasion of saltcedar could result in a decrease in native species. In an effort to maintain and enhance native fish populations, the Bureau of Land Management removed saltcedar from a 1,550 meter reach of stream on the Amargosa River in autumn 2014 and autumn 2015. Prior to the removal of saltcedar, a survey of fishes and crayfish using baited minnow traps was conducted in the treatment reach to serve as a baseline for future comparisons with post-saltcedar removal surveys. During the 2014 survey, 1,073 pupfish and 960 speckled dace were captured within the treatment reach. Catch per unit effort of pupfish and speckled dace in the treatment reach was less in 2014 than in 2010, although differences could be owing to seasonal variation in capture probability. Non-native mosquitofish catch per unit effort decreased from 2010 to 2014; however, the catch per unit effort of crayfish increased from 2010 to 2014. Future monitoring efforts of this reach should be conducted at the same time period to account for potential seasonal fluctuations of abundance and distribution of fishes and crayfish. A more robust study design that

  3. Relationship between trawl selectivity and fish body size in a simulated population

    NASA Astrophysics Data System (ADS)

    Sun, Peng; Liang, Zhenlin; Huang, Liuyi; Tang, Yanli; He, Xin

    2013-03-01

    Trawl is a main fishing gear in Chinese fishery, capturing large fish and letting small ones at large. However, long-term use of trawl would result in changes of phenotypic traits of the fish stocks, such as smaller size-at-age and earlier age-at-maturation. In this study, we simulated a fish population with size characteristics of trawl fishing and the population produces one generation of offspring and lives for one year, used trawl to exploit the simulated fish population, and captured individuals by body size. We evaluated the impact of the changes on selectivity parameters, such as selective range and the length at 50% retention. Under fishing pressure, we specified the selectivity parameters, and determined that smaller selection rates and greater length at 50% retention were associated with an increased tendency towards miniaturization.

  4. Fish collagen is an important panallergen in the Japanese population.

    PubMed

    Kobayashi, Y; Akiyama, H; Huge, J; Kubota, H; Chikazawa, S; Satoh, T; Miyake, T; Uhara, H; Okuyama, R; Nakagawara, R; Aihara, M; Hamada-Sato, N

    2016-05-01

    Collagen was identified as a fish allergen in early 2000s. Although its allergenic potential has been suggested to be low, risks associated with collagen as a fish allergen have not been evaluated to a greater extent. In this study, we aimed to clarify the importance of collagen as a fish allergen. Our results showed that 50% of Japanese patients with fish allergy had immunoglobulin E (IgE) against mackerel collagen, whereas 44% had IgE against mackerel parvalbumin. IgE inhibition assay revealed high cross-reactivity of mackerel collagen to 22 fish species (inhibition rates: 87-98%). Furthermore, a recently developed allergy test demonstrated that collagen triggered IgE cross-linking on mast cells. These data indicate that fish collagen is an important and very common panallergen in fish consumed in Japan. The high rate of individuals' collagen allergy may be attributable to the traditional Japanese custom of raw fish consumption. PMID:26785247

  5. CHARACTERIZING POPULATIONS OF THE ESTUARINE FISH FUNDULUS HETEROCLITUS INDIGENOUS TO SITES WITH DIFFERING ENVIRONMENTAL QUALITY

    EPA Science Inventory

    Populations of the non-migratory estuarine fish Fundulus heteroclitus were collected from New Bedford Harbor and distant clean sites to investigate whether indigenous populations have adapted genetically to the harbor's contamination. New Bedford Harbor, a major port in southe...

  6. Assessing changes in amphibian population dynamics following experimental manipulations of introduced fish.

    PubMed

    Pope, Karen L

    2008-12-01

    Sport-fish introductions are now recognized as an important cause of amphibian decline, but few researchers have quantified the demographic responses of amphibians to current options in fisheries management designed to minimize effects on sensitive amphibians. Demographic analyses with mark-recapture data allow researchers to assess the relative importance of survival, local recruitment, and migration to changes in population densities. I conducted a 4-year, replicated whole-lake experiment in the Klamath Mountains of northern California (U.S.A.) to quantify changes in population density, survival, population growth rate, and recruitment of the Cascades frog (Rana cascadae) in response to manipulations of non-native fish populations. I compared responses of the frogs in lakes where fish were removed, in lakes in their naturally fish-free state, and in lakes where fish remained that were either stocked annually or no longer being stocked. Within 3 years of fish removals from 3 lakes, frog densities increased by a factor of 13.6. The survival of young adult frogs increased from 59% to 94%, and realized population growth and recruitment rates at the fish-removal lakes were more than twice as high as the rates for fish-free reference lakes and lakes that contained fish. Population growth in the fish-removal lakes was likely due to better on-site recruitment of frogs to later life stages rather than increased immigration. The effects on R. cascadae of suspending stocking were ambiguous and suggested no direct benefit to amphibians. With amphibians declining worldwide, these results show that active restoration can slow or reverse the decline of species affected by fish stocking within a short time frame. PMID:18680499

  7. Density-dependent processes in the life history of fishes: evidence from laboratory populations of zebrafish Danio rerio.

    PubMed

    Hazlerigg, Charles R E; Lorenzen, Kai; Thorbek, Pernille; Wheeler, James R; Tyler, Charles R

    2012-01-01

    Population regulation is fundamental to the long-term persistence of populations and their responses to harvesting, habitat modification, and exposure to toxic chemicals. In fish and other organisms with complex life histories, regulation may involve density dependence in different life-stages and vital rates. We studied density dependence in body growth and mortality through the life-cycle of laboratory populations of zebrafish Danio rerio. When feed input was held constant at population-level (leading to resource limitation), body growth was strongly density-dependent in the late juvenile and adult phases of the life-cycle. Density dependence in mortality was strong during the early juvenile phase but declined thereafter and virtually ceased prior to maturation. Provision of feed in proportion to individual requirements (easing resource limitation) removed density dependence in growth and substantially reduced density dependence in mortality, thus indicating that 'bottom-up' effects act on growth as well as mortality, but most strongly on growth. Both growth and mortality played an important role in population regulation, with density-dependent growth having the greater impact on population biomass while mortality had the greatest impact on numbers. We demonstrate a clear ontogenic pattern of change in density-dependent processes within populations of a very small (maximum length 5 mm) fish, maintained in constant homogeneous laboratory conditions. The patterns are consistent with those distilled from studies on wild fish populations, indicating the presence of broad ontogenic patterns in density-dependent processes that are invariant to maximum body size and hold in homogeneous laboratory, as well as complex natural environments. PMID:22655056

  8. MODELING THE RESPONSE OF FISH POPULATIONS TO EUTROPHICATION

    EPA Science Inventory

    Eutrophication resulting from nonpoint source pollution is one of the largest environmental problems in lakes and reservoirs around the world. Two characteristics of eutrophication, decreased dissolved oxygen and increased concentration of ammonia, are known to affect fishes, yet...

  9. Estimating Consumption to Biomass Ratio in Non-Stationary Harvested Fish Populations.

    PubMed

    Wiff, Rodrigo; Roa-Ureta, Ruben H; Borchers, David L; Milessi, Andrés C; Barrientos, Mauricio A

    2015-01-01

    The food consumption to biomass ratio (C) is one of the most important population parameters in ecosystem modelling because its quantifies the interactions between predator and prey. Existing models for estimating C in fish populations are per-recruit cohort models or empirical models, valid only for stationary populations. Moreover, empirical models lack theoretical support. Here we develop a theory and derive a general modelling framework to estimate C in fish populations, based on length frequency data and the generalised von Bertalanffy growth function, in which models for stationary populations with a stable-age distributions are special cases. Estimates using our method are compared with estimates from per-recruit cohort models for C using simulated harvested fish populations of different lifespans. The models proposed here are also applied to three fish populations that are targets of commercial fisheries in southern Chile. Uncertainty in the estimation of C was evaluated using a resampling approach. Simulations showed that stationary and non-stationary population models produce different estimates for C and those differences depend on the lifespan, fishing mortality and recruitment variations. Estimates of C using the new model exhibited smoother inter-annual variation in comparison with a per-recruit model estimates and they were also smaller than C predicted by the empirical equations in all population assessed. PMID:26528721

  10. Estimating Consumption to Biomass Ratio in Non-Stationary Harvested Fish Populations

    PubMed Central

    Wiff, Rodrigo; Roa-Ureta, Ruben H.; Borchers, David L.; Milessi, Andrés C.; Barrientos, Mauricio A.

    2015-01-01

    The food consumption to biomass ratio (C) is one of the most important population parameters in ecosystem modelling because its quantifies the interactions between predator and prey. Existing models for estimating C in fish populations are per-recruit cohort models or empirical models, valid only for stationary populations. Moreover, empirical models lack theoretical support. Here we develop a theory and derive a general modelling framework to estimate C in fish populations, based on length frequency data and the generalised von Bertalanffy growth function, in which models for stationary populations with a stable-age distributions are special cases. Estimates using our method are compared with estimates from per-recruit cohort models for C using simulated harvested fish populations of different lifespans. The models proposed here are also applied to three fish populations that are targets of commercial fisheries in southern Chile. Uncertainty in the estimation of C was evaluated using a resampling approach. Simulations showed that stationary and non-stationary population models produce different estimates for C and those differences depend on the lifespan, fishing mortality and recruitment variations. Estimates of C using the new model exhibited smoother inter-annual variation in comparison with a per-recruit model estimates and they were also smaller than C predicted by the empirical equations in all population assessed. PMID:26528721

  11. PREDICTING THE OCCURRANCE OF ADAPTATION TO DIOXINLIKE COMPOUNDS IN POPULATIONS OF THE ESTUARINE FISH FUNDULUS HETEROCLITUS

    EPA Science Inventory

    A population of the non-migratory estuarine fish species Fundulus heteroclitus (mummichog) indigenous to a polychlorinated biphenyl (PCB)-contaminated Superfund site (New Bedford Harbor, NBH, MA, USA) demonstrates an inherited tolerance to local, dioxin-like contaminants (DLCs). ...

  12. Phenotypic plasticity in growth and fecundity induced by strong population fluctuations affects reproductive traits of female fish.

    PubMed

    Karjalainen, Juha; Urpanen, Olli; Keskinen, Tapio; Huuskonen, Hannu; Sarvala, Jouko; Valkeajärvi, Pentti; Marjomäki, Timo J

    2016-02-01

    Fish are known for their high phenotypic plasticity in life-history traits in relation to environmental variability, and this is particularly pronounced among salmonids in the Northern Hemisphere. Resource limitation leads to trade-offs in phenotypic plasticity between life-history traits related to the reproduction, growth, and survival of individual fish, which have consequences for the age and size distributions of populations, as well as their dynamics and productivity. We studied the effect of plasticity in growth and fecundity of vendace females on their reproductive traits using a series of long-term incubation experiments. The wild parental fish originated from four separate populations with markedly different densities, and hence naturally induced differences in their growth and fecundity. The energy allocation to somatic tissues and eggs prior to spawning served as a proxy for total resource availability to individual females, and its effects on offspring survival and growth were analyzed. Vendace females allocated a rather constant proportion of available energy to eggs (per body mass) despite different growth patterns depending on the total resources in the different lakes; investment into eggs thus dictated the share remaining for growth. The energy allocation to eggs per mass was higher in young than in old spawners and the egg size and the relative fecundity differed between them: Young females produced more and smaller eggs and larvae than old spawners. In contrast to earlier observations of salmonids, a shortage of maternal food resources did not increase offspring size and survival. Vendace females in sparse populations with ample resources and high growth produced larger eggs and larvae. Vendace accommodate strong population fluctuations by their high plasticity in growth and fecundity, which affect their offspring size and consequently their recruitment and productivity, and account for their persistence and resilience in the face of high

  13. Deleterious effects in mice of fish-associated methylmercury contained in a diet mimicking the Western populations' average fish consumption.

    PubMed

    Bourdineaud, Jean-Paul; Fujimura, Masatake; Laclau, Muriel; Sawada, Masumi; Yasutake, Akira

    2011-02-01

    Methylmercury (MeHg) is a potent neurotoxin, and human beings are mainly exposed to this pollutant through fish consumption. Only a few contradictory epidemiological studies are currently available examining the impact of fish consumption on human populations. In the present study, we wanted to address whether a diet mimicking the fish consumption of Western populations could result in observable adverse effects in mice, and whether beneficial nutriments from fish were able to counterbalance the deleterious effects of MeHg, if any. In Europe and the United States, fish consumption varies widely between countries, from 11 to 100 g fish/day. A mid-range value of 25 g fish/day corresponds to a fish contribution to the total diet of 1.25% on a dry weight basis. We decided to supplement a vegetarian-based mouse diet with 1.25% of lyophilized salmon flesh (SAL diet), or 1.25% of a blend of lyophilized cod, tuna, and swordfish (CTS diet). Total mercury contents were 1.15±0.15, 2.3±0.1 and 35.75±0.15 ng Hg/g of food pellets for the control, SAL and CTS diets, respectively. After two months feeding, the CTS diet resulted in significant observable effects as compared to the control and SAL diets, encompassing decreased body growth, altered behavioral performance and increased anxiety level, modification of mitochondrial respiratory protein subunit concentrations in kidney and brain structures, modified gene expression patterns in kidneys, liver and muscles, and a decrease of dopamine concentrations in the hypothalamus and striatum. Our findings have health implications, firstly because 1.25% of CTS flesh in the diet corresponds to an average exposure to MeHg below the WHO provisory tolerable weekly intake (PTWI) (1.6 μg MeHg/kg of body weight/week), and secondly because many people in Western populations, among them women of child-bearing age, are exceeding the PTWI value (for instance, 35% of the French population inhabiting the Atlantic and Mediterranean coasts). PMID

  14. Effects of stream acidification and habitat on fish populations of a North American river

    USGS Publications Warehouse

    Baldigo, Barry P.; Lawrence, G.B.

    2001-01-01

    Water quality, physical habitat, and fisheries at sixteen reaches in the Neversink River Basin were studied during 1991-95 to identify the effects of acidic precipitation on stream-water chemistry and on selected fish-species populations, and to test the hypothesis that the degree of stream acidification affected the spatial distribution of each fish-species population. Most sites on the East Branch Neversink were strongly to severely acidified, whereas most sites on the West Branch were minimally to moderately acidified. Mean density of fish populations ranged from 0 to 2.15 fish/m2; biomass ranged from 0 to 17.5 g/m2. Where brook trout were present, their population density ranged from 0.04 to 1.09 fish/m2, biomass ranged from 0.76 to 12.2 g/m2, and condition (K) ranged from 0.94 to 1.07. Regression analyses revealed strong relations (r2 ?? 0.41 to 0.99; p ??? 0.05) between characteristics of the two most common species (brook trout and slimy sculpin) populations and mean concentrations of inorganic monomeric aluminum (Alim), pH, Si, K+, NO3/-, NH4/+, DOC, Ca2+, and Na+; acid neutralizing capacity (ANC); and water temperature. Stream acidification may have adversely affected fish populations at most East Branch sites, but in other parts of the Neversink River Basin these effects were masked or mitigated by other physical habitat, geochemical, and biological factors.

  15. Paleoecological studies on variability in marine fish populations: A long-term perspective on the impacts of climatic change on marine ecosystems

    NASA Astrophysics Data System (ADS)

    Finney, Bruce P.; Alheit, Jürgen; Emeis, Kay-Christian; Field, David B.; Gutiérrez, Dimitri; Struck, Ulrich

    2010-02-01

    The use of historical fishing records to understand relationships between climatic change and fish abundance is limited by the relatively short duration of these records, and complications due to the strong influence of human activity in addition to climatic change. Sedimentary records containing scales, bones or geochemical proxies of variability in fish populations provide unique insights on long-term ecosystem dynamics and relationships with climatic change. Available records from Holocene sediments are summarized and synthesized. The records are from several widespread locations near or along the continental margins of the South Atlantic and Pacific oceans, including Alaska, USA (Pacific salmon), Saanich and Effingham Inlets, British Columbia, Canada (pelagic fish), Santa Barbara Basin, California, USA (Northern anchovies and Pacific sardines), Gulf of California, Mexico (Pacific sardines, Northern anchovies and Pacific hake), Peru upwelling system (sardines, anchovies and hake), and Benguela Current System, South Africa (sardines, anchovies and hake). These records demonstrate that fish population sizes are not constant, and varied significantly over a range of time scales prior to the advent of large-scale commercial fishing. In addition to the decadal-scale variability commonly observed in historical records, the long-term records reveal substantial variability over centennial and millennial time scales. Shifts in abundance are often, but not always, correlated with regional and/or global climatic changes. The long-term perspective reveals different patterns of variability in fish populations, as well as fish-climate relationships, than suggested by analysis of historical records. Many records suggest prominent changes in fish abundance at ca. 1000-1200 AD, during the Little Ice Age, and during the transition at the end of the Little Ice Age in the 19th century that may be correlative, and that were likely driven by major hemispheric or global

  16. Sampling characteristics and calibration of snorkel counts to estimate stream fish populations

    USGS Publications Warehouse

    Weaver, D.; Kwak, Thomas J.; Pollock, Kenneth

    2014-01-01

    Snorkeling is a versatile technique for estimating lotic fish population characteristics; however, few investigators have evaluated its accuracy at population or assemblage levels. We evaluated the accuracy of snorkeling using prepositioned areal electrofishing (PAE) for estimating fish populations in a medium-sized Appalachian Mountain river during fall 2008 and summer 2009. Strip-transect snorkel counts were calibrated with PAE counts in identical locations among macrohabitats, fish species or taxa, and seasons. Mean snorkeling efficiency (i.e., the proportion of individuals counted from the true population) among all taxa and seasons was 14.7% (SE, 2.5%), and the highest efficiencies were for River Chub Nocomis micropogon at 21.1% (SE, 5.9%), Central Stoneroller Campostoma anomalum at 20.3% (SE, 9.6%), and darters (Percidae) at 17.1% (SE, 3.7%), whereas efficiencies were lower for shiners (Notropis spp., Cyprinella spp., Luxilus spp.) at 8.2% (SE, 2.2%) and suckers (Catostomidae) at 6.6% (SE, 3.2%). Macrohabitat type, fish taxon, or sampling season did not significantly explain variance in snorkeling efficiency. Mean snorkeling detection probability (i.e., probability of detecting at least one individual of a taxon) among fish taxa and seasons was 58.4% (SE, 6.1%). We applied the efficiencies from our calibration study to adjust snorkel counts from an intensive snorkeling survey conducted in a nearby reach. Total fish density estimates from strip-transect counts adjusted for snorkeling efficiency were 7,288 fish/ha (SE, 1,564) during summer and 15,805 fish/ha (SE, 4,947) during fall. Precision of fish density estimates is influenced by variation in snorkeling efficiency and sample size and may be increased with additional sampling effort. These results demonstrate the sampling properties and utility of snorkeling to characterize lotic fish assemblages with acceptable efficiency and detection probability, less effort, and no mortality, compared with traditional

  17. STREAM FISH HABITAT SUITABILITY AND THE RISK OF POPULATION DECLINE

    EPA Science Inventory

    Over half of the streams in the Mid-Atlantic Highlands have fish communities that are in fair or poor condition, and the EPA concluded that physical habitat alteration represents the greatest potential stressor across this region. A quantitative method for relating habitat quali...

  18. Pathogens associated with native and exotic trout populations in Shenandoah National Park and the relationships to fish stocking practices

    USGS Publications Warehouse

    Panek, Frank M.; Atkinson, James; Coll, John

    2008-01-01

    Restrictive fish stocking policies in National Parks were developed as early as 1936 in order to preserve native fish assemblages and historic genetic diversity. Despite recent efforts to understand the effects of non-native or exotic fish introductions, park managers have limited information regarding the effects of these introductions on native fish communities. Shenandoah National Park was established in 1936 and brook trout (Salvelinus fontinalis) restoration within selected streams in the park began in 1937 in collaboration with the Virginia Department of Game and Inland Fisheries (VDGIF). An analysis of tissue samples from brook, brown (Salmo trutta), and rainbow trout (Oncorhynchus mykiss) from 29 streams within the park from 1998–2002 revealed the presence of Renibacterium salmoninarum, Yersinia ruckeri, and infectious pancreatic necrosis virus (IPNv). In order to investigate the relationships of the occurrence of fish pathogens with stocking histories we classified the streams into three categories: 1) streams with no record of stocking, 2) streams that are known to have been stocked historically, and 3) streams that were historically stocked within the park and continue to be stocked downstream of the park boundary. The occurrences of pathogens were summarized relative to this stocking history. Renibacterium salmoninarum, the causative agent of bacterial kidney disease, was the most prevalent pathogen found, occurring in all three species and stream stocking categories, and appears to be endemic to the park. Two other pathogens, Yersinia ruckeri and infectious pancreatic necrosis virus were also described from brook trout populations within the park. IPNv was only found in brook trout populations in streams with prior stocking histories. Yersinia ruckeri was only found in brook trout in steams that have never been stocked and like R. salmoninarum, is likely endemic.

  19. A population assessment of mercury exposure from two cities of Pakistan with respect to freshwater and marine fish consumption.

    PubMed

    Shah, Abdul Qadir; Kazi, Tasneem Gul; Afridi, Hassan Imran; Arain, Mohammad Balal

    2016-06-01

    In this study, we aimed to estimate the level of mercury (Hg) in scalp hair samples of human subjects and its association with consumption of sea- and freshwater fish species. The scalp hairs were collected from both genders (male and female) aged between 15 and 50 years (n = 200), living in coastal areas of Karachi, who mostly consumed sea fish species, referred to as exposed subjects. For comparison purposes, scalp hair samples of both genders (n = 160) were collected from the inhabitants of Karachi and Hyderabad cities who consumed freshwater fish species termed as referent subjects. The frequently consumed fresh and marine fish species were also collected. The level of Hg was determined in fish and scalp hair samples by cold vapor atomic absorption spectrometry, prior to ultrasonic-assisted acid digestion in a mixture of nitric acid and hydrogen peroxide. The validity of methodology was checked by certified reference material (CRM) BCR 397 (human hair) and DORM-2. The concentrations of Hg in sea- and freshwater fish were found in the range of 1.47-2.09 and 0.402-0.676 μg/g, respectively. The exposed subjects had significantly elevated levels of Hg in scalp hair samples (1.8-4.3 μg/g) as compared to referent subjects (0.87-1.95 μg/g) (p < 0.001). A significant positive correlation was obtained between the concentration of Hg in hair and age of study population. Exposed and referent female subjects had higher levels of Hg in scalp hair than that in males of both study groups (p = 0.02-0.031). PMID:25147303

  20. Space-time investigation of the effects of fishing on fish populations.

    PubMed

    Ono, Kotaro; Shelton, Andrew O; Ward, Eric J; Thorson, James T; Feist, Blake E; Hilborn, Ray

    2016-03-01

    Species distribution models (SDMs) are important statistical tools for obtaining ecological insight into species-habitat relationships and providing advice for natural resource management. Many SDMs have been developed over the past decades, with a focus on space- and more recently, time-dependence. However, most of these studies have been on terrestrial species and applications to marine species have been limited. In this study, we used three large spatio-temporal data sources (habitat maps, survey-based fish density estimates, and fishery catch data) and a novel space-time model to study how the distribution of fishing may affect the seasonal dynamics of a commercially important fish species (Pacific Dover sole, Microstomus pacificus) off the west coast of the USA. Dover sole showed a large scale change in seasonal and annual distribution of biomass, and its distribution shifted from mid-depth zones to inshore or deeper waters during late summer/early fall. In many cases, the scale of fishery removal was small compared to these broader changes in biomass, suggesting that seasonal dynamics were primarily driven by movement and not by fishing. The increasing availability of appropriate data and space-time modeling software should facilitate extending this work to many other species, particularly those in marine ecosystems, and help tease apart the role of growth, natural mortality, recruitment, movement, and fishing on spatial patterns of species distribution in marine systems. PMID:27209782

  1. Effects of a single intensive harvest event on fish populations inside a customary marine closure

    NASA Astrophysics Data System (ADS)

    Jupiter, S. D.; Weeks, R.; Jenkins, A. P.; Egli, D. P.; Cakacaka, A.

    2012-06-01

    In September 2008, the villagers of Kia Island, Fiji, opened their customary managed closure (Cakaulevu tabu) to fishing for a fundraiser that lasted for 5 weeks. We report on opportunistic before-after-control-impact surveys describing changes to coral reef communities both 4 weeks into the harvest and 1 year later compared with pre-harvest conditions. Prior to the harvest, there was a gradient in mean fish abundance and biomass per transect, with highest levels in the north of the closure (250 fish transect-1, 8,145.8 kg ha-1), intermediate levels in the south of the closure (159 fish transect-1, 4,672.1 kg ha-1) and lowest levels in the control area open to fishing (109 fish transect-1, 594.0 kg ha-1). During the harvest, there were extensive depletions in large-bodied, primary targeted fish species, with significant loss in biomass of Acanthuridae and Carangidae in the north and Lutjanidae and Serranidae in the south. We also observed significant increases in Acanthuridae, Lethrinidae and Scaridae in the control, suggesting a "bail-out" effect whereby fish left the closure in response to a rapid increase in fishing pressure. These changes were coupled with a large increase in turf algal cover at all survey areas, despite a large numerical increase in small, roving acanthurids (e.g., Ctenochaetus striatus) and scarids (e.g., Chlorurus sordidus). By 1 year later, fish biomass was significantly lower within the closure than before the harvest, while values in the control returned to pre-harvest levels, suggesting non-compliance with the reinstated fishing ban. We use the lessons learned from this event to suggest recommendations for promoting effective management of periodically harvested customary closures that are a common feature across much of Oceania.

  2. Fishery-Independent Data Reveal Negative Effect of Human Population Density on Caribbean Predatory Fish Communities

    PubMed Central

    Stallings, Christopher D.

    2009-01-01

    Background Understanding the current status of predatory fish communities, and the effects fishing has on them, is vitally important information for management. However, data are often insufficient at region-wide scales to assess the effects of extraction in coral reef ecosystems of developing nations. Methodology/Principal Findings Here, I overcome this difficulty by using a publicly accessible, fisheries-independent database to provide a broad scale, comprehensive analysis of human impacts on predatory reef fish communities across the greater Caribbean region. Specifically, this study analyzed presence and diversity of predatory reef fishes over a gradient of human population density. Across the region, as human population density increases, presence of large-bodied fishes declines, and fish communities become dominated by a few smaller-bodied species. Conclusions/Significance Complete disappearance of several large-bodied fishes indicates ecological and local extinctions have occurred in some densely populated areas. These findings fill a fundamentally important gap in our knowledge of the ecosystem effects of artisanal fisheries in developing nations, and provide support for multiple approaches to data collection where they are commonly unavailable. PMID:19421312

  3. Evaluation of trawls for monitoring and harvesting fish populations in Lake Oahe, South Dakota

    USGS Publications Warehouse

    Nelson, William R.; Boussu, Marvin S.

    1974-01-01

    Trawls of various designs and sizes were compared to evaluate their use for monitoring and harvesting fish populations in Lake Oahe. Catches of a 10.7-m semiballoon trawl, selected to monitor changes in the fish populations from 1965 to 1970, showed a downward trend in the abundance of all species, except walleye; the decline was largest in the lower area of the reservoir with a slight increase in the upper area. Of two trawl designs tested, semiballoon trawls captured more fish per hour than high-rise trawls, and a 15.9-m semiballoon trawl with a 3.8-cm mesh cod end captured fish at the highest and most consistent rate. The size and species composition of fish caught in small-mesh trawls differed from those caught in trap nets. Trawl catches were too small to recommend or warrant their use as a commercial fishing gear, but the use of both small mesh trawls and trap nets should improve accuracy in monitoring fish populations in this reservoir.

  4. Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population

    PubMed Central

    Stiasny, Martina H.; Mittermayer, Felix H.; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B. H.; Clemmesen, Catriona

    2016-01-01

    How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae’s sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks. PMID:27551924

  5. Viability analysis of reef fish populations based on limited demographic information.

    PubMed

    Wielgus, Jeffrey; Ballantyne, Ford; Sala, Enric; Gerber, Leah R

    2007-04-01

    Marine protected areas (MPAs) that allow some degree of artisanal fishing have been proposed to control the overexploitation of marine resources while allowing extraction by local communities. Nevertheless, the management of MPAs is often impaired by the absence of data on the status of their resources. We devised a method to estimate population growth rates with the type of data that are usually available for reef fishes. We used 7 years of spatially explicit abundance data on the leopard grouper (Mycteroperca rosacea) in an MPA in the Gulf of California, Mexico, to construct a matrix population model that incorporated the effects of El Niño/La Niña Southern Oscillation on population dynamics. An environmental model that estimated different demographic estimates for El Niño and La Niña periods performed better than a single-environment model, and a single-habitat model performed better than a model that considered different depths as different habitats. Our results suggest that the population of the leopard grouper off the main island of the MPA is not viable under present conditions. Although the impact of fishing on leopard grouper populations in the MPA has not yet been established, fishing should be closed as a precautionary measure at this island if a priority of the MPA is to ensure the sustainability of its fish populations. PMID:17391194

  6. Length-Based Assessment of Coral Reef Fish Populations in the Main and Northwestern Hawaiian Islands

    PubMed Central

    Nadon, Marc O.; Ault, Jerald S.; Williams, Ivor D.; Smith, Steven G.; DiNardo, Gerard T.

    2015-01-01

    The coral reef fish community of Hawaii is composed of hundreds of species, supports a multimillion dollar fishing and tourism industry, and is of great cultural importance to the local population. However, a major stock assessment of Hawaiian coral reef fish populations has not yet been conducted. Here we used the robust indicator variable “average length in the exploited phase of the population (L¯)”, estimated from size composition data from commercial fisheries trip reports and fishery-independent diver surveys, to evaluate exploitation rates for 19 Hawaiian reef fishes. By and large, the average lengths obtained from diver surveys agreed well with those from commercial data. We used the estimated exploitation rates coupled with life history parameters synthesized from the literature to parameterize a numerical population model and generate stock sustainability metrics such as spawning potential ratios (SPR). We found good agreement between predicted average lengths in an unfished population (from our population model) and those observed from diver surveys in the largely unexploited Northwestern Hawaiian Islands. Of 19 exploited reef fish species assessed in the main Hawaiian Islands, 9 had SPRs close to or below the 30% overfishing threshold. In general, longer-lived species such as surgeonfishes, the redlip parrotfish (Scarus rubroviolaceus), and the gray snapper (Aprion virescens) had the lowest SPRs, while short-lived species such as goatfishes and jacks, as well as two invasive species (Lutjanus kasmira and Cephalopholis argus), had SPRs above the 30% threshold. PMID:26267473

  7. Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population.

    PubMed

    Stiasny, Martina H; Mittermayer, Felix H; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B H; Clemmesen, Catriona

    2016-01-01

    How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae's sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks. PMID:27551924

  8. Length-based assessment of coral reef fish populations in the main and northwestern Hawaiian islands.

    PubMed

    Nadon, Marc O; Ault, Jerald S; Williams, Ivor D; Smith, Steven G; DiNardo, Gerard T

    2015-01-01

    The coral reef fish community of Hawaii is composed of hundreds of species, supports a multimillion dollar fishing and tourism industry, and is of great cultural importance to the local population. However, a major stock assessment of Hawaiian coral reef fish populations has not yet been conducted. Here we used the robust indicator variable "average length in the exploited phase of the population ([Formula: see text])", estimated from size composition data from commercial fisheries trip reports and fishery-independent diver surveys, to evaluate exploitation rates for 19 Hawaiian reef fishes. By and large, the average lengths obtained from diver surveys agreed well with those from commercial data. We used the estimated exploitation rates coupled with life history parameters synthesized from the literature to parameterize a numerical population model and generate stock sustainability metrics such as spawning potential ratios (SPR). We found good agreement between predicted average lengths in an unfished population (from our population model) and those observed from diver surveys in the largely unexploited Northwestern Hawaiian Islands. Of 19 exploited reef fish species assessed in the main Hawaiian Islands, 9 had SPRs close to or below the 30% overfishing threshold. In general, longer-lived species such as surgeonfishes, the redlip parrotfish (Scarus rubroviolaceus), and the gray snapper (Aprion virescens) had the lowest SPRs, while short-lived species such as goatfishes and jacks, as well as two invasive species (Lutjanus kasmira and Cephalopholis argus), had SPRs above the 30% threshold. PMID:26267473

  9. Genetic evidence of population structuring in the neotropical freshwater fish Brycon hilarii (Valenciennes, 1850).

    PubMed

    Sanches, A; Galetti Jr, P M

    2007-12-01

    Brycon hilarii is a migratory fish widely distributed throughout the Paraguay River Basin. It is appreciated in sport fishing and for its superior meat quality. It is also the main species for tourist attraction in the Bonito region (State of Mato Grosso do Sul, Brazil). Considering the lack of information on the genetic structure of the fish of this species, the aim of the present study was to detect the genetic variability of Brycon hilarii through RAPD markers. A total of eighty specimens collected in different seasons at four sites of the Miranda River sub-basin (Paraguay River Basin, Brazil) were used for analysis. The results of genetic similarity, Shannon diversity, and AMOVA revealed differences between the sampling sites. Through AMOVA, differences between populations were more evident among the animals collected during the non-reproductive season, corresponding to a time of less movement of these fish. A population structuring model in which B. hilarii appears organized into genetically differentiated reproductive units that coexist and co-migrate through the studied system was suggested, contrasting the currently accepted idea that freshwater migratory fish form large panmictic populations in a determined hydrographic system. Despite the lack of a complete picture regarding the distribution of B. hilarii in the studied region, this initial idea on its population genetic structure could be an important contribution to providing aid for management and conservation programs of these fish. PMID:18278356

  10. Assessing risks to fish populations near a proposed disposal facility for used nuclear fuel

    SciTech Connect

    Hart, D.; Miesenheimer, P.; Hull, R.

    1995-12-31

    The concept of used nuclear fuel disposal in the Canadian Shield is currently undergoing a federal environmental assessment review process. As part of this review, potential risks to brook trout populations in the vicinity of such an underground repository were considered. Chemical fate, transport and exposure models have been utilized to estimate the dose rates from released radionuclides and other fuel constituents, and these likely will not be sufficient to harm fish in nearby streams. However, other stressors such as habitat alteration (e.g., loss of upwelling) and/or fishing pressure associated with increased public access could have significant population impacts if the site is located in a pristine northern region. Population models are utilized to explore the risks of local population reduction for different combinations of fishing pressure and habitat degradation.

  11. Kelp forest fish populations in marine reserves and adjacent exploited areas of central California

    USGS Publications Warehouse

    Paddack, M.J.; Estes, J.A.

    2000-01-01

    Population structure (density and size distribution) of 10 species of epibenthic kelp forest fishes was compared between three marine reserves and adjacent exploited areas in central California. We also contrasted substrate relief, algal turf cover, and kelp population density among these areas. Densities of fishes were 12-35% greater within the reserves, but this difference was not statistically) significant. Habitat features explained only 4% of the variation in fish density and did not vary consistently between reserves and nonreserves. The average length of rockfish (genus Sebastes) was significantly greater in two of the three reserve sites, as was the proportion of larger fish. Population density and size differences combined to produce substantially greater biomass and, therefore, greater reproductive potential per unit of area within the reserves. The magnitude of these effects seems to be influenced by the reserve's age. Our findings demonstrate that current levels of fishing pressure influence kelp forest rockfish populations and suggest that this effect is widespread in central California. Existing marine reserves in central California kelp forests may help sustain exploited populations both through adult emigration and larval pool augmentation. The magnitude of these effects remains uncertain, however, because the spatial scale of both larval and adult dispersal relative to the size of existing reserves is unknown.

  12. Fish and Shellfish Intake and Diabetes in a Costal Population of the Adriatic.

    PubMed

    Sahay, Rashmi D; Ollberding, Nicholas J; Missoni, Saša; Novokmet, Natalija; Sarac, Jelena; Sarić, Tena; Rao, Marepalli B; Rudan, Pavao; Deka, Ranjan

    2015-06-01

    The objective of the study was to examine the association between fish and shellfish intake and diabetes in an island population, and the design of the study was Cross-sectional. Two independent population-based field surveys were conducted in Hvar Island of the eastern Adriatic coast of Croatia in May 2007 and May 2008, with a total of 1,379 adult participants. In multivariable logistic regression models, total fish intake was positively associated with diabetes prevalence in the total population (OR(Q4 vs. Q1) = 1.64; 95% CI = 1.01-2.66; p-trend = 0.09). Oily fish intake also exhibited a positive association with diabetes prevalence in the total population (OR(Q4 vs. Q1) = 2.22; 95% CI = 1.35-3.64; p-trend = 0.01) and in analyses stratified by body mass index, males and those with a high waist circumference. The study suggests an association between oily fish intake and diabetes in the population of the Hvar Island in Croatia. Longitudinal studies incorporating measures of persistent organic pollutants and local cooking practices are warranted to identify factors in fatty fish that may influence the development or persistence of diabetes. PMID:26753457

  13. Putting pharmaceuticals into the wider context of challenges to fish populations in rivers

    PubMed Central

    Johnson, Andrew C.; Sumpter, John P.

    2014-01-01

    The natural range of fish species in our rivers is related to flow, elevation, temperature, local habitat and connectivity. For over 2000 years, humans have altered to varying degrees the river habitat. In the past 200 years, we added to the environmental disruption by discharging poorly treated sewage, nutrients and industrial waste into our rivers. For many rivers, the low point arrived during the period of 1950s–1970s, when rapid economic development overrode environmental concerns and dissolved oxygen concentrations dropped to zero. In these more enlightened times, gross river pollution is a thing of the past in the Developed World. However, persistent legacy chemical contaminants can be found in fish long after their discharge ceased. Changes in habitat quality and morphology caused and continue to cause the disappearance of fish species. The range of fish stressors has now increased as temperatures rise, and non-native fish introductions bring new diseases. The threat from pharmaceuticals to fish populations remains hypothetical, and no studies have yet linked change in fish populations to exposure. PMID:25405969

  14. Contaminant effects on Great Lakes' fish-eating birds: a population perspective

    USGS Publications Warehouse

    Heinz, G.H.

    1998-01-01

    Preventing environmental contaminants from reducing wildlife populations is the greatest concern in wildlife toxicology. In the Great Lakes, environmental contaminants have a history of reducing populations of many species of fish-eating birds. Endocrine effects may have contributed to declines in fish-eating bird populations, but the overriding harm was caused by DDE-induced eggshell thinning. Toxic effects may still be occurring today, but apparently they are not of a sufficient magnitude to depress populations of most fish-eating birds. Once DDE levels in the Great Lakes declined, eggshells of birds began to get thicker and reproductive success improved. Populations of double-crested cormorants (Phalacrocorax auritus) and ring-billed gulls (Larus delawarensis) have increased dramatically since the bans on DDT and other organochlorine pesticides. Bald eagles (Haliaeetus leucocephalus) are still not reproducing at a normal rate along the shores of the Great Lakes, but success is much improved compared to earlier records when eggshell thinning was worse. Other species, such as herring gulls (Larus argentatus) and black-crowned night-herons (Nycticorax nycticorax), seem to be having improved reproductive success, but data on Great Lakes'-wide population changes are incomplete. Reproductive success of common terns (Sterna hirundo), Caspian terns (Sterna caspia), and Forster's terns (Sterna forsteri) seems to have improved in recent years, but, again, data on population changes are not very complete, and these birds face many habitat related problems as well as contaminant problems. Although contaminants are still producing toxic effects, and these effects may include endocrine disfunction, fish-eating birds in the Great Lakes seem to be largely weathering these effects, at least as far as populations are concerned. A lack of obvious contaminant effects on populations of fish-eating birds in the Great Lakes, however, should not be equated with a lack of any harm to

  15. Changes in habitat of fish populations: An inverse problem.

    PubMed

    Levere, Kimberly M

    2016-08-01

    Mathematical modelling applies to a wide variety of application areas, and is an active area of research in many disciplines. It is often the case that accurate depiction of real-world phenomena require increasingly complex models. Unfortunately, this increased complexity in a model causes great difficulty when seeking solutions. What is more, developing a model with known parameters that produces results consistent with observed behaviors may prove to be a difficult or even impossible task. These difficulties have brought about an interest in inverse problems. In this paper we utilize a collage-based approach to solve an inverse problem for a model for the migration of three fish species through floodplain waters. A derivation of the mathematical model is presented and a generalized collage method is discussed and applied to this model to recover diffusion parameters. Theoretical and numerical particulars are discussed and results are presented. PMID:27245383

  16. Vicariance and dispersal across Baja California in disjunct marine fish populations.

    PubMed

    Bernardi, Giacomo; Findley, Lloyd; Rocha-Olivares, Axayacatl

    2003-07-01

    Population disjunctions, as a first step toward complete allopatry, present an interesting situation to study incipient speciation. The geological formation of the Baja California Peninsula currently divides 19 species of fish into disjunct populations that are found on its Pacific Coast and in the northern part of the Gulf of California (also called the Sea of Cortez), but are absent from the Cape (Cabo San Lucas) region. We studied the genetic makeup of disjunct populations for 12 of these 19 fish species. Phylogeographic patterns for the 12 species can be separated into two major classes: a first group (eight species) showed reciprocal monophyly and high genetic divergence between disjunct populations. A second group (four species) displayed what appeared to be panmictic populations. Population structure between Pacific Coast populations, across the Punta Eugenia biogeographic boundary, was also evaluated. While dispersal potential (inferred by pelagic larval duration) was a poor predictor of population structure between Gulf of California and Pacific populations, we found that population genetic subdivision along the Pacific Coast at Punta Eugenia was always positively correlated with differentiation between Pacific and Gulf of California populations. Vicariant events, ongoing gene flow, and ecological characteristics played essential roles in shaping the population structures observed in this study. PMID:12940364

  17. Fish population losses from Adirondack lakes: The role of surface water acidity and acidification

    SciTech Connect

    Baker, J.P. ); Warren-Hicks, W.J. ); Gallagher, J. ); Christensen, S.W. )

    1993-04-01

    Within the United States, the Adirondack region of New York State has the largest percentage of waters that are acidic and classified as deposition dominated. Thus, the Adirondacks have been the focus of much of the debate regarding the extent and magnitude of effects to date from acidic deposition. Completion of the Adirondack Lakes Survey in 1987, a survey of 1,469 lakes, in combination with the relatively extensive historical record on fish communities in the region, provided the opportunity for a thorough evaluation of changes in Adirondack fish communities over the last 50-60 years, and the degree to which these changes may have resulted from changes in surface water acid-base chemistry. Results indicate that 16-19% of the lakes with adequate historical data appeared to have lost one or more fish populations as a result of acidification. Brook trout and acid-sensitive minnows had experienced the most widespread effects, with losses in 11-19% of the lakes. Fish species occurring in lower elevation and larger lakes such as bass and brown trout, experienced little or no effects. Lakes judged to have lost fish populations to acidification had significantly lower pH and higher concentrations of inorganic aluminum and occurred at higher elevations than other lakes. No other lake characteristics showed consistent associations with fish population losses. Acidification is not the only factor, nor even the dominant factor affecting Adirondack fish communities, however. Other causes of fish loses include lake reclamation, changes in stocking policy, and the introduction (or invasion) of competitors or predators.

  18. A computer program for estimating fish population sizes and annual production rates

    SciTech Connect

    Railsback, S.F.; Holcomb, B.D.; Ryon, M.G.

    1989-10-01

    This report documents a program that estimates fish population sizes and annual production rates in small streams from multiple-pass sampling data. A maximum weighted likelihood method is used to estimate population sizes (Carle and Strub, 1978), and a size-frequency method is used to estimate production (Garman and Waters, 1983). The program performs the following steps: (1) reads in the data and performs error checking; (2) where required, uses length-weight regression to fill in missing weights; (3) assigns length classes to the fish; (4) for each date, species, and length class, estimates the population size and its variance; (5) for each date and species, estimates the total population size and its variance; and (6) for each species, estimates the annual production rate and its variance between sampling dates selected by the user. If data from only date are used, only populations are estimated. 9 refs.

  19. It is the economy, stupid! Projecting the fate of fish populations using ecological-economic modeling.

    PubMed

    Quaas, Martin F; Reusch, Thorsten B H; Schmidt, Jörn O; Tahvonen, Olli; Voss, Rudi

    2016-01-01

    Four marine fish species are among the most important on the world market: cod, salmon, tuna, and sea bass. While the supply of North American and European markets for two of these species - Atlantic salmon and European sea bass - mainly comes from fish farming, Atlantic cod and tunas are mainly caught from wild stocks. We address the question what will be the status of these wild stocks in the midterm future, in the year 2048, to be specific. Whereas the effects of climate change and ecological driving forces on fish stocks have already gained much attention, our prime interest is in studying the effects of changing economic drivers, as well as the impact of variable management effectiveness. Using a process-based ecological-economic multispecies optimization model, we assess the future stock status under different scenarios of change. We simulate (i) technological progress in fishing, (ii) increasing demand for fish, and (iii) increasing supply of farmed fish, as well as the interplay of these driving forces under different scenarios of (limited) fishery management effectiveness. We find that economic change has a substantial effect on fish populations. Increasing aquaculture production can dampen the fishing pressure on wild stocks, but this effect is likely to be overwhelmed by increasing demand and technological progress, both increasing fishing pressure. The only solution to avoid collapse of the majority of stocks is institutional change to improve management effectiveness significantly above the current state. We conclude that full recognition of economic drivers of change will be needed to successfully develop an integrated ecosystem management and to sustain the wild fish stocks until 2048 and beyond. PMID:26348787

  20. An empirical model for estimating annual consumption by freshwater fish populations

    USGS Publications Warehouse

    Liao, H.; Pierce, C.L.; Larscheid, J.G.

    2005-01-01

    Population consumption is an important process linking predator populations to their prey resources. Simple tools are needed to enable fisheries managers to estimate population consumption. We assembled 74 individual estimates of annual consumption by freshwater fish populations and their mean annual population size, 41 of which also included estimates of mean annual biomass. The data set included 14 freshwater fish species from 10 different bodies of water. From this data set we developed two simple linear regression models predicting annual population consumption. Log-transformed population size explained 94% of the variation in log-transformed annual population consumption. Log-transformed biomass explained 98% of the variation in log-transformed annual population consumption. We quantified the accuracy of our regressions and three alternative consumption models as the mean percent difference from observed (bioenergetics-derived) estimates in a test data set. Predictions from our population-size regression matched observed consumption estimates poorly (mean percent difference = 222%). Predictions from our biomass regression matched observed consumption reasonably well (mean percent difference = 24%). The biomass regression was superior to an alternative model, similar in complexity, and comparable to two alternative models that were more complex and difficult to apply. Our biomass regression model, log10(consumption) = 0.5442 + 0.9962??log10(biomass), will be a useful tool for fishery managers, enabling them to make reasonably accurate annual population consumption predictions from mean annual biomass estimates. ?? Copyright by the American Fisheries Society 2005.

  1. Discrimination of fish populations using parasites: Random Forests on a 'predictable' host-parasite system.

    PubMed

    Pérez-Del-Olmo, A; Montero, F E; Fernández, M; Barrett, J; Raga, J A; Kostadinova, A

    2010-10-01

    We address the effect of spatial scale and temporal variation on model generality when forming predictive models for fish assignment using a new data mining approach, Random Forests (RF), to variable biological markers (parasite community data). Models were implemented for a fish host-parasite system sampled along the Mediterranean and Atlantic coasts of Spain and were validated using independent datasets. We considered 2 basic classification problems in evaluating the importance of variations in parasite infracommunities for assignment of individual fish to their populations of origin: multiclass (2-5 population models, using 2 seasonal replicates from each of the populations) and 2-class task (using 4 seasonal replicates from 1 Atlantic and 1 Mediterranean population each). The main results are that (i) RF are well suited for multiclass population assignment using parasite communities in non-migratory fish; (ii) RF provide an efficient means for model cross-validation on the baseline data and this allows sample size limitations in parasite tag studies to be tackled effectively; (iii) the performance of RF is dependent on the complexity and spatial extent/configuration of the problem; and (iv) the development of predictive models is strongly influenced by seasonal change and this stresses the importance of both temporal replication and model validation in parasite tagging studies. PMID:20602856

  2. Compensatory mechanisms in fish populations: Literature reviews: Volume 1, Critical evaluation of case histories of fish populations experiencing chronic exploitation or impact: Final report

    SciTech Connect

    Saila, S.B.; Chen, X.; Erzini, K.; Martin, B.

    1987-05-01

    This study includes case histories of certain fish species which are experiencing chronic perturbations and related literature pertaining to compensation processes. ''Compensation'' has been defined as the ability of fish to offset the population reduction caused by natural or man-induced stresses. Certain compensation methods are widely accepted, and include cannibalism, competition, disease, growth and predation, among others. These compensation methods are examined in relation to each fish species included in the study. Stock-recruit relationships and empirical observations of changes in growth and mortality have been the focus of much of the background on compensation. One of the conclusions drawn from this study is that a significant amount of recruitment variability exists and can be attributed to environmental (rather than compensatory) factors. The stock-recruitment problem appears to be the most significant scientific problem related to compensation in the types of fish included in this study. Results of the most recent studies of the American shad support this theory. Life histories, breeding biology and other pertinent data relating to each species included in the study will be found in the appendices.

  3. Tuning stochastic matrix models with hydrologic data to predict the population dynamics of a riverine fish

    USGS Publications Warehouse

    Sakaris, P.C.; Irwin, E.R.

    2010-01-01

    We developed stochastic matrix models to evaluate the effects of hydrologic alteration and variable mortality on the population dynamics of a lotie fish in a regulated river system. Models were applied to a representative lotic fish species, the flathead catfish (Pylodictis olivaris), for which two populations were examined: a native population from a regulated reach of the Coosa River (Alabama, USA) and an introduced population from an unregulated section of the Ocmulgee River (Georgia, USA). Size-classified matrix models were constructed for both populations, and residuals from catch-curve regressions were used as indices of year class strength (i.e., recruitment). A multiple regression model indicated that recruitment of flathead catfish in the Coosa River was positively related to the frequency of spring pulses between 283 and 566 m3/s. For the Ocmulgee River population, multiple regression models indicated that year class strength was negatively related to mean March discharge and positively related to June low flow. When the Coosa population was modeled to experience five consecutive years of favorable hydrologic conditions during a 50-year projection period, it exhibited a substantial spike in size and increased at an overall 0.2% annual rate. When modeled to experience five years of unfavorable hydrologic conditions, the Coosa population initially exhibited a decrease in size but later stabilized and increased at a 0.4% annual rate following the decline. When the Ocmulgee River population was modeled to experience five years of favorable conditions, it exhibited a substantial spike in size and increased at an overall 0.4% annual rate. After the Ocmulgee population experienced five years of unfavorable conditions, a sharp decline in population size was predicted. However, the population quickly recovered, with population size increasing at a 0.3% annual rate following the decline. In general, stochastic population growth in the Ocmulgee River was more

  4. Vertical and horizontal distributions of coral-reef fish larvae in open water immediately prior to reef colonization.

    PubMed

    Lecchini, D; Waqalevu, V P; Holles, S; Lerohellec, M; Brie, C; Simpson, S D

    2013-06-01

    To explore the vertical and horizontal distributions of fish larvae near the end of their pelagic period, six light traps were set up over four lunar months at different depths (sub-surface, midwater and bottom) and different habitat types (reef slope: 50 m horizontal distance from the reef crest; frontier zone: 110 m horizontal distance; sandy zone: 200 m horizontal distance) on the outer reef slope of Moorea Island, French Polynesia. The highest captures were in sub-surface traps on the reef slope and the frontier zone, and in bottom traps on the sandy zone and the frontier zone. It is hypothesized that fish larvae move towards the surface near the reef slope to avoid reef-based planktivores and to get into a favourable position for surfing over the reef crest. PMID:23731158

  5. Impacts of invasive fish removal through angling on population characteristics and juvenile growth rate.

    PubMed

    Evangelista, Charlotte; Britton, Robert J; Cucherousset, Julien

    2015-06-01

    Exploitation can modify the characteristics of fish populations through the selective harvesting of individuals, with this potentially leading to rapid ecological and evolutionary changes. Despite the well-known effects of invasive fishes on aquatic ecosystems generally, the potential effects of their selective removal through angling, a strategy commonly used to manage invasive fish, are poorly understood. The aim of this field-based study was to use the North American pumpkinseed Lepomis gibbosus as the model species to investigate the consequences of selective removal on their population characteristics and juvenile growth rates across 10 populations in artificial lakes in southern France. We found that the maximal individual mass in populations decreased as removal pressure through angling increased, whereas we did not observed any changes in the maximal individual length in populations as removal pressure increased. Total population abundance did not decrease as removal pressure increased; instead, here was a U-shaped relationship between removal pressure and the abundance of medium-bodied individuals. In addition, population biomass had a U-shaped curve response to removal pressure, implying that invasive fish populations can modulate their characteristics to compensate for the negative effects of selective removals. In addition, individual lengths at age 2 and juvenile growth rates decreased as removal pressure through angling increased, suggesting a shift toward an earlier size at maturity and an overall slower growing phenotype. Therefore, these outputs challenge the efficiency of selective management methods, suggesting the use of more proactive strategies to control invasive populations, and the need to investigate the potential ecological and evolutionary repercussions of nonrandom removal. PMID:26078856

  6. Impacts of invasive fish removal through angling on population characteristics and juvenile growth rate

    PubMed Central

    Evangelista, Charlotte; Britton, Robert J; Cucherousset, Julien

    2015-01-01

    Exploitation can modify the characteristics of fish populations through the selective harvesting of individuals, with this potentially leading to rapid ecological and evolutionary changes. Despite the well-known effects of invasive fishes on aquatic ecosystems generally, the potential effects of their selective removal through angling, a strategy commonly used to manage invasive fish, are poorly understood. The aim of this field-based study was to use the North American pumpkinseed Lepomis gibbosus as the model species to investigate the consequences of selective removal on their population characteristics and juvenile growth rates across 10 populations in artificial lakes in southern France. We found that the maximal individual mass in populations decreased as removal pressure through angling increased, whereas we did not observed any changes in the maximal individual length in populations as removal pressure increased. Total population abundance did not decrease as removal pressure increased; instead, here was a U-shaped relationship between removal pressure and the abundance of medium-bodied individuals. In addition, population biomass had a U-shaped curve response to removal pressure, implying that invasive fish populations can modulate their characteristics to compensate for the negative effects of selective removals. In addition, individual lengths at age 2 and juvenile growth rates decreased as removal pressure through angling increased, suggesting a shift toward an earlier size at maturity and an overall slower growing phenotype. Therefore, these outputs challenge the efficiency of selective management methods, suggesting the use of more proactive strategies to control invasive populations, and the need to investigate the potential ecological and evolutionary repercussions of nonrandom removal. PMID:26078856

  7. Patterns of connectivity among populations of a coral reef fish

    NASA Astrophysics Data System (ADS)

    Chittaro, P. M.; Hogan, J. D.

    2013-06-01

    Knowledge of the patterns and scale of connectivity among populations is essential for the effective management of species, but our understanding is still poor for marine species. We used otolith microchemistry of newly settled bicolor damselfish ( Stegastes partitus) in the Mesoamerican Reef System (MRS), Western Caribbean, to investigate patterns of connectivity among populations over 2 years. First, we assessed spatial and temporal variability in trace elemental concentrations from the otolith edge to make a `chemical map' of potential source reef(s) in the region. Significant otolith chemical differences were detected at three spatial scales (within-atoll, between-atolls, and region-wide), such that individuals were classified to locations with moderate (52 % jackknife classification) to high (99 %) accuracy. Most sites at Turneffe Atoll, Belize showed significant temporal variability in otolith concentrations on the scale of 1-2 months. Using a maximum likelihood approach, we estimated the natal source of larvae recruiting to reefs across the MRS by comparing `natal' chemical signatures from the otolith of recruits to the `chemical map' of potential source reef(s). Our results indicated that populations at both Turneffe Atoll and Banco Chinchorro supply a substantial amount of individuals to their own reefs (i.e., self-recruitment) and thus emphasize that marine conservation and management in the MRS region would benefit from localized management efforts as well as international cooperation.

  8. Evaluation of Midwater Trawl Selectivity and its Influence on Acoustic-Based Fish Population Surveys

    NASA Astrophysics Data System (ADS)

    Williams, Kresimir

    Trawls are used extensively during fisheries abundance surveys to derive estimates of fish density and, in the case of acoustic-based surveys, to identify acoustically sampled fish populations. However, trawls are selective in what fish they retain, resulting in biased estimates of density, species, and size compositions. Selectivity of the midwater trawl used in acoustic-based surveys of walleye pollock (Theragra chalcogramma) was evaluated using multiple methods. The effects of trawl selectivity on the acoustic-based survey abundance estimates and the stock assessment were evaluated for the Gulf of Alaska walleye pollock population. Selectivity was quantified using recapture, or pocket, nets attached to the outside of the trawl. Pocket net catches were modeled using a hierarchical Bayesian model to provide uncertainty in selectivity parameter estimates. Significant under-sampling of juvenile pollock by the midwater trawl was found, with lengths at 50% retention ranging from 14--26 cm over three experiments. Escapement was found to be light dependent, with more fish escaping in dark conditions. Highest escapement rates were observed in the aft of the trawl near to the codend though the bottom panel of the trawl. The behavioral mechanisms involved in the process of herding and escapement were evaluated using stereo-cameras, a DIDSON high frequency imaging sonar, and pocket nets. Fish maintained greater distances from the trawl panel during daylight, suggesting trawl modifications such as increased visibility of netting materials may evoke stronger herding responses and increased retention of fish. Selectivity and catchability of pollock by the midwater trawl was also investigated using acoustic density as an independent estimate of fish abundance to compare with trawl catches. A modeling framework was developed to evaluate potential explanatory factors for selectivity and catchability. Selectivity estimates were dependent on which vessel was used for the survey

  9. Prevalence and Population Structure of Vibrio vulnificus on Fishes from the Northern Gulf of Mexico

    PubMed Central

    Tao, Zhen; Larsen, Andrea M.; Bullard, Stephen A.; Wright, Anita C.

    2012-01-01

    The prevalence of Vibrio vulnificus on the external surfaces of fish from the northern Gulf of Mexico was determined in this study. A collection of 242 fish comprising 28 species was analyzed during the course of 12 sampling trips over a 16-month period. The prevalence of V. vulnificus was 37% but increased up to 69% in summer. A positive correlation was found between the percentages of V. vulnificus-positive fish and water temperatures, while salinity and V. vulnificus-positive fish prevalence were inversely correlated. A general lineal model (percent V. vulnificus-positive fish = 0.5930 − 0.02818 × salinity + 0.01406 × water temperature) was applied to best fit the data. Analysis of the population structure was carried out using 244 isolates recovered from fish. Ascription to 16S rRNA gene types indicated that 157 isolates were type A (62%), 72 (29%) were type B, and 22 (9%) were type AB. The percentage of type B isolates, considered to have greater virulence potential, was higher than that previously reported in oyster samples from the northern Gulf of Mexico. Amplified fragment length polymorphism (AFLP) was used to resolve the genetic diversity within the species. One hundred twenty-one unique AFLP profiles were found among all analyzed isolates, resulting in a calculated Simpson's index of diversity of 0.991. AFLP profiles were not grouped on the basis of collection date, fish species, temperature, or salinity, but isolates were clustered into two main groups that correlated precisely with 16S rRNA gene type. The population of V. vulnificus associated with fishes from the northern Gulf of Mexico is heterogeneous and includes strains of great virulence potential. PMID:22923394

  10. The Repopulation Potential of Hepatocyte Populations Differing in Size and Prior Mitotic Expansion

    PubMed Central

    Overturf, Ken; Al-Dhalimy, Muhsen; Finegold, Milton; Grompe, Markus

    1999-01-01

    Recently the stem cell-like regenerative potential of adult liver cells was demonstrated by serial transplantation. This repopulation capacity could be useful for the treatment of genetic liver diseases by cell transplantation and/or expansion of genetically manipulated cells. However, previous experiments used unfractionated populations of liver cells, and therefore it remained undetermined whether all hepatocytes or only a subpopulation (stem cells) possessed this high regenerative ability. To address this question we used centrifugal elutriation to separate hepatocytes by cell density. Unexpectedly, small hepatocytes (16 μm) had lower repopulation capacity during the first round of transplantation when compared with both the medium-sized (21 μm) and large (27 μm) cells. We also compared the repopulation capacity of hepatocytes that had undergone different degrees of in vivo expansion. Previous cell division neither reduced nor increased the repopulation capacity of transplanted liver cells. Finally, retroviral tagging experiments demonstrated that liver-repopulating cells occur at a frequency of >1:10,000. We conclude that short-term therapeutic liver repopulation does not require progenitor or stem cells. PMID:10595942

  11. Stabilization of population fluctuations due to cannibalism promotes resource polymorphism in fish.

    PubMed

    Andersson, Jens; Bystrom, Par; Claessen, David; Persson, Lennart; De Roos, Andre M

    2007-06-01

    Resource polymorphism is a well-known phenomenon in many taxa, assumed to be a consequence of strong competition for resources and to be facilitated by stable environments and the presence of several profitable resources on which to specialize. In fish, resource polymorphism, in the form of planktivore-benthivore pairs, is found in a number of species. We gathered literature data on life-history characteristics and population dynamics for 15 fish species and investigated factors related to the presence of such resource polymorphism. This investigation indicated that early cannibalism and low overall population variability are typically associated with the presence of resource polymorphism. These findings match previously reported patterns of population dynamics for size-structured fish populations, whereby early cannibalism has been shown to decrease temporal variation in population dynamics and to equalize the profitability of the zooplankton and macroinvertebrate resources. Our study suggests that competition alone is not a sufficient condition for the development of resource polymorphism because overly strong competition is typically associated with increased temporal variation (environmental instability). We conclude that although resource competition is an important factor regulating the development of resource polymorphism, cannibalism may also play a fundamental role by dampening population oscillations and possibly by equalizing the profitability of different resources. PMID:17479467

  12. Morphological Plasticity and Phylogeny in a Monogenean Parasite Transferring between Wild and Reared Fish Populations

    PubMed Central

    Mladineo, Ivona; Šegvić-Bubić, Tanja; Stanić, Rino; Desdevises, Yves

    2013-01-01

    It is widely accepted that disease interactions between cultured and wild fish occur repeatedly, although reported cases have mainly relied just on the observation of similar symptoms in affected populations. Whether there is an explicit pathogen transfer between fish stocks, or each develops its own pathogen population, has been insufficiently studied and rarely supported by molecular tools. In this study, we used population dynamics and genetic structure of the monogenean Furnestinia echeneis in reared and neighbouring wild sea bream to indicate pathogen transfer, characterized by the phenotypic plasticity of the parasite attachment apparatus and the lack of phylogenetic differentiation. The observed pattern of genetic variation inferred by nuclear DNA Internal Transcribed Spacer 1 (ITS1) and mtDNA cytochrome C oxidase 1 (COI), between parasite populations is most likely caused by a recent shared demographic history like a reduced species area in the last glacial period. In spite of such recent expansion that populations underwent, F. echeneis shows differentiation in haptor morphometry as an adaptive trait in closely related populations at the aquaculture site. This suggests that differentiation in morphology may occur relatively rapidly in this species and that adaptive forces, not the speciation process, drives this monogenean parasitation. On the other hand, the observed phylogenetic inertia suggests a low to moderate gene flow (based on FST) between parasites in cultured and wild fish, evidencing for the first time the transfer of pathogens at the aquaculture site inferred by a molecular tool. PMID:23620799

  13. Population persistence of stream fish in response to environmental change: integrating data and models across space

    NASA Astrophysics Data System (ADS)

    Letcher, B. H.; Schueller, P.; Bassar, R.; Coombs, J.; Rosner, A.; Sakrejda, K.; Kanno, Y.; Whiteley, A.; Nislow, K. H.

    2013-12-01

    For stream fishes, environmental variation is a key driver of individual body growth/movement/survival and, by extension, population dynamics. Identifying how stream fish respond to environmental variation can help clarify mechanisms responsible for population dynamics and can help provide tools to forecast relative resilience of populations across space. Forecasting dynamics across space is challenging, however, because it can be difficult to conduct enough studies with enough intensity to fully characterize broad-scale population response to environmental change. We have adopted a multi-scale approach, using detailed individual-based studies and analyses (integral projection matrix) to determine sensitivities of population growth to environmental variation combined with broad spatial data and analyses (occupancy and abundance models) to estimate patterns of population response across space. Population growth of brook trout was most sensitive to stream flow in the spring and winter, most sensitive to stream temperature in the fall and sensitive to both flow and temperature in the summer. High flow in the spring and winter had negative effects on population growth while high temperature had a negative effect in the fall. Flow had no effect when it was cold, but a positive effect when it was warm in the summer. Combined with occupancy and abundance models, these data give insight into the spatial structure of resilient populations and can help guide prioritization of management actions.

  14. Differences in male coloration are predicted by divergent sexual selection between populations of a cichlid fish.

    PubMed

    Selz, O M; Thommen, R; Pierotti, M E R; Anaya-Rojas, J M; Seehausen, O

    2016-05-11

    Female mating preferences can influence both intraspecific sexual selection and interspecific reproductive isolation, and have therefore been proposed to play a central role in speciation. Here, we investigate experimentally in the African cichlid fish Pundamilia nyererei if differences in male coloration between three para-allopatric populations (i.e. island populations with gene flow) of P. nyererei are predicted by differences in sexual selection by female mate choice between populations. Second, we investigate if female mating preferences are based on the same components of male coloration and go in the same direction when females choose among males of their own population, their own and other conspecific populations and a closely related para-allopatric sister-species, P. igneopinnis Mate-choice experiments revealed that females of the three populations mated species-assortatively, that populations varied in their extent of population-assortative mating and that females chose among males of their own population based on different male colours. Females of different populations exerted directional intrapopulation sexual selection on different male colours, and these differences corresponded in two of the populations to the observed differences in male coloration between the populations. Our results suggest that differences in male coloration between populations of P. nyererei can be explained by divergent sexual selection and that population-assortative mating may directly result from intrapopulation sexual selection. PMID:27147097

  15. COST AND BENEFITS OF ALTERED BENZO(A)PYRENE METABOLISM IN A PCB-ADAPTED FISH POPULATION

    EPA Science Inventory

    We examined populations of an estuarine fish species (Fundulus heteroclitus) resident to a highly contaminated site and a reference site for their ability to metabolize an important environmental pollutant. In previous work, we characterized the fish population resident to this h...

  16. Marine protected areas facilitate parasite populations among four fished host species of central Chile.

    PubMed

    Wood, Chelsea L; Micheli, Fiorenza; Fernández, Miriam; Gelcich, Stefan; Castilla, Juan Carlos; Carvajal, Juan

    2013-11-01

    1. Parasites comprise a substantial proportion of global biodiversity and exert important ecological influences on hosts, communities and ecosystems, but our knowledge of how parasite populations respond to human impacts is in its infancy. 2. Here, we present the results of a natural experiment in which we used a system of highly successful marine protected areas and matched open-access areas in central Chile to assess the influence of fishing-driven biodiversity loss on parasites of exploited fish and invertebrate hosts. We measured the burden of gill parasites for two reef fishes (Cheilodactylus variegatus and Aplodactylus punctatus), trematode parasites for a keyhole limpet (Fissurella latimarginata), and pinnotherid pea crab parasites for a sea urchin (Loxechinus albus). We also measured host density for all four hosts. 3. We found that nearly all parasite species exhibited substantially greater density (# parasites m(-2)) in protected than in open-access areas, but only one parasite species (a gill monogenean of C. variegatus) was more abundant within hosts collected from protected relative to open-access areas. 4. These data indicate that fishing can drive declines in parasite abundance at the parasite population level by reducing the availability of habitat and resources for parasites, but less commonly affects the abundance of parasites at the infrapopulation level (within individual hosts). 5. Considering the substantial ecological role that many parasites play in marine communities, fishing and other human impacts could exert cryptic but important effects on marine community structure and ecosystem functioning via reductions in parasite abundance. PMID:23855822

  17. Importance of the habitat choice behavior assumed when modeling the effects of food and temperature on fish populations

    USGS Publications Warehouse

    Wildhaber, M.L.; Lamberson, P.J.

    2004-01-01

    Various mechanisms of habitat choice in fishes based on food and/or temperature have been proposed: optimal foraging for food alone; behavioral thermoregulation for temperature alone; and behavioral energetics and discounted matching for food and temperature combined. Along with development of habitat choice mechanisms, there has been a major push to develop and apply to fish populations individual-based models that incorporate various forms of these mechanisms. However, it is not known how the wide variation in observed and hypothesized mechanisms of fish habitat choice could alter fish population predictions (e.g. growth, size distributions, etc.). We used spatially explicit, individual-based modeling to compare predicted fish populations using different submodels of patch choice behavior under various food and temperature distributions. We compared predicted growth, temperature experience, food consumption, and final spatial distribution using the different models. Our results demonstrated that the habitat choice mechanism assumed in fish population modeling simulations was critical to predictions of fish distribution and growth rates. Hence, resource managers who use modeling results to predict fish population trends should be very aware of and understand the underlying patch choice mechanisms used in their models to assure that those mechanisms correctly represent the fish populations being modeled.

  18. Trematode infection causes malformations and population effects in a declining New Zealand fish.

    PubMed

    Kelly, David W; Thomas, Harriet; Thieltges, David W; Poulin, Robert; Tompkins, Daniel M

    2010-03-01

    1. Animal malformations engender wide public and scientific concern because of associated environmental health risks. This is highlighted by increased incidence of limb malformations in amphibians associated with trematode infections and disturbance. Malformations may signal new emerging disease threats, but whether the phenomenon is broadly applicable across taxa, or has population-scale impacts, is unknown. 2. Malformations are widely reported in fish and, until now, have been attributed mainly to contaminants. We tested whether the trematode Telogaster opisthorchis caused severe malformations, leading to population effects, in Galaxias anomalus, a threatened New Zealand freshwater fish. 3. Experimental infection of larval fish caused increasing spinal malformation and mortality with infection intensity that closely matched field patterns. Field malformation frequency peaked in January (65%), before declining sharply in February (25%) and remaining low thereafter. 4. The peak occurred during a 'critical window' of larval development, with the decline coincident with a population crash, indicating that malformation was causing mortality in the field. 5. The occurrence of such critical developmental windows may explain why this mechanism of population impact has been overlooked. With global environmental stressors predicted to enhance trematode infections, our results show that parasite-induced malformation, and its population-scale impacts, could be more widespread than previously considered. PMID:19886894

  19. Ecological risk assessment in a large river-reservoir. 6: Bioindicators of fish population health

    SciTech Connect

    Adams, S.M.; Bevelhimer, M.S.; Greeley, M.S. Jr.; Levine, D.A.; Teh, S.J.

    1999-04-01

    Spatial distribution of contaminants in the sediments and biota of a large reservoir ecosystem were related to a variety of biological responses in fish populations and communities to determine possible relationships between contaminant loading in the environment and fish health. Much of the contaminant inventory in the Clinch River/Watts Bar Reservoir (CR/WBR) system has originated from three US Department of Energy facilities on the Oak Ridge Reservation, which borders this system in its upper reaches. Fish sampled from areas of the CR/WBR system with the highest levels of contaminants in the sediments and biota, primarily mercury and PCBs, had the most dramatic bioindicator responses. The major changes observed were induction of detoxification enzymes, organ dysfunction, increased frequency of histopathological lesions, impaired reproduction, and reduced fish community integrity. Mercury, the dominant contaminant, displayed a decreasing concentration gradient from the upper reaches of Poplar Creek to the lower Clinch River, which was consistent with a downstream gradient in several of the biological responses. A multivariate analysis using all of the individual fish health responses at each site in a discriminant analysis procedure also revealed a downstream gradient in integrated fish health. In Poplar Creek where contaminant concentrations were the highest, statistical correlations were observed between individual bioindicator responses such as contaminant exposure indicators, organ dysfunction, histopathological damage, and reproductive impairment. Relationships between contaminant loading and fish community indices such as species richness and relative abundance, however, were more difficult to establish in Poplar Creek because of the possible dominating influence of food and habitat availability on fish community dynamics. Using a suite of bioindicators that encompass a range of levels of biological organization and response-sensitivity scales improves the

  20. Overestimating Fish Counts by Non-Instantaneous Visual Censuses: Consequences for Population and Community Descriptions

    PubMed Central

    Ward-Paige, Christine; Mills Flemming, Joanna; Lotze, Heike K.

    2010-01-01

    Background Increasingly, underwater visual censuses (UVC) are used to assess fish populations. Several studies have demonstrated the effectiveness of protected areas for increasing fish abundance or provided insight into the natural abundance and structure of reef fish communities in remote areas. Recently, high apex predator densities (>100,000 individuals·km−2) and biomasses (>4 tonnes·ha−1) have been reported for some remote islands suggesting the occurrence of inverted trophic biomass pyramids. However, few studies have critically evaluated the methods used for sampling conspicuous and highly mobile fish such as sharks. Ideally, UVC are done instantaneously, however, researchers often count animals that enter the survey area after the survey has started, thus performing non-instantaneous UVC. Methodology/Principal Findings We developed a simulation model to evaluate counts obtained by divers deploying non-instantaneous belt-transect and stationary-point-count techniques. We assessed how fish speed and survey procedure (visibility, diver speed, survey time and dimensions) affect observed fish counts. Results indicate that the bias caused by fish speed alone is huge, while survey procedures had varying effects. Because the fastest fishes tend to be the largest, the bias would have significant implications on their biomass contribution. Therefore, caution is needed when describing abundance, biomass, and community structure based on non-instantaneous UVC, especially for highly mobile species such as sharks. Conclusions/Significance Based on our results, we urge that published literature state explicitly whether instantaneous counts were made and that survey procedures be accounted for when non-instantaneous counts are used. Using published density and biomass values of communities that include sharks we explore the effect of this bias and suggest that further investigation may be needed to determine pristine shark abundances and the existence of inverted

  1. Algal populations controlled by fish herbivory across a wave exposure gradient on southern temperate shores.

    PubMed

    Taylor, David I; Schiel, David R

    2010-01-01

    Consumers that forage across habitats can affect communities by altering the abundance and distribution of key species. In marine communities, studies of trophic interactions have generally focused on the effects of herbivorous and predatory invertebrates on benthic algae and mussel populations. However, large mobile consumers that move across habitats, such as fishes, can strongly affect community dynamics through consumption of habitat-dominating species, but their effects often vary over environmental gradients. On temperate rocky shores, herbivorous fishes are generally a small part of the fish fauna compared to the tropics, and there is sparse evidence that they play a major direct role in algal community dynamics, particularly of large brown algae that dominate many reefs. In New Zealand, however, a wide-ranging herbivorous fish, Odax pullus, feeds exclusively on macroalgae, including Durvillaea antarctica, a large low-intertidal fucoid reaching 10 m in length and 70 kg in mass. In four experiments we tested the extent of fish herbivory and how it was affected by algal canopy structure across a gradient of wave exposure at multiple sites. Exclusion experiments showed that fish impacts greatly reduced the cover and biomass of Durvillaea and that these effects decreased with increasing wave stress and algal canopy cover, effectively restricting the alga to exposed conditions. Almost all plants were entirely removed by fish where there was a sparse algal canopy in sheltered and semi-exposed sites, but there was significantly less grazing in exposed sites. Recruit Durvillaea beneath canopies were less affected by fish grazing, but they grew slowly. Successful natural recruitment, therefore, occurred almost exclusively on exposed shores outside canopies where many plants escaped severe grazing, and growth to maturity was far greater than elsewhere. Such large and direct impacts on the local and regional distribution of large brown algal populations by mobile

  2. Proxy Measures of Fitness Suggest Coastal Fish Farms Can Act as Population Sources and Not Ecological Traps for Wild Gadoid Fish

    PubMed Central

    Dempster, Tim; Sanchez-Jerez, Pablo; Fernandez-Jover, Damian; Bayle-Sempere, Just; Nilsen, Rune; Bjørn, Pal-Arne; Uglem, Ingebrigt

    2011-01-01

    Background Ecological traps form when artificial structures are added to natural habitats and induce mismatches between habitat preferences and fitness consequences. Their existence in terrestrial systems has been documented, yet little evidence suggests they occur in marine environments. Coastal fish farms are widespread artificial structures in coastal ecosystems and are highly attractive to wild fish. Methodology/Principal Findings To investigate if coastal salmon farms act as ecological traps for wild Atlantic cod (Gadus morhua) and saithe (Pollachius virens), we compared proxy measures of fitness between farm-associated fish and control fish caught distant from farms in nine locations throughout coastal Norway, the largest coastal fish farming industry in the world. Farms modified wild fish diets in both quality and quantity, thereby providing farm-associated wild fish with a strong trophic subsidy. This translated to greater somatic (saithe: 1.06–1.12 times; cod: 1.06–1.11 times) and liver condition indices (saithe: 1.4–1.8 times; cod: 2.0–2.8 times) than control fish caught distant from farms. Parasite loads of farm-associated wild fish were modified from control fish, with increased external and decreased internal parasites, however the strong effect of the trophic subsidy overrode any effects of altered loads upon condition. Conclusions and Significance Proxy measures of fitness provided no evidence that salmon farms function as ecological traps for wild fish. We suggest fish farms may act as population sources for wild fish, provided they are protected from fishing while resident at farms to allow their increased condition to manifest as greater reproductive output. PMID:21264217

  3. Populations of a cyprinid fish are self-sustaining despite widespread feminization of males

    PubMed Central

    2014-01-01

    Background Treated effluents from wastewater treatment works can comprise a large proportion of the flow of rivers in the developed world. Exposure to these effluents, or the steroidal estrogens they contain, feminizes wild male fish and can reduce their reproductive fitness. Long-term experimental exposures have resulted in skewed sex ratios, reproductive failures in breeding colonies, and population collapse. This suggests that environmental estrogens could threaten the sustainability of wild fish populations. Results Here we tested this hypothesis by examining population genetic structures and effective population sizes (Ne) of wild roach (Rutilus rutilus L.) living in English rivers contaminated with estrogenic effluents. Ne was estimated from DNA microsatellite genotypes using approximate Bayesian computation and sibling assignment methods. We found no significant negative correlation between Ne and the predicted estrogen exposure at 28 sample sites. Furthermore, examination of the population genetic structure of roach in the region showed that some populations have been confined to stretches of river with a high proportion of estrogenic effluent for multiple generations and have survived, apparently without reliance on immigration of fish from less polluted sites. Conclusions These results demonstrate that roach populations living in some effluent-contaminated river stretches, where feminization is widespread, are self-sustaining. Although we found no evidence to suggest that exposure to estrogenic effluents is a significant driving factor in determining the size of roach breeding populations, a reduction in Ne of up to 65% is still possible for the most contaminated sites because of the wide confidence intervals associated with the statistical model. PMID:24417977

  4. Connectivity, passability and heterogeneity interact to determine fish population persistence in river networks

    PubMed Central

    Samia, Yasmine; Lutscher, Frithjof; Hastings, Alan

    2015-01-01

    The movement of fish in watersheds is frequently inhibited by human-made migration barriers such as dams or culverts. The resulting lack of connectivity of spatial subpopulations is often cited as a cause for observed population decline. We formulate a matrix model for a spatially distributed fish population in a watershed, and we investigate how location and other characteristics of a single movement barrier impact the asymptotic growth rate of the population. We find that while population growth rate often decreases with the introduction of a movement obstacle, it may also increase due to a ‘retention effect’. Furthermore, obstacle mortality greatly affects population growth rate. In practice, different connectivity indices are used to predict population effects of migration barriers, but the relation of these indices to population growth rates in demographic models is often unclear. When comparing our results with the dentritic connectivity index, we see that the index captures neither the retention effect nor the influences of obstacle mortality. We argue that structural indices cannot entirely replace more detailed demographic models to understand questions of persistence and extinction. We advocate the development of novel functional indices and characteristics. PMID:26311313

  5. Connectivity, passability and heterogeneity interact to determine fish population persistence in river networks.

    PubMed

    Samia, Yasmine; Lutscher, Frithjof; Hastings, Alan

    2015-09-01

    The movement of fish in watersheds is frequently inhibited by human-made migration barriers such as dams or culverts. The resulting lack of connectivity of spatial subpopulations is often cited as a cause for observed population decline. We formulate a matrix model for a spatially distributed fish population in a watershed, and we investigate how location and other characteristics of a single movement barrier impact the asymptotic growth rate of the population. We find that while population growth rate often decreases with the introduction of a movement obstacle, it may also increase due to a 'retention effect'. Furthermore, obstacle mortality greatly affects population growth rate. In practice, different connectivity indices are used to predict population effects of migration barriers, but the relation of these indices to population growth rates in demographic models is often unclear. When comparing our results with the dentritic connectivity index, we see that the index captures neither the retention effect nor the influences of obstacle mortality. We argue that structural indices cannot entirely replace more detailed demographic models to understand questions of persistence and extinction. We advocate the development of novel functional indices and characteristics. PMID:26311313

  6. High population density enhances recruitment and survival of a harvested coral reef fish.

    PubMed

    Wormald, Clare L; Steele, Mark A; Forrester, Graham E

    2013-03-01

    A negative relationship between population growth and population density (direct density dependence) is necessary for population regulation and is assumed in most models of harvested populations. Experimental tests for density dependence are lacking for large-bodied, harvested fish because of the difficulty of manipulating population density over large areas. We studied a harvested coral reef fish, Lutjanus apodus (schoolmaster snapper), using eight large, isolated natural reefs (0.4-1.6 ha) in the Bahamas as replicates. An initial observational test for density dependence was followed by a manipulation of population density. The manipulation weakened an association between density and shelter-providing habitat features and revealed a positive effect of population density on recruitment and survival (inverse density dependence), but no effect of density on somatic growth. The snappers on an individual reef were organized into a few shoals, and we hypothesize that large shoals on high-density reefs were less vulnerable to large piscivores (groupers and barracudas) than the small shoals on low-density reefs. Reductions in predation risk for individuals in large social groups are well documented, but because snapper shoals occupied reefs the size of small marine reserves, these ecological interactions may influence the outcome of management actions. PMID:23634588

  7. Adaptive divergence between lake and stream populations of an East African cichlid fish.

    PubMed

    Theis, Anya; Ronco, Fabrizia; Indermaur, Adrian; Salzburger, Walter; Egger, Bernd

    2014-11-01

    Divergent natural selection acting in different habitats may build up barriers to gene flow and initiate speciation. This speciation continuum can range from weak or no divergence to strong genetic differentiation between populations. Here, we focus on the early phases of adaptive divergence in the East African cichlid fish Astatotilapia burtoni, which occurs in both Lake Tanganyika (LT) and inflowing rivers. We first assessed the population structure and morphological differences in A. burtoni from southern LT. We then focused on four lake-stream systems and quantified body shape, ecologically relevant traits (gill raker and lower pharyngeal jaw) as well as stomach contents. Our study revealed the presence of several divergent lake-stream populations that rest at different stages of the speciation continuum, but show the same morphological and ecological trajectories along the lake-stream gradient. Lake fish have higher bodies, a more superior mouth position, longer gill rakers and more slender pharyngeal jaws, and they show a plant/algae and zooplankton-biased diet, whereas stream fish feed more on snails, insects and plant seeds. A test for reproductive isolation between closely related lake and stream populations did not detect population-assortative mating. Analyses of F1 offspring reared under common garden conditions indicate that the detected differences in body shape and gill raker length do not constitute pure plastic responses to different environmental conditions, but also have a genetic basis. Taken together, the A. burtoni lake-stream system constitutes a new model to study the factors that enhance and constrain progress towards speciation in cichlid fishes. PMID:25256664

  8. Fish population size and movement patterns in a small intermittently open South African estuary

    NASA Astrophysics Data System (ADS)

    Lukey, J. R.; Booth, A. J.; Froneman, P. W.

    2006-03-01

    The population size and movement patterns of small fish (>50 mm SL) in a small intermittently open estuary (Grant's Valley estuary: 33°40'12.1″S, 26°42'12.6″E) situated on the south-east Cape coast of South Africa were examined during the closed phase over the period May and August 2004. The estuary was subdivided into four discrete areas and the fish within each area sampled using a 30 m seine net (15 mm mesh). Fish captured were marked by fin clipping according to the area of capture. Fish population size was estimated by using three methods: the Schnabel estimator, the Hilborn estimator, and a derived estimator. A total of 12 species was captured and marked during the study. The total number of fish in the estuary was estimated at ca. 12 000 individuals (11 219-13 311). Marine-breeding species ( Rhabdosargus holubi, Monodactylus falciformis, and two mullet species) numerically dominated the ichthyofauna, possibly as a result of their effective use of overtopping events, when seawater washes over the sandbar, to enter the estuary during the closed mouth phase. The two mullet species, Myxus capensis and Liza richardsonii, and the Cape stumpnose, R. holubi moved extensively throughout the estuary, while the remaining species exhibited restricted movement patterns possibly due to the preference for refuge and foraging areas associated with reed beds. The observed movement patterns of individual fish species appeared to be associated with both foraging behaviour and habitat selection.

  9. Population and biological parameters of selected fish species from the middle Xingu River, Amazon Basin.

    PubMed

    Camargo, M; Giarrizzo, T; Isaac, V J

    2015-08-01

    This study estimates the main biological parameters, including growth rates, asymptotic length, mortality, consumption by biomass, biological yield, and biomass, for the most abundant fish species found on the middle Xingu River, prior to the construction of the Belo Monte Dam. The specimens collected in experimental catches were analysed with empirical equations and length-based FISAT methods. For the 63 fish species studied, high growth rates (K) and high natural mortality (M) were related to early sexual maturation and low longevity. The predominance of species with short life cycles and a reduced number of age classes, determines high rates of stock turnover, which indicates high productivity for fisheries, and a low risk of overfishing. PMID:26691084

  10. Removal of nonnative fish results in population expansion of a declining amphibian (mountain yellow-legged frog, Rana muscosa).

    PubMed

    Knapp, Roland A; Boiano, Daniel M; Vredenburg, Vance T

    2007-02-01

    The mountain yellow-legged frog (Rana muscosa) was once a common inhabitant of the Sierra Nevada (California, USA), but has declined precipitously during the past century due in part to the introduction of nonnative fish into naturally fishless habitats. The objectives of the current study were to describe (1) the effect of fish removal from three lakes (located in two watersheds) on the small, remnant R. muscosa populations inhabiting those lakes, and (2) the initial development of metapopulation structure in each watershed as R. muscosa from expanding populations in fish-removal lakes dispersed to adjacent habitats. At all three fish-removal lakes, R. muscosa population densities increased significantly following the removal of predatory fish. The magnitude of these increases was significantly greater than that observed over the same time period in R. muscosa populations inhabiting control lakes that remained in their natural fishless condition. Following these population increases, R. muscosa dispersed to adjacent suitable (but unoccupied) sites, moving between 200 and 900 m along streams or across dry land. Together, these results suggest that large-scale removal of introduced fish could result in at least partial reversal of the decline of R. muscosa. Continued monitoring of R. muscosa at the fish-removal sites will be necessary to determine whether the positive effects of fish eradication are sustained over the long-term, especially in light of the increasingly important role played by an emerging infectious disease (chytridiomycosis, caused by Batrachochytrium dendrobatidis) in influencing R. muscosa populations. PMID:17396156

  11. Component population study of Acanthocephalus tumescens (Acanthocephala) in fishes from Lake Moreno, Argentina.

    PubMed

    Rauque, Carlos A; Viozzi, Gustavo P; Semenas, Liliana G

    2003-03-01

    Seasonal samples of all fish species from Lake Moreno were taken in order to determine the presence of paratenia, to evaluate the status of the hosts and to characterise the transmission of Acanthocephalus tumescens (von Linstow, 1896) at the component population level. Prevalence, mean abundance, mean intensity, numbers of gravid females, relative abundance of the different fish species, relative output of eggs and relative flow rates for each host species were computed. Acanthocephalus tumescens showed low host specificity, successfully parasitizing six out of eight fish species present in the lake. No paratenic infection was registered. If prevalence, mean abundance, and number of gravid females are considered, host species can be placed in a continuum from the most to least suitable as follows: Galaxias platei Steindachner, Diplomystes viedmensis (Mac Donagh), Oncorhynchus mykiss (Walbaum), Salvelinus fontinalis (Mitchill), Percichthys trucha (Cuvier et Valenciennes) and Galaxias maculatus (Jenyns). However, when parasite flow rates and egg output were calculated, including relative abundance of each fish species, the continuum was rearranged as follows: P. trucha, O. mykiss, G. platei / G. maculatus, S. fontinalis and D. viedmensis. The first four species would be the main contributors to the population of A. tumescens in this lake, P. trucha being the major one. Different regulatory and non-regulatory mechanisms are suggested. PMID:12735727

  12. EFFECTS OF BENZO[A]PYRENE EXPOSURE ON A FISH POPULATION RESISTANT TO THE TOXIC EFFECTS OF DIOXIN-LIKE COMPOUNDS

    EPA Science Inventory

    Effects of a model polycyclic aromatic hydrocarbon (PAH) were compared in populations of the estuarine fish Fundulus heteroclitus indigenous to a reference site and one highly contaminated with polychlorinated biphenyls (PCBs) and other compounds. The fish population resident to ...

  13. Scale of Severe Channel Disturbances Relative to the Structure of Fish Populations

    NASA Astrophysics Data System (ADS)

    Luce, C. H.; Rieman, B. E.; King, J. G.; Dunham, J. B.

    2002-12-01

    Stream temperature and channel disturbance are two potentially important controls on the distribution and persistence of fish populations. Temperature regulates primary physiological processes that constrain the demographic response of populations to their environments. Ultimately temperature may be a first order determinant of the patterns of potential habitat and occurrence for many species. Stream temperature can be estimated from locally derived empirical relationships with elevation or based on detailed energy balances and thus used to model the distribution of potential habitats for fishes across whole landscapes. The role of disturbance is more hypothetical. Metapopulation theory proposes that environmental variation may have an important influence on the dynamics of populations. Disturbances may depress or even eliminate local populations, but a regional population may persist because other populations are not affected. Demographic support or recolonization may occur through dispersal among populations. Clearly the scale of disturbance and population structure can be important. If the characteristic size of disturbances is larger than the extent of a local population, then adjacent populations may decline simultaneously and metapopulation structure will offer little benefit. Conversely, if the characteristic size is smaller the benefit of structure could be important. In this paper we examine the spatial scale of large disturbances in the Boise River catchment over the last 50 years. We compare that to the scale of habitat patches for bull trout defined by stream temperature and the patterns of genetic variation detected by molecular techniques. Implications for species conservation are discussed in the context of climate change (influencing habitat patch size) and fire and fuels management (influencing the scale of disturbance).

  14. A moving target--incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations.

    PubMed

    Cooke, Steven J; Martins, Eduardo G; Struthers, Daniel P; Gutowsky, Lee F G; Power, Michael; Doka, Susan E; Dettmers, John M; Crook, David A; Lucas, Martyn C; Holbrook, Christopher M; Krueger, Charles C

    2016-04-01

    Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions

  15. A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

    USGS Publications Warehouse

    Cooke, Steven J.; Martins, Eduardo G; Struthers, Daniel P; Gutowsky, Lee F G; Powers, Michael H.; Doka, Susan E; Dettmers, John M.; Crook, David A; Lucas, Martyn C.; Holbrook, Christopher; Krueger, Charles C.

    2016-01-01

    Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

  16. Higher freshwater fish and sea fish intake is inversely associated with colorectal cancer risk among Chinese population: a case-control study

    PubMed Central

    Xu, Ming; Fang, Yu-Jing; Chen, Yu-Ming; Lu, Min-Shan; Pan, Zhi-Zhong; Yan, Bo; Zhong, Xiao; Zhang, Cai-Xia

    2015-01-01

    The association between specific fish intake and colorectal cancer risk remains controversial. This study aimed to examine the association between specific fish intake and colorectal cancer risk in Chinese population in a large case control study. During July 2010 to November 2014, 1189 eligible colorectal cancer cases and 1189 frequency-matched controls (age and sex) completed in-person interviews. A validated food frequency questionnaire was used to estimate dietary intake. Multivariate logistical regression models were used to estimate the odds ratio (OR) and 95% confidence interval (95% CI) after adjusting for various confounders. A strong inverse association was found between freshwater fish intake and colorectal cancer risk. Compared with the lowest quartile, the highest quartile intake showed a risk reduction of 53% (OR 0.47, 95% CI = 0.36–0.60, Ptrend < 0.01) after adjustment for various confounders. The inverse association were also observed for sea fish (OR 0.79, 95%CI = 0.62–0.99, Ptrend < 0.01) and fresh fish (OR 0.49, 95%CI = 0.38–0.62, Ptrend < 0.01). No statistically significant association was found between dried/salted fish and shellfish intake and colorectal cancer risk. These results indicate that higher consumption of freshwater fish, sea fish and fresh fish is associated with a lower risk of colorectal caner. PMID:26264963

  17. Serum apolipoproteins in relation to intakes of fish in population of Arkhangelsk County

    PubMed Central

    2012-01-01

    Background Diets rich in omega-3 fatty acids and low in saturated fat were found beneficially associated with blood lipids and cardio-vascular health. Lean reindeer meet and local cold water white-fish species high in omega-3 are among the main sources of nutrients in the rural area of the Nenets Autonomous Okrug (NAO) in Russia and are not normally consumed by the urban population from the same region. The aims of the study were firstly, to compare serum lipid profiles of residents of urban (Arkhangelsk city) and rural (NAO) regions of Arkhangelsk County, and secondly, to investigate the effects of fish consumption on the predictor of cardiovascular events apolipoprotein (Apo) B/ApoA-I ratio in these populations. Methods A cross-sectional study conducted in Arkhangelsk County, Russia. Sample size of 249 adults: 132 subjects from Arkhangelsk city, aged 21–70 and 117 subject (87% Ethnic Nenets) from NAO, aged 18–69. Results We observed more favorable lipid levels in NAO compared to Arkhangelsk participants. Age-adjusted geometric means of ApoB/ApoA-I ratio were 1.02 and 0.98 in men and women from Arkhangelsk; 0.84 and 0.91 in men and women from NAO respectively. Age and consumption of animal fat were positively associated with ApoB/ApoA-I ratio in women (pooled samples from Arkhangelsk and NAO). Body mass index and low levels of physical activity were positively associated with ApoB/ApoA-I ratio in men (pooled samples from Arkhangelsk and NAO). Reported oily fish consumption was not significantly correlated with ApoB/ApoA-I ratio. Conclusion The population sample from rural NAO, consisting largely of the indigenous Arctic population Nenets with healthier dietary sources, had a relatively less atherogenic lipid profile compared to the urban Arkhangelsk group. Fish consumption had no effect on apolipoproteins profile. PMID:22681916

  18. Recruitment and post-recruit immigration affect the local population size of coral reef fishes

    NASA Astrophysics Data System (ADS)

    Lewis, A. R.

    1997-07-01

    This study quantifies the contributions of larval recruitment and post-recruit (juvenile and adult) immigration to net increases in population size for 150 species of fishes found on ten isolated coral patches or `bommies' (108-267 m2) within a typical reef of the Great Barrier Reef system. At least one third of the total number of recruits and immigrants to all bommies were post-recruit fishes, and movement between bommies in 136 species was detected at some time during the 22 month sampling period. The relative numbers of recruits and post-recruit immigrants per species varied widely within the assemblage, and between the replicate bommies. Populations of 95 species received both types of immigrants, 41 species had only post-recruit immigrants, and 14 species received only larval recruitment. In most species, recruitment occurred over the austral summer between October and February, while post-recruit movements occurred in both summer and winter. Rates of post-recruit immigration varied temporally within bommies, and pulses of post-recruits were less temporally concordant between bommies than pulses of recruits. This study is further evidence that post-settlement processes can have a significant effect on the local population size of reef fishes.

  19. Biomarkers in Natural Fish Populations Indicate Adverse Biological Effects of Offshore Oil Production

    PubMed Central

    Balk, Lennart; Hylland, Ketil; Hansson, Tomas; Berntssen, Marc H. G.; Beyer, Jonny; Jonsson, Grete; Melbye, Alf; Grung, Merete; Torstensen, Bente E.; Børseth, Jan Fredrik; Skarphedinsdottir, Halldora; Klungsøyr, Jarle

    2011-01-01

    Background Despite the growing awareness of the necessity of a sustainable development, the global economy continues to depend largely on the consumption of non-renewable energy resources. One such energy resource is fossil oil extracted from the seabed at offshore oil platforms. This type of oil production causes continuous environmental pollution from drilling waste, discharge of large amounts of produced water, and accidental spills. Methods and principal findings Samples from natural populations of haddock (Melanogrammus aeglefinus) and Atlantic cod (Gadus morhua) in two North Sea areas with extensive oil production were investigated. Exposure to and uptake of polycyclic aromatic hydrocarbons (PAHs) were demonstrated, and biomarker analyses revealed adverse biological effects, including induction of biotransformation enzymes, oxidative stress, altered fatty acid composition, and genotoxicity. Genotoxicity was reflected by a hepatic DNA adduct pattern typical for exposure to a mixture of PAHs. Control material was collected from a North Sea area without oil production and from remote Icelandic waters. The difference between the two control areas indicates significant background pollution in the North Sea. Conclusion It is most remarkable to obtain biomarker responses in natural fish populations in the open sea that are similar to the biomarker responses in fish from highly polluted areas close to a point source. Risk assessment of various threats to the marine fish populations in the North Sea, such as overfishing, global warming, and eutrophication, should also take into account the ecologically relevant impact of offshore oil production. PMID:21625421

  20. Life cycle ecophysiology of small pelagic fish and climate-driven changes in populations

    NASA Astrophysics Data System (ADS)

    Peck, Myron A.; Reglero, Patricia; Takahashi, Motomitsu; Catalán, Ignacio A.

    2013-09-01

    Due to their population characteristics and trophodynamic role, small pelagic fishes are excellent bio-indicators of climate-driven changes in marine systems world-wide. We argue that making robust projections of future changes in the productivity and distribution of small pelagics will require a cause-and-effect understanding of historical changes based upon physiological principles. Here, we reviewed the ecophysiology of small pelagic (clupeiform) fishes including a matrix of abiotic and biotic extrinsic factors (e.g., temperature, salinity, light, and prey characteristics) and stage-specific vital rates: (1) adult spawning, (2) survival and development of eggs and yolk sac larvae, and (3) feeding and growth of larvae, post-larvae and juveniles. Emphasis was placed on species inhabiting Northwest Pacific and Northeast Atlantic (European) waters for which summary papers are particularly scarce compared to anchovy and sardine in upwelling systems. Our review revealed that thermal niches (optimal and sub-optimal ranges in temperatures) were species- and stage-specific but that temperature effects only partly explained observed changes in the distribution and/or productivity of populations in the Northwest Pacific and Northeast Atlantic; changes in temperature may be necessary but not sufficient to induce population-level shifts. Prey availability during the late larval and early juvenile period was a common, density-dependent mechanism linked to fluctuations in populations but recruitment mechanisms were system-specific suggesting that generalizations of climate drivers across systems should be avoided. We identified gaps in knowledge regarding basic elements of the growth physiology of each life stage that will require additional field and laboratory study. Avenues of research are recommended that will aid the development of models that provide more robust, physiological-based projections of the population dynamics of these and other small pelagic fish. In our

  1. Genetic diversity affects the strength of population regulation in a marine fish.

    PubMed

    Johnson, D W; Freiwald, J; Bernardi, G

    2016-03-01

    Variation is an essential feature of biological populations, yet much of ecological theory treats individuals as though they are identical. This simplifying assumption is often justified by the perception that variation among individuals does not have significant effects on the dynamics of whole populations. However, this perception may be skewed by a historic focus on studying single populations. A true evaluation of the extent to which among-individual variation affects the dynamics of populations requires the study of multiple populations. In this study, we examined variation in the dynamics of populations of a live-bearing, marine fish (black surfperch; Embiotoca jacksoni). In collaboration with an organization of citizen scientists (Reef Check California), we were able to examine the dynamics of eight populations that were distributed throughout approximately 700 km of coastline, a distance that encompasses much of this species' range. We hypothesized that genetic variation within a local population would be related to the intensity of competition and to the strength of population regulation. To test this hypothesis, we examined whether genetic diversity (measured by the diversity of mitochondrial DNA haplotypes) was related to the strength of population regulation. Low-diversity populations experienced strong density dependence in population growth rates and population sizes were regulated much more tightly than they were in high-diversity populations. Mechanisms that contributed to this pattern include links between genetic diversity, habitat use, and spatial crowding. On average, low-diversity populations used less of the available habitat and exhibited greater spatial clustering (and more intense competition) for a given level of density (measured at the scale of the reef). Although the populations we studied also varied with respect to exogenous characteristics (habitat complexity, densities of predators, and interspecific competitors), none of these

  2. Contrasting Genetic Structure among Populations of Two Amphidromous Fish Species (Sicydiinae) in the Central West Pacific

    PubMed Central

    Taillebois, Laura; Castelin, Magalie; Ovenden, Jennifer R.; Bonillo, Céline; Keith, Philippe

    2013-01-01

    Both present-day and past processes can shape connectivity of populations. Pleistocene vicariant events and dispersal have shaped the present distribution and connectivity patterns of aquatic species in the Indo-Pacific region. In particular, the processes that have shaped distribution of amphidromous goby species still remain unknown. Previous studies show that phylogeographic breaks are observed between populations in the Indian and Pacific Oceans where the shallow Sunda shelf constituted a geographical barrier to dispersal, or that the large spans of open ocean that isolate the Hawaiian or Polynesian Islands are also barriers for amphidromous species even though they have great dispersal capacity. Here we assess past and present genetic structure of populations of two amphidromous fish (gobies of the Sicydiinae) that are widely distributed in the Central West Pacific and which have similar pelagic larval durations. We analysed sections of mitochondrial COI, Cytb and nuclear Rhodospine genes in individuals sampled from different locations across their entire known range. Similar to other Sicydiinae fish, intraspecific mtDNA genetic diversity was high for all species (haplotype diversity between 0.9–0.96). Spatial analyses of genetic variation in Sicyopus zosterophorum demonstrated strong isolation across the Torres Strait, which was a geologically intermittent land barrier linking Australia to Papua New Guinea. There was a clear genetic break between the northwestern and the southwestern clusters in Si. zosterophorum (φST = 0.67502 for COI) and coalescent analyses revealed that the two populations split at 306 Kyr BP (95% HPD 79–625 Kyr BP), which is consistent with a Pleistocene separation caused by the Torres Strait barrier. However, this geographical barrier did not seem to affect Sm. fehlmanni. Historical and demographic hypotheses are raised to explain the different patterns of population structure and distribution between these species. Strategies

  3. Contrasting genetic structure among populations of two amphidromous fish species (Sicydiinae) in the Central West Pacific.

    PubMed

    Taillebois, Laura; Castelin, Magalie; Ovenden, Jennifer R; Bonillo, Céline; Keith, Philippe

    2013-01-01

    Both present-day and past processes can shape connectivity of populations. Pleistocene vicariant events and dispersal have shaped the present distribution and connectivity patterns of aquatic species in the Indo-Pacific region. In particular, the processes that have shaped distribution of amphidromous goby species still remain unknown. Previous studies show that phylogeographic breaks are observed between populations in the Indian and Pacific Oceans where the shallow Sunda shelf constituted a geographical barrier to dispersal, or that the large spans of open ocean that isolate the Hawaiian or Polynesian Islands are also barriers for amphidromous species even though they have great dispersal capacity. Here we assess past and present genetic structure of populations of two amphidromous fish (gobies of the Sicydiinae) that are widely distributed in the Central West Pacific and which have similar pelagic larval durations. We analysed sections of mitochondrial COI, Cytb and nuclear Rhodospine genes in individuals sampled from different locations across their entire known range. Similar to other Sicydiinae fish, intraspecific mtDNA genetic diversity was high for all species (haplotype diversity between 0.9-0.96). Spatial analyses of genetic variation in Sicyopus zosterophorum demonstrated strong isolation across the Torres Strait, which was a geologically intermittent land barrier linking Australia to Papua New Guinea. There was a clear genetic break between the northwestern and the southwestern clusters in Si. zosterophorum (φST = 0.67502 for COI) and coalescent analyses revealed that the two populations split at 306 Kyr BP (95% HPD 79-625 Kyr BP), which is consistent with a Pleistocene separation caused by the Torres Strait barrier. However, this geographical barrier did not seem to affect Sm. fehlmanni. Historical and demographic hypotheses are raised to explain the different patterns of population structure and distribution between these species. Strategies

  4. Random forests, a novel approach for discrimination of fish populations using parasites as biological tags.

    PubMed

    Perdiguero-Alonso, Diana; Montero, Francisco E; Kostadinova, Aneta; Raga, Juan Antonio; Barrett, John

    2008-10-01

    Due to the complexity of host-parasite relationships, discrimination between fish populations using parasites as biological tags is difficult. This study introduces, to our knowledge for the first time, random forests (RF) as a new modelling technique in the application of parasite community data as biological markers for population assignment of fish. This novel approach is applied to a dataset with a complex structure comprising 763 parasite infracommunities in population samples of Atlantic cod, Gadus morhua, from the spawning/feeding areas in five regions in the North East Atlantic (Baltic, Celtic, Irish and North seas and Icelandic waters). The learning behaviour of RF is evaluated in comparison with two other algorithms applied to class assignment problems, the linear discriminant function analysis (LDA) and artificial neural networks (ANN). The three algorithms are used to develop predictive models applying three cross-validation procedures in a series of experiments (252 models in total). The comparative approach to RF, LDA and ANN algorithms applied to the same datasets demonstrates the competitive potential of RF for developing predictive models since RF exhibited better accuracy of prediction and outperformed LDA and ANN in the assignment of fish to their regions of sampling using parasite community data. The comparative analyses and the validation experiment with a 'blind' sample confirmed that RF models performed more effectively with a large and diverse training set and a large number of variables. The discrimination results obtained for a migratory fish species with largely overlapping parasite communities reflects the high potential of RF for developing predictive models using data that are both complex and noisy, and indicates that it is a promising tool for parasite tag studies. Our results suggest that parasite community data can be used successfully to discriminate individual cod from the five different regions of the North East Atlantic studied

  5. Framework for Evaluating Habitat Restoration Success with Respect to Fish Habitat- and Population-related Beneficial Use Impairments

    EPA Science Inventory

    A major challenge of evaluating restoration progress is establishing a cause-effect relationship between observed changes in fish abundance and ongoing aquatic habitat restoration. Since 1979, fish populations within the St. Louis River Area of Concern, which were severely degrad...

  6. Using Fish Population Metrics to Compare the Effects of Artificial Reef Density

    PubMed Central

    2015-01-01

    Artificial reefs continue to be added as habitat throughout the world, yet questions remain about how reef design affects fish diversity and abundance. In the present study, the effects of reef density were assessed for fish communities and sizes of economically valuable Lutjanus campechanus 13 km off Port Mansfield, Texas, at a reef composed of more than 4000 concrete culverts. The study spanned from May to June in 2013 and 2014, and sites sampled included natural reefs, bare areas, and varying culvert patch density categories, ranging from 1–190 culverts. Abundances of adults and species evenness of juvenile populations differed between the years. Fish communities did not significantly differ among density categories; however, highest species richness and total abundances were observed at intermediate culvert densities and at natural reefs. Whereas the abundance of L. campechanus did not differ among density categories, mean total lengths of L. campechanus were greatest at the lower density. Our findings suggest that reefs should be deployed with intermediate patch density of 71–120 culverts in a 30-m radius to yield the highest fish abundances. PMID:26422472

  7. Large scale, synchronous variability of marine fish populations driven by commercial exploitation.

    PubMed

    Frank, Kenneth T; Petrie, Brian; Leggett, William C; Boyce, Daniel G

    2016-07-19

    Synchronous variations in the abundance of geographically distinct marine fish populations are known to occur across spatial scales on the order of 1,000 km and greater. The prevailing assumption is that this large-scale coherent variability is a response to coupled atmosphere-ocean dynamics, commonly represented by climate indexes, such as the Atlantic Multidecadal Oscillation and North Atlantic Oscillation. On the other hand, it has been suggested that exploitation might contribute to this coherent variability. This possibility has been generally ignored or dismissed on the grounds that exploitation is unlikely to operate synchronously at such large spatial scales. Our analysis of adult fishing mortality and spawning stock biomass of 22 North Atlantic cod (Gadus morhua) stocks revealed that both the temporal and spatial scales in fishing mortality and spawning stock biomass were equivalent to those of the climate drivers. From these results, we conclude that greater consideration must be given to the potential of exploitation as a driving force behind broad, coherent variability of heavily exploited fish species. PMID:27382163

  8. Expansion of Dreissena into offshore waters of Lake Michigan and potential impacts on fish populations

    USGS Publications Warehouse

    Bunnell, D.B.; Madenjian, C.P.; Holuszko, J.D.; Adams, J.V.; French, J. R. P., III

    2009-01-01

    Lake Michigan was invaded by zebra mussels (Dreissena polymorpha) in the late 1980s and then followed by quagga mussels (D. bugensis) around 1997. Through 2000, both species (herein Dreissena) were largely restricted to depths less than 50??m. Herein, we provide results of an annual lake-wide bottom trawl survey in Lake Michigan that reveal the relative biomass and depth distribution of Dreissena between 1999 and 2007 (although biomass estimates from a bottom trawl are biased low). Lake-wide mean biomass density (g/m2) and mean depth of collection revealed no trend between 1999 and 2003 (mean = 0.7??g/m2 and 37??m, respectively). Between 2004 and 2007, however, mean lake-wide biomass density increased from 0.8??g/m2 to 7.0??g/m2, because of increased density at depths between 30 and 110??m, and mean depth of collection increased from 42 to 77??m. This pattern was confirmed by a generalized additive model. Coincident with the Dreissena expansion that occurred beginning in 2004, fish biomass density (generally planktivores) declined 71% between 2003 and 2007. Current understanding of fish population dynamics, however, indicates that Dreissena expansion is not the primary explanation for the decline of fish, and we provide a species-specific account for more likely underlying factors. Nonetheless, future sampling and research may reveal a better understanding of the potential negative interactions between Dreissena and fish in Lake Michigan and elsewhere.

  9. The Power to Detect Trends in Missouri River Fish Populations within the Pallid Sturgeon Population Assessment Program

    USGS Publications Warehouse

    Bryan, Janice L.; Wildhaber, Mark L.; Gladish, Dan; Holan, Scott; Ellerseick, Mark

    2010-01-01

    As with all large rivers in the United States, the Missouri River has been altered, with approximately 32.5 percent of the main stem length impounded and 32.5 percent channelized. These physical alterations to the environment have had effects on the fisheries, but studies examining the effects of alterations have been localized and for short periods of time. In response to the U.S. Fish and Wildlife Service biological opinion, the U.S. Army Corps of Engineers initiated monitoring of the fish community of the Missouri River in 2003. The goal of the Pallid Sturgeon Population Assessment Program is to provide information to detect changes in populations and habitat preferences with time for pallid sturgeon (Scaphirhynchus albus) and native target species in the Missouri River Basin. To determine statistical power of the Pallid Sturgeon Population Assessment Program, a power analysis was conducted using a normal linear mixed model with variance component estimates based on the first 3 years of data (2003 to 2005). In cases where 3 years of data were unavailable, estimates were obtained using those data. It was determined that at least 20 years of data, sampling 12 bends with 8 subsamples per bend, would be required to detect a 5 percent annual decline in most of the target fish populations. Power varied between Zones. Zone 1 (upstream from Lake Sakakawea) did not have any species/gear type combinations with adequate power, whereas Zone 3 (downstream from Gavins Point Dam) had 19 species/gear type combinations with adequate power. With a slight increase in the sampling effort to 12 subsamples per bend, the Pallid Sturgeon Population Assessment Program has adequate power to detect declines in shovelnose sturgeon (S. platorynchus) throughout the entire Missouri River because of large catch rates. The lowest level of non-occurrence (in other words, zero catches) at the bend level for pallid sturgeon was 0.58 using otter trawls in Zone 1. Consequently, the power of the

  10. STORED RETINOIDS IN POPULATIONS OF AN ESTUARINE FISH, FUNDULUS HETERCLITUS, INDIGENOUS TO PCB-CONTAMINATED AND REFERENCE SITES

    EPA Science Inventory

    Concentrations of retinoids, derivatives of vitamin A, were measured in populations of the nonmigratory estuarine fish Fundulus heteroclitus, indigenous to a reference site and a site highly contaminated with polychlorinated biphenyls (PCBs) to address the hypothesis that contami...

  11. POPULATION GENETIC STRUCTURE OF A NON-MIGRATORY MARINE FISH FUNDULUS HETERCLITUS ACROSS A STRONG GRADIENT OF PCB CONTAMINATION

    EPA Science Inventory

    Populations of the estuarine fish Fundulus heteroclitus indigenous to contaminated sites exhibit heritable resistance to some of the toxic effects of early life-stage exposure to polychlorinated biphenyls (PCBs). This evolved tolerance provides evidence of strong selection by PCB...

  12. Microgeographic population structure of green swordail fish: genetic differentiation despite abundant migration.

    PubMed

    Tatarenkov, A; Healey, C I M; Avise, J C

    2010-01-01

    Swordtails (Xiphophorus; Poeciliidae) have figured prominently in research on fish mating behaviours, sexual selection, and carcinogenesis, but their population structures and dispersal patterns have been relatively neglected. Using nine microsatellite loci, we estimated genetic differentiation in Xiphophorus helleri within and between adjacent streams in Belize. The genetic data were complemented by a tagging study of movement within one stream. In the absence of physical dispersal barriers (waterfalls), population structure followed an isolation by distance (IBD) pattern. Genetic differentiation (F(ST) up to 0.07) was significant between and within creeks, despite high dispersal in the latter as judged by the tagging data. Such heterogeneity apparently was a result of genetic drift in local demes, due to small population sizes and highly skewed paternity. The IBD pattern was interrupted by waterfalls, boosting F(ST) above 0.30 between adjacent samples across these barriers. Overall, our results are helpful in understanding the interplay of evolutionary forces and population dynamics in a small fish living in a changeable habitat. PMID:20015140

  13. Omics and Environmental Science Genomic Approaches With Natural Fish Populations From Polluted Environments

    PubMed Central

    Bozinovic, Goran; Oleksiak, Marjorie F.

    2010-01-01

    Transcriptomics and population genomics are two complementary genomic approaches that can be used to gain insight into pollutant effects in natural populations. Transcriptomics identify altered gene expression pathways while population genomics approaches more directly target the causative genomic polymorphisms. Neither approach is restricted to a pre-determined set of genes or loci. Instead, both approaches allow a broad overview of genomic processes. Transcriptomics and population genomic approaches have been used to explore genomic responses in populations of fish from polluted environments and have identified sets of candidate genes and loci that appear biologically important in response to pollution. Often differences in gene expression or loci between polluted and reference populations are not conserved among polluted populations suggesting a biological complexity that we do not yet fully understand. As genomic approaches become less expensive with the advent of new sequencing and genotyping technologies, they will be more widely used in complimentary studies. However, while these genomic approaches are immensely powerful for identifying candidate gene and loci, the challenge of determining biological mechanisms that link genotypes and phenotypes remains. PMID:21072843

  14. Successional change in the Lake Superior fish community: population trends in ciscoes, rainbow smelt, and lake trout, 1958-2008

    USGS Publications Warehouse

    Gorman, Owen T.

    2012-01-01

    The Lake Superior fish community underwent massive changes in the second half of the 20th century. Those changes are largely reflected in changes in abundance of the adults of principal prey species, the ciscoes (Coregonus spp.), the invasive rainbow smelt (Osmerus mordax), and the principal predator, lake trout (Salvelinus namaycush). To better understand changes in species abundances, a comprehensive series of gillnet and bottom trawl data collected from 1958 to 2008 were examined. In the late 1950s/early 1960s, smelt abundance was at its maximum, wild lake trout was at its minimum, and an abundance of hatchery lake trout was increasing rapidly. The bloater (Coregonus hoyi) was the prevalent cisco in the lake; abundance was more than 300% greater than the next most abundant cisco, shortjaw cisco (C. zenithicus), followed by kiyi (C. kiyi) and lake cisco (C. artedi). By the mid-1960s, abundance of hatchery lake trout was nearing maximum, smelt abundance was beginning to decline, and abundances of all ciscoes declined, but especially that of shortjaw cisco and kiyi. By the late 1970s, recovery of wild lake trout stocks was well underway and abundances of hatchery lake trout and smelt were declining and the ciscoes were reaching their nadir. During 1980–1990, the fish community underwent a dramatic shift in organization and structure. The rapid increase in abundance of wild lake trout, concurrent with a rapid decline in hatchery lake trout, signaled the impending recovery. Rainbow smelt abundance dropped precipitously and within four years, lake cisco and bloater populations rebounded on the heels of a series of strong recruitment events. Kiyi populations showed signs of recovery by 1989, and shortjaw by 2000, though well below historic maximum abundances. High abundance of adult smelt prior to 1980 appears to be the only factor linked to recruitment failure in the ciscoes. Life history traits of the cisco species were examined to better understand their different

  15. Discrimination of Astyanax altiparanae (Characiformes, Characidae) populations by applying Fourier transform-infrared photoacoustic spectroscopy in the fish scales

    NASA Astrophysics Data System (ADS)

    de Almeida, F. S.; Santana, C. A.; Lima, D. M. V.; Andrade, L. H. C.; Súarez, Y. R.; Lima, S. M.

    2016-05-01

    Astyanax altiparanae fish species is considered very generalist and opportunist, occupying different types and sizes of environments. This characteristic turns it very appropriate as bioindicator or biomarked. Therefore, in this work, A. altiparanae fish species was used to identify populations by using the Fourier transform infrared spectroscopy directly in its scales. The discriminant analysis applied in the infrared spectra demonstrated a significant differentiation among the analyzed populations, with the first and second canonical roots explain together 100% of the data variation. The obtained results were correlated with environmental descriptors and diet of fishes, and a better agreement was obtained when spectroscopic data were compared with the composition of food present in the fish stomachs. However, this study indicates that the combination of infrared absorption spectroscopy with discriminant analysis is a very appropriate methodology to be used in fish scales as bioindicator for intraspecific study.

  16. Native fishes in the Truckee River: Are in-stream structures and patterns of population genetic structure related?

    PubMed

    Peacock, Mary M; Gustin, Mae S; Kirchoff, Veronica S; Robinson, Morgan L; Hekkala, Evon; Pizzarro-Barraza, Claudia; Loux, Tim

    2016-09-01

    In-stream structures are recognized as significant impediments to movement for freshwater fishes. Apex predators such as salmonids have been the focus of much research on the impacts of such barriers to population dynamics and population viability however much less research has focused on native fishes, where in-stream structures may have a greater impact on long term population viability of these smaller, less mobile species. Patterns of genetic structure on a riverscape can provide information on which structures represent real barriers to movement for fish species and under what specific flow conditions. Here we characterize the impact of 41 dam and diversion structures on movement dynamics under varying flow conditions for a suite of six native fishes found in the Truckee River of California and Nevada. Microsatellite loci were used to estimate total allelic diversity, effective population size and assess genetic population structure. Although there is spatial overlap among species within the river there are clear differences in species distributions within the watershed. Observed population genetic structure was associated with in-stream structures, but only under low flow conditions. High total discharge in 2006 allowed fish to move over potential barriers resulting in no observed population genetic structure for any species in 2007. The efficacy of in-stream structures to impede movement and isolate fish emerged only after multiple years of low flow conditions. Our results suggest that restricted movement of fish species, as a result of in-stream barriers, can be mitigated by flow management. However, as flow dynamics are likely to be altered under global climate change, fragmentation due to barriers could isolate stream fishes into small subpopulations susceptible to both demographic losses and losses of genetic variation. PMID:27135585

  17. Can remote high-resolution mapping help individual-based fish population models go up-scale? (Invited)

    NASA Astrophysics Data System (ADS)

    Harvey, B.; Railsback, S.

    2009-12-01

    Spatially explicit, individual-based models of fish populations show great promise for linking physical conditions and processes to population dynamics. The ability to link physical processes and population outcomes is critical for optimizing habitat restoration efforts, forecasting the consequences of climate change, evaluating flow regimes, and other activities necessary to sustain at-risk fish populations. Because individual-based models simulate habitat from the perspective of individual fish, they commonly capture variation in physical habitat on a scale of 1- 50 square meters and rely on simulations (including hydraulic modeling) at the reach scale (0.2 to 1 km). Simulated reaches can be linked in some models such that virtual fish can move among them. The significance of the size, location and arrangement of reaches included in IBM simulations of fish populations has not been investigated in detail. However, the process of reach selection clearly benefits from information on channel physical conditions at the network scale, so that reaches can be selected to well-represent the diversity of habitat at larger spatial scales. High-resolution mapping of channel topography would be a richer source of network-scale information than others used to date, such as habitat typing and simple video. Remote, high-resolution mapping data might also provide a major step forward in the capability of individual-based models to address fish population dynamics at the network scale if the mapping data could be directly used for hydraulic simulations. Challenges for this step include the need to estimate physical habitat variables included in individual-based models that may not be readily discernable from topographic data, such as the availability of cover for fish. Exploring the use of high-resolution mapping data in individual-based modeling of fish populations seems worth doing, in that the individual-based models should be a particularly effective way to derive biological

  18. Predators inhibit brain cell proliferation in natural populations of electric fish, Brachyhypopomus occidentalis.

    PubMed

    Dunlap, Kent D; Tran, Alex; Ragazzi, Michael A; Krahe, Rüdiger; Salazar, Vielka L

    2016-02-10

    Compared with laboratory environments, complex natural environments promote brain cell proliferation and neurogenesis. Predators are one important feature of many natural environments, but, in the laboratory, predatory stimuli tend to inhibit brain cell proliferation. Often, laboratory predatory stimuli also elevate plasma glucocorticoids, which can then reduce brain cell proliferation. However, it is unknown how natural predators affect cell proliferation or whether glucocorticoids mediate the neurogenic response to natural predators. We examined brain cell proliferation in six populations of the electric fish, Brachyhypopomus occidentalis, exposed to three forms of predator stimuli: (i) natural variation in the density of predatory catfish; (ii) tail injury, presumably from predation attempts; and (iii) the acute stress of capture. Populations with higher predation pressure had lower density of proliferating (PCNA+) cells, and fish with injured tails had lower proliferating cell density than those with intact tails. However, plasma cortisol did not vary at the population level according to predation pressure or at the individual level according to tail injury. Capture stress significantly increased cortisol, but only marginally decreased cell proliferation. Thus, it appears that the presence of natural predators inhibits brain cell proliferation, but not via mechanisms that depend on changes in basal cortisol levels. This study is the first demonstration of predator-induced alteration of brain cell proliferation in a free-living vertebrate. PMID:26842566

  19. Life-history correlates of maximum population growth rates in marine fishes.

    PubMed Central

    Denney, Nicola H; Jennings, Simon; Reynolds, John D

    2002-01-01

    Theory predicts that populations of animals with late maturity, low fecundity, large body size and low body growth rates will have low potential rates of population increase at low abundance. If this is true, then these traits may be used to predict the intrinsic rate of increase for species or populations, as well as extinction risks. We used life-history and population data for 63 stocks of commercially exploited fish species from the northeast Atlantic to test relationships between life-history parameters and the rate of population increase at low abundance. We used cross-taxonomic analyses among stocks and among species, and analyses that accounted for phylogenetic relationships. These analyses confirmed that large-bodied, slow-growing stocks and species had significantly lower rates of recruitment and adult production per spawning adult at low abundance. Furthermore, high ages at maturity were significantly correlated with low maximum recruit production. Contrary to expectation, fecundity was significantly negatively related to recruit production, due to its positive relationship with maximum body size. Our results support theoretical predictions, and suggest that a simply measured life-history parameter can provide a useful tool for predicting rates of recovery from low population abundance. PMID:12427316

  20. Visual Basic, Excel-based fish population modeling tool—The pallid sturgeon example

    USGS Publications Warehouse

    Moran, Edward H.; Wildhaber, Mark L.; Green, Nicholas S.; Albers, Janice L.

    2016-01-01

    The model presented in this report is a spreadsheet-based model using Visual Basic for Applications within Microsoft Excel (http://dx.doi.org/10.5066/F7057D0Z) prepared in cooperation with the U.S. Army Corps of Engineers and U.S. Fish and Wildlife Service. It uses the same model structure and, initially, parameters as used by Wildhaber and others (2015) for pallid sturgeon. The difference between the model structure used for this report and that used by Wildhaber and others (2015) is that variance is not partitioned. For the model of this report, all variance is applied at the iteration and time-step levels of the model. Wildhaber and others (2015) partition variance into parameter variance (uncertainty about the value of a parameter itself) applied at the iteration level and temporal variance (uncertainty caused by random environmental fluctuations with time) applied at the time-step level. They included implicit individual variance (uncertainty caused by differences between individuals) within the time-step level.The interface developed for the model of this report is designed to allow the user the flexibility to change population model structure and parameter values and uncertainty separately for every component of the model. This flexibility makes the modeling tool potentially applicable to any fish species; however, the flexibility inherent in this modeling tool makes it possible for the user to obtain spurious outputs. The value and reliability of the model outputs are only as good as the model inputs. Using this modeling tool with improper or inaccurate parameter values, or for species for which the structure of the model is inappropriate, could lead to untenable management decisions. By facilitating fish population modeling, this modeling tool allows the user to evaluate a range of management options and implications. The goal of this modeling tool is to be a user-friendly modeling tool for developing fish population models useful to natural resource

  1. Does mobility explain variation in colonisation and population recovery among stream fishes?

    USGS Publications Warehouse

    Angermeier, Paul L.; Albanese, Brett; Peterson, James T.

    2009-01-01

    1. Colonisation and population recovery are crucial to species persistence in environmentally variable ecosystems, but are poorly understood processes. After documenting movement rates for several species of stream fish, we predicted that this variable would influence colonisation rates more strongly than local abundance, per cent occupancy, body size and taxonomic family. We also predicted that populations of species with higher movement rates would recover more rapidly than species with lower movement rates and that assemblage structure would change accordingly. 2. To test these predictions, we removed fishes from a headwater and a mainstem creek in southwest Virginia and monitored colonisation over a 2-year period. Using an information–theoretic approach, we evaluated the relative plausibility of 15 alternative models containing different combinations of our predictor variables. Our best-supported model contained movement rate and abundance and was 41 times more likely to account for observed patterns in colonisation rates than the next-best model. Movement rate and abundance were both positively related to colonisation rates and explained 88% of the variation in colonisation rates among species. 3. Population recovery, measured as the per cent of initial abundance restored, was also positively associated with movement rate. One species recovered within 3 months, most recovered within 2 years, but two species still had not recovered after 2 years. Despite high variation in recovery, the removal had only a slight impact on assemblage structure because species that were abundant in pre-removal samples were also abundant in post-removal samples. 4. The significance of interspecific variation in colonisation and recovery rates has been underappreciated because of the widely documented recovery of stream fish assemblages following fish kills and small-scale experimental defaunations. Our results indicate that recovery of the overall assemblage does not imply

  2. Genetic structuring among silverside fish (Atherinella brasiliensis) populations from different Brazilian regions

    NASA Astrophysics Data System (ADS)

    da Silva Cortinhas, Maria Cristina; Kersanach, Ralf; Proietti, Maíra; Dumont, Luiz Felipe Cestari; D'Incao, Fernando; Lacerda, Ana Luzia F.; Prata, Pedro Sanmartin; Matoso, Daniele Aparecida; Noleto, Rafael Bueno; Ramsdorf, Wanessa; Boni, Talge Aiex; Prioli, Alberto José; Cestari, Marta Margarete

    2016-09-01

    Estuaries are dynamic environments, key for the survival of innumerous ecologically or economically important fish species. Among these species are Neotropical silversides (Atherinella brasiliensis), which are resident and abundant in Brazilian estuaries and used as a complementary source of income and food for local communities. To better understand silverside populations in Brazil, we evaluated the genetic diversity, structure and demography of fish sampled at six estuaries from the northeastern to the southern coast, using Random Amplified Polymorphic DNA and mitochondrial DNA (D-loop) markers. High haplotype diversities (h ranging from 0.75 to 0.99) were found in all populations except Carapebus, located in Southeast Brazil (h = 0.54). A total of 69 mtDNA haplotypes were found, with Itaparica (Northeast Brazil) and Carapebus presenting only exclusive haplotypes, while some were shared among populations in the South. Strong regional structure was observed, with very high differentiation between Itaparica and Carapebus, as well as among these two populations and the ones from the Southern region (Paranaguá, Conceição, Camacho and Patos). Among southern areas, low/moderate structure was detected. Most populations showed unimodal mismatch distributions indicating recent demographic expansion, while Carapebus presented a multimodal distribution characteristic of a stable or bottlenecked population. Times since possible population expansion were highest in Itaparica (32,500 ya) and Carapebus (29,540 ya), while in the Southern region longest time was observed at Conceição (25,540 ya) and shortest at Patos (9720 ya). In a general manner, haplotype diversities were directly related to times since population expansions; again, Carapebus was the exception, displaying long time since expansion but low diversity, possibly due to a recent bottleneck caused by the isolation and human impacts this lagoon is subject to. Isolation by Distance was significant for Itaparica

  3. Bistability in a size-structured population model of cannibalistic fish--a continuation study.

    PubMed

    Claessen, David; de Roos, André M

    2003-08-01

    By numerical continuation of equilibria, we study a size-structured model for the dynamics of a cannibalistic fish population and its alternative resource. Because we model the cannibalistic interaction as dependent on the ratio of cannibal length and victim length, a cannibal experiences a size distribution of potential victims which depends on its own body size. We show how equilibria of the resulting infinite-dimensional dynamical system can be traced with an existing method for numerical continuation for physiologically structured population models. With this approach we found that cannibalism can induce bistability associated with a fold (or, saddle-node) bifurcation. The two stable states can be qualified as 'stunted' and 'piscivorous', respectively. We identify a new ecological mechanism for bistability, in which the energy gain from cannibalism plays a crucial role: Whereas in the stunted population state cannibals consume their victims, on average, while they are very small and yield little energy, in the piscivorous state cannibals consume their victims not before they have become much bigger, which results in a much higher mean yield of cannibalism. We refer to this mechanism as the 'Hansel and Gretel' effect. It is not related to any individual 'choice' or 'strategy', but depends purely on a difference in population size distribution. We argue that studying dynamics of size-structured population models with this new approach of equilibrium continuation extends the insight that can be gleaned from numerical simulations of the model dynamics. PMID:12804871

  4. The impact of United States recreational fisheries on marine fish populations.

    PubMed

    Coleman, Felicia C; Figueira, Will F; Ueland, Jeffrey S; Crowder, Larry B

    2004-09-24

    We evaluated the commercial and recreational fishery landings over the past 22 years, first at the national level, then for populations of concern (those that are overfished or experiencing overfishing), and finally by region. Recreational landings in 2002 account for 4% of total marine fish landed in the United States. With large industrial fisheries excluded (e.g., menhaden and pollock), the recreational component rises to 10%. Among populations of concern, recreational landings in 2002 account for 23% of the total nationwide, rising to 38% in the South Atlantic and 64% in the Gulf of Mexico. Moreover, it affects many of the most-valued overfished species-including red drum, bocaccio, and red snapper-all of which are taken primarily in the recreational fishery. PMID:15331771

  5. Impact of entrainment and impingement on fish populations in the Hudson River estuary. Volume I. Entrainment-impact estimates for six fish populations inhabiting the Hudson River estuary

    SciTech Connect

    Boreman, J.; Barnthouse, L.W.; Vaughn, D.S.; Goodyear, C.P.; Christensen, S.W.; Kumar, K.D.; Kirk, B.L.; Van Winkle, W.

    1982-01-01

    This volume is concerned with the estimation of the direct (or annual) entrainment impact of power plants on populations of striped bass, white perch, Alosa spp. (blueback herring and alewife), American shad, Atlantic tomcod, and bay anchovy in the Hudson River estuary. Entrainment impact results from the killing of fish eggs, larvae, and young juveniles that are contained in the cooling water cycled through a power plant. An Empirical Transport Model (ETM) is presented as the means of estimating a conditional entrainment mortality rate (defined as the fraction of a year class which would be killed due to entrainment in the absence of any other source of mortality). Most of this volume is concerned with the estimation of several parameters required by the ETM: physical input parameters (e.g., power-plant withdrawal flow rates); the longitudinal distribution of ichthyoplankton in time and space; the duration of susceptibility of the vulnerable organisms; the W-factors, which express the ratios of densities of organisms in power plant intakes to densities of organisms in the river; and the entrainment mortality factors (f-factors), which express the probability that an organism will be killed if it is entrained. Once these values are obtained, the ETM is used to estimate entrainment impact for both historical and projected conditions.

  6. Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges

    NASA Astrophysics Data System (ADS)

    Jones, G. P.; Almany, G. R.; Russ, G. R.; Sale, P. F.; Steneck, R. S.; van Oppen, M. J. H.; Willis, B. L.

    2009-06-01

    The extent of larval dispersal on coral reefs has important implications for the persistence of coral reef metapopulations, their resilience and recovery from an increasing array of threats, and the success of protective measures. This article highlights a recent dramatic increase in research effort and a growing diversity of approaches to the study of larval retention within (self-recruitment) and dispersal among (connectivity) isolated coral reef populations. Historically, researchers were motivated by alternative hypotheses concerning the processes limiting populations and structuring coral reef assemblages, whereas the recent impetus has come largely from the need to incorporate dispersal information into the design of no-take marine protected area (MPA) networks. Although the majority of studies continue to rely on population genetic approaches to make inferences about dispersal, a wide range of techniques are now being employed, from small-scale larval tagging and paternity analyses, to large-scale biophysical circulation models. Multiple approaches are increasingly being applied to cross-validate and provide more realistic estimates of larval dispersal. The vast majority of empirical studies have focused on corals and fishes, where evidence for both extremely local scale patterns of self-recruitment and ecologically significant connectivity among reefs at scales of tens of kilometers (and in some cases hundreds of kilometers) is accumulating. Levels of larval retention and the spatial extent of connectivity in both corals and fishes appear to be largely independent of larval duration or reef size, but may be strongly influenced by geographic setting. It is argued that high levels of both self-recruitment and larval import can contribute to the resilience of reef populations and MPA networks, but these benefits will erode in degrading reef environments.

  7. CREATION OF A GEOGRAPHIC INFORMATION SYSTEM TO IDENTIFY AT-RISK POPULATIONS IN NEW JERSEY AND NEW YORK FOR CONSUMPTION OF CONTAMINATED FISH AND SEAFOOD

    EPA Science Inventory

    Project Objective: To identify at-risk populations, particularly women of child bearing years and young children, for consumption of contaminated fish and seafood via the use of geographically and demographically defined seafood consumption patterns and fish/seafood contaminatio...

  8. Effects of metal contamination from mine tailings on allozyme distributions of populations of Great Plains fishes

    SciTech Connect

    Brown, K.; Roark, S.

    1995-12-31

    This study was conducted to assess the effects of zinc and lead on genetic variability of minnow populations (Gambusia affinis, Pimephales notatus, and Fundulus notatus) sampled from two creeks, one receiving mine drainage (Willow Creek) and one reference (Brush Creek), in the Tri-State Mining district in Kansas. Zinc and lead concentrations were greater in water samples taken from sites in Willow Creek compared to sites sampled in Brush Creek. While total numbers of fish captured from Willow Creek were smaller than numbers taken from Brush Creek, there were no differences in these fish communities for estimates of species diversity, richness and evenness. Genetic differentiation within creeks was rare. However, there was significant differentiation between creeks for allozymes of the enzymes glucose phosphate isomerase (GPI) in F. notatus and P. notatus, malate dehydrogenase (MDH) in G. affinis, and phosphogluconate dehydrogenase (PGDH) in F. notatus. Proportions of heterozygous genotypes of P. notatus and G. affinis were higher in Willow Creek compared to Brush Creek. In vitro experiments were conducted to assess the effects of zinc and lead on sensitivity of enzyme staining during electrophoresis. Results indicated allozyme sensitivity to zinc for GPI and PGDH loci. Other studies suggest that zinc competitively competes with magnesium as a cofactor for these enzymes. Allozymes did not exhibit differential sensitivity to lead. The significant differentiation between creek populations and the results of the in vitro tests indicate a selective effect of zinc on allozymic distributions of these fishes. These results demonstrate the potential use of genetic variability as a bioindicator of heavy metal contamination.

  9. Effects of metal contamination from mine tailings on allozyme distributions of populations of Great Plains fishes

    SciTech Connect

    Roark, S.; Brown, K.

    1996-06-01

    This study was conducted to assess the effects of zinc and lead on genetic variability of minnow populations (Gambusia affinis, Pimephales notatus, and Fundulus notatus) sampled from two creeks, one receiving mine drainage (Willow Creek) and one reference (Brush Creek), in the Tri-State Mining District in Kansas. Zinc and lead concentrations were greater in water samples taken from sites in Willow Creek compared to sites sampled in Brush Creek. Although total numbers of fish captured from Willow Creek were smaller than numbers taken from Brush Creek, there were no differences in these fish communities for estimates of species diversity, richness, and evenness. Genetic differentiation within creeks was rare. However, there was significant differentiation between creeks for allozymes of the enzymes glucose phosphate isomerase (Gpi) in F. notatus and P. notatus, malate dehydrogenase (Mdh) in G. affinis, and phosphogluconate dehydrogenase (Pgdh) in F. notatus. Proportions of heterozygous genotypes of P. notatus and G. affinis were higher in Willow Creek compared to Brush Creek. In vitro experiments were conducted to assess the effects of zinc and lead on sensitivity of enzyme staining during electrophoresis. Results indicated allozyme sensitivity to zinc for Gpi and Pgdh loci, but not for products of the Mdh locus. No sensitivity to lead was noted for allozymes. The significant differentiation between creek populations and the results of the in vitro tests indicate a selective effect of zinc on allozymic distributions of these fishes. These results provide additional support for the use of genetic structure and variability as a bioindicator of heavy metal contamination.

  10. Disruptive sexual selection on male nuptial coloration in an experimental hybrid population of cichlid fish.

    PubMed

    Stelkens, Rike B; Pierotti, Michele E R; Joyce, Domino A; Smith, Alan M; van der Sluijs, Inke; Seehausen, Ole

    2008-09-12

    Theory suggests that genetic polymorphisms in female mating preferences may cause disruptive selection on male traits, facilitating phenotypic differentiation despite gene flow, as in reinforcement or other models of speciation with gene flow. Very little experimental data have been published to test the assumptions regarding the genetics of mate choice that such theory relies on. We generated a population segregating for female mating preferences and male colour dissociated from other species differences by breeding hybrids between species of the cichlid fish genus Pundamilia. We measured male mating success as a function of male colour. First, we demonstrate that non-hybrid females of both species use male nuptial coloration for choosing mates, but with inversed preferences. Second, we show that variation in female mating preferences in an F2 hybrid population generates a quadratic fitness function for male coloration suggestive of disruptive selection: intermediate males obtained fewer matings than males at either extreme of the colour range. If the genetics of female mate choice in Pundamilia are representative for those in other species of Lake Victoria cichlid fish, it may help explain the origin and maintenance of phenotypic diversity despite some gene flow. PMID:18522918

  11. Population genomics of local adaptation versus speciation in coral reef fishes (Hypoplectrus spp, Serranidae).

    PubMed

    Picq, Sophie; McMillan, W Owen; Puebla, Oscar

    2016-04-01

    Are the population genomic patterns underlying local adaptation and the early stages of speciation similar? Addressing this question requires a system in which (i) local adaptation and the early stages of speciation can be clearly identified and distinguished, (ii) the amount of genetic divergence driven by the two processes is similar, and (iii) comparisons can be repeated both taxonomically (for local adaptation) and geographically (for speciation). Here, we report just such a situation in the hamlets (Hypoplectrus spp), brightly colored reef fishes from the wider Caribbean. Close to 100,000 SNPs genotyped in 126 individuals from three sympatric species sampled in three repeated populations provide genome-wide levels of divergence that are comparable among allopatric populations (F st estimate = 0.0042) and sympatric species (F st estimate = 0.0038). Population genetic, clustering, and phylogenetic analyses reveal very similar patterns for local adaptation and speciation, with a large fraction of the genome undifferentiated (F st estimate ≈ 0), a very small proportion of F st outlier loci (0.05-0.07%), and remarkably few repeated outliers (1-3). Nevertheless, different loci appear to be involved in the two processes in Hypoplectrus, with only 7% of the most differentiated SNPs and outliers shared between populations and species comparisons. In particular, a tropomyosin (Tpm4) and a previously identified hox (HoxCa) locus emerge as candidate loci (repeated outliers) for local adaptation and speciation, respectively. We conclude that marine populations may be locally adapted notwithstanding shallow levels of genetic divergence, and that from a population genomic perspective, this process does not appear to differ fundamentally from the early stages of speciation. PMID:27099711

  12. Characterization of fish assemblages and population structure of freshwater fish in two Tunisian reservoirs: implications for fishery management.

    PubMed

    Mili, Sami; Ennouri, Rym; Dhib, Amel; Laouar, Houcine; Missaoui, Hechmi; Aleya, Lotfi

    2016-06-01

    To monitor and assess the state of Tunisian freshwater fisheries, two surveys were undertaken at Ghezala and Lahjar reservoirs. Samples were taken in April and May 2013, a period when the fish catchability is high. The selected reservoirs have different surface areas and bathymetries. Using multi-mesh gill nets (EN 14575 amended) designed for sampling fish in lakes, standard fishing methods were applied to estimate species composition, abundance, biomass, and size distribution. Four species were caught in the two reservoirs: barbel, mullet, pike-perch, and roach. Fish abundance showed significant change according to sampling sites, depth strata, and the different mesh sizes used. From the reservoir to the tributary, it was concluded that fish biomass distribution was governed by depth and was most abundant in the upper water layers. Species size distribution differed significantly between the two reservoirs, exceeding the length at first maturity. Species composition and abundance were greater in Lahjar reservoir than in Ghezala. Both reservoirs require support actions to improve fish productivity. PMID:27220503

  13. Resilience and tipping points of an exploited fish population over six decades.

    PubMed

    Vasilakopoulos, Paraskevas; Marshall, C Tara

    2015-05-01

    Complex natural systems with eroded resilience, such as populations, ecosystems and socio-ecological systems, respond to small perturbations with abrupt, discontinuous state shifts, or critical transitions. Theory of critical transitions suggests that such systems exhibit fold bifurcations featuring folded response curves, tipping points and alternate attractors. However, there is little empirical evidence of fold bifurcations occurring in actual complex natural systems impacted by multiple stressors. Moreover, resilience of complex systems to change currently lacks clear operational measures with generic application. Here, we provide empirical evidence for the occurrence of a fold bifurcation in an exploited fish population and introduce a generic measure of ecological resilience based on the observed fold bifurcation attributes. We analyse the multivariate development of Barents Sea cod (Gadus morhua), which is currently the world's largest cod stock, over six decades (1949-2009), and identify a population state shift in 1981. By plotting a multivariate population index against a multivariate stressor index, the shift mechanism was revealed suggesting that the observed population shift was a nonlinear response to the combined effects of overfishing and climate change. Annual resilience values were estimated based on the position of each year in relation to the fitted attractors and assumed tipping points of the fold bifurcation. By interpolating the annual resilience values, a folded stability landscape was fit, which was shaped as predicted by theory. The resilience assessment suggested that the population may be close to another tipping point. This study illustrates how a multivariate analysis, supported by theory of critical transitions and accompanied by a quantitative resilience assessment, can clarify shift mechanisms in data-rich complex natural systems. PMID:25545249

  14. Specific IgE to fish extracts does not predict allergy to specific species within an adult fish allergic population

    PubMed Central

    2014-01-01

    Background Fish is an important cause of food allergy. Studies on fish allergy are scarce and in most cases limited to serological evaluation. Our objective was to study patterns of self-reported allergy and tolerance to different commonly consumed fish species and its correlation to IgE sensitization to the same species. Methods Thirty-eight adult fish allergic patients completed a questionnaire regarding atopy, age of onset and symptoms to 13 commonly consumed fish species in the Netherlands (pangasius, cod, herring, eel, hake, pollock, mackerel, tilapia, salmon, sardine, tuna, plaice and swordfish). Specific IgE to these fish extracts were analyzed by ImmunoCAP. Results Median age of onset of fish allergy was 8.5 years. Severe reactions were reported by the majority of patients (n = 20 (53%) respiratory and of these 20 patients, 6 also had cardiovascular symptoms). After diagnosis, 66% of the patients had eliminated all fish from their diet. Allergy to all species ever tried was reported by 59%. In relation to species ever tried, cod (84%) and herring (79%) were the most frequently reported culprit species while hake (57%) and swordfish (55%) were the least frequent. A positive sIgE (value ≥ 0.35 kUA/L) to the culprit species ranged between 50% (swordfish) and 100% (hake). In tolerant patients, a negative sIgE (value < 0.35 kUA/L) ranged from 0% (hake, pollock and swordfish) to 75% (sardine). For cod, the agreement between sIgE test results and reported allergy or tolerance was 82% and 25%, respectively. Sensitization to cod parvalbumin (Gad c 1) was present in 77% of all patients. Conclusion Serological cross-reactivity between fish species is frequent, but in a significant proportion of patients, clinical relevance appears to be limited to only certain species. A well-taken history or food challenge is required for discrimination between allergy to the different fish species. PMID:25225608

  15. The impacts of mobile fishing gear on seafloor habitats in the Gulf of Maine (Northwest Atlantic): implications for conservation of fish populations

    USGS Publications Warehouse

    Auster, Peter J.; Malatesta, Richard J.; Langton, Richard W.; Watting, Les; Valentine, Page C.; Donaldson, Carol Lee S.; Langton, Elizabeth W.; Shepard, Andrew N.; Babb, War G.

    1997-01-01

    Fishing gear alters seafloor habitats, but the extent of these alterations, and their effects, have not been quantified extensively in the northwest Atlantic. Understanding the extent of these impacts, and their effects on populations of living marine resources, is needed to properly manage current and future levels of fishing effort and fishing power. For example, the entire U.S. side of the Gulf of Maine was impacted annually by mobile fishing gear between 1984 and 1990, based on calculations of area swept by trawl and dredge gear. Georges Bank was imparted three to nearly four times annually during the same period. Studies at three sites in the Gulf of Maine (off Swans Island, Jeffreys Bank, and Stellwagen Bank) showed that mobile fishing gear altered the physical structure (=complexity) of benthic habitats. Complexity was reduced by direct removal of biogenic (e.g., sponges, hydrozoans, bryozoans, amphipod tubes, holothurians, shell aggregates) and‐ sedimentary (e.g., sand waves, depressions) structures. Also, removal of organisms that create.structures (e.g., crabs, scallops) indirectly reduced complexity. Reductions in habitat complexity may lead to increased predation on juveniles of harvested species and ultimately recruitment to the harvestable stock. Because of a lack of reference sites, where use of mobile fishing is prohibited, no empirical studies have yet been conducted on a scale that could demonstrate population level effects of habitat‐management options. If marine fisheries management is to evolve toward an ecosystem or habitat management approach, experiments are required on the effects of habitat change, both anthropogenic and natural.

  16. The impacts of mobile fishing gear on seafloor habitats in the gulf of maine (Northwest Atlantic): Implications for conservation of fish populations

    USGS Publications Warehouse

    Auster, P.J.; Malatesta, R.J.; Langton, R.W.; Watling, Les; Valentine, P.C.; Donaldson, C.L.S.; Langton, E.W.; Shepard, A.N.; Babb, Ivar G.

    1996-01-01

    Fishing gear alters seafloor habitats, but the extent of these alterations, and their effects, have not been quantified extensively in the northwest Atlantic. Understanding the extent of these impacts, and their effects on populations of living marine resources, is needed to properly manage current and future levels of fishing effort and fishing power. For example, the entire U.S. side of the Gulf of Maine was impacted annually by mobile fishing gear between 1984 and 1990, based on calculations of area swept by trawl and dredge gear. Georges Bank was impacted three to nearly four times annually during the same period. Studies at three sites in the Gulf of Maine (off Swans Island, Jeffreys Bank, and Stellwagen Bank) showed that mobile fishing gear altered the physical structure (=complexity) of benthic habitats. Complexity was reduced by direct removal of biogenic (e.g., sponges, hydrozoans, bryozoans, amphipod tubes, holothurians, shell aggregates) and sedimentary (e.g., sand waves, depressions) structures. Also, removal of organisms that create structures (e.g., crabs, scallops) indirectly reduced complexity. Reductions in habitat complexity may lead to increased predation on juveniles of harvested species and ultimately recruitment to the harvestable stock. Because of a lack of reference sites, where use of mobile fishing is prohibited, no empirical studies have yet been conducted on a scale that could demonstrate population level effects of habitat-management options. If marine fisheries management is to evolve toward an ecosystem or habitat management approach, experiments are required on the effects of habitat change, both anthropogenic and natural.

  17. Exposure to physical and sexual violence prior to imprisonment predicts mental health and substance use treatments in prison populations.

    PubMed

    Sánchez, Francisco Caravaca; Luna, Aurelio; Mundt, Adrian

    2016-08-01

    The present study aimed to establish rates of exposure to physical or sexual violence (PSV) prior to imprisonment for prisoners in Spain and to explore whether people exposed to PSV access mental health treatment during imprisonment. In a sample of 2484 male and 225 female prisoners, socio-demographic variables, exposure to PSV prior to imprisonment and mental health treatments during imprisonment were assessed. Frequencies were calculated as per cent values with 95% confidence intervals (CI). The Risk Ratio (RR) of PSV and other socio-demographic variables to associate with mental health treatment during imprisonment was established. History of PSV was present in 35.2% (95% CI: 33.3-37.0) of the male and 40.0% (95% CI: 33.9-46.8) of the female prisoners. 70.7% (95% CI: 67.8-73.9) of the male and 76.9% (95% CI: 67.7-86.0) of the female prisoners with prior exposure to PSV were in mental health treatment during imprisonment. PSV was a significant predictor of mental health treatment during imprisonment in male (RR: 2.79; 95% CI 2.44-2.92) and female (RR: 1.94; 95% CI 1.76-2.23) prisoners. Most people with exposure to PSV prior to imprisonment access mental health treatment during imprisonment. Treatments may have to focus more on traumatic experiences. PMID:27262089

  18. Spotlight on "Long-Term English Language Learners": Characteristics and Prior Schooling Experiences of an Invisible Population

    ERIC Educational Resources Information Center

    Menken, Kate; Kleyn, Tatyana; Chae, Nabin

    2012-01-01

    This article presents qualitative research findings about the characteristics and prior schooling experiences of "long-term English language learners" (LTELLs), who have attended U.S. schools for 7 years or more, and about whom there is little empirical research, despite their significant numbers. Findings indicate that these students are orally…

  19. Comparison of sampling methodologies and estimation of population parameters for a temporary fish ectoparasite.

    PubMed

    Artim, J M; Sikkel, P C

    2016-08-01

    Characterizing spatio-temporal variation in the density of organisms in a community is a crucial part of ecological study. However, doing so for small, motile, cryptic species presents multiple challenges, especially where multiple life history stages are involved. Gnathiid isopods are ecologically important marine ectoparasites, micropredators that live in substrate for most of their lives, emerging only once during each juvenile stage to feed on fish blood. Many gnathiid species are nocturnal and most have distinct substrate preferences. Studies of gnathiid use of habitat, exploitation of hosts, and population dynamics have used various trap designs to estimate rates of gnathiid emergence, study sensory ecology, and identify host susceptibility. In the studies reported here, we compare and contrast the performance of emergence, fish-baited and light trap designs, outline the key features of these traps, and determine some life cycle parameters derived from trap counts for the Eastern Caribbean coral-reef gnathiid, Gnathia marleyi. We also used counts from large emergence traps and light traps to estimate additional life cycle parameters, emergence rates, and total gnathiid density on substrate, and to calibrate the light trap design to provide estimates of rate of emergence and total gnathiid density in habitat not amenable to emergence trap deployment. PMID:27330985

  20. A review of methods for estimating mortality due to parasites in wild fish populations

    NASA Astrophysics Data System (ADS)

    Lester, R. J. G.

    1984-03-01

    Six methods are described for detecting mortality due to parasitic infections in natural fish populations. They are: (a) through autopsies; (b) by determining the frequency of infections known to be eventually lethal; (c) by observing a decrease in the prevalence of a long-lived parasite (or permanent scar from a parasite) with host age; (d) by observing a decrease in the variance/mean ratio for the parasites with host age; (e) by comparing the observed frequency of a combination of two independent events with the calculated probability of their occurrence; and finally (f) by comparing the observed frequency distribution of the parasite, with a projected frequency based on data from lightly infected fish. In this technique, negative binomials are fitted to the data and truncated at various points. Some advantages and disadvantages of the different methods are given, together with examples. The methods do not necessarily provide definitive answers, but they are indicative of whether or not significant parasite-related mortality may be occurring, and in some cases provide an estimate of its probable magnitude in terms of the total host mortality rate.

  1. Projected risk of population declines for native fish species in the Upper Mississippi River

    USGS Publications Warehouse

    Crimmins, S.M.; Boma, P.; Thogmartin, W.E.

    2015-01-01

    Conservationists are in need of objective metrics for prioritizing the management of habitats. For individual species, the threat of extinction is often used to prioritize what species are in need of conservation action. Using long-term monitoring data, we applied a Bayesian diffusion approximation to estimate quasi-extinction risk for 54 native fish species within six commercial navigation reaches along a 1350-km gradient of the upper Mississippi River system. We found a strong negative linear relationship between quasi-extinction risk and distance upstream. For some species, quasi-extinction estimates ranged from nearly zero in some reaches to one in others, suggesting substantial variability in threats facing individual river reaches. We found no evidence that species traits affected quasi-extinction risk across the entire system. Our results indicate that fishes within the upper Mississippi River system face localized threats that vary across river impact gradients. This suggests that conservation actions should be focused on local habitat scales but should also consider the additive effects on downstream conditions. We also emphasize the need for identification of proximate mechanisms behind observed and predicted population declines, as conservation actions will require mitigation of such mechanisms. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

  2. Oceanography and life history predict contrasting genetic population structure in two Antarctic fish species.

    PubMed

    Young, Emma F; Belchier, Mark; Hauser, Lorenz; Horsburgh, Gavin J; Meredith, Michael P; Murphy, Eugene J; Pascoal, Sonia; Rock, Jennifer; Tysklind, Niklas; Carvalho, Gary R

    2015-06-01

    Understanding the key drivers of population connectivity in the marine environment is essential for the effective management of natural resources. Although several different approaches to evaluating connectivity have been used, they are rarely integrated quantitatively. Here, we use a 'seascape genetics' approach, by combining oceanographic modelling and microsatellite analyses, to understand the dominant influences on the population genetic structure of two Antarctic fishes with contrasting life histories, Champsocephalus gunnari and Notothenia rossii. The close accord between the model projections and empirical genetic structure demonstrated that passive dispersal during the planktonic early life stages is the dominant influence on patterns and extent of genetic structuring in both species. The shorter planktonic phase of C. gunnari restricts direct transport of larvae between distant populations, leading to stronger regional differentiation. By contrast, geographic distance did not affect differentiation in N. rossii, whose longer larval period promotes long-distance dispersal. Interannual variability in oceanographic flows strongly influenced the projected genetic structure, suggesting that shifts in circulation patterns due to climate change are likely to impact future genetic connectivity and opportunities for local adaptation, resilience and recovery from perturbations. Further development of realistic climate models is required to fully assess such potential impacts. PMID:26029262

  3. Subtle genetic structure reveals restricted connectivity among populations of a coral reef fish inhabiting remote atolls

    PubMed Central

    Underwood, Jim N; Travers, Michael J; Gilmour, James P

    2012-01-01

    We utilized a spatial and temporal analyses of genetic structure, supplemented with ecological and oceanographic analysis, to assess patterns of population connectivity in a coral reef fish Chromis margaritifer among the unique and remote atolls in the eastern Indian Ocean. A subtle, but significant genetic discontinuity at 10 microsatellite DNA loci was detected between atoll systems corresponding with a low (≤ 1%) probability of advection across the hundreds of kilometers of open ocean that separates them. Thus, although genetic connections between systems are likely maintained by occasional long-distance dispersal of C. margaritifer larvae, ecological population connectivity at this spatial scale appears to be restricted. Further, within one of these atoll systems, significant spatial differentiation among samples was accompanied by a lack of temporal pairwise differentiation between recruit and adult samples, indicating that restrictions to connectivity also occur at a local scale (tens of kilometers). In contrast, a signal of panmixia was detected at the other atoll system studied. Lastly, greater relatedness and reduced genetic diversity within recruit samples was associated with relatively large differences among them, indicating the presence of sweepstakes reproduction whereby a small proportion of adults contributes to recruitment in the next generation. These results are congruent with earlier work on hard corals, suggesting that local production of larvae drives population replenishment in these atoll systems for a range of coral reef species. PMID:22822442

  4. Oceanography and life history predict contrasting genetic population structure in two Antarctic fish species

    PubMed Central

    Young, Emma F; Belchier, Mark; Hauser, Lorenz; Horsburgh, Gavin J; Meredith, Michael P; Murphy, Eugene J; Pascoal, Sonia; Rock, Jennifer; Tysklind, Niklas; Carvalho, Gary R

    2015-01-01

    Understanding the key drivers of population connectivity in the marine environment is essential for the effective management of natural resources. Although several different approaches to evaluating connectivity have been used, they are rarely integrated quantitatively. Here, we use a ‘seascape genetics’ approach, by combining oceanographic modelling and microsatellite analyses, to understand the dominant influences on the population genetic structure of two Antarctic fishes with contrasting life histories, Champsocephalus gunnari and Notothenia rossii. The close accord between the model projections and empirical genetic structure demonstrated that passive dispersal during the planktonic early life stages is the dominant influence on patterns and extent of genetic structuring in both species. The shorter planktonic phase of C. gunnari restricts direct transport of larvae between distant populations, leading to stronger regional differentiation. By contrast, geographic distance did not affect differentiation in N. rossii, whose longer larval period promotes long-distance dispersal. Interannual variability in oceanographic flows strongly influenced the projected genetic structure, suggesting that shifts in circulation patterns due to climate change are likely to impact future genetic connectivity and opportunities for local adaptation, resilience and recovery from perturbations. Further development of realistic climate models is required to fully assess such potential impacts. PMID:26029262

  5. Subtle genetic structure reveals restricted connectivity among populations of a coral reef fish inhabiting remote atolls.

    PubMed

    Underwood, Jim N; Travers, Michael J; Gilmour, James P

    2012-03-01

    We utilized a spatial and temporal analyses of genetic structure, supplemented with ecological and oceanographic analysis, to assess patterns of population connectivity in a coral reef fish Chromis margaritifer among the unique and remote atolls in the eastern Indian Ocean. A subtle, but significant genetic discontinuity at 10 microsatellite DNA loci was detected between atoll systems corresponding with a low (≤ 1%) probability of advection across the hundreds of kilometers of open ocean that separates them. Thus, although genetic connections between systems are likely maintained by occasional long-distance dispersal of C. margaritifer larvae, ecological population connectivity at this spatial scale appears to be restricted. Further, within one of these atoll systems, significant spatial differentiation among samples was accompanied by a lack of temporal pairwise differentiation between recruit and adult samples, indicating that restrictions to connectivity also occur at a local scale (tens of kilometers). In contrast, a signal of panmixia was detected at the other atoll system studied. Lastly, greater relatedness and reduced genetic diversity within recruit samples was associated with relatively large differences among them, indicating the presence of sweepstakes reproduction whereby a small proportion of adults contributes to recruitment in the next generation. These results are congruent with earlier work on hard corals, suggesting that local production of larvae drives population replenishment in these atoll systems for a range of coral reef species. PMID:22822442

  6. Population level impacts of cooling water withdrawals on harvested fish stocks.

    PubMed

    Newbold, Stephen C; Iovanna, Rich

    2007-04-01

    Trillions of gallons are withdrawn every year from U.S. rivers, estuaries, lakes, and coastal waters to cool the turbines of power plants and other equipment in manufacturing facilities. In the process, large numbers of aquatic organisms die from entrainment into the plant or impingement against the outer portion of the intake structure. In this paper, we develop a generalized age-structured population model with density dependent survival of sub-adult age classes, and we use the model to perform a screening analysis of the effects of entrainment and impingement for 15 harvested fish stocks off the California and Atlantic coasts. Stock sizes are estimated to be depressed by entrainment and impingement by less than 1% in 10 of the 15 cases considered, between 1 and 3% in two cases, and between 20 and 80% in three cases. A variety of sensitivity analyses are conducted to evaluate the influence of several sources of model and parameter uncertainties. PMID:17438750

  7. Lack of population genetic differentiation of a marine ovoviviparous fish Sebastes schlegelii in Northwestern Pacific.

    PubMed

    Zhang, Hui; Yanagimoto, Takashi; Zhang, Xiumei; Song, Na; Gao, Tianxiang

    2016-05-01

    Sebastes schlegelii is one of the fishes that aggregate around drifting seaweed during early development. To examine the population genetic structure of S. schlegelii, a 452-bp fragment of the mtDNA control region was sequenced and used to interpret life history characteristics and larval dispersal strategy. Two-hundred and twenty-one individuals from 13 sites across the entire range of S. schlegelii in China, Japan and Korea were analyzed. A neighbor-joining tree and network showed that there were no significant genealogical structures corresponding to sampling locations. AMOVA, pair-wise FST and exact test revealed no significant genetic differentiation among locations. The migration rate among locations was high based on the result of LAMARC. We conclude that larval dispersal with drifting seaweed and the current environmental factors may play an important role in shaping the contemporary phylogeographic pattern and genetic homogeneity of S. schlegelii. PMID:25269000

  8. ShapeR: An R Package to Study Otolith Shape Variation among Fish Populations

    PubMed Central

    Libungan, Lísa Anne; Pálsson, Snæbjörn

    2015-01-01

    ShapeR is an open source software package that runs on the R platform and is specifically designed to study otolith shape variation among fish populations. The package extends previously described software used for otolith shape analysis by allowing the user to automatically extract closed contour outlines from a large number of images, perform smoothing to eliminate pixel noise, choose from conducting either a Fourier or Wavelet transform to the outlines and visualize the mean shape. The output of the package are independent Fourier or Wavelet coefficients which can be directly imported into a wide range of statistical packages in R. The package might prove useful in studies of any two dimensional objects. PMID:25803855

  9. ShapeR: an R package to study otolith shape variation among fish populations.

    PubMed

    Libungan, Lísa Anne; Pálsson, Snæbjörn

    2015-01-01

    ShapeR is an open source software package that runs on the R platform and is specifically designed to study otolith shape variation among fish populations. The package extends previously described software used for otolith shape analysis by allowing the user to automatically extract closed contour outlines from a large number of images, perform smoothing to eliminate pixel noise, choose from conducting either a Fourier or Wavelet transform to the outlines and visualize the mean shape. The output of the package are independent Fourier or Wavelet coefficients which can be directly imported into a wide range of statistical packages in R. The package might prove useful in studies of any two dimensional objects. PMID:25803855

  10. Population changes in a biofilm reactor for phosphorus removal as evidenced by the use of FISH.

    PubMed

    Falkentoft, Christina M; Müller, Elisabeth; Arnz, Patrik; Harremoës, Poul; Mosbaek, Hans; Wilderer, Peter A; Wuertz, Stefan

    2002-01-01

    Induction of denitrification was investigated for a lab-scale phosphate removing biofilm reactor where oxygen was replaced with nitrate as the electron acceptor. Acetate was used as the carbon source. The original biofilm (acclimatised with oxygen) was taken from a well-established large-scale reactor. During the first run, a decrease in the denitrifying bio-P activity was observed after 1 month following a change in the anaerobic phase length. This was initially interpreted as a shift in the microbial population caused by the changed operation. In the second run, biomass samples were regularly collected and analysed by fluorescent in situ hybridisation (FISH) and confocal laser scanning microscopy (CLSM). Concurrently, samples were taken from the original reactor with oxygen as electron acceptor in order to investigate natural microbial fluctuations. A similar decrease in the activity as in the first run was seen after one month, although the phase lengths had not been varied. Hence, the decrease after 1 month in the first and second run should be seen as a start-up phenomenon. FISH could detect a noticeable shift in the microbial population mainly within the first 2 weeks of operation. Almost all bacteria belonging to the alpha subclass disappeared and characteristic clusters of the beta and gamma subclasses were lost. Small clusters of gram-positive bacteria with a high DNA G + C content (GPBHGC) were gradually replaced by filamentous GPBHGC. Most of the bacteria in the denitrifying, phosphate removing biofilm belonged to the beta subclass of Proteobacteria. The applied set of gene probes had been selected based on existing literature on biological phosphate removing organisms and included a recently published probe for a Rhodocyclus-like clone. However, none of the specific probes hybridised to the dominant bacterial groups in the reactors investigated. No noticeable changes were detected in the aerobic bench-scale reactor during this period, indicating that

  11. Use of population viability analysis to evaluate CITES trade-management options for threatened marine fishes.

    PubMed

    Curtis, Janelle M R; Vincent, Amanda C J

    2008-10-01

    Achieving multiple conservation objectives can be challenging, particularly under high uncertainty. Having agreed to limit seahorse (Hippocampus) exports to sustainable levels, signatories to the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) were offered the option of a single 10-cm minimum size limit (MSL) as an interim management measure for all Hippocampus species (> or =34). Although diverse stakeholders supported the recommended MSL, its biological and socioeconomic implications were not assessed quantitatively. We combined population viability analysis, model sensitivity analysis, and economic information to evaluate the trade-off between conservation threat to and long-term cumulative income from these exploited marine fishes of high conservation concern. We used the European long-snouted seahorse (Hippocampus guttulatus) as a representative species to compare the performance of MSLs set at alternative biological reference points. Our sensitivity analyses showed that in most of our scenarios, setting the MSL just above size at maturity (9.7 cm in H. guttulatus) would not prevent exploited populations from becoming listed as vulnerable. By contrast, the relative risk of decline and extinction were almost halved--at a cost of only a 5.6% reduction in long-term catches--by increasing the MSL to the size reached after at least one full reproductive season. On the basis of our analysis, a precautionary increase in the MSL could be compatible with sustaining fishers' livelihoods and international trade. Such management tactics that aid species conservation and have minimal effects on long term catch trends may help bolster the case for CITES trade management of other valuable marine fishes. PMID:18680503

  12. Can Intrapartum Cardiotocography Predict Uterine Rupture among Women with Prior Caesarean Delivery?: A Population Based Case-Control Study

    PubMed Central

    Andersen, Malene M.; Thisted, Dorthe L. A.; Amer-Wåhlin, Isis; Krebs, Lone

    2016-01-01

    Objective To compare cardiotocographic abnormalities recorded during labour in women with prior caesarean delivery (CD) and complete uterine rupture with those recorded in controls with prior CD without uterine rupture. Study Design Women with complete uterine rupture during labour between 1997 and 2008 were identified in the Danish Medical Birth Registry (n = 181). Cases were validated by review of medical records and 53 cases with prior CD, trial of labour, available cardiotocogram (CTG) and complete uterine rupture were included and compared with 43 controls with prior CD, trial of labour and available CTG. The CTG tracings were assessed by 19 independent experts divided into groups of three different experts for each tracing. The assessors were blinded to group, outcome and clinical data. They analyzed occurrence of defined abnormalities and classified the traces as normal, suspicious, pathological or pre-terminal according to international guidelines (FIGO). Results A pathological CTG during the first stage of labour was present in 77% of cases and in 53% of the controls (OR 2.58 [CI: 0.96–6.94] P = 0.066). Fetal tachycardia was more frequent in cases with uterine rupture (OR 2.50 [CI: 1.0–6.26] P = 0.053). Significantly more cases showed more than 10 severe variable decelerations compared with controls (OR 22 [CI: 1.54–314.2] P = 0.022). Uterine tachysystole was not correlated with the presence of uterine rupture. Conclusion A pathological cardiotocogram should lead to particular attention on threatening uterine rupture but cannot be considered a strong predictor as it is common in all women with trial of labour after caesarean delivery. PMID:26872018

  13. Assessing impacts of land-applied manure from concentrated animal feeding operations on fish populations and communities.

    PubMed

    Leet, Jessica K; Lee, Linda S; Gall, Heather E; Goforth, Reuben R; Sassman, Stephen; Gordon, Denise A; Lazorchak, James M; Smith, Mark E; Jafvert, Chad T; Javfert, Chad T; Sepúlveda, Maria S

    2012-12-18

    Concentrated animal feeding operation (CAFO) manure is a cost-effective fertilizer. In the Midwest, networks of subsurface tile-drains expedite transport of animal hormones and nutrients from land-applied CAFO manure to adjacent waterways. The objective of this study was to evaluate impacts of land-applied CAFO manure on fish populations and communities. Water chemistry including hormone, pesticide, and nutrient concentrations was characterized from study sites along with fish assemblage structure, growth, and endocrine disruption assessed in selected fish species. Although most CAFO water samples had hormone concentrations <1 ng/L, equivalent concentrations for 17β-E2 and 17α-TB peaked at >30 ng/L each during the period of spawning, hatching, and development for resident fishes. CAFO sites had lower fish species richness, and fishes exhibited faster somatic growth and lower reproductive condition compared to individuals from the reference site. Fathead minnows (Pimephales promelas) exposed to CAFO ditchwater during early developmental stages exhibited significantly skewed sex ratios toward males. Maximum observed hormone concentrations were well above the lowest observable effect concentrations for these hormones; however, complexities at the field scale make it difficult to directly relate hormone concentration and impacts on fish. Complicating factors include the consistent presence of pesticides and nutrients, and the difference in temperature and stream architecture of the CAFO-impacted ditches compared to the reference site (e.g., channelization, bottom substrate, shallow pools, and riparian cover). PMID:23171355

  14. Mercury (Hg) in fish consumed by the local population of the Jaguaribe River lower basin, Northeast Brazil.

    PubMed

    Costa, B G B; Lacerda, L D

    2014-12-01

    The knowledge of Hg concentrations in fish is of considerable interest since these organisms are a major source of protein to coastal human populations and fishing communities. The main source of human exposure to Hg contamination occurs through the consumption of fish. In this paper, we compare Hg concentration in 13 fish species from Jaguaribe River lower basin and an adjacent coastal region in the northeastern coast of Brazil. We sampled fish from three stretches of the river: fluvial, estuarine, and marine regions. We tested the hypothesis that Hg concentration in muscle tissue vary according to species, location, and trophic level. Significant differences were observed among species and trophic level, but these could not be observed among the regions studied. As expected, the highest concentrations were observed in carnivorous fish (5.6-107.5; 26.9 ± 18.8 ng g(-1)). Hg concentrations observed in this study are similar to those observed in regions of low environmental contamination. We estimated Hg intake to vary between 0.02 and 0.22 ng Hg kg body weight(-1) week(-1), for the average body weight of 56.7 kg, which was considered as low exposure and therefore, a low risk to consumers of fish from the regions studied. PMID:25119275

  15. Starvation can diversify the population structure and virulence strategies of an environmentally transmitting fish pathogen

    PubMed Central

    2014-01-01

    Background Generalist bacterial pathogens, with the ability for environmental survival and growth, often face variable conditions during their outside-host period. Abiotic factors (such as nutrient deprivation) act as selection pressures for bacterial characteristics, but their effect on virulence is not entirely understood. “Sit and wait” hypothesis expects that long outside-host survival selects for increased virulence, but maintaining virulence in the absence of hosts is generally expected to be costly if active investments are needed. We analysed how long term starvation influences bacterial population structure and virulence of an environmentally transmitting fish pathogen Flavobacterium columnare. Results F. columnare populations in distilled water and in lake water were monitored for 5 months. During the experiment, the population structure of F. columnare diversified by rough and soft colony morphotypes appearing among the ancestral rhizoid ones. After 5 months starvation in lake water, the virulence of the starved and ancestral bacterial isolates was tested. The starved rhizoid isolates had significantly higher virulence than the ancestral rhizoid, whereas the virulence of the rough isolates was low. Conclusions We suggest that F. columnare population diversification is an adaptation to tolerate unpredictable environment, but may also have other biological significance. Maintaining and increasing virulence ensures efficient invasion into the host especially under circumstances when the host density is low or the outside-host period is long. Changing from rhizoid into a rough morphotype has trade-offs in making bacteria less virulent and unable to exploit the host, but may ensure bacterial survival under unpredictable conditions. Our study gives an example how abiotic selection can diversify virulence of environmentally transmitting bacterial pathogen. PMID:24629049

  16. Assessing the health of fish populations in the Clinch River system: Application of multi-response bioindicators

    SciTech Connect

    Adams, M.; Greeley, M.; LeHew, R.; Ham, K.; Bevelhimer, M.

    1995-12-31

    As a component of the Clinch River Remedial Investigation Project, multi-response bioindicators have been used as integrative and holistic measures of fish population and community health. The integrated bioindicator approach involves measuring a suite of selected indicators at several levels of biological organization from the biomolecular to the community levels. Multi-response indicators of stress at several levels of biological organization provides insights into causal mechanisms between contaminant exposure and population-level effects and provides a basis for which the effectiveness of future remedial actions on fish population health can be evaluated. Bioindicator responses were grouped into six functional categories representing indicators of (1) contaminant exposure (detoxification enzymes), (2) organ dysfunction, (3) histopathology, (4) overall fish health (condition indices), (5) feeding and nutritional status, and (6) fish community integrity. Detoxification enzyme induction, histopathological effects, reproductive dysfunction, bioenergetic impairment, and reduced fish community diversity was observed at several sample sites in the Clinch River System. When all the bioindicators were evaluated together in a canonical variate analysis procedure, the integrated site responses segregated clearly into contaminant affected sites and reference areas. Most of these effects appear to be related to the downstream gradient in contaminant loading from the Oak Ridge Reservation and to the pattern of specific PCB congeners occurring at these sites.

  17. Study of population genetic polymorphism and gene flow rate in Indian snow trout, Schizothorax richardsonii fish of Himalaya, India.

    PubMed

    Sivaraman, G K; Barat, A; Ali, S; Mahanta, P C

    2014-11-01

    The genetic polymorphism and gene flow rate among the Indian snow trout fish population S. richadsonii from three different locations viz., Chirapani stream of Champawat district, Kosi and Gola river of Nainital district, Uttarakhand State, India were assessed by employing twenty numbers of Randomly Amplified Polymorphic DNA (RAPD) markers. The overall percent polymorphisms among these three populations were 14.76 with 6.56, 4.92 and 3.28 in Chirapani, Kosi and Gola river population, respectively. Chirapani population had higher proportion of polymorphic loci as compared to the Kosi and Gola. The higher value of genetic distance (0.1565) was obtained between Chirapani and Gola population and the lower value of genetic distance was observed between Chirapani and Kosi (0.1058) river population. The cluster analysis revealed that in the formation of two clusters, one consisted of Chirapani and Kosi and the other was Gola fish population. Gst estimates among these populations showed some extent of homogeneity with lower genetic differentiation rate between populations and further suggested that higher tolerance to mutation, as expected that RAPD bands, arose from both coding and non-coding DNA regions. The findings revealed that the rate of gene flow in three populations seemed very low i.e. highly conserved its genetic diversity in their natural waterbodies and indicative of little migration among populations (geographically isolated and not the possibilities man made interventions/introduction of similar kind of fish species). It is further concluded that the Chirapani, Kosi and Gola river populations of S. richardsonii were being conserved naturally in their habitat and the species actual genetic potential were being maintained (adaptation to local climatic conditions, reproduction, production traits and disease resistance trait etc) in their natural habitat. PMID:25522514

  18. Diagnostic methodology is critical for accurately determining the prevalence of ichthyophonus infections in wild fish populations

    USGS Publications Warehouse

    Kocan, R.; Dolan, H.; Hershberger, P.

    2011-01-01

    Several different techniques have been employed to detect and identify Ichthyophonus spp. in infected fish hosts; these include macroscopic observation, microscopic examination of tissue squashes, histological evaluation, in vitro culture, and molecular techniques. Examination of the peer-reviewed literature revealed that when more than 1 diagnostic method is used, they often result in significantly different results; for example, when in vitro culture was used to identify infected trout in an experimentally exposed population, 98.7% of infected trout were detected, but when standard histology was used to confirm known infected tissues from wild salmon, it detected ~50% of low-intensity infections and ~85% of high-intensity infections. Other studies on different species reported similar differences. When we examined a possible mechanism to explain the disparity between different diagnostic techniques, we observed non-random distribution of the parasite in 3-dimensionally visualized tissue sections from infected hosts, thus providing a possible explanation for the different sensitivities of commonly used diagnostic techniques. Based on experimental evidence and a review of the peer-reviewed literature, we have concluded that in vitro culture is currently the most accurate diagnostic technique for determining infection prevalence of Ichthyophonus, particularly when the exposure history of the population is not known.

  19. Diagnostic methodology is critical for accurately determining the prevalence of Ichthyophonus infections in wild fish populations.

    PubMed

    Kocan, Richard; Dolan, Heather; Hershberger, Paul

    2011-04-01

    Several different techniques have been employed to detect and identify Ichthyophonus spp. in infected fish hosts; these include macroscopic observation, microscopic examination of tissue squashes, histological evaluation, in vitro culture, and molecular techniques. Examination of the peer-reviewed literature revealed that when more than 1 diagnostic method is used, they often result in significantly different results; for example, when in vitro culture was used to identify infected trout in an experimentally exposed population, 98.7% of infected trout were detected, but when standard histology was used to confirm known infected tissues from wild salmon, it detected ~50% of low-intensity infections and ~85% of high-intensity infections. Other studies on different species reported similar differences. When we examined a possible mechanism to explain the disparity between different diagnostic techniques, we observed non-random distribution of the parasite in 3-dimensionally visualized tissue sections from infected hosts, thus providing a possible explanation for the different sensitivities of commonly used diagnostic techniques. Based on experimental evidence and a review of the peer-reviewed literature, we have concluded that in vitro culture is currently the most accurate diagnostic technique for determining infection prevalence of Ichthyophonus , particularly when the exposure history of the population is not known. PMID:21506773

  20. Assessment of partial nitrification reactor performance through microbial population shift using quinone profile, FISH and SEM.

    PubMed

    Sinha, B; Annachhatre, A P

    2007-12-01

    In engineered systems, biological nitrogen removal through partial nitrification to nitrite is of great interest. Accordingly, effect of operating parameters such as pH, DO and temperature on the accumulation of ammonia-oxidizers was investigated. pH of 8, DO of 0.3-0.5mg/l and temperature of 35 degrees C yielded a ratio of 0.9-1.5 of NO(2)N:NH(4)N in the effluent suitable as a feed for Anammox reactor. Microbial population shift during start-up was assessed using quinone profile, SEM and FISH. UQ-8 in the biomass, which is the predominant quinone in ammonia-oxidizers, increased from 24.8% on Day 1 to 61.2% on Day 136. Fluorescence in situ hybridization analysis in the reactor showed that ammonia-oxidizing bacteria gradually outcompeted other bacteria and was the dominant population. The morphology and inner structure of the granular sludge was observed using SEM and the photographs indicated that the aerobic granular sludge showed a shift towards spherical and small rod-shaped clusters. PMID:17257833

  1. COLLAPSE OF A FISH POPULATION FOLLOWING EXPOSURE TO A SYNTHETIC ESTROGEN

    EPA Science Inventory

    Municipal wastewaters are a complex mixture containing estrogens and estrogen mimics that are known to affect the reproductive health of wild fishes. Male fishes downstream of some wastewater outfalls produce vitellogenin (VTG) (a protein normally synthesized by females during oo...

  2. Toxicology across scales: Cell population growth in vitro predicts reduced fish growth.

    PubMed

    Stadnicka-Michalak, Julita; Schirmer, Kristin; Ashauer, Roman

    2015-08-01

    Environmental risk assessment of chemicals is essential but often relies on ethically controversial and expensive methods. We show that tests using cell cultures, combined with modeling of toxicological effects, can replace tests with juvenile fish. Hundreds of thousands of fish at this developmental stage are annually used to assess the influence of chemicals on growth. Juveniles are more sensitive than adult fish, and their growth can affect their chances to survive and reproduce. Thus, to reduce the number of fish used for such tests, we propose a method that can quantitatively predict chemical impact on fish growth based on in vitro data. Our model predicts reduced fish growth in two fish species in excellent agreement with measured in vivo data of two pesticides. This promising step toward alternatives to fish toxicity testing is simple, inexpensive, and fast and only requires in vitro data for model calibration. PMID:26601229

  3. Toxicology across scales: Cell population growth in vitro predicts reduced fish growth

    PubMed Central

    Stadnicka-Michalak, Julita; Schirmer, Kristin; Ashauer, Roman

    2015-01-01

    Environmental risk assessment of chemicals is essential but often relies on ethically controversial and expensive methods. We show that tests using cell cultures, combined with modeling of toxicological effects, can replace tests with juvenile fish. Hundreds of thousands of fish at this developmental stage are annually used to assess the influence of chemicals on growth. Juveniles are more sensitive than adult fish, and their growth can affect their chances to survive and reproduce. Thus, to reduce the number of fish used for such tests, we propose a method that can quantitatively predict chemical impact on fish growth based on in vitro data. Our model predicts reduced fish growth in two fish species in excellent agreement with measured in vivo data of two pesticides. This promising step toward alternatives to fish toxicity testing is simple, inexpensive, and fast and only requires in vitro data for model calibration. PMID:26601229

  4. Population Growth Rates of Reef Sharks with and without Fishing on the Great Barrier Reef: Robust Estimation with Multiple Models

    PubMed Central

    Hisano, Mizue; Connolly, Sean R.; Robbins, William D.

    2011-01-01

    Overfishing of sharks is a global concern, with increasing numbers of species threatened by overfishing. For many sharks, both catch rates and underwater visual surveys have been criticized as indices of abundance. In this context, estimation of population trends using individual demographic rates provides an important alternative means of assessing population status. However, such estimates involve uncertainties that must be appropriately characterized to credibly and effectively inform conservation efforts and management. Incorporating uncertainties into population assessment is especially important when key demographic rates are obtained via indirect methods, as is often the case for mortality rates of marine organisms subject to fishing. Here, focusing on two reef shark species on the Great Barrier Reef, Australia, we estimated natural and total mortality rates using several indirect methods, and determined the population growth rates resulting from each. We used bootstrapping to quantify the uncertainty associated with each estimate, and to evaluate the extent of agreement between estimates. Multiple models produced highly concordant natural and total mortality rates, and associated population growth rates, once the uncertainties associated with the individual estimates were taken into account. Consensus estimates of natural and total population growth across multiple models support the hypothesis that these species are declining rapidly due to fishing, in contrast to conclusions previously drawn from catch rate trends. Moreover, quantitative projections of abundance differences on fished versus unfished reefs, based on the population growth rate estimates, are comparable to those found in previous studies using underwater visual surveys. These findings appear to justify management actions to substantially reduce the fishing mortality of reef sharks. They also highlight the potential utility of rigorously characterizing uncertainty, and applying multiple

  5. Population growth rates of reef sharks with and without fishing on the great barrier reef: robust estimation with multiple models.

    PubMed

    Hisano, Mizue; Connolly, Sean R; Robbins, William D

    2011-01-01

    Overfishing of sharks is a global concern, with increasing numbers of species threatened by overfishing. For many sharks, both catch rates and underwater visual surveys have been criticized as indices of abundance. In this context, estimation of population trends using individual demographic rates provides an important alternative means of assessing population status. However, such estimates involve uncertainties that must be appropriately characterized to credibly and effectively inform conservation efforts and management. Incorporating uncertainties into population assessment is especially important when key demographic rates are obtained via indirect methods, as is often the case for mortality rates of marine organisms subject to fishing. Here, focusing on two reef shark species on the Great Barrier Reef, Australia, we estimated natural and total mortality rates using several indirect methods, and determined the population growth rates resulting from each. We used bootstrapping to quantify the uncertainty associated with each estimate, and to evaluate the extent of agreement between estimates. Multiple models produced highly concordant natural and total mortality rates, and associated population growth rates, once the uncertainties associated with the individual estimates were taken into account. Consensus estimates of natural and total population growth across multiple models support the hypothesis that these species are declining rapidly due to fishing, in contrast to conclusions previously drawn from catch rate trends. Moreover, quantitative projections of abundance differences on fished versus unfished reefs, based on the population growth rate estimates, are comparable to those found in previous studies using underwater visual surveys. These findings appear to justify management actions to substantially reduce the fishing mortality of reef sharks. They also highlight the potential utility of rigorously characterizing uncertainty, and applying multiple

  6. Evaluation of Fluoride Retention Due to Most Commonly Consumed Estuarine Fishes Among Fish Consuming Population of Andhra Pradesh as a Contributing Factor to Dental Fluorosis: A Cross-Sectional Study

    PubMed Central

    Ganta, Shravani; Nagaraj, Anup; Pareek, Sonia; Sidiq, Mohsin; Singh, Kushpal; Vishnani, Preeti

    2015-01-01

    Background Fluoride in drinking water is known for both beneficial and detrimental effects on health. The principal sources of fluoride include water, some species of vegetation, certain edible marine animals, dust and industrial processes. The purpose of this study was to evaluate the fluoride retention of most commonly consumed estuarine fishes among fish consuming population of Andhra Pradesh. Materials and Methods A cross-sectional study was conducted to evaluate the amount of fluoride retention due to ten most commonly consumed estuarine fishes as a contributing factor to Fluorosis by SPADNS Spectrophotometric method. The presence and severity of dental fluorosis among fish consuming population was recorded using Community Fluorosis Index. Statistical analysis was done using MedCalc v12.2.1.0 software. Results For Sea water fishes, the fluoride levels in bone were maximum in Indian Sardine (4.22 ppm). Amongst the river water fishes, the fluoride levels in bone were maximum in Catla (1.51 ppm). Also, the mean total fluoride concentrations of all the river fishes in skin, muscle and bone were less (0.86 ppm) as compared to the sea water fishes (2.59 ppm). It was unveiled that sea fishes accumulate relatively large amounts of Fluoride as compared to the river water fishes. The mean Community Fluorosis Index was found to be 1.06 amongst a sampled fish consuming population. Evaluation by Community Index for Dental fluorosis (CFI) suggested that fluorosis is of medium public health importance. Conclusion It was analysed that bone tends to accumulate more amount of fluoride followed by muscle and skin which might be due to the increased permeability and chemical trapping of fluoride inside the tissues. The amount of fluoride present in the fishes is directly related to the severity of fluorosis amongst fish consuming population, suggesting fishes as a contributing factor to fluorosis depending upon the dietary consumption. PMID:26266208

  7. Estimating fish consumption and targeting high risk consumer populations in NJ and NY

    EPA Science Inventory

    An estimated 16.4% of US females of reproductive age (15 to 45 years) eat fish at least once per day. While fish is a good source of protein, with some species high in the omega-3 fatty acids that are associated with cardiovascular health, studies also indicate some fish and she...

  8. Characterization of MHC class IIB for four endangered Australian freshwater fishes obtained from ecologically divergent populations.

    PubMed

    Bracamonte, Seraina E; Smith, Steve; Hammer, Michael; Pavey, Scott A; Sunnucks, Paul; Beheregaray, Luciano B

    2015-10-01

    Genetic diversity is an essential aspect of species viability, and assessments of neutral genetic diversity are regularly implemented in captive breeding and conservation programs. Despite their importance, information from adaptive markers is rarely included in such programs. A promising marker of significance in fitness and adaptive potential is the major histocompatibility complex (MHC), a key component of the adaptive immune system. Populations of Australian freshwater fishes are generally declining in numbers due to human impacts and the introduction of exotic species, a scenario of particular concern for members of the family Percichthyidae, several of which are listed as nationally vulnerable or endangered, and hence subject to management plans, captive breeding, and restoration plans. We used a next-generation sequencing approach to characterize the MHC IIB locus and provide a conservative description of its levels of diversity in four endangered percichthyids: Gadopsis marmoratus, Macquaria australasica, Nannoperca australis, and Nannoperca obscura. Evidence is presented for a duplicated MHC IIB locus, positively selected sites and recombination of MHC alleles. Relatively moderate levels of diversity were detected in the four species, as well as in different ecotypes within each species. Phylogenetic analyses revealed genus specific clustering of alleles and no allele sharing among species. There were also no shared alleles observed between two ecotypes within G. marmoratus and within M. australasica, which might be indicative of ecologically-driven divergence and/or long divergence times. This represents the first characterization and assessment of MHC diversity for Percichthyidae, and also for Australian freshwater fishes in general, providing key genetic resources for a vertebrate group of increasing conservation concern. PMID:26093210

  9. The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics

    NASA Astrophysics Data System (ADS)

    Salzburger, Walter; Meyer, Axel

    With more than 3,000 species, the fish family Cichlidae is one of the most species-rich families of vertebrates. Cichlids occur in southern and central America, Africa, Madagascar, and India. The hotspot of their biodiversity is East Africa, where they form adaptive radiations composed of hundreds of endemic species in several lakes of various sizes and ages. The unparalleled species richness of East African cichlids has been something of a conundrum for evolutionary biologists and ecologists, since it has been in doubt whether these hundreds of species arose by allopatric speciation or whether it is necessary to invoke somewhat less traditional models of speciation, such as micro-allopatric, peripatric, or even sympatric speciation or evolution through sexual selection mediated by female choice. Ernst Mayr's analyses of these evolutionary uniquely diverse species assemblages have contributed to a more direct approach to this problem and have led to a deeper understanding of the patterns and processes that caused the formation of these huge groups of species. We review here recent molecular data on population differentiation and phylogenetics, which have helped to unravel, to some extent, the patterns and processes that led to the formation and ecological maintenance of cichlid species flocks. It is becoming apparent that sexually selected traits do play an important role in speciation in micro-allopatric or even sympatric settings. Species richness seems to be roughly correlated with the surface area, but not the age, of the lakes. We observe that the oldest lineages of a species flock of cichlids are often less species-rich and live in the open water or deepwater habitats. While the species flocks of the Lake Malawai and the Lake Victoria areas were shown to be monophyletic, the cichlid assemblage of Lake Tanganyika seems to consist of several independent species flocks. Cichlids emerge as an evolutionary model system in which many fundamental questions in

  10. Climate control on ancestral population dynamics: insight from Patagonian fish phylogeography.

    PubMed

    Ruzzante, Daniel E; Walde, Sandra J; Gosse, John C; Cussac, Victor E; Habit, Evelyn; Zemlak, Tyler S; Adams, Emily D M

    2008-05-01

    Changes in lake and stream habitats during the growth and retreat of Pleistocene glaciers repeatedly altered the spatial distributions and population sizes of the aquatic fauna of the southern Andes. Here, we use variation in mtDNA control region sequences to infer the temporal dynamics of two species of southern Andean fish during the past few million years. At least five important climate events were associated with major demographic changes: (i) the widespread glaciations of the mid-Pliocene (c. 3.5 Ma); (ii) the largest Patagonian glaciation (1.1 Ma); (iii) the coldest Pleistocene glaciation as indicated by stacked marine delta(18)O (c. 0.7 Ma); (iv) the last southern Patagonian glaciation to reach the Atlantic coast (180 ka); and (v) the last glacial maximum (LGM, 23-25,000 years ago). The colder-water inhabitant, Galaxias platei, underwent a strong bottleneck during the LGM and its haplotype diversity coalesces c. 0.7 Ma. In contrast, the more warm-adapted and widely distributed Percichthys trucha showed continuous growth through the last two glacial cycles but went through an important bottleneck c. 180,000 years ago, at which time populations east of the Andes may have been eliminated. Haplotype diversity of the most divergent P. trucha populations, found west of the Andes, coalesces c. 3.2 Ma. The demographic timelines obtained for the two species thus illustrate the continent-wide response of aquatic life in Patagonia to climate change during the Pleistocene, but also show how differing ecological traits and distributions led to distinctive responses. PMID:18363661

  11. Population-level assessments should be emphasized over community/ecosystem-level assessments. Environmental Sciences Division Publication No. 1535. [Concerning the impact of power plants on fish populations

    SciTech Connect

    Van Winkle, W.

    1980-01-01

    Arguments are presented in favor of emphasizing population-level assessments over community/ecosystem-level assessments. The two approaches are compared on each of four issues: (1) the nature of entrainment/impingement impacts; (2) the ability to forecast reliably for a single fish population as contrasted to the ability to forecast for an aquatic community or ecosystem; (3) practical considerations involving money, manpower, time, and the need to make decisions; and (4) the nature of societal and economic concerns. The conclusion on each of these four issues is that population-level assessments provide the optimal approach for evaluating the effects of entrainment and impingement mortality.

  12. Habitat selection by breeding waterbirds at ponds with size-structured fish populations

    NASA Astrophysics Data System (ADS)

    Kloskowski, Janusz; Nieoczym, Marek; Polak, Marcin; Pitucha, Piotr

    2010-07-01

    Fish may significantly affect habitat use by birds, either as their prey or as competitors. Fish communities are often distinctly size-structured, but the consequences for waterbird assemblages remain poorly understood. We examined the effects of size structure of common carp ( Cyprinus carpio) cohorts together with other biotic and abiotic pond characteristics on the distribution of breeding waterbirds in a seminatural system of monocultured ponds, where three fish age classes were separately stocked. Fish age corresponded to a distinct fish size gradient. Fish age and total biomass, macroinvertebrate and amphibian abundance, and emergent vegetation best explained the differences in bird density between ponds. Abundance of animal prey other than fish (aquatic macroinvertebrates and larval amphibians) decreased with increasing carp age in the ponds. Densities of ducks and smaller grebes were strongly negatively associated with fish age/size gradient. The largest of the grebes, the piscivorous great crested grebe ( Podiceps cristatus), was the only species that preferred ponds with medium-sized fish and was positively associated with total fish biomass. Habitat selection by bitterns and most rallids was instead strongly influenced by the relative amount of emergent vegetation cover in the ponds. Our results show that fish size structure may be an important cue for breeding habitat choice and a factor affording an opportunity for niche diversification in avian communities.

  13. Differences in the metabolic rates of exploited and unexploited fish populations: a signature of recreational fisheries induced evolution?

    PubMed

    Hessenauer, Jan-Michael; Vokoun, Jason C; Suski, Cory D; Davis, Justin; Jacobs, Robert; O'Donnell, Eileen

    2015-01-01

    Non-random mortality associated with commercial and recreational fisheries have the potential to cause evolutionary changes in fish populations. Inland recreational fisheries offer unique opportunities for the study of fisheries induced evolution due to the ability to replicate study systems, limited gene flow among populations, and the existence of unexploited reference populations. Experimental research has demonstrated that angling vulnerability is heritable in Largemouth Bass Micropterus salmoides, and is correlated with elevated resting metabolic rates (RMR) and higher fitness. However, whether such differences are present in wild populations is unclear. This study sought to quantify differences in RMR among replicated exploited and unexploited populations of Largemouth Bass. We collected age-0 Largemouth Bass from two Connecticut drinking water reservoirs unexploited by anglers for almost a century, and two exploited lakes, then transported and reared them in the same pond. Field RMR of individuals from each population was quantified using intermittent-flow respirometry. Individuals from unexploited reservoirs had a significantly higher mean RMR (6%) than individuals from exploited populations. These findings are consistent with expectations derived from artificial selection by angling on Largemouth Bass, suggesting that recreational angling may act as an evolutionary force influencing the metabolic rates of fishes in the wild. Reduced RMR as a result of fisheries induced evolution may have ecosystem level effects on energy demand, and be common in exploited recreational populations globally. PMID:26039091

  14. Differences in the Metabolic Rates of Exploited and Unexploited Fish Populations: A Signature of Recreational Fisheries Induced Evolution?

    PubMed Central

    Hessenauer, Jan-Michael; Vokoun, Jason C.; Suski, Cory D.; Davis, Justin; Jacobs, Robert; O’Donnell, Eileen

    2015-01-01

    Non-random mortality associated with commercial and recreational fisheries have the potential to cause evolutionary changes in fish populations. Inland recreational fisheries offer unique opportunities for the study of fisheries induced evolution due to the ability to replicate study systems, limited gene flow among populations, and the existence of unexploited reference populations. Experimental research has demonstrated that angling vulnerability is heritable in Largemouth Bass Micropterus salmoides, and is correlated with elevated resting metabolic rates (RMR) and higher fitness. However, whether such differences are present in wild populations is unclear. This study sought to quantify differences in RMR among replicated exploited and unexploited populations of Largemouth Bass. We collected age-0 Largemouth Bass from two Connecticut drinking water reservoirs unexploited by anglers for almost a century, and two exploited lakes, then transported and reared them in the same pond. Field RMR of individuals from each population was quantified using intermittent-flow respirometry. Individuals from unexploited reservoirs had a significantly higher mean RMR (6%) than individuals from exploited populations. These findings are consistent with expectations derived from artificial selection by angling on Largemouth Bass, suggesting that recreational angling may act as an evolutionary force influencing the metabolic rates of fishes in the wild. Reduced RMR as a result of fisheries induced evolution may have ecosystem level effects on energy demand, and be common in exploited recreational populations globally. PMID:26039091

  15. Assessing the tolerance of fish and fish populations to environmental stress: The problems and methods of monitoring

    USGS Publications Warehouse

    Wedemeyer, G.A.; McLeay, D.; Goodyear, C.P.

    1984-01-01

    Environmental stress is an inescapable aspect of life in the aquatic environment. The chemical and physical demands of life underwater impose somewhat rigorous constraints on aquatic species (Smith, 1982a). Superimposed on such demands may be the additional. physiological constraints of particular ecological niches. It is true that aquatic species are adapted to these conditions, but this does not imply the absence of energy drains (Lugo, 1978). For example, thermophilic fishes must still cope physiologically with the demands of high temperatures even though they are adapted to high temperatures per se.

  16. Population Structure and Adaptive Divergence in a High Gene Flow Marine Fish: The Small Yellow Croaker (Larimichthys polyactis).

    PubMed

    Liu, Bing-Jian; Zhang, Bai-Dong; Xue, Dong-Xiu; Gao, Tian-Xiang; Liu, Jin-Xian

    2016-01-01

    The spatial distribution of genetic diversity has been long considered as a key component of policy development for management and conservation of marine fishes. However, unraveling the population genetic structure of migratory fish species is challenging due to high potential for gene flow. Despite the shallow population differentiation revealed by putatively neutral loci, the higher genetic differentiation with panels of putatively adaptive loci could provide greater resolution for stock identification. Here, patterns of population differentiation of small yellow croaker (Larimichthys polyactis) were investigated by genotyping 15 highly polymorphic microsatellites in 337 individuals of 15 geographic populations collected from both spawning and overwintering grounds. Outlier analyses indicated that the locus Lpol03 might be under directional selection, which showed a strong homology with Grid2 gene encoding the glutamate receptor δ2 protein (GluRδ2). Based on Lpol03, two distinct clusters were identified by both STRUCTURE and PCoA analyses, suggesting that there were two overwintering aggregations of L. polyactis. A novel migration pattern was suggested for L. polyactis, which was inconsistent with results of previous studies based on historical fishing yield statistics. These results provided new perspectives on the population genetic structure and migratory routes of L. polyactis, which could have significant implications for sustainable management and utilization of this important fishery resource. PMID:27100462

  17. Population Structure and Adaptive Divergence in a High Gene Flow Marine Fish: The Small Yellow Croaker (Larimichthys polyactis)

    PubMed Central

    Xue, Dong-Xiu; Gao, Tian-Xiang; Liu, Jin-Xian

    2016-01-01

    The spatial distribution of genetic diversity has been long considered as a key component of policy development for management and conservation of marine fishes. However, unraveling the population genetic structure of migratory fish species is challenging due to high potential for gene flow. Despite the shallow population differentiation revealed by putatively neutral loci, the higher genetic differentiation with panels of putatively adaptive loci could provide greater resolution for stock identification. Here, patterns of population differentiation of small yellow croaker (Larimichthys polyactis) were investigated by genotyping 15 highly polymorphic microsatellites in 337 individuals of 15 geographic populations collected from both spawning and overwintering grounds. Outlier analyses indicated that the locus Lpol03 might be under directional selection, which showed a strong homology with Grid2 gene encoding the glutamate receptor δ2 protein (GluRδ2). Based on Lpol03, two distinct clusters were identified by both STRUCTURE and PCoA analyses, suggesting that there were two overwintering aggregations of L. polyactis. A novel migration pattern was suggested for L. polyactis, which was inconsistent with results of previous studies based on historical fishing yield statistics. These results provided new perspectives on the population genetic structure and migratory routes of L. polyactis, which could have significant implications for sustainable management and utilization of this important fishery resource. PMID:27100462

  18. Population genetic structure of the acanthocephalan Acanthosentis cheni in anadromous, freshwater, and landlocked stocks of its fish host, Coilia nasus.

    PubMed

    Song, Rui; Li, Wen X; Wu, Shan G; Zou, Hong; Wang, Gui T

    2014-04-01

    The acanthocephalan Acanthosentis cheni was found in anadromous, freshwater, and landlocked stocks of its fish host, Coilia nasus. To examine the genetic variations of the acanthocephalan among the 3 populations with the adaptation of the host to the freshwater, the genetic structure of the helminth was investigated in anadromous (Zhoushan and Chongming islands, and Anqing), freshwater (Anqing, Ezhou, and Poyang Lake), and landlocked (Tian'ezhou Reserve) populations by sequencing intergenic transcribed spacers (ITS) of the ribosomal RNA coding genes. Low Fst values and high gene flow were found among the 7 populations (Fst = 0.0135, P = 0.2723; Nm = 36.48) and the 3 ecotypes of Acanthosentis cheni (Fst = 0.0178, P = 0.1044; Nm = 27.67). On the other hand, significant genetic differentiation of the C. nasus host populations was detected between the upstream and downstream areas of Xiaogu Mountain (Fst = 0.1961, P = 0.0030; Nm = 2.05), which is the farthest location of spawning migration for C. nasus . However, the migration break of the fish host appeared not to cause significant genetic differentiation of A. cheni populations between the upper and lower reaches of Xiaogu Mountain. Other factors might promote genetic exchange of A. cheni populations such as dispersal of the intermediate host by flooding or other fish species serving as the definitive or paratenic hosts. In Anqing, nucleotide diversity of the acanthocephalan was highest in the freshwater population (0.0038) and lower in the anadromous population (0.0026). This suggested that new mutations may have occurred in the freshwater A. cheni population in Anqing when adapting to a freshwater environment. PMID:24224788

  19. Raw Fish Consuming Behavior Related to Liver Fluke Infection among Populations at Risk of Cholangiocarcinoma in Nakhon Ratchasima Province, Thailand.

    PubMed

    Chavengkun, Wasugree; Kompor, Pontip; Norkaew, Jun; Kujapun, Jirawoot; Pothipim, Mali; Ponphimai, Sukanya; Kaewpitoon, Soraya J; Padchasuwan, Natnapa; Kaewpitoon, Natthawut

    2016-01-01

    Opisthorchiasis is a health problem in rural communities of Thailand, particularly in the northeast and north regions. Therefore, this study aimed to investigate raw fish consuming behavior related to liver fluke infection among the population at risk for opisthorchiasis and cholangiocarcinoma (CCA). A cross-sectional descriptive study was conducted in Meuang Yang district, Nakhon Ratchasima province, northeast Thailand, between June and October 2015. Participants were screened for CCA, and samples who had a high score of CCA risk were purposively selected. A predesigned questionnaire was utilized to collect the data from all participants. X2-test was used for analysis of associations between demographic data and raw fish consumption. The results revealed that participants had past histories of stool examination (33.0%), liver fluke infection (21.0%), praziquantel use (24.0%), raw fish consumption (78.0%), relatives family consuming raw fish (73.0%), and relatives family with CCA (3.0%). Participants consumed several dished related to liver fluke infection, mainly raw fermented fish (13.0%), under smoked catfish (5.00%), raw pickled fish (4.00%), and raw spicy minced fish salad (3.00%). The most common types of cyprinoid fish were Barbodes gonionotus (39%), Hampala dispar (38%), Puntius brevis (37%), Cyclocheilichthys armatus (33%), Puntioplites proctozysron (32%), and Luciosoma bleekeri (30%), respectively. Participants had a low level of knowledge (mean=3.79, SD=0.74), moderate attitude (mean=7.31, SD=7.31) and practice (mean=38.64, SD=6.95) regarding liver fluke prevention and control. Demographic variables like age (>36 years old; X2-test=17.794, p-value=0.001), education (primary school; X2-test=18.952, p-value=0.001), marital status (married; X2-test=12.399, p-value=0.002), and income (<5,000 baht; X2-test=27.757, p-value=0.015) were significantly associated with raw fish consumption. This result indicates that the population had risk consumption for liver

  20. ‘School-mix feedback’: a different way to think about low frequency variability in large mobile fish populations

    NASA Astrophysics Data System (ADS)

    Bakun, Andrew

    A conceptual perspective is introduced which appears to convey substantial explanatory power with respect to some prominent current issues in fisheries ecology, including evident regime shifts in resource productivity and/or in species dominance. Underpinning the proposed perspective are two key ideas. These are the ‘school trap’ concept and the notion of ‘affinities’ to specific ocean features or locations that may characterize individual fish. These two ideas lead to a mechanism, here termed ‘school-mix feedback’, by which mobile fish populations may automatically track low frequency environmental and ecosystem variability and make particularly rapid adaptive adjustments of behaviors and migratory tendencies to the associated changes in conditions. However the mechanism also appears to involve the possibility that a fish population could thereby fall into a short-period analog to an evolutionary feedback trap, from which it may not easily extricate itself without undergoing population collapse. Analogous adaptive responses to geographically-biased fishery exploitation may upset the integrity of naturally-evolved systems and potentially lead to chronic suppression of resource productivity. Possibilities for innovative adaptive management actions are suggested. Both heuristic and real explanatory examples are cited, in most cases dealing with pelagic fish stocks and upwelling ecosystems.

  1. Contrasting Population and Diet Influences on Gut Length of an Omnivorous Tropical Fish, the Trinidadian Guppy (Poecilia reticulata).

    PubMed

    Zandonà, Eugenia; Auer, Sonya K; Kilham, Susan S; Reznick, David N

    2015-01-01

    Phenotypic plasticity is advantageous for organisms that live in variable environments. The digestive system is particularly plastic, responding to changes in diet. Gut length is the result of a trade-off between maximum nutrient absorption and minimum cost for its maintenance and it can be influenced by diet and by evolutionary history. We assessed variation in gut length of Trinidadian guppies (Poecilia reticulata) as a function of diet, season, ontogeny, and local adaptation. Populations of guppies adapted to different predation levels have evolved different life history traits and have different diets. We sampled guppies from sites with low (LP) and high predation (HP) pressure in the Aripo and Guanapo Rivers in Trinidad. We collected fish during both the dry and wet season and assessed their diet and gut length. During the dry season, guppies from HP sites fed mostly on invertebrates, while guppies in the LP sites fed mainly on detritus. During the wet season, the diet of LP and HP populations became very similar. We did not find strong evidence of an ontogenetic diet shift. Gut length was negatively correlated with the proportion of invertebrates in diet across fish from all sites, supporting the hypothesis that guppy digestive systems adapt in length to changes in diet. Population of origin also had an effect on gut length, as HP and LP fish maintained different gut lengths even in the wet season, when their diets were very similar and individuals in both types of populations fed mostly on detritus. Thus, both environment and population of origin influenced guppies gut length, but population of origin seemed to have a stronger effect. Our study also showed that, even in omnivorous fish, gut length adapted to different diets, being more evident when the magnitude of difference between animal and plant material in the diet was very large. PMID:26360601

  2. Contrasting Population and Diet Influences on Gut Length of an Omnivorous Tropical Fish, the Trinidadian Guppy (Poecilia reticulata)

    PubMed Central

    Zandonà, Eugenia; Auer, Sonya K.; Kilham, Susan S.; Reznick, David N.

    2015-01-01

    Phenotypic plasticity is advantageous for organisms that live in variable environments. The digestive system is particularly plastic, responding to changes in diet. Gut length is the result of a trade-off between maximum nutrient absorption and minimum cost for its maintenance and it can be influenced by diet and by evolutionary history. We assessed variation in gut length of Trinidadian guppies (Poecilia reticulata) as a function of diet, season, ontogeny, and local adaptation. Populations of guppies adapted to different predation levels have evolved different life history traits and have different diets. We sampled guppies from sites with low (LP) and high predation (HP) pressure in the Aripo and Guanapo Rivers in Trinidad. We collected fish during both the dry and wet season and assessed their diet and gut length. During the dry season, guppies from HP sites fed mostly on invertebrates, while guppies in the LP sites fed mainly on detritus. During the wet season, the diet of LP and HP populations became very similar. We did not find strong evidence of an ontogenetic diet shift. Gut length was negatively correlated with the proportion of invertebrates in diet across fish from all sites, supporting the hypothesis that guppy digestive systems adapt in length to changes in diet. Population of origin also had an effect on gut length, as HP and LP fish maintained different gut lengths even in the wet season, when their diets were very similar and individuals in both types of populations fed mostly on detritus. Thus, both environment and population of origin influenced guppies gut length, but population of origin seemed to have a stronger effect. Our study also showed that, even in omnivorous fish, gut length adapted to different diets, being more evident when the magnitude of difference between animal and plant material in the diet was very large. PMID:26360601

  3. Response of fish populations to natural channel design restoration in streams of the Catskill Mountains, New York

    USGS Publications Warehouse

    Baldigo, Barry P.; Warren, D.R.; Ernst, A.G.; Mulvihill, C.I.

    2008-01-01

    Many streams and rivers throughout North America have been extensively straightened, widened, and hardened since the middle 1800s, but related effects on aquatic ecosystems have seldom been monitored, described, or published. Beginning in the early 1990s, reach-level restoration efforts began to base projects on natural channel design (NCD) techniques and Rosgen's (1994b, 1996) river classification system in an effort to duplicate or mimic stable reference reach geomorphology. Four reaches in three streams of the Catskill Mountains, New York, were restored from 2000 to 2002 using NCD techniques to decrease bed and bank erosion rates, decrease sediment loads, and improve water quality. The effects of restoration on the health of fish assemblages were assessed through a before-after, control-impact (BACI) study design to quantify the net changes in population and community indices at treatment reaches relative to index changes at unaltered reference reaches from 1999 to 2004. After restoration, community richness and biomass at treatment reaches increased by more than one-third. Changes in fish communities were caused mainly by shifts in dominant species populations; fish community biomass and total fish abundance were generally dominated by daces or daces and sculpins before restoration and by one or more salmonid species after restoration. Density and biomass of eastern blacknose dace Rhinichthys atratulus, longnose dace R. cataractae, and slimy sculpin Cottus cognatus did not change appreciably, whereas net salmonid density and biomass increased substantially after restoration. These changes were driven primarily by large increases in populations of brown trout Salmo trutta. The findings demonstrate that the structure, function, and ultimately the health of resident fish populations and communities can be improved, at least over the short term, through NCD restoration in perturbed streams of the Catskill Mountains. ?? Copyright by the American Fisheries Society

  4. Time trends in fish populations in metropolitan France: insights from national monitoring data.

    PubMed

    Poulet, N; Beaulaton, L; Dembski, S

    2011-12-01

    Using the electrofishing database of the French National Agency for Water and Aquatic Environment (Onema), the time trends of 48 freshwater fish taxa at 590 sites monitored for at least 8 years from 1990 to 2009 were investigated. The results demonstrated that species richness increased steadily from the beginning of the monitoring period. This is congruent with the finding that the number of species displaying a significant increase in spatial distribution or abundance was greater than those showing a significant decrease. Some species, however, had declined both in occurrence and abundance, e.g. tench Tinca tinca, common bream Abramis brama, brown trout Salmo trutta and European eel Anguilla anguilla. The species showing the most spectacular colonization were non-native, e.g. topmouth gudgeon Pseudorasbora parva, wels catfish Silurus glanis and asp Aspius aspius. The time trends in population density were related to the maximal body size, habitat requirement, occurrence and abundance and the status (i.e. native or exotic) but not to the spawning temperature. PMID:22136235

  5. Studies of the limnology, fish populations, and fishery of Turquoise Lake, Colorado - 1979-80

    SciTech Connect

    Nesler, T.P.

    1981-07-01

    Turquoise Lake is one of the primary storage reservoirs in the Fryingpan-Arkansas Water Project and provides supplementary water by conduit to the MT. Elbert Forebay-Twin Lakes system for pump-back storage power generation. The reservoir may be characterized as a dimictic, cold-water lake that is well oxygenated, relatively unbuffed, and slightly acidic. The lake may be classified as oligotrophic on the basis of total dissolved solids, algal nutrients (N-P), and chlorophyll concentrations. Depletion of dissolved oxygen occurs regularly in the hypolimnion during late summer and late winter. Turquoise Lake is limnologically similar to Twin Lakes (Colo.) in most respects. Data contained in this report are useful to those interested in the limnology of high mountain lakes, including physical-chemical parameters, chlorophyll, plankton, and fish populations. Turquoise Lake provides source water to the Mt. Elbert forebay. Thus the baseline data provided here will be helpful in assessing the effects of pumped-storage powerplant operation on the limnology of Twin Lakes, Colo.

  6. A model describing the effect of sex-reversed YY fish in an established wild population: The use of a Trojan Y chromosome to cause extinction of an introduced exotic species.

    PubMed

    Gutierrez, Juan B; Teem, John L

    2006-07-21

    A novel means of inducing extinction of an exotic fish population is proposed using a genetic approach to shift the ratio of male to females within a population. In the proposed strategy, sex-reversed fish containing two Y chromosomes are introduced into a normal fish population. These YY fish result in the production of a disproportionate number of male fish in subsequent generations. Mathematical modeling of the system following introduction of YY fish at a constant rate reveals that female fish decline in numbers over time, leading to eventual extinction of the population. PMID:16406425

  7. Baseline study of the spatio-temporal patterns of reef fish assemblages prior to a major mining project in New Caledonia (South Pacific).

    PubMed

    Chabanet, Pascale; Guillemot, Nicolas; Kulbicki, Michel; Vigliola, Laurent; Sarramegna, Sébastien

    2010-01-01

    From 2008 onwards, the coral reefs of Koné (New Caledonia) will be subjected to a major anthropogenic perturbation linked to development of a nickel mine. Dredging and sediment runoff may directly damage the reef environment whereas job creation should generate a large demographic increase and thus a rise in fishing activities. This study analyzed reef fish assemblages between 2002 and 2007 with a focus on spatio-temporal variability. Our results indicate strong spatial structure of fish assemblages through time. Total species richness, density and biomass were highly variable between years but temporal variations were consistent among biotopes. A remarkable spatio-temporal stability was observed for trophic (mean 4.6% piscivores, 53.1% carnivores, 30.8% herbivores and 11.4% planktivores) and home range structures of species abundance contributions. These results are discussed and compared with others sites of the South Pacific. For monitoring perspectives, some indicators related to expected disturbances are proposed. PMID:20637479

  8. Composition and Relative Abundance of Fish Species in the Lower White Salmon River, Washington, Prior to the Removal of Condit Dam

    USGS Publications Warehouse

    Allen, M. Brady; Connolly, Patrick J.

    2011-01-01

    Information about the composition and relative abundance of fish species was collected by a rotary screw trap and backpack electrofishing in the lower White Salmon River, Washington. The information was collected downstream of Condit Dam, which is at river kilometer (rkm) 5.2, and is proposed for removal in October 2011. A rotary screw trap was installed in the White Salmon River at rkm 1.5 and operated from March through June during 2006-09. All captured fish were identified to species and enumerated. Daily subsets of fish were weighed, measured, and fin clipped for a genetic analysis by the U.S. Fish and Wildlife Service. *Fall Chinook salmon (Oncorhynchus tshawytscha) were captured in the highest numbers (n=18, 640), and were composed of two stocks: tule and upriver bright. Almost all captured fall Chinook salmon were age-0, with only 16 (0.09 percent) being age-1 or older. *Tule fall Chinook salmon, the native stock, generally out-migrated from mid-March through early April. The tule stock was the more abundant fall Chinook salmon subspecies, comprising 85 percent of those captured in the trap. *Upriver bright fall Chinook salmon comprised 15 percent of the Chinook salmon catch and generally out-migrated from late May to early June. *Coho salmon (O. kisutch) and steelhead trout (O. mykiss) were captured by the rotary screw trap in all years. Coho salmon were caught in low numbers (n=661) and 69 percent were age-0 fish. Steelhead were slightly more abundant (n=679) than coho salmon and 84 percent were age-1 or older fish. Trap efficiency estimates varied widely (range, 0-10 percent) by species, fish size, and time of year. However, if we use only the estimates from efficiency tests where more than 300 wild age-0 Chinook salmon were released, there was a mean trapping efficiency of 1.4 percent (n=4, median, 1.3 percent, range, 0.3-2.4 percent) during the tule out-migration period, and a mean trapping efficiency of 0.8 percent (n=2, range, 0.3-1.2 percent) during

  9. Magnetic Properties of Lake Sediments as a Possible Tool to Improve Estimates of Prehistoric Fluctuations in Fish Population

    NASA Astrophysics Data System (ADS)

    Geiss, C. E.; Oleskewicz, M.; West, D.; Post, D. M.

    2010-12-01

    Alewives are small anadromous fish that spend most of their lives in the ocean, but use small coastal lakes as their spawning grounds. Since many of these fish die after spawning they can supply a significant amount of marine derived nutrients to these lacustrine ecosystems. Over the past decades, however, alewife numbers have declined significantly in Connecticut lakes. We studied the magnetic properties of two Connecticut lakes to investigate whether changes in alewife populations are reflected in the sediment magnetic record and could be used to improve the estimates of prehistoric fluctuations in alewife populations. Since the marine derived nitrogen is enriched in δ15N, nitrogen isotope ratios are used as a proxy for anadromous fish population size. Sediment magnetic properties were characterized through measurements of magnetic susceptibility, anhysteretic remanent magnetization, Isothermal remanent magnetization, coercivity parameters, hysteresis looks and Curie-temperature measurements. We used a paired watershed approach utilizing Bride Lake which has a viable alewife population and nearby Uncas Pond which due to the presence of a waterfall cannot receive anadromous fish. Bride Lake shows prehistoric variations in δ15N, which are also reflected in the sediment magnetic properties. Time periods with high δ15N (high marine nutrient input) are characterized by low ARM/IRM ratios and lower S-ratios, indicating intense dissolution of soft ferrimagnetic minerals and a relative increase in coarse ferrimagnets and a shift to higher coercivity titanomagnetite minerals. Uncas Lake does not show this shift in grain size or magnetic coercivity, suggesting that sediment magnetic properties can assist in the reconstruction of prehistoric alewife populations.

  10. Population structure of the fish pathogen Flavobacterium psychrophilum at whole-country and model river levels in Japan.

    PubMed

    Fujiwara-Nagata, Erina; Chantry-Darmon, Céline; Bernardet, Jean-François; Eguchi, Mitsuru; Duchaud, Eric; Nicolas, Pierre

    2013-01-01

    The bacterium Flavobacterium psychrophilum is a serious problem for salmonid farming worldwide. This study investigates by multilocus sequence typing (MLST) the population structure of this pathogen in Japan where it is also a major concern for ayu, a popular game fish related to salmoniforms. A total of 34 isolates collected across the country and 80 isolates sampled in a single model river by electrofishing were genotyped. The data accounting for 15 fish species allowed identifying 35 distinct sequence types (ST) in Japan. These ST are distinct from those reported elsewhere, except for some ST found in rainbow trout and coho salmon, two fish that have been the subject of intensive international trade. The pattern of polymorphism is, however, strikingly similar across geographical scales (model river, Japan, world) in terms of the fraction of molecular variance linked to the fish host (~50%) and of pairwise nucleotide diversity between ST (~5 Kbp(-1)). These observations go against the hypothesis of a recent introduction of F. psychrophilum in Japan. Two findings were made that are important for disease control: 1) at least two independent F. psychrophilum lineages infect ayu and 2) co-infections of the same individual fish by different strains occur. PMID:23682575

  11. Development of a paediatric population pharmacokinetic model for valacyclovir from literature non-compartmental values originating from sparse studies and Bayesian priors: a simulation study.

    PubMed

    Kechagia, Irene-Ariadne; Dokoumetzidis, Aristides

    2015-06-01

    A preliminary population pharmacokinetic (PopPK) model of valacyclovir in children was developed from non-compartmental analysis (NCA) parameter values from literature, including several age groups, combined with Bayesian priors from a PopPK model of acyclovir, the active metabolite of valacyclovir, from literature too. Also a simulation study was carried out to evaluate the performance of various modelling choices related to the estimation of model parameters from NCA parameters originating from sparse PK studies. Assuming a one-compartment model with first order absorption, a mixed effects, meta-analysis approach was utilized which allows accounting the random intergroup variability, the detection of covariates and the application of informative Bayesian priors on the parameters. The conclusions from the simulation study calculating bias and precision for various cases, were that a model which takes explicitly into account the sampling schedule, performs better than a model using the theoretical expressions of calculating the NCA parameters. Also by using the geometric rather than the arithmetic means of NCA parameters, less biased results are obtained. These findings guided the choices for the valacyclovir model, for which informative priors from a PopPK model of acyclovir were applied for some of the parameters, in order to include a richer covariate model for clearance, not supported by the NCA dataset and a value for bioavailability. This preliminary valacyclovir model can be used in simulations to provide dosage recommendations for children of various ages and to help design more efficiently prospective clinical trials. PMID:25821006

  12. Fisheries-induced neutral and adaptive evolution in exploited fish populations and consequences for their adaptive potential

    PubMed Central

    Marty, Lise; Dieckmann, Ulf; Ernande, Bruno

    2015-01-01

    Fishing may induce neutral and adaptive evolution affecting life-history traits, and molecular evidence has shown that neutral genetic diversity has declined in some exploited populations. Here, we theoretically study the interplay between neutral and adaptive evolution caused by fishing. An individual-based eco-genetic model is devised that includes neutral and functional loci in a realistic ecological setting. In line with theoretical expectations, we find that fishing induces evolution towards slow growth, early maturation at small size and higher reproductive investment. We show, first, that the choice of genetic model (based on either quantitative genetics or gametic inheritance) influences the evolutionary recovery of traits after fishing ceases. Second, we analyse the influence of three factors possibly involved in the lack of evolutionary recovery: the strength of selection, the effect of genetic drift and the loss of adaptive potential. We find that evolutionary recovery is hampered by an association of weak selection differentials with reduced additive genetic variances. Third, the contribution of fisheries-induced selection to the erosion of functional genetic diversity clearly dominates that of genetic drift only for the traits related to maturation. Together, our results highlight the importance of taking into account population genetic variability in predictions of eco-evolutionary dynamics. PMID:25667602

  13. Dietary Oily Fish Intake and Blood Pressure Levels: A Population-Based Study.

    PubMed

    Del Brutto, Oscar H; Mera, Robertino M; Gillman, Jennifer; Castillo, Pablo R; Zambrano, Mauricio; Ha, Jung-Eun

    2016-04-01

    The effect of fish consumption on blood pressure is controversial. The authors measured blood pressure and calculated oily fish servings per week in 677 community-dwellers aged 40 years and older living in rural coastal Ecuador. Using regression models with linear splines, the authors evaluated whether dietary fish intake was related to blood pressure levels, after adjusting for relevant confounders. Mean oily fish consumption was 9.1±5.6 servings per week. There was a nonlinear relationship between systolic pressure and fish servings. In the group of individuals consuming up to five servings per week, each serving significantly reduced systolic pressure by 2.3 mm Hg (P=.020). Any extra serving provided no further effects. The study shows an inverse relationship between oily fish consumption and systolic pressure. Currently recommended amounts of dietary oily fish intake per week (1-2 servings) might be insufficient to exert beneficial effects of fish in the control of blood pressure. PMID:26395549

  14. Computer program for sample sizes required to determine disease incidence in fish populations

    USGS Publications Warehouse

    Ossiander, Frank J.; Wedemeyer, Gary

    1973-01-01

    A computer program is described for generating the sample size tables required in fish hatchery disease inspection and certification. The program was designed to aid in detection of infectious pancreatic necrosis (IPN) in salmonids, but it is applicable to any fish disease inspection when the sampling plan follows the hypergeometric distribution.

  15. Variation in Rapa Nui (Easter Island) land use indicates production and population peaks prior to European contact

    PubMed Central

    Stevenson, Christopher M.; Puleston, Cedric O.; Vitousek, Peter M.; Chadwick, Oliver A.; Haoa, Sonia; Ladefoged, Thegn N.

    2015-01-01

    Many researchers believe that prehistoric Rapa Nui society collapsed because of centuries of unchecked population growth within a fragile environment. Recently, the notion of societal collapse has been questioned with the suggestion that extreme societal and demographic change occurred only after European contact in AD 1722. Establishing the veracity of demographic dynamics has been hindered by the lack of empirical evidence and the inability to establish a precise chronological framework. We use chronometric dates from hydrated obsidian artifacts recovered from habitation sites in regional study areas to evaluate regional land-use within Rapa Nui. The analysis suggests region-specific dynamics including precontact land use decline in some near-coastal and upland areas and postcontact increases and subsequent declines in other coastal locations. These temporal land-use patterns correlate with rainfall variation and soil quality, with poorer environmental locations declining earlier. This analysis confirms that the intensity of land use decreased substantially in some areas of the island before European contact. PMID:25561523

  16. Variation in Rapa Nui (Easter Island) land use indicates production and population peaks prior to European contact.

    PubMed

    Stevenson, Christopher M; Puleston, Cedric O; Vitousek, Peter M; Chadwick, Oliver A; Haoa, Sonia; Ladefoged, Thegn N

    2015-01-27

    Many researchers believe that prehistoric Rapa Nui society collapsed because of centuries of unchecked population growth within a fragile environment. Recently, the notion of societal collapse has been questioned with the suggestion that extreme societal and demographic change occurred only after European contact in AD 1722. Establishing the veracity of demographic dynamics has been hindered by the lack of empirical evidence and the inability to establish a precise chronological framework. We use chronometric dates from hydrated obsidian artifacts recovered from habitation sites in regional study areas to evaluate regional land-use within Rapa Nui. The analysis suggests region-specific dynamics including precontact land use decline in some near-coastal and upland areas and postcontact increases and subsequent declines in other coastal locations. These temporal land-use patterns correlate with rainfall variation and soil quality, with poorer environmental locations declining earlier. This analysis confirms that the intensity of land use decreased substantially in some areas of the island before European contact. PMID:25561523

  17. Population sizes and growth pressure responses of intestinal microfloras of deep-sea fish retrieved from the abyssal zone.

    PubMed

    Yano, Y; Nakayama, A; Yoshida, K

    1995-12-01

    The intestinal floras of seven deep-sea fish retrieved at depths of from 3,200 to 5,900 m were examined for population sizes and growth responses to pressure. Large populations of culturable bacteria, ranging from 1.1 x 10(sup6) to 3.6 x 10(sup8) cells per ml of contents, were detected when samples were incubated at conditions characteristic of those of the deep sea. Culturable cell counts at in situ pressures were greater than those at atmospheric pressure in all samples. Most of the strains isolated by the spread-plating method at atmospheric pressure later proved barophilic. Barophilic bacteria were the predominant inhabitants of the abyssal fish intestines. PMID:16535199

  18. Population Variation in the Life History of a Land Fish, Alticus arnoldorum, and the Effects of Predation and Density

    PubMed Central

    Platt, Edward R. M.; Ord, Terry J.

    2015-01-01

    Life history variation can often reflect differences in age-specific mortality within populations, with the general expectation that reproduction should be shifted away from ages experiencing increased mortality. Investigators of life history in vertebrates frequently focus on the impact of predation, but there is increasing evidence that predation may have unexpected impacts on population density that in turn prompt unexpected changes in life history. There are also other reasons why density might impact life history independently of predation or mortality more generally. We investigated the consequences of predation and density on life history variation among populations of the Pacific leaping blenny, Alticus arnoldorum. This fish from the island of Guam spends its adult life out of the water on rocks in the splash zone, where it is vulnerable to predation and can be expected to be sensitive to changes in population density that impact resource availability. We found populations invested more in reproduction as predation decreased, while growth rate varied primarily in response to population density. These differences in life history among populations are likely plastic given the extensive gene flow among populations revealed by a previous study. The influence of predation and density on life history was unlikely to have operated independently of each other, with predation rate tending to be associated with reduced population densities. Taken together, our results suggest predation and density can have complex influences on life history, and that plastic life history traits could allow populations to persist in new or rapidly changing environments. PMID:26398191

  19. Population Variation in the Life History of a Land Fish, Alticus arnoldorum, and the Effects of Predation and Density.

    PubMed

    Platt, Edward R M; Ord, Terry J

    2015-01-01

    Life history variation can often reflect differences in age-specific mortality within populations, with the general expectation that reproduction should be shifted away from ages experiencing increased mortality. Investigators of life history in vertebrates frequently focus on the impact of predation, but there is increasing evidence that predation may have unexpected impacts on population density that in turn prompt unexpected changes in life history. There are also other reasons why density might impact life history independently of predation or mortality more generally. We investigated the consequences of predation and density on life history variation among populations of the Pacific leaping blenny, Alticus arnoldorum. This fish from the island of Guam spends its adult life out of the water on rocks in the splash zone, where it is vulnerable to predation and can be expected to be sensitive to changes in population density that impact resource availability. We found populations invested more in reproduction as predation decreased, while growth rate varied primarily in response to population density. These differences in life history among populations are likely plastic given the extensive gene flow among populations revealed by a previous study. The influence of predation and density on life history was unlikely to have operated independently of each other, with predation rate tending to be associated with reduced population densities. Taken together, our results suggest predation and density can have complex influences on life history, and that plastic life history traits could allow populations to persist in new or rapidly changing environments. PMID:26398191

  20. Fish intake and breastfeeding time are associated with serum concentrations of organochlorines in a Swedish population.

    PubMed

    Bjermo, Helena; Darnerud, Per Ola; Lignell, Sanna; Pearson, Monika; Rantakokko, Panu; Nälsén, Cecilia; Enghardt Barbieri, Heléne; Kiviranta, Hannu; Lindroos, Anna Karin; Glynn, Anders

    2013-01-01

    Persistent organic pollutants (POPs) exert harmful effects on cognitive, endocrine and immune functions and bioaccumulate in the environment and human tissues. The aim of this study was to investigate the body burden of several POPs in the adult population (n=246) and their association to diet and other lifestyle factors in a Swedish national survey. Serum concentrations of several polychlorinated biphenyls (PCBs), and the pesticides hexachlorobenzene (HCB), β-hexachlorocyclohexane (β-HCH), chlordane compounds and dichlorodiphenyldichloroethylene (DDE) were determined by liquid-liquid extraction, silica column cleanup and gas chromatography high resolution mass spectrometry. Diet was assessed using 4-day food records and complementary dietary and lifestyle factors by questionnaire. Fish intake was additionally assessed by plasma fatty acid composition. Clustering of the compounds revealed that PCBs were separated into two clusters, one including low-chlorinated PCB 28 and 52, and the other high-chlorinated mono- and di-ortho PCBs, suggesting similarities and dissimilarities in exposure sources and possibly also toxicokinetics. Men had 24% and 32% higher levels of PCB 138-180 and chlordane compounds, respectively, compared with women. This may partly be explained by elimination of the POPs among women reporting a history of breastfeeding. The proportion of very long-chain n-3 fatty acids in plasma were positively correlated with the pollutants: r=0.24 (PCB 28), r=0.33 (PCB 118), r=0.35 (PCB 138-180), r=0.29 (HCB), r=0.18 (β-HCH), r=0.34 (chlordane compounds), r=0.34 (p,p'-DDE), p≤0.005. Individuals consuming fatty Baltic fish≥1 time per months had 45% higher serum levels of PCB 118 compared with non-consumers. Levels of PCB 28 were associated with the age of the residential building. To conclude, the population-distributed approach of surveying dietary habits, lifestyle factors and POP body burdens, made it possible to identify personal characteristics

  1. Importance of floodplain connectivity to fish populations in the Apalachicola River, Florida

    USGS Publications Warehouse

    Burgess, O.T.; Pine, William E., III; Walsh, S.J.

    2013-01-01

    Floodplain habitats provide critical spawning and rearing habitats for many large-river fishes. The paradigm that floodplains are essential habitats is often a key reason for restoring altered rivers to natural flow regimes. However, few studies have documented spatial and temporal utilization of floodplain habitats by adult fish of sport or commercial management interest or assessed obligatory access to floodplain habitats for species' persistence. In this study, we applied telemetry techniques to examine adult fish movements between floodplain and mainstem habitats, paired with intensive light trap sampling of larval fish in these same habitats, to assess the relationships between riverine flows and fish movement and spawning patterns in restored and unmodified floodplain distributaries of the Apalachicola River, Florida. Our intent is to inform resource managers on the relationships between the timing, magnitude and duration of flow events and fish spawning as part of river management actions. Our results demonstrate spawning by all study species in floodplain and mainstem river habitat types, apparent migratory movements of some species between these habitats, and distinct spawning events for each study species on the basis of fish movement patterns and light trap catches. Additionally, Micropterus spp., Lepomis spp. and, to a lesser degree, Minytrema melanops used floodplain channel habitat that was experimentally reconnected to the mainstem within a few weeks of completing the restoration. This result is of interest to managers assessing restoration activities to reconnect these habitats as part of riverine restoration programmes globally.

  2. Modeling responses of large-river fish populations to global climate change through downscaling and incorporation of predictive uncertainty

    USGS Publications Warehouse

    Wildhaber, Mark L.; Wikle, Christopher K.; Anderson, Christopher J.; Franz, Kristie J.; Moran, Edward H.; Dey, Rima

    2012-01-01

    Climate change operates over a broad range of spatial and temporal scales. Understanding its effects on ecosystems requires multi-scale models. For understanding effects on fish populations of riverine ecosystems, climate predicted by coarse-resolution Global Climate Models must be downscaled to Regional Climate Models to watersheds to river hydrology to population response. An additional challenge is quantifying sources of uncertainty given the highly nonlinear nature of interactions between climate variables and community level processes. We present a modeling approach for understanding and accomodating uncertainty by applying multi-scale climate models and a hierarchical Bayesian modeling framework to Midwest fish population dynamics and by linking models for system components together by formal rules of probability. The proposed hierarchical modeling approach will account for sources of uncertainty in forecasts of community or population response. The goal is to evaluate the potential distributional changes in an ecological system, given distributional changes implied by a series of linked climate and system models under various emissions/use scenarios. This understanding will aid evaluation of management options for coping with global climate change. In our initial analyses, we found that predicted pallid sturgeon population responses were dependent on the climate scenario considered.

  3. EFFECTS OF SEASONAL AND WATER QUALITY PARAMETERS ON OYSTERS (CRASSOSTREA VIRGINICA) AND ASSOCIATED FISH POPULATIONS.

    EPA Science Inventory

    Influence of water quality and seasonal changes on disease prevalence and intensity of Perkinsus marinus, gonadal condition, recruitment potential, growth of caged juvenile oysters, and habitat suitability of reefs for fishes and macrobenthic invertebrates were measured in Callos...

  4. ASSESSING THE EFFECTS OF HYPOXIA ON FISH POPULATION ECOLOGY USING ELEMENTS AND ISOTOPES

    EPA Science Inventory

    Linking hypoxic exposure to trophic dynamics of Atlantic croaker, an abundant fish and integral component in Gulf of Mexico food webs, will provide information on ecosystem structure and functioning in response to seasonal hypoxia. Additionally, validating a natural permane...

  5. Reduced Spill at Hydropower Dams: Opportunities for More Generation and Increased Fish Population

    SciTech Connect

    Coutant, Charles C; Mann, Roger; Sale, Michael J

    2006-09-01

    This report indicates that reduction of managed spill at hydropower dams can speed implementation of technologies for fish protection and achieve economic goals. Spill of water over spillways is managed in the Columbia River basin to assist downstream-migrating juvenile salmon, and is generally believed to be the most similar to natural migration, benign and effective passage route; other routes include turbines, intake screens with bypasses, and surface bypasses. However, this belief may be misguided, because spill is becoming recognized as less than natural, with deep intakes below normal migration depths, and likely causing physical damages from severe shear on spillways, high turbulence in tail waters, and collisions with baffle blocks that lead to disorientation and predation. Some spillways induce mortalities comparable to turbines. Spill is expensive in lost generation, and controversial. Fish-passage research is leading to more fish-friendly turbines, screens and bypasses that are more effective and less damaging, and surface bypasses that offer passage of more fish per unit water volume than does spill (leaving more water for generation). Analyses by independent economists demonstrated that goals of increased fish survival over the long term and net gain to the economy can be obtained by selectively reducing spill and diverting some of the income from added power generation to research, development, and installation of fish-passage technologies. Such a plan would selectively reduce spill when and where least damaging to fish, increase electricity generation using the water not spilled and use innovative financing to direct monetary gains to improving fish passage.

  6. Influence of Habitat Modifications on Habitat Composition and Anadromous Salmonid Populations in Fish Creek, Oregon, 1983-1988 Annual Report.

    SciTech Connect

    Reeves, Gordon H.; Everest, Fred H.; Hohler, David B.

    1990-05-01

    Modification of degraded habitats to increase populations of anadromous salmonids is a major focus of management agencies throughout the Pacific Northwest. Millions of dollars are spent annually on such efforts. Inherent in implementing habitat improvements is the need for quantitative evaluation of the biological and physical effects of such work. Reeves et al. (in press), however, noted that such evaluations are rare, making it difficult to assess the true results of habitat work. While it is not economically possible to thoroughly evaluate every habitat project, it is essential that intensive evaluations be done on selected representative projects. One such evaluation program has been underway since 1982 on Fish Creek, a tributary of the Clackamas River near Estacada, OR. Habitat modification has been done by the USDA Forest Service, Estacada Ranger District, Mt. Hood National Forest with funding provided in part by the Bonneville Power Administration (BPA). The USDA Forest Service, Anadromous Fish Habitat Research Unit, Pacific Northwest Research Station (PNW), Corvallis, OR is charged with: (1) evaluating the biological and physical responses to habitat modifications on a basin scale; and (2) developing a cost-benefit analysis of the program. Preliminary results have been reported in a series of annual publications, Everest and Sedell 1983, 1984 and Everest et al. 1985, 1986, 1987, 1988. The objectives of this paper are to: (1) report 1988 observations of biological and physical changes in habitat, salmonid populations, and smolt production in Fish Creek, and (2) examine preliminary trends in fish habitat and populations related to habitat improvement over the period 1983-1988. We have prefaced the trends in the latter objective as preliminary because we believe it could take a minimum of 10 years before the full biological and physical responses to habitat work are realized. We therefore urge caution in interpreting these preliminary results.

  7. Little Polymorphism at the K13 Propeller Locus in Worldwide Plasmodium falciparum Populations Prior to the Introduction of Artemisinin Combination Therapies.

    PubMed

    Mita, Toshihiro; Culleton, Richard; Takahashi, Nobuyuki; Nakamura, Masatoshi; Tsukahara, Takahiro; Hunja, Carol W; Win, Zin Zayar; Htike, Wah Win; Marma, Aung S; Dysoley, Lek; Ndounga, Mathieu; Dzodzomenyo, Mawuli; Akhwale, Willis S; Kobayashi, Jun; Uemura, Haruki; Kaneko, Akira; Hombhanje, Francis; Ferreira, Marcelo U; Björkman, Anders; Endo, Hiroyoshi; Ohashi, Jun

    2016-06-01

    The emergence and spread of artemisinin-resistant Plasmodium falciparum is of huge concern for the global effort toward malaria control and elimination. Artemisinin resistance, defined as a delayed time to parasite clearance following administration of artemisinin, is associated with mutations in the Pfkelch13 gene of resistant parasites. To date, as many as 60 nonsynonymous mutations have been identified in this gene, but whether these mutations have been selected by artemisinin usage or merely reflect natural polymorphism independent of selection is currently unknown. To clarify this, we sequenced the Pfkelch13 propeller domain in 581 isolates collected before (420 isolates) and after (161 isolates) the implementation of artemisinin combination therapies (ACTs), from various regions of endemicity worldwide. Nonsynonymous mutations were observed in 1% of parasites isolated prior to the introduction of ACTs. Frequencies of mutant isolates, nucleotide diversity, and haplotype diversity were significantly higher in the parasites isolated from populations exposed to artemisinin than in those from populations that had not been exposed to the drug. In the artemisinin-exposed population, a significant excess of dN compared to dS was observed, suggesting the presence of positive selection. In contrast, pairwise comparison of dN and dS and the McDonald and Kreitman test indicate that purifying selection acts on the Pfkelch13 propeller domain in populations not exposed to ACTs. These population genetic analyses reveal a low baseline of Pfkelch13 polymorphism, probably due to purifying selection in the absence of artemisinin selection. In contrast, various Pfkelch13 mutations have been selected under artemisinin pressure. PMID:27001814

  8. Linking temporal changes in the demographic structure and individual growth to the decline in the population of a tropical fish

    NASA Astrophysics Data System (ADS)

    Sirot, Charlotte; Darnaude, Audrey M.; Guilhaumon, François; Ramos-Miranda, Julia; Flores-Hernandez, Domingo; Panfili, Jacques

    2015-11-01

    The exceptional biodiversity and productivity of tropical coastal lagoons can only be preserved by identifying the causes for the decline in the populations living in these vulnerable ecosystems. The Terminos lagoon in Mexico provided an opportunity for studying this issue as some of its fish populations, in particular the Silver Perch (Bairdiella chrysoura), have declined significantly since the 1980s. Fish sampling campaigns carried out over the whole lagoon area in 1979-81 and again in 2006-2011 revealed the mechanisms which may have been responsible for this decline. Based on biometrical data for 295 juveniles and adults from the two periods and on somatic growth derived from 173 otoliths, a study of the temporal changes in the demographic structure and life history traits (individual growth and body condition) made it possible to distinguish the causes of the decline in the B. chrysoura population. Growth models for the lagoon in 1980-1981 and 2006-2011 showed no significant change in the growth parameters of the population over the last 30 years with a logistic model giving an accurate estimate (R2 = 0.66) of the size-at-age for both periods. The decline in the B. chrysoura population could not be explained by an overall decrease in individual size and condition in the lagoon, the average standard length (SL) and Fulton index (FI) having increased slightly since 1980-1981 (4.6 mm and 0.02 for juveniles and 5.42 mm and 0.07 for adults). However, the size structure of the population in the lagoon has changed, with a significant shift in the size distribution of juveniles with a marked reduction in the proportion of juveniles ≤ 60 mm in the captures (90.9% fewer than in 1980-1981). As the otolith growth rate of fish during the first 4 months also decreased significantly between the two sampling periods (-15%), it is suggested that the main reason for the decline in the abundance and biomass of B. chrysoura within this system may be that its habitats are less

  9. Episodic acidification of small streams in the northeastern united states: Effects on fish populations

    USGS Publications Warehouse

    Baker, J.P.; Van Sickle, J.; Gagen, C.J.; DeWalle, David R.; Sharpe, W.E.; Carline, R.F.; Baldigo, Barry P.; Murdoch, Peter S.; Bath, D.W.; Kretser, W.A.; Simonin, H.A.; Wigington, P.J., Jr.

    1996-01-01

    As part of the Episodic Response Project (ERP), we studied the effects of episodic acidification on fish in 13 small streams in the northeastern United States: four streams in the Adirondack region of New York, four streams in the Catskills, New York, and five streams in the northern Appalachian Plateau, Pennsylvania. In situ bioassays with brook trout (Salvelinus fontinalis) and a forage fish species (blacknose dace (Rhinichthys atratulus], mottled sculpin (Cottus bairdi), or slimy sculpin (Cottus cognatus), depending on the region) measured direct toxicity. Movements of individual brook trout, in relation to stream chemistry, were monitored using radiotelemetry. Electrofishing surveys assessed fish community status and the density and biomass of brook trout in each stream. During low flow, all streams except one had chemical conditions considered suitable for the survival and reproduction of most fish species (median pH 6.0-7.2 during low flow; inorganic Al 100-200 ??g/L. We conclude that episodic acidification can have long-term effects on fish communities in small streams.

  10. Assessing power of large river fish monitoring programs to detect population changes: the Missouri River sturgeon example

    USGS Publications Warehouse

    Wildhaber, M.L.; Holan, S.H.; Bryan, J.L.; Gladish, D.W.; Ellersieck, M.

    2011-01-01

    In 2003, the US Army Corps of Engineers initiated the Pallid Sturgeon Population Assessment Program (PSPAP) to monitor pallid sturgeon and the fish community of the Missouri River. The power analysis of PSPAP presented here was conducted to guide sampling design and effort decisions. The PSPAP sampling design has a nested structure with multiple gear subsamples within a river bend. Power analyses were based on a normal linear mixed model, using a mixed cell means approach, with variance estimates from the original data. It was found that, at current effort levels, at least 20 years for pallid and 10 years for shovelnose sturgeon is needed to detect a 5% annual decline. Modified bootstrap simulations suggest power estimates from the original data are conservative due to excessive zero fish counts. In general, the approach presented is applicable to a wide array of animal monitoring programs.

  11. Using dense locality sampling resolves the subtle genetic population structure of the dispersive fish species Plecoglossus altivelis.

    PubMed

    Takeshima, Hirohiko; Iguchi, Kei'ichiro; Hashiguchi, Yasuyuki; Nishida, Mutsumi

    2016-07-01

    In dispersive species with continuous distributions, genetic differentiation between local populations is often absent or subtle and thus difficult to detect. To incorporate such subtle differentiation into management plans, it may be essential to analyse many samples from many localities using adequate numbers of high-resolution genetic markers. Here, we evaluated the usefulness of dense locality sampling in resolving genetic population structure in the ayu (Plecoglossus altivelis), a dispersive fish important in Japanese inland fisheries. Genetic variability in, and differentiation between, ayu populations around the Japan-Ryukyu Archipelago were investigated in 4746 individuals collected from 120 localities by genotyping 12 microsatellite markers. These individuals represented the two subspecies of ayu, namely the Ryukyuan subspecies (Plecoglossus altivelis ryukyuensis) and both amphidromous and landlocked forms of the nominotypical subspecies (P. a. altivelis) along the archipelago. We successfully detected an absence of genetic differentiation within the landlocked form and subtle but significant differentiation and clear geographic patterns of genetic variation among populations of the amphidromous form, which had been considered genetically homogeneous. This suggests that dense locality sampling effectively resolves subtle differences in genetic population structure, reducing stochastic deviation in the detection of genetic differentiation and geographic patterns in local populations of this dispersive species. Resampling analyses based on empirical data sets clearly demonstrate the effectiveness of increasing the number of locality samples for stable and reliable estimations of genetic fixation indices. The genetic population structure observed within the amphidromous form provides useful information for identifying management or conservation units in ayu. PMID:27085501

  12. Drought survival is a threshold function of habitat size and population density in a fish metapopulation.

    PubMed

    White, Richard S A; McHugh, Peter A; McIntosh, Angus R

    2016-10-01

    Because smaller habitats dry more frequently and severely during droughts, habitat size is likely a key driver of survival in populations during climate change and associated increased extreme drought frequency. Here, we show that survival in populations during droughts is a threshold function of habitat size driven by an interaction with population density in metapopulations of the forest pool dwelling fish, Neochanna apoda. A mark-recapture study involving 830 N. apoda individuals during a one-in-seventy-year extreme drought revealed that survival during droughts was high for populations occupying pools deeper than 139 mm, but declined steeply in shallower pools. This threshold was caused by an interaction between increasing population density and drought magnitude associated with decreasing habitat size, which acted synergistically to increase physiological stress and mortality. This confirmed two long-held hypotheses, firstly concerning the interactive role of population density and physiological stress, herein driven by habitat size, and secondly, the occurrence of drought survival thresholds. Our results demonstrate how survival in populations during droughts will depend strongly on habitat size and highlight that minimum habitat size thresholds will likely be required to maximize survival as the frequency and intensity of droughts are projected to increase as a result of global climate change. PMID:26929393

  13. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish

    PubMed Central

    Spivakov, Mikhail; Auer, Thomas O.; Peravali, Ravindra; Dunham, Ian; Dolle, Dirk; Fujiyama, Asao; Toyoda, Atsushi; Aizu, Tomoyuki; Minakuchi, Yohei; Loosli, Felix; Naruse, Kiyoshi; Birney, Ewan; Wittbrodt, Joachim

    2014-01-01

    Oryzias latipes (medaka) has been established as a vertebrate genetic model for more than a century and recently has been rediscovered outside its native Japan. The power of new sequencing methods now makes it possible to reinvigorate medaka genetics, in particular by establishing a near-isogenic panel derived from a single wild population. Here we characterize the genomes of wild medaka catches obtained from a single Southern Japanese population in Kiyosu as a precursor for the establishment of a near-isogenic panel of wild lines. The population is free of significant detrimental population structure and has advantageous linkage disequilibrium properties suitable for the establishment of the proposed panel. Analysis of morphometric traits in five representative inbred strains suggests phenotypic mapping will be feasible in the panel. In addition, high-throughput genome sequencing of these medaka strains confirms their evolutionary relationships on lines of geographic separation and provides further evidence that there has been little significant interbreeding between the Southern and Northern medaka population since the Southern/Northern population split. The sequence data suggest that the Southern Japanese medaka existed as a larger older population that went through a relatively recent bottleneck approximately 10,000 years ago. In addition, we detect patterns of recent positive selection in the Southern population. These data indicate that the genetic structure of the Kiyosu medaka samples is suitable for the establishment of a vertebrate near-isogenic panel and therefore inbreeding of 200 lines based on this population has commenced. Progress of this project can be tracked at http://www.ebi.ac.uk/birney-srv/medaka-ref-panel. PMID:24408034

  14. [Discrimination of interspecific hybrids in natural populations of Amur sturgeon fishes using multilocus RAPD-PCR markers].

    PubMed

    Chelomina, G N; Rozhkovan, K V; Ivanov, S A

    2008-01-01

    RAPD-PCR analysis of 46 individuals of sturgeons from Amur River has been carried out. Genetic status of Amur sturgeon Acipenser schrenckii Brandt, 1869 and kaluga Huso dauricus Georgi, 1775 native populations has been estimated. Genetic evidences of hybrid origin for two phenotypical hybrids were obtained; estimations of genetic distances between species and hybrids appeared to be at interspecific level. The exact test for differentiation of populations (Exact test) and multidimensional scaling (MDS) analysis were estimated to be the most effective for species and hybrid discrimination, respectively. According to data obtained populations of sturgeon fishes which inhabit Amur River maintained an essential level of genetic variability; the presence of hybrids is regarded as one of risk factors. Multilocus RAPD-PCR markers admit as the convenient and reliable tool for genetic monitoring of Amur River sturgeons to preserve their gene pool. PMID:19140442

  15. Novel mobbing strategies of a fish population against a sessile annelid predator.

    PubMed

    Lachat, Jose; Haag-Wackernagel, Daniel

    2016-01-01

    When searching for food, foraging fishes expose themselves to hidden predators. The strategies that maximize the survival of foraging fishes are not well understood. Here, we describe a novel type of mobbing behaviour displayed by foraging Scolopsis affinis. The fish direct sharp water jets towards the hidden sessile annelid predator Eunice aphroditois (Bobbit worm). We recognized two different behavioural roles for mobbers (i.e., initiator and subsequent participants). The first individual to exhibit behaviour indicating the discovery of the Bobbit directed, absolutely and per time unit, more water jets than the subsequent individuals that joined the mobbing. We found evidence that the mobbing impacted the behaviour of the Bobbit, e.g., by inducing retraction. S. affinis individuals either mob alone or form mobbing groups. We speculate that this behaviour may provide social benefits for its conspecifics by securing foraging territories for S. affinis. Our results reveal a sophisticated and complex behavioural strategy to protect against a hidden predator. PMID:27615670

  16. Population and osmoregulatory responses of a euryhaline fish to extreme salinity fluctuations in coastal lagoons of the Coorong, Australia

    NASA Astrophysics Data System (ADS)

    Wedderburn, Scotte D.; Bailey, Colin P.; Delean, Steven; Paton, David C.

    2016-01-01

    River flows and salinity are key factors structuring fish assemblages in estuaries. The osmoregulatory ability of a fish determines its capacity to tolerate rising salt levels when dispersal is unfeasible. Estuarine fishes can tolerate minor fluctuations in salinity, but a relatively small number of species in a few families can inhabit extreme hypersaline waters. The Murray-Darling Basin drains an extensive area of south-eastern Australia and river flows end at the mouth of the River Murray. The system is characterized by erratic rainfall and highly variable flows which have been reduced by intensive river regulation and water extraction. The Coorong is a coastal lagoon system extending some 110 km south-eastwards from the mouth. It is an inverted estuary with a salinity gradient that typically ranges from estuarine to triple that of sea water. Hypersalinity in the southern region suits a select suite of biota, including the smallmouth hardyhead Atherinosoma microstoma - a small-bodied, euryhaline fish with an annual life cycle. The population response of A. microstoma in the Coorong was examined during a period of considerable hydrological variation and extreme salinity fluctuations (2001-2014), and the findings were related to its osmoregulatory ability. Most notably, the species was extirpated from over 50% of its range during four continuous years without river flows when salinities exceeded 120 (2007-2010). These salinities exceeded the osmoregulatory ability of A. microstoma. Substantial river flows that reached the Coorong in late 2010 and continued into 2011 led salinities to fall below 100 throughout the Coorong by January 2012. Subsequently, A. microstoma recovered to its former range by January 2012. The findings show that the consequences of prolonged periods of insufficient river flows to temperate inverted estuaries will include substantial declines in the range of highly euryhaline fishes, which also may have wider ecological consequences.

  17. Topographic and Genetic Markers of Landscape Change: Landslides and Isolated Fish Populations Demarcating Basin-wide Erosional Waves Above the Cascadia Subduction Zone

    NASA Astrophysics Data System (ADS)

    Lyons, N. J.; Wegmann, K. W.; Raley, M.

    2013-12-01

    A cascade of geomorphic and biotic responses to river incision can be modulated by glacial-interglacial cycles. Prior investigations have revealed the complex fluvial responses to climate and tectonic uplift above the Cascadia margin. Reduced sediment supply or increased stream discharge during interglacials is responsible for incision and preservation of terraces, whose basal strath unconformities were formed during glacial periods. A river incision record is provided by a flight of well-preserved stream terraces in the Clearwater River basin of the Olympic Mountains. Using numerical modeling and field observations, we will present analyses of stream topography and geometry, knickpoint location and age, and landslide frequency to assess hillslope and stream coupling in response to millennium-scale stream incision in the Clearwater River basin. We hypothesize that incision into a late Pleistocene terrace initiated a wave of erosion that is now expressed as increased landslide frequency on hillslopes, and as knickpoints on streams. Hillslopes are steepened to critical landslide thresholds as the erosional wave propagates through the basin. Aerial photographs and landslide inventories reveal that landslide scars cluster along the lower hillslopes below a network of stream knickpoints present in many Clearwater tributaries. Also within the premise of this hypothesis, aquatic organisms would become isolated above knickpoints once waterfalls reach an impassable height. Knickpoints then block upstream passage of fish, which instigates genetic drift and decreases population genetic variation. Introduction of alleles--alternative forms of a gene--to fish populations upstream of knickpoints is then limited to mutations, which along with the genetic mutation rate of a species, operates as a 'molecular clock' that records the time since knickpoint formation. We collected and analyzed DNA from Cutthroat trout (Oncorhynchus clarkii) specimens above knickpoints to assess the

  18. PCDDs, PCDFs and PCBs in farmed fish produced in Greece: Levels and human population exposure assessment.

    PubMed

    Costopoulou, Danae; Vassiliadou, Irene; Leondiadis, Leondios

    2016-03-01

    Fish is among the essential components of Mediterranean diet and has beneficial effects on human health. Farmed fish is an affordable alternative to wild fish and a significant food export product for Greece. Published studies worldwide have reported significant levels of environmental pollutants in fish tissues. Especially for PCDDs/Fs and PCBs, the studies suggest that the most important contribution to human dietary intake is from fish and seafood. In the present study, we investigate the levels of PCDDs/Fs, dioxin-like and non dioxin-like PCBs in the most common farmed fish species produced in Greece i.e. sea bass, sea bream and rainbow trout. These species are widely consumed in Greece and are also exported to many countries worldwide. The mean levels found were WHO-PCDD/F-TEQ: 0.22 pg g(-1) wet weight (w.w.), WHO-PCDD/F-PCB-TEQ: 0.88 pg g(-1) w.w. for sea bream, WHO-PCDD/F-TEQ: 0.13 pg g(-1) w.w., WHO-PCDD/F-PCB-TEQ: 0.68 pg g(-1) w.w. for sea bass and WHO-PCDD/F-TEQ: 0.10 pg g(-1) w.w., WHO-PCDD/F-PCB-TEQ: 0.43 pg g(-1) w.w. for rainbow trout. For non dioxin-like PCBs, mean sum values found were 8.02 ng g(-1) w.w. for sea bream, 5.24 ng g(-1) w.w. for sea bass and 2.90 ng g(-1) w.w. for rainbow trout. All concentrations found were far below maximum levels set by the European Union and in the same range as wild-caught fish also presented for comparison. Daily intake from the consumption of farmed fish species examined is calculated at 1.3 pg WHO-TEQ kg(-1) b.w., which is at the lowest end of TDI values proposed by the WHO. PMID:26745380

  19. Consumption of Lean Fish Reduces the Risk of Type 2 Diabetes Mellitus: A Prospective Population Based Cohort Study of Norwegian Women

    PubMed Central

    Rylander, Charlotta; Sandanger, Torkjel M.; Engeset, Dagrun; Lund, Eiliv

    2014-01-01

    Background The effects of fish consumption and n-3 fatty acids on type 2 diabetes mellitus (T2DM) have recently been debated. Objective We explored the risk of T2DM in relation to consumption of lean fish, fatty fish, fish products and total fish as well as cod liver oil supplements in a representative sample of Norwegian women. Design This was a prospective population based cohort study in 33740 women free of T2DM, stroke, angina or heart attack and with detailed information on important co-variates and dietary intake at baseline. Risk ratios and corresponding 95% CI were estimated using Poisson regression with log-person time as offset. Results Lean fish consumption was inversely associated with T2DM compared to zero intake. Risk ratios and 95% CI for intake of 75 and 100 g lean fish per day were 0.71 (0.51, 0.98) and 0.67 (0.46, 0.98), respectively. There was no effect of intake of fatty fish, fish products, total fish or use of cod liver oil supplements on the risk of T2DM. Conclusion Lean fish consumption of 75–100 g/d had a beneficial effect on T2DM. It remains unclear whether lean fish in itself has a protective effect on T2DM or that lean fish consumers have a protective life-style that we were not able to take into account in this study. Unfavorable effects of fatty fish consumption or use of cod liver oil supplements on T2DM were not observed. PMID:24587071

  20. How Nemo finds home: the neuroecology of dispersal and of population connectivity in larvae of marine fishes.

    PubMed

    Leis, Jeffrey M; Siebeck, Ulrike; Dixson, Danielle L

    2011-11-01

    Nearly all demersal teleost marine fishes have pelagic larval stages lasting from several days to several weeks, during which time they are subject to dispersal. Fish larvae have considerable swimming abilities, and swim in an oriented manner in the sea. Thus, they can influence their dispersal and thereby, the connectivity of their populations. However, the sensory cues marine fish larvae use for orientation in the pelagic environment remain unclear. We review current understanding of these cues and how sensory abilities of larvae develop and are used to achieve orientation with particular emphasis on coral-reef fishes. The use of sound is best understood; it travels well underwater with little attenuation, and is current-independent but location-dependent, so species that primarily utilize sound for orientation will have location-dependent orientation. Larvae of many species and families can hear over a range of ~100-1000 Hz, and can distinguish among sounds. They can localize sources of sounds, but the means by which they do so is unclear. Larvae can hear during much of their pelagic larval phase, and ontogenetically, hearing sensitivity, and frequency range improve dramatically. Species differ in sensitivity to sound and in the rate of improvement in hearing during ontogeny. Due to large differences among-species within families, no significant differences in hearing sensitivity among families have been identified. Thus, distances over which larvae can detect a given sound vary among species and greatly increase ontogenetically. Olfactory cues are current-dependent and location-dependent, so species that primarily utilize olfactory cues will have location-dependent orientation, but must be able to swim upstream to locate sources of odor. Larvae can detect odors (e.g., predators, conspecifics), during most of their pelagic phase, and at least on small scales, can localize sources of odors in shallow water, although whether they can do this in pelagic

  1. Multiple risk factors and ischaemic stroke in the elderly Asian population with and without atrial fibrillation. An analysis of 425,600 Chinese individuals without prior stroke.

    PubMed

    Guo, Yutao; Wang, Hao; Tian, Yingchun; Wang, Yutang; Lip, Gregory Y H

    2016-01-01

    Ischaemic stroke risk rises with the increasing cardiovascular risk factors. How atrial fibrillation (AF) incrementally contributes to the risk for ischaemic stroke with increasing age and multiple cardiovascular risk factors is unclear. In an individual patient with AF the mechanism of ischaemic stroke may be related directly to AF itself or to risk factors associated with AF. It was this study's objective to investigate incident ischaemic stroke in relation to age and increasing cardiovascular risk factor(s), and the incremental impact of AF on stroke rates. We studied a 5% random sampling from Chinese medical insurance data covering more than 10 million individuals, for the years 2001 to 2012. The rate of ischaemic stroke was calculated amongst the individuals with no prior history of ischaemic stroke, in relation to age groups (aged < 65, 65-74, ≥ 75 years old; n = 348,431, n = 56,952, n = 20,217, respectively), and increasing risk factors using the CHA2DS2-VASc score. Among the randomly sampled 425,600 individuals with total follow-up of 1,864,232 patient-years [63.8% male, mean age 60 years; 880 with AF, vs 424,720 non-AF], there were 13,242 (3.1%) ischaemic strokes after 64,834 person-years follow-up. Overall, ischaemic stroke incidence (per 100 person-years) was 0.35 (95%CI 0.34-0.35) in the non-AF population and 1.11 (0.84-1.45) with AF. The AF population age < 65 and 65-74 had higher CHA2DS2-VASc scores than the non-AF population (p< 0.001), but this was non-significant between the non-AF and AF population age ≥ 75 (p=0.086). For the population age ≥ 75 years, incident stroke rates were 2.07 (0.86-4.76) and 4.29 (4.08-4.51) in non-AF and AF populations, respectively. The non-AF population age ≥ 65 years with ≥ 2 additional comorbidities (hypertension, vascular disease, diabetic, or heart failure) had ischaemic stroke rates similar to an AF population with CHA2DS2-VASc ≥ 4. In both non-AF and AF populations, those with CHA2DS2

  2. REVIEW OF EVIDENCE: ARE ENDOCRINE DISRUPTING CHEMICALS IN THE AQUATIC ENVIRONMENT IMPACTING FISH POPULATIONS

    EPA Science Inventory

    In this paper, evidence from the current literature is presented that addresses either of two questions: 1) do EDCs in the aquatic environment have the potential to impact the reproductive health and survival of various fish species, and 2) are EDCs in the aquatic environment act...

  3. Application of Biochemical and Physiological Indicators for Assessing Recovery of Fish Populations in a Disturbed Stream

    NASA Astrophysics Data System (ADS)

    Adams, S. Marshall; Ham, Kenneth D.

    2011-06-01

    Recovery dynamics in a previously disturbed stream were investigated to determine the influence of a series of remedial actions on stream recovery and to evaluate the potential application of bioindicators as an environmental management tool. A suite of bioindicators, representing five different functional response groups, were measured annually for a sentinel fish species over a 15 year period during which a variety of remedial and pollution abatement actions were implemented. Trends in biochemical, physiological, condition, growth, bioenergetic, and nutritional responses demonstrated that the health status of a sentinel fish species in the disturbed stream approached that of fish in the reference stream by the end of the study. Two major remedial actions, dechlorination and water flow management, had large effects on stream recovery resulting in an improvement in the bioenergetic, disease, nutritional, and organ condition status of the sentinel fish species. A subset of bioindicators responded rather dramatically to temporal trends affecting all sites, but some indicators showed little response to disturbance or to restoration activities. In assessing recovery of aquatic systems, application of appropriate integrative structural indices along with a variety of sensitive functional bioindicators should be used to understand the mechanistic basis of stress and recovery and to reduce the risk of false positives. Understanding the mechanistic processes involved between stressors, stress responses of biota, and the recovery dynamics of aquatic systems reduces the uncertainty involved in environmental management and regulatory decisions resulting in an increased ability to predict the consequences of restoration and remedial actions for aquatic systems.

  4. Application of Biochemical and Physiological Indicators for Assessing Recovery of Fish Populations in a Disturbed Stream

    SciTech Connect

    Adams, S. M.; Ham, Kenneth D.

    2011-06-01

    Recovery dynamics in a previously disturbed streamwere investigated to determine the influence of a series of remedial actions on stream recovery and to evaluate the potential application of bioindicators as an environmental management tool. A suite of bioindicators, representing five different functional response groups, were measured annually for a sentinel fish species over a 15 year period during which a variety of remedial and pollution abatement actions were implemented. Trends in biochemical, physiological, condition, growth, bioenergetic, and nutritional responses demonstrated that the health status of a sentinel fish species in the disturbed stream approached that of fish in the reference stream by the end of the study. Two major remedial actions, dechlorination and water flow management, had large effects on stream recovery resulting in an improvement in the bioenergetic, disease, nutritional, and organ condition status of the sentinel fish species. A subset of bioindicators responded rather dramatically to temporal trends affecting all sites, but some indicators showed little response to disturbance or to restoration activities. In assessing recovery of aquatic systems, application of appropriate integrative structural indices along with a variety of sensitive functional bioindicators should be used to understand the mechanistic basis of stress and recovery and to reduce the risk of false positives. Understanding the mechanistic processes involved between stressors, stress responses of biota, and the recovery dynamics of aquatic systems reduces the uncertainty involved in environmental management and regulatory decisions resulting in an increased ability to predict the consequences of restoration and remedial actions for aquatic systems.

  5. Application of Biochemical and Physiological Indicators for Assessing Recovery of Fish Populations in a Disturbed Stream

    SciTech Connect

    Adams, Marshall; Ham, Kenneth

    2011-01-01

    Recovery dynamics in a previously disturbed streamwere investigated to determine the influence of a series of remedial actions on stream recovery and to evaluate the potential application of bioindicators as an environmental management tool. A suite of bioindicators, representing five different functional response groups, were measured annually for a sentinel fish species over a 15 year period during which a variety of remedial and pollution abatement actions were implemented. Trends in biochemical, physiological, condition, growth, bioenergetic, and nutritional responses demonstrated that the health status of a sentinel fish species in the disturbed stream approached that of fish in the reference stream by the end of the study. Two major remedial actions, dechlorination and water flow management, had large effects on stream recovery resulting in an improvement in the bioenergetic, disease, nutritional, and organ condition status of the sentinel fish species. A subset of bioindicators responded rather dramatically to temporal trends affecting all sites, but some indicators showed little response to disturbance or to restoration activities. In assessing recovery of aquatic systems, application of appropriate integrative structural indices along with a variety of sensitive functional bioindicators should be used to understand the mechanistic basis of stress and recovery and to reduce the risk of false positives. Understanding the mechanistic processes involved between stressors, stress responses of biota, and the recovery dynamics of aquatic systems reduces the uncertainty involved in environmental management and regulatory decisions resulting in an increased ability to predict the consequences of restoration and remedial actions for aquatic systems.

  6. Restoring piscivorous fish populations in the Laurentian Great Lakes causes seabird dietary change

    USGS Publications Warehouse

    Hebert, C.E.; Weseloh, D.V.C.; Idrissi, A.; Arts, M.T.; O'Gorman, R.; Gorman, O.T.; Locke, B.; Madenjian, C.P.; Roseman, E.F.

    2008-01-01

    Ecosystem change often affects the structure of aquatic communities thereby regulating how much and by what pathways energy and critical nutrients flow through food webs. The availability of energy and essential nutrients to top predators such as seabirds that rely on resources near the water's surface will be affected by changes in pelagic prey abundance. Here, we present results from analysis of a 25-year data set documenting dietary change in a predatory seabird from the Laurentian Great Lakes. We reveal significant declines in trophic position and alterations in energy and nutrient flow over time. Temporal changes in seabird diet tracked decreases in pelagic prey fish abundance. As pelagic prey abundance declined, birds consumed less aquatic prey and more terrestrial food. This pattern was consistent across all five large lake ecosystems. Declines in prey fish abundance may have primarily been the result of predation by stocked piscivorous fishes, but other lake-specific factors were likely also important. Natural resource management activities can have unintended consequences for nontarget ecosystem components. Reductions in pelagic prey abundance have reduced the capacity of the Great Lakes to support the energetic requirements of surface-feeding seabirds. In an environment characterized by increasingly limited pelagic fish resources, they are being offered a Hobsonian choice: switch to less nutritious terrestrial prey or go hungry. ?? 2008 by the Ecological Society of America.

  7. HISTOPATHOLOGIC BIOMARKERS IN FERAL FRESHWATER FISH POPULATIONS EXPOSED TO DIFFERENT TYPES OF CONTAMINANT STRESS. (R825433)

    EPA Science Inventory

    Histopathologic alterations of gill, liver, and spleen were studied in feral fish from three freshwater ecosystems that experience different types of contaminant stress. East Fork Poplar Creek (EFPC), a third-order stream in East Tennessee, receives point source discharges of ...

  8. RETINOID METABOLISM IN FISH EMBRYOS FROM SENSITIVE AND RESISTANT POPULATIONS EXPOSED TO DIOXIN-LIKE COMPOUNDS

    EPA Science Inventory

    Early developmental stages of fish are extremely sensitive to a class of toxic and persistent environmental contaminants known as dioxin-like compounds (DLCs). Most of the toxicological actions of DLCs are mediated via the Aryl hydrocarbon Receptor (AhR) that regulates transcript...

  9. Effects of hydrologic infrastructure on flow regimes of California's Central Valley rivers: Implications for fish populations

    USGS Publications Warehouse

    Brown, Larry R.; Bauer, Marissa L.

    2010-01-01

    Alteration of natural flow regimes is generally acknowledged to have negative effects on native biota; however, methods for defining ecologically appropriate flow regimes in managed river systems are only beginning to be developed. Understanding how past and present water management has affected rivers is an important part of developing such tools. In this paper, we evaluate how existing hydrologic infrastructure and management affect streamflow characteristics of rivers in the Central Valley, California and discuss those characteristics in the context of habitat requirements of native and alien fishes. We evaluated the effects of water management by comparing observed discharges with estimated discharges assuming no water management ("full natural runoff"). Rivers in the Sacramento River drainage were characterized by reduced winter–spring discharges and augmented discharges in other months. Rivers in the San Joaquin River drainage were characterized by reduced discharges in all months but particularly in winter and spring. Two largely unaltered streams had hydrographs similar to those based on full natural runoff of the regulated rivers. The reduced discharges in the San Joaquin River drainage streams are favourable for spawning of many alien species, which is consistent with observed patterns of fish distribution and abundance in the Central Valley. However, other factors, such as water temperature, are also important to the relative success of native and alien resident fishes. As water management changes in response to climate change and societal demands, interdisciplinary programs of research and monitoring will be essential for anticipating effects on fishes and to avoid unanticipated ecological outcomes.

  10. Increased Extinction Potential of Insular Fish Populations with Reduced Life History Variation and Low Genetic Diversity

    PubMed Central

    Hellmair, Michael; Kinziger, Andrew P.

    2014-01-01

    Theoretical work has shown that reduced phenotypic heterogeneity leads to population instability and can increase extinction potential, yet few examples exist of natural populations that illustrate how varying levels expressed diversity may influence population persistence, particularly during periods of stochastic environmental fluctuation. In this study, we assess levels of expressed variation and genetic diversity among demographically independent populations of tidewater goby (Eucyclogobius newberryi), show that reductions in both factors typically coincide, and describe how low levels of diversity contribute to the extinction risk of these isolated populations. We illustrate that, for this annual species, continuous reproduction is a safeguard against reproductive failure by any one population segment, as natural, stochastically driven salinity increases frequently result in high mortality among juvenile individuals. Several study populations deviated from the natural pattern of year-round reproduction typical for the species, rendering those with severely truncated reproductive periods vulnerable to extinction in the event of environmental fluctuation. In contrast, demographically diverse populations are more likely to persist through such periods through the continuous presence of adults with broader physiological tolerance to abrupt salinity changes. Notably, we found a significant correlation between genetic diversity and demographic variation in the study populations, which could be the result of population stressors that restrict both of these diversity measures simultaneously, or suggestive of a causative relationship between these population characteristics. These findings demonstrate the importance of biocomplexity at the population level, and assert that the maintenance of diversity contributes to population resilience and conservation of this endangered species. PMID:25409501

  11. Increased extinction potential of insular fish populations with reduced life history variation and low genetic diversity.

    PubMed

    Hellmair, Michael; Kinziger, Andrew P

    2014-01-01

    Theoretical work has shown that reduced phenotypic heterogeneity leads to population instability and can increase extinction potential, yet few examples exist of natural populations that illustrate how varying levels expressed diversity may influence population persistence, particularly during periods of stochastic environmental fluctuation. In this study, we assess levels of expressed variation and genetic diversity among demographically independent populations of tidewater goby (Eucyclogobius newberryi), show that reductions in both factors typically coincide, and describe how low levels of diversity contribute to the extinction risk of these isolated populations. We illustrate that, for this annual species, continuous reproduction is a safeguard against reproductive failure by any one population segment, as natural, stochastically driven salinity increases frequently result in high mortality among juvenile individuals. Several study populations deviated from the natural pattern of year-round reproduction typical for the species, rendering those with severely truncated reproductive periods vulnerable to extinction in the event of environmental fluctuation. In contrast, demographically diverse populations are more likely to persist through such periods through the continuous presence of adults with broader physiological tolerance to abrupt salinity changes. Notably, we found a significant correlation between genetic diversity and demographic variation in the study populations, which could be the result of population stressors that restrict both of these diversity measures simultaneously, or suggestive of a causative relationship between these population characteristics. These findings demonstrate the importance of biocomplexity at the population level, and assert that the maintenance of diversity contributes to population resilience and conservation of this endangered species. PMID:25409501

  12. A fully-stochasticized, age-structured population model for population viability analysis of fish: Lower Missouri River endangered pallid sturgeon example

    USGS Publications Warehouse

    Wildhaber, Mark L.; Albers, Janice; Green, Nicholas; Moran, Edward H.

    2015-01-01

    We develop a fully-stochasticized, age-structured population model suitable for population viability analysis (PVA) of fish and demonstrate its use with the endangered pallid sturgeon (Scaphirhynchus albus) of the Lower Missouri River as an example. The model incorporates three levels of variance: parameter variance (uncertainty about the value of a parameter itself) applied at the iteration level, temporal variance (uncertainty caused by random environmental fluctuations over time) applied at the time-step level, and implicit individual variance (uncertainty caused by differences between individuals) applied within the time-step level. We found that population dynamics were most sensitive to survival rates, particularly age-2+ survival, and to fecundity-at-length. The inclusion of variance (unpartitioned or partitioned), stocking, or both generally decreased the influence of individual parameters on population growth rate. The partitioning of variance into parameter and temporal components had a strong influence on the importance of individual parameters, uncertainty of model predictions, and quasiextinction risk (i.e., pallid sturgeon population size falling below 50 age-1+ individuals). Our findings show that appropriately applying variance in PVA is important when evaluating the relative importance of parameters, and reinforce the need for better and more precise estimates of crucial life-history parameters for pallid sturgeon.

  13. DEVELOPMENT OF A DNA ARCHIVE FOR GENETIC MONITORING OF FISH POPULATIONS

    EPA Science Inventory

    Analysis of intraspecific genetic diversity provides a potentially powerful tool to estimate the impacts of environmental stressors on populations. Genetic responses of populations to novel stressors include dramatic shifts in genotype frequencies at loci under selection (i.e. ad...

  14. FINE-SCALE GENETIC DIFFERENTIATION BETWEEN CONTAMINANT-TOLERANT AND CONTAMINANT SENSITIVE FISH POPULATIONS

    EPA Science Inventory

    Studies have suggested that environmental contaminants can act as selective forces on exposed populations of wildlife species. Chronically exposed populations have shown reduced genetic diversity and/or demonstrated other genetic changes. We evaluated the genetic structure of pop...

  15. INDIVIDUAL EFFECTS OF THREE STEROIDAL ESTROGENS ON A FISH EXTRAPOLATED TO THE POPULATION LEVEL

    EPA Science Inventory

    Endocrine disrupting chemicals (EDCs) in the environment may disturb the population dynamics of wildlife by affecting reproductive output and early life survival of organisms. This study used a population model and data obtained from laboratory experimentation and the literature ...

  16. Population size is weakly related to quantitative genetic variation and trait differentiation in a stream fish.

    PubMed

    Wood, Jacquelyn L A; Tezel, Defne; Joyal, Destin; Fraser, Dylan J

    2015-09-01

    How population size influences quantitative genetic variation and differentiation among natural, fragmented populations remains unresolved. Small, isolated populations might occupy poor quality habitats and lose genetic variation more rapidly due to genetic drift than large populations. Genetic drift might furthermore overcome selection as population size decreases. Collectively, this might result in directional changes in additive genetic variation (VA ) and trait differentiation (QST ) from small to large population size. Alternatively, small populations might exhibit larger variation in VA and QST if habitat fragmentation increases variability in habitat types. We explored these alternatives by investigating VA and QST using nine fragmented populations of brook trout varying 50-fold in census size N (179-8416) and 10-fold in effective number of breeders, Nb (18-135). Across 15 traits, no evidence was found for consistent differences in VA and QST with population size and almost no evidence for increased variability of VA or QST estimates at small population size. This suggests that (i) small populations of some species may retain adaptive potential according to commonly adopted quantitative genetic measures and (ii) populations of varying sizes experience a variety of environmental conditions in nature, however extremely large studies are likely required before any firm conclusions can be made. PMID:26207947

  17. Wavelet-based resolution recovery using an anatomical prior provides quantitative recovery for human population phantom PET [11C]raclopride data

    NASA Astrophysics Data System (ADS)

    Shidahara, M.; Tsoumpas, C.; McGinnity, C. J.; Kato, T.; Tamura, H.; Hammers, A.; Watabe, H.; Turkheimer, F. E.

    2012-05-01

    The objective of this study was to evaluate a resolution recovery (RR) method using a variety of simulated human brain [11C]raclopride positron emission tomography (PET) images. Simulated datasets of 15 numerical human phantoms were processed by a wavelet-based RR method using an anatomical prior. The anatomical prior was in the form of a hybrid segmented atlas, which combined an atlas for anatomical labelling and a PET image for functional labelling of each anatomical structure. We applied RR to both 60 min static and dynamic PET images. Recovery was quantified in 84 regions, comparing the typical ‘true’ value for the simulation, as obtained in normal subjects, simulated and RR PET images. The radioactivity concentration in the white matter, striatum and other cortical regions was successfully recovered for the 60 min static image of all 15 human phantoms; the dependence of the solution on accurate anatomical information was demonstrated by the difficulty of the technique to retrieve the subthalamic nuclei due to mismatch between the two atlases used for data simulation and recovery. Structural and functional synergy for resolution recovery (SFS-RR) improved quantification in the caudate and putamen, the main regions of interest, from -30.1% and -26.2% to -17.6% and -15.1%, respectively, for the 60 min static image and from -51.4% and -38.3% to -27.6% and -20.3% for the binding potential (BPND) image, respectively. The proposed methodology proved effective in the RR of small structures from brain [11C]raclopride PET images. The improvement is consistent across the anatomical variability of a simulated population as long as accurate anatomical segmentations are provided.

  18. Elucidating dynamic responses of North Pacific fish populations to climatic forcing: Influence of life-history strategy

    NASA Astrophysics Data System (ADS)

    Yatsu, A.; Aydin, K. Y.; King, J. R.; McFarlane, G. A.; Chiba, S.; Tadokoro, K.; Kaeriyama, M.; Watanabe, Y.

    2008-05-01

    In order to explore mechanistic linkages between low-frequency ocean/climate variability, and fish population responses, we undertook comparative studies of time-series of recruitment-related productivity and the biomass levels of fish stocks representing five life-history strategies in the northern North Pacific between the 1950s and the present. We selected seven species: Japanese sardine ( Sardinopus melanostictus) and California sardine ( Sardinopus sagax) (opportunistic strategists), walleye pollock ( Theragra chalcogramma, intermediate strategist), pink salmon ( Oncorhynchus gorbuscha, salmonic strategist), sablefish ( Anoplopoma fimbria) and Pacific halibut ( Hippoglossus stenolepis) (periodic strategists) and spiny dogfish ( Squalus acanthias, equilibrium strategist). The responses in terms of productivity of sardine, pink salmon, sablefish and halibut to climatic regime shifts were generally immediate, delayed, or no substantial responses depending on the particular regime shift year and fish stock (population). In walleye pollock, there were some periods of high productivity and low productivity, but not coincidental to climatic regime shifts, likely due to indirect climate forcing impacts on both bottom-up and top-down processes. Biomass of zooplankton and all fish stocks examined, except for spiny dogfish whose data were limited, indicated a decadal pattern with the most gradual changes in periodic strategists and most intensive and rapid changes in opportunistic strategists. Responses of sardine productivity to regime shifts were the most intense, probably due to the absence of density-dependent effects and the availability of refuges from predators when sardine biomass was extremely low. Spiny dogfish were least affected by environmental variability. Conversely, spiny dogfish are likely to withstand only modest harvest rates due to their very low intrinsic rate of increase. Thus, each life-history strategy type had a unique response to climatic

  19. Evaluation and management implications of uncertainty in a multispecies size-structured model of population and community responses to fishing

    PubMed Central

    Thorpe, Robert B; Le Quesne, Will J F; Luxford, Fay; Collie, Jeremy S; Jennings, Simon

    2015-01-01

    Implementation of an ecosystem approach to fisheries requires advice on trade-offs among fished species and between fisheries yields and biodiversity or food web properties. However, the lack of explicit representation, analysis and consideration of uncertainty in most multispecies models has limited their application in analyses that could support management advice. We assessed the consequences of parameter uncertainty by developing 78 125 multispecies size-structured fish community models, with all combinations of parameters drawn from ranges that spanned parameter values estimated from data and literature. This unfiltered ensemble was reduced to 188 plausible models, the filtered ensemble (FE), by screening outputs against fish abundance data and ecological principles such as requiring species' persistence. Effects of parameter uncertainty on estimates of single-species management reference points for fishing mortality (FMSY, fishing mortality rate providing MSY, the maximum sustainable yield) and biomass (BMSY, biomass at MSY) were evaluated by calculating probability distributions of estimated reference points with the FE. There was a 50% probability that multispecies FMSY could be estimated to within ±25% of its actual value, and a 50% probability that BMSY could be estimated to within ±40% of its actual value. Signal-to-noise ratio was assessed for four community indicators when mortality rates were reduced from current rates to FMSY. The slope of the community size spectrum showed the greatest signal-to-noise ratio, indicating that it would be the most responsive indicator to the change in fishing mortality F. Further, the power of an ongoing international monitoring survey to detect predicted responses of size spectrum slope was higher than for other size-based metrics. Synthesis and applications: Application of the ensemble model approach allows explicit representation of parameter uncertainty and supports advice and management by (i) providing

  20. Cancer in wild freshwater fish populations with emphasis on the Great Lakes

    SciTech Connect

    Baumann, P.C.

    1984-01-01

    Papillomas in white sucker, gonadal tumors in carp x goldfish hybrids, and thyroid hyperplasia in coho salmon seem to be widespread in occurrence throughout the Great Lakes. In all cases, however, tumor incidence increases near areas contaminated by industrial effluents such as polychlorinated biphenyls, and polynuclear aromatic hydrocarbons (PAHs). Liver tumors in bullhead occur frequently at a site with large amounts of PAH in the sediment, and liver tumors in sauger and walleye occur in a lake which has been a dump site for copper mine wastes. Therefore, tumor incidence in certain species of fish may be a sensitive indicator of the level of carcinogenic compounds in the environment. The Great Lakes apparently contain a number of localized areas in which carcinogenic contaminants are now affecting the health of resident fish species. 15 references.

  1. Ice age fish in a warming world: minimal variation in thermal acclimation capacity among lake trout (Salvelinus namaycush) populations

    PubMed Central

    Kelly, Nicholas I.; Burness, Gary; McDermid, Jenni L.; Wilson, Chris C.

    2014-01-01

    In the face of climate change, the persistence of cold-adapted species will depend on their adaptive capacity for physiological traits within and among populations. The lake trout (Salvelinus namaycush) is a cold-adapted salmonid and a relict from the last ice age that is well suited as a model species for studying the predicted effects of climate change on coldwater fishes. We investigated the thermal acclimation capacity of upper temperature resistance and metabolism of lake trout from four populations across four acclimation temperatures. Individuals were reared from egg fertilization onward in a common environment and, at 2 years of age, were acclimated to 8, 11, 15 or 19°C. Although one population had a slightly higher maximal metabolic rate (MMR), higher metabolic scope for activity and faster metabolic recovery across all temperatures, there was no interpopulation variation for critical thermal maximum (CTM) or routine metabolic rate (RMR) or for the thermal acclimation capacity of CTM, RMR, MMR or metabolic scope. Across the four acclimation temperatures, there was a 3°C maximal increase in CTM and 3-fold increase in RMR for all populations. Above 15°C, a decline in MMR and increase in RMR resulted in sharply reduced metabolic scope for all populations acclimated at 19°C. Together, these data suggest there is limited variation among lake trout populations in thermal physiology or capacity for thermal acclimatization, and that climate change may impact lake trout populations in a similar manner across a wide geographical range. Understanding the effect of elevated temperatures on the thermal physiology of this economically and ecologically important cold-adapted species will help inform management and conservation strategies for the long-term sustainability of lake trout populations. PMID:27293646

  2. Influence of natural acidity and fisheries management activities upon the status of Adirondack fish populations

    SciTech Connect

    Retzsch, W.C.; Everett, A.G.

    1981-01-01

    Acidification and the disappearance of fish from some Adirondack waters does not appear to be caused solely by acid rain. Acidification is a natural process under certain conditions and precipitation acidified by industrial emissions appears to be only one of many possible causes of pond, lake and stream acidification. Factors other than acid precipitation can cause acidification or reduce fish stocks. As a result of glaciation, northern New York State has hundreds of glacial ponds and lakes, most of which are dystrophic or oligotrophic. Many such waters are located in the western and central portions of the Adirondacks, an area frequently cited as exhibiting the most pronounced effects of acid rain. It is widely recognized that natural unpolluted bogs and peat deposits result in low pH environments. Seasonal and weather conditions also appear to have a substantial effect upon the acidity of peat-bog outflows. An evaluation of recent survey data on critically acidified Adirondack waters indicates that of 192 waters with values less than pH 5.0, approximately 61 percent appear to be directly influenced by natural bog conditions and an additional 14 percent are probably influenced. A review of historical and recent survey data suggest that significant factors, such as natural causes of acidification, low oxygen concentrations, high CO/sub 2/ and H/sub 2/S concentrations, and extreme temperatures may have been ignored or underestimated in evaluating the cause of acidification and fish disappearances in some Adirondack waters. Another factor responsible for the current status of fish stocks in the Adirondacks involves past and present fishery resource management activities.

  3. Multiple regression models of δ13C and δ15N for fish populations in the eastern Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Radabaugh, Kara R.; Peebles, Ernst B.

    2014-08-01

    Multiple regression models were created to explain spatial and temporal variation in the δ13C and δ15N values of fish populations on the West Florida Shelf (eastern Gulf of Mexico, USA). Extensive trawl surveys from three time periods were used to acquire muscle samples from seven groundfish species. Isotopic variation (δ13Cvar and δ15Nvar) was calculated as the deviation from the isotopic mean of each fish species. Static spatial data and dynamic water quality parameters were used to create models predicting δ13Cvar and δ15Nvar in three fish species that were caught in the summers of 2009 and 2010. Additional data sets were then used to determine the accuracy of the models for predicting isotopic variation (1) in a different time period (fall 2010) and (2) among four entirely different fish species that were collected during summer 2009. The δ15Nvar model was relatively stable and could be applied to different time periods and species with similar accuracy (mean absolute errors 0.31-0.33‰). The δ13Cvar model had a lower predictive capability and mean absolute errors ranged from 0.42 to 0.48‰. δ15N trends are likely linked to gradients in nitrogen fixation and Mississippi River influence on the West Florida Shelf, while δ13C trends may be linked to changes in algal species, photosynthetic fractionation, and abundance of benthic vs. planktonic basal resources. These models of isotopic variability may be useful for future stable isotope investigations of trophic level, basal resource use, and animal migration on the West Florida Shelf.

  4. Context dependency of trait repeatability and its relevance for management and conservation of fish populations.

    PubMed

    Killen, S S; Adriaenssens, B; Marras, S; Claireaux, G; Cooke, S J

    2016-01-01

    Repeatability of behavioural and physiological traits is increasingly a focus for animal researchers, for which fish have become important models. Almost all of this work has been done in the context of evolutionary ecology, with few explicit attempts to apply repeatability and context dependency of trait variation toward understanding conservation-related issues. Here, we review work examining the degree to which repeatability of traits (such as boldness, swimming performance, metabolic rate and stress responsiveness) is context dependent. We review methods for quantifying repeatability (distinguishing between within-context and across-context repeatability) and confounding factors that may be especially problematic when attempting to measure repeatability in wild fish. Environmental factors such temperature, food availability, oxygen availability, hypercapnia, flow regime and pollutants all appear to alter trait repeatability in fishes. This suggests that anthropogenic environmental change could alter evolutionary trajectories by changing which individuals achieve the greatest fitness in a given set of conditions. Gaining a greater understanding of these effects will be crucial for our ability to forecast the effects of gradual environmental change, such as climate change and ocean acidification, the study of which is currently limited by our ability to examine trait changes over relatively short time scales. Also discussed are situations in which recent advances in technologies associated with electronic tags (biotelemetry and biologging) and respirometry will help to facilitate increased quantification of repeatability for physiological and integrative traits, which so far lag behind measures of repeatability of behavioural traits. PMID:27382470

  5. Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish

    PubMed Central

    Jackson, Alexis M.; Semmens, Brice X.; Sadovy de Mitcheson, Yvonne; Nemeth, Richard S.; Heppell, Scott A.; Bush, Phillippe G.; Aguilar-Perera, Alfonso; Claydon, John A. B.; Calosso, Marta C.; Sealey, Kathleen S.; Schärer, Michelle T.; Bernardi, Giacomo

    2014-01-01

    To address patterns of genetic connectivity in a mass-aggregating marine fish, we analyzed genetic variation in mitochondrial DNA (mtDNA), microsatellites, and single nucleotide polymorphisms (SNPs) for Nassau grouper (Epinephelus striatus). We expected Nassau grouper to exhibit genetic differentiation among its subpopulations due to its reproductive behavior and retentive oceanographic conditions experienced across the Caribbean basin. All samples were genotyped for two mitochondrial markers and 9 microsatellite loci, and a subset of samples were genotyped for 4,234 SNPs. We found evidence of genetic differentiation in a Caribbean-wide study of this mass-aggregating marine fish using mtDNA (FST = 0.206, p<0.001), microsatellites (FST = 0.002, p = 0.004) and SNPs (FST = 0.002, p = 0.014), and identified three potential barriers to larval dispersal. Genetically isolated regions identified in our work mirror those seen for other invertebrate and fish species in the Caribbean basin. Oceanographic regimes in the Caribbean may largely explain patterns of genetic differentiation among Nassau grouper subpopulations. Regional patterns observed warrant standardization of fisheries management and conservation initiatives among countries within genetically isolated regions. PMID:24830641

  6. Context dependency of trait repeatability and its relevance for management and conservation of fish populations

    PubMed Central

    Killen, S. S.; Adriaenssens, B.; Marras, S.; Claireaux, G.; Cooke, S. J.

    2016-01-01

    Repeatability of behavioural and physiological traits is increasingly a focus for animal researchers, for which fish have become important models. Almost all of this work has been done in the context of evolutionary ecology, with few explicit attempts to apply repeatability and context dependency of trait variation toward understanding conservation-related issues. Here, we review work examining the degree to which repeatability of traits (such as boldness, swimming performance, metabolic rate and stress responsiveness) is context dependent. We review methods for quantifying repeatability (distinguishing between within-context and across-context repeatability) and confounding factors that may be especially problematic when attempting to measure repeatability in wild fish. Environmental factors such temperature, food availability, oxygen availability, hypercapnia, flow regime and pollutants all appear to alter trait repeatability in fishes. This suggests that anthropogenic environmental change could alter evolutionary trajectories by changing which individuals achieve the greatest fitness in a given set of conditions. Gaining a greater understanding of these effects will be crucial for our ability to forecast the effects of gradual environmental change, such as climate change and ocean acidification, the study of which is currently limited by our ability to examine trait changes over relatively short time scales. Also discussed are situations in which recent advances in technologies associated with electronic tags (biotelemetry and biologging) and respirometry will help to facilitate increased quantification of repeatability for physiological and integrative traits, which so far lag behind measures of repeatability of behavioural traits. PMID:27382470

  7. POPULATION GENETICS AND TOLERANCE TO DIOXIN-LIKE COMPOUNDS OF A MIGRATORY MARINE FISH (MENIDIA MENIDIA) IN POLYCHLORINATED BIPHENOL-CONTAMINTED AND REFERENCES SITES

    EPA Science Inventory

    We evaluated a population of migratory fish (Menidia menidia) that spawn in New Bedford Harbor (NBH), MA, USA, a U.S. EPA Superfund site with extreme polychlorinated biphenyl (PCB) for evidence of pollution tolerance and population genetic changes. We selected this site because ...

  8. Population substructuring in a migratory freshwater fish Prochilodus argenteus (Characiformes, Prochilodontidae) from the São Francisco River.

    PubMed

    Hatanaka, Terumi; Henrique-Silva, Flávio; Galetti, Pedro Manoel

    2006-01-01

    The construction of hydroelectric dams, pollution of rivers and other environmental changes are responsible for the disappearance of many natural fish stocks. The purpose of this work was to analyze the fish Prochilodus argenteus inhabiting the region of the Três Marias dam in the São Francisco River (Brazil) collected in two sites having distinct environmental characteristics. Three novel homologous and one known cross-specific microsatellites were used to assess genetic variation within and between the two collection sites (namely A and B) in order to confirm the occurrence of population substructuring previously suggested using RAPD markers. A higher number of exclusive alleles and a greater genetic variability in region B strongly reinforce the co-existence of different reproductive units in this area. F(ST) estimates showed a significant population differentiation between the two sites, indicating the possible existence of distinct gene pools. Considering the economic importance of this fishery resource in the São Francisco River, these findings could provide very important information for fisheries management, aquaculture and conservation of the stocks of this species. PMID:16502092

  9. Observations of migrant exchange and mixing in a coral reef fish metapopulation link scales of marine population connectivity.

    PubMed

    Horne, John B; van Herwerden, Lynne; Abellana, Sheena; McIlwain, Jennifer L

    2013-01-01

    Much progress has been made toward understanding marine metapopulation dynamics, largely because of multilocus microsatellite surveys able to connect related individuals within the metapopulation. However, most studies are focused on small spatial scales, tens of kilometers, while demographic exchange at larger spatial scales remains poorly documented. Additionally, many small-scale demographic studies conflict with broad-scale phylogeographic patterns concerning levels of marine population connectivity, highlighting a need for data on more intermediate scales. Here, we investigated demographic recruitment processes of a commercially important coral reef fish, the bluespine unicornfish (Naso unicornis) using a suite of mitochondrial DNA (mtDNA) and microsatellite markers. Sampling for this study ranged across the southern Marianas Islands, a linear distance of 250 km and included 386 newly settled postlarval recruits. In contrast with other studies, we report that cohorts of recruits were genetically homogeneous in space and time, with no evidence of temporally stochastic sweepstakes reproduction. The genetic diversity of recruits was high and commensurate with that of the adult population. In addition, there is substantial evidence that 2 recruits, separated by 250 km, were full siblings. This is the largest direct observation of dispersal to date for a coral reef fish. All indications suggest that subpopulations of N. unicornis experience high levels of demographic migrant exchange and metapopulation mixing on a spatial scale of hundreds of kilometers, consistent with high levels of broad-scale genetic connectivity previously reported in this species. PMID:23580757

  10. Health service utilisation for anogenital warts in Ontario, Canada prior to the human papillomavirus (HPV) vaccine programme introduction: a retrospective longitudinal population-based study

    PubMed Central

    Guerra, Fiona M; Rosella, Laura C; Dunn, Sheila; Wilson, Sarah E; Chen, Cynthia; Deeks, Shelley L

    2016-01-01

    Objective Trends in occurrence of anogenital warts (AGWs) can provide early evidence of human papillomavirus (HPV) vaccination programme impact on preventing HPV infection and HPV-induced lesions. The objective of this study was to provide a baseline of AGW epidemiology in Ontario prior to the introduction of the publicly-funded school-based HPV vaccination programme in September 2007. Setting and participants As a retrospective longitudinal population-based study, we used health administrative data as a proxy to estimate incident AGWs and total health service utilisation (HSU) for AGWs for all Ontario residents 15 years and older with valid health cards between 1 April 2003 and 31 March 2007. Outcome measures The outcome of interest was AGW healthcare utilisation identified using the International Classification of Diseases, 10th revision (ICD-10) diagnostic code for AGWs, as well as an algorithm for identifying AGW physician office visits in a database with a unique system of diagnostic and procedural codes. An AGW case was considered incident if preceded by 12 months without HSU for AGWs. Time trends by age group and sex were analysed. Results Between fiscal years 2003 and 2006, we identified 123 247 health service visits for AGWs by 51 436 Ontario residents 15 years and older. Incident AGWs peaked in females and males in the 21–23 year age group, at 3.74 per 1000 and 2.81 per 1000, respectively. HSU for AGWs peaked in females and males within the 21–23 year age group, at 9.34 per 1000 and 7.22 per 1000, respectively. Conclusions To the best of our knowledge, this is the first population-based study of AGW incidence and HSU in Ontario. The sex and age distribution of individuals with incident and prevalent AGWs in Ontario was similar to that of other provinces before HPV vaccine programme implementation in Canada. PMID:26966057

  11. Connectivity between migrating and landlocked populations of a diadromous fish species investigated using otolith microchemistry.

    PubMed

    Tulp, Ingrid; Keller, Marieke; Navez, Jacques; Winter, Hendrik V; de Graaf, Martin; Baeyens, Willy

    2013-01-01

    Smelt Osmerus eperlanus has two different life history strategies in The Netherlands. The migrating population inhabits the Wadden Sea and spawns in freshwater areas. After the closure of the Afsluitdijk in 1932, part of the smelt population became landlocked. The fresh water smelt population has been in severe decline since 1990, and has strongly negatively impacted the numbers of piscivorous water birds relying on smelt as their main prey. The lakes that were formed after the dike closure, IJsselmeer and Markermeer have been assigned as Natura 2000 sites, based on their importance for (among others) piscivorous water birds. Because of the declining fresh water smelt population, the question arose whether this population is still supported by the diadromous population. Opportunities for exchange between fresh water and the sea are however limited to discharge sluices. The relationship between the diadromous and landlocked smelt population was analysed by means of otolith microchemistry. Our interpretation of otolith strontium ((88)Sr) patterns from smelt specimens collected in the fresh water area of Lake IJsselmeer and Markermeer, compared to those collected in the nearby marine environment, is that there is currently no evidence for a substantial contribution from the diadromous population to the spawning stock of the landlocked population. PMID:23922803

  12. Connectivity between Migrating and Landlocked Populations of a Diadromous Fish Species Investigated Using Otolith Microchemistry

    PubMed Central

    Tulp, Ingrid; Keller, Marieke; Navez, Jacques; Winter, Hendrik V.; de Graaf, Martin; Baeyens, Willy

    2013-01-01

    Smelt Osmerus eperlanus has two different life history strategies in the Netherlands. The migrating population inhabits the Wadden Sea and spawns in freshwater areas. After the closure of the Afsluitdijk in 1932, part of the smelt population became landlocked. The fresh water smelt population has been in severe decline since 1990, and has strongly negatively impacted the numbers of piscivorous water birds relying on smelt as their main prey. The lakes that were formed after the dike closure, IJsselmeer and Markermeer have been assigned as Natura 2000 sites, based on their importance for (among others) piscivorous water birds. Because of the declining fresh water smelt population, the question arose whether this population is still supported by the diadromous population. Opportunities for exchange between fresh water and the sea are however limited to discharge sluices. The relationship between the diadromous and landlocked smelt population was analysed by means of otolith microchemistry. Our interpretation of otolith strontium (88Sr) patterns from smelt specimens collected in the fresh water area of Lake IJsselmeer and Markermeer, compared to those collected in the nearby marine environment, is that there is currently no evidence for a substantial contribution from the diadromous population to the spawning stock of the landlocked population. PMID:23922803

  13. Using a combined population-based and kinetic modelling approach to assess timescales and durations of magma migration activities prior to the 1669 flank eruption of Mt. Etna

    NASA Astrophysics Data System (ADS)

    Kahl, M.; Morgan, D. J.; Viccaro, M.; Dingwell, D. B.

    2015-12-01

    The March-July eruption of Mt. Etna in 1669 is ranked as one of the most destructive and voluminous eruptions of Etna volcano in historical times. To assess threats from future eruptions, a better understanding of how and over what timescales magma moved underground prior to and during the 1669 eruption is required. We present a combined population based and kinetic modelling approach [1-2] applied to 185 olivine crystals that erupted during the 1669 eruption. By means of this approach we provide, for the first time, a dynamic picture of magma mixing and magma migration activity prior to and during the 1669 flank eruption of Etna volcano. Following the work of [3] we have studied 10 basaltic lava samples (five SET1 and five SET2 samples) that were erupted from different fissures that opened between 950 and 700 m a.s.l. Following previous work [1-2] we were able to classify different populations of olivine based on their overall core and rim compositional record and the prevalent zoning type (i.e. normal vs. reverse). The core plateau compositions of the SET1 and SET2 olivines range from Fo70 up to Fo83 with a single peak at Fo75-76. The rims differ significantly and can be distinguished into two different groups. Olivine rims from the SET1 samples are generally more evolved and range from Fo50 to Fo64 with a maximum at Fo55-57. SET2 olivine rims vary between Fo65-75 with a peak at Fo69. SET1 and SET2 olivines display normal zonation with cores at Fo75-76 and diverging rim records (Fo55-57 and Fo65-75). The diverging core and rim compositions recorded in the SET1 and SET2 olivines can be attributed to magma evolution possibly in three different magmatic environments (MEs): M1 (=Fo75-76), M2 (=Fo69) and M3 (=Fo55-57) with magma transfer and mixing amongst them. The MEs established in this study differ slightly from those identified in previous works [1-2]. We note the relative lack of olivines with Fo-rich core and rim compositions indicating a major mafic magma

  14. Effects of Changes in Food Supply at the Time of Sex Differentiation on the Gonadal Transcriptome of Juvenile Fish. Implications for Natural and Farmed Populations

    PubMed Central

    Díaz, Noelia; Ribas, Laia; Piferrer, Francesc

    2014-01-01

    Background Food supply is a major factor influencing growth rates in animals. This has important implications for both natural and farmed fish populations, since food restriction may difficult reproduction. However, a study on the effects of food supply on the development of juvenile gonads has never been transcriptionally described in fish. Methods and Findings This study investigated the consequences of growth on gonadal transcriptome of European sea bass in: 1) 4-month-old sexually undifferentiated fish, comparing the gonads of fish with the highest vs. the lowest growth, to explore a possible link between transcriptome and future sex, and 2) testis from 11-month-old juveniles where growth had been manipulated through changes in food supply. The four groups used were: i) sustained fast growth, ii) sustained slow growth, iii) accelerated growth, iv) decelerated growth. The transcriptome of undifferentiated gonads was not drastically affected by initial natural differences in growth. Further, changes in the expression of genes associated with protein turnover were seen, favoring catabolism in slow-growing fish and anabolism in fast-growing fish. Moreover, while fast-growing fish took energy from glucose, as deduced from the pathways affected and the analysis of protein-protein interactions examined, in slow-growing fish lipid metabolism and gluconeogenesis was favored. Interestingly, the highest transcriptomic differences were found when forcing initially fast-growing fish to decelerate their growth, while accelerating growth of initially slow-growing fish resulted in full transcriptomic convergence with sustained fast-growing fish. Conclusions Food availability during sex differentiation shapes the juvenile testis transcriptome, as evidenced by adaptations to different energy balances. Remarkably, this occurs in absence of major histological changes in the testis. Thus, fish are able to recover transcriptionally their testes if they are provided with enough food

  15. Intraspecific Genetic Admixture and the Morphological Diversification of an Estuarine Fish Population Complex

    PubMed Central

    Legault, Michel

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

  16. Intraspecific genetic admixture and the morphological diversification of an estuarine fish population complex.

    PubMed

    Dodson, Julian J; Bourret, Audrey; Barrette, Marie France; Turgeon, Julie; Daigle, Gaétan; Legault, Michel; Lecomte, Frédéric

    2015-01-01

    The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

  17. Strong population genetic structuring in an annual fish, Nothobranchius furzeri, suggests multiple savannah refugia in southern Mozambique

    PubMed Central

    2013-01-01

    Background Intraspecific genetic variation of African fauna has been significantly affected by pronounced climatic fluctuations in Plio-Pleistocene, but, with the exception of large mammals, very limited empirical data on diversity of natural populations are available for savanna-dwelling animals. Nothobranchius furzeri is an annual fish from south-eastern Africa, inhabiting discrete temporary savannah pools outside main river alluvia. Their dispersal is limited and population processes affecting its genetic structure are likely a combination of those affecting terrestrial and aquatic taxa. N. furzeri is a model taxon in ageing research and several populations of known geographical origin are used in laboratory studies. Here, we analysed the genetic structure, diversity, historical demography and temporal patterns of divergence in natural populations of N. furzeri across its entire distribution range. Results Genetic structure and historical demography of N. furzeri were analysed using a combination of mitochondrial (partial cytochrome b sequences, 687 bp) and nuclear (13 microsatellites) markers in 693 fish from 36 populations. Genetic markers consistently demonstrated strong population structuring and suggested two main genetic groups associated with river basins. The split was dated to the Pliocene (>2 Mya). The northern group inhabits savannah pools across the basin of the intermittent river Chefu in south-western Mozambique and eastern Zimbabwe. The southern group (from southernmost Mozambique) is subdivided, with the River Limpopo forming a barrier (maximum divergence time 1 Mya). A strong habitat fragmentation (isolated temporary pools) is reflected in significant genetic structuring even between adjacent pools, with a major influence of genetic drift and significant isolation-by-distance. Analysis of historical demography revealed that the expansion of both groups is ongoing, supported by frequent founder effects in marginal parts of the range and evidence

  18. Impacts of golden alga Prymnesium parvum on fish populations in reservoirs of the upper Colorado River and Brazos River basins, Texas

    USGS Publications Warehouse

    VanLandeghem, Matthew M.; Farooqi, Mukhtar; Farquhar, B.; Patino, Reynaldo

    2013-01-01

    Several reservoirs in the upper Colorado River and Brazos River basins in Texas have experienced toxic blooms of golden alga Prymnesium parvum and associated fish kills since 2001. There is a paucity of information, however, regarding the population-level effects of such kills in large reservoirs, species-specific resistance to or recovery from kills, or potential differences in the patterns of impacts among basins. We used multiple before-after, control-impact analysis to determine whether repeated golden alga blooms have led to declines in the relative abundance and size structure of fish populations. Sustained declines were noted for 9 of 12 fish species surveyed in the upper Colorado River, whereas only one of eight species was impacted by golden alga in the Brazos River. In the upper Colorado River, White Bass Morone chrysops, White Crappie Pomoxis annularis, Largemouth Bass Micropterus salmoides, Bluegill Lepomis macrochirus, River Carpsucker Carpiodes carpio, Freshwater Drum Aplodinotus grunniens, Channel Catfish Ictalurus punctatus, Flathead Catfish Pylodictis olivaris, and Blue Catfish I. furcatus exhibited sustained declines in relative abundance, size structure, or both; Gizzard Shad Dorosoma cepedianum, Longnose Gar Lepisosteus osseus, and Common Carp Cyprinus carpio did not exhibit those declines. In the Brazos River, only the relative abundance of Blue Catfish was impacted. Overall, toxic golden alga blooms can negatively impact fish populations over the long-term, but the patterns of impact can vary considerably among river basins and species. In the Brazos River, populations of most fish species appear to be healthy, suggesting a positive angling outlook for this basin. In the upper Colorado River, fish populations have been severely impacted, and angling opportunities have been reduced. Basin-specific management plans aimed at improving water quality and quantity will likely reduce bloom intensity and allow recovery of fish populations to the

  19. BIAS ASSOCIATED WITH SAMPLING INTERVAL IN REMOVAL METHOD FOR FISH POPULATION ESTIMATES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Population abundance is a fundamental parameter of fisheries science. Accuracy of estimation of population size based on removal methods depend upon on the relationship between catch per effort, cumulative catch and specific underlying assumptions. A study was conducted to determine if increasing t...

  20. Discriminating Multi-Species Populations in Biofilms with Peptide Nucleic Acid Fluorescence In Situ Hybridization (PNA FISH)

    PubMed Central

    Almeida, Carina; Azevedo, Nuno F.; Santos, Sílvio; Keevil, Charles W.; Vieira, Maria J.

    2011-01-01

    Background Our current understanding of biofilms indicates that these structures are typically composed of many different microbial species. However, the lack of reliable techniques for the discrimination of each population has meant that studies focusing on multi-species biofilms are scarce and typically generate qualitative rather than quantitative data. Methodology/Principal Findings We employ peptide nucleic acid fluorescence in situ hybridization (PNA FISH) methods to quantify and visualize mixed biofilm populations. As a case study, we present the characterization of Salmonella enterica/Listeria monocytogenes/Escherichia coli single, dual and tri-species biofilms in seven different support materials. Ex-situ, we were able to monitor quantitatively the populations of ∼56 mixed species biofilms up to 48 h, regardless of the support material. In situ, a correct quantification remained more elusive, but a qualitative understanding of biofilm structure and composition is clearly possible by confocal laser scanning microscopy (CLSM) at least up to 192 h. Combining the data obtained from PNA FISH/CLSM with data from other established techniques and from calculated microbial parameters, we were able to develop a model for this tri-species biofilm. The higher growth rate and exopolymer production ability of E. coli probably led this microorganism to outcompete the other two [average cell numbers (cells/cm2) for 48 h biofilm: E. coli 2,1×108 (±2,4×107); L. monocytogenes 6,8×107 (±9,4×106); and S. enterica 1,4×106 (±4,1×105)]. This overgrowth was confirmed by CSLM, with two well-defined layers being easily identified: the top one with E. coli, and the bottom one with mixed regions of L. monocytogenes and S. enterica. Significance While PNA FISH has been described previously for the qualitative study of biofilm populations, the present investigation demonstrates that it can also be used for the accurate quantification and spatial distribution of species in

  1. Portfolio theory as a management tool to guide conservation and restoration of multi-stock fish populations

    USGS Publications Warehouse

    DuFour, Mark R.; May, Cassandra J.; Roseman, Edward F.; Ludsin, Stuart A.; Vandergoot, Christopher S.; Pritt, Jeremy J.; Fraker, Michael E.; Davis, Jeremiah J.; Tyson, Jeffery T.; Miner, Jeffery G.; Marschall, Elizabeth A.; Mayer, Christine M.

    2015-01-01

    Habitat degradation and harvest have upset the natural buffering mechanism (i.e., portfolio effects) of many large-scale multi-stock fisheries by reducing spawning stock diversity that is vital for generating population stability and resilience. The application of portfolio theory offers a means to guide management activities by quantifying the importance of multi-stock dynamics and suggesting conservation and restoration strategies to improve naturally occurring portfolio effects. Our application of portfolio theory to Lake Erie Sander vitreus (walleye), a large population that is supported by riverine and open-lake reef spawning stocks, has shown that portfolio effects generated by annual inter-stock larval fish production are currently suboptimal when compared to potential buffering capacity. Reduced production from riverine stocks has resulted in a single open-lake reef stock dominating larval production, and in turn, high inter-annual recruitment variability during recent years. Our analyses have shown (1) a weak average correlation between annual river and reef larval production (ρ̄ = 0.24), suggesting that a natural buffering capacity exists in the population, and (2) expanded annual production of larvae (potential recruits) from riverine stocks could stabilize the fishery by dampening inter-annual recruitment variation. Ultimately, our results demonstrate how portfolio theory can be used to quantify the importance of spawning stock diversity and guide management on ecologically relevant scales (i.e., spawning stocks) leading to greater stability and resilience of multi-stock populations and fisheries.

  2. The effects of climate change on the phenology of selected Estonian plant, bird and fish populations.

    PubMed

    Ahas, Rein; Aasa, Anto

    2006-09-01

    This paper summarises the trends of 943 phenological time-series of plants, fishes and birds gathered from 1948 to 1999 in Estonia. More than 80% of the studied phenological phases have advanced during springtime, whereas changes are smaller during summer and autumn. Significant values of plant and bird phases have advanced 5-20 days, and fish phases have advanced 10-30 days in the spring period. Estonia's average air temperature has become significantly warmer in spring, while at the same time a slight decrease in air temperature has been detected in autumn. The growing season has become significantly longer in the maritime climate area of Western Estonia. The investigated phenological and climate trends are related primarily to changes in the North Atlantic Oscillation Index (NAOI) during the winter months. Although the impact of the winter NAOI on the phases decreases towards summer, the trends of the investigated phases remain high. The trends of phenophases at the end of spring and the beginning of summer may be caused by the temperature inertia of the changing winter, changes in the radiation balance or the direct consequences of human impacts such as land use, heat islands or air pollution. PMID:16738902

  3. The Use of Advanced Hydroelectric Turbines to Improve Water Quality and Fish Populations

    SciTech Connect

    Brookshier, P A; Cada, G F; Flynn, J V; Rinehart, B N; Sale, M J; Sommers, G L

    1999-09-20

    Hydroelectric power contributes about 10 percent of the electrical energy generated in the United States, and nearly 20 percent of the world's electrical energy. It is a renewable energy source that can contribute significantly to reduction of greenhouse gases by offsetting conventional carbon-based electricity generation. However, rather than growing in importance, hydroelectric generation has actually declined in recent years, often as a consequence of environmental concerns centering around (1) restriction of upstream and downstream fish passage by the dam, and (2) alteration of water quality and river flows by the impoundment. The Advanced Hydropower Turbine System (AHTS) Program of the U.S. Department of Energy is developing turbine technology which would help to maximize global hydropower resources while minimizing adverse environmental effects. Major technical goals for the Program are (1) the reduction of mortality among turbine-passed fish to 2 percent or less, compared to current levels ranging up to 30 percent or greater; and (2) development of aerating turbines that would ensure that water discharged from reservoirs has a dissolved oxygen concentration of at least 6 mg/L. These advanced, "environmentally friendly" turbines would be suitable both for new hydropower installations and for retrofitting at existing dams. Several new turbine designs that have been developed in the initial phases of the AHTS program are described.

  4. Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses.

    PubMed

    Allers, Elke; Moraru, Cristina; Duhaime, Melissa B; Beneze, Erica; Solonenko, Natalie; Barrero-Canosa, Jimena; Amann, Rudolf; Sullivan, Matthew B

    2013-08-01

    Microbes drive the biogeochemical cycles that fuel planet Earth, and their viruses (phages) alter microbial population structure, genome repertoire, and metabolic capacity. However, our ability to understand and quantify phage-host interactions is technique-limited. Here, we introduce phageFISH - a markedly improved geneFISH protocol that increases gene detection efficiency from 40% to > 92% and is optimized for detection and visualization of intra- and extracellular phage DNA. The application of phageFISH to characterize infection dynamics in a marine podovirus-gammaproteobacterial host model system corroborated classical metrics (qPCR, plaque assay, FVIC, DAPI) and outperformed most of them to reveal new biology. PhageFISH detected both replicating and encapsidated (intracellular and extracellular) phage DNA, while simultaneously identifying and quantifying host cells during all stages of infection. Additionally, phageFISH allowed per-cell relative measurements of phage DNA, enabling single-cell documentation of infection status (e.g. early vs late stage infections). Further, it discriminated between two waves of infection, which no other measurement could due to population-averaged signals. Together, these findings richly characterize the infection dynamics of a novel model phage-host system, and debut phageFISH as a much-needed tool for studying phage-host interactions in the laboratory, with great promise for environmental surveys and lineage-specific population ecology of free phages. PMID:23489642

  5. The Genetic Basis for Chemical Tolerance in a Wild Population of the Estuarine Fish, Fundulus heterclitus

    EPA Science Inventory

    Wild populations of the killifish Fundulus heteroclitus residing in heavily contaminated North American Atlantic coast estuaries have recently and independently evolved dramatic, heritable, and adaptive polychlorinated biphenyl (PCB) tolerance. However, currently available genomi...

  6. Genomic tools for understanding chemical tolerance in a wild population of the estuarine fish, Fundulus heteroclitus

    EPA Science Inventory

    Wild populations of the killifish Fundulus heteroclitus residing in heavily contaminated North American Atlantic coast estuaries have recently and independently evolved dramatic, heritable, and adaptive polychlorinated biphenyl (PCB) tolerance. However, currently available genomi...

  7. FUNCTIONAL IMPLICATION OF MAJOR HISTOCOMPATIBILITY (MH) VARIATION USING AN ESTUARINE FISH POPULATION

    EPA Science Inventory

    Recently, there has been a dramatic expansion of studies of major histocompatibility complex (MHC) variation aimed at discovering functional differences in immunity across wild populations of diverse vertebrate species. Some species with relatively low genetic diversity or under ...

  8. Effects of benzo[a]pyrene exposure on a fish population resistant to the toxic effects of dioxin-like compounds.

    PubMed

    Nacci, Diane E; Kohan, Michael; Pelletier, Marguerite; George, Elizabeth

    2002-06-01

    Effects of a model polycyclic aromatic hydrocarbon (PAH) were compared in populations of the estuarine fish Fundulus heteroclitus indigenous to a reference site and one highly contaminated with polychlorinated biphenyls (PCBs) and other compounds. The fish population resident to the PCB-contaminated site is genetically resistant to those PCB congeners categorized as dioxin-like compounds (DLCs) that act through the aryl hydrocarbon receptor (AHR). In response to DLC exposures, these DLC-resistant fish showed poor inducibility for enzymes known to be regulated by the AHR pathway and important for the metabolism of xenobiotics including some PAHs that also act as AHR agonists. Therefore, a laboratory study using the model PAH, benzo[a]pyrene (BaP), was conducted to evaluate how PAHs might affect these wild fish populations that differed in their inherent sensitivities to DLCs and in their tissue concentrations of contaminants. Following BaP treatment, the activities of two xenobiotic metabolizing enzymes and the concentrations of BaP-DNA adducts, as measured using the 32P-postlabeling method, were lower in the livers of DLC-resistant than reference fish. These results suggest that DLC-resistance could provide protection following chronic exposures to PAHs from the long-term consequences of DNA adduct formation, such as cancer. Alternatively, reduced metabolism and elimination of toxic or photo-activated PAHs could have acute consequences to the health and reproduction of these DLC-resistant fish and their progeny. These fish populations provide useful models to evaluate the potential costs and benefits of genetic adaptation in wildlife populations subject to anthropogenic stress. PMID:11932001

  9. Environmental diel variation, parasite loads, and local population structuring of a mixed-mating mangrove fish.

    PubMed

    Ellison, Amy; Wright, Patricia; Taylor, D Scott; Cooper, Chris; Regan, Kelly; Currie, Suzie; Consuegra, Sofia

    2012-07-01

    Genetic variation within populations depends on population size, spatial structuring, and environmental variation, but is also influenced by mating system. Mangroves are some of the most productive and threatened ecosystems on earth and harbor a large proportion of species with mixed-mating (self-fertilization and outcrossing). Understanding population structuring in mixed-mating species is critical for conserving and managing these complex ecosystems. Kryptolebias marmoratus is a unique mixed-mating vertebrate inhabiting mangrove swamps under highly variable tidal regimes and environmental conditions. We hypothesized that geographical isolation and ecological pressures influence outcrossing rates and genetic diversity, and ultimately determine the local population structuring of K. marmoratus. By comparing genetic variation at 32 microsatellites, diel fluctuations of environmental parameters, and parasite loads among four locations with different degrees of isolation, we found significant differences in genetic diversity and genotypic composition but little evidence of isolation by distance. Locations also differed in environmental diel fluctuation and parasite composition. Our results suggest that mating system, influenced by environmental instability and parasites, underpins local population structuring of K. marmoratus. More generally, we discuss how the conservation of selfing species inhabiting mangroves and other biodiversity hotspots may benefit from knowledge of mating strategies and population structuring at small spatial scales. PMID:22957172

  10. Health and human rights in eastern Myanmar prior to political transition: a population-based assessment using multistaged household cluster sampling

    PubMed Central

    2014-01-01

    Background Myanmar/Burma has received increased development and humanitarian assistance since the election in November 2010. Monitoring the impact of foreign assistance and economic development on health and human rights requires knowledge of pre-election conditions. Methods From October 2008-January 2009, community-based organizations conducted household surveys using three-stage cluster sampling in Shan, Kayin, Bago, Kayah, Mon and Tanintharyi areas of Myanmar. Data was collected from 5,592 heads of household on household demographics, reproductive health, diarrhea, births, deaths, malaria, and acute malnutrition of children 6–59 months and women aged 15–49 years. A human rights focused survey module evaluated human rights violations (HRVs) experienced by household members during the previous year. Results Estimated infant and under-five rates were 77 (95% CI 56 to 98) and 139 (95% CI 107 to 171) deaths per 1,000 live births; and the crude mortality rate was 13 (95% CI 11 to 15) deaths per thousand persons. The leading respondent-reported cause of death was malaria, followed by acute respiratory infection and diarrhea, causing 21.2% (95% CI 16.5 to 25.8), 16.6% (95% CI 11.8 to 21.4), and 12.3% (95% CI 8.7 to 15.8), respectively. Over a third of households suffered at least one human rights violation in the preceding year (36.2%; 30.7 to 41.7). Household exposure to forced labor increased risk of death among infants (rate ratio (RR) = 2.2; 95% CI 1.1 to 4.4) and children under five (RR = 2.1; 95% CI 1.3 to 3.6). The proportion of children suffering from moderate to severe acute malnutrition was higher among households that were displaced (prevalence ratio (PR) = 3.3; 95% CI 1.9 to 5.6). Conclusions Prior to the 2010 election, populations of eastern Myanmar experienced high rates of disease and death and high rates of HRVs. These population-based data provide a baseline that can be used to monitor national and international efforts to improve the

  11. Controls of stream chemistry and fish populations in the Neversink watershed, Catskill Mountains, New York

    USGS Publications Warehouse

    Lawrence, Gregory B.; Burns, Douglas A.; Baldigo, Barry P.; Murdoch, Peter S.; Lovett, Gary M.

    2001-01-01

    The Neversink Watershed Study was initiated in 1991 to develop an understanding of the key natural processes that control water quality within the forested, 166 km 2 (64 mi 2 ),Neversink River watershed;part of the New York City drinking water supply system,in the Catskill Mountain region of New York.The study entailed (1)hydrological investigations of water movement from the atmosphere to streams,(2) biogeochemical investigations of nitrogen and calcium,important nutrients in forest and aquatic ecosystems whose availability has been altered by acidic deposition,(3)an investigation of elevational patterns in atmospheric deposition,and (4)fisheries investigations to determine the relative importance of physical habitat and acidic deposition in controlling the abundance and diversity of fish species in the watershed.This report summarizes the results of these investigations,which have also been presented, in detail,in peer-reviewed technical articles and reports that are cited throughout the text.

  12. Native and nonnative fish populations of the Colorado River are food limited--evidence from new food web analyses

    USGS Publications Warehouse

    Kennedy, Theodore A.; Cross, Wyatt F.; Hall, Robert O., Jr.; Baxter, Colden V.; Rosi-Marshall, Emma J.

    2013-01-01

    Fish populations in the Colorado River downstream from Glen Canyon Dam appear to be limited by the availability of high-quality invertebrate prey. Midge and blackfly production is low and nonnative rainbow trout in Glen Canyon and native fishes in Grand Canyon consume virtually all of the midge and blackfly biomass that is produced annually. In Glen Canyon, the invertebrate assemblage is dominated by nonnative New Zealand mudsnails, the food web has a simple structure, and transfers of energy from the base of the web (algae) to the top of the web (rainbow trout) are inefficient. The food webs in Grand Canyon are more complex relative to Glen Canyon, because, on average, each species in the web is involved in more interactions and feeding connections. Based on theory and on studies from other ecosystems, the structure and organization of Grand Canyon food webs should make them more stable and less susceptible to large changes following perturbations of the flow regime relative to food webs in Glen Canyon. In support of this hypothesis, Grand Canyon food webs were much less affected by a 2008 controlled flood relative to the food web in Glen Canyon.

  13. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, North East Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Godbold, J. A.; Bailey, D. M.; Collins, M. A.; Gordon, J. D. M.; Spallek, W. A.; Priede, I. G.

    2012-08-01

    A time series from 1977-1989 and 2000-2002 of scientific trawl surveys in the Porcupine Seabight and adjacent Abyssal Plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the on-set of the commercial deep-water fishery in the late 1970s and the on-set of the regulation of the fishery in the early 2000's and allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, changes in the biomass (kg km2) depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m). Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57%) and non-target (e.g. Coryphaenoides guentheri and Antimora rostrata) species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 2 species (Coryphaenoides armatus, Synaphobranchus kaupii), but only at depths greater than 1800 m (outside the maximum depth for commercial trawling). This suggests that whilst there is evidence for likely fisheries impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  14. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, Northeast Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Godbold, J. A.; Bailey, D. M.; Collins, M. A.; Gordon, J. D. M.; Spallek, W. A.; Priede, I. G.

    2013-01-01

    A time series from 1977-1989 and 2000-2002 of scientific trawl surveys in the Porcupine Seabight and adjacent abyssal plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the onset of the commercial deep-water fishery in the late 1970s and the onset of the regulation of the fishery in the early 2000's, which allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, as well as changes in the biomass (kg km-2) depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m). Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57%) and non-target (e.g. C. guentheri and Antimora rostrata) species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 5 out of the 8 dominant species occupying depth ranges both within and outside the maximum depth for commercial trawling. This suggests that whilst there is evidence for likely fishery impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  15. Concordant mitochondrial and nuclear DNA phylogenies for populations of the teleost fish Fundulus heteroclitus.

    PubMed Central

    Bernardi, G; Sordino, P; Powers, D A

    1993-01-01

    Molecular phylogenies using mitochondrial DNA and nuclear alleles of the lactate dehydrogenase B locus were found to be concordant for populations of Fundulus heteroclitus ranging from Canada to Florida. Both mitochondrial DNA and lactate dehydrogenase alleles show a clear separation between the northern individuals (from Nova Scotia and Maine) and the southern ones (from Georgia and Florida), with a mixed population found in the geographic intermediate (New Jersey). An historical isolation, possibly as ancient as 0.5-1 million years old, may have played a role in shaping the situation observed today. PMID:8105474

  16. COMPLIANCE STUDIES: WHAT ABOUT THE FISH?

    SciTech Connect

    Woodley, Christa M.; Fischer, Eric S.; Wagner, Katie A.; Weiland, Mark A.; Eppard, M. B.; Carlson, Thomas J.

    2013-08-21

    ABSTRACT It is understood that operational and structural conditions at hydroelectric facilities along with environmental conditions of the migration corridors affect the passage conditions for fish. Hydropower fish survival assessments at the individual- and population-level have progressed over the past decade with development of turbine simulation software and improvements in telemetry systems, in particular, micro-transmitters, cabled and autonomous receivers, and advanced statistical designs that provide precise estimates of passage routes and dam-passage survival. However, these approaches often ignore fish condition as a variable in passage and survival analyses. To account for fish condition effects on survival results, compliance statistical models often require increased numbers of tagged fish. For example, prior to and during migration, fish encounter numerous stressors (e.g., disease, predation, contact with structures, decompression events), all of which can cause physical and physiological stress, altering the probability of survival after passage through a dam or a series of dams. In addition, the effects of surgical transmitter implantation process or the transmitter itself may cause physiological stress, alter behavior, and/or decrease survival. Careful physiological evaluations can augment survival model assumptions, resultant data, and predictive scenarios. To exemplify this, surgeons concurrently noted fish condition and surgical implantation during a multi-dam compliance study in 2011. The analyses indicted that surgeon observations on fish condition and surgical outcomes were related to 24 h holding mortalities and fish that never detected after release. Short reach and long reach survival were related to surgical outcomes and fish condition, respectively.

  17. Density dependence in marine fish populations revealed at small and large spatial scales.

    PubMed

    Johnson, Darren W

    2006-02-01

    Experimental manipulation of population density has frequently been used to demonstrate demographic density dependence. However, such studies are usually small scale and typically provide evidence of spatial (within-generation) density dependence. It is often unclear whether small-scale, experimental tests of spatial density dependence will accurately describe temporal (between-generation) density dependence required for population regulation. Understanding the mechanisms generating density dependence may provide a link between spatial experiments and temporal regulation of populations. In this study, I manipulated the density of recently settled kelp rockfish (Sebastes atrovirens) in both the presence and absence of predators to test for density-dependent mortality and whether predation was the mechanism responsible. I also examined mortality of rockfish cohorts within kelp beds throughout central California to evaluate temporal (between-generation) density dependence in mortality. Experiments suggested that short-term behavioral responses of predators and/or a shortage of prey refuges caused spatial density dependence. Temporal density dependence in mortality was also detected at larger spatial scales for several species of rockfish. It is likely that short-term responses of predators generated both spatial and temporal density dependence in mortality. Spatial experiments that describe the causal mechanisms generating density dependence may therefore be valuable in describing temporal density dependence and population regulation. PMID:16637357

  18. EXTREME CLONAL DIVERSITY AND DIVERGENCE IN POPULATIONS OF A SELFING HERMAPHRODITIC FISH

    EPA Science Inventory

    Recombination is unknown in natural populations of Rivulus marmoratus, a selfing hermaphrodite, and genetic variation is likely due to mutation alone. NA fingerprinting with an array of microsatellite (e.g., (CT)9,) and minisatellite (e.g. the "33.15 core sequence") probes reveal...

  19. ABUNDANT MALES IN POPULATIONS OF A SELFING HERMAPHRODITE FISH, RIVULUS MARMORATUS, FROM SOME BELIZE CAYS

    EPA Science Inventory

    Fewer than 10 males of the only known vertebrate selfing hermaphrodite, the killifish Rivulus marmoratus, have previously been collected in natural populations scattered from southeast Brazil to Florida. ecent collections (1988-89) from small islands (cays) off the coast of Beliz...

  20. Diverse juvenile life-history behaviours contribute to the spawning stock of an anadromous fish population

    USGS Publications Warehouse

    Walsworth, Timothy E.; Schindler, Daniel E.; Griffiths, Jennifer R.; Zimmerman, Christian E.

    2015-01-01

    Habitat quality often varies substantially across space and time, producing a shifting mosaic of growth and mortality trade-offs across watersheds. Traditional studies of juvenile habitat use have emphasised the evolution of single optimal strategies that maximise recruitment to adulthood and eventual fitness. However, linking the distribution of individual behaviours that contribute to recruitment at the population level has been elusive, particularly for highly fecund aquatic organisms. We examined juvenile habitat use within a population of sockeye salmon (Oncorhynchus nerka) that spawn in a watershed consisting of two interconnected lakes and a marine lagoon. Otolith microchemical analysis revealed that the productive headwater lake accounted for about half of juvenile growth for those individuals surviving to spawn in a single river in the upper watershed. However, 47% of adults had achieved more than half of their juvenile growth in the downstream less productive lake, and 3% of individuals migrated to the estuarine environment during their first summer and returned to freshwater to overwinter before migrating back to sea. These results describe a diversity of viable habitat-use strategies by juvenile sockeye salmon that may buffer the population against poor conditions in any single rearing environment, reduce density-dependent mortality and have implications for the designation of critical habitat for conservation purposes. A network of accessible alternative habitats providing trade-offs in growth and survival may be important for long-term viability of populations.

  1. Fish Rhabdoviruses

    USGS Publications Warehouse

    Kurath, G.; Winton, J.

    2008-01-01

    Many important viral pathogens of fish are members of the family Rhabdoviridae. The viruses in this large group cause significant losses in populations of wild fish as well as among fish reared in aquaculture. Fish rhabdoviruses often have a wide host and geographic range, and infect aquatic animals in both freshwater and seawater. The fish rhabdoviruses comprise a diverse collection of isolates that can be placed in one of two quite different groups: isolates that are members of the established genusNovirhabdovirus, and those that are most similar to members of the genus Vesiculovirus. Because the diseases caused by fish rhabdoviruses are important to aquaculture, diagnostic methods for their detection and identification are well established. In addition to regulations designed to reduce the spread of fish viruses, a significant body of research has addressed methods for the control or prevention of diseases caused by fish rhabdoviruses, including vaccination. The number of reported fish rhabdoviruses continues to grow as a result of the expansion of aquaculture, the increase in global trade, the development of improved diagnostic methods, and heightened surveillance activities. Fish rhabdoviruses serve as useful components of model systems to study vertebrate virus disease, epidemiology, and immunology.

  2. Establishment of a coastal fish in the Azores: recent colonisation or sudden expansion of an ancient relict population?

    PubMed

    Stefanni, S; Castilho, R; Sala-Bozano, M; Robalo, J I; Francisco, S M; Santos, R S; Marques, N; Brito, A; Almada, V C; Mariani, S

    2015-12-01

    The processes and timescales associated with ocean-wide changes in the distribution of marine species have intrigued biologists since Darwin's earliest insights into biogeography. The Azores, a mid-Atlantic volcanic archipelago located >1000 km off the European continental shelf, offers ideal opportunities to investigate phylogeographic colonisation scenarios. The benthopelagic sparid fish known as the common two-banded seabream (Diplodus vulgaris) is now relatively common along the coastline of the Azores archipelago, but was virtually absent before the 1990 s. We employed a multiple genetic marker approach to test whether the successful establishment of the Azorean population derives from a recent colonisation from western continental/island populations or from the demographic explosion of an ancient relict population. Results from nuclear and mtDNA sequences show that all Atlantic and Mediterranean populations belong to the same phylogroup, though microsatellite data indicate significant genetic divergence between the Azorean sample and all other locations, as well as among Macaronesian, western Iberian and Mediterranean regions. The results from Approximate Bayesian Computation indicate that D. vulgaris has likely inhabited the Azores for ∼ 40 (95% confidence interval (CI): 5.5-83.6) to 52 (95% CI: 6.32-89.0) generations, corresponding to roughly 80-150 years, suggesting near-contemporary colonisation, followed by a more recent demographic expansion that could have been facilitated by changing climate conditions. Moreover, the lack of previous records of this species over the past century, together with the absence of lineage separation and the presence of relatively few private alleles, do not exclude the possibility of an even more recent colonisation event. PMID:26174025

  3. Establishment of a coastal fish in the Azores: recent colonisation or sudden expansion of an ancient relict population?

    PubMed Central

    Stefanni, S; Castilho, R; Sala-Bozano, M; Robalo, J I; Francisco, S M; Santos, R S; Marques, N; Brito, A; Almada, V C; Mariani, S

    2015-01-01

    The processes and timescales associated with ocean-wide changes in the distribution of marine species have intrigued biologists since Darwin's earliest insights into biogeography. The Azores, a mid-Atlantic volcanic archipelago located >1000 km off the European continental shelf, offers ideal opportunities to investigate phylogeographic colonisation scenarios. The benthopelagic sparid fish known as the common two-banded seabream (Diplodus vulgaris) is now relatively common along the coastline of the Azores archipelago, but was virtually absent before the 1990s. We employed a multiple genetic marker approach to test whether the successful establishment of the Azorean population derives from a recent colonisation from western continental/island populations or from the demographic explosion of an ancient relict population. Results from nuclear and mtDNA sequences show that all Atlantic and Mediterranean populations belong to the same phylogroup, though microsatellite data indicate significant genetic divergence between the Azorean sample and all other locations, as well as among Macaronesian, western Iberian and Mediterranean regions. The results from Approximate Bayesian Computation indicate that D. vulgaris has likely inhabited the Azores for ∼40 (95% confidence interval (CI): 5.5–83.6) to 52 (95% CI: 6.32–89.0) generations, corresponding to roughly 80–150 years, suggesting near-contemporary colonisation, followed by a more recent demographic expansion that could have been facilitated by changing climate conditions. Moreover, the lack of previous records of this species over the past century, together with the absence of lineage separation and the presence of relatively few private alleles, do not exclude the possibility of an even more recent colonisation event. PMID:26174025

  4. Population Density of the Crayfish, Orconectes limosus, in Relation to Fish and Macroinvertebrate Densities in a Small Mesotrophic Lake - Implications for the Lake's Food Web

    NASA Astrophysics Data System (ADS)

    Haertel-Borer, Susanne S.; Zak, Dominik; Eckmann, Reiner; Baade, Ulrich; Hölker, Franz

    2005-12-01

    The population density of Orconectes limosus in a mesotrophic lake was assessed in the context of fish and macroinvertebrate biomasses, and crayfish consumption by fish. The average O. limosus (6 cm total length) abundance and biomass in the littoral zone was 2200 ind ha-1 and 32.2 kg ha1, respectively. O. limosus biomass accounted for a large percentage (49%) of the lake's macroinvertebrate biomass. O. limosus was equal to 35% of the non-predatory fish biomass and to 81% of the predatory fish biomass. O. limosus comprised 15 and 48% of the annual consumption of pike and predatory perch, respectively. Altogether, O. limosus was identified as quantitatively important for the lake's littoral food web, and might also subsidize the pelagic food web. This strengthens the need for an integrated view on lake food webs.

  5. A fish of many scales: extrapolating sublethal pesticide exposures to the productivity of wild salmon populations.

    PubMed

    Baldwin, David H; Spromberg, Julann A; Collier, Tracy K; Scholz, Nathaniel L

    2009-12-01

    For more than a decade, numerous pesticides have been detected in river systems of the western United States that support anadromous species of Pacific salmon and steelhead. Over the same interval, several declining wild salmon populations have been listed as either threatened or endangered under the U.S. Endangered Species Act (ESA). Because pesticides occur in surface waters that provide critical habitat for ESA-listed stocks, they are an ongoing concern for salmon conservation and recovery throughout California and the Pacific Northwest. Because pesticide exposures are typically sublethal, a key question is whether toxicological effects at (or below) the scale of the individual animal ultimately reduce the productivity and recovery potential of wild populations. In this study we evaluate how the sublethal impacts of pesticides on physiology and behavior can reduce the somatic growth of juvenile chinook salmon (Oncorhynchus tshawytscha) and, by extension, subsequent size-dependent survival when animals migrate to the ocean and overwinter in their first year. Our analyses focused on the organophosphate and carbamate classes of insecticides. These neurotoxic chemicals have been widely detected in aquatic environments. They inhibit acetylcholinesterase, an enzyme in the salmon nervous system that regulates neurotransmitter-mediated signaling at synapses. Based on empirical data, we developed a model that explicitly links sublethal reductions in acetylcholinesterase activity to reductions in feeding behavior, food ration, growth, and size at migration. Individual size was then used to estimate size-dependent survival during migration and transition to the sea. Individual survival estimates were then integrated into a life-history population projection matrix and used to calculate population productivity and growth rate. Our results indicate that short-term (i.e., four-day) exposures that are representative of seasonal pesticide use may be sufficient to reduce the

  6. Fish consumption and other characteristics of reproductive-aged Michigan anglers--a potential population for studying the effects of consumption of Great Lakes fish on reproductive health.

    PubMed

    Courval, J M; DeHoog, J V; Holzman, C B; Tay, E M; Fischer, L; Humphrey, H E; Paneth, N S; Sweeney, A M

    1996-01-01

    There has been considerable interest in the benefits and risks of eating Great Lakes fish, particularly with regard to reproductive health. We report the results of a survey conducted from 1993-1995 among Michigan anglers. The survey was designed to identify a reproductive-aged cohort of persons who consume high or low levels of Great Lakes fish in order to study the impact of polyhalogenated biphenyl (PHB) compounds and other toxins on human reproduction outcomes. Using fishing license data obtained from the Michigan Department of Natural Resources, we identified anglers of early reproductive age (18-34 years) in ten Michigan counties. The screening survey ascertained demographic, behavioral, fish consumption, and reproductive history information on anglers and their partners. Over 4,000 angler households were contacted. One thousand nine hundred fifty questionnaires were returned from 1,168 households. The median age of respondents was 30 years; 58% were male and 64% reported being married. Slightly more than one-half the respondents had attended or graduated from college, and less than 10% had not completed high school. In the past year, most respondents (46%) reported having eaten sport-caught fish 1-12 times, while 20% reported having eaten no sport-caught fish; 20% had consumed 13-24 meals. More sport-caught fish was consumed in the spring and summer than in the fall and winter, and males reported eating more fish than females. About 43% of our respondents reported that they intend to have one or more children in the next five years. Of these respondents, 287 couples had no identified impairments to reproduction and therefore would be eligible to participate in the future reproductive study. PMID:8843552

  7. Biological monitoring of the impacts of the Ok Tedi copper mine on fish populations in the Fly River system, Papua New Guinea.

    PubMed

    Swales, S; Storey, A W; Roderick, I D; Figa, B S; Bakowa, K A; Tenakanai, C D

    1998-06-18

    Monitoring of the impacts of the Ok Tedi copper mine on fish populations in the Fly River system in Papua New Guinea has recorded approx. 100 species of fish representing 32 families. Fish catches have shown considerable temporal and spatial variability but, since the commencement of mine operations and the input of mine-derived waste material into the headwaters of the system, long-term monitoring has revealed significant reductions in fish catches at most riverine sites in the Ok Tedi, upper and middle Fly River. However, no significant declines in fish catches have been recorded in the lower Fly or delta areas. Possible mechanisms accounting for the declines in fish catches in the river are discussed. Although catches in some floodplain habitats have also declined, these changes are thought to be associated with the effects of natural climatic phenomena, particularly El Nino droughts. Introduced species and increased commercial and artisanal fishing may also have had an effect. Levels of copper, zinc, lead and cadmium were found to be elevated in tissues from a range of fish species taken from riverine and floodplain sites sampled in the Ok Tedi and Fly Rivers. Metal levels were generally much higher in liver and kidney than from flesh. There was a general trend for metal concentrations to decrease with distance downstream from the mine, suggesting a mine-related effect. Significantly higher metal concentrations were recorded at 'impact' compared to 'control' sites. The intake of dietary copper by humans consuming fish taken from the river is well within guidelines set by the World Health Organisation and does not constitute a health risk. Ok Tedi Mining Limited has recently initiated a programme of mitigation works aimed at reducing the adverse effects of mine wastes on the river environment. PMID:9646519

  8. Evaluation of Fish Movements, Migration Patterns, and Population Abundance with Streamwidth PIT Tag Interrogation Systems, Final Report 2002.

    SciTech Connect

    Zydlewski, Gayle; Winter, Christiane; McClanahan, Dee

    2003-02-01

    (approximately 5,400). All species used the faster moving/deeper section of the creek at both SPIs. A backpack PIT tag detector was also developed and used as another remote 'recapture' for additional accuracy in estimating population survival and recapture probability. This unit was used at an approximate efficiency of 24% to survey the creek after the Spring migration. Twenty-five individual fish were re-located. All PIT tag data were used to calculate survival and recapture probabilities using the Cormack-Jolly-Seber population model. Survival for steelhead was high and recapture probability depended greatly on season. Probability of recapture was highest in Spring (29.5%) and relatively low in all other seasons (< 7% in Fall, Winter, and Summer). Wild steelhead PIT tagged in the field and returned to the laboratory had a tag retention rate of 97.6%. A laboratory study was designed to determine the effects of 3-sized PIT tags (12 mm, 20 mm, and 23 mm) on survival and growth of individuals. Survival from surgical implantation of 23 mm PIT tags was > 98% for fish (coho salmon and steelhead). Retention of 23 mm PIT tags was 100% for coho salmon and 89% for steelhead. For both coho and steelhead, growth rates during the first month were affected by tagging, but by the end of 2 months growth effects equalized for all tag sizes. Life history characteristics quantified with SPI techniques are comparable to standard techniques. For example, peaks of Spring migration for steelhead and cutthroat were amazingly similar to those reported from the screw trap. These techniques will enable application of less laborious methods which are more accurate at estimating life history parameters.

  9. Evaluation of Fish Movements, Migration Patterns and Populations Abundance with Streamwidth PIT Tag Interrogation Systems, Final Report 2002.

    SciTech Connect

    Zydlewski, Gayle B.; Casey, Sean

    2003-02-01

    (approximately 5,400). All species used the faster moving/deeper section of the creek at both SPIs. A backpack PIT tag detector was also developed and used as another remote ''recapture'' for additional accuracy in estimating population survival and recapture probability. This unit was used at an approximate efficiency of 24% to survey the creek after the Spring migration. Twenty-five individual fish were re-located. All PIT tag data were used to calculate survival and recapture probabilities using the Cormack-Jolly-Seber population model. Survival for steelhead was high and recapture probability depended greatly on season. Probability of recapture was highest in Spring (29.5%) and relatively low in all other seasons (< 7% in Fall, Winter, and Summer). Wild steelhead PIT tagged in the field and returned to the laboratory had a tag retention rate of 97.6%. A laboratory study was designed to determine the effects of 3-sized PIT tags (12 mm, 20 mm, and 23 mm) on survival and growth of individuals. Survival from surgical implantation of 23 mm PIT tags was > 98% for fish (coho salmon and steelhead). Retention of 23 mm PIT tags was 100% for coho salmon and 89% for steelhead. For both coho and steelhead, growth rates during the first month were affected by tagging, but by the end of 2 months growth effects equalized for all tag sizes. Life history characteristics quantified with SPI techniques are comparable to standard techniques. For example, peaks of Spring migration for steelhead and cutthroat were amazingly similar to those reported from the screw trap. These techniques will enable application of less laborious methods which are more accurate at estimating life history parameters.

  10. Evaluation of genetic diversity and population structure in a commercially important freshwater fish Prochilodus costatus (Characiformes, Prochilodontidae) using complex hypervariable repeats.

    PubMed

    Barroca, T M; Santos, G B; Duarte, N V R; Kalapothakis, E

    2012-01-01

    We used complex hypervariable repeats to evaluate the genetic diversity and structure of Prochilodus costatus (Characiformes), an ecologically and economically important species endemic to the São Francisco River basin. Hydroelectric dams along the river have led to population fragmentation, which can limit gene flow. Restocking from hatcheries has been used to repopulate declining populations. To determine how fragmentation and hatchery supplementation affect P. costatus population structure, we studied populations from three sites up and downstream of the Gafanhoto Dam (Pará River, State of Minas Gerais). High levels of genetic diversity were found within populations (0.926 to 0.873); the three populations showed significant differentiation (F(ST) = 0.16), suggesting that populations from the three sites were affected by fragmentation of the river and by hatchery contributions. These results will be useful for developing a management and conservation plan for fish species in this area. PMID:23079996

  11. Effect of pond water depth on snail populations and fish-borne zoonotic trematode transmission in juvenile giant gourami (Osphronemus goramy) aquaculture nurseries.

    PubMed

    Thien, P C; Madsen, H; Nga, H T N; Dalsgaard, A; Murrell, K D

    2015-12-01

    Infection with fish-borne zoonotic trematodes (FZT) is an important public health problem in many parts of Southeast Asia. People become infected with FZT when eating raw or undercooked fish that contain the infective stage (metacercariae) of FZT. The parasites require specific freshwater snails as first intermediate host and a variety of fish species, both wild caught and cultured, as second intermediate host. Aquaculture production has grown almost exponentially in SE Asia and in order to produce fish free from FZT metacercariae, it is important to mitigate factors promoting transmission to fish. Here we report results from a cross-sectional study to look at the association between pond depth and infection with FZT in giant gourami nursery ponds. Density of intermediate host snails was positively associated with pond depth (count ratio associated with a 1m increase in pond depth was 10.4 (95% C.L.: 1.61-67.1, p<0.5)) and this may partly explain the higher prevalence and intensity of FZT infection in juvenile fish. High fry stocking density (>200 fry m(-3)) was associated with lower host snail density (count ratio=0.15) than low stocking density (<100 fry m(3)). Ponds stocked with 100-200 fry m(-3) had snail counts 0.76 (95% C.L.: 0.33-1.75, p n.s.) of those in ponds stocked with fry density of <100 fry m(-3). Since density of intermediate snail hosts was associated with FZT transmission to fish, effort should be taken to reduce snail density prior to stocking the fry, but focus should also be on habitats surrounding ponds as transmission may occur through cercariae produced outside ponds and carried into ponds with water pumped into ponds. PMID:26209455

  12. Fish mycobacteriosis (Tuberculosis)

    USGS Publications Warehouse

    Parisot, T.J.; Wood, J.W.

    1959-01-01

    The etiologic agent for the bacterial disease, "fish tuberculosis" (more correctly "mycobacteriosis"), was first observed in carp in 189& from a pond in France. Subsequently similar agents have been isolated from or observed in fish in fresh water, salt water, and brackish water, in fish in aquaria, hatcheries, and natural habitat~ (wild populations of fish). The disease has been recognized as an important infection among hatchery reared salmonid fishes on the West Coast of the United States, and in aquarium fishes such as the neon tetra, the Siamese fighting fish, and in salt water fish held in zoological displays.

  13. Diet and lung cancer risk from a 14-year population-based prospective study in Japan: with special reference to fish consumption.

    PubMed

    Takezaki, Toshiro; Inoue, Manami; Kataoka, Hiroki; Ikeda, Syuhei; Yoshida, Miyako; Ohashi, Yoko; Tajima, Kazuo; Tominaga, Suketami

    2003-01-01

    N-3 polyunsaturated fatty acids in fish oil exhibit a variety of health benefits, and there is evidence that they can inhibit the development of human lung mucoepidermoid and other carcinomas. To examine the hypothesis that fish consumption reduces the risk of lung cancer, we conducted a population-based prospective study, following 5,885 residents for 14 yr. Person-years were used to calculate the relative risk (RR) by the Cox proportional hazards model, with adjustment for potential confounding factors. A total of 51 incident lung cancer cases were observed, and we found linearly decreasing RRs for lung cancer with increased frequency of consumption of fish and shellfish (RRs = 1.00, 0.99, and 0.32, P for trend = 0.003) but not with intake of dried/salted fish. Decreased RRs were apparent with both broiling and boiling cooking methods, but reduction with raw and deep-fried fish consumption was not statistically significant. We conclude that frequent fresh fish consumption, irrespective of the cooking method, may reduce the risk of lung cancer. PMID:12881009

  14. Immigration Rates during Population Density Reduction in a Coral Reef Fish

    PubMed Central

    Turgeon, Katrine; Kramer, Donald L.

    2016-01-01

    Although the importance of density-dependent dispersal has been recognized in theory, few empirical studies have examined how immigration changes over a wide range of densities. In a replicated experiment using a novel approach allowing within-site comparison, we examined changes in immigration rate following the gradual removal of territorial damselfish from a limited area within a much larger patch of continuous habitat. In all sites, immigration occurred at intermediate densities but did not occur before the start of removals and only rarely as density approached zero. In the combined data and in 5 of 7 sites, the number of immigrants was a hump-shaped function of density. This is the first experimental evidence for hump-shaped, density-dependent immigration. This pattern may be more widespread than previously recognized because studies over more limited density ranges have identified positive density dependence at low densities and negative density dependence at high densities. Positive density dependence at low density can arise from limits to the number of potential immigrants and from behavioral preferences for settling near conspecifics. Negative density dependence at high density can arise from competition for resources, especially high quality territories. The potential for non-linear effects of local density on immigration needs to be recognized for robust predictions of conservation reserve function, harvest impacts, pest control, and the dynamics of fragmented populations. PMID:27271081

  15. An Evaluation of Parametric and Nonparametric Models of Fish Population Response.

    SciTech Connect

    Haas, Timothy C.; Peterson, James T.; Lee, Danny C.

    1999-11-01

    Predicting the distribution or status of animal populations at large scales often requires the use of broad-scale information describing landforms, climate, vegetation, etc. These data, however, often consist of mixtures of continuous and categorical covariates and nonmultiplicative interactions among covariates, complicating statistical analyses. Using data from the interior Columbia River Basin, USA, we compared four methods for predicting the distribution of seven salmonid taxa using landscape information. Subwatersheds (mean size, 7800 ha) were characterized using a set of 12 covariates describing physiography, vegetation, and current land-use. The techniques included generalized logit modeling, classification trees, a nearest neighbor technique, and a modular neural network. We evaluated model performance using out-of-sample prediction accuracy via leave-one-out cross-validation and introduce a computer-intensive Monte Carlo hypothesis testing approach for examining the statistical significance of landscape covariates with the non-parametric methods. We found the modular neural network and the nearest-neighbor techniques to be the most accurate, but were difficult to summarize in ways that provided ecological insight. The modular neural network also required the most extensive computer resources for model fitting and hypothesis testing. The generalized logit models were readily interpretable, but were the least accurate, possibly due to nonlinear relationships and nonmultiplicative interactions among covariates. Substantial overlap among the statistically significant (P<0.05) covariates for each method suggested that each is capable of detecting similar relationships between responses and covariates. Consequently, we believe that employing one or more methods may provide greater biological insight without sacrificing prediction accuracy.

  16. One Fish, Two Fish, Redfish, You Fish!

    ERIC Educational Resources Information Center

    White, Katherine; Timmons, Maryellen; Medders, Paul

    2011-01-01

    The recreational fishing activity presented in this article provides a hands-on, problem-based experience for students; it unites biology, math, economics, environmental policy, and population dynamics concepts. In addition, the activity allows students to shape environmental policy in a realistic setting and evaluate their peers' work. By…

  17. Evaluation of population-level ecological risks of dioxin-like polychlorinated biphenyl exposure to fish-eating birds in Tokyo Bay and its vicinity.

    PubMed

    Naito, Wataru; Murata, Mariko

    2007-01-01

    Population-level assessments of the ecological risks of dioxin-like polychlorinated biphenyl (PCB) exposure to fish-eating birds in Tokyo Bay and its vicinity were performed to judge the need for risk management measures to protect aquatic wildlife from dioxin-like PCB contamination. Egg mortality risk and changes in the population growth rate (lambda) in relation to the contamination levels of dioxin-like PCBs in eggs of gray heron (Ardea cinerea), great cormorant (Phalacrocorax carbo), osprey (Pandion halieaetus), and kingfisher (Alcedo atthis) were determined by integrating the results of exposure analysis, effect analysis, and a life-history model for each species. The egg mortality risks for the gray heron, great cormorant, osprey, and kingfisher populations were calculated to be 5.8, 6.8, 12, and less than 1%, respectively. The estimated lambda for those populations were calculated to be 1.061, 1.405, 1.024, and 1.131, respectively. The percentage changes in lambda for those populations were estimated to be 1.2, 2.0, 1.6, and less than 1%, respectively. Our results implied that the levels of dioxin-like PCBs observed in the Tokyo Bay area alone would not have significant population-level effects on the fish-eating bird populations. It is concluded that along with the trend toward decreasing dioxin and dioxin-like PCB levels in Tokyo Bay, no urgent need exists for risk-reduction measures to protect fish-eating bird populations against dioxin-like PCBs. PMID:17283596

  18. Trajectories and magnitude of change in coral reef fish populations in Philippine marine reserves: a meta-analysis

    NASA Astrophysics Data System (ADS)

    Maliao, R. J.; White, A. T.; Maypa, A. P.; Turingan, R. G.

    2009-12-01

    Marine reserves are widely implemented worldwide to meet both conservation and fisheries management goals. This study examines the efficacy of Philippine marine reserves using meta-analysis by comparing variations in fish density (1) between reserves and adjacent fished reefs (spatial comparison), (2) within reserves before establishment relative to years following the establishment (temporal comparison), and (3) among reserves classified based on size, age, and enforcement capacity. A grand (total) mean of nineteen 22.3 ha coral reef reserves, protected for a mean duration of 8.2 years, were included in the meta-analyses. The overall density of fishes was higher in the reserves compared with the fished reefs and this difference was largely accounted for by exploited fishes. However, the overall density of fishes within the same reserves remained similar from the period before its establishment to several years following its establishment. Only the density of nonexploited fishes increased significantly during years subsequent to the establishment of the reserves. Neither age nor size of reserves correlated with pattern of change in fish density following the establishment of the reserves; however, fish density was consistently higher in larger and older reserves relative to smaller and younger reserves in the spatial comparison. Furthermore, well-enforced reserves had higher density of exploited fishes relative to less-enforced reserves in both spatial and temporal comparisons. In general, the magnitude and trajectory of change in fish density following the establishment of Philippine marine reserves are influenced by (1) functional groups of fishes under consideration, (2) size and age of the reserve, and (3) level of enforcement of the regulatory mechanisms necessary to sustain a marine reserve.

  19. Assessing prey fish populations in Lake Michigan: Comparison of simultaneous acoustic-midwater trawling with bottom trawling

    USGS Publications Warehouse

    Fabrizio, Mary C.; Adams, Jean V.; Curtis, Gary L.

    1997-01-01

    The Lake Michigan fish community has been monitored since the 1960s with bottom trawls, and since the late 1980s with acoustics and midwater trawls. These sampling tools are limited to different habitats: bottom trawls sample fish near bottom in areas with smooth substrates, and acoustic methods sample fish throughout the water column above all substrate types. We compared estimates of fish densities and species richness from daytime bottom trawling with those estimated from night-time acoustic and midwater trawling at a range of depths in northeastern Lake Michigan in summer 1995. We examined estimates of total fish density as well as densities of alewife Alosa pseudoharengus (Wilson), bloater Coregonus hoyi (Gill), and rainbow smelt Osmerus mordax (Mitchell) because these three species are the dominant forage of large piscivores in Lake Michigan. In shallow water (18 m), we detected more species but fewer fish (in fish/ha and kg/ha) with bottom trawls than with acoustic-midwater trawling. Large aggregations of rainbow smelt were detected by acoustic-midwater trawling at 18 m and contributed to the differences in total fish density estimates between gears at this depth. Numerical and biomass densitites of bloaters from all depths were significantly higher when based on bottom trawl samples than on acoustic-midwater trawling, and this probably contributed to the observed significant difference between methods for total fish densities (kg/ha) at 55 m. Significantly fewer alewives per ha were estimated from bottom trawling than from acoustics-midwater trawling at 55 m, and in deeper waters, no alewives were taken by bottom trawling. The differences detected between gears resulted from alewife, bloater, and rainbow smelt vertical distributions, which varied with lake depth and time of day. Because Lake Michigan fishes are both demersal and pelagic, a single sampling method cannot be used to completely describe characteristics of the fish community.

  20. Invasive Cyprinid Fish in Europe Originate from the Single Introduction of an Admixed Source Population Followed by a Complex Pattern of Spread

    PubMed Central

    Simon, Andrea; Britton, Robert; Gozlan, Rodolphe; van Oosterhout, Cock; Volckaert, Filip A. M.; Hänfling, Bernd

    2011-01-01

    The Asian cyprinid fish, the topmouth gudgeon (Pseudorasbora parva), was introduced into Europe in the 1960s. A highly invasive freshwater fish, it is currently found in at least 32 countries outside its native range. Here we analyse a 700 base pair fragment of the mitochondrial cytochrome b gene to examine different models of colonisation and spread within the invasive range, and to investigate the factors that may have contributed to their invasion success. Haplotype and nucleotide diversity of the introduced populations from continental Europe was higher than that of the native populations, although two recently introduced populations from the British Isles showed low levels of variability. Based on coalescent theory, all introduced and some native populations showed a relative excess of nucleotide diversity compared to haplotype diversity. This suggests that these populations are not in mutation-drift equilibrium, but rather that the relative inflated level of nucleotide diversity is consistent with recent admixture. This study elucidates the colonisation patterns of P. parva in Europe and provides an evolutionary framework of their invasion. It supports the hypothesis that their European colonisation was initiated by their introduction to a single location or small geographic area with subsequent complex pattern of spread including both long distance and stepping-stone dispersal. Furthermore, it was preceded by, or associated with, the admixture of genetically diverse source populations that may have augmented its invasive-potential. PMID:21674031

  1. Beyond dichotomous life histories in partially migrating populations: cessation of anadromy in a long-lived fish.

    PubMed

    Bond, Morgan H; Miller, Jessica A; Quinn, Thomas P

    2015-07-01

    Across animal taxa, migration allows individuals to exploit habitats and resources that predictably vary seasonally in suitability. Theory predicts that the "decision" to migrate or not is shaped by the relative fitness costs and benefits of exhibiting a given life history. Adoption of a migratory strategy is widely thought to reflect a dichotomous outcome; individuals are either resident or migratory, and continue to exhibit this life history until death. In fishes, anadromy and freshwater residency represents a well-studied life history dichotomy. Resident individuals may adopt a migratory life history later in life, but migratory individuals are not known to abandon this pattern. Here, we investigated the fitness benefits, as measured by body size, of residency and anadromy in a salmonid fish, Dolly Varden, Salvelinus malma, in Alaska, and reveal a novel life history: cessation of migration by older, larger individuals. Otolith microchemical analysis of Dolly Varden showed that while most fish migrated to sea at least once in their lives, lifelong resident fish exist in streams with close proximity to the ocean. Moreover, the probability of seaward migration in any year of life decreased annually after an individual's fourth year, and no fish migrated after their eighth year, while the oldest fish were captured in their 11th year. Migration conferred a size advantage in young fish, but the size benefits of marine foraging declined in older fish, at which time fish increasingly "retired from anadromy." Additionally, measurement of both natal otolith chemistry and the gonadosomatic index indicated a continued contribution to lifetime fitness, rather than senescence, in retired individuals. We suggest that the novel life history of reversion to residency by older fish is viable because foraging opportunities are subsidized by the predictable annual supply of energy-rich eggs and carcasses of spawning Pacific salmon. PMID:26378312

  2. Does mating behaviour affect connectivity in marine fishes? Comparative population genetics of two protogynous groupers (Family Serranidae).

    PubMed

    Portnoy, D S; Hollenbeck, C M; Renshaw, M A; Cummings, N J; Gold, J R

    2013-01-01

    Pelagic larval duration (PLD) has been hypothesized to be the primary predictor of connectivity in marine fishes; however, few studies have examined the effects that adult reproductive behaviour may have on realized dispersal. We assessed gene flow (connectivity) by documenting variation in microsatellites and mitochondrial DNA sequences in two protogynous species of groupers, the aggregate spawning red hind, Epinephelus guttatus, and the single-male, harem-spawning coney, Cephalopholis fulva, to ask whether reproductive strategy affects connectivity. Samples of both species were obtained from waters off three islands (Puerto Rico, St. Thomas and St. Croix) in the Caribbean Sea. Despite the notion that aggregate spawning of red hind may facilitate larval retention, stronger signals of population structure were detected in the harem-spawning coney. Heterogeneity and/or inferred barriers, based on microsatellites, involved St. Croix (red hind and coney) and the west coast of Puerto Rico (coney). Heterogeneity and/or inferred barriers, based on mitochondrial DNA, involved St. Croix (coney only). Genetic divergence in both species was stronger for microsatellites than for mitochondrial DNA, suggesting sex-biased dispersal in both species. Long-term migration rates, based on microsatellites, indicated asymmetric gene flow for both species in the same direction as mean surface currents in the region. Red hind had higher levels of variation in microsatellites and lower levels of variation in mitochondrial DNA. Long-term effective size and effective number of breeders were greater for red hind; estimates of θ(f) , a proxy for long-term effective female size, were the same in both species. Patterns of gene flow in both species appear to stem in part from shared aspects of larval and adult biology, local bathymetry and surface current patterns. Differences in connectivity and levels of genetic variation between the species, however, likely stem from differences in behaviour

  3. Population Connectivity and Phylogeography of a Coastal Fish, Atractoscion aequidens (Sciaenidae), across the Benguela Current Region: Evidence of an Ancient Vicariant Event

    PubMed Central

    Henriques, Romina; Potts, Warren M.; Santos, Carmen V.; Sauer, Warwick H. H.; Shaw, Paul W.

    2014-01-01

    Contemporary patterns of genetic diversity and population connectivity within species can be influenced by both historical and contemporary barriers to gene flow. In the marine environment, present day oceanographic features such as currents, fronts and upwelling systems can influence dispersal of eggs/larvae and/juveniles/adults, shaping population substructuring. The Benguela Current system in the southeastern Atlantic is one of the oldest upwelling systems in the world, and provides a unique opportunity to investigate the relative influence of contemporary and historical mechanisms shaping the evolutionary history of warm-temperate fish species. Using the genetic variation in the mitochondrial DNA Control Region and eight nuclear microsatellite DNA loci, we identified the presence of two highly divergent populations in a vagile and warm-temperate fish species, Atractoscion aequidens, across the Benguela region. The geographical distributions of the two populations, on either side of the perennial upwelling cell, suggest a strong correlation between the oceanographic features of the system and the breakdown of gene flow within this species. Genetic divergence (mtDNA φST = 0.902, microsatellite FST = 0.055: probability of genetic homogeneity for either marker = p<0.001), absence of migrants (less than 1% per generation) between populations and coalescent estimates of time since most recent common ancestor suggest that the establishment of the main oceanographic features of the system (2 million years ago), particularly the strengthening and position of the perennial upwelling cell, is the most likely mechanism behind the observed isolation. Concordance between mitochondrial and nuclear genetic markers indicates that isolation and divergence of the northern and southern Benguela populations of A. aequidens occurred deep in the past and has continued to the present day. These findings suggest that the Benguela Current system may constitute an ancient

  4. SE Asian freshwater fish population and networks: the impacts of climatic and environmental change on a vital resource

    NASA Astrophysics Data System (ADS)

    Santos, Rita; Parsons, Daniel; Cowx, Ian

    2016-04-01

    The Mekong River is the 10th largest freshwater river in the world, with the second highest biodiversity wealth, behind the much larger Amazon basin. The fisheries activity in the Lower Mekong countries counts for 2.7 million tons of fish per year, with an estimated value worth up to US 7 billion. For the 60 million people living in the basin, fish represent their primary source of economic income and protein intake, with an average per capita consumption estimated at 45.4 Kg. The proposed hydropower development in the basin is threatening its sustainability and resilience. Such developments affect fish migration patterns, hydrograph flood duration and magnitudes and sediment flux. Climate change is also likely to impact the basin, exacerbating the issues created by development. As a monsoonal system, the Mekong River's pronounced annual flood pulse cycle is important in creating variable habitat for fish productivity. Moreover, the annual flood also triggers fish migration and provides vital nutrients carried by the sediment flux. This paper examines the interactions between both dam development and climate change scenarios on fish habitat and habitat connectivity, with the aim of predicting how these will affect fish species composition and fisheries catch. The project will also employ Environmental DNA (eDNA) to quantify and understand the species composition of this complex and large freshwater system. By applying molecular analysis, it is possible to trace species abundance and migration patterns of fish and evaluate the ecological networks establish between an inland system. The aim of this work is to estimate, using process-informed models, the impacts of the proposed dam development and climate change scenarios on the hydrological and hydraulic conditions of habitat availability for fish. Furthermore, it will evaluate the connectivity along the Mekong and its tributaries, and the importance of maintaining these migration pathways, used by a great diversity

  5. An investigation into the prevalence of Renibacterium salmoninarum in farmed rainbow trout, Oncorhynchus mykiss (Walbaum), and wild fish populations in selected river catchments in England and Wales between 1998 and 2000.

    PubMed

    Chambers, E; Gardiner, R; Peeler, E J

    2008-02-01

    A cross-sectional survey of Renibacterium salmoninarum infection in farmed rainbow trout (RBT) and wild fish populations was carried out in 10 farms and six river catchments, respectively, in England and Wales. The majority of the wild fish were sampled in 1998 and the farmed fish in 2000. Grayling, Thymallus thymallus, and brown trout, Salmo trutta, were the main wild species sampled. Two fish, one grayling and one salmon, Salmo salar, were R. salmoninarum culture-positive, compared with 40 confirmed polymerase chain reaction-positive wild fish. The highest prevalence of R. salmoninarum infection was found in grayling in rivers with RBT farms with a history of R. salmoninarum infection. One hundred and fifty fish were sampled from each RBT farm, but none of the fish was found to be R. salmoninarum-positive. Evidence was found, for the first time, for the presence of R. salmoninarum in an eel, Anguilla anguilla. PMID:18234016

  6. Changes in Habitat and Populations of Steelhead Trout, Coho Salmon, and Chinook Salmon in Fish Creek, Oregon; Habitat Improvement, 1983-1987 Final Report.

    SciTech Connect

    Everest, Fred H.; Hohler, David B.; Cain, Thomas C.

    1988-03-01

    Construction and evaluation of salmonid habitat improvements on Fish Creek, a tributary of the upper Clackamas River, began in 1982 as a cooperative venture between the Estacada Ranger District, Mt. Hood National Forest, and the Anadromous Fish Habitat Research Unit of the Pacific Northwest Research Station (PNW), USDA Forest Service. The project was initially conceived as a 5-year effort (1982-1987) to be financed with Forest Service funds. The habitat improvement program and the evaluation of improvements were both expanded in mid-1983 when the Bonneville Power Administration (BPA) entered into an agreement with the Mt. Hood National Forest to cooperatively fund work on Fish Creek. Habitat improvement work in the basin is guided by the Fish Creek Habitat Rehabilitation-Enhancement Framework developed cooperatively by the Estacada Ranger District, the Oregon Department of Fish and Wildlife, and the Pacific Northwest Research Station. The framework examines potential factors limiting production of salmonids in the basin, and the appropriate habitat improvement measures needed to address the limiting factors. Habitat improvement work in the basin has been designed to: (1) improve quantity, quality, and distribution of spawning habitat for coho and spring chinook salmon and steelhead trout, (2) increase low flow rearing habitat for steelhead trout and coho salmon, (3) improve overwintering habitat for coho salmon and steelhead trout, (4) rehabilitate riparian vegetation to improve stream shading to benefit all species, and (5) evaluate improvement projects from a drainage wide perspective. The objectives of the evaluation include: (1) Drainage-wide evaluation and quantification of changes in salmonid spawning and rearing habitat resulting from a variety of habitat improvements. (2) Evaluation and quantification of changes in fish populations and biomass resulting from habitat improvements. (3) Benefit-cost analysis of habitat improvements.

  7. Predicting the effects of copper on local population decline of 2 marine organisms, cobia fish and whiteleg shrimp, based on avoidance response.

    PubMed

    Araújo, Cristiano V M; Cedeño-Macías, Luís A; Vera-Vera, Victoria C; Salvatierra, David; Rodríguez, Elizabeth N V; Zambrano, Ufredo; Kuri, Samir

    2016-02-01

    The present study focuses on avoidance response to predict population decline of the marine fish Rachycentron canadum (cobia) and larvae of the estuarine shrimp Litopenaeus vannamei (whiteleg shrimp). Avoidance of approximately 60% was recorded for the cobia fry exposed to 1.0 mg Cu/L, 1.60 mg Cu/L, and 1.80 mg Cu/L. For the shrimp larvae, avoidance was approximately 80% for all Cu concentrations. The population decline of cobia fry was conditioned by avoidance in lower concentrations. However, in higher concentrations mortality begins to play an important role. The displacement toward uncontaminated habitats might determine shrimp population decline. A Cu-contaminated environment can determine the habitat selection of both species and, therefore, their local population decline. PMID:26250074

  8. Lack of genotoxicity in Astyanax bimaculatus and Oreochromis niloticus of 17α-methyltestosterone used in fish hatcheries to produce male monosex populations.

    PubMed

    Rivero-Wendt, C L G; Miranda-Vilela, A L; Ferreira, M F N; Amorim, F S; da Silva, V A G; Louvandini, H; Grisolia, C K

    2013-01-01

    17α-Methyltestosterone (MT) is widely used in fish hatcheries of many countries to produce male monosex populations. Its genotoxic risk to fish species is not well known and studies in other in vivo models are still inconclusive. MT was tested for genotoxicity in the fish species Oreochromis niloticus (tilapia), a target species, and Astyanax bimaculatus (lambari), a native non-target species. Genotoxicity was evaluated by the micronucleus test (MN), nuclear abnormalities (NA), and comet assay using peripheral erythrocytes of both species after a 96-h exposure to MT at concentrations of 0.01, 0.1, and 1.0 mg/L in the water. At the lowest exposure level of 0.01 mg/L, MT induced MN in both species and NA only in O. niloticus. These effects were not observed in the comet assay. Chromatographic analysis of water samples collected from aquariums at the beginning and end of each experiment showed that MT was consumed during the 96-h exposure. At the highest level of exposure (1.0 mg/L), 81.69% of the hormone was consumed during the exposure period. The chromatogram showed that at the lowest concentration level of 0.01 mg/L, 99.56% MT was consumed by the end of the exposure period. Thus, exposure to MT did not cause genotoxicity in either fish species. PMID:24301763

  9. The Application of Traits-Based Assessment Approaches to Estimate the Effects of Hydroelectric Turbine Passage on Fish Populations

    SciTech Connect

    Cada, Glenn F; Schweizer, Peter E

    2012-04-01

    One of the most important environmental issues facing the hydropower industry is the adverse impact of hydroelectric projects on downstream fish passage. Fish that migrate long distances as part of their life cycle include not only important diadromous species (such as salmon, shads, and eels) but also strictly freshwater species. The hydropower reservoirs that downstream-moving fish encounter differ greatly from free-flowing rivers. Many of the environmental changes that occur in a reservoir (altered water temperature and transparency, decreased flow velocities, increased predation) can reduce survival. Upon reaching the dam, downstream-migrating fish may suffer increased mortality as they pass through the turbines, spillways and other bypasses, or turbulent tailraces. Downstream from the dam, insufficient environmental flow releases may slow downstream fish passage rates or decrease survival. There is a need to refine our understanding of the relative importance of causative factors that contribute to turbine passage mortality (e.g., strike, pressure changes, turbulence) so that turbine design efforts can focus on mitigating the most damaging components. Further, present knowledge of the effectiveness of turbine improvements is based on studies of only a few species (mainly salmon and American shad). These data may not be representative of turbine passage effects for the hundreds of other fish species that are susceptible to downstream passage at hydroelectric projects. For example, there are over 900 species of fish in the United States. In Brazil there are an estimated 3,000 freshwater fish species, of which 30% are believed to be migratory (Viana et al. 2011). Worldwide, there are some 14,000 freshwater fish species (Magurran 2009), of which significant numbers are susceptible to hydropower impacts. By comparison, in a compilation of fish entrainment and turbine survival studies from over 100 hydroelectric projects in the United States, Winchell et al. (2000

  10. Multi-Scale Modeling of Riverine Ecosystems and Responses of Fish Populations in the Context of Global Climate Change and Predictive Uncertainty

    NASA Astrophysics Data System (ADS)

    Wildhaber, M. L.; Wikle, C. K.; Anderson, C. J.; Franz, K. J.; Moran, E. H.

    2010-12-01

    Climate change operates over a broad range of spatial and temporal scales. Understanding its effects on ecosystems requires multi-scale models. For understanding effects on fish populations of riverine ecosystems, climate predicted by course-resolution Global Climate Models must be downscaled to Regional Climate Models to watersheds to river hydrology to population response. An additional challenge is quantifying sources of uncertainty given the highly nonlinear nature of interactions between climate variables and community level processes. We present a modeling approach for understanding and accomodating uncertainty by applying multi-scale climate models and hierarchical Bayesian modeling frameworks to Midwest fish population dynamics and by linking models for system components together by formal rules of probability. The proposed hierarchical modeling approach will account for sources of uncertainty in forecasts of community or population response. The goal is to evaluate the potential distributional changes in an ecological system, given distributional changes implied by a series of linked climate and system models under various emissions/use scenarios. This understanding will aid evaluation of management options for coping with global change.

  11. The Effect on Selenium Concentrations of a Randomized Intervention with Fish and Mussels in a Population with Relatively Low Habitual Dietary Selenium Intake

    PubMed Central

    Outzen, Malene; Tjønneland, Anne; Larsen, Erik H.; Andersen, Klaus K.; Christensen, Jane; Overvad, Kim; Olsen, Anja

    2015-01-01

    Selenium status of the Danish population is below that assumed optimal for the suggested protective effects against chronic diseases, including certain cancers. Fish and shellfish are important dietary sources of selenium in Denmark. We investigated the effect of increased fish and mussel intake on selenium blood concentrations in a population with relatively low habitual dietary selenium intake. We randomly assigned 102 healthy men and women (all non-smokers) aged 48–76 years to an intervention group (n = 51) or a control group (n = 51). Intervention participants received 1000 g fish and mussels/week for 26 weeks (~50 μg selenium/day). Controls received no intervention. Non-fasting blood samples were taken and whole blood selenium was determined using inductively coupled plasma-mass spectrometry (ICP-MS), and plasma selenoprotein P (SelP) was determined by high performance liquid chromatography coupled to ICP-MS. All available observations were included in linear multiple regression analysis to evaluate the effect of the intervention. The difference in mean change for intervention compared with control persons was 14.9 ng/mL (95% CI: 10.2, 19.7) for whole blood selenium, and 7.0 ng/mL (95% CI: 3.1, 10.9) for plasma SelP (Weeks 0–26). Selenium concentrations were significantly increased after 26 weeks of intervention, albeit to a lower degree than expected. PMID:25599275

  12. Relationships between bald eagle productivity and dynamics of fish populations and fisheries in the Wisconsin waters of Lake Superior, 1983-1999

    USGS Publications Warehouse

    Hoff, Michael H.; Meyer, Michael W.; Van Stappen, Julie; Fratt, Thomas W.

    2004-01-01

    Bald eagle (Haliaeetus leucocephalus) abundance declined in the 1950s and 1960s along the Wisconsin waters of Lake Superior, and were nearly absent along Wisconsin's Lake Superior shoreline. The population began to increase again between 1980 and 1983, and since then bald eagles nesting on islands along Wisconsin's Lake Superior shoreline (i.e., Apostle Islands) reproduced at a lower rate than have those nesting along the mainland shoreline of the lake and inland. Recent research indicated that bioaccumulation of toxic chemicals in the aquatic food chain no longer limits bald eagle reproduction there, and that productivity at island nests was lower than at mainland nests and inland nests as the result of low food availability. Management agencies have sought models that accurately predict productivity and explain ecological relationships, but no satisfactory models had previously been developed. Modeling was conducted here to determine which factors best explained productivity variability. The Ricker stock-recruitment model derived from only the bivariate breeding pair and productivity data explained only 1% of the variability in productivity data. The functional relationship that explained the greatest amount of productivity variation (83%) included the number of breeding pairs, burbot (Lota lota) biomass, longnose sucker (Catostomus catostomus) biomass, and commercial harvest of nontarget fishes. Model results were interpreted to mean that productivity was positively affected by populations of burbot and longnose sucker, which are important prey items, and by commercial fishermen feeding nontarget fish to bald eagles. Harvest of nontarget fishes by tribal fishermen and burbot and longnose sucker populations have not tended to change during the entire study period, although the burbot population has declined since 1991. Therefore, bald eagle productivity is not predicted to increase unless burbot, longnose sucker, or other preferred prey of bald eagles increases

  13. Population parameters and dynamic pool models of commercial fishes in the Beibu Gulf, northern South China Sea

    NASA Astrophysics Data System (ADS)

    Wang, Xuehui; Qiu, Yongsong; Du, Feiyan; Lin, Zhaojin; Sun, Dianrong; Huang, Shuolin

    2012-01-01

    Length-frequency data of eight commercial fish species in the Beibu Gulf (Golf of Tonkin), northern South China Sea, were collected during 2006-2007. Length-weight relationships and growth and mortality parameters were analyzed using FiSAT II software. Five species had isometric growth, two species had negative allometric growth, and one species had positive allometric growth. Overall, the exploitation rates of the eight species were lower in 2006-2007 than in 1997-1999: for four species ( Saurida tumbil, Saurida undosquamis, Argyrosomus macrocephalus, and Nemipterus virgatus) it was lower in 2006-2007 than in 1997-1999, for two species ( Parargyrops edita and Trichiurus haumela) it remained the same, and for the other two species ( Trachurus japonicus and Decapterus maruadsi) it was higher in 2006-2007 than in 1997-1999. The exploitation rates might have declined because of the decline in fishing intensity caused by high crude oil prices. The optimum exploitation rate, estimated using Beverton-Holt dynamic pool models, indicated that although fishes in the Beibu Gulf could sustain high exploitation rates, the under-size fishes at first capture resulted in low yields. To increase the yield per recruitment, it is more effective to increase the size at first capture than to control fishing effort.

  14. How populations differentiate despite gene flow: sexual and natural selection drive phenotypic divergence within a land fish, the Pacific leaping blenny

    PubMed Central

    2014-01-01

    Background Divergence between populations in reproductively important features is often vital for speciation. Many studies attempt to identify the cause of population differentiation in phenotype through the study of a specific selection pressure. Holistic studies that consider the interaction of several contrasting forms of selection are more rare. Most studies also fail to consider the history of connectivity among populations and the potential for genetic drift or gene flow to facilitate or limit phenotypic divergence. We examined the interacting effects of natural selection, sexual selection and the history of connectivity on phenotypic differentiation among five populations of the Pacific leaping blenny (Alticus arnoldorum), a land fish endemic to the island of Guam. Results We found key differences among populations in two male ornaments—the size of a prominent head crest and conspicuousness of a coloured dorsal fin—that reflected a trade-off between the intensity of sexual selection (male biased sex ratios) and natural selection (exposure to predators). This differentiation in ornamentation has occurred despite evidence suggesting extensive gene flow among populations, which implies that the change in ornament expression has been recent (and potentially plastic). Conclusions Our study provides an early snapshot of divergence in reproductively important features that, regardless of whether it reflects genetic or plastic changes in phenotype, could ultimately form a reproductive barrier among populations. PMID:24884492

  15. Life-history diversity and its importance to population stability and persistence of a migratory fish: steelhead in two large North American watersheds.

    PubMed

    Moore, Jonathan W; Yeakel, Justin D; Peard, Dean; Lough, Jeff; Beere, Mark

    2014-09-01

    Life-history strategies can buffer individuals and populations from environmental variability. For instance, it is possible that asynchronous dynamics among different life histories can stabilize populations through portfolio effects. Here, we examine life-history diversity and its importance to stability for an iconic migratory fish species. In particular, we examined steelhead (Oncorhynchus mykiss), an anadromous and iteroparous salmonid, in two large, relatively pristine, watersheds, the Skeena and Nass, in north-western British Columbia, Canada. We synthesized life-history information derived from scales collected from adult steelhead (N = 7227) in these watersheds across a decade. These migratory fishes expressed 36 different manifestations of the anadromous life-history strategy, with 16 different combinations of freshwater and marine ages, 7·6% of fish performing multiple spawning migrations, and up to a maximum of four spawning migrations per lifetime. Furthermore, in the Nass watershed, various life histories were differently prevalent through time - three different life histories were the most prevalent in a given year, and no life history ever represented more than 45% of the population. These asynchronous dynamics among life histories decreased the variability of numerical abundance and biomass of the aggregated population so that it was > 20% more stable than the stability of the weighted average of specific life histories: evidence of a substantial portfolio effect. Year of ocean entry was a key driver of dynamics; the median correlation coefficient of abundance of life histories that entered the ocean the same year was 2·5 times higher than the median pairwise coefficient of life histories that entered the ocean at different times. Simulations illustrated how different elements of life-history diversity contribute to stability and persistence of populations. This study provides evidence that life-history diversity can dampen fluctuations in

  16. Unraveling the Limits of Mitochondrial Control Region to Estimate the Fine Scale Population Genetic Differentiation in Anadromous Fish Tenualosa ilisha

    PubMed Central

    Verma, Rashmi; Singh, Mahender; Kumar, Sudhir

    2016-01-01

    The mitochondrial control region has been the first choice for examining the population structure but hypervariability and homoplasy have reduced its suitability. We analysed eight populations using control region for examining the population structure of Hilsa. Although the control region analysis revealed broad structuring between the Arabian Sea and Bay of Bengal (FST  0.0441, p < 0.001) it was unable to detect structure among riverine populations. These results suggest that the markers used must be able to distinguish populations and control region has led to an underestimation of genetic differentiation among populations of Hilsa. PMID:27313951

  17. Unraveling the Limits of Mitochondrial Control Region to Estimate the Fine Scale Population Genetic Differentiation in Anadromous Fish Tenualosa ilisha.

    PubMed

    Verma, Rashmi; Singh, Mahender; Kumar, Sudhir

    2016-01-01

    The mitochondrial control region has been the first choice for examining the population structure but hypervariability and homoplasy have reduced its suitability. We analysed eight populations using control region for examining the population structure of Hilsa. Although the control region analysis revealed broad structuring between the Arabian Sea and Bay of Bengal (F ST  0.0441, p < 0.001) it was unable to detect structure among riverine populations. These results suggest that the markers used must be able to distinguish populations and control region has led to an underestimation of genetic differentiation among populations of Hilsa. PMID:27313951

  18. A Multiple Watershed Approach to Assessing the Effects of Habitat Restoration Actions on Anadromous and Resident Fish Populations, Technical Report 2003-2004.

    SciTech Connect

    Marmorek, David

    2004-03-01

    Habitat protection and restoration is a cornerstone of current strategies to restore ecosystems, recover endangered fish species, and rebuild fish stocks within the Columbia River Basin. Strategies featuring habitat restoration include the 2000 Biological Opinion on operation of the Federal Columbia River Power System (FCRPS BiOp) developed by the National Marine Fisheries Service (NMFS), the 2000 Biological Opinion on Bull Trout developed by the US Fish and Wildlife Service (USFWS), and Sub-Basin Plans developed under the Fish and Wildlife Program of the Northwest Power and Conservation Council (NWPCC). There is however little quantitative information about the effectiveness of different habitat restoration techniques. Such information is crucial for helping scientists and program managers allocate limited funds towards the greatest benefits for fish populations. Therefore, it is critical to systematically test the hypotheses underlying habitat restoration actions for both anadromous and resident fish populations. This pilot project was developed through a proposal to the Innovative Projects fund of the NWPCC (ESSA 2002). It was funded by the Bonneville Power Administration (BPA) following reviews by the Independent Scientific Review Panel (ISRP 2002), the Columbia Basin Fish and Wildlife Authority (CBFWA 2002), the NWPCC and BPA. The study was designed to respond directly to the above described needs for information on the effectiveness of habitat restoration actions, including legal measures specified in the 2000 FCRPS BiOp (RPA 183, pg. 9-133, NMFS 2000). Due to the urgency of addressing these measures, the timeline of the project was accelerated from a duration of 18 months to 14 months. The purpose of this pilot project was to explore methods for evaluating past habitat restoration actions and their effects on fish populations. By doing so, the project will provide a foundation of retrospective analyses, on which to build prospective, multi-watershed designs

  19. Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot

    NASA Astrophysics Data System (ADS)

    van der Meer, M. H.; Berumen, M. L.; Hobbs, J.-P. A.; van Herwerden, L.

    2015-06-01

    Marine protected areas (MPAs) aim to mitigate anthropogenic impacts by conserving biodiversity and preventing overfishing. The effectiveness of MPAs depends on population connectivity patterns between protected and non-protected areas. Remote islands are endemism hotspots for coral reef fishes and provide rare examples of coral reefs with limited fishing pressure. This study explored population genetic connectivity across a network of protected and non-protected areas for the endemic wrasse, Coris bulbifrons, which is listed as "vulnerable" by the IUCN due to its small, decreasing geographic range and declining abundance. Mitochondrial DNA (mtDNA) and microsatellite DNA (msatDNA) markers were used to estimate historic and contemporary gene flow to determine the level of population self-replenishment and to measure genetic and genotypic diversity among all four locations in the species range (south-west Pacific Ocean)—Middleton Reef (MR), Elizabeth Reef (ER), Lord Howe Island (LHI) and Norfolk Island (NI). MPAs exist at MR and LHI and are limited or non-existent at ER and NI, respectively. There was no obvious differentiation in mtDNA among locations, however, msatDNA revealed differentiation between the most peripheral (NI) and all remaining locations (MR, ER and LHI). Despite high mtDNA connectivity ( M = 259-1,144), msatDNA connectivity was limited ( M = 3-9) with high self-replenishment (68-93 %) at all locations. NI is the least connected and heavily reliant on self-replenishment, and the absence of MPAs at NI needs to be rectified to ensure the persistence of endemic species at this location. Other endemic fishes exhibit similar patterns of high self-replenishment across the four locations, indicating that a single spatial management approach consisting of a MPA network protecting part of each location could provide reasonable protection for these species. Thus, the existing network of MPAs at this endemic hotspot appears adequate at some locations, but not

  20. Fish population modeling approaches for assessing direct effects and recovery following mitigation of a pulp mill effluent in Jackfish Bay

    EPA Science Inventory

    We present an approach to link chemically-induced alterations in molecular and biochemical endpoints to adverse outcomes in whole organisms and populations. A predictive population model was developed to translate changes in fecundity measures of white sucker (Catostomus commers...

  1. EFFECTS OF A HIGHLY-CONTAMINATED URBAN HARBOR ON AN ESTUARINE FISH SPECIES: NEUTRAL MARKERS OF POPULATION GENETIC STRUCTURE

    EPA Science Inventory

    Fundulus heteroclitus populations indigenous to certain highly contaminated sites demonstrate an inherited tolerance to the toxic effects of local chemical contaminants. Our initial studies examining populations of F. heterclitus indigenous to a PCB-contaminated Superfund site at...

  2. Serial correlation and inter-annual variability in relation to the statistical power of monitoring schemes to detect trends in fish populations.

    PubMed

    Nagelkerke, Leopold A J; van Densen, Wim L T

    2007-02-01

    We studied the effects of inter-annual variability and serial correlation on the statistical power of monitoring schemes to detect trends in biomass of bream (Abramis brama) in Lake Veluwemeer (The Netherlands). In order to distinguish between 'true' system variability and sampling variability we simulated the development of the bream population, using estimates for population structure and growth, and compared the resulting inter-annual variabilities and serial correlations with those from field data. In all cases the inter-annual variability in the field data was larger than in simulated data (e.g. for total biomass of all assessed bream sigma = 0.45 in field data, and sigma = 0.03-0.14 in simulated data) indicating that sampling variability decreased statistical power for detecting trends. Moreover, sampling variability obscured the inter-annual dependency (and thus the serial correlation) of biomass, which was expected because in this long-lived population biomass changes are buffered by the many year classes present. We did find the expected serial correlation in our simulation results and concluded that good survey data of long-lived fish populations should show low sampling variability and considerable inter-annual serial correlation. Since serial correlation decreases the power for detecting trends, this means that even when sampling variability would be greatly reduced, the number of sampling years to detect a change of 15%.year(-1) in bream populations (corresponding to a halving or doubling in a six-year period) would in most cases be more than six. This would imply that the six-year reporting periods that are required by the Water Framework Directive of the European Union are too short for the existing fish monitoring schemes. PMID:17219244

  3. Population.

    ERIC Educational Resources Information Center

    King, Pat; Landahl, John

    This pamphlet has been prepared in response to a new problem, a rapidly increasing population, and a new need, population education. It is designed to help teachers provide their students with some basic population concepts with stress placed on the elements of decision making. In the first section of the pamphlet, some of the basic concepts of…

  4. Fish-allergic patients may be able to eat fish.

    PubMed

    Mourad, Ahmad A; Bahna, Sami L

    2015-03-01

    Reported fish allergy prevalence varies widely, with an estimated prevalence of 0.2% in the general population. Sensitization to fish can occur by ingestion, skin contact or inhalation. The manifestations can be IgE or non-IgE mediated. Several fish allergens have been identified, with parvalbumins being the major allergen in various species. Allergenicity varies among fish species and is affected by processing or preparation methods. Adverse reactions after eating fish are often claimed to be 'allergy' but could be a reaction to hidden food allergen, fish parasite, fish toxins or histamine in spoiled fish. Identifying such causes would allow free consumption of fish. Correct diagnosis of fish allergy, including the specific species, might provide the patient with safe alternatives. Patients have been generally advised for strict universal avoidance of fish. However, testing with various fish species or preparations might identify one or more forms that can be tolerated. PMID:25666551

  5. How systematic age underestimation can impede understanding of fish population dynamics: Lessons learned from a Lake Superior cisco stock

    USGS Publications Warehouse

    Yule, D.L.; Stockwell, J.D.; Black, J.A.; Cullis, K.I.; Cholwek, G.A.; Myers, J.T.

    2008-01-01

    Systematic underestimation of fish age can impede understanding of recruitment variability and adaptive strategies (like longevity) and can bias estimates of survivorship. We suspected that previous estimates of annual survival (S; range = 0.20-0.44) for Lake Superior ciscoes Coregonus artedi developed from scale ages were biased low. To test this hypothesis, we estimated the total instantaneous mortality rate of adult ciscoes from the Thunder Bay, Ontario, stock by use of cohort-based catch curves developed from commercial gill-net catches and otolith-aged fish. Mean S based on otolith ages was greater for adult females (0.80) than for adult males (0.75), but these differences were not significant. Applying the results of a study of agreement between scale and otolith ages, we modeled a scale age for each otolith-aged fish to reconstruct catch curves. Using modeled scale ages, estimates of S (0.42 for females, 0.36 for males) were comparable with those reported in past studies. We conducted a November 2005 acoustic and midwater trawl survey to estimate the abundance of ciscoes when the fish were being harvested for roe. Estimated exploitation rates were 0.085 for females and 0.025 for males, and the instantaneous rates of fishing mortality were 0.089 for females and 0.025 for males. The instantaneous rates of natural mortality were 0.131 and 0.265 for females and males, respectively. Using otolith ages, we found that strong year-classes at large during November 2005 were caught in high numbers as age-1 fish in previous annual bottom trawl surveys, whereas weak or absent year-classes were not. For decades, large-scale fisheries on the Great Lakes were allowed to operate because ciscoes were assumed to be short lived and to have regular recruitment. We postulate that the collapse of these fisheries was linked in part to a misunderstanding of cisco biology driven by scale-ageing error. ?? Copyright by the American Fisheries Society 2008.

  6. Small-scale field experiments accurately scale up to predict density dependence in reef fish populations at large scales

    PubMed Central

    Steele, Mark A.; Forrester, Graham E.

    2005-01-01

    Field experiments provide rigorous tests of ecological hypotheses but are usually limited to small spatial scales. It is thus unclear whether these findings extrapolate to larger scales relevant to conservation and management. We show that the results of experiments detecting density-dependent mortality of reef fish on small habitat patches scale up to have similar effects on much larger entire reefs that are the size of small marine reserves and approach the scale at which some reef fisheries operate. We suggest that accurate scaling is due to the type of species interaction causing local density dependence and the fact that localized events can be aggregated to describe larger-scale interactions with minimal distortion. Careful extrapolation from small-scale experiments identifying species interactions and their effects should improve our ability to predict the outcomes of alternative management strategies for coral reef fishes and their habitats. PMID:16150721

  7. Small-scale field experiments accurately scale up to predict density dependence in reef fish populations at large scales.

    PubMed

    Steele, Mark A; Forrester, Graham E

    2005-09-20

    Field experiments provide rigorous tests of ecological hypotheses but are usually limited to small spatial scales. It is thus unclear whether these findings extrapolate to larger scales relevant to conservation and management. We show that the results of experiments detecting density-dependent mortality of reef fish on small habitat patches scale up to have similar effects on much larger entire reefs that are the size of small marine reserves and approach the scale at which some reef fisheries operate. We suggest that accurate scaling is due to the type of species interaction causing local density dependence and the fact that localized events can be aggregated to describe larger-scale interactions with minimal distortion. Careful extrapolation from small-scale experiments identifying species interactions and their effects should improve our ability to predict the outcomes of alternative management strategies for coral reef fishes and their habitats. PMID:16150721

  8. Reductions in the mitochondrial DNA diversity of coral reef fish provide evidence of population bottlenecks resulting from Holocene sea-level change.

    PubMed

    Fauvelot, C; Bernardi, G; Planes, S

    2003-07-01

    This study investigated the influence of reproductive strategy (benthic or pelagic eggs) and habitat preferences (lagoon or outer slope) on both diversity and genetic differentiation using a set of populations of seven coral reef fish species over different geographic scales within French Polynesia. We hypothesized that a Holocene sea-level decrease contributed to severe reduction of population size for species inhabiting lagoons and a subsequent decrease of genetic diversity. Conversely, we proposed that species inhabiting stable environments, such as the outer slope, should demonstrate higher genetic diversity but also more structured populations because they have potentially reached a migration-genetic drift equilibrium. Sequences of the 5' end of the mitochondrial DNA (mtDNA) control region were compared among populations sampled in five isolated islands within two archipelagos of French Polynesia. For all the species, no significant divergences among populations were found. Significant differences in mtDNA diversity between lagoonal and outer-slope species were demonstrated both for haplotype diversity and sequence divergence but none were found between species with different egg types. Pairwise mismatch distributions suggested rapid population growth for all the seven species involved in this study, but they revealed different distributions, depending on the habitat preference of the species. Although several scenarios can explain the observed patterns, the hypothesis of population size reduction events relative to Holocene sea-level regression and its consequence on French Polynesia coral reefs is the most parsimonious. Outer-slope species have undergone a probable weak and/or old bottleneck (outer reefs persisted during low sea level, leading to reef area reductions), whereas lagoonal species suffered a strong and/or recent bottleneck since Holocene sea-level regression resulted in the drying out of all the atolls that are maximum 70 meters deep. Since

  9. Surveillance of Viruses in Wild Fish Populations in Areas around the Gulf of Cadiz (South Atlantic Iberian Peninsula)

    PubMed Central

    Moreno, Patricia; Olveira, José G.; Labella, Alejandro; Cutrín, Juan Manuel; Baro, Jorge C.; Borrego, Juan Jose

    2014-01-01

    This report describes a viral epidemiological study of wild fish around the Gulf of Cadiz (southwestern Iberian Peninsula) and is focused on infectious pancreatic necrosis virus (IPNV), viral hemorrhagic septicemia virus (VHSV), and viral nervous necrosis virus (VNNV). One fish species (Chelon labrosus) was sampled inside the gulf, at the mouth of the San Pedro River. Another 29 were sampled, in three oceanographic campaigns, at sites around the Bay of Cadiz. The fish were processed individually and subjected to isolation in cell culture and molecular diagnosis. VHSV was not isolated from any species. Thirteen IPNV-type isolates were obtained from barracuda (Sphyraena sphyraena), axillary seabream (Pagellus acarne), common two-banded seabream (Diplodus vulgaris), common pandora (P. erythrinus), Senegal seabream (D. bellottii), and surmullet (Mullus surmuletus). Six VNNV isolates were obtained from axillary seabream, common pandora, black seabream (Spondyliosoma cantharus), red mullet (Mullet barbatus), Lusitanian toadfish (Halobatrachus didactylus), and tub gurnard (Chelidonichtys lucerna). In the river mouth, viruses were detected only after reamplification, obtaining prevalence percentages of IPNV and VNNV (44.4 and 63.0%, respectively) much higher than those observed in the oceanographic campaigns (25.7 and 19.6%, respectively). The opposite results were obtained in the case of VHSV after reamplification: 11.1% in the river mouth and 43.6% in the oceanic locations. Analyzing the results with respect to the proximity of the sampling sites to the coast, an anthropogenic influence on wild fish is suggested and discussed. The type of viruses and the presence of natural reassortants are also discussed. PMID:25128341

  10. Methyl mercury exposure from fish consumption in vulnerable racial/ethnic populations: probabilistic SHEDS-Dietary model analyses using 1999-2006 NHANES and 1990-2002 TDS data.

    PubMed

    Xue, Jianping; Zartarian, Valerie G; Liu, Shi V; Geller, Andrew M

    2012-01-01

    NHANES subjects self-identified as "Asian, Pacific Islander, Native American, or multiracial" (A/P/N/M) have higher levels of blood organic mercury than other racial/ethnic groups; however, the reasons for this have been unclear. This research uses exposure modeling to determine the reasons for elevated blood methylmercury (MeHg) levels, and also extends previous analyses of observed NHANES blood levels. The probabilistic SHEDS-Dietary model was applied, using MeHg fish residue data from FDA's Total Diet Study (1990-2002) combined with NHANES/WWEIA (1999-2006) fish consumption data, to generate exposure estimates by race/ethnicity, age group, and fish type. Statistical analyses of blood methylmercury levels in the (6 times larger) 1999-2006 NHANES data were compared against previous published results for 1999-2002 data. The A/P/N/M group has higher fish intake, modeled MeHg exposures, and blood levels than the general population and other racial/ethnic groups. Tuna, other saltwater fish, and other freshwater fish are key food types driving dietary MeHg exposure. The 1-<3 years-old A/P/N/M group has the highest mean dietary MeHg intake per body weight (0.06 μg/kg/day; ~2.3 times higher than the rest of the population). Fish intake and modeled exposure predictions correlate well with NHANES blood biomarker levels. This study, using the SHEDS-Dietary model with national data, reinforces and expands upon previous observations that dietary exposure via fish consumption is an important route for methylmercury intake by the general population, and especially for racial/ethnic groups with higher fish consumption. These probabilistic dietary modeling approaches could be applied for local populations (e.g., tribes) and other chemicals and foods, if data are available. PMID:22119327

  11. Seasonal δ13C and δ15N isoscapes of fish populations along a continental shelf trophic gradient

    NASA Astrophysics Data System (ADS)

    Radabaugh, Kara R.; Hollander, David J.; Peebles, Ernst B.

    2013-10-01

    The West Florida Shelf, located in the eastern Gulf of Mexico, transitions from a eutrophic ecosystem dominated by the Mississippi River plume to mesotrophic and oligotrophic ecosystems off the coast of peninsular Florida. Three extensive trawl surveys in this region were used to acquire samples of fish muscle, benthic algae from sea urchin stomach contents, and filtered particulate organic matter (POM) to create δ13C and δ15N isoscapes. Muscle δ15N from three widely distributed fish species, Synodus foetens (inshore lizardfish), Calamus proridens (littlehead porgy), and Syacium papillosum (dusky flounder), exhibited strong longitudinal correlations (Pearson‧s r=-0.67 to -0.90, p<0.001) that coincided with the principal trophic gradient, whereas δ13C values of fish muscle and benthic algae were correlated with depth (Pearson‧s r=-0.34 to -0.73, p<0.05). Correlations between isotopic values and surface concentrations of chlorophyll and particulate organic carbon (POC) imply linkages between the isotopic baseline and transitions from eutrophic to oligotrophic waters. The δ13C depth gradient and the δ15N longitudinal gradient were consistent between seasons and years, providing a foundation for future stable isotope studies of animal migration in the Gulf of Mexico.

  12. Maintaining population persistence in the face of an extremely altered hydrograph: implications for three sensitive fishes in a tributary of the Green River, Utah

    USGS Publications Warehouse

    Bottcher, Jared L.

    2009-01-01

    The ability of an organism to disperse to suitable habitats, especially in modified and fragmented systems, determines individual fitness and overall population viability. The bluehead sucker (Catostomus discobolus), flannelmouth sucker (Catostomus latipinnis), and roundtail chub (Gila robusta) are three species native to the upper Colorado River Basin that now occupy only 50% of their historic range. Despite these distributional declines, populations of all three species are present in the San Rafael River, a highly regulated tributary of the Green River, Utah, providing an opportunity for research. Our goal was to determine the timing and extent of movement, habitat preferences, and limiting factors, ultimately to guide effective management and recovery of these three species. In 2007-2008, we sampled fish from 25 systematically selected, 300-m reaches in the lower 64 km of the San Rafael River, spaced to capture the range of species, life-stages, and habitat conditions present. We implanted all target species with a passive integrated transponder (PIT) tag, installed a passive PIT tag antennae, and measured key habitat parameters throughout each reach and at the site of native fish capture. We used random forest modeling to identify and rank the most important abiotic and biotic predictor variables, and reveal potential limiting factors in the San Rafael River. While flannelmouth sucker were relatively evenly distributed within our study area, highest densities of roundtail chub and bluehead sucker occurred in isolated, upstream reaches characterized by complex habitat. In addition, our movement and length-frequency data indicate downstream drift of age-0 roundtail chub, and active upstream movement of adult flannelmouth sucker, both from source populations, providing the lower San Rafael River with colonists. Our random forest analysis highlights the importance of pools, riffles, and distance-to-source populations, suggesting that bluehead sucker and roundtail

  13. Data-Limited Population-Status Evaluation of Two Coastal Fishes in Southern Angola Using Recreational Catch Length-Frequency Data.

    PubMed

    Beckensteiner, Jennifer; Kaplan, David M; Potts, Warren M; Santos, Carmen V; O'Farrell, Michael R

    2016-01-01

    Excessive truncation of a population's size structure is often identified as an important deleterious effect of exploitation, yet the effect on population persistence of size-structure truncation caused by exploitation is often not quantified due to data limitations. In this study, we estimate changes in eggs per recruit (EPR) using annual length-frequency samples over a 9 year period to assess persistence of the two most important recreational fishes in southern Angola: west coast dusky kob (Argyrosomus coronus) and leerfish (Lichia amia). Using a length- and age-structured model, we improve on an existing method to fit this type of model to length-frequency data and estimate EPR. The objectives of the methodological changes are to add flexibility and robustness to the approach for assessing population status in data-limited situations. Results indicate that dusky kob presents very low levels of EPR (5%-10% of the per recruit reproductive capacity in the absence of fishing) in 2013, whereas large inter-annual variability in leerfish estimates suggest caution must be applied when drawing conclusions about its exploitation status. Using simulated length frequency data with known parameter values, we demonstrate that recruitment decline due to overexploitation leads to overestimation of EPR values. Considering the low levels of EPR estimated for the study species, recruitment limitation is not impossible and true EPR values may be even lower than our estimates. It is, therefore, likely that management action, such as the creation of Marine Protected Areas, is needed to reconstitute the west coast dusky kob population. PMID:26829489

  14. Variation in fatty acid composition in muscle and heart tissues among species and populations of tropical fish in Lakes Victoria and Kyoga.

    PubMed

    Kwetegyeka, Justus; Mpango, George; Grahl-Nielsen, Otto

    2008-11-01

    The composition of the fatty acids in muscle and heart tissue of seven fish species, Nile perch (Lates niloticus), Nile tilapia (Oreochromis niloticus), marbled lungfish (Protopterus aethiopicus), African catfish (Clarias gariepinus), Lake Victoria squeaker (Synodontis victoriae), Bagrus docmas, and Tilapia zilli, from two locations in Lake Kyoga and one location in Lake Victoria was chemometrically determined. The muscle tissue was very lean, with an average of 3.4 mg total fatty acids per g tissue. The lipid level in the heart tissue was approximately five times higher than in the muscle tissue, with an average of 15.5 mg total fatty acids per g tissue. The n-3/n-6 level in the muscles was 1.7 +/- 0.7 and in the heart tissue 1.0 +/- 0.4. The muscle tissue contained an average of 46 mg cholesterol per 100 g, and the heart tissue contained about five times as much. Plasmalogens were detected in 7-8% of the amounts of total fatty acids in both muscle and heart tissue. The seven species had large differences (P < 0.05) in the fatty acid composition for both muscle and heart tissue. Within the species there were differences between fish from the populations in the three locations, although the population differences were smaller than the species differences. These differences appear to be controlled more closely by genetics/transcriptomics than by the diet. PMID:18712426

  15. Gendered Disparities in Quality of Cataract Surgery in a Marginalised Population in Pakistan: The Karachi Marine Fishing Communities Eye and General Health Survey

    PubMed Central

    Ahmad, Khabir; Zwi, Anthony B.; Tarantola, Daniel J. M.; Soomro, Abdul Qadeem; Baig, Rashid; Azam, Syed Iqbal

    2015-01-01

    Background Marine fishing communities are among the most marginalised and hard-to-reach groups and have been largely neglected in health research. We examined the quality of cataract surgery and its determinants, with an emphasis on gender, in marine fishing communities in Karachi, Pakistan, using multiple indicators of performance. Methods and Findings The Karachi Marine Fishing Communities Eye and General Health Survey was a door-to-door, cross-sectional study conducted between March 2009 and April 2010 in fishing communities living on 7 islands and in coastal areas in Keamari, Karachi, located on the Arabian Sea. A population-based sample of 638 adults, aged ≥ 50 years, was studied. A total of 145 eyes (of 97 persons) had undergone cataract surgery in this sample. Cataract surgical outcomes assessed included vision (presenting and best-corrected with a reduced logMAR chart), satisfaction with surgery, astigmatism, and pupil shape. Overall, 65.5% of the operated eyes had some form of visual loss (presenting visual acuity [PVA] < 6/12). 55.2%, 29.0%, and 15.9% of these had good, borderline, and poor visual outcomes based on presenting vision; with best correction, these values were: 68.3 %, 18.6%, and 13.1%, respectively. Of 7 covariates evaluated in the multivariable generalized estimating equations (GEE) analyses, gender was the only significant independent predictor of visual outcome. Women’s eyes were nearly 4.38 times more likely to have suboptimal visual outcome (PVA<6/18) compared with men’s eyes (adjusted odds ratio 4.38, 95% CI 1.96-9.79; P<0.001) after adjusting for the effect of household financial status. A higher proportion of women’s than men’s eyes had an irregular pupil (26.5% vs. 14.8%) or severe/very severe astigmatism (27.5% vs. 18.2%). However, these differences did not reach statistical significance. Overall, more than one fourth (44/144) of cataract surgeries resulted in dissatisfaction. The only significant predictor of

  16. Data-Limited Population-Status Evaluation of Two Coastal Fishes in Southern Angola Using Recreational Catch Length-Frequency Data

    PubMed Central

    Beckensteiner, Jennifer; Kaplan, David M.; Potts, Warren M.; Santos, Carmen V.; O’Farrell, Michael R.

    2016-01-01

    Excessive truncation of a population’s size structure is often identified as an important deleterious effect of exploitation, yet the effect on population persistence of size-structure truncation caused by exploitation is often not quantified due to data limitations. In this study, we estimate changes in eggs per recruit (EPR) using annual length-frequency samples over a 9 year period to assess persistence of the two most important recreational fishes in southern Angola: west coast dusky kob (Argyrosomus coronus) and leerfish (Lichia amia). Using a length- and age-structured model, we improve on an existing method to fit this type of model to length-frequency data and estimate EPR. The objectives of the methodological changes are to add flexibility and robustness to the approach for assessing population status in data-limited situations. Results indicate that dusky kob presents very low levels of EPR (5%-10% of the per recruit reproductive capacity in the absence of fishing) in 2013, whereas large inter-annual variability in leerfish estimates suggest caution must be applied when drawing conclusions about its exploitation status. Using simulated length frequency data with known parameter values, we demonstrate that recruitment decline due to overexploitation leads to overestimation of EPR values. Considering the low levels of EPR estimated for the study species, recruitment limitation is not impossible and true EPR values may be even lower than our estimates. It is, therefore, likely that management action, such as the creation of Marine Protected Areas, is needed to reconstitute the west coast dusky kob population. PMID:26829489

  17. Incorporating stochasticity in the study of exploited fish population dynamics: Implications for the study of post-recruitment harvest strategies.

    PubMed

    Councill, Elizabeth L

    2016-03-01

    Previous work has shown that an effective method of maintaining spawning stock biomass (SSB), the biomass of fish that are reproductively mature, within an exploited stock is to regulate harvest so that maximum fishing mortality rates occur after peak spawning during the year. This is known as post-recruitment harvest. The goal of this work is to examine if the advantages of post-recruitment harvest hold when reported stochasticity in the age and time distribution of harvest rates, known as selectivity, is considered. A hybrid dynamical systems model, one in which both continuous-time and discrete-time processes operate simultaneously, was derived, and recursive solutions were found. Results from other studies indicating the benefit of post-recruitment harvest were verified using this hybrid model when selectivity was considered fixed. Simulations were repeated including variance in selectivity using a Markov Chain Monte Carlo (MCMC) procedure. Results show that the benefits of post-recruitment harvest to the preservation of SSB were considerably less advantageous when each age class was assumed to be subject to annual stochastic selectivity. Furthermore, the stochastic scenarios gave estimates of SSB that were lower than their fixed selectivity analogs, indicating that the benefits of theoretical post-recruitment harvest may be diminished to some extent when stochasticity plays a large role in the dynamics. PMID:26721378

  18. The Genetic Basis of Chemical Tolerance in a Wild Population of the Estuarine Fish, Fundulus heterclitus (NUTMEG)

    EPA Science Inventory

    Wild populations of the killifish Fundulus heteroclitus residing in heavily contaminated North American Atlantic coast estuaries have recently and independently evolved dramatic, heritable, and adaptive polychlorinated biphenyl (PCB) tolerance. However, currently available genomi...

  19. Which Fish Should I Eat? Perspectives Influencing Fish Consumption Choices

    PubMed Central

    Choi, Anna L.; Karagas, Margaret R.; Mariën, Koenraad; Rheinberger, Christoph M.; Schoeny, Rita; Sunderland, Elsie; Korrick, Susan

    2012-01-01

    Background: Diverse perspectives have influenced fish consumption choices. Objectives: We summarized the issue of fish consumption choice from toxicological, nutritional, ecological, and economic points of view; identified areas of overlap and disagreement among these viewpoints; and reviewed effects of previous fish consumption advisories. Methods: We reviewed published scientific literature, public health guidelines, and advisories related to fish consumption, focusing on advisories targeted at U.S. populations. However, our conclusions apply to groups having similar fish consumption patterns. Discussion: There are many possible combinations of matters related to fish consumption, but few, if any, fish consumption patterns optimize all domains. Fish provides a rich source of protein and other nutrients, but because of contamination by methylmercury and other toxicants, higher fish intake often leads to greater toxicant exposure. Furthermore, stocks of wild fish are not adequate to meet the nutrient demands of the growing world population, and fish consumption choices also have a broad economic impact on the fishing industry. Most guidance does not account for ecological and economic impacts of different fish consumption choices. Conclusion: Despite the relative lack of information integrating the health, ecological, and economic impacts of different fish choices, clear and simple guidance is necessary to effect desired changes. Thus, more comprehensive advice can be developed to describe the multiple impacts of fish consumption. In addition, policy and fishery management inter-ventions will be necessary to ensure long-term availability of fish as an important source of human nutrition. PMID:22534056

  20. Fish Allergy

    MedlinePlus

    ... Story" 5 Things to Know About Zika & Pregnancy Fish Allergy KidsHealth > For Parents > Fish Allergy Print A ... From Home en español Alergia al pescado About Fish Allergy A fish allergy is not exactly the ...

  1. Differentiation of Tetragenococcus populations occurring in products and manufacturing processes of puffer fish ovaries fermented with rice-bran.

    PubMed

    Kobayashi, T; Kimura, B; Fujii, T

    2000-06-01

    Tetragenococcus strains isolated from the manufacturing process of Japanese puffer fish ovaries fermented with rice-bran were characterized and differentiated phenotypically and genotypically. A total of 413 Tetragenococcus isolates were evaluated. On the basis of five representative substrates, the isolates were grouped into seven groups. An RFLP (restriction fragment length polymorphisms) analysis of the 16S rRNA gene of representative strains of major groups revealed that they could be grouped into two groups: one was identified as the most prominent halophilic lactic acid coccus, Tetragenococcus halophilus, and the other as T. muriaticus, which has recently been added to the genus Tetragenococcus as a new species. Physiologically, the major differences between the two groups were found in the ability to grow in medium not supplemented with NaCl and the fermentation of L-arabinose, sucrose and D-mannitol, and several other carbohydrates. PMID:10857547

  2. Fish assemblage structure following Impoundment of a Great Plains river

    USGS Publications Warehouse

    Quist, M.C.; Hubert, W.A.; Rahel, F.J.

    2005-01-01

    Understanding the upstream and downstream effect of impoundments on stream fish assemblages is important in managing fish populations and predicting the effects of future human activities on stream ecosystems. We used information collected over a 41-year period (1960-2001) to assess changes in fish assemblage structure resulting from impoundment of the Laramie River by Grayrocks Reservoir. Prior to impoundment (i.e., 1960-1979), fish assemblages were dominated by native catostomids and cyprinids. After impoundment several exotic species (e.g., smallmouth bass [Micropterus dolomieu], walleye [Sander vitreus; formerly Stizostedion vitreum], yellow perch [Perca flavescens], brown trout [Salmo trutta]) were sampled from reaches upstream and downstream of the reservoir. Suckermouth minnows (Phenacobius mirabilis) were apparently extirpated, and hornyhead chubs (Nocomis biguttatus) and common shiners (Luxilus cornutus) became rare upstream of Grayrocks Reservoir. The lower Laramie River downstream from Grayrocks Reservoir near its mouth retains habitat characteristics similar to those prior to impoundment (e.g., shallow, braided channel morphology) and is the only downstream area where several sensitive species persist, including sucker-mouth minnows, hornyhead chubs, and bigmouth shiners (Notropis dorsalis). Grayrocks Reservoir serves as a source of exotic piscivores to both upstream and downstream reaches and has altered downstream habitat characteristics. These impacts have had a substantial influence on native fish assemblages. Our results suggest that upstream and downstream effects of impoundment on fish assemblage structure are similar and that downstream reaches which retain habitat characteristics similar to pre-impoundment conditions may serve as areas of refuge for native species.

  3. One Fish Two Fish.

    ERIC Educational Resources Information Center

    Hoffman, Michele

    1998-01-01

    This activity explains fisheries resource management to seven-year olds. First-grade students learn concepts such as offspring viability, life expectancy, and distribution of species, which help to determine when, where, and how people fish and the importance of fishing responsibly. Lists materials, procedures, and extensions. (SJR)

  4. Genetic relationships between Atlantic and Pacific populations of the notothenioid fish Eleginops maclovinus: the footprints of Quaternary glaciations in Patagonia.

    PubMed

    Ceballos, S G; Lessa, E P; Licandeo, R; Fernández, D A

    2016-04-01

    The genetic relationships between the Pacific and the Atlantic populations of marine coastal biota in Southern South America have been analyzed in few studies, most of them relying on a single mitochondrial locus. We analyzed 10 polymorphic microsatellite loci, isolated from a dinucleotide-enriched Eleginops maclovinus genomic library, in a total of 240 individuals (48 from each of 5 sampled sites: 2 Atlantic, 2 Pacific and 1 in Beagle Channel). The results were contrasted against a previous work on the same species with mitochondrial DNA (mtDNA). Observed heterozygosity within localities ranged from 0.85 to 0.88 with the highest overall number of alleles observed at the northernmost locality on the Pacific side (Concepción), but no clear geographic pattern arose from the data. On the other hand, the number of private alleles was negatively correlated with latitude (Spearman's rs test, P=0.017). Among-population variance was low but significant (1.35%; P<0.0001, analysis of molecular variance (AMOVA)) and low genetic differentiation between populations was observed (pairwise FST values ranged from 0 to 0.021). A Mantel test revealed a significant correlation between geographic distances and FST (r=0.56, P=0.047). This could be partially accounted by the Atlantic versus Pacific population differentiation detected in three different analyses (STRUCTURE, SAMOVA (Spatial Analysis of MOlecular VAriance) and a population phylogeny). The observed pattern is compatible with a history of separation into two glacial refugia that was better captured by the multilocus microsatellite data than by the mtDNA analysis. PMID:26696136

  5. Constructing priors in synesthesia.

    PubMed

    van Leeuwen, Tessa M

    2014-01-01

    A new theoretical framework (PPSMC) applicable to synesthesia has been proposed, in which the discrepancy between the perceptual reality of (some) synesthetic concurrents and their subjective non-veridicality is being explained. The PPSMC framework stresses the relevance of the phenomenology of synesthesia for synesthesia research-and beyond. When describing the emergence and persistence of synesthetic concurrents under PPSMC, it is proposed that precise, high-confidence priors are crucial in synesthesia. I discuss the construction of priors in synesthesia. PMID:24702569

  6. Fish allergy: in review.

    PubMed

    Sharp, Michael F; Lopata, Andreas L

    2014-06-01

    Globally, the rising consumption of fish and its derivatives, due to its nutritional value and divergence of international cuisines, has led to an increase in reports of adverse reactions to fish. Reactions to fish are not only mediated by the immune system causing allergies, but are often caused by various toxins and parasites including ciguatera and Anisakis. Allergic reactions to fish can be serious and life threatening and children usually do not outgrow this type of food allergy. The route of exposure is not only restricted to ingestion but include manual handling and inhalation of cooking vapors in the domestic and occupational environment. Prevalence rates of self-reported fish allergy range from 0.2 to 2.29 % in the general population, but can reach up to 8 % among fish processing workers. Fish allergy seems to vary with geographical eating habits, type of fish processing, and fish species exposure. The major fish allergen characterized is parvalbumin in addition to several less well-known allergens. This contemporary review discusses interesting and new findings in the area of fish allergy including demographics, novel allergens identified, immunological mechanisms of sensitization, and innovative approaches in diagnosing and managing this life-long disease. PMID:23440653

  7. Fish Commoditization: Sustainability Strategies to Protect Living Fish

    ERIC Educational Resources Information Center

    Lam, Mimi E.; Pitcher, Tony J.

    2012-01-01

    The impacts of early fishing on aquatic ecosystems were minimal, as primitive technologies were used to harvest fish primarily for food. As fishing technology grew more sophisticated and human populations dispersed and expanded, local economies transitioned from subsistence to barter and trade. Expanded trade networks and mercantilization led to…

  8. Genome position specific priors for genomic prediction

    PubMed Central

    2012-01-01

    Background The accuracy of genomic prediction is highly dependent on the size of the reference population. For small populations, including information from other populations could improve this accuracy. The usual strategy is to pool data from different populations; however, this has not proven as successful as hoped for with distantly related breeds. BayesRS is a novel approach to share information across populations for genomic predictions. The approach allows information to be captured even where the phase of SNP alleles and casuative mutation alleles are reversed across populations, or the actual casuative mutation is different between the populations but affects the same gene. Proportions of a four-distribution mixture for SNP effects in segments of fixed size along the genome are derived from one population and set as location specific prior proportions of distributions of SNP effects for the target population. The model was tested using dairy cattle populations of different breeds: 540 Australian Jersey bulls, 2297 Australian Holstein bulls and 5214 Nordic Holstein bulls. The traits studied were protein-, fat- and milk yield. Genotypic data was Illumina 777K SNPs, real or imputed. Results Results showed an increase in accuracy of up to 3.5% for the Jersey population when using BayesRS with a prior derived from Australian Holstein compared to a model without location specific priors. The increase in accuracy was however lower than was achieved when reference populations were combined to estimate SNP effects, except in the case of fat yield. The small size of the Jersey validation set meant that these improvements in accuracy were not significant using a Hotelling-Williams t-test at the 5% level. An increase in accuracy of 1-2% for all traits was observed in the Australian Holstein population when using a prior derived from the Nordic Holstein population compared to using no prior information. These improvements were significant (P<0.05) using the Hotelling

  9. Augmented Fish Health Monitoring in Idaho, 1992 Annual Report.

    SciTech Connect

    Munson, A.Douglas

    1993-12-01

    This report documents the progress of Idaho Department of Fish and Game`s fish health monitoring during the past five years and will serve as a completion report for the Augmented Fish Health Monitoring Project. Anadromous fish at twelve IDFG facilities were monitored for various pathogens and organosomatic analyses were performed to anadromous fish prior to their release. A fish disease database has been developed and data is presently being entered. Alternate funding has been secured to continue fish health monitoring.

  10. Stretched to the limit; can a short pelagic larval duration connect adult populations of an Indo-Pacific diadromous fish (Kuhlia rupestris)?

    PubMed

    Feutry, P; Vergnes, A; Broderick, D; Lambourdière, J; Keith, P; Ovenden, J R

    2013-03-01

    Freshwater species on tropical islands face localized extinction and the loss of genetic diversity. Their habitats can be ephemeral due to variability in freshwater run-off and erosion. Even worse, anthropogenic effects on these ecosystems are intense. Most of these species are amphidromous or catadromous (i.e. their life cycle includes a marine larval phase), which buffers them against many of these effects. A long pelagic larval duration (PLD) was thought to be critical to ensure the colonization and persistence in tropical islands, but recent findings indicated that several species with short PLDs are successful in those ecosystems. To test the potential of a short PLD in maintaining genetic connectivity and forestalling extirpation, we studied Kuhlia rupestris, a catadromous fish species with an extensive distribution in the western Pacific and Indian Oceans. Using a combination of molecular genetic markers (13 microsatellite loci and two gene regions from mtDNA) and modelling of larval dispersal, we show that a short PLD constrains genetic connectivity over a wide geographical range. Molecular markers showed that the short PLD did not prevent genetic divergence through evolutionary time and speciation has occurred or is occurring. Modelling of larvae dispersal suggested limited recent connectivity between genetically homogeneous populations across the Coral Sea. However, a short PLD can maintain connectivity on a subocean basin scale. Conservation and management of tropical diadromous species needs to take into account that population connectivity may be more limited than previously suspected in those species. PMID:23294379

  11. Fish assemblage response to a small dam removal in the Eightmile River system, Connecticut, USA.

    PubMed

    Poulos, Helen M; Miller, Kate E; Kraczkowski, Michelle L; Welchel, Adam W; Heineman, Ross; Chernoff, Barry

    2014-11-01

    We examined the effects of the Zemko Dam removal on the Eightmile River system in Salem, Connecticut, USA. The objective of this research was to quantify spatiotemporal variation in fish community composition in response to small dam removal. We sampled fish abundance over a 6-year period (2005-2010) to quantify changes in fish assemblages prior to dam removal, during drawdown, and for three years following dam removal. Fish population dynamics were examined above the dam, below the dam, and at two reference sites by indicator species analysis, mixed models, non-metric multidimensional scaling, and analysis of similarity. We observed significant shifts in fish relative abundance over time in response to dam removal. Changes in fish species composition were variable, and they occurred within 1 year of drawdown. A complete shift from lentic to lotic fishes failed to occur within 3 years after the dam was removed. However, we did observe increases in fluvial and transition (i.e., pool head, pool tail, or run) specialist fishes both upstream and downstream from the former dam site. Our results demonstrate the importance of dam removal for restoring river connectivity for fish movement. While the long-term effects of dam removal remain uncertain, we conclude that dam removals can have positive benefits on fish assemblages by enhancing river connectivity and fluvial habitat availability. PMID:25022888

  12. Eating fish for two

    PubMed Central

    Strain, JJ

    2014-01-01

    Summary This article is based on the British Nutrition Foundation’s Annual Lecture, which focused on maternal fish consumption and the effects of methylmercury (MeHg) on fetal development, with respect to current guidance and policy on fish consumption during pregnancy. Fish makes a valuable contribution to nutrient intakes across the globe and is the primary protein source for many individuals, particularly those in the developing world. Populations with a high fish consumption, such as in the Republic of the Seychelles, have a greater exposure to MeHg, which is present in varying amounts in all fish. Methylmercury is a toxic pollutant, which is known to impair neurodevelopment. The dose of MeHg from fish consumption, however, needed to impair neurodevelopment is unknown. Current UK and US guidance on fish consumption during pregnancy tend to focus more on avoiding risks rather than highlighting the benefits which can be obtained from eating fish. Such recommendations have been mainly based on data arising from epidemiological studies in the Faroe Islands, where methylmercury exposure was largely from pilot whale consumption. Although small adverse effects on child development have been reported in data from the Faroe Islands, data from the on-going Seychelles Child Development Studies have shown no adverse effects of prenatal methlymercury exposure from high maternal fish consumption (9–12 meals containing fish per week) on developmental outcomes. Instead these data suggest that nutrients, including long chain polyunsaturated fatty acids (LC-PUFAs), provided by fish may offer a beneficial effect and attenuate or modify any effects of MeHg on developmental outcomes. Recent expert consultations have concluded that the health benefits of fish consumption outweigh the risks posed by MeHg exposure and have argued the need for improved education and guidance to highlight the importance of consuming nutrients, including LC-PUFAs, from fish for optimal child

  13. Heterogeneity of HIV incidence: a comparative analysis between fishing communities and in a neighbouring rural general population, Uganda, and implications for HIV control

    PubMed Central

    Kamali, A; Nsubuga, R N; Ruzagira, E; Bahemuka, U; Asiki, G; Price, M A; Newton, R; Kaleebu, P; Fast, P

    2016-01-01

    Objectives To describe HIV heterogeneity in rural Uganda using incidence data collected between January 2012 and December 2014 among fishing cohort (FC) and in an adjacent rural general population cohort (GPC). Methods In the FC, eligible HIV high-risk adults aged 18+ years were enrolled, followed and HIV tested every 3 months. Demographic and sexual behaviour data were also collected. The GPC, approximately 47 km away from the FC, was followed through annual surveys, and sociodemographic and behavioural data collected. A subset of GPC with comparable risk profiles to the FC was selected. We presented sociodemographic and risk profiles and also computed stratified HIV incidence. Cox regression was used to assess factors associated with HIV incidence. Results Overall HIV incidence was higher in the FC than in the ‘high-risk’ GPC, 6.04 and 0.56 per 100 person years at risk, respectively, with a rate ratio (RR) of 10.83 (95% CI 6.11 to 19.76). This was higher among those aged 18–24 years, unmarried and those with more than two sex partners in the past year, RR of 15.44, 22.99 and 19.29, respectively. In the FC, factors associated with high incidence in multivariate analysis were duration in the community and unprotected sex. The factors in the GPC were ethnicity, marital status and duration in the community. Conclusions We have observed a substantial heterogeneity in HIV incidence. The high incidence in fishing communities is contributing greatly to the overall HIV burden in Uganda, and thus urgent combination prevention efforts are needed towards national goal to reduce HIV epidemic. PMID:26933046

  14. Population genetic structure and phylogeography of cyprinid fish, Labeo dero (Hamilton, 1822) inferred from allozyme and microsatellite DNA marker analysis.

    PubMed

    Chaturvedi, Anshumala; Mohindra, Vindhya; Singh, Rajeev K; Lal, Kuldeep K; Punia, Peyush; Bhaskar, Ranjana; Mandal, Anup; Narain, Lalit; Lakra, W S

    2011-06-01

    We examined population structure of Labeo dero (Hamilton, 1822) from different riverine locations in India using 10 polymorphic allozyme and eight microsatellite loci. For analysis, 591 different tissue samples were obtained from commercial catches covering a wide geographic range. Allozyme variability (An = 1.28-1.43, Ho = 0.029-0.071) was much lower than for microsatellites (An = 4.625-6.125, Ho = 0.538-0.633). Existence of rare alleles was found at three allozyme (MDH-2, GPI and PGDH) and at two microsatellite loci (R-3 and MFW-15). Deviation from Hardy-Weinberg equilibrium (P < 0.05, after the critical probability levels were adjusted for sequential Bonferroni adjustment) could be detected at three loci (EST-1, -2 and XDH) whereas, after correction for null alleles, two microsatellite loci (MFW-1,-15) deviated from HWE in the river Yamuna. Fst for all the samples combined over all allozyme loci was found to be 0.059 suggesting that 5.9% of the total variation was due to genetic differentiation while microsatellite analysis yielded 0.019 which was concordant to mean Rst (0.02). Hierarchical partition of genetic diversity (AMOVA) showed that greater variability (approx. 95%) was due to within population component than between geographical regions. Based on distribution of genetic differentiation detected by both markers, at least five different genetic stocks of L. dero across its natural distribution could be identified. These results are useful for the evaluation and conservation of L. dero in natural water bodies. PMID:21132388

  15. Fish, omega-3 long-chain fatty acids, and all-cause mortality in a low-income US population: results from the Southern Community Cohort Study

    PubMed Central

    Villegas, R; Takata, Y; Murff, H; Blot, WJ

    2015-01-01

    Background We examined associations between fish and n-3 LCFA and mortality in a prospective study with a large proportion of blacks with low socio-economic status. Methods and Results We observed 6,914 deaths among 77,604 participants with dietary data (follow-up time 5.5 years). Of these, 77,100 participants had available time-to-event data. We investigated associations between mortality with fish and n-3 LCFA intake, adjusting for age, race, sex, kcals/day, body mass index (BMI), smoking, alcohol consumption, physical activity, income, education, chronic disease, insurance coverage, and meat intake. Intakes of fried fish, baked/grilled fish and total fish, but not tuna, were associated with lower mortality among all participants. Analysis of trends in overall mortality by quintiles of intake showed that intakes of fried fish, baked/grilled fish and total fish, but not tuna, were associated with lower risk of total mortality among all participants. When participants with chronic disease were excluded, the observed association remained only between intakes of baked/grilled fish, while fried fish was associated with lower risk of mortality in participants with prevalent chronic disease. The association between n-3 LCFA intake and lower risk of mortality was significant among those with diabetes at baseline. There was an inverse association of mortality with fried fish intake in men, but not women. Total fish and baked/grilled fish intakes were associated with lower mortality among blacks while fried fish intake was associated with lower mortality among whites. Effect modifications were not statistically significant. Conclusion Our findings suggest a modest benefit of fish consumption on mortality. PMID:26026210

  16. Significant effects of fishing gear selectivity on fish life history

    NASA Astrophysics Data System (ADS)

    Liang, Zhenlin; Sun, Peng; Yan, Wei; Huang, Liuyi; Tang, Yanli

    2014-06-01

    Over the past few decades, extreme changes have occurred in the characters of exploited fish populations. The majority of these changes have affected the growth traits of fish life history, which include a smaller size-at-age, an earlier age-at-maturation and among others. Currently, the causes of these life history traits changes still require systematic analyses and empirical studies. The explanations that have been cited are merely expressed in terms of fish phenotypic adaptation. It has been claimed that the original traits of fish can be recovered once the intensity of exploitation of the fish is controlled. Sustained environmental and fishing pressure will change the life history traits of most fish species, so the fish individual's traits are still in small size-at-age and at earlier age-at-maturation in exploited fish populations. In this paper, we expressed our view of points that fishing gear has imposed selectivity on fish populations and individuals as various other environmental factors have done and such changes are unrecoverable. According to the existing tend of exploited fish individual's life history traits, we suggested further researches in this field and provided better methods of fishery management and thereby fishery resources protection than those available early.

  17. Fish Hearing.

    ERIC Educational Resources Information Center

    Blaxter, J. H. S.

    1980-01-01

    Provides related information about hearing in fish, including the sensory stimulus of sound in the underwater environment, mechanoreceptors in fish, pressure perception and the swimbladder, specializations in sound conduction peculiar to certain fish families. Includes numerous figures. (CS)

  18. City Fishing.

    ERIC Educational Resources Information Center

    Lange, Robert E.

    1979-01-01

    A program of supplying opportunities for fishing at locations within and near urban areas was developed. This effort included stocking, management of bodies of water for fishing, and presentation of fishing clinics for urban fishermen. (RE)

  19. Genetic Connectivity among and Self-Replenishment within Island Populations of a Restricted Range Subtropical Reef Fish

    PubMed Central

    van der Meer, Martin H.; Hobbs, Jean-Paul A.; Jones, Geoffrey P.; van Herwerden, Lynne

    2012-01-01

    Marine protected areas (MPAs) are increasingly being advocated and implemented to protect biodiversity on coral reefs. Networks of appropriately sized and spaced reserves can capture a high proportion of species diversity, with gene flow among reserves presumed to promote long term resilience of populations to spatially variable threats. However, numerically rare small range species distributed among isolated locations appear to be at particular risk of extinction and the likely benefits of MPA networks are uncertain. Here we use mitochondrial and microsatellite data to infer evolutionary and contemporary gene flow among isolated locations as well as levels of self-replenishment within locations of the endemic anemonefish Amphiprion mccullochi, restricted to three MPA offshore reefs in subtropical East Australia. We infer high levels of gene flow and genetic diversity among locations over evolutionary time, but limited contemporary gene flow amongst locations and high levels of self-replenishment (68 to 84%) within locations over contemporary time. While long distance dispersal explained the species’ integrity in the past, high levels of self-replenishment suggest locations are predominantly maintained by local replenishment. Should local extinction occur, contemporary rescue effects through large scale connectivity are unlikely. For isolated islands with large numbers of endemic species, and high local replenishment, there is a high premium on local species-specific management actions. PMID:23185398

  20. Genetic connectivity among and self-replenishment within island populations of a restricted range subtropical reef fish.

    PubMed

    van der Meer, Martin H; Hobbs, Jean-Paul A; Jones, Geoffrey P; van Herwerden, Lynne

    2012-01-01

    Marine protected areas (MPAs) are increasingly being advocated and implemented to protect biodiversity on coral reefs. Networks of appropriately sized and spaced reserves can capture a high proportion of species diversity, with gene flow among reserves presumed to promote long term resilience of populations to spatially variable threats. However, numerically rare small range species distributed among isolated locations appear to be at particular risk of extinction and the likely benefits of MPA networks are uncertain. Here we use mitochondrial and microsatellite data to infer evolutionary and contemporary gene flow among isolated locations as well as levels of self-replenishment within locations of the endemic anemonefish Amphiprion mccullochi, restricted to three MPA offshore reefs in subtropical East Australia. We infer high levels of gene flow and genetic diversity among locations over evolutionary time, but limited contemporary gene flow amongst locations and high levels of self-replenishment (68 to 84%) within locations over contemporary time. While long distance dispersal explained the species' integrity in the past, high levels of self-replenishment suggest locations are predominantly maintained by local replenishment. Should local extinction occur, contemporary rescue effects through large scale connectivity are unlikely. For isolated islands with large numbers of endemic species, and high local replenishment, there is a high premium on local species-specific management actions. PMID:23185398

  1. 2005 Annual Synthesis Report, Pallid Sturgeon Population Assessment Program and Associated Fish Community Monitoring for the Missouri River

    SciTech Connect

    Oldenburg, Eric W.; Hanrahan, Timothy P.; Harnish, Ryan A.; Bellgraph, Brian J.; Duncan, Joanne P.; Allwardt, Craig H.

    2008-08-12

    Pallid sturgeon, Scaphirhynchus albus, have declined throughout the Missouri River since dam construction and inception of the Bank Stabilization and Navigation Project in 1912. Their decline likely is due to the loss and degradation of their natural habitat as a result of changes in the river’s structure and function, as well as the pallid sturgeon’s inability to adapt to these changes. The U. S. Army Corps of Engineers has been working with state and federal agencies to develop and conduct a Pallid Sturgeon Monitoring and Assessment Program (Program), with the goal of recovering pallid sturgeon populations. The Program has organized the monitoring and assessment efforts into distinct geographic segments, with state and federal resource management agencies possessing primary responsibility for one or more segment. To date, the results from annual monitoring have been reported for individual Program segments. However, monitoring results have not been summarized or evaluated for larger spatial scales, encompassing more than one Program segment. This report describes a summary conducted by the Pacific Northwest National Laboratory (PNNL) that synthesizes the 2005 sampling year monitoring results from individual segments.

  2. 2006 Annual Synthesis Report, Pallid Sturgeon Population Assessment Program and Associated Fish Community Monitoring for the Missouri River

    SciTech Connect

    Oldenburg, Eric W.; Hanrahan, Timothy P.; Harnish, Ryan A.; Bellgraph, Brian J.; Duncan, Joanne P.; Allwardt, Craig H.

    2008-08-12

    Pallid sturgeon, Scaphirhynchus albus, have declined throughout the Missouri River since dam construction and inception of the Bank Stabilization and Navigation Project in 1912. Their decline likely is due to the loss and degradation of their natural habitat as a result of changes in the river’s structure and function, as well as the pallid sturgeon’s inability to adapt to these changes. The U. S. Army Corps of Engineers has been working with state and federal agencies to develop and conduct a Pallid Sturgeon Monitoring and Assessment Program (Program), with the goal of recovering pallid sturgeon populations. The Program has organized the monitoring and assessment efforts into distinct geographic segments, with state and federal resource management agencies possessing primary responsibility for one or more segment. To date, the results from annual monitoring have been reported for individual Program segments. However, monitoring results have not been summarized or evaluated for larger spatial scales, encompassing more than one Program segment. This report describes a summary conducted by the Pacific Northwest National Laboratory (PNNL) that synthesizes the 2006 sampling year monitoring results from individual segments.

  3. Modeled methylmercury exposure and risk from rice consumption for vulnerable populations in a traditional fish-eating area in China.

    PubMed

    Tong, Yin-Dong; Ou, Lang-Bo; Chen, Long; Wang, Huan-Huan; Chen, Cen; Wang, Xue-Jun; Zhang, Wei; Wang, Qi-Guang

    2015-05-01

    The circulation of rice from contaminated areas could escalate exposure risk from a local problem to a national issue and affect a wider population beyond the region of origin, as confirmed by the "Poison Rice Incident" in May 2013 in Guangzhou, China. In the present study, the authors established a food chain model based on the aquivalence method to identify major sources of methylmercury (MeHg), estimate the levels of MeHg, and quantify exposure to MeHg via rice and aquatic food consumption. Different types of organism samples from the Haihe River also were collected to verify the calculated values. The MeHg intake in pregnant women was 1529.1 ng/d from the aquatic food chain and as high as 2804.0 ng/d from rice, although the intake varied among scenarios. The maximum possible MeHg concentration in the blood of pregnant women was 5.21 µg/L, higher than the threshold value of MeHg recommended by the US Environmental Protection Agency (4.4 µg/L), which indicated that pregnant women could face risk from MeHg exposure. The authors also assessed the risk of MeHg exposure in pregnant women and their breastfed infants using a new index, HQEquivalent . In 4 scenarios, the HQEquivalent indices ranged from 0.42 to 1.18 for pregnant women and from 0.29 to 0.83 for breastfed infants. PMID:25639888

  4. Body growth and reproduction of individuals of the sciaenid fish Stellifer rastrifer in a shallow tropical bight: A cautionary tale for assumptions regarding population parameters

    NASA Astrophysics Data System (ADS)

    Pombo, Maíra; Denadai, Márcia Regina; Turra, Alexander

    2013-05-01

    Knowledge of population parameters and the ability to predict their responses to environmental changes are useful tools to aid in the appropriate management and conservation of natural resources. Samples of the sciaenid fish Stellifer rastrifer were taken from August 2003 through October 2004 in shallow areas of Caraguatatuba Bight, southeastern Brazil. The results showed a consistent presence of length-frequency classes throughout the year and low values of the gonadosomatic index of this species, indicating that the area is not used for spawning or residence of adults, but rather shelters individuals in late stages of development. The results may serve as a caveat for assessments of transitional areas such as the present one, the nursery function of which is neglected compared to estuaries and mangroves. The danger of mismanaging these areas by not considering their peculiarities is emphasized by using these data as a study case for the development of some broadly used population-parameter analyses. The individuals' body growth parameters from the von Bertalanffy model were estimated based on the most common approaches, and the best values obtained from traditional quantification methods of selection were very prone to bias. The low gonadosomatic index (GSI) estimated during the period was an important factor in stimulating us to select more reliable parameters of body growth (L∞ = 20.9, K = 0.37 and Z = 2.81), which were estimated based on assuming the existence of spatial segregation by size. The data obtained suggest that the estimated mortality rate included a high rate of migration of older individuals to deeper areas, where we assume that they completed their development.

  5. Use of NARCCAP data to characterize regional climate uncertainty in the impact of global climate change on large river fish population: Missouri River sturgeon example

    NASA Astrophysics Data System (ADS)

    Anderson, C. J.; Wildhaber, M. L.; Wikle, C. K.; Moran, E. H.; Franz, K. J.; Dey, R.

    2012-12-01

    Climate change operates over a broad range of spatial and temporal scales. Understanding the effects of change on ecosystems requires accounting for the propagation of information and uncertainty across these scales. For example, to understand potential climate change effects on fish populations in riverine ecosystems, climate conditions predicted by course-resolution atmosphere-ocean global climate models must first be translated to the regional climate scale. In turn, this regional information is used to force watershed models, which are used to force river condition models, which impact the population response. A critical challenge in such a multiscale modeling environment is to quantify sources of uncertainty given the highly nonlinear nature of interactions between climate variables and the individual organism. We use a hierarchical modeling approach for accommodating uncertainty in multiscale ecological impact studies. This framework allows for uncertainty due to system models, model parameter settings, and stochastic parameterizations. This approach is a hybrid between physical (deterministic) downscaling and statistical downscaling, recognizing that there is uncertainty in both. We use NARCCAP data to determine confidence the capability of climate models to simulate relevant processes and to quantify regional climate variability within the context of the hierarchical model of uncertainty quantification. By confidence, we mean the ability of the regional climate model to replicate observed mechanisms. We use the NCEP-driven simulations for this analysis. This provides a base from which regional change can be categorized as either a modification of previously observed mechanisms or emergence of new processes. The management implications for these categories of change are significantly different in that procedures to address impacts from existing processes may already be known and need adjustment; whereas, an emergent processes may require new management

  6. Population growth, trophic level, and reproductive biology of two congeneric archer fishes (Toxotes chatareus, Hamilton 1822 and Toxotes jaculatrix, Pallas 1767) inhabiting Malaysian coastal waters*

    PubMed Central

    Simon, K. D.; Bakar, Y.; Samat, A.; Zaidi, C. C.; Aziz, A.; Mazlan, A. G.

    2009-01-01

    Population growth, trophic level, and some aspects of reproductive biology of two congeneric archer fish species, Toxotes chatareus and Toxotes jaculatrix, collected from Johor coastal waters, Malaysia, were studied. Growth pattern by length-weight relationship (W=aLb) for the sexes differed, and exhibited positive allometric growth (male, female and combined sexes of T. chatareus; female and combined sexes of T. jaculatrix) and isometric growth (male samples of T. jaculatrix only). Trophic levels of both species were analyzed based on 128 specimens. The results show that, in both species, crustaceans and insects were the most abundant prey items, and among crustaceans the red clawed crab Sesarma bidens and Formicidae family insects were the most represented taxa. The estimated mean trophic levels for T. chatareus and T. jaculatrix were 3.422±0.009 and 3.420±0.020, respectively, indicating that they are largely carnivores. Fecundity of T. chatareus ranged from 38 354 to 147 185 eggs for females with total length ranging from 14.5 to 22.5 cm and total body weight from 48.7 to 270.2 g, and T. jaculatrix 25 251 to 150 456 eggs for females with total length ranging from 12.2 to 23.0 cm and total body weight from 25.7 to 275.0 g. Differences in values of gonadosomatic and hepatosomatic indexes calculated for both species in this study may have resulted from uneven sample size ranges. PMID:19946954

  7. Analysis of hepatic deiodinase 2 mRNA levels in natural fish lake populations exposed to different levels of putative thyroid disrupters.

    PubMed

    Jarque, Sergio; Bosch, Carme; Casado, Marta; Grimalt, Joan O; Raldúa, Demetrio; Piña, Benjamin

    2014-04-01

    Hepatic mRNA levels of the dio2 gene (deiodinase 2), implicated in thyroid hormone homeostasis, were analyzed in trout from six remote lakes in the Pyrenees (Spain) and the Tatra Mountains (Slovakia). Highest levels corresponded to fish from the two coldest lakes in Pyrenees, whereas relatively low levels were found in the Tatra lakes. These values correlated with the presence of highly-brominated polybrominated diphenyl ethers (PBDE) congeners in the muscle of the same animals, reflecting the distribution of these compounds across European mountain ranges. In contrast, cyp1a expression levels, diagnostic for the presence of dioxin-like pollutants, mirrored the distribution of semi-volatile organochlorine compounds, indicating the specificity of the two types of biological responses. Exposure to PDBEs is known to increase transcription of dio2 and other thyroid-related genes in laboratory experiments; we propose that our data reflects the same phenomenon in natural populations, driven by anthropogenic pollutants at the environmental concentrations. PMID:24530182

  8. Guidelines for use of fishes in research

    USGS Publications Warehouse

    Use of Fishes in Research Committee (joint committee of the American Fisheries Society, the American Institute of Fishery Research Biologists, and the American Society of Ichthyologists and Herpetologists)

    2014-01-01

    The 2004 and 2014 Guidelines were developed to provide a structure that advances appropriate attention toward valid experimental designs and procedures with aquatic animals while ensuring humane treatment of the experimental subjects. At a practical level, the Guidelines are intended to provide general recommendations on field and laboratory endeavors, such as sampling, holding, and handling fishes; to offer information on administrative matters, including regulations and permits; and to address typical ethical concerns, such as perceptions of pain or discomfort experienced by experimental subjects. These Guidelines must be recognized as guidelines. They are not intended to provide detailed instructions but rather to alert investigators to a broad array of topics and concerns to consider prior to initiating study. At a comprehensive level, the principles upon which these Guidelines are based are broadly applicable, and many of the described practices and approaches can be adapted to situations involving other aquatic animal species and conditions. Understanding the differences between fishes and other vertebrates, especially mammals, is critically important to conducting scientifically sound research with fishes. Disparities in life histories and mortality rates in fishes versus other vertebrates are critical in designing sustainable sampling levels in fish populations. The UFR Committee points out that (1) compared to mammalian populations, adult populations of many fish species persist despite very high natural mortality rates in juvenile stages by virtue of the fact that most species lay thousands or tens of thousands of eggs; (2) because of these mortality patterns, research on fishes, especially field research or research on early life stages, can involve, and often requires, much larger numbers of research subjects than does research on mammals; and (3) the animal handling and husbandry requirements for fishes are fundamentally different from those for

  9. Transgenic Fish

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fish into which foreign DNA is artificially introduced and integrated into their genome are called transgenic fish. Since the development of the first transgenic fish in 1985, techniques to produce transgenic fish have improved tremendously, resulting in the production of genetically modified (GM) ...

  10. Headaches prior to earthquakes

    NASA Astrophysics Data System (ADS)

    Morton, L. L.

    1988-06-01

    In two surveys of headaches it was noted that their incidence had increased significantly within 48 h prior to earthquakes from an incidence of 17% to 58% in the first survey using correlated samples and from 20.4% to 44% in the second survey using independent samples. It is suggested that an increase in positive air ions from rock compression may trigger head pain via a decrease in brain levels of the neurotransmitter serotonin. The findings are presented as preliminary, with the hope of generating further research efforts in areas more prone to earthquakes.

  11. Control of Culex pipiens fatigans(W) by the larvivorous fish Poecillia reticulata and by removal of debris from the breeding habitat.

    PubMed

    Phan-Urai, P; Nelson, M J; Phanthumachinda, B

    1976-03-01

    Twice weekly removal of floating debris from two polluted ponds in Bangkok resulted in 75% reduction of immature populations of C.p. fatigans for seven weeks. Subsequent introduction of the guppy Poecilia reticulata at 10 fish per m2 further reduced the aquatic population to 2% of the pretreatment level during 12 weeks. When debris removal was discontinued, partial recovery of the larval density was observed. When fish were introduced in a plot without prior debris removal, there was no reduction of the mosquito population, and when only part of the debris was removed from one plot, the reduction was immediate. PMID:1027109

  12. Fish can get diseases too

    USGS Publications Warehouse

    Thorsteinson, Lyman

    2005-01-01

    Infectious diseases are increasingly recognized as an important component of the ecology of fish in the wild. Many of the viral, bacterial, protozoan and fungal pathogens of fish that were initially discovered in captive fish have their origin among wild populations; however, the impact of disease among these free-ranging stocks has been difficult to study. At the WFRC, combinations of field and laboratory investigations, aided by the tools of molecular biology, have begun to provide information on the ecology of infectious diseases among natural populations of fish in both freshwater and marine ecosystems.

  13. [Speech by Oscar Julian Bardeci, director of the Centro Latinoamericano de Demografia (CELADE), at the Latinamerican Regional Meeting prior to the International Conference on Population in recognition of the Second Meeting on Population by the Committee of Upper-Level Government Experts (CEGAN), Havana, Cuba, November 16-19, 1983].

    PubMed

    Bardeci, O J

    1983-12-01

    This work examines the relationship between population growth and economic development in Latin America and assesses progress in the 10 years since the Bucharest World Population Conference. The Latin American population increased from about 159 million in 1950 to 275 million in 1970 and around 325 million in 1980. The rate of growth reached a maximum of 2.8%/year in the early 1970s and has now declined to about 2.3%/year. The regional growth rate is a product of population dynamics that differ greatly in individual countries. Crude birth rates declined in every country of Latin America between 1975-80, but still exceeded 40/1000 in 1980-85 in Bolivia, Ecuador, El Salvador, Haiti, Honduras, and Nicaragua. Current fertility is the result of the different trajectories of the demographic transition in different countries. While fertility in Argentina, Cuba, and Uruguay underwent a slow but sustained decline that began prior to 1960, other countries including Colombia, Costa Rica, Chile, and Venezuela began an accelerated fertility decline in the 1960s that diffused rapidly through all age and social groups. Other countries have still not entered a definite phase of fertility decline. Mortality rates have declined appreciably in Latin America in the past few decades although they remain high in some countries. After the end of World War II and until the mid-1970s, most countries of the region experienced rapid economic growth coupled with profound changes in the productive structure. The industrial labor force grew in almost all countries along with urbanization, the decline of agricultural employment, and the increase of the tertiary sector. These and other important economic advances through the mid-1970s occurred despite rapid population growth, and the beginning of the fertility decline coincided with slowing economic growth that saw negative rates in 1981-82. Various studies have shown that not all population sectors were incorporated in the process of economic

  14. Seasonal changes in community composition and trophic structure of fish populations of five salt marshes along the Essex coastline, United Kingdom

    NASA Astrophysics Data System (ADS)

    Green, Benjamin C.; Smith, David J.; Earley, Sarah E.; Hepburn, Leanne J.; Underwood, Graham J. C.

    2009-11-01

    European intertidal salt marshes are important nursery sites for juvenile fish and crustaceans. Due to the increasing threat of habitat loss, the seasonal changes of salt marsh fish communities need to be understood in order to appreciate the ecological and economic importance of the saltmarsh habitat. This study was the first in Great Britain to investigate the seasonal changes of salt marsh fish communities and the variation in community structure between closely located marsh habitats. Between February 2007 and March 2008, five marshes on three estuaries of the Essex coastline were sampled using flume nets to block off intertidal creeks at high tide. Fourteen fish species were caught. The community overall was dominated by three species that made up 91.6% of the total catch: the common goby Pomatoschistus microps (46.2% of the total catch), juvenile herring Clupea harengus (24.3%), and juvenile and larval sea bass Dicentrarchus labrax (21.2%). Cluster analysis demonstrated clear seasonal patterns, with some community structures unique to specific marshes or estuaries. The marsh fish community shifts from a highly diverse community during spring, to a community dominated by D. labrax and P. microps in autumn, and low diversity during winter months. Gravimetric stomach content analysis of fish community identified three main trophic guilds; macroinvertivores, planktivores and omnivores. The macroinvertivore feeding guild contained D. labrax and P. microps, the two most frequently occurring species. This investigation demonstrates the importance of British salt marshes as nursery habitats for commercial fish species.

  15. Impact of Prior Authorization on the Use and Costs of Lipid-Lowering Medications Among Michigan and Indiana Dual Enrollees in Medicaid and Medicare: Results of a Longitudinal, Population-Based Study

    PubMed Central

    Lu, Christine Y.; Law, Michael R.; Soumerai, Stephen B.; Graves, Amy Johnson; LeCates, Robert F.; Zhang, Fang; Ross-Degnan, Dennis; Adams, Alyce S.

    2014-01-01

    Background Some Medicaid programs have adopted prior-authorization (PA) policies that require prescribers to request approval from Medicaid before prescribing drugs not included on a preferred drug list. Objective This study examined the association between PA policies for lipid-lowering agents in Michigan and Indiana and the use and cost of this drug class among dual enrollees in Medicare and Medicaid. Methods Michigan and Indiana claims data from the Centers for Medicare and Medicaid Services were assessed. Michigan Medicaid instituted a PA requirement for several lipid-lowering medications in March 2002; Indiana implemented a PA policy for drugs in this class in September 2002. Although the PA policies affected some statins, they predominantly targeted second- line treatments, including bile acid sequestrants, fibrates, and niacins. Individuals aged ≥18 years who were continuously dually enrolled in both Medicare and Medicaid from July 2000 through September 2003 were included in this longitudinal, population-based study, which included a 20-month observation period before the implementation of PA in Michigan and a 12-month follow-up period after the Indiana PA policy was initiated. Interrupted time series analysis was used to examine changes in prescription rates and pharmacy costs for lipid-lowering drugs before and after policy implementation. Results A total of 38,684 dual enrollees in Michigan and 29,463 in Indiana were included. Slightly more than half of the cohort were female (Michigan, 53.3% [20,614/38,684]; Indiana, 56.3% [16,595/29,463]); nearly half were aged 45 to 64 years (Michigan, 43.7% [16,921/38,684]; Indiana, 45.2% [13,321/29,463]). Most subjects were white (Michigan, 77.4% [29,957/ 38,684]; Indiana: 84.9% [25,022/29,463]). The PA policy was associated with an immediate 58% reduction in prescriptions for nonpreferred medications in Michigan and a corresponding increase in prescriptions for preferred agents. However, the PA policy had no

  16. Fish Dishes.

    ERIC Educational Resources Information Center

    Derby, Marie

    2003-01-01

    Describes an art project that was inspired by Greek pottery, specifically dishes shaped as fish. Explains that fourth-grade students drew a fish shape that was later used to create their clay version of the fish. Discusses how the students examined the pottery to make decisions about color and design. (CMK)

  17. Population trends, bend use relative to available habitat and within-river-bend habitat use of eight indicator species of Missouri and Lower Kansas River benthic fishes: 15 years after baseline assessment

    USGS Publications Warehouse

    Wildhaber, Mark L.; Yang, Wen-Hsi; Arab, Ali

    2016-01-01

    A baseline assessment of the Missouri River fish community and species-specific habitat use patterns conducted from 1996 to 1998 provided the first comprehensive analysis of Missouri River benthic fish population trends and habitat use in the Missouri and Lower Yellowstone rivers, exclusive of reservoirs, and provided the foundation for the present Pallid Sturgeon Population Assessment Program (PSPAP). Data used in such studies are frequently zero inflated. To address this issue, the zero-inflated Poisson (ZIP) model was applied. This follow-up study is based on PSPAP data collected up to 15 years later along with new understanding of how habitat characteristics among and within bends affect habitat use of fish species targeted by PSPAP, including pallid sturgeon. This work demonstrated that a large-scale, large-river, PSPAP-type monitoring program can be an effective tool for assessing population trends and habitat usage of large-river fish species. Using multiple gears, PSPAP was effective in monitoring shovelnose and pallid sturgeons, sicklefin, shoal and sturgeon chubs, sand shiner, blue sucker and sauger. For all species, the relationship between environmental variables and relative abundance differed, somewhat, among river segments suggesting the importance of the overall conditions of Upper and Middle Missouri River and Lower Missouri and Kansas rivers on the habitat usage patterns exhibited. Shoal and sicklefin chubs exhibited many similar habitat usage patterns; blue sucker and shovelnose sturgeon also shared similar responses. For pallid sturgeon, the primary focus of PSPAP, relative abundance tended to increase in Upper and Middle Missouri River paralleling stocking efforts, whereas no evidence of an increasing relative abundance was found in the Lower Missouri River despite stocking.

  18. Unconsciously elicited perceptual prior

    PubMed Central

    Chang, Raymond; Baria, Alexis T.; Flounders, Matthew W.; He, Biyu J.

    2016-01-01

    Increasing evidence over the past decade suggests that vision is not simply a passive, feed-forward process in which cortical areas relay progressively more abstract information to those higher up in the visual hierarchy, but rather an inferential process with top-down processes actively guiding and shaping perception. However, one major question that persists is whether such processes can be influenced by unconsciously perceived stimuli. Recent psychophysics and neuroimaging studies have revealed that while consciously perceived stimuli elicit stronger responses in higher visual and frontoparietal areas than those that fail to reach conscious awareness, the latter can still drive high-level brain and behavioral responses. We investigated whether unconscious processing of a masked natural image could facilitate subsequent conscious recognition of its degraded counterpart (a black-and-white “Mooney” image) presented many seconds later. We found that this is indeed the case, suggesting that conscious vision may be influenced by priors established by unconscious processing of a fleeting image.

  19. Population-specific gene expression in the pathogenic nematode Hederodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of Glycine max.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Based on gene expression experiments, a single Glycine max (soybean) genotype (Peking) reacts differently to two different populations of Heterodera glycines (soybean cyst nematode) within the first twelve hours of infection. This suggested that H. glycines has population-specific gene expression si...

  20. Diagnosis of adults Xp11.2 translocation renal cell carcinoma by immunohistochemistry and FISH assays: clinicopathological data from ethnic Chinese population

    PubMed Central

    Qu, Yuanyuan; Gu, Chengyuan; Wang, Hongkai; Chang, Kun; Yang, Xiaoqun; Zhou, Xiaoyan; Dai, Bo; Zhu, Yao; Shi, Guohai; Zhang, Hailiang; Ye, Dingwei

    2016-01-01

    This study aimed to assess the utility of transcription factor E3 (TFE3) break-apart fluorescence in situ hybridization (FISH) assay in diagnosis of Xp11.2 translocation renal cell carcinoma (Xp11.2 RCC) and to compare the clinicopathological features between adult Xp11.2 RCC and non-Xp11.2 RCC. 76 pathologically suspected Xp11.2 RCCs were recruited from our institution. Both TFE3 immunohistochemistry (IHC) and TFE3 FISH assay were performed for the entire cohort. The progression-free survival (PFS) and overall survival (OS) curves were estimated using the Kaplan-Meier method. FISH analysis confirmed 30 Xp11.2 RCCs, including 28 cases with positive TFE3 immunostaining and 2 cases with negative immunostaining. The false-positive and false-negative rates were 6.7% (2/30) and 4.3% (2/46), respectively, for TFE3 IHC compared with FISH assay. Xp11.2 RCC was significantly associated with higher pathological stage and Fuhrman nuclear grade compared with non-Xp11.2 RCC (P < 0.05). The median PFS and OS for TFE3 FISH-positive group were 13.0 months (95% CI, 8.4–17.6 months) and 50.0 months (95% CI, 27.6–72.4 months), respectively, while the median PFS and OS had not been reached for TFE3 FISH-negative group. In conclusion, TFE3 break-apart FISH assay is a highly useful and standard diagnostic method for Xp11.2 RCC. Adult Xp11.2 RCC is clinically aggressive and often presents at advanced stage with poor prognosis. PMID:26880493

  1. Fishing effects on energy use by North Sea fishes

    NASA Astrophysics Data System (ADS)

    Jennings, Simon; van Hal, Ralf; Hiddink, Jan G.; Maxwell, Tracy A. D.

    Fishing affects patterns of energy use in fish populations, as demonstrated by changes in population energy consumption and the size and age when energy demands are greatest. We compare theoretical predictions and observed patterns of energy use (expressed as the primary production required to support fish production) by North Sea fish, based on simple and widely applicable theory that links life history parameters, fishing mortality ( F), trophic transfer efficiency and relationships between size and trophic level (as determined using nitrogen stable isotope analysis). For the demersal species that dominate total biomass, relationships between size and trophic level were quite consistent among years. There were large decreases in relative energy requirements of all exploited demersal populations except plaice Pleuronectes platessa during the last 3 to 4 decades. Relative energy requirements of plaice were more stable because smaller plaice, which now dominate the exploited population, feed at higher trophic levels than larger plaice. The sizes and ages when population energy demands were greatest fell with increasing fishing mortality and differences between the predicted ( F = 0) and observed ages at maximum energy demand were greater in larger species. Currently, the energy demands of most species peak early in life (1-3 years) and largely reflect patterns of recruitment, leading to a homogenisation of the trophodynamics of the fish community. The fate of energy that is no longer used by commercially exploited species is not clear, partly because of the infrequent and untargeted monitoring of species that are more resilient to fishing. However, we conducted a preliminary assessment of the energy demands of solenette Buglossidium luteum, a very abundant small flatfish in the central North Sea that has increased in abundance in recent years. The solenette's high abundance and resilience to fishing, suggests that it now requires 35% of primary production in part of

  2. Characterising reef fish populations and habitats within and outside the US Virgin Islands Coral Reef National Monument: A lesson in marine protected area design

    USGS Publications Warehouse

    Monaco, Mark E.; Friedlander, A.M.; Caldow, Chris; Christensen, J.D.; Rogers, C.; Beets, J.; Miller, J.; Boulon, Rafe

    2007-01-01

    Marine protected areas are an important tool for management of marine ecosystems. Despite their utility, ecological design criteria are often not considered or feasible to implement when establishing protected areas. In 2001, the Virgin Islands Coral Reef National Monument (VICRNM) in St John, US Virgin Islands was established by Executive Order. The VICRNM prohibits almost all extractive uses. Surveys of habitat and fishes inside and outside of the VICRNM were conducted in 2002-2004. Areas outside the VICRNM had significantly more hard corals, greater habitat complexity, and greater richness, abundance and biomass of reef fishes than areas within the VICRNM. The administrative process used to delineate the boundaries of the VICRNM did not include a robust ecological characterisation of the area. Because of reduced habitat complexity within the VICRNM, the enhancement of the marine ecosystem may not be fully realised or increases in economically important reef fishes may take longer to detect. ?? 2007 The Authors. Journal compilation ?? 2007 Blackwell Publishing Ltd.

  3. Fish flavor.

    PubMed

    Kawai, T

    1996-02-01

    This article reviews features of flavor in three groups of fishes and summarizes them as follows: (1) fresh saltwater fish are nearly odorless because they contain a small quantity of volatiles; (2 freshwater fish give off pyrrolidine and earthy-odor compounds, which are responsible for their maturity and surrounding water pollution, and (3) euryhaline fish exhibit a variety of unsaturated carbonyls and alcohols derived from enzymatic and nonenzymatic oxidation of polyunsaturated fatty acids (PAs). These features are discussed, as are the effects of different enzymatic activities on PA oxidation and the effects of pH on mechanisms of formation of the volatiles. The monotonous volatile constitution of saltwater fish is likely caused by an unknown antioxidation system restraining the fish from oxidizing. The variety of constitution of euryhaline fish, especially that of anadromous fish under spawning conditions, could result from the loss of that system. The thermal environments of heated foods are also reviewed. The basic environment of fish, which allows the formation of flavor compounds, is discussed to confirm the volatiles found in unheated fish. PMID:8744606

  4. Empirical assessment of fish introductions in a subtropical wetland: An evaluation of contrasting views

    USGS Publications Warehouse

    Trexler, J.C.; Loftus, W.F.; Jordan, F.; Lorenz, J.J.; Chick, J.H.; Kobza, Robert M.

    2000-01-01

    We summarized data from eight quantitative fish surveys conducted in southern Florida to evaluate the distribution and relative abundance of introduced fishes across a variety of habitats. These surveys encompassed marsh and canal habitats throughout most of the Everglades region, including the mangrove fringe of Florida Bay. Two studies provided systematically collected density information over a 20-year period, and documented the first local appearance of four introduced fishes based on their repeated absence in prior surveys. Those species displayed a pattern of rapid population growth followed by decline, then persistence at lower densities. Estuarine areas in the southern Everglades, characterized by natural tidal creeks surrounded by mangrove-dominated marshes, and canals held the largest introduced-fish populations. Introduced fishes were also common, at times exceeding 50% of the fish community, in solution holes that serve as dry-season refuges in short-hydroperiod rockland habitats of the eastern Everglades. Wet prairies and alligator ponds distant from canals generally held few individuals of introduced fishes. These patterns suggest that the introduced fishes in southern Florida at present may not be well-adapted to persist in freshwater marshes of the Everglades, possibly because of an interaction of periodic cold-temperature stress and hydrologic fluctuation. Our analyses indicated low densities of these fishes in central or northern Everglades wet-prairie communities, and, in the absence of experimental data, little evidence of biotic effects in this spatially extensive habitat. There is no guarantee that this condition will be maintained, especially under the cumulative effects of future invasions or environmental change.

  5. Design complexity in termite-fishing tools of chimpanzees (Pan troglodytes).

    PubMed

    Sanz, Crickette; Call, Josep; Morgan, David

    2009-06-23

    Adopting the approach taken with New Caledonian crows (Corvus moneduloides), we present evidence of design complexity in one of the termite-fishing tools of chimpanzees (Pan troglodytes) in the Goualougo Triangle, Republic of Congo. Prior to termite fishing, chimpanzees applied a set of deliberate, distinguishable actions to modify herb stems to fashion a brush-tipped probe, which is different from the form of fishing tools used by chimpanzees in East and West Africa. This means that 'brush-tipped fishing probes', unlike 'brush sticks', are not a by-product of use but a deliberate design feature absent in other chimpanzee populations. The specialized modifications to prepare the tool for termite fishing, measures taken to repair non-functional brushes and appropriate orientation of the modified end suggest that these wild chimpanzees are attentive to tool modifications. We also conducted experimental trials that showed that a brush-tipped probe is more effective in gathering insects than an unmodified fishing probe. Based on these findings, we suggest that chimpanzees in the Congo Basin have developed an improved fishing probe design. PMID:19324641

  6. Investigating global change and fish biology with fish otolith radiocarbon

    NASA Astrophysics Data System (ADS)

    Kalish, John M.

    1994-06-01

    Fish otoliths, calcium carbonate gravity and auditory receptors in the membranous labyrinths of teleost fish, can provide radiocarbon data that are valuable to a wide range of disciplines. For example, the first pre- and post-bomb time series of radiocarbon levels from northern or southern hemisphere temperate oceans was obtained by carrying out accelerator mass spectrometry analyses on selected regions of fish otoliths. These data can provide powerful constraints on both carbon cycle models and ocean general circulation models. Because fish otoliths can serve as a proxy of radiocarbon in seawater dissolved inorganic carbon in all oceans and at most depths, there is considerable scope for further investigations of otolith radiocarbon in relation to both oceanography and global change. In addition to applications relevant to global change, fish otoliths are also valuable sources of information on the age, growth, and ecology of fishes, with age being among the most important parameters in population modelling and fisheries management. Use of the bomb radiocarbon chronometer to validate fish age determination methods offers considerable advantages over traditional forms of age validation and promises to become a standard tool in fish biology and fisheries management. Radiocarbon data from otoliths can also provide valuable information on the ecology of fishes and has already provided surprising information relevant to the ecology of some deep-sea fishes.

  7. The Effects of Land Use and Climate Change on Fish Populations -- Geomorphic Inputs to a Model for the Maryland Piedmont, U.S.A.

    NASA Astrophysics Data System (ADS)

    Pizzuto, J. E.; Glenn, M.; Palmer, M.; Nelson, K.

    2006-05-01

    To provide input parameters to a model of fish population dynamics, model simulations are used to assess the combined influence of land use and climate changes on gravel streambeds. Two scenarios are defined to illustrate the potential effects of changing land use and climate. One scenario, referred to as the Managed Growth/No Climate Change (MGNCC) Scenario, represents minimum effects of land use and climate change, while the other scenario, referred to as the Urban Sprawl/ Climate Change (USCC) Scenario, represents more extensive effects of land use and climate changes. We apply our scenarios to a 30 m reach at the outlet of the Northwest Branch of the Anacostia River, a gravel-bedded river with a 54.6 km2 drainage basin located in the State of Maryland, just northwest of Washington, D.C., U.S.A. To assess changing climates, we use the Hadley2 GCM. The GCM is applied to 1960 -" 1969 for the MGNCC scenario and to 2090-2099 for the USCC scenario. The MGNCC scenario is characterized by 10 % impervious surfaces, 20 % forested land use, no construction, and a mean annual temperature of 17.3 degrees Celsius. The USCC scenario is characterized by 20 % impervious surfaces, 2 % forested land use, 2 % of the watershed under construction, and a mean annual temperature of 21.5 degrees Celsius. Output from the GCM is first "downscaled" to account for the small size of the drainage basin, and then it is fed to a continuous hydrological model, which is used to compute ten years of daily discharges for each scenario. A sediment transport model, combined with empirical formulae to specify upstream sediment inputs, is then used to compute changes to the stream bed. The sediment transport model computes changes in grain size distribution, bedload and suspended material discharge, suspended sediment concentration (turbidity), the areal fraction of the bed in motion, bed elevation and slope, and the mud (silt and clay) content of the active layer. In addition to these variables, the

  8. 32 CFR 770.3 - Fishing regulations.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... are permitted to fish in the areas designated by the Annual Fishing Regulations on Marine Corps Base... prohibitions and requirements are in effect at Marine Corps Base, Quantico, VA. (1) No trout lines are... obtained from the Natural Resources and Environmental Affairs Branch, Building 5-9 prior to use of...

  9. 32 CFR 770.3 - Fishing regulations.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... are permitted to fish in the areas designated by the Annual Fishing Regulations on Marine Corps Base... prohibitions and requirements are in effect at Marine Corps Base, Quantico, VA. (1) No trout lines are... obtained from the Natural Resources and Environmental Affairs Branch, Building 5-9 prior to use of...

  10. PRIOR GENETIC CORRELATIONS AND NON-MEASURED TRAITS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Current international genetic evaluations are based on how related country populations are genetically (across-country genetic correlations). Those correlations may be influenced strongly by prior expectations that were not based on sound scientific principles. Objective methods to predict prior cor...

  11. Texture Fish

    ERIC Educational Resources Information Center

    Stone, Julie

    2007-01-01

    In an effort to provide an opportunity for her first graders to explore texture through an engaging subject, the author developed a three-part lesson that features fish in a mixed-media artwork: (1) Exploring Textured Paint; (2) Creating the Fish; and (3) Role Playing. In this lesson, students effectively explore texture through painting, drawing,…

  12. Forecasting Tools Point to Fishing Hotspots

    NASA Technical Reports Server (NTRS)

    2009-01-01

    Private weather forecaster WorldWinds Inc. of Slidell, Louisiana has employed satellite-gathered oceanic data from Marshall Space Flight Center to create a service that is every fishing enthusiast s dream. The company's FishBytes system uses information about sea surface temperature and chlorophyll levels to forecast favorable conditions for certain fish populations. Transmitting the data to satellite radio subscribers, FishBytes provides maps that guide anglers to the areas they are most likely to make their favorite catch.

  13. Kalispel Non-Native Fish Suppression Project 2007 Annual Report.

    SciTech Connect

    Wingert, Michele; Andersen, Todd

    2008-11-18

    Non-native salmonids are impacting native salmonid populations throughout the Pend Oreille Subbasin. Competition, hybridization, and predation by non-native fish have been identified as primary factors in the decline of some native bull trout (Salvelinus confluentus) and westslope cutthroat trout (Oncorhynchus clarki lewisi) populations. In 2007, the Kalispel Natural Resource Department (KNRD) initiated the Kalispel Nonnative Fish Suppression Project. The goal of this project is to implement actions to suppress or eradicate non-native fish in areas where native populations are declining or have been extirpated. These projects have previously been identified as critical to recovering native bull trout and westslope cutthroat trout (WCT). Lower Graham Creek was invaded by non-native rainbow (Oncorhynchus mykiss) and brook trout (Salvelinus fontinalis) after a small dam failed in 1991. By 2003, no genetically pure WCT remained in the lower 700 m of Graham Creek. Further invasion upstream is currently precluded by a relatively short section of steep, cascade-pool stepped channel section that will likely be breached in the near future. In 2008, a fish management structure (barrier) was constructed at the mouth of Graham Creek to preclude further invasion of non-native fish into Graham Creek. The construction of the barrier was preceded by intensive electrofishing in the lower 700 m to remove and relocate all captured fish. Westslope cutthroat trout have recently been extirpated in Cee Cee Ah Creek due to displacement by brook trout. We propose treating Cee Cee Ah Creek with a piscicide to eradicate brook trout. Once eradication is complete, cutthroat trout will be translocated from nearby watersheds. In 2004, the Washington Department of Fish and Wildlife (WDFW) proposed an antimycin treatment within the subbasin; the project encountered significant public opposition and was eventually abandoned. However, over the course of planning this 2004 project, little public

  14. The Importance of Prior Knowledge.

    ERIC Educational Resources Information Center

    Cleary, Linda Miller

    1989-01-01

    Recounts a college English teacher's experience of reading and rereading Noam Chomsky, building up a greater store of prior knowledge. Argues that Frank Smith provides a theory for the importance of prior knowledge and Chomsky's work provided a personal example with which to interpret and integrate that theory. (RS)

  15. Menarche: Prior Knowledge and Experience.

    ERIC Educational Resources Information Center

    Skandhan, K. P.; And Others

    1988-01-01

    Recorded menstruation information among 305 young women in India, assessing the differences between those who did and did not have knowledge of menstruation prior to menarche. Those with prior knowledge considered menarche to be a normal physiological function and had a higher rate of regularity, lower rate of dysmenorrhea, and earlier onset of…

  16. Mercury concentrations in Maine sport fishes

    SciTech Connect

    Stafford, C.P.; Haines, T.A.

    1997-01-01

    To assess mercury contamination of fish in Maine, fish were collected from 120 randomly selected lakes. The collection goal for each lake was five fish of the single most common sport fish species within the size range commonly harvested by anglers. Skinless, boneless fillets of fish from each lake were composited, homogenized, and analyzed for total mercury. The two most abundant species, brook trout Salvelinus fontinalis and smallmouth bass Micropterus dolomieu, were also analyzed individually. The composite fish analyses indicate high concentrations of mercury, particularly in large and long-lived nonsalmonid species. Chain pickerel Esox niger, smallmouth bass, largemouth bass Micropterus salmoides, and white perch Morone americana had the highest average mercury concentrations, and brook trout and yellow perch Perca flavescens had the lowest. The mean species composite mercury concentration was positively correlated with a factor incorporating the average size and age of the fish. Lakes containing fish with high mercury concentrations were not clustered near known industrial or population centers but were commonest in the area within 150 km of the seacoast, reflecting the geographical distribution of species that contained higher mercury concentrations. Stocked and wild brook trout were not different in length or weight, but wild fish were older and had higher mercury concentrations. Fish populations maintained by frequent introductions of hatchery-produced fish and subject to high angler exploitation rates may consist of younger fish with lower exposure to environmental mercury and thus contain lower concentrations than wild populations.

  17. Kalispel Resident Fish Project : Annual Report, 2002.

    SciTech Connect

    Andersen, Todd; Olson, Jason

    2003-03-01

    In 2002 the Kalispel Natural Resource Department (KNRD) continued monitoring enhancement projects (implemented from 1996 to 1998) for bull trout (Salvelinus confluentus), westslope cutthroat (Oncorhynchus clarki lewisi) and largemouth bass (Micropterus salmoides). Additional baseline fish population and habitat assessments were conducted, in 2002, in tributaries to the Pend Oreille River. Further habitat and fish population enhancement projects were also implemented in 2002.

  18. Kalispel Resident Fish Project Annual Report, 2003.

    SciTech Connect

    Olson, Jason; Andersen, Todd

    2004-04-01

    In 2003 the Kalispel Natural Resource Department (KNRD) continued monitoring enhancement projects (implemented from 1996 to 1998) for bull trout (Salvelinus confluentus), westslope cutthroat (Oncorhynchus clarki lewisi) and largemouth bass (Micropterus salmoides). Additional baseline fish population and habitat assessments were conducted, in 2003, in tributaries to the Pend Oreille River. Further habitat and fish population enhancement projects were also implemented.

  19. Measuring marine fish biodiversity: temporal changes in abundance, life history and demography

    PubMed Central

    Hutchings, Jeffrey A; Baum, Julia K

    2005-01-01

    Patterns in marine fish biodiversity can be assessed by quantifying temporal variation in rate of population change, abundance, life history and demography concomitant with long-term reductions in abundance. Based on data for 177 populations (62 species) from four north-temperate oceanic regions (Northeast Atlantic and Pacific, Northwest Atlantic, North mid-Atlantic), 81% of the populations in decline prior to 1992 experienced reductions in their rate of loss thereafter; species whose rate of population decline accelerated after 1992 were predominantly top predators such as Atlantic cod (Gadus morhua), sole (Solea solea) and pelagic sharks. Combining population data across regions and species, marine fish have declined 35% since 1978 and are currently less than 70% of recorded maxima; demersal species are generally at historic lows, pelagic species are generally stable or increasing in abundance. Declines by demersal species have been associated with substantive increases in pelagic species, a pattern consistent with the hypothesis that increases in the latter may be attributable to reduced predation mortality. There is a need to determine the consequences to population growth effected by the reductions in age (21%) and size (13%) at maturity and in mean age (5%) and size (18%) of spawners, concomitant with population decline. We conclude that reductions in the rate of population decline, in the absence of targets for population increase, will be insufficient to effect a recovery of marine fish biodiversity, and that great care must be exercised when interpreting multi-species patterns in abundance. Of fundamental importance is the need to explain the geographical, species-specific and habitat biases that pervade patterns of marine fish recovery and biodiversity. PMID:15814348

  20. Marginally specified priors for non-parametric Bayesian estimation

    PubMed Central

    Kessler, David C.; Hoff, Peter D.; Dunson, David B.

    2014-01-01

    Summary Prior specification for non-parametric Bayesian inference involves the difficult task of quantifying prior knowledge about a parameter of high, often infinite, dimension. A statistician is unlikely to have informed opinions about all aspects of such a parameter but will have real information about functionals of the parameter, such as the population mean or variance. The paper proposes a new framework for non-parametric Bayes inference in which the prior distribution for a possibly infinite dimensional parameter is decomposed into two parts: an informative prior on a finite set of functionals, and a non-parametric conditional prior for the parameter given the functionals. Such priors can be easily constructed from standard non-parametric prior distributions in common use and inherit the large support of the standard priors on which they are based. Additionally, posterior approximations under these informative priors can generally be made via minor adjustments to existing Markov chain approximation algorithms for standard non-parametric prior distributions. We illustrate the use of such priors in the context of multivariate density estimation using Dirichlet process mixture models, and in the modelling of high dimensional sparse contingency tables. PMID:25663813

  1. Fishing Forecasts

    NASA Technical Reports Server (NTRS)

    1988-01-01

    ROFFS stands for Roffer's Ocean Fishing Forecasting Service, Inc. Roffer combines satellite and computer technology with oceanographic information from several sources to produce frequently updated charts sometimes as often as 30 times a day showing clues to the location of marlin, sailfish, tuna, swordfish and a variety of other types. Also provides customized forecasts for racing boats and the shipping industry along with seasonal forecasts that allow the marine industry to formulate fishing strategies based on foreknowledge of the arrival and departure times of different fish. Roffs service exemplifies the potential for benefits to marine industries from satellite observations. Most notable results are reduced search time and substantial fuel savings.

  2. Modeling unobserved sources of heterogeneity in animal abundance using a Dirichlet process prior

    USGS Publications Warehouse

    Dorazio, R.M.; Mukherjee, B.; Zhang, L.; Ghosh, M.; Jelks, H.L.; Jordan, F.

    2008-01-01

    In surveys of natural populations of animals, a sampling protocol is often spatially replicated to collect a representative sample of the population. In these surveys, differences in abundance of animals among sample locations may induce spatial heterogeneity in the counts associated with a particular sampling protocol. For some species, the sources of heterogeneity in abundance may be unknown or unmeasurable, leading one to specify the variation in abundance among sample locations stochastically. However, choosing a parametric model for the distribution of unmeasured heterogeneity is potentially subject to error and can have profound effects on predictions of abundance at unsampled locations. In this article, we develop an alternative approach wherein a Dirichlet process prior is assumed for the distribution of latent abundances. This approach allows for uncertainty in model specification and for natural clustering in the distribution of abundances in a data-adaptive way. We apply this approach in an analysis of counts based on removal samples of an endangered fish species, the Okaloosa darter. Results of our data analysis and simulation studies suggest that our implementation of the Dirichlet process prior has several attractive features not shared by conventional, fully parametric alternatives. ?? 2008, The International Biometric Society.

  3. Broad-scale sampling of primary freshwater fish populations reveals the role of intrinsic traits, inter-basin connectivity, drainage area and latitude on shaping contemporary patterns of genetic diversity

    PubMed Central

    Robalo, Joana I.; Pereira, Ana M.; Branco, Paulo; Santos, José Maria; Ferreira, Maria Teresa; Sousa, Mónica; Doadrio, Ignacio

    2016-01-01

    Background. Worldwide predictions suggest that up to 75% of the freshwater fish species occurring in rivers with reduced discharge could be extinct by 2070 due to the combined effect of climate change and water abstraction. The Mediterranean region is considered to be a hotspot of freshwater fish diversity but also one of the regions where the effects of climate change will be more severe. Iberian cyprinids are currently highly endangered, with over 68% of the species raising some level of conservation concern. Methods. During the FISHATLAS project, the Portuguese hydrographical network was extensively covered (all the 34 river basins and 47 sub-basins) in order to contribute with valuable data on the genetic diversity distribution patterns of native cyprinid species. A total of 188 populations belonging to 16 cyprinid species of Squalius, Luciobarbus, Achondrostoma, Iberochondrostoma, Anaecypris and Pseudochondrostoma were characterized, for a total of 3,678 cytochrome b gene sequences. Results. When the genetic diversity of these populations was mapped, it highlighted differences among populations from the same species and between species with identical distribution areas. Factors shaping the contemporary patterns of genetic diversity were explored and the results revealed the role of latitude, inter-basin connectivity, migratory behaviour, species maximum size, species range and other species intrinsic traits in determining the genetic diversity of sampled populations. Contrastingly, drainage area and hydrological regime (permanent vs. temporary) seem to have no significant effect on genetic diversity. Species intrinsic traits, maximum size attained, inter-basin connectivity and latitude explained over 30% of the haplotype diversity variance and, generally, the levels of diversity were significantly higher for smaller sized species, from connected and southerly river basins. Discussion. Targeting multiple co-distributed species of primary freshwater fish allowed

  4. Broad-scale sampling of primary freshwater fish populations reveals the role of intrinsic traits, inter-basin connectivity, drainage area and latitude on shaping contemporary patterns of genetic diversity.

    PubMed

    Sousa-Santos, Carla; Robalo, Joana I; Pereira, Ana M; Branco, Paulo; Santos, José Maria; Ferreira, Maria Teresa; Sousa, Mónica; Doadrio, Ignacio

    2016-01-01

    Background. Worldwide predictions suggest that up to 75% of the freshwater fish species occurring in rivers with reduced discharge could be extinct by 2070 due to the combined effect of climate change and water abstraction. The Mediterranean region is considered to be a hotspot of freshwater fish diversity but also one of the regions where the effects of climate change will be more severe. Iberian cyprinids are currently highly endangered, with over 68% of the species raising some level of conservation concern. Methods. During the FISHATLAS project, the Portuguese hydrographical network was extensively covered (all the 34 river basins and 47 sub-basins) in order to contribute with valuable data on the genetic diversity distribution patterns of native cyprinid species. A total of 188 populations belonging to 16 cyprinid species of Squalius, Luciobarbus, Achondrostoma, Iberochondrostoma, Anaecypris and Pseudochondrostoma were characterized, for a total of 3,678 cytochrome b gene sequences. Results. When the genetic diversity of these populations was mapped, it highlighted differences among populations from the same species and between species with identical distribution areas. Factors shaping the contemporary patterns of genetic diversity were explored and the results revealed the role of latitude, inter-basin connectivity, migratory behaviour, species maximum size, species range and other species intrinsic traits in determining the genetic diversity of sampled populations. Contrastingly, drainage area and hydrological regime (permanent vs. temporary) seem to have no significant effect on genetic diversity. Species intrinsic traits, maximum size attained, inter-basin connectivity and latitude explained over 30% of the haplotype diversity variance and, generally, the levels of diversity were significantly higher for smaller sized species, from connected and southerly river basins. Discussion. Targeting multiple co-distributed species of primary freshwater fish allowed

  5. Immunity to fish rhabdoviruses

    USGS Publications Warehouse

    Purcell, Maureen K.; Laing, Kerry J.; Winton, James R.

    2012-01-01

    Members of the family Rhabdoviridae are single-stranded RNA viruses and globally important pathogens of wild and cultured fish and thus relatively well studied in their respective hosts or other model systems. Here, we review the protective immune mechanisms that fish mount in response to rhabdovirus infections. Teleost fish possess the principal components of innate and adaptive immunity found in other vertebrates. Neutralizing antibodies are critical for long-term protection from fish rhabdoviruses, but several studies also indicate a role for cell-mediated immunity. Survival of acute rhabdoviral infection is also dependent on innate immunity, particularly the interferon (IFN) system that is rapidly induced in response to infection. Paradoxically, rhabdoviruses are sensitive to the effects of IFN but virulent rhabdoviruses can continue to replicate owing to the abilities of the matrix (M) protein to mediate host-cell shutoff and the non-virion (NV) protein to subvert programmed cell death and suppress functional IFN. While many basic features of the fish immune response to rhabdovirus infections are becoming better understood, much less is known about how factors in the environment affect the ecology of rhabdovirus infections in natural populations of aquatic animals.

  6. Immunity to Fish Rhabdoviruses

    PubMed Central

    Purcell, Maureen K.; Laing, Kerry J.; Winton, James R.

    2012-01-01

    Members of the family Rhabdoviridae are single-stranded RNA viruses and globally important pathogens of wild and cultured fish and thus relatively well studied in their respective hosts or other model systems. Here, we review the protective immune mechanisms that fish mount in response to rhabdovirus infections. Teleost fish possess the principal components of innate and adaptive immunity found in other vertebrates. Neutralizing antibodies are critical for long-term protection from fish rhabdoviruses, but several studies also indicate a role for cell-mediated immunity. Survival of acute rhabdoviral infection is also dependent on innate immunity, particularly the interferon (IFN) system that is rapidly induced in response to infection. Paradoxically, rhabdoviruses are sensitive to the effects of IFN but virulent rhabdoviruses can continue to replicate owing to the abilities of the matrix (M) protein to mediate host-cell shutoff and the non‑virion (NV) protein to subvert programmed cell death and suppress functional IFN. While many basic features of the fish immune response to rhabdovirus infections are becoming better understood, much less is known about how factors in the environment affect the ecology of rhabdovirus infections in natural populations of aquatic animals. PMID:22355456

  7. Fish Facts

    MedlinePlus

    ... not eat any fish because they worry about mercury in seafood. Mercury is a metal that, at high levels, can ... many types of seafood have little or no mercury at all. So your risk of mercury exposure ...

  8. Designer Fish.

    ERIC Educational Resources Information Center

    Hall, William R., Jr.

    1990-01-01

    Described is an activity in which students are asked to design a fish that would survive in a natural system. A project to computerize the activity is discussed. The development of this artificial intelligence software is detailed. (CW)

  9. Fish Allergy

    MedlinePlus

    ... specific fish used on the label. Read all product labels carefully before purchasing and consuming any item. Ingredients ... Getting Started Newly Diagnosed Emergency Care Plan Food Labels Mislabeled Products Tips for Managing Food Allergies Resources For... Most ...

  10. Application of 16s rDNA and cytochrome b ribosomal markers in studies of lineage and fish populations structure of aquatic species.

    PubMed

    Baharum, Syarul Nataqain; Nurdalila, A'wani Aziz

    2012-05-01

    The most economically important form of aquaculture is fish farming, which is an industry that accounts for an ever increasing share of world fishery production. Molecular markers can be used to enhance the productivity of the aquaculture and fish industries to meet the increasing demand. Molecular markers can be identified via a DNA test regardless of the developmental stage, age or environmental challenges experienced by the organism. The application of 16s and cytochrome b markers has enabled rapid progress in investigations of genetic variability and inbreeding, parentage assignments, species and strain identification and the construction of high resolution genetic linkage maps for aquaculture fisheries. In this review, the advantages of principles and potential power tools of 16s and cytochrome b markers are discussed. Main findings in term of trend, aspects and debates on the reviewed issue made from the model of aquatic species for the benefit of aquaculture genomics and aquaculture genetics research are discussed. The concepts in this review are illustrated with various research examples and results that relate theory to reality and provide a strong review of the current status of these biotechnology topics. PMID:22167328

  11. Influence of the water quality improvement on fish population in the Seine River (Paris, France) over the 1990-2013 period.

    PubMed

    Azimi, Sam; Rocher, Vincent

    2016-01-15

    Over the past 20 years, rules concerning wastewater treatment and quality of water discharged into the environment have changed considerably. Huge investments have been made in Paris conurbation to improve waste water treatment processes in accordance with the European Water Framework Directive. The interdepartmental association for sewage disposal in Paris conurbation (SIAAP) carried out a monitoring of both fish assemblages and water quality in the Seine River around the Paris conurbation (France) since the early 90's. The main goal of this study was to estimate the influence of the water quality improvement on fish. On one hand, the study confirmed the improvement of the water quality (dissolved oxygen, ammonia nitrogen, organic matter) in the Seine River, mostly focused downstream of Paris conurbation. On the other hand, an increase of the number of species occurred from 1990 (14) to 2013 (21). Moreover, changes in the river Seine assemblages happened over that 23-year period with emergence of sensitive species (ruffe, scalpin and pike-perch). The improvement of the water quality was also reported with respect to the Index of Biotic Integrity (IBI). However, no variation of pollutant concentrations in roach, eel and chub muscles has been observed. An exceedance of the environmental quality standards have even been reported all over this period as regards mercury and organochlorine. PMID:26562342

  12. Fish consumption and risk of subclinical brain abnormalities on MRI in older adults

    PubMed Central

    Virtanen, J K.; Siscovick, D S.; Longstreth, W T.; Kuller, L H.; Mozaffarian, D

    2008-01-01

    Objective: To investigate the association between fish consumption and subclinical brain abnormalities. Methods: In the population-based Cardiovascular Health Study, 3,660 participants age ≥65 underwent an MRI scan in 1992–1994. Five years later, 2,313 were scanned. Neuroradiologists assessed MRI scans in a standardized and blinded manner. Food frequency questionnaires were used to assess dietary intakes. Participants with known cerebrovascular disease were excluded from the analyses. Results: After adjustment for multiple risk factors, the risk of having one or more prevalent subclinical infarcts was lower among those consuming tuna/other fish ≥3 times/week, compared to <1/month (relative risk 0.74, 95% CI = 0.54–1.01, p = 0.06, p trend = 0.03). Tuna/other fish consumption was also associated with trends toward lower incidence of subclinical infarcts. Additionally, tuna/other fish intake was associated with better white matter grade, but not with sulcal and ventricular grades, markers of brain atrophy. No significant associations were found between fried fish consumption and any subclinical brain abnormalities. Conclusions: Among older adults, modest consumption of tuna/other fish, but not fried fish, was associated with lower prevalence of subclinical infarcts and white matter abnormalities on MRI examinations. Our results add to prior evidence that suggest that dietary intake of fish with higher eicosapentaenoic acid and docosahexaenoic acid content, and not fried fish intake, may have clinically important health benefits. GLOSSARY ARR = absolute risk reduction; BMI = body mass index; CHD = coronary heart disease; CHS = Cardiovascular Health Study; DHA = docosahexaenoic acid; EPA = eicosapentaenoic acid; FFQ = food frequency questionnaire; HDL-C = high-density lipoprotein cholesterol; LDL-C = low-density lipoprotein cholesterol; PUFA = polyunsaturated fatty acid; RR = relative risk. PMID:18678827

  13. To what extent do human-altered landscapes retain population connectivity? Historical changes in gene flow of wetland fish Pungitius pungitius.

    PubMed

    Ishiyama, N; Sueyoshi, M; Nakamura, F

    2015-07-01

    Understanding how human-altered landscapes affect population connectivity is valuable for conservation planning. Natural connectivity among wetlands, which is maintained by floods, is disappearing owing to farmland expansion. Using genetic data, we assessed historical changes in the population connectivity of the ninespine stickleback within a human-altered wetland system. We predicted that: (i) the contemporary gene flow maintained by the artificial watercourse network may be restricted to a smaller spatial scale compared with the gene flow preceding alteration, and (ii) the contemporary gene flow is dominated by the downstream direction owing to the construction of low-head barriers. We evaluated the potential source population in both timescales. Seventeen studied populations were grouped into four genetically different clusters, and we estimated the migration rates among these clusters. Contemporary migration was restricted to between neighbouring clusters, although a directional change was not detected. Furthermore, we consistently found the same potential source cluster, from past to present, characterized by large amounts of remnant habitats connected by artificial watercourses. These findings highlight that: (i) artificial connectivity can sustain the short-distance connectivity of the ninespine stickleback, which contributes to maintaining the potential source populations; however, (ii) population connectivity throughout the landscape has been prevented by agricultural developments. PMID:26587264

  14. To what extent do human-altered landscapes retain population connectivity? Historical changes in gene flow of wetland fish Pungitius pungitius

    PubMed Central

    Ishiyama, N.; Sueyoshi, M.; Nakamura, F.

    2015-01-01

    Understanding how human-altered landscapes affect population connectivity is valuable for conservation planning. Natural connectivity among wetlands, which is maintained by floods, is disappearing owing to farmland expansion. Using genetic data, we assessed historical changes in the population connectivity of the ninespine stickleback within a human-altered wetland system. We predicted that: (i) the contemporary gene flow maintained by the artificial watercourse network may be restricted to a smaller spatial scale compared with the gene flow preceding alteration, and (ii) the contemporary gene flow is dominated by the downstream direction owing to the construction of low-head barriers. We evaluated the potential source population in both timescales. Seventeen studied populations were grouped into four genetically different clusters, and we estimated the migration rates among these clusters. Contemporary migration was restricted to between neighbouring clusters, although a directional change was not detected. Furthermore, we consistently found the same potential source cluster, from past to present, characterized by large amounts of remnant habitats connected by artificial watercourses. These findings highlight that: (i) artificial connectivity can sustain the short-distance connectivity of the ninespine stickleback, which contributes to maintaining the potential source populations; however, (ii) population connectivity throughout the landscape has been prevented by agricultural developments. PMID:26587264

  15. Gas-liquid chromatography-tandem mass spectrometry methodology for the quantitation of estrogenic contaminants in bile of fish exposed to wastewater treatment works effluents and from wild populations.

    PubMed

    Fenlon, Kate A; Johnson, Andrew C; Tyler, Charles R; Hill, Elizabeth M

    2010-01-01

    Fish can be exposed to a complex mixture of chemical contaminants arising from the exposure to wastewater treatment works (WwTWs) effluents. Some of these contaminants are estrogenic and have been associated with feminisation of male fish and the presence of populations containing intersex individuals. However the detection of trace levels (ng/L) of estrogenic chemicals surface waters can be difficult and does not give information on the exposure of aquatic organisms to these contaminants. In this study we assessed whether the analysis of estrogenic substances that bioconcentrate in fish bile can be used to detect the exposure of fish to feminising contaminants in receiving waters and effluents, and thus facilitate their monitoring of these substances in aquatic environments. Estrogenic metabolites in bile were deconjugated using enzymatic hydrolysis and partially purified by solid phase extraction. Steroidal and xenoestrogens were derivatized to their trimethylsilyl ethers and quantified by gas-liquid chromatography-mass spectrometry (GC-MS/MS) using multiple reaction monitoring. The method was validated using spiked bile samples from immature female rainbow trout (Oncorhynchus mykiss) as well as bile from sexually mature roach (Rutilus rutilus) that had been exposed to either tap water or an undiluted estrogenic effluent for 10 days or captured from a river site downstream of a WwTWs effluent discharge. The mean recovery of target analytes from spiked bile was between 86 and 99% and the limit of detection was between 0.1 and 0.7ng/mL bile for bisphenol A (BPA), 17beta-estradiol (E2), estrone (E1) and 17alpha-ethinylestradiol (EE2), and 11, 60 and 327ng/mL bile for branched nonyl chain isomeric mixtures of 4-nonylphenolethoxylate (NP1EO), 4-nonylphenol (NP) and 4-nonylphenoldiethoxylate (NP2EO), respectively. All target analytes were detected in bile from roach exposed directly to a WwTWs effluent, with concentrations between 6-13microg/mL bile for NP, 18-21microg

  16. Artificial mouth opening fosters anoxic conditions that kill small estuarine fish

    NASA Astrophysics Data System (ADS)

    Becker, Alistair; Laurenson, Laurie J. B.; Bishop, Kylie

    2009-05-01

    Fish kills are not uncommon within estuaries in many regions of the world. In seasonally open systems, which are common in temperate areas, they are often associated with mouth openings. Such a kill occurred in July 2005 in the Surrey Estuary following a closed mouth period of seven months resulting in the loss of many thousands of fish. At the time the fish community within the estuary was under investigation which provided comprehensive data of this population prior to the kill. Monthly water quality monitoring was also being conducted prior to the kill and also carried out on a daily basis following the mouth opening. The Surrey was stratified during the closed mouth phase, isolated waters below the halocline had stagnated and become anoxic. As a result only waters above the halocline contained oxygen concentrations capable of sustaining most fish. It appears that if a mouth opening happens under low flow conditions, a shearing effect occurs within the water column where surface waters flow out to sea leaving deeper waters behind. This resulted in only anoxic waters being present for in excess of six days and was responsible for the fish kill. Fish sampling of the Surrey Estuary was conducted three and six months following the kill and those data were compared to that collected in the 12 months prior to the event. Three months after the kill few fish were collected within the estuary and included marine opportunists near the mouth and estuarine resident species in the far upper reaches of the system. However six months following the kill large numbers of estuarine resident species were collected throughout the Surrey Estuary. As many species were euryhaline, it is believed that some individuals migrated into freshwater reaches of the Surrey to escape the anoxic conditions within the estuary. As conditions improved they recolonised the Surrey Estuary. The high fecundity and rapid growth of these small, short lived species probably aided in their re

  17. Inter and intra-population phenotypic and genotypic structuring in the European whitefish Coregonus lavaretus, a rare freshwater fish in Scotland.

    PubMed

    Adams, C E; Bean, C W; Dodd, J A; Down, A; Etheridge, E C; Gowans, A R D; Hooker, O; Knudsen, R; Lyle, A A; Winfield, I J; Præbel, K

    2016-02-01

    This study revealed between-lake genetic structuring between Coregonus lavaretus collected from the only two native populations of this species in Scotland, U.K. (Lochs Eck and Lomond) evidenced by the existence of private alleles (12 in Lomond and four in Eck) and significant genetic differentiation (FST = 0·056) across 10 microsatellite markers. Juvenile C. lavaretus originating from eggs collected from the two lakes and reared in a common-garden experiment showed clear phenotypic differences in trophic morphology (i.e. head and body shape) between these populations indicating that these characteristics were, at least partly, inherited. Microsatellite analysis of adults collected from different geographic regions within Loch Lomond revealed detectable and statistically significant but relatively weak genetic structuring (FST = 0·001-0·024) and evidence of private alleles related to the basin structure of the lake. Within-lake genetic divergence patterns suggest three possibilities for this observed pattern: (1) differential selection pressures causing divergence into separate gene pools, (2) a collapse of two formerly divergent gene pools and (3) a stable state maintained by balancing selection forces resulting from spatial variation in selection and lake heterogeneity. Small estimates of effective population sizes for the populations in both lakes suggest that the capacity of both populations to adapt to future environmental change may be limited. PMID:26748995

  18. Mapping the unknown: Modeling future scenarios of riverine fish communities

    EPA Science Inventory

    Riverscapes can be defined by spatial and temporal variation in a suite of environmental conditions that influence the distribution and persistence of riverine fish populations. Fish in riverscapes can exhibit extensive movements, require seasonally-distinct habitats for spawnin...

  19. Diversity priors for learning early visual features.

    PubMed

    Xiong, Hanchen; Rodríguez-Sánchez, Antonio J; Szedmak, Sandor; Piater, Justus

    2015-01-01

    This paper investigates how utilizing diversity priors can discover early visual features that resemble their biological counterparts. The study is mainly motivated by the sparsity and selectivity of activations of visual neurons in area V1. Most previous work on computational modeling emphasizes selectivity or sparsity independently. However, we argue that selectivity and sparsity are just two epiphenomena of the diversity of receptive fields, which has been rarely exploited in learning. In this paper, to verify our hypothesis, restricted Boltzmann machines (RBMs) are employed to learn early visual features by modeling the statistics of natural images. Considering RBMs as neural networks, the receptive fields of neurons are formed by the inter-weights between hidden and visible nodes. Due to the conditional independence in RBMs, there is no mechanism to coordinate the activations of individual neurons or the whole population. A diversity prior is introduced in this paper for training RBMs. We find that the diversity prior indeed can assure simultaneously sparsity and selectivity of neuron activations. The learned receptive fields yield a high degree of biological similarity in comparison to physiological data. Also, corresponding visual features display a good generative capability in image reconstruction. PMID:26321941

  20. Diversity priors for learning early visual features

    PubMed Central

    Xiong, Hanchen; Rodríguez-Sánchez, Antonio J.; Szedmak, Sandor; Piater, Justus

    2015-01-01

    This paper investigates how utilizing diversity priors can discover early visual features that resemble their biological counterparts. The study is mainly motivated by the sparsity and selectivity of activations of visual neurons in area V1. Most previous work on computational modeling emphasizes selectivity or sparsity independently. However, we argue that selectivity and sparsity are just two epiphenomena of the diversity of receptive fields, which has been rarely exploited in learning. In this paper, to verify our hypothesis, restricted Boltzmann machines (RBMs) are employed to learn early visual features by modeling the statistics of natural images. Considering RBMs as neural networks, the receptive fields of neurons are formed by the inter-weights between hidden and visible nodes. Due to the conditional independence in RBMs, there is no mechanism to coordinate the activations of individual neurons or the whole population. A diversity prior is introduced in this paper for training RBMs. We find that the diversity prior indeed can assure simultaneously sparsity and selectivity of neuron activations. The learned receptive fields yield a high degree of biological similarity in comparison to physiological data. Also, corresponding visual features display a good generative capability in image reconstruction. PMID:26321941

  1. Cultured fish: integrative biology and management of domestication and interactions with wild fish.

    PubMed

    Lorenzen, Kai; Beveridge, Malcolm C M; Mangel, Marc

    2012-08-01

    Fish aquaculture for commodity production, fisheries enhancement and conservation is expanding rapidly, with many cultured species undergoing inadvertent or controlled domestication. Cultured fish are frequently released, accidentally and deliberately, into natural environments where they may survive well and impact on wild fish populations through ecological, genetic, and technical interactions. Impacts of fish released accidentally or for fisheries enhancement tend to be negative for the wild populations involved, particularly where wild populations are small, and/or highly adapted to local conditions, and/or declining. Captive breeding and supplementation can play a positive role in restoring threatened populations, but the biology of threatened populations and the potential of culture approaches for conserving them remain poorly understood. Approaches to the management of domestication and cultured-wild fish interactions are often ad hoc, fragmented and poorly informed by current science. We develop an integrative biological framework for understanding and managing domestication and cultured-wild fish interactions. The framework sets out how management practices in culture and for cultured fish in natural environments affect domestication processes, interactions between cultured and wild fish, and outcomes in terms of commodity production, fisheries yield, and conservation. We also develop a typology of management systems (specific combinations of management practices in culture and in natural environments) that are likely to provide positive outcomes for particular management objectives and situations. We close by setting out avenues for further research that will simultaneously improve fish domestication and management of cultured-wild fish interactions and provide key insights into fundamental biology. PMID:22221879

  2. FRAMEWORK FOR DEVELOPMENT AND APPLICATION OF POPULATION RISK-BASED CRITERIA FOR FISH AND WILDLIFE EXPOSED TO PERSISTENT BIOACCUMULATIVE TOXICANTS (PBTS)

    EPA Science Inventory

    The fundamental purpose of this project is to insure that appropriate chemical residue-based toxicity data and models are effectively used, in conjunction with bioaccumulation and population dynamics models, to determine site-specific water and sediment quality conditions require...

  3. Seasonal patterns in the fish and epibenthic crustaceans community of an intertidal zone with particular reference to the population dynamics of plaice and brown shrimp

    NASA Astrophysics Data System (ADS)

    Amara, Rachid; Paul, Catherine

    2003-03-01

    The intertidal zone of a sandy beach located on the French coast of the Eastern Channel, was sampled during spring and summer 2000 to analyse the community structure of fish and epibenthic crustaceans. The presence of many juvenile fish (mainly O-group) and crustaceans indicated the important role played by the intertidal zone as a nursery ground. The brown shrimp, Crangon crangon and O-group plaice, Pleuronectes platessa are the two most abundant species of the intertidal ecosystem. Plaice settlement period extended from mid-March to early June. Over the survey period, densities increased to maximum numbers of about 27 ind. 10 m -2 in mid-April. In the following week, density rapidly decreased due to mortality and migration into deeper waters. The mortality was attributed mainly to predation by brown shrimp ( C. crangon) and to a lesser extent by the shore crab ( Carcinus maenas). The mean size of 0-group plaice increased from 19 mm in mid-April to 58 mm in July. Growth of juvenile 0-group plaice is described by an exponential equation: total length (TL, mm) = 12.602 e 0.022 (post-settlement age). Post-settlement growth rates, estimated by otolith microstructure analysis, were 0.38 mm d -1 for plaice ≤30 mm and 0.61 mm d -1 for plaice >30 mm. Settlement of juvenile brown shrimp started in mid-April, peaked in early June (93 ind. 10 m -2) and continued with fluctuating intensity throughout the summer. Growth rate of juvenile C. crangon, estimated after the settlement peak, was 0.163 mm d -1. Growth conditions of juvenile plaice and C. crangon were analysed by comparing estimated growth in the field with predicted maximum growth according to temperature-growth rate models from experimental studies of growth with unlimited food supply. For plaice, the estimated growth rate was lower (plaice ≤30 mm) but similar (plaice >30 mm) to the predicted maximum growth suggesting a food limitation only for newly settled individual. The observed increase in mean length of

  4. Physical priors in virtual colonoscopy

    NASA Astrophysics Data System (ADS)

    Rivaz, Hassan; Shinagawa, Yoshihisa; Liang, Jianming

    2009-02-01

    Electronic colon cleansing (ECC) aims to remove the contrast agent from the CT abdominal images so that a virtual model of the colon can be constructed. Virtual colonoscopy requires either liquid or solid preparation of the colon before CT imaging. This paper has two parts to address ECC in both preparation methods. In the first part, meniscus removal in the liquid preparation is studied. The meniscus is the curve seen at the top of a liquid in response to its container. Left on the colon wall, the meniscus can decrease the sensitivity and specificity of virtual colonoscopy. We state the differential equation that governs the profile of the meniscus and propose an algorithm for calculating the boundary of the contrast agent. We compute the surface tension of the liquid-colon wall contact using in-vivo CT data. Our results show that the surface tension can be estimated with an acceptable degree of uncertainty. Such an estimate, along with the meniscus profile differential equation will be used as an a priori knowledge to aid meniscus segmentation. In the second part, we study ECC in solid preparation of colon. Since the colon is pressurized with air before acquisition of the CT images, a prior on the shape of the colon wall can be obtained. We present such prior and investigate it using patient data. We show the shape prior is held in certain parts of the colon and propose a method that uses this prior to ease pseudoenhancement correction.

  5. Prior Distributions on Symmetric Groups

    ERIC Educational Resources Information Center

    Gupta, Jayanti; Damien, Paul

    2005-01-01

    Fully and partially ranked data arise in a variety of contexts. From a Bayesian perspective, attention has focused on distance-based models; in particular, the Mallows model and extensions thereof. In this paper, a class of prior distributions, the "Binary Tree," is developed on the symmetric group. The attractive features of the class are: it…

  6. Distribution, population biology, and trophic ecology of the deepwater demersal fish Halosauropsis macrochir (Pisces: Halosauridae) on the mid-Atlantic Ridge.

    PubMed

    Bergstad, Odd Aksel; Clark, Laura; Hansen, Hege Øverbø; Cousins, Nicola

    2012-01-01

    Halosauropsis macrochir ranked amongst the most abundant and widespread demersal fishes on the mid-Atlantic Ridge of the North Atlantic (Iceland-Azores) with greatest abundance at 1700-3500 m. All sizes, ranging from 10-76 cm total length, occurred in the area without any apparent spatial pattern or depth trend. Using otolith sections displaying growth increments assumed to represent annuli, the age range recorded was 2-36 years, but most individuals were <20 years. Length and weight at age data were used to fit growth models. No differences between sexes in length and weight at age were observed. The majority of samples had a surplus of males. Diet analysis showed that H. macrochir feeds on Crustacea, Teleostei, Polychaeta, and Cephalopoda, but few prey could be identified to lower taxonomical levels. The mid-Atlantic Ridge constitutes a major portion of the North Atlantic living space of the abyssal halosaur where it completes its full life cycle, primarily as an actively foraging euryophagous micronekton/epibenthos and infauna feeder, becoming a partial piscivore with increasing size. PMID:22384030

  7. Distribution, Population Biology, and Trophic Ecology of the Deepwater Demersal Fish Halosauropsis macrochir (Pisces: Halosauridae) on the Mid-Atlantic Ridge

    PubMed Central

    Bergstad, Odd Aksel; Clark, Laura; Hansen, Hege Øverbø; Cousins, Nicola

    2012-01-01

    Halosauropsis macrochir ranked amongst the most abundant and widespread demersal fishes on the mid-Atlantic Ridge of the North Atlantic (Iceland-Azores) with greatest abundance at 1700–3500 m. All sizes, ranging from 10–76 cm total length, occurred in the area without any apparent spatial pattern or depth trend. Using otolith sections displaying growth increments assumed to represent annuli, the age range recorded was 2–36 years, but most individuals were <20 years. Length and weight at age data were used to fit growth models. No differences between sexes in length and weight at age were observed. The majority of samples had a surplus of males. Diet analysis showed that H. macrochir feeds on Crustacea, Teleostei, Polychaeta, and Cephalopoda, but few prey could be identified to lower taxonomical levels. The mid-Atlantic Ridge constitutes a major portion of the North Atlantic living space of the abyssal halosaur where it completes its full life cycle, primarily as an actively foraging euryophagous micronekton/epibenthos and infauna feeder, becoming a partial piscivore with increasing size. PMID:22384030

  8. Commercial Fishing.

    ERIC Educational Resources Information Center

    Florida State Dept. of Education, Tallahassee. Div. of Vocational Education.

    This document is a curriculum framework for a program in commercial fishing to be taught in Florida secondary and postsecondary institutions. This outline covers the major concepts/content of the program, which is designed to prepare students for employment in occupations with titles such as net fishers, pot fishers, line fishers, shrimp boat…

  9. Gone Fishing.

    ERIC Educational Resources Information Center

    Olson-Demme, Hillary; Kisiel, Jim

    2003-01-01

    Presents a hands-on activity in which students create a model of an ocean ecosystem to gain an understanding of how humans can alter biodiversity through their actions. Uses differing levels of fishing technology to explore the concepts of sustainability and overfishing. (Author/SOE)

  10. Acoustic Communication in Fishes and Potential Effects of Noise.

    PubMed

    Mann, David A

    2016-01-01

    Many soniferous fishes such as cods and groupers are commercially important. Sounds are produced during courtship and spawning, and there is the potential for aquatic