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Sample records for fortunei bivalvia mytilidae

  1. Golden mussel Limnoperna fortunei (Bivalvia: Mytilidae) distribution in the main hydrographical basins of Uruguay: update and predictions.

    PubMed

    Brugnoli, Ernesto; Clemente, Juan; Boccardi, Lucía; Borthagaray, Ana; Scarabino, Fabrizio

    2005-06-01

    Limnoperna fortunei, an Asiatic rivers bivalve has become a worldwide problematic invasive species causing several water quality and macrofouling problems. In the Neotropical region it was first recorded in 1991 in the Rio de la Plata coast, Buenos Aires province. Since this, it showed a quick upstream invasion into the principals aquatic systems of the Plata Basin. Nevertheless, there is not a study about its invasion and distribution process in aquatic systems of Uruguay. We describe the new records of Limnoperna fortunei in Uruguayan coast of Rio de la Plata, Santa Lucia, Negro and Uruguay Rivers. With these results we aim to estimate its distributional limits for Uruguay main hydrographical basins. We also deal with the role of salinity as the main abiotic factor in limiting the east distribution of this mussel in Uruguayan coast of Rio de la Plata and as a potential determinant of the "new" colonization on the Atlantic and the Merin Lagoon Basins. Its presence in the ecosystems not only can cause changes at the ecosystem level but also endanger the associated community, favoring the displacement and the disappearance of endemic species. PMID:15895160

  2. The complete mitochondrial genome of the golden mussel Limnoperna fortunei and comparative mitogenomics of Mytilidae.

    PubMed

    Uliano-Silva, Marcela; Americo, Juliana Alves; Costa, Igor; Schomaker-Bastos, Alex; de Freitas Rebelo, Mauro; Prosdocimi, Francisco

    2016-02-15

    Here we describe the mitochondrial genome of the golden mussel Limnoperna fortunei, an Asian bivalve which has become one of the most aggressive invasive species in Japan and South America. The mitochondrial genome of L. fortunei does not present conserved gene arrangement when compared to the other Mytilidae species suggesting a high degree of gene recombination in the mitochondria of this clade. In addition, the golden mussel mitogenome encodes two copies of tRNA(Lys) and presents a putative pseudogene for the atp8 gene sequence that encodes a 27 amino acid peptide containing an in-frame stop codon. The presence of this pseudogene raises the question as to whether atp8 is encoded in some bivalve mitochondrial genomes or not. The phylogenetic analysis of all complete mitochondrial genomes available from Mytilidae mussels confirmed the close evolutionary relationships among bivalves from the genus Mytilys and placed L. fortunei coming from a more ancestral branch on the family. The supermatrix phylogeny described used the concatenation of all 12 genes from the mitochondria and disputed the monophyly of the genus Perna, as Perna perna was shown to be more closely related to Brachidontes exustus than to Perna viridis. The comparative analysis of mitogenome synteny also confirmed the polyphyly of the genus Perna. The complete and annotated mitogenome has been published in GenBank under the accession number KP756905. PMID:26639990

  3. Methanotrophic marine molluscan (Bivalvia, Mytilidae) symbiosis: mussels fueled by gas

    SciTech Connect

    Childress, J.J.; Fisher, C.R.; Brooks, J.M.; Kennicutt, M.C. II; Bidigare, R.; Anderson, A.E.

    1986-09-19

    An undescribed mussel (family Mytilidae), which lives in the vicinity of hydrocarbon seeps in the Gulf of Mexico, consumes methane (the principal component of natural gas) at a high rate. The methane consumption is limited to the gills of these animals and is apparently due to the abundant intracellular bacteria found there. This demonstrates a methane-based symbiosis between an animal and intracellular bacteria. Methane consumption is dependent on the availability of oxygen and is inhibited by acetylene. The consumption of methane by these mussels is associated with a dramatic increase in oxygen consumption and carbon dioxide production. As the methane consumption of the bivalve can exceed its carbide dioxide production, the symbiosis may be able to entirely satisfy its carbon needs from methane uptake. The very light (delta/sup 13/C = -51 to -57 per mil) stable carbon isotope ratios found in this animal support methane (delta/sup 13/C = -45 per mil at this site) as the primary carbon source for both the mussels and their symbionts. 19 references, 2 figures, 1 table.

  4. Assessment of gonadal follicle size in the invading bivalve Limnoperna fortunei (Mytilidae).

    PubMed

    Guimarey, Pilar; Darrigran, Gustavo; Damborenea, Cristina; Penchaszadeh, Pablo E

    2011-08-01

    Limnoperna fortunei is an invasive gonochoristic and byssate freshwater bivalve originary from Southeast Asia. It shows great adaptive-reproductive ability, so knowledge of the gonadal cycle is an important factor for the prevention and control of this bioinvasion. This species is highly damaging to natural and human environments. We analyzed the distribution and maturity state of reproductive follicles in the mantle of both male and females. Male results are not shown but, in general, they followed the same pattern as that of females. Routine histological techniques included serial longitudinal sections and transversal sections in three body regions (anterior, middle and psoterior). Oocytes with conspicuous nucleoli were measured on both types of sections to estimate the maturity stage in the different regions. ANOVA indicates that there were no significant differences in maturity ratio between the studied regions, so that a small number of sections would render precise results to assess maturity. PMID:22128591

  5. Phylogenetic characterization of three morphs of mussels (Bivalvia, Mytilidae) inhabiting isolated marine environments in Palau Islands.

    PubMed

    Goto, Tadasuke V; Tamate, Hidetoshi B; Hanzawa, Naoto

    2011-08-01

    Marine lakes in the Palau Islands are known to harbor unique marine fauna that have remained isolated since the formation of the lakes after the Last Glacial Maximum. We analyzed mussels from marine lakes located on different islands and conducted morphological, phylogenetic and population genetic characterization to clarify their evolutionary history. The mussels were morphologically classified into three differentiated morphs: NS, ON, and MC. Their common characteristics were consistent with the Brachidontes-Hormomya complex of the Mytilidae family. Phylogenetic analysis based on the nuclear 18S ribosomal RNA gene supported the taxonomic position of the mussels among the Mytilidae. In the mitochondrial cytochrome c oxidase subunit I (COI) gene lineage, NS-and MC-morphs were highly diverged from each other; their estimated time of divergence dates back to the mid-Pleistocene. ON-morph was more closely related to MC-morph, although the shell morphologies of ON- and MC-morphs were easily distinguishable. Population genetic analysis revealed the coexistence of highly diverged haplotypes within a population of ON-morph, indicating introgression of mtDNA among the morphs. Our data suggest that morphological differentiation of marine lake mussels can occur in a relatively short period under different environmental conditions. Thus, the marine lakes provide a unique site for the study of diversification in mussels. PMID:21800997

  6. Scorched mussels (BIVALVIA: MYTILIDAE: BRACHIDONTINAE) from the temperate coasts of South America: phylogenetic relationships, trans-Pacific connections and the footprints of Quaternary glaciations.

    PubMed

    Trovant, Berenice; Orensanz, J M Lobo; Ruzzante, Daniel E; Stotz, Wolfgang; Basso, Néstor G

    2015-01-01

    This study addresses aspects of the phylogeny and phylogeography of scorched mussels (BIVALVIA: MYTILIDAE: BRACHIDONTINAE) from southern South America (Argentina and Chile), as well as their ecophylogenetic implications. Relationships were inferred from sequences of two nuclear (28S and 18S) and one mitochondrial (COI) genes, using Bayesian and maximum likelihood analyses. Our results indicate that the monophyletic BRACHIDONTINAE include three well supported clades: [i] Brachidontes Swainson (=Hormomya Mörch), [ii] Ischadium Jukes-Browne+Geukensia van de Poel, and [iii] Austromytilus Laseron+Mytilisepta Habe (usually considered a member of the SEPTIFERINAE)+Perumytilus Olsson. Species of clade [iii] are distributed along the temperate coasts of the Pacific Ocean. Available evidence supports divergence between Austromytilus (Australia) and Perumytilus (South American) following the breakup of Australian, Antarctic and South American shelves. Four brachidontins occur in southern South America: Brachidontes rodriguezii (d'Orbigny), B. granulatus (Hanley), and two genetically distinct clades of Perumytilus. The latter are confined to the Chile-Peru (North Clade) and Magellanic (South Clade) Biogeographic Provinces, respectively warm- and cold-temperate. The South Clade is the only brachidontin restricted to cold-temperate waters. Biogeographic considerations and the fossil record prompted the hypothesis that the South Clade originated from the North Clade by incipient peripatric differentiation, followed by isolation during the Quaternary glaciations, genetic differentiation in the non-glaciated coasts of eastern Patagonia, back-expansion over southern Chile following post-LGM de-glaciation, and development of a secondary contact zone between the two clades in south-central Chile. Evidence of upper Pleistocene expansion of the South Clade parallels similar results on other organisms that have colonized coastal ecosystems from eastern Patagonia since the LGM

  7. Karyotypic diversification in Mytilus mussels (Bivalvia: Mytilidae) inferred from chromosomal mapping of rRNA and histone gene clusters

    PubMed Central

    2014-01-01

    Background Mussels of the genus Mytilus present morphologically similar karyotypes that are presumably conserved. The absence of chromosome painting probes in bivalves makes difficult verifying this hypothesis. In this context, we comparatively mapped ribosomal RNA and histone gene families on the chromosomes of Mytilus edulis, M. galloprovincialis, M. trossulus and M. californianus by fluorescent in situ hybridization (FISH). Results Major rRNA, core and linker histone gene clusters mapped to different chromosome pairs in the four taxa. In contrast, minor rRNA gene clusters showed a different behavior. In all Mytilus two of the 5S rDNA clusters mapped to the same chromosome pair and one of them showed overlapping signals with those corresponding to one of the histone H1 gene clusters. The overlapping signals on mitotic chromosomes became a pattern of alternate 5S rRNA and linker histone gene signals on extended chromatin fibers. Additionally, M. trossulus showed minor and major rDNA clusters on the same chromosome pair. Conclusion The results obtained suggest that at least some of the chromosomes bearing these sequences are orthologous and that chromosomal mapping of rRNA and histone gene clusters could be a good tool to help deciphering some of the many unsolved questions in the systematic classification of Mytilidae. PMID:25023072

  8. Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae)

    PubMed Central

    2011-01-01

    Background Doubly Uniparental Inheritance (DUI) is a fascinating exception to matrilinear inheritance of mitochondrial DNA (mtDNA). Species with DUI are characterized by two distinct mtDNAs that are inherited either through females (F-mtDNA) or through males (M-mtDNA). DUI sex-linked mitochondrial genomes share several unusual features, such as additional protein coding genes and unusual gene duplications/structures, which have been related to the functionality of DUI. Recently, new evidence for DUI was found in the mytilid bivalve Musculista senhousia. This paper describes the complete sex-linked mitochondrial genomes of this species. Results Our analysis highlights that both M and F mtDNAs share roughly the same gene content and order, but with some remarkable differences. The Musculista sex-linked mtDNAs have differently organized putative control regions (CR), which include repeats and palindromic motifs, thought to provide sites for DNA-binding proteins involved in the transcriptional machinery. Moreover, in male mtDNA, two cox2 genes were found, one (M-cox2b) 123bp longer. Conclusions The complete mtDNA genome characterization of DUI bivalves is the first step to unravel the complex genetic signals allowing Doubly Uniparental Inheritance, and the evolutionary implications of such an unusual transmission route in mitochondrial genome evolution in Bivalvia. The observed redundancy of the palindromic motifs in Musculista M-mtDNA may have a role on the process by which sperm mtDNA becomes dominant or exclusive of the male germline of DUI species. Moreover, the duplicated M-COX2b gene may have a different, still unknown, function related to DUI, in accordance to what has been already proposed for other DUI species in which a similar cox2 extension has been hypothesized to be a tag for male mitochondria. PMID:21896183

  9. Influence of salinity on the physiological conditions in mussels, Perna perna and Perna viridis (Bivalvia: Mytilidae).

    PubMed

    Segnini de Bravo, Mary Isabel

    2003-06-01

    Perna genus was introduced to Venezuela, but nowadays, Perna perna and Perna viridis coexist and are commercially exploited from their natural beds. The aim of this work was to determine the effect of salinity on the physiological conditions of these species by studying RNA/DNA and Protein/DNA ratios. The organisms were collected from natural beds at La Esmeralda, Sucre State, Venezuela, and acclimatized for 15 days under laboratory conditions at 25 degrees C, 36 per thousand salinity, pH between 7 and 8 and more than 90% of oxygen saturation. Later, they were divided in two groups: for one group, the salinity concentration was increased (36 to 45 per thousand), and for the other, the salinity was decreased (36 to 15 per thousand). The rate of change was 1 per thousand every day. Ten organisms per group of both species were taken at each of 15, 20, 25, 30, 36, 40 y 45 per thousand salinity concentrations. Protein (colorimetric method) and nucleic acids (RNA and DNA by fluorometric method) concentrations were measured in the digestive gland, gills and adductor muscle tissues. Results indicate that P. perna can physiologically compensate the increase in salinity, but not when the salinity decreased, when proteins are the most needed macromolecules. The Protein/DNA index is directly related to salinity changes in both cases. P. viridis shows physiological compensation to salinity increases and decreases. The RNA/DNA index value in both cases supports this. Digestive gland and muscle tissues are the regulating tissues in both species. These results show that P. viridis has a higher degree of adaptability to salinity changes and, therefore, a greater potential for aquaculture than P. perna. PMID:15264566

  10. Complete mitochondrial genome of the Asian green mussel Perna viridis (Bivalvia, Mytilidae).

    PubMed

    Li, Xiaoling; Wu, Xiangyun; Yu, Ziniu

    2012-10-01

    The complete mitochondrial (mt) genome of the Asian green mussel Perna viridis (16,627 bp), an economically important bivalve, was newly sequenced and annotated. P. viridis is the shortest and has a comparatively highest overall A+T content (68%) among six available genomes of marine mussels to date. The atp8 gene's length (49 a.a.) of the green mussel is unexpectedly greatly shorter than that of other marine mussels (87 a.a.). Comparison of the gene order demonstrated that the six marine mussels share no identical gene blocks although they belong to the same family, which indicates that this group should be a good model to study mtDNA evolution and mitochondria inheritance. PMID:22708864

  11. Ecocytological and toxicological responses to copper in Perna viridis (L.) (Bivalvia: Mytilidae) haemocyte lysosomal membranes.

    PubMed

    Nicholson, S

    2001-11-01

    Bivalve lysosomes are sites of intense intracellular digestion. Lysosomes accumulate many pollutants to high concentrations resulting in membrane destabilisation. Consequently, the elucidation of lysosomal membrane integrity utilising the neutral red assay has been used to good effect in pollution monitoring. Naturally occurring environmental stressors also have the potential to destabilise the membrane. Exposure to elevated copper concentrations and extremes of temperature, salinity, hypoxia, emersion and inadequate ration were investigated in haemocyte lysosomes from the tropical bivalve, Perna viridis. Elevated copper concentrations destabilised the membrane although responses were not entirely related to the exposure-concentration. Environmental stressors induced through higher thermal regimes (29 degrees C and 35 degrees C), hyposalinity (10-25/1000) and prolonged emersion elicited significant lysosomal membrane destabilisation. Hypoxia and inadequate ration did not significantly effect membrane stability. The haemocyte lysosomal membranes were generally resistant to exogenous alterations within normal ranges and only showed significant labilisation at environmental extremes. P. viridis haemocyte lysosomal membrane biomarkers should, therefore, prove robust to natural stressors when deployed in marine monitoring programmes and thus prove a valuable, rapid, cost-effective cytological marker of pollution. PMID:11680735

  12. Pollution monitoring in Southeast Asia using biomarkers in the mytilid mussel Perna viridis (Mytilidae: Bivalvia).

    PubMed

    Nicholson, S; Lam, P K S

    2005-01-01

    Mytilid mussels have been extensively used in marine pollution monitoring programmes in temperate regions of the world although widespread subtropical representatives such as Perna viridis have only comparatively recently been utilised to monitor the sublethal effects of pollution in Southeast Asia. P. viridis is considered a subtropical equivalent of the temperate Mytilus sp. and has considerable potential for pollution monitoring throughout its geographical range. This paper reviews the current status of biomarkers in P. viridis and provides some recommendations on biological-effects monitoring to facilitate the assessment of coastal pollution in Southeast Asia. PMID:15607786

  13. Differential Transcriptome Analysis between Paulownia fortunei and Its Synthesized Autopolyploid

    PubMed Central

    Zhang, Xiaoshen; Deng, Minjie; Fan, Guoqiang

    2014-01-01

    Paulownia fortunei is an ecologically and economically important tree species that is widely used as timber and chemical pulp. Its autotetraploid, which carries a number of valuable traits, was successfully induced with colchicine. To identify differences in gene expression between P. fortunei and its synthesized autotetraploid, we performed transcriptome sequencing using an Illumina Genome Analyzer IIx (GAIIx). About 94.8 million reads were generated and assembled into 383,056 transcripts, including 18,984 transcripts with a complete open reading frame. A conducted Basic Local Alignment Search Tool (BLAST) search indicated that 16,004 complete transcripts had significant hits in the National Center for Biotechnology Information (NCBI) non-redundant database. The complete transcripts were given functional assignments using three public protein databases. One thousand one hundred fifty eight differentially expressed complete transcripts were screened through a digital abundance analysis, including transcripts involved in energy metabolism and epigenetic regulation. Finally, the expression levels of several transcripts were confirmed by quantitative real-time PCR. Our results suggested that polyploidization caused epigenetic-related changes, which subsequently resulted in gene expression variation between diploid and autotetraploid P. fortunei. This might be the main mechanism affected by the polyploidization. Our results represent an extensive survey of the P. fortunei transcriptome and will facilitate subsequent functional genomics research in P. fortunei. Moreover, the gene expression profiles of P. fortunei and its autopolyploid will provide a valuable resource for the study of polyploidization. PMID:24663058

  14. Differential transcriptome analysis between Paulownia fortunei and its synthesized autopolyploid.

    PubMed

    Zhang, Xiaoshen; Deng, Minjie; Fan, Guoqiang

    2014-01-01

    Paulownia fortunei is an ecologically and economically important tree species that is widely used as timber and chemical pulp. Its autotetraploid, which carries a number of valuable traits, was successfully induced with colchicine. To identify differences in gene expression between P. fortunei and its synthesized autotetraploid, we performed transcriptome sequencing using an Illumina Genome Analyzer IIx (GAIIx). About 94.8 million reads were generated and assembled into 383,056 transcripts, including 18,984 transcripts with a complete open reading frame. A conducted Basic Local Alignment Search Tool (BLAST) search indicated that 16,004 complete transcripts had significant hits in the National Center for Biotechnology Information (NCBI) non-redundant database. The complete transcripts were given functional assignments using three public protein databases. One thousand one hundred fifty eight differentially expressed complete transcripts were screened through a digital abundance analysis, including transcripts involved in energy metabolism and epigenetic regulation. Finally, the expression levels of several transcripts were confirmed by quantitative real-time PCR. Our results suggested that polyploidization caused epigenetic-related changes, which subsequently resulted in gene expression variation between diploid and autotetraploid P. fortunei. This might be the main mechanism affected by the polyploidization. Our results represent an extensive survey of the P. fortunei transcriptome and will facilitate subsequent functional genomics research in P. fortunei. Moreover, the gene expression profiles of P. fortunei and its autopolyploid will provide a valuable resource for the study of polyploidization. PMID:24663058

  15. Colwellia and sulfur-oxidizing bacteria: An unusual dual symbiosis in a Terua mussel (Mytilidae: Bathymodiolinae) from whale falls in the Antilles arc

    NASA Astrophysics Data System (ADS)

    Duperron, Sébastien; Gros, Olivier

    2016-09-01

    Seven individuals of a single morphotype of mussels (Bivalvia: Mytilidae) were found attached to a naturally sunken whale intervertebral disk collected in Guadeloupe (Caribbean) at 800 m depth. These specimens resemble small Idas mussels which are found worldwide at cold seeps and hydrothermal vents, and typically harbor ectosymbiotic bacteria on their gills upon which they depend for nutrition. Based on multi-locus gene sequencing, these specimens appear to belong to a new species closely related to two species now included within the genus Terua. Unexpectedly, its closest relatives are found in the Pacific, questioning how this species has reached the Antilles arc. Based on marker gene sequence analysis, electron and fluorescence microscopy, Terua n. sp. harbors two distinct and abundant extracellular bacterial symbionts located between microvilli at the apical surface of host gill epithelial cells. One is a sulfur-oxidizing bacterium similar to the symbionts previously identified in several deep-sea mussels, while the other is related to Colwellia species, a group of cold-adapted heterotrophic bacteria able to degrade organic compounds. This study provides the first evidence for the existence of a dual symbiosis in mussels from whale fall ecosystems in the Caribbean. The evolutionary history of Terua n. sp. and potential role of its Colwellia symbionts are discussed.

  16. Introduction of the alien Xenostrobus securis (Bivalvia: Mytilidae) into Hong Kong, China: interactions with and impacts upon native species and the earlier introduced Mytilopsis sallei (Bivalvia: Dreissenidae).

    PubMed

    Morton, Brian; Leung, K F

    2015-03-15

    This constitutes the first record of the Australian alien mytilid Xenostrobus securis in China. The introduction occurred prior to 2010 probably via shipping arriving at Yantian in Mirs Bay, China, close to Hong Kong. Point sources of infection could be Australia or Korea or Japan where it has similarly been introduced. Analysis of X. securis in Hong Kong shows that it tolerates a wide range of salinities from 5.4‰ to 28.7‰. Water temperatures in Hong Kong match those in its native range. In Hong Kong, X. securis co-occurs with the similarly introduced Mytilopsis sallei and a native bivalve community. The population structure of X. securis suggests a lifespan of >2 years with new generations produced by conspecifics. Such a life history strategy is also exhibited by M. sallei. Now established in China, northern Asia, the Mediterranean and, most recently, the Iberian Atlantic, the invasion of other locations by X. securis seems probable. PMID:25599632

  17. Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae).

    PubMed

    Duperron, Sébastien; Halary, Sébastien; Lorion, Julien; Sibuet, Myriam; Gaill, Françoise

    2008-02-01

    Bathymodioline mussels occur in chemosynthesis-based ecosystems such as cold seeps, hydrothermal vents and organic debris worldwide. Their key adaptation to these environments is their association with bacterial endosymbionts which ensure a chemosynthetic primary production based on the oxidation of reduced compounds such as methane and sulfide. We herein report a multiple symbiosis involving six distinct bacterial 16S rRNA phylotypes, including two belonging to groups not yet reported as symbionts in mytilids, in a small Idas mussel found on carbonate crusts in a cold seep area located north to the Nile deep-sea fan (Eastern Mediterranean). Symbionts co-occur within hosts bacteriocytes based on fluorescence in situ hybridizations, and sequencing of functional genes suggests they have the potential to perform autotrophy, and sulfide and methane oxidation. Previous studies indicated the presence of only one or two symbiont 16S rRNA phylotypes in bathymodioline mussels. Together with the recent discovery of four bacterial symbionts in the large seep species Bathymodiolus heckerae, this study shows that symbiont diversity has probably been underestimated, and questions whether the common ancestor of bathymodioline mussels was associated with multiple bacteria. PMID:18093159

  18. Evidence for Methylotrophic Symbionts in a Hydrothermal Vent Mussel (Bivalvia: Mytilidae) from the Mid-Atlantic Ridge †

    PubMed Central

    Cavanaugh, Colleen M.; Wirsen, Carl O.; Jannasch, H. W.

    1992-01-01

    Symbioses between chemolithoautotrophic bacteria and the major macrofaunal species found at hydrothermal vents have been reported for numerous sites in the Pacific Ocean. We present microscopical and enzymatic evidence that methylotrophic bacteria occur as intracellular symbionts in a new species of mytilid mussel discovered at the Mid-Atlantic Ridge hydrothermal vents. Two distinct ultrastructural types of gram-negative procaryotic symbionts were observed within gill epithelial cells by transmission electron microscopy: small coccoid or rod-shaped cells and larger coccoid cells with stacked intracytoplasmic membranes typical of methane-utilizing bacteria. Methanol dehydrogenase, an enzyme diagnostic of methylotrophs, was detected in the mytilid gills, while tests for ribulose-1,5-bisphosphate carboxylase, the enzyme diagnostic of autotrophy via the Calvin cycle, were negative. Stable carbon isotope values (δ13C) of mytilid tissue (−32.7 and −32.5% for gill and foot tissues, respectively) fall within the range of values reported for Pacific vent symbioses but do not preclude the use of vent-derived methane reported to be isotopically heavy relative to biogenically produced methane. Images PMID:16348816

  19. Fauna Europaea: Mollusca – Bivalvia

    PubMed Central

    2015-01-01

    Abstract Fauna Europaea provides a public web-service with an index of scientific names (including important synonyms) of all living European land and freshwater animals, their geographical distribution at country level (up to the Urals, excluding the Caucasus region), and some additional information. The Fauna Europaea project covers about 230,000 taxonomic names, including 130,000 accepted species and 14,000 accepted subspecies, which is much more than the originally projected number of 100,000 species. This represents a huge effort by more than 400 contributing specialists throughout Europe and is a unique (standard) reference suitable for many users in science, government, industry, nature conservation and education. For the Mollusca-Bivalvia, data from 5 families (Margaritiferidae, Unionidae, Sphaeriidae, Cyrenidae, Dreissenidae) containing 55 species are included in this paper. European freshwater bivalves belong to the Orders Unionoida and Cardiida. All the European unionoids are included in the superfamily Unionoidea, the freshwater mussels or naiads. The European cardiids belong to the following three superfamilies: Cardioidea, Cyrenoidea and Dreissenoidea. Among the Unionoidea there are the most imperilled animal groups on the planet while the Cardioidea includes the cosmopolitan genus Pisidium, the Cyrenoidea the Asiatic clam (Corbicula fluminea) and the Dreissenoidea the famous invasive zebra mussel (Dreissena polymorpha). Basic information is summarized on their taxonomy and biology. Tabulations include a complete list of the current estimated families, genera and species. PMID:26311403

  20. Dwarf males in the teredinidae (bivalvia, pholadacea).

    PubMed

    Turner, R D; Yakovlev, Y

    1983-03-01

    Extreme sexual dimorphism in the Bivalvia is rare. The occurrence of dwarf males in Zachsia appears to be the first case in the Teredinidae and the first outside the Leptonacea. Female Zachsia release straight-hinge larvae that develop in the plankton and settle on living rhizomes of Phyllospadix. Larvae entering mantle pouches of females become males. Evolution of this life history pattern is tied to problems of living in a fragile, patchy habitat-that is, the rhizomes of Phyllospadix. PMID:17811751

  1. Development and characterization of 15 microsatellite markers for Cephalotaxus fortunei (Cephalotaxaceae)1

    PubMed Central

    Wang, Chunbo; Guo, Zhiyou; Huang, Xilian; Huang, Lu

    2016-01-01

    Premise of the study: To survey population variation and the adaptive evolution of Cephalotaxus fortunei (Cephalotaxaceae), an endemic and endangered conifer in China, microsatellite markers were developed and characterized for this species. Methods and Results: Based on the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) protocol, 15 microsatellite markers were developed for C. fortunei, 13 of which were polymorphic within a sample of 75 individuals representing five natural populations. The number of alleles per locus ranged from one to seven. The expected and observed heterozygosities were 0.108–0.738 and 0.000–1.000, respectively. Ten polymorphic loci were also successfully amplified in C. oliveri. Conclusions: These polymorphic loci provide a valuable tool for population genetic analysis of C. fortunei, which will contribute to its management and conservation. PMID:27213121

  2. An unusual case of gender-associated mitochondrial DNA heteroplasmy: the mytilid Musculista senhousia (Mollusca Bivalvia)

    PubMed Central

    Passamonti, Marco

    2007-01-01

    Background Doubly Uniparental Inheritance (DUI) represents the most outstanding exception to matrilinear inheritance of mitochondrial DNA (mtDNA), typical of Metazoa. In a few bivalve mollusks, two sex-linked mtDNAs (the so-called M and F) are inherited in a peculiar way: both daughters and sons receive their F from the mother, whereas sons inherit M from the father (males do not transmit F to their progeny). This realizes a double mechanism of transmission, in which M and F mtDNAs are inherited uniparentally. DUI systems represent a unique experimental model for testing the evolutionary mechanisms that apply to mitochondrial genomes and their transmission patterns as well as to mtDNA recombination. Results A new case of DUI is described in Musculista senhousia (Mollusca: Bivalvia: Mytilidae). Its heteroplasmy pattern is in line with standard DUI. Sequence variability analysis evidenced two main results: F haplotypes sequence variability is higher than that of M haplotypes, and F mitochondrial haplotypes experience a higher mutation rate in males' somatic tissues than in females' ones. Phylogenetic analysis revealed also that M. senhousia M and F haplotypes cluster separately from that of the other mytilids. Conclusion Sequence variability analysis evidenced some unexpected traits. The inverted variability pattern (the F being more variable than M) was new and it challenges most of the rationales proposed to account for sex-linked mtDNA evolution. We tentatively related this to the history of the Northern Adriatic populations analyzed. Moreover, F sequences evidenced a higher mutation level in male's soma, this variability being produced de novo each generation. This suggests that mechanisms evolved to protect mtDNA in females (f.i. antioxidant gene complexes) might be under relaxed selection in males. Phylogenetic analysis of sex-linked haplotypes confirmed that they have switched their roles during the evolutionary history of mytilids, at variance to what has

  3. Toxicity of Neem's oil, a potential biocide against the invasive mussel Limnoperna fortunei (Dunker 1857).

    PubMed

    Pereyra, Patricio J; Rossini, Gustavo B; Darrigran, Gustavo

    2012-12-01

    The golden mussel Limnoperna fortunei (Dunker 1857) is one of the most distributed Nuisance Invasive Species (NIS) in South America, and a threat of great concern for the industry of the area. In this study, we carried out toxicity tests made with a Neem's oil solution with L. fortunei larvae and benthonic adults (7, 13 and 19 ± 1 mm). Tests with non-target species (Daphnia magna, Lactuca sativa and Cnesterodon decemmculatus) were also made with the aim to evaluate the potential toxicity of the Neem's solution in the environment. The LC(100) of Neem's solution obtained for larvae was 500 µl/L, a value much higher than the one obtained for D. magna and C. decemmaculatus. Thus, we recommend that it should not be used in open waters. However, since the adults were killed in 72 h and the larvae in 24 h, this product can be used in closed systems, in man-made facilities. PMID:22990602

  4. Five New Alkaloids from Cephalotaxus lanceolata and C. fortunei var. alpina.

    PubMed

    Ni, Ling; Zhong, Xiu-Hong; Cai, Jie; Bao, Mei-Fen; Zhang, Bing-Jie; Wu, Jing; Cai, Xiang-Hai

    2016-06-01

    Five new alkaloids (1-5) were isolated from the leaves and twigs of Cephalotaxus lanceolata and C. fortunei var. alpina along with 24 known alkaloids. The new structures were elucidated based on spectroscopic data including 1D and 2D NMR, FTIR, UV and MS. These new alkaloids showed no cytotoxicity to HeLa, SGC-7901 gastric cancer, and A-549 lung cancer cell lines. PMID:27016921

  5. Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

    PubMed Central

    Uliano-Silva, Marcela; Americo, Juliana Alves; Brindeiro, Rodrigo; Dondero, Francesco; Prosdocimi, Francisco; de Freitas Rebelo, Mauro

    2014-01-01

    The success of the Asian bivalve Limnoperna fortunei as an invader in South America is related to its high acclimation capability. It can inhabit waters with a wide range of temperatures and salinity and handle long-term periods of air exposure. We describe the transcriptome of L. fortunei aiming to give a first insight into the phenotypic plasticity that allows non-native taxa to become established and widespread. We sequenced 95,219 reads from five main tissues of the mussel L. fortunei using Roche’s 454 and assembled them to form a set of 84,063 unigenes (contigs and singletons) representing partial or complete gene sequences. We annotated 24,816 unigenes using a BLAST sequence similarity search against a NCBI nr database. Unigenes were divided into 20 eggNOG functional categories and 292 KEGG metabolic pathways. From the total unigenes, 1,351 represented putative full-length genes of which 73.2% were functionally annotated. We described the first partial and complete gene sequences in order to start understanding bivalve invasiveness. An expansion of the hsp70 gene family, seen also in other bivalves, is present in L. fortunei and could be involved in its adaptation to extreme environments, e.g. during intertidal periods. The presence of toll-like receptors gives a first insight into an immune system that could be more complex than previously assumed and may be involved in the prevention of disease and extinction when population densities are high. Finally, the apparent lack of special adaptations to extremely low O2 levels is a target worth pursuing for the development of a molecular control approach. PMID:25047650

  6. Comparative Analysis and Identification of miRNAs and Their Target Genes Responsive to Salt Stress in Diploid and Tetraploid Paulownia fortunei Seedlings

    PubMed Central

    Fan, Guoqiang; Li, Xiaoyu; Deng, Minjie; Zhao, Zhenli; Yang, Lu

    2016-01-01

    Salt stress is a global environmental problem that affects plant growth and development. Paulownia fortunei is an adaptable and fast-growing deciduous tree native to China that is environmentally and economically important. MicroRNAs (miRNAs) play important regulatory roles in growth, development, and stress responses in plants. MiRNAs that respond to biotic stresses have been identified; however, how miRNAs in P. fortunei respond to salt stress has not yet been reported. To identify salt-stress-responsive miRNAs and predict their target genes, four small RNA and four degradome libraries were constructed from NaCl-treated and NaCl-free leaves of P. fortunei seedlings. The results indicated that salt stress had different physiological effects on diploid and tetraploid P. fortunei. We detected 53 conserved miRNAs belonging to 17 miRNA families and 134 novel miRNAs in P. fortunei. Comparing their expression levels in diploid and tetraploid P. fortunei, we found 10 conserved and 10 novel miRNAs that were significantly differentially expressed under salt treatment, among them eight were identified as miRNAs probably associated with higher salt tolerance in tetraploid P. fortunei than in diploid P. fortunei. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses were performed to predict the functions of the target genes of the conserved and novel miRNAs. The expressions of 10 differentially expressed miRNAs were validated by quantitative real-time polymerase chain reaction (qRT-PCR). This is the first report on P. fortunei miRNAs and their target genes under salt stress. The results provided information at the physiological and molecular levels for further research into the response mechanisms of P. fortunei to salt stress. PMID:26894691

  7. A molecular phylogeny of the marine mussel genus Perna (Bivalvia: Mytilidae) based on nuclear (ITS1&2) and mitochondrial (COI) DNA sequences.

    PubMed

    Wood, Ann R; Apte, Smita; MacAvoy, Elizabeth S; Gardner, Jonathan P A

    2007-08-01

    A molecular phylogeny is presented for marine mussels of the genus Perna, based on nuclear (ITS1,ITS2) and mitochondrial (COI) DNA sequence data. The three generally recognised species (Perna viridis, Perna perna and Perna canaliculus) and one putative species (Perna picta) were each sampled from several locations within their known geographic distributions. A range of phylogenetic analyses was used to investigate the current taxonomic assignments, evolutionary relationships and the biogeographical history of the genus. The different analyses produced similar, well supported topologies and verified the monophyly of the genus with respect to five mytilid outgroup species. P. perna (Atlantic), P. viridis (Indo-West Pacific), and P. canaliculus (New Zealand) each formed distinct clades, confirming their specific status. Putative P. picta from North Africa clustered within the P. perna clade and is not regarded as a separate species. P. perna and P. canaliculus were the most closely related of the three species. Possible biogeographic explanations for the present species distributions are evaluated. PMID:17292632

  8. Lysosomal membrane stability, phagocytosis and tolerance to emersion in the mussel Perna viridis (Bivalvia: Mytilidae) following exposure to acute, sublethal, copper.

    PubMed

    Nicholson, S

    2003-08-01

    The mytilid mussel Perna viridis is distributed throughout the Indo-Pacific region and is potentially a suitable candidate for biological effects (biomarker) monitoring in the subtropics. A suite of cytological and physiological responses to acute (48-72 h) copper exposures of 50-200 microgl(-1) were assessed in order to determine the suitability of P. viridis for marine pollution monitoring. Copper elicited significant destabilisation of the haemocyte lysosomal membranes and also impaired phagocytosis. Survival during emersion following exposure to copper was not related to the experimental copper exposures suggesting that higher metal concentrations may be required to interfere with anaerobic enzymes responsible for suppression of metabolism. Based on this preliminary study, cytological biomarkers evaluated in the haemocytes extracted from P. viridis should prove an effective non-destructive means of assessing metal pollution throughout the mussels subtropical range. PMID:12820995

  9. [Growth and survival of the green mussel P. viridis (Bivalvia: Mytilidae) in bottom culture conditions in Turpialito, Golfo de Cariaco, Venezuela].

    PubMed

    Acosta, Vanessa; Montes, Marbelis; Cortez, Roraysi; Guevara, Miguel; Lodeiros, César

    2012-12-01

    Mussels represent one of the most important mollusk species for culture activities around the world, and their growth may depend on the culture system used and locality. In this study, we evaluated the growth of Perna viridis in bottom culture to test its performance when using natural food, and to decide its use as a culture species in the Gulf of Cariaco. For this, mussel seeds (35.81 +/- 1.41 mm in length) were obtained in the locality of Guaca (North coast of Sucre state) and transferred to the Hydrobiological Station of Turpialito, Gulf of Cariaco, Sucre state, Venezuela, where they were planted in "Spanish baskets" to evaluate their growth between July 2007 and February 2008. Monthly survival was determined and the maximum shell length, dry mass of muscle and remains tissues of the gonad. The environmental parameters (water temperature, salinity, dissolved oxygen, chlorophyll a, total seston and organic fraction), in the cultivation area were determined every 15 days. Monthly measurements were made of proteins, lipids and carbohydrates to seston. During the entire study the mussels showed continued growth, ultimately reaching a maximum length of 78.7 +/- 4.43 mm. However, the growth rate of the dry mass of somatic (muscle, other tissue) and reproductive tissues showed variability throughout the study, and observed a significant increase by the end of the experiment. The observed variations in the growth rate of the reproductive tissue mass depended on the reserves accumulated and food offered by the environment. The organic seston throughout the experience showed an independence of temperature and chlorophyll a values; this one maintained values above 1 mg/L, thus forming the main food resource for mussels. The high content of proteins, lipids and carbohydrates observed in the seston at the end of the study, might be mainly associated with coastal upwelling, which provides a great food contribution of phytoplankton and organic type. The high survival rate (>80%), increase in the length of the shell and the high gonad production, suggests an excellent physiological condition of P. viridis, related to the availability and quality of food particularly the organic type present in the medium. We concluded that the bottom culture can provide an alternative aquaculture production in the Gulf of Cariaco. PMID:23342526

  10. Integrated Use of Biomarkers (O : N Ratio and Acetylcholinesterase Inhibition) on Aulacomya ater (Molina, 1782) (Bivalvia: Mytilidae) as a Criteria for Effects of Organophosphate Pesticide Exposition.

    PubMed

    Führer, Eduardo; Rudolph, Anny; Espinoza, Claudio; Díaz, Rodrigo; Gajardo, Marisol; Camaño, Nuria

    2012-01-01

    The effect of residual concentrations of organophosphate pesticide chlorpyrifos (Lorsban 4E) on the activity of the acetylcholinesterase enzyme and oxygen : nitrogen ratio in the mussel Aulacomya ater was analyzed. Toxicity tests show a sensitivity to the pesticide in the bivalve estimated at 16 μg L(-1) (LC(50-96 hours)). Concentrations between 0.2 and 1.61 μg L(-1) were able to inhibit significantly the AChE activity, and concentrations between 0.8 and 1.61 μg L(-1) stimulate ammonia excretion and decrease oxygen : ammonia-N (O : N) ratio, with respect to the control group. A. ater proved to be a species sensitive to pesticide exposure and easy to handle in lab conditions. Thus, it is recommended as a bioindicator for use in programs of environmental alertness in the Eastern South Pacific coastal zone. PMID:22619673

  11. Integrated Use of Biomarkers (O : N Ratio and Acetylcholinesterase Inhibition) on Aulacomya ater (Molina, 1782) (Bivalvia: Mytilidae) as a Criteria for Effects of Organophosphate Pesticide Exposition

    PubMed Central

    Führer, Eduardo; Rudolph, Anny; Espinoza, Claudio; Díaz, Rodrigo; Gajardo, Marisol; Camaño, Nuria

    2012-01-01

    The effect of residual concentrations of organophosphate pesticide chlorpyrifos (Lorsban 4E) on the activity of the acetylcholinesterase enzyme and oxygen : nitrogen ratio in the mussel Aulacomya ater was analyzed. Toxicity tests show a sensitivity to the pesticide in the bivalve estimated at 16 μg L−1 (LC50−96 hours). Concentrations between 0.2 and 1.61 μg L−1 were able to inhibit significantly the AChE activity, and concentrations between 0.8 and 1.61 μg L−1 stimulate ammonia excretion and decrease oxygen : ammonia-N (O : N) ratio, with respect to the control group. A. ater proved to be a species sensitive to pesticide exposure and easy to handle in lab conditions. Thus, it is recommended as a bioindicator for use in programs of environmental alertness in the Eastern South Pacific coastal zone. PMID:22619673

  12. Evidence for a Fourteenth mtDNA-Encoded Protein in the Female-Transmitted mtDNA of Marine Mussels (Bivalvia: Mytilidae)

    PubMed Central

    Breton, Sophie; Ghiselli, Fabrizio; Passamonti, Marco; Milani, Liliana; Stewart, Donald T.; Hoeh, Walter R.

    2011-01-01

    Background A novel feature for animal mitochondrial genomes has been recently established: i.e., the presence of additional, lineage-specific, mtDNA-encoded proteins with functional significance. This feature has been observed in freshwater mussels with doubly uniparental inheritance of mtDNA (DUI). The latter unique system of mtDNA transmission, which also exists in some marine mussels and marine clams, is characterized by one mt genome inherited from the female parent (F mtDNA) and one mt genome inherited from the male parent (M mtDNA). In freshwater mussels, the novel mtDNA-encoded proteins have been shown to be mt genome-specific (i.e., one novel protein for F genomes and one novel protein for M genomes). It has been hypothesized that these novel, F- and M-specific, mtDNA-encoded proteins (and/or other F- and/or M-specific mtDNA sequences) could be responsible for the different modes of mtDNA transmission in bivalves but this remains to be demonstrated. Methodology/Principal Findings We investigated all complete (or nearly complete) female- and male-transmitted marine mussel mtDNAs previously sequenced for the presence of ORFs that could have functional importance in these bivalves. Our results confirm the presence of a novel F genome-specific mt ORF, of significant length (>100aa) and located in the control region, that most likely has functional significance in marine mussels. The identification of this ORF in five Mytilus species suggests that it has been maintained in the mytilid lineage (subfamily Mytilinae) for ∼13 million years. Furthermore, this ORF likely has a homologue in the F mt genome of Musculista senhousia, a DUI-containing mytilid species in the subfamily Crenellinae. We present evidence supporting the functionality of this F-specific ORF at the transcriptional, amino acid and nucleotide levels. Conclusions/Significance Our results offer support for the hypothesis that “novel F genome-specific mitochondrial genes” are involved in key biological functions in bivalve species with DUI. PMID:21556327

  13. Scorched mussels (Brachidontes spp., Bivalvia: Mytilidae) from the tropical and warm-temperate southwestern Atlantic: the role of the Amazon River in their speciation.

    PubMed

    Trovant, Berenice; Basso, Néstor G; Orensanz, José María; Lessa, Enrique P; Dincao, Fernando; Ruzzante, Daniel E

    2016-03-01

    Antitropicality is a distribution pattern where closely related taxa are separated by an intertropical latitudinal gap. Two potential examples include Brachidontes darwinianus (south eastern Brazil to Uruguay), considered by some authors as a synonym of B. exustus (Gulf of Mexico and the Caribbean), and B. solisianus, distributed along the Brazilian coast with dubious records north of the intertropical zone. Using two nuclear (18S and 28S rDNA) and one mitochondrial gene (mtDNA COI), we aimed to elucidate the phylogeographic and phylogenetic relationships among the scorched mussels present in the warm-temperate region of the southwest Atlantic. We evaluated a divergence process mediated by the tropical zone over alternative phylogeographic hypotheses. Brachidontes solisianus was closely related to B. exustus I, a species with which it exhibits an antitropical distribution. Their divergence time was approximately 2.6 Ma, consistent with the intensification of Amazon River flow. Brachidontes darwinianus, an estuarine species is shown here not to be related to this B. exustus complex. We suspect ancestral forms may have dispersed from the Caribbean to the Atlantic coast via the Trans-Amazonian seaway (Miocene). The third species, B rodriguezii is presumed to have a long history in the region with related fossil forms going back to the Miocene. Although scorched mussels are very similar in appearance, their evolutionary histories are very different, involving major historical contingencies as the formation of the Amazon River, the Panama Isthmus, and the last marine transgression. PMID:26929816

  14. Influence of antifouling paint on freshwater invertebrates (Mytilidae, Chironomidae and Naididae): density, richness and composition.

    PubMed

    Fujita, D S; Takeda, A M; Coutinho, R; Fernandes, F C

    2015-11-01

    We conducted a study about invertebrates on artificial substrates with different antifouling paints in order to answer the following questions 1) is there lower accumulation of organic matter on substrates with antifouling paints, 2) is invertebrate colonization influenced by the release of biocides from antifouling paints, 3) is the colonization of aquatic invertebrates positively influenced by the material accumulated upon the substrate surface and 4) is the assemblage composition of invertebrates similar among the different antifouling paints? To answer these questions, four structures were installed in the Baía River in February 1st, 2007. Each structure was composed of 7 wood boards: 5 boards painted with each type of antifouling paints (T1, T2, T3, T4 and T5), one painted only with the primer (Pr) and the other without any paint (Cn). After 365 days, we observed a greater accumulation of organic matter in the substrates with T2 and T3 paint coatings. Limnoperna fortunei was recorded in all tested paints, with higher densities in the control, primer, T2 and T3. The colonization of Chironomidae and Naididae on the substrate was positively influenced by L. fortunei density. The non-metric multidimensional scaling (NMDS) of the invertebrate community provided evidence of the clear distinction of invertebrate assemblages among the paints. Paints T2 and T3 were the most similar to the control and primer. Our results suggest that antifouling paints applied on substrates hinder invertebrate colonization by decreasing the density and richness of invertebrates. PMID:26628222

  15. Evaluation of a biomarker of Cd(II) exposure on Limnoperna fortunei.

    PubMed

    Mariano, Belaich; Cristian, Oliver; Marcela, Pilloff; Porta, Andrés

    2006-11-01

    The use of organisms to monitor contamination allows the access to information that cannot be acquired by chemical methods. Limnoperna fortunei, mussel frequently found in Río de la Plata estuary, fulfils the requirements to be used as a biomonitoring organism. In this work we report that a polypeptide of 22 kDa of molecular weight (LF22) is induced when L. fortunei is exposed to Cd (II), Cu(II) and Hg(II) sublethal levels. To characterize LF22, mussels were sampled from a non-polluted region and whole soft tissue was homogenized, with and without previous exposure to 100 microg/L of Cd(II). The cytosolic proteins were evaluated by mono and bidimensional SDS-PAGE, and size exclusion chromatography. All the methods showed that LF22 triples its concentration in presence of Cd(II). Purification of LF22 was achieved by fractioned precipitation, salting-out, ionic exchange and size exclusion chromatography. We conclude that LF22 is a useful biomarker of heavy metal exposure. PMID:16603290

  16. [Antimicrobial activity of the epicarp of the fruits of Paulownia fortunei and Paulownia tomentosa].

    PubMed

    Cercós, A P

    1982-01-01

    One antimicrobial substance was obtained from the epicarp of the fruits of Paulownia fortunei and Paulownia tomentosa. Other parts of the fruits and leaves had no detectable antimicrobial activity. The substance was active in vitro for Staphylococcus aureus and Bacillus subtilis while it had lower activity for Saccharomyces carlsbergensis and the lowest was for Escherichia coli. The active material was extracted with organic solvents (ether, ethanol and acetone). The activity "in vitro" was demonstrated by the method of dilution in nutrient agar media. The active substance looked as a resin and was insoluble in water at neutral or acid pH. It was very soluble in strong alkaline pH solution. PMID:6821518

  17. Amino Acid Sequence of Anionic Peroxidase from the Windmill Palm Tree Trachycarpus fortunei

    PubMed Central

    2015-01-01

    Palm peroxidases are extremely stable and have uncommon substrate specificity. This study was designed to fill in the knowledge gap about the structures of a peroxidase from the windmill palm tree Trachycarpus fortunei. The complete amino acid sequence and partial glycosylation were determined by MALDI-top-down sequencing of native windmill palm tree peroxidase (WPTP), MALDI-TOF/TOF MS/MS of WPTP tryptic peptides, and cDNA sequencing. The propeptide of WPTP contained N- and C-terminal signal sequences which contained 21 and 17 amino acid residues, respectively. Mature WPTP was 306 amino acids in length, and its carbohydrate content ranged from 21% to 29%. Comparison to closely related royal palm tree peroxidase revealed structural features that may explain differences in their substrate specificity. The results can be used to guide engineering of WPTP and its novel applications. PMID:25383699

  18. A New Oidiodendron maius Strain Isolated from Rhododendron fortunei and its Effects on Nitrogen Uptake and Plant Growth

    PubMed Central

    Wei, Xiangying; Chen, Jianjun; Zhang, Chunying; Pan, Dongming

    2016-01-01

    A new mycorrhizal fungal strain was isolated from hair roots of Rhododendron fortunei Lindl. grown in Huading Forest Park, Zhejiang Province, China. Morphological characterization and internal transcribed spacer rDNA analysis suggested that it belongs to Oidiodendron maius Barron, and we designated it as strain Om19. Methods for culturing Om19 were established, and the ability of Om19 to form mycorrhizae on R. fortunei was evaluated in a peat-based substrate. Microscopic observations showed hyaline hyphae on the surface of hair roots and crowded hyphal complexes (hyphal coils) inside root cortical cells of R. fortunei after inoculation, indicating that the roots were well colonized by Om19. In a second experiment, fresh and dry weight of R. fortunei 2 months after Om19 inoculation were greater than uninoculated plants, and the total nitrogen absorbed by plants inoculated with Om19 was greater than the uninoculated controls. qRT-PCR analysis of five genes related to N uptake and metabolism (two nitrate transporters, an ammonium transporter, glutamine synthetase, and glutamate synthase) showed that these genes were highly upregulated with twofold to ninefold greater expression in plants inoculated with Om19 compared to uninoculated plants. In the third experiment, Om19 was inoculated into the peat-based substrate for growing Formosa azalea (Rhododendron indica ‘Formosa’). ‘Formosa’ azalea plants grown in the inoculated substrate had larger canopies and root systems compared to uninoculated plants. Our results show that Om19 could be an important microbial tool for improving production of Rhododendron plants. PMID:27602030

  19. A New Oidiodendron maius Strain Isolated from Rhododendron fortunei and its Effects on Nitrogen Uptake and Plant Growth.

    PubMed

    Wei, Xiangying; Chen, Jianjun; Zhang, Chunying; Pan, Dongming

    2016-01-01

    A new mycorrhizal fungal strain was isolated from hair roots of Rhododendron fortunei Lindl. grown in Huading Forest Park, Zhejiang Province, China. Morphological characterization and internal transcribed spacer rDNA analysis suggested that it belongs to Oidiodendron maius Barron, and we designated it as strain Om19. Methods for culturing Om19 were established, and the ability of Om19 to form mycorrhizae on R. fortunei was evaluated in a peat-based substrate. Microscopic observations showed hyaline hyphae on the surface of hair roots and crowded hyphal complexes (hyphal coils) inside root cortical cells of R. fortunei after inoculation, indicating that the roots were well colonized by Om19. In a second experiment, fresh and dry weight of R. fortunei 2 months after Om19 inoculation were greater than uninoculated plants, and the total nitrogen absorbed by plants inoculated with Om19 was greater than the uninoculated controls. qRT-PCR analysis of five genes related to N uptake and metabolism (two nitrate transporters, an ammonium transporter, glutamine synthetase, and glutamate synthase) showed that these genes were highly upregulated with twofold to ninefold greater expression in plants inoculated with Om19 compared to uninoculated plants. In the third experiment, Om19 was inoculated into the peat-based substrate for growing Formosa azalea (Rhododendron indica 'Formosa'). 'Formosa' azalea plants grown in the inoculated substrate had larger canopies and root systems compared to uninoculated plants. Our results show that Om19 could be an important microbial tool for improving production of Rhododendron plants. PMID:27602030

  20. [Complex effects of simulated acid rain and Cu on the physiological characteristics of Paulownia fortunei and its detoxification mechanism].

    PubMed

    Wang, Jiang; Zhang, Chong-Bang; Ke, Shi-Sheng; Qian, Bao-Ying

    2010-03-01

    A pot experiment was conducted to study the effects of simulated acid rain (pH 4.0, 5.0) and Cu (0-200 mg x kg(-1)) on the physiological characteristics of Paulownia fortunei and its detoxification mechanism. With no Cu addition, the leaf chlorophyll, carotenoid, O2 division by, H2O2, and MDA contents of P. fortunei had no significant differences between the two acid rain treatments. However, with the addition of 100 and 200 mg Cu x kg(-1), the chlorophyll and carotenoid contents of treatment pH 4.0 were lower, while the O2 divided by, H2O2 and MDA contents were higher thanthose of treatment pH 5.0. The chlorophyll a/b ratio of treatments Cu was higher than that of the control. The leaf Cu content decreased obviously with the increasing acidity of stimulated acid rain, but the root Cu content was in reverse. With increasing Cu addition, both the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) and the total contents of phytochelatins (PCs) and glutathione (GSH) in treatment pH 5.0 increased, while the activities of SOD, POD, CAT and APX in treatment pH 4.0 decreased after an initial increase, and the total contents of glutathione (GSH) decreased greatly in treatment 200 mg Cu x kg(-1). All of these demonstrated that the oxidative stress of high Cu concentration to P. fortunei was aggravated by stimulated acid rain. PMID:20560310

  1. Active Constituents from Drynaria fortunei Rhizomes on the Attenuation of Aβ(25-35)-Induced Axonal Atrophy.

    PubMed

    Yang, Zhi-You; Kuboyama, Tomoharu; Kazuma, Kohei; Konno, Katsuhiro; Tohda, Chihiro

    2015-09-25

    Axonal regeneration might contribute to the restoration of damaged neuronal networks and improvement of memory deficits in a murine Alzheimer's disease (AD) model. A search for axonal regenerative drugs was performed to discover novel therapeutic options for AD. In this study, an aqueous extract of Drynaria fortunei rhizomes reversed Aβ25-35-induced axonal atrophy in cultured cortical neurons of mice. Bioassay-guided fractionation of this extract led to the isolation and identification of compounds 1-5. Among them, (2S)-neoeriocitrin (2) and caffeic acid 4-O-glucoside (4) showed significant axonal elongation effects on Aβ25-35-induced atrophy. PMID:26299900

  2. Titanium dioxide nanoparticles induce genotoxicity but not mutagenicity in golden mussel Limnoperna fortunei.

    PubMed

    Girardello, Francine; Custódio Leite, Camila; Vianna Villela, Izabel; da Silva Machado, Miriana; Luiz Mendes Juchem, André; Roesch-Ely, Mariana; Neves Fernandes, Andreia; Salvador, Mirian; Antonio Pêgas Henriques, João

    2016-01-01

    The widespread use of titanium dioxide nanoparticles (TiO2-NP) in consumer products is the cause of its appearance in wastewater and effluents, reaching the aquatic environment. The evaluation of the biological impact of TiO2-NP and the need to understand its ecotoxicological impact to the aquatic ecosystem are of major concern. Bivalve mollusks may represent a target group for nanoparticle toxicity. Limnoperna fortunei (golden mussel), a freshwater bivalve organism that has been employed in biomonitoring environmental conditions. Comet assay, micronucleus test and oxidative damage to lipids and proteins were performed after the golden mussel was exposed to TiO2-NP (1, 5, 10 and 50μgmL(-1)). The results demonstrate that TiO2-NP can damage the DNA of haemocytes after 2h of exposure and the genotoxic activity significantly increased after 4h exposure to TiO2-NP, at all the TiO2-NP concentrations. TiO2-NP was ineffective in causing mutagenicity in the haemolymph cells of golden mussel. The increase in the lipid peroxidation levels and carbonyl proteins after the exposure to TiO2-NP indicates the induction of oxidative stress at 2h exposure with similar results to all TiO2-NP concentrations, but these effects did not occur at 4h exposure. These results demonstrated that, although TiO2-NP is not mutagenic to golden mussel, it does induce DNA damage and oxidative stress in these organisms. PMID:26675368

  3. Antioxidant defences and haemocyte internalization in Limnoperna fortunei exposed to TiO2 nanoparticles.

    PubMed

    Girardello, Francine; Leite, Camila Custódio; Branco, Catia Santos; Roesch-Ely, Mariana; Fernandes, Andreia Neves; Salvador, Mirian; Henriques, João Antonio Pêgas

    2016-07-01

    TiO2 nanoparticles (TiO2-NP) have been incorporated into a large range of materials for different applications in the last decades and are very likely to appear in wastewater and effluents, eventually reaching the aquatic environment. Therefore, the assessment of the biological impact of TiO2-NP on aquatic ecosystem is of a major concern. The mussels represent a target group for TiO2-NP toxicity, as they are filter feeders and are capable of bioaccumulating toxic compounds. Furthermore, the exotic organism Limnoperna fortunei, golden mussel, is a freshwater bivalve that has been used in biomonitoring environmental conditions. In this work, the TiO2-NP's ability to interact with haemocytes of golden mussel was assessed by transmission electron microscopy. The enzymatic and non-enzymatic antioxidant defenses were evaluated by superoxide dismutase (Sod) and catalase (Cat) activities and protein sulfhydryl content, which were measured after the golden mussel was exposed to TiO2-NP (1, 5, 10 and 50μgmL(-1)). Results demonstrate that TiO2-NP was internalized by cells, causing alterations in haemocytes membrane. Antioxidant activity of Sod and Cat decreased after 2h TiO2-NP exposure. After 4h exposure, the enzymatic antioxidant activity was restored. Notably, the protein sulfhydryl content decreased after 2h to all the TiO2-NP concentrations and no alterations were observed after 4h of TiO2-NP exposure. These results demonstrate the potential of golden mussel as sentinel organism to TiO2-NP exposure. PMID:27152940

  4. Plant-Pathogen Interaction, Circadian Rhythm, and Hormone-Related Gene Expression Provide Indicators of Phytoplasma Infection in Paulownia fortunei

    PubMed Central

    Fan, Guoqiang; Dong, Yanpeng; Deng, Minjie; Zhao, Zhenli; Niu, Suyan; Xu, Enkai

    2014-01-01

    Phytoplasmas are mycoplasma-like pathogens of witches’ broom disease, and are responsible for serious yield losses of Paulownia trees worldwide. The molecular mechanisms of disease development in Paulownia are of considerable interest, but still poorly understood. Here, we have applied transcriptome sequencing technology and a de novo assembly approach to analyze gene expression profiles in Paulownia fortunei infected by phytoplasmas. Our previous researches suggested that methyl methane sulfonated (MMS) could reverse the effects of the infection. In this study, leaf samples from healthy, infected, and both infected and methyl methane sulfonate treated plants were analyzed. The results showed that the gene expression profile of P. fortunei underwent dramatic changes after Paulownia witches’ broom (PaWB) phytoplasma infection. Genes that encoded key enzymes in plant-pathogen interaction processes were significantly up-regulated in the PaWB-infected Paulownia. Genes involved in circadian rhythm and hormone-related genes were also altered in Paulownia after PaWB infection. However, after the PaWB-infected plants were treated with MMS, the expression profiles of these genes returned to the levels in the healthy controls. The data will help identify potential PaWB disease-resistance genes that could be targeted to inhibit the growth and reproduction of the pathogen and to increase plant resistance. PMID:25514414

  5. Transcriptome-wide profiling and expression analysis of diploid and autotetraploid Paulownia tomentosa × Paulownia fortunei under drought stress.

    PubMed

    Xu, Enkai; Fan, Guoqiang; Niu, Suyan; Zhao, Zhenli; Deng, Minjie; Dong, Yanpeng

    2014-01-01

    Paulownia is a fast-growing deciduous hardwood species native to China, which has high ecological and economic value. In an earlier study, we reported ploidy-dependent differences in Paulownia drought tolerance by the microscopic observations of the leaves. Autotetraploid Paulownia has a higher resistance to drought stress than their diploid relatives. In order to obtain genetic information on molecular mechanisms responses of Paulownia plants to drought, Illumina/Solexa Genome sequencing platform was used to de novo assemble the transcriptomes of leaves from diploid and autotetraploid Paulownia tomentosa × Paulownia fortunei seedlings (PTF2 and PTF4 respectively) grown under control conditions and under drought stress and obtained 98,671 nonredundant unigenes. A comparative transcriptome analysis revealed that hundreds of unigenes were predicted to be involved mainly in ROS-scavenging system, amino acid and carbohydrate metabolism, plant hormone biosynthesis and signal transduction, while these unigenes exhibited differential transcript alteration of the two accessions. This study provides a comprehensive map of how P. tomentosa × P. fortunei responds to drought stress at physiological and molecular levels, which may help in understanding the mechanisms involve in water-deficit response and will be useful for further study of drought tolerance in woody plants. PMID:25405758

  6. Effects of 254 nm UV irradiation on the mobility and survival of larvae of the invasive fouling mussel Limnoperna fortunei.

    PubMed

    Perepelizin, Pablo V; Boltovskoy, Demetrio

    2014-02-01

    In order to investigate the feasibility of using ultraviolet (UV) irradiation to prevent the invasive Asian mussel, Limnoperna fortunei, from colonizing components of the cooling systems of industrial and power plants, the mobility and mortality of its larvae were assessed after exposure to different doses of UVC (λ = 254 nm) in laboratory conditions. Total (100%) mortality was achieved with a dose of 149 mJ cm(-2) at 23 °C and 103 mJ cm(-2) at 25.8 °C. Immediately after exposure, larvae were alive but had reduced mobility. The proportion of active larvae increased after 24 h, but fell again at 48 and 72 h to levels similar to those immediately after exposure. The highest mortality rates were always recorded at the last observation, 72 h after exposure. These results indicate that the larvae of L. fortunei are highly sensitive to UVC, suggesting that UV irradiation has the potential to control fouling by this mussel when the water is relatively clear. However, application of UV-based technologies in plants that use cooling water from water bodies with high loads of suspended solids (eg the Paraná-Uruguay basin, with ca 160 mg l(-1) of suspended solids and absorbance values around 0.255) is unlikely to be effective without prior filtration of the water. PMID:24404869

  7. Transcriptome-Wide Profiling and Expression Analysis of Diploid and Autotetraploid Paulownia tomentosa × Paulownia fortunei under Drought Stress

    PubMed Central

    Xu, Enkai; Fan, Guoqiang; Niu, Suyan; Zhao, Zhenli; Deng, Minjie; Dong, Yanpeng

    2014-01-01

    Paulownia is a fast-growing deciduous hardwood species native to China, which has high ecological and economic value. In an earlier study, we reported ploidy-dependent differences in Paulownia drought tolerance by the microscopic observations of the leaves. Autotetraploid Paulownia has a higher resistance to drought stress than their diploid relatives. In order to obtain genetic information on molecular mechanisms responses of Paulownia plants to drought, Illumina/Solexa Genome sequencing platform was used to de novo assemble the transcriptomes of leaves from diploid and autotetraploid Paulownia tomentosa × Paulownia fortunei seedlings (PTF2 and PTF4 respectively) grown under control conditions and under drought stress and obtained 98,671 nonredundant unigenes. A comparative transcriptome analysis revealed that hundreds of unigenes were predicted to be involved mainly in ROS-scavenging system, amino acid and carbohydrate metabolism, plant hormone biosynthesis and signal transduction, while these unigenes exhibited differential transcript alteration of the two accessions. This study provides a comprehensive map of how P. tomentosa × P. fortunei responds to drought stress at physiological and molecular levels, which may help in understanding the mechanisms involve in water-deficit response and will be useful for further study of drought tolerance in woody plants. PMID:25405758

  8. Plant-pathogen interaction, circadian rhythm, and hormone-related gene expression provide indicators of phytoplasma infection in Paulownia fortunei.

    PubMed

    Fan, Guoqiang; Dong, Yanpeng; Deng, Minjie; Zhao, Zhenli; Niu, Suyan; Xu, Enkai

    2014-01-01

    Phytoplasmas are mycoplasma-like pathogens of witches' broom disease, and are responsible for serious yield losses of Paulownia trees worldwide. The molecular mechanisms of disease development in Paulownia are of considerable interest, but still poorly understood. Here, we have applied transcriptome sequencing technology and a de novo assembly approach to analyze gene expression profiles in Paulownia fortunei infected by phytoplasmas. Our previous researches suggested that methyl methane sulfonated (MMS) could reverse the effects of the infection. In this study, leaf samples from healthy, infected, and both infected and methyl methane sulfonate treated plants were analyzed. The results showed that the gene expression profile of P. fortunei underwent dramatic changes after Paulownia witches' broom (PaWB) phytoplasma infection. Genes that encoded key enzymes in plant-pathogen interaction processes were significantly up-regulated in the PaWB-infected Paulownia. Genes involved in circadian rhythm and hormone-related genes were also altered in Paulownia after PaWB infection. However, after the PaWB-infected plants were treated with MMS, the expression profiles of these genes returned to the levels in the healthy controls. The data will help identify potential PaWB disease-resistance genes that could be targeted to inhibit the growth and reproduction of the pathogen and to increase plant resistance. PMID:25514414

  9. Improving sustainability in the remediation of contaminated soils by the use of compost and energy valorization by Paulownia fortunei.

    PubMed

    Madejón, Paula; Domínguez, María Teresa; Díaz, Manuel Jesús; Madejón, Engracia

    2016-01-01

    The plantation of fast growing trees in contaminated sites, in combination with the use of organic wastes, could partially solve a dual environmental problem: the disposal of these wastes and the improvement of soil quality in these degraded soils. This study evaluated the effects of two compost on the quantity and quality of Paulownia fortunei biomass and on syngas production by biomass gasification, produced by plants growing on trace elements contaminated soils. Compost increased biomass production to values similar to those produced in non-contaminated soils, due to the improvement in plant nutritional status. Moreover, biomass quality for gasification was increased by compost addition. Trace element accumulation in the biomass was relatively low and not related to biomass production or the gas quality obtained through gasification. Thus, P. fortunei plantations could pose an opportunity to improve the economic balance of the revegetation of contaminated soils, given that other commercial uses such as food or fodder crop production is not recommended in these soils. PMID:26372943

  10. Identification of microRNAs and their targets in Paulownia fortunei plants free from phytoplasma pathogen after methyl methane sulfonate treatment.

    PubMed

    Fan, Guoqiang; Niu, Suyan; Zhao, Zhenli; Deng, Minjie; Xu, Enkai; Wang, Yuanlong; Yang, Lu

    2016-08-01

    MicroRNAs (miRNAs) play major roles in plant responses to various biotic and abiotic stresses by regulating gene expression at the transcriptional and post-transcriptional levels. Paulownia witches' broom (PaWB) disease caused by phytoplasmas reduces Paulownia production worldwide. In this study, we investigated the miRNA-mediated plant response to PaWB phytoplasma by Illumina sequencing and degradome analysis of Paulownia fortunei small RNAs (sRNAs). The sRNA and degradome libraries were constructed from healthy and diseased P. fortunei plants and the plants free from phytoplasma pathogen after 60 mg L(-1) methyl methane sulfonate treatment. A total of 96 P. fortunei-conserved miRNAs and 83 putative novel miRNAs were identified. Among them, 37 miRNAs (17 conserved, 20 novel) were found to be differentially expressed in response to PaWB phytoplasma infection. In addition, 114 target genes for 18 of the conserved miRNA families and 33 target genes for 15 of the novel miRNAs in P. fortunei were detected. The expression patterns of 14 of the PaWB phytoplasma-responsive miRNAs and 12 target genes were determined by quantitative real-time polymerase chain reaction (qPCR) experiments. A functional analysis of the miRNA targets indicated that these targeted genes may regulate transcription, stress response, nitrogen metabolism, and various other activities. Our results will help identify the potential roles of miRNAs involved in protecting P. fortunei from diseases. PMID:27328782

  11. A phylogenetic backbone for Bivalvia: an RNA-seq approach

    PubMed Central

    González, Vanessa L.; Andrade, Sónia C. S.; Bieler, Rüdiger; Collins, Timothy M.; Dunn, Casey W.; Mikkelsen, Paula M.; Taylor, John D.; Giribet, Gonzalo

    2015-01-01

    Bivalves are an ancient and ubiquitous group of aquatic invertebrates with an estimated 10 000–20 000 living species. They are economically significant as a human food source, and ecologically important given their biomass and effects on communities. Their phylogenetic relationships have been studied for decades, and their unparalleled fossil record extends from the Cambrian to the Recent. Nevertheless, a robustly supported phylogeny of the deepest nodes, needed to fully exploit the bivalves as a model for testing macroevolutionary theories, is lacking. Here, we present the first phylogenomic approach for this important group of molluscs, including novel transcriptomic data for 31 bivalves obtained through an RNA-seq approach, and analyse these data with published genomes and transcriptomes of other bivalves plus outgroups. Our results provide a well-resolved, robust phylogenetic backbone for Bivalvia with all major lineages delineated, addressing long-standing questions about the monophyly of Protobranchia and Heterodonta, and resolving the position of particular groups such as Palaeoheterodonta, Archiheterodonta and Anomalodesmata. This now fully resolved backbone demonstrates that genomic approaches using hundreds of genes are feasible for resolving phylogenetic questions in bivalves and other animals. PMID:25589608

  12. Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts

    PubMed Central

    Newton, Irene LG; Girguis, Peter R; Cavanaugh, Colleen M

    2008-01-01

    Background The Vesicomyidae (Bivalvia: Mollusca) are a family of clams that form symbioses with chemosynthetic gamma-proteobacteria. They exist in environments such as hydrothermal vents and cold seeps and have a reduced gut and feeding groove, indicating a large dependence on their endosymbionts for nutrition. Recently, two vesicomyid symbiont genomes were sequenced, illuminating the possible nutritional contributions of the symbiont to the host and making genome-wide evolutionary analyses possible. Results To examine the genomic evolution of the vesicomyid symbionts, a comparative genomics framework, including the existing genomic data combined with heterologous microarray hybridization results, was used to analyze conserved gene content in four vesicomyid symbiont genomes. These four symbionts were chosen to include a broad phylogenetic sampling of the vesicomyid symbionts and represent distinct chemosynthetic environments: cold seeps and hydrothermal vents. Conclusion The results of this comparative genomics analysis emphasize the importance of the symbionts' chemoautotrophic metabolism within their hosts. The fact that these symbionts appear to be metabolically capable autotrophs underscores the extent to which the host depends on them for nutrition and reveals the key to invertebrate colonization of these challenging environments. PMID:19055818

  13. A phylogenetic backbone for Bivalvia: an RNA-seq approach.

    PubMed

    González, Vanessa L; Andrade, Sónia C S; Bieler, Rüdiger; Collins, Timothy M; Dunn, Casey W; Mikkelsen, Paula M; Taylor, John D; Giribet, Gonzalo

    2015-02-22

    Bivalves are an ancient and ubiquitous group of aquatic invertebrates with an estimated 10 000-20 000 living species. They are economically significant as a human food source, and ecologically important given their biomass and effects on communities. Their phylogenetic relationships have been studied for decades, and their unparalleled fossil record extends from the Cambrian to the Recent. Nevertheless, a robustly supported phylogeny of the deepest nodes, needed to fully exploit the bivalves as a model for testing macroevolutionary theories, is lacking. Here, we present the first phylogenomic approach for this important group of molluscs, including novel transcriptomic data for 31 bivalves obtained through an RNA-seq approach, and analyse these data with published genomes and transcriptomes of other bivalves plus outgroups. Our results provide a well-resolved, robust phylogenetic backbone for Bivalvia with all major lineages delineated, addressing long-standing questions about the monophyly of Protobranchia and Heterodonta, and resolving the position of particular groups such as Palaeoheterodonta, Archiheterodonta and Anomalodesmata. This now fully resolved backbone demonstrates that genomic approaches using hundreds of genes are feasible for resolving phylogenetic questions in bivalves and other animals. PMID:25589608

  14. Algae consumption and nitrate removal in a raw water transport system by Limnoperna fortunei and its associated microorganisms.

    PubMed

    Zhang, Ruijian; Cui, Bin; Huang, Shaobin

    2014-12-01

    This laboratory-scale study investigated the effect of Limnoperna fortunei on chlorophyll a, phosphates, ammonia, and nitrates in a simulated raw water transport system, with a special focus on the isolation and identification of microbes in the biofilm attached to the shell surface. These microbes appear to be involved in the decreased concentration of nitrates observed in the water. The microbial communities in the raw water and on the surface of the mussel's shell were investigated through various methods, including a 16S rRNA phylogenetic analysis, which revealed significant diversity in terms of the structure and abundance of microbial species present. Two aerobic denitrifying bacteria (I-N38 and I-N45) were identified in shell biofilm that were capable of removing 95.5 and 100% of nitrates, respectively, within 24 hours. PMID:25654932

  15. Impact of multiple anthropogenic stressors on freshwater: how do glyphosate and the invasive mussel Limnoperna fortunei affect microbial communities and water quality?

    PubMed

    Pizarro, Haydée; Di Fiori, Eugenia; Sinistro, Rodrigo; Ramírez, Marina; Rodríguez, Patricia; Vinocur, Alicia; Cataldo, Daniel

    2016-01-01

    The study of the joint effect of multiple anthropogenic stressors is important because the emerging consequences are often unpredictable on the basis of knowledge of single effects. We explored the joint impact of glyphosate and the invasive golden mussel Limnoperna fortunei on freshwater phytoplankton, bacterioplankton and periphyton, and on the physical and chemical properties of the water. We manipulated both stressors simultaneously in a 25-day experiment using outdoor mesocosms; we assayed technical-grade glyphosate acid at four concentrations: 0, 1, 3 and 6 mg gly L(−1) under scenarios with and without mussels. The addition of the glyphosate significantly increased total phosphorus according to the concentration used; the high clearance rate of L. fortunei significantly decreased phytoplanktonic abundance leading to low values of turbidity. The mussel significantly stimulated the development of filamentous green algae (metaphyton). Interestingly, the combined effect revealed that L. fortunei accelerated the dissipation of glyphosate, which showed a 4-fold decrease in its half-life; this promoted the rapid bioavailability of glyphosate-derived phosphorus in the water. The interaction had a synergistic effect on soluble reactive phosphorus concentrations and was directly dependent on the concentration of glyphosate. A synergistic effect was also observed on bacterioplankton, water turbidity and metaphyton, thus inducing enhanced and rapid eutrophication. The ability of mussels to reduce glyphosate in water may be valued as positive, but our results allow us to predict that the invasion of Limnoperna fortunei in natural freshwater systems contaminated by glyphosate will accelerate the negative impact of the herbicide associated with eutrophication. PMID:26467805

  16. Biochemical response of the mussel Mytilus coruscus (Mytiloida: Mytilidae) exposed to in vivo sub-lethal copper concentrations

    NASA Astrophysics Data System (ADS)

    Li, Yifeng; Gu, Zhongqi; Liu, Hong; Shen, Heding; Yang, Jinglong

    2012-09-01

    Many aquatic organisms are negatively affected by exposure to high copper concentrations. We investigated the biochemical response of the mussel Mytilus coruscus (Mytiloida: Mytilidae) to copper exposure. In vivo bioassays using M. coruscus and different copper concentrations were conducted. The activity of six biomarkers, namely superoxide dismutase (SOD), catalase (CAT), acid phosphatase (ACP), alkaline phosphatase (AKP), glutamic-oxaloacetic transaminase (GOT) and glutamic-pyruvic transaminase (GPT) were measured. Survival rates decreased with increased copper concentrations and exposure times. The LC50 values at 48, 72, and 96 h exposure were 0.48, 0.37, and 0.32 mg/L, respectively. Within digestive glands, CAT activity increased with increasing Cu concentrations. The activity of AKP showed no significant change, while the remaining four enzymes showed decreasing activity with increasing Cu concentrations. Within the gills, AKP activity increased when the Cu concentration was 0.05 mg/L, but showed no significant changes at higher concentrations. Activity of CAT and ACP within gills tended to decrease with increasing Cu concentration. The activity of SOD and GPT decreased at an exposure concentration of 0.2 mg/L. GOT activity within gills decreased at 0.1 mg/L and increased at an exposure concentration of 0.2 mg/L. Within the adductor muscle, AKP activity increased at 0.05 mg/L but did not change at higher exposure concentrations. ACP activity within adductor muscle tissue showed no change, while activities of CAT, GOT and GPT decreased with increasing Cu concentrations. SOD activity within the adductor muscle tissue significantly decreased at the 0.02, 0.05 and 0.2 mg/L exposure concentrations. Our results show tissue specific differences for the six biomarkers in for M. coruscus. Our findings provide the basis for the establishment of reference activity levels against which biomarker changes can be estimated, and are essential preliminary steps in development

  17. Discovery of Genes Related to Witches Broom Disease in Paulownia tomentosa × Paulownia fortunei by a De Novo Assembled Transcriptome

    PubMed Central

    Liu, Rongning; Dong, Yanpeng; Fan, Guoqiang; Zhao, Zhenli; Deng, Minjie; Cao, Xibing; Niu, Suyan

    2013-01-01

    In spite of its economic importance, very little molecular genetics and genomic research has been targeted at the family Paulownia spp. The little genetic information on this plant is a big obstacle to studying the mechanisms of its ability to resist Paulownia Witches’ Broom (PaWB) disease. Analysis of the Paulownia transcriptome and its expression profile data are essential to extending the genetic resources on this species, thus will greatly improves our studies on Paulownia. In the current study, we performed the de novo assembly of a transcriptome on P. tomentosa × P. fortunei using the short-read sequencing technology (Illumina). 203,664 unigenes with a mean length of 1,328 bp was obtained. Of these unigenes, 32,976 (30% of all unigenes) containing complete structures were chosen. Eukaryotic clusters of orthologous groups, gene orthology, and the Kyoto Encyclopedia of Genes and Genomes annotations were performed of these unigenes. Genes related to PaWB disease resistance were analyzed in detail. To our knowledge, this is the first study to elucidate the genetic makeup of Paulownia. This transcriptome provides a quick way to understanding Paulownia, increases the number of gene sequences available for further functional genomics studies and provides clues to the identification of potential PaWB disease resistance genes. This study has provided a comprehensive insight into gene expression profiles at different states, which facilitates the study of each gene’s roles in the developmental process and in PaWB disease resistance. PMID:24278262

  18. Discovery of genes related to witches broom disease in Paulownia tomentosa × Paulownia fortunei by a De Novo assembled transcriptome.

    PubMed

    Liu, Rongning; Dong, Yanpeng; Fan, Guoqiang; Zhao, Zhenli; Deng, Minjie; Cao, Xibing; Niu, Suyan

    2013-01-01

    In spite of its economic importance, very little molecular genetics and genomic research has been targeted at the family Paulownia spp. The little genetic information on this plant is a big obstacle to studying the mechanisms of its ability to resist Paulownia Witches' Broom (PaWB) disease. Analysis of the Paulownia transcriptome and its expression profile data are essential to extending the genetic resources on this species, thus will greatly improves our studies on Paulownia. In the current study, we performed the de novo assembly of a transcriptome on P. tomentosa × P. fortunei using the short-read sequencing technology (Illumina). 203,664 unigenes with a mean length of 1,328 bp was obtained. Of these unigenes, 32,976 (30% of all unigenes) containing complete structures were chosen. Eukaryotic clusters of orthologous groups, gene orthology, and the Kyoto Encyclopedia of Genes and Genomes annotations were performed of these unigenes. Genes related to PaWB disease resistance were analyzed in detail. To our knowledge, this is the first study to elucidate the genetic makeup of Paulownia. This transcriptome provides a quick way to understanding Paulownia, increases the number of gene sequences available for further functional genomics studies and provides clues to the identification of potential PaWB disease resistance genes. This study has provided a comprehensive insight into gene expression profiles at different states, which facilitates the study of each gene's roles in the developmental process and in PaWB disease resistance. PMID:24278262

  19. Modeling the potential distribution of the invasive golden mussel Limnoperna fortunei in the Upper Paraguay River system using limnological variables.

    PubMed

    Oliveira, M D; Hamilton, S K; Calheiros, D F; Jacobi, C M; Latini, R O

    2010-10-01

    The invasive golden mussel, Limnoperna fortunei (Dunker, 1857), was introduced into the La Plata River estuary and quickly expanded upstream to the North, into the Paraguay and Paraná rivers. An ecological niche modeling approach, based on limnological variables, was used to predict the expansion of the golden mussel in the Paraguay River and its tributaries. We used three approaches to predict the geographic distribution: 1) the spatial distribution of calcium concentration and the saturation index for calcium carbonate (calcite); 2) the Genetic Algorithm for Rule-Set Production (GARP) model; and the 3) Maximum Entropy Method (Maxent) model. Other limnological variables such as temperature, dissolved oxygen, pH, and Total Suspended Solids (TSS) were used in the latter two cases. Important tributaries of the Paraguay River such as the Cuiabá and Miranda/Aquidauana rivers exhibit high risk of invasion, while lower risk was observed in the chemically dilute waters of the middle basin where shell calcification may be limited by low calcium concentrations and carbonate mineral undersaturation. PMID:21085788

  20. Rare earth elements in mussel shells of the Mytilidae family as tracers for hidden and fossil high-temperature hydrothermal systems

    NASA Astrophysics Data System (ADS)

    Bau, Michael; Balan, Simona; Schmidt, Katja; Koschinsky, Andrea

    2010-11-01

    Bathymodiolus mussels of the Mytilidae family live in ecological niches at marine vent sites where hydrothermal fluids discharge at the seafloor and mix with ambient seawater. We report the first concentration data for rare earth elements and yttrium (REY) of Bathymodiolus shells and of low-temperature diffuse hydrothermal fluids venting in their respective habitat at three hydrothermal vent fields along the Mid-Atlantic Ridge (MAR) and for littoral Mytilus edulis shells from the western North Atlantic, Dingle Bay, Ireland, and from the southern North Sea, German Bight, Germany. Similar to high-temperature hydrothermal solutions expelled in the respective area, the low-temperature diffuse fluids from the hydrothermal vent sites display positive Eu anomalies. These indicate that the fluids carry a component previously involved in high-temperature water-rock interaction, as decoupling of Eu from neighbouring REY requires temperatures above about 200 °C. While the Bathymodiolus shells from the hydrothermal vent fields reflect these positive Eu anomalies, the littoral M. edulis shells studied for comparison, do not show Eu anomalies, consistent with the lack of any high-temperature hydrothermal activity in their coastal environments. Shells of mussels of the Mytilidae family, such as Bathymodiolus and M. edulis, therefore, are archives whose REY distribution can be used as a proxy for the Eu anomaly of the waters in which the mussels grew. Although the Ca carbonate of a mussel shell is precipitated from the extrapallial fluid of the mussel and not directly from seawater, the Eu/Eu* ratio of seawater is not significantly modified under the low-temperature conditions prevailing during vital processes and biomineralization. This allows one to use the positive Eu anomalies in the REY distribution patterns of Bathymodiolus shells as a tracer for hidden or fossil high-temperature hydrothermal systems where other indicators of high-temperature hydrothermalism are not

  1. Bathymetric distribution patterns of Southern Ocean macrofaunal taxa: Bivalvia, Gastropoda, Isopoda and Polychaeta

    NASA Astrophysics Data System (ADS)

    Brandt, Angelika; Linse, Katrin; Schüller, Myriam

    2009-11-01

    The aim of this study is to compare the depth distributions of four major Southern Ocean macrobenthic epi- and infaunal taxa, the Bivalvia, Gastropoda, Isopoda, and Polychaeta, from subtidal to abyssal depth. All literature data up to summer 2008, as well as the unpublished data from the most recent ANDEEP I-III (Antarctic benthic deep-sea biodiversity: colonisation history and recent community patterns) expeditions to the Southern Ocean deep sea are included in the analysis. Benthic invertebrates in the Southern Ocean are known for their wide bathymetric ranges. We analysed the distributions of four of the most abundant and species-rich taxa from intertidal to abyssal (5200 m) depths in depth zones of 100 m. The depth distributions of three macrofaunal classes (Bivalvia, Gastropoda, Polychaeta) and one order (Isopoda) showed distinct differences. In the case of bivalves, gastropods and polychaetes, the number of species per depth zone decreased from the shelf to the slope at around 1000 m depth and then showed stable low numbers. The isopods showed the opposite trend; they were less species rich in the upper 1000 m but increased in species numbers from the slope to bathyal and abyssal depths. Depth ranges of families of the studied taxa (Bivalvia: 31 families, Gastropoda: 60, Isopoda: 32, and Polychaeta: 46 families) were compiled and illustrated. At present vast areas of the deep sea in the Southern Ocean remain unexplored and species accumulation curves showed that only a fraction of the species have been discovered to date. We anticipate that further investigations will greatly increase the number of species known in the Southern Ocean deep sea.

  2. [Are the contours of the frontal section of shell valves in Bivalvia specific?].

    PubMed

    Voroshilova, I S

    2013-01-01

    The diagnostic importance of the character of curvature of the frontal section of shell valves in Bivalvia on the basis of determining the constant angle of the logarithmic spiral is discussed. The contours of the frontal section of shell valves in several species of mollusks of the families Margaritiferidae and Sphaeriidae have been analyzed. It is shown that in different species of the family Sphaeriidae, the values of constant angles coincide. While performing graphic constructions, it was established that the contours of the frontal section of all studied species of pearl mussels and some spheriids do not correspond to the segment of the logarithmic spiral. It was noted that the hypothesis of the species specificity of this character was not confirmed; therefore, the curvature of the frontal section of shell valves cannot be used as the main character for the systematics and species identification of bivalves. PMID:24171313

  3. Spermatozoa and spermatogenesis in the northern quahaug Mercenaria mercenaria (Mollusca, Bivalvia)

    NASA Astrophysics Data System (ADS)

    Ying, Xue-Ping; Yang, Wan-Xi; Dahms, Hans-U.; Lin, Zhihua; Chai, Xueliang

    2008-12-01

    We studied the ultrastructure of spermatogenesis and spermatozoa in the northern quahaug, the clam Mercenaria mercenaria. Spermatogenetic cells gradually elongate. Mitochondria gradually fuse and increase in size and electron density. During spermatid differentiation, proacrosomal vesicles migrate towards the presumptive anterior pole of the nucleus and eventually form the acrosome. The spermatozoon of M. mercenaria is of a primitive type. It is composed of head, mid-piece, and tail. The acrosome shows a subacrosomal space with a short conical contour. The slightly curved nucleus of the spermatozoon contains fine-grained dense chromatin. The middle piece consists of a centriolar complex which is surrounded by four mitochondria. The flagellum has a standard “9 + 2” microtubular structure. The ultrastructure of spermatozoa and spermatogenesis of M. mercenaria shares a number of features with other species of the family Veneridae. M. mercenaria may be a suitable model species for further investigations into the mechanisms of spermatogenesis in the Bivalvia.

  4. First report of Perkinsus beihaiensis in wild clams Anomalocardia brasiliana (Bivalvia: Veneridae) in Brazil.

    PubMed

    Pinho Ferreira, Liana; Sabry, Rachel Costa; da Silva, Patrícia Mirella; Gesteira, Tereza Cristina Vasconcelos; de Souza Romão, Lidiane; Paz, Marcela Pinheiro; Feijó, Rubens Galdino; Neto, Maximiano Pinheiro Dantas; Maggioni, Rodrigo

    2015-03-01

    This is the first report of Perkinsus sp. (Bivalvia: Veneridae) infecting wild clams of the species Anomalocardia brasiliana in Brazil. The gill lamellae and rectum of 150 specimens of A. brasiliana collected in the Timonha river estuary (Ceará, Northeastern Brazil) in March 2012 were incubated in Ray's fluid thioglycollate medium (RFTM) for detection of Perkinsus sp. In RFTM, the prevalence of Perkinsus sp. was 14.7% (22/150) and the intensity of infection ranged from very light (1-10 cells across the slide) to light (12-100 cells). The presence of Perkinsus sp. was confirmed by PCR in seven (31.8%) out of 22 RFTM-positive specimens. DNA sequencing confirmed the presence of the genus Perkinsus and the phylogenetic analysis strongly indicated Perkinsus beihaiensis as the species responsible for the infection. PMID:25088443

  5. The Rho GTPase Family Genes in Bivalvia Genomes: Sequence, Evolution and Expression Analysis

    PubMed Central

    Li, Xue; Wang, Ruijia; Xun, Xiaogang; Jiao, Wenqian; Zhang, Mengran; Wang, Shuyue; Wang, Shi; Zhang, Lingling; Huang, Xiaoting; Hu, Xiaoli; Bao, Zhenmin

    2015-01-01

    Background Rho GTPases are important members of the Ras superfamily, which represents the largest signaling protein family in eukaryotes, and function as key molecular switches in converting and amplifying external signals into cellular responses. Although numerous analyses of Rho family genes have been reported, including their functions and evolution, a systematic analysis of this family has not been performed in Mollusca or in Bivalvia, one of the most important classes of Mollusca. Results In this study, we systematically identified and characterized a total set (Rho, Rac, Mig, Cdc42, Tc10, Rnd, RhoU, RhoBTB and Miro) of thirty Rho GTPase genes in three bivalve species, including nine in the Yesso scallop Patinopecten yessoensis, nine in the Zhikong scallop Chlamys farreri, and twelve in the Pacific oyster Crassostrea gigas. Phylogenetic analysis and interspecies comparison indicated that bivalves might possess the most complete types of Rho genes in invertebrates. A multiple RNA-seq dataset was used to investigate the expression profiles of bivalve Rho genes, revealing that the examined scallops share more similar Rho expression patterns than the oyster, whereas more Rho mRNAs are expressed in C. farreri and C. gigas than in P. yessoensis. Additionally, Rho, Rac and Cdc42 were found to be duplicated in the oyster but not in the scallops. Among the expanded Rho genes of C. gigas, duplication pairs with high synonymous substitution rates (Ks) displayed greater differences in expression. Conclusion A comprehensive analysis of bivalve Rho GTPase family genes was performed in scallop and oyster species, and Rho genes in bivalves exhibit greater conservation than those in any other invertebrate. This is the first study focusing on a genome-wide characterization of Rho GTPase genes in bivalves, and the findings will provide a valuable resource for a better understanding of Rho evolution and Rho GTPase function in Bivalvia. PMID:26633655

  6. [Latin American malacology. Freshwater mollusks from Argentina].

    PubMed

    Rumi, Alejandra; Gregoric, Diego E Gutiérrez; Núñez, Verónica; Darrigran, Gustavo A

    2008-03-01

    . Species of sanitary interest are the propagators of: schistosomiasis -Biomphalaria peregrina, B. straminea y B. tenagophila, Planorbidae-, fasciolasis -Lymnaea viatrix and L. columnella, Lymnaeidae- and dermatitis -Chilina gibbosa and C. fluminea, Chilinidae. Invasive species are: Corbicula fluminea (Corbiculidae) and Limnoperna fortunei (Mytilidae). The construction of new areas for the protection and conservation of the high risk endemic species of freshwater molluscs is a priority. It is necessary to give special attention to the species of the patagonic mountain range and of the mesopotamic area of the Del Plata Basin. PMID:18624229

  7. New records and a new species of bivalve (Mollusca: Bivalvia) from Miocene hydrocarbon seep deposits, North Island, New Zealand.

    PubMed

    Saether, Kristian P; Jingeng, Sha; Little, Crispin T S; Campbell, Kathleen A

    2016-01-01

    Fourteen bivalve taxa belonging to 11 families are present in at least 13 early to middle Miocene hydrocarbon seep deposits in the East Coast Basin, North Island, New Zealand. Among these are at least three new species, one of which, Semeloidea (s. l.) bexhavenensis sp. nov. (Lasaeidae), is described here. New distribution data are recorded for bivalve species in the families Limidae, Propeamussiidae, Malleidae and Solemyidae. Additional morphological details of Gigantidas coseli (Mytilidae) and Pratulum quinarium (Cardiidae) are provided based upon previously unrecorded internal shell features. Palaeoecological analysis indicates that bivalves utilized a broad range of modes of life and niches within the New Zealand Miocene seep environment, and no more than ca. 30% of these bivalve species were likely to have been obligate to seeps. PMID:27615822

  8. The histopathology of the infection of Tilapia rendalli and Hypostomus regani (Osteichthyes) by lasidium larvae of Anodontites trapesialis (Mollusca, Bivalvia).

    PubMed

    Silva-Souza, Angela Teresa; Eiras, Jorge C

    2002-04-01

    It is described the histopathology of the infection of Tilapia rendalli (Osteichthyes, Perciformes, Cichlidae) and Hypostomus regani (Osteichthyes, Siluriformes, Loricariidae) by lasidium larvae of Anodontites trapesialis (Mollusca, Bivalvia, Mycetopodidae). The larvae were encysted within the epidermis of the host, being surrounded by a thin hyaline membrane, 3-6 microm thick, of parasite origin. A proliferative host cell reaction did not occur. The histopathology of the infection shows that the lesions induced by the parasites are minimal. However, the numerous small lesions produced by the release of the larvae may provide optimal conditions for the infection by opportunistic pathogens, namely fungus, which may eventually cause the death of the host. PMID:12048579

  9. Nanoindentations on conch shells of Gastropoda and Bivalvia molluscs reveal anisotropic evolution against external attacks.

    PubMed

    Bignardi, Cristina; Petraroli, Michele; Pugno, Nicola M

    2010-10-01

    Nanoindentation method has been used to explore, at the nanoscale, the mechanical properties of four different representative types of conch shells belonging to the two biggest classes of molluscs, Gastropoda and Bivalvia, in order to compare nanohardness and Young's modulus with respect to the microstructural anisotropic architectures. For the experimental tests a Nano Indenter XP (MTS Nano Instruments, Oak Ridge TN) has been used. The mechanical tests have been carried out on the inner and outer surfaces of the shells, as well as on their cross-section, near to the inner/outer surfaces and in the middle layer. The results confirm the three layered anisotropic architecture of the investigated conchs. On each of these 5 surfaces, 2 x 5 indentations have been performed at different maximum depth: from 250 nm to 4 microm, with a step of 250 nm, for a total of 3200 tests. The numerous observations have been analysed applying an ad hoc modification of the Weibull Statistics, suggesting a natural evolution of the shells against external attacks. PMID:21137746

  10. Systematics and distribution of Cristaria plicata (Bivalvia, Unionidae) from the Russian Far East

    PubMed Central

    Klishko, Olga K.; Lopes-Lima, Manuel; Froufe, Elsa; Bogan, Arthur E.; Abakumova, Vera Y.

    2016-01-01

    Abstract The number of anodontine bivalve species placed in the genus Cristaria (Bivalvia, Unionidae) from the Russian Far East is still not stable among authors. Some recognize only one valid species Cristaria plicata (Leach, 1815) while others accept two additional species, Cristaria tuberculata Schumacher, 1817 and Cristaria herculea (Middendorff, 1847). In the present study, these taxonomic doubts are addressed using analyses of mitochondrial DNA sequences and shell morphometry. No significant differences have been revealed by the COI DNA sequences or the main statistical morphometric indices from the three Cristaria forms. In the specimens analysed, changes in shell morphometry with age suggest that original descriptions of the different forms may be attributed solely to differences in age and sex. We consider that Cristaria plicata, Cristaria tuberculata and Cristaria herculea from the Russian Far East should be considered as a single species, namely Cristaria plicata (Leach, 1815), with Cristaria tuberculata and Cristaria herculea as junior synonyms. The geographic range of Cristaria plicata and its conservation status are also presented here. PMID:27110206

  11. Systematics and distribution of Cristaria plicata (Bivalvia, Unionidae) from the Russian Far East.

    PubMed

    Klishko, Olga K; Lopes-Lima, Manuel; Froufe, Elsa; Bogan, Arthur E; Abakumova, Vera Y

    2016-01-01

    The number of anodontine bivalve species placed in the genus Cristaria (Bivalvia, Unionidae) from the Russian Far East is still not stable among authors. Some recognize only one valid species Cristaria plicata (Leach, 1815) while others accept two additional species, Cristaria tuberculata Schumacher, 1817 and Cristaria herculea (Middendorff, 1847). In the present study, these taxonomic doubts are addressed using analyses of mitochondrial DNA sequences and shell morphometry. No significant differences have been revealed by the COI DNA sequences or the main statistical morphometric indices from the three Cristaria forms. In the specimens analysed, changes in shell morphometry with age suggest that original descriptions of the different forms may be attributed solely to differences in age and sex. We consider that Cristaria plicata, Cristaria tuberculata and Cristaria herculea from the Russian Far East should be considered as a single species, namely Cristaria plicata (Leach, 1815), with Cristaria tuberculata and Cristaria herculea as junior synonyms. The geographic range of Cristaria plicata and its conservation status are also presented here. PMID:27110206

  12. Molecular phylogeny of pearl oysters and their relatives (Mollusca, Bivalvia, Pterioidea)

    PubMed Central

    2010-01-01

    Background The superfamily Pterioidea is a morphologically and ecologically diverse lineage of epifaunal marine bivalves distributed throughout the tropical and subtropical continental shelf regions. This group includes commercially important pearl culture species and model organisms used for medical studies of biomineralization. Recent morphological treatment of selected pterioideans and molecular phylogenetic analyses of higher-level relationships in Bivalvia have challenged the traditional view that pterioidean families are monophyletic. This issue is examined here in light of molecular data sets composed of DNA sequences for nuclear and mitochondrial loci, and a published character data set of anatomical and shell morphological characters. Results The present study is the first comprehensive species-level analysis of the Pterioidea to produce a well-resolved, robust phylogenetic hypothesis for nearly all extant taxa. The data were analyzed for potential biases due to taxon and character sampling, and idiosyncracies of different molecular evolutionary processes. The congruence and contribution of different partitions were quantified, and the sensitivity of clade stability to alignment parameters was explored. Conclusions Four primary conclusions were reached: (1) the results strongly supported the monophyly of the Pterioidea; (2) none of the previously defined families (except for the monotypic Pulvinitidae) were monophyletic; (3) the arrangement of the genera was novel and unanticipated, however strongly supported and robust to changes in alignment parameters; and (4) optimizing key morphological characters onto topologies derived from the analysis of molecular data revealed many instances of homoplasy and uncovered synapomorphies for major nodes. Additionally, a complete species-level sampling of the genus Pinctada provided further insights into the on-going controversy regarding the taxonomic identity of major pearl culture species. PMID:21059254

  13. Factors driving changes in freshwater mussel (Bivalvia, Unionida) diversity and distribution in Peninsular Malaysia.

    PubMed

    Zieritz, Alexandra; Lopes-Lima, Manuel; Bogan, Arthur E; Sousa, Ronaldo; Walton, Samuel; Rahim, Khairul Adha A; Wilson, John-James; Ng, Pei-Yin; Froufe, Elsa; McGowan, Suzanne

    2016-11-15

    Freshwater mussels (Bivalvia, Unionida) fulfil important ecosystem functions and are one of the most threatened freshwater taxa globally. Knowledge of freshwater mussel diversity, distribution and ecology in Peninsular Malaysia is extremely poor, and the conservation status of half of the species presumed to occur in the region has yet to be assessed. We conducted the first comprehensive assessment of Peninsular Malaysia's freshwater mussels based on species presence/absence and environmental data collected from 155 sites spanning all major river catchments and diverse habitat types. Through an integrative morphological-molecular approach we recognised nine native and one widespread non-native species, i.e. Sinanodonta woodiana. Two species, i.e. Pilsbryoconcha compressa and Pseudodon cambodjensis, had not been previously recorded from Malaysia, which is likely a result of morphological misidentifications of historical records. Due to their restriction to single river catchments and declining distributions, Hyriopsis bialata, possibly endemic to Peninsular Malaysia, Ensidens ingallsianus, possibly already extinct in the peninsula, and Rectidens sumatrensis, particularly require conservation attention. Equally, the Pahang, the Perak and the north-western river catchments are of particular conservation value due to the presence of a globally unique freshwater mussel fauna. Statistical relationships of 15 water quality parameters and mussel presence/absence identified acidification and nutrient pollution (eutrophication) as the most important anthropogenic factors threatening freshwater mussel diversity in Peninsular Malaysia. These factors can be linked to atmospheric pollution, deforestation, oil-palm plantations and a lack of functioning waste water treatment, and could be mitigated by establishing riparian buffers and improving waste water treatment for rivers running through agricultural and residential land. PMID:27473771

  14. Unionid bivalves (Mollusca: Bivalvia: Unionidae) of Presque Isle Bay, Erie, Pennsylvania

    USGS Publications Warehouse

    Masteller, E.C.; Maleski, K.R.; Schloesser, D.W.

    1993-01-01

    The purpose of this study was to determine species composition and relative abundance of unionid bivalves (Mollusca: Bivalvia: Unionidae) in Presque Isle Bay, Erie, Pennsylvania 1990-1992. This information was compared with data from the only other extensive survey of unionids in the bay conducted in 1909-1911 (Ortmann 1919) to assess changes over the 80 years preceding the present study. A total of 1,540 individuals representing 18 species were collected in 1990-1992. Five relatively common species (between 7 and 42% of total individuals), six uncommon species (2 and 6%), and seven rare species (<1%) were found. The rare species were Anodontoides ferussacianus, Lasmigona costata, Ligumia recta, Ptychobranchus fasciolaris, Quadrula pustulosa pustulosa, Strophitus undaulatus, and Truncilla donaciformis. Five of the species found in Presque Isle Bay (Leptodea fragilis, Ligumia nasuta, Potamilus alatus, Quadrula quadrula, and Truncilla donaciformis) are listed as critically imperiled and one species (Truncilla truncata) as extirpated in the State of Pennsylvania by the Western Pennsylvania Conservancy. Comparisons between unionid populations in 1909-1911 and 1990-1992 indicate few substantial changes occurred during the past 80 years. A total of 22 species were found; 21 in 1909-1911 and 18 in 1990-1992. Seventeen species were found in both studies, an additional four in 1909-1911 and one in 1990-1992. The relative abundance of 11 of the 17 species found in both studies remained stable (i.e., common or uncommon) over the past 80 years. Only four species listed as uncommon in 1909-1911 were listed as rare in 1990-1992. However, the invasion of the zebra mussel (Dreissena polymorpha) is considered a threat to the continued existence of the entire Unionidae fauna in Presque Isle Bay, a unique habitat of the Great Lakes.

  15. Vesicomyinae (Bivalvia: Vesicomyidae) of the Kuril-Kamchatka Trench and adjacent abyssal regions

    NASA Astrophysics Data System (ADS)

    Krylova, Elena M.; Kamenev, Gennady M.; Vladychenskaya, Irina P.; Petrov, Nikolai B.

    2015-01-01

    Representatives of the subfamily Vesicomyinae (Bivalvia, Vesicomyidae) are tiny deep-sea molluscs distributed worldwide and reaching huge abundances of hundreds and thousands of specimens in trawl catches. During the German-Russian deep-sea expedition KuramBio (R/V Sonne, 2012) for the first time two vesicomyin species were collected from the abyssal plain adjacent to the Kuril-Kamchatka Trench from the depths of 4861-5787 m, Vesicomya pacifica (Smith, 1885) and "Vesicomya" filatovae sp.n. Two species of vesicomyins, V. sergeeviFilatova, 1971 and V. profundiFilatova, 1971, which were previously reported from the hadal of the Kuril-Kamchatka Trench, were not collected at the abyssal depth despite of the close geographical proximity of the sampling area to their distribution ranges. Altogether nine species of vesicomyins are recorded now from the West and Indo-West Pacific; data on distribution and morpho-anatomical characters of these species are provided. Taxonomic description of V. pacifica is revised including information on its soft part anatomy, new localities and COI sequences. For the first time for a vesicomyin bivalve molecular data is given for a species with an explicit morphological description and unambiguous taxonomic affiliation. Molecular analysis of 160 published COI sequences of vesicomyids and newly obtained molecular data on V. pacifica showed that V. pacifica and two undescribed vesicomyin species forming a monophyletic clade which exhibits sister relationships with the Pliocardiinae, the group of chemosymbiotic vesicomyids. "Vesicomya" filatovae sp.n. is provisionally assigned to the genus Vesicomya (s.l.) until additional morphological and molecular data are obtained. It differs from Vesicomya s.s. by a broader hinge margin with more radiating teeth and the presence of only one pair of demibranchs.

  16. Molecular phylogeny of Pholadoidea Lamarck, 1809 supports a single origin for xylotrophy (wood feeding) and xylotrophic bacterial endosymbiosis in Bivalvia.

    PubMed

    Distel, Daniel L; Amin, Mehwish; Burgoyne, Adam; Linton, Eric; Mamangkey, Gustaf; Morrill, Wendy; Nove, John; Wood, Nicole; Yang, Joyce

    2011-11-01

    The ability to consume wood as food (xylotrophy) is unusual among animals. In terrestrial environments, termites and other xylotrophic insects are the principle wood consumers while in marine environments wood-boring bivalves fulfill this role. However, the evolutionary origin of wood feeding in bivalves has remained largely unexplored. Here we provide data indicating that xylotrophy has arisen just once in Bivalvia in a single wood-feeding bivalve lineage that subsequently diversified into distinct shallow- and deep-water branches, both of which have been broadly successful in colonizing the world's oceans. These data also suggest that the appearance of this remarkable life habit was approximately coincident with the acquisition of bacterial endosymbionts. Here we generate a robust phylogeny for xylotrophic bivalves and related species based on sequences of small and large subunit nuclear rRNA genes. We then trace the distribution among the modern taxa of morphological characters and character states associated with xylotrophy and xylotrepesis (wood-boring) and use a parsimony-based method to infer their ancestral states. Based on these ancestral state reconstructions we propose a set of plausible hypotheses describing the evolution of symbiotic xylotrophy in Bivalvia. Within this context, we reinterpret one of the most remarkable progressions in bivalve evolution, the transformation of the "typical" myoid body plan to create a unique lineage of worm-like, tube-forming, wood-feeding clams. The well-supported phylogeny presented here is inconsistent with most taxonomic treatments for xylotrophic bivalves, indicating that the bivalve family Pholadidae and the subfamilies Teredininae and Bankiinae of the family Teredinidae are non-monophyletic, and that the principle traits used for their taxonomic diagnosis are phylogenetically misleading. PMID:21684342

  17. Occurrence and settlement of the common shipworm Teredo navalis (Bivalvia: Teredinidae) in Bremerhaven harbours, northern Germany

    NASA Astrophysics Data System (ADS)

    Tuente, Uda; Piepenburg, Dieter; Spindler, Michael

    2002-06-01

    The shipworm Teredo navalis L. is a xylophagous bivalve mollusc (Bivalvia: Teredinidae) with a long record of being very destructive to wooden ships and harbour buildings. It has been reported from numerous sites at the coasts of both the North and Baltic Seas since the eighteenth century. Here, we document for the first time the occurrence of live adult T. navalis in the harbours of Bremerhaven (Weser estuary, northern Germany). From August to December 1998, various wooden structures (fir floating fenders and pier posts, oak piles) from seven stations in different docks of two harbours (Überseehafen, Fischereihafen) were investigated for the presence and density of live specimens and burrows of T. navalis. The settlement of larval shipworms was studied by exposing experimental fir panels 0.06 m2 in size at 20 stations at water depths between 1 and 2 m for periods of 4 months between July and November. In addition, hydrographic profiles (0-8 m water depth) were obtained at 17 stations in five docks once every month from August to December. Live adult shipworms were found in both fir floating fenders and oak piles at four stations. The largest specimen found was 250 mm long. Shipworm burrows were detected at five stations in almost every wooden structure investigated but their abundances differed significantly: Maximum values were >10,000 m-2 in fir floating fenders, 4,600 m-2 in oak piles and 200 m-2 in fir pier posts. Actual shipworm infestation was detected at three of 16 stations in the exposed fir panels (1-3 burrow holes per panel). Water temperatures and salinities varied considerably during the 4-month investigation period. Temperatures decreased from 19.9°C in August to 0.7°C in December. Salinities ranged from 17.6 in August to 1.1 in November, but only at two lock stations during November and December did value drop below 5, which is regarded as the lethal limit for the larvae of this euryhaline teredinid species. We conclude that T. navalis encounters

  18. Sensitivity of juvenile Macomona liliana (bivalvia) to UV-photoactivated fluoranthene toxicity.

    PubMed

    Ahrens, Michael J; Nieuwenhuis, Ronald; Hickey, Christopher W

    2002-12-01

    This study assessed the sensitivity of Macomona liliana (bivalvia, tellinacea) to UV-photoactivated fluoranthene toxicity. Juvenile clams (0.5-2.0 mm) were exposed to a range of aqueous fluoranthene concentrations (5-500 microg/L) for 96 h, after which the clams' ability to rebury in control sediment was determined. Survivors of these fluoranthene-only toxicity tests were then exposed in clean seawater to UV radiation from a solar radiation-simulating light source for 1 h. The differences between EC(50) values before and after UV exposure provided a measure of phototoxicity of the bioaccumulated fluoranthene. Fluoranthene tissue burdens corresponding to the EC(50) values were determined by exposing a second batch of clams to (14)C-radiolabeled fluoranthene. A third experiment quantified the kinetics of fluoranthene uptake and elimination in water-only exposures. Fluoranthene phototoxicity was found to depend on the dose of fluoranthene and the duration of UV exposure. Exposure of animals to 1 h of UV radiation resulted fluoranthene toxicity that was 3 times higher (EC(50) = 46 microg/L) than that of those with no UV exposure (EC(50) = 153 microg/L). The corresponding critical body burden (i.e., fluoranthene tissue concentration at which 50% of the clams failed to rebury) was 6 ng/clam (or 700 microg/g dry weight [dw]) and 21 ng/clam (or 2300 microg/g dw) for UV-exposed and UV-unexposed animals, respectively. First-order uptake and elimination coefficients, determined in the kinetics experiment, were 0.825 Lg(-1) h(-1) and 0.059 h(-1), respectively, indicating rapid uptake and a short fluoranthene tissue half-life of approximately 12 h for M. liliana. Compared with other bivalve species of similar size, M. liliana appeared to be more than 1 order of magnitude less sensitive to UV-activated fluoranthene toxicity, although these differences may be a result in part of differences in the UV exposure regime. Nonetheless, the majority of M. liliana exposed to a

  19. Gastropoda-Bivalvia Fauna And Neogene-Quaternary Stratigraphy of the Southwest of Dardanelles (Çanakkale-NWAnatolia)

    NASA Astrophysics Data System (ADS)

    Kapan, Sevinç; Kabasakal, Sinem

    2016-04-01

    Gastropoda-Bivalvia Fauna And Neogene-Quaternary Stratigraphy of the Southwest of Dardanelles (Çanakkale-NWAnatolia) Sevinç KAPAN, Sinem KABASAKAL, Çanakkale Onsekiz Mart University, Engineering Faculty, Geological Engineering Department sevinckapan_yesilyurt@hotmail.com In this study, paleontology and stratigraphy of Neogene and Quaternary units around south of the Dardanelles have been examined using Gastropoda and Bivalvia fauna. In the investigation area, the base of the sediments that belongs to Neogene, consist of the volcanics which are formed with basalts, andesites and tuff. Neogene begins unconformity with basal conglomerate which are formed with basalt and tuff gravels. The measurable thickness of the Neogene sediments is approximately 200meters in total. First fossiliferius level which consist of Lymnocardium (Euxinicardium) nobile Sabba has showed similarities with the Pontian (Late Miocene) fauna of the Eastern Paratethys. The existence of Melanopsis and Psidium species indicate that the basin has been brackish water feeding by fresh water in the Early Pliocene. Theodoxus fluviatilis (Linne), Theodoxus (Calvertia) aff. imbricata Brusina, Theodoxus (Calvertia) licherdopoli scriptus (Stefanescu), Viviparus mammatus (Stefanescu), Valvata (Valavata) sulekiana Brusina, Valvata (Cincinna) crusitensis Fontannes, Hydrobia cf grandis Cobalcescu, Hydrobia ventrosa Monfort, Melanopsis (Melanopsis) cf. bergeroni Stefanescu, , Melanopsis (Melanopsis) sandbergeri rumana Tournouer, Melanopsis (Canthidomus) hybostoma anili Taner, Melanopsis (Canthidomus) hybostoma amaradica Fontannes, Melanopsis (Canthidomus) lanceolata Neumayr, Amphimelania fossariformis (Tournouer), Melanoides tuberculata monolithica (Bukowski), Radix (Radix) peregra (Müller), Planorbarius thiollierei (Michaud), Potamida (Potamida) craiovensis craiovensis (Tournouer), Potamida (Potamida) berbestiensis (Fontannes), Unio pristinus davilai Porumbaru, Unio subexquisitus Jatzko, Anadonta zmaji

  20. Thermal dependency of shell growth, microstructure, and stable isotopes in laboratory-reared Scapharca broughtonii (Mollusca: Bivalvia)

    NASA Astrophysics Data System (ADS)

    Nishida, Kozue; Suzuki, Atsushi; Isono, Ryosuke; Hayashi, Masahiro; Watanabe, Yusuke; Yamamoto, Yuzo; Irie, Takahiro; Nojiri, Yukihiro; Mori, Chiharu; Sato, Mizuho; Sato, Kei; Sasaki, Takenori

    2015-07-01

    We experimentally examined the growth, microstructure, and chemistry of shells of the bloody clam, Scapharca broughtonii (Mollusca: Bivalvia), reared at five temperatures (13, 17, 21, 25, and 29°C) with a constant pCO2 condition (˜450 μatm). In this species, the exterior side of the shell is characterized by a composite prismatic structure; on the interior side, it has a crossed lamellar structure on the interior surface. We previously found a negative correlation between temperature and the relative thickness of the composite prismatic structure in field-collected specimens. In the reared specimens, the relationship curve between temperature and the growth increment of the composite prismatic structure was humped shaped, with a maximum at 17°C, which was compatible with the results obtained in the field-collected specimens. In contrast, the thickness of the crossed lamellar structure was constant over the temperature range tested. These results suggest that the composite prismatic structure principally accounts for the thermal dependency of shell growth, and this inference was supported by the finding that shell growth rates were significantly correlated with the thickness of the composite prismatic structure. We also found a negative relationship between the rearing temperature and δ18O of the shell margin, in close quantitative agreement with previous reports. The findings presented here will contribute to the improved age determination of fossil and recent clams based on seasonal microstructural records.

  1. Presence and histopathological effects of the Parvatrema sp. (Digenea, Gymnophallidae) in the stout razor clam Tagelus plebeius (Bivalvia, Psammobiidae).

    PubMed

    da Silva, Patricia Mirella; Cremonte, Florencia; Sabry, Rachel Costa; Rosa, Rafael Diego; Cantelli, Liege; Barracco, Margherita Anna

    2009-09-01

    The stout razor clam Tagelus plebeius (Bivalvia, Psammobiidae) has a wide geographic distribution range, including the Brazilian coasts from the northeast (Alagoas) to the south (Santa Catarina). In March 2008, an episode of mass T. plebeius mortality (70%) occurred in an intertidal bed at The Pontal da Daniela, State of Santa Catarina, Brazil. We report here high prevalences (to 100%) of the trematode parasite Parvatrema sp. Cable, 1953 (Digenea, Gymnophallidae) infecting T. plebeius at high intensities. We describe the gymnophalid, echinostomatid and unidentified metacercariae parasites infecting the clam and the host reactions elicited by them. The use of special diagnostic techniques such as Ray's fluid thioglycollate medium (RFTM) and PCR assays to detect Perkinsus sp. pathogens, hemolymph cytology, and histopathological examinations did not show Perkinsus sp. infections, microcell infections, or neoplastic conditions. However, neither infections or pathology caused by trematode parasites; nor any other pathological condition could be uniquely correlated with the mortality event. A coincident flash flood might have contributed to cause the mortality episode. This is the first report of the Parvatrema sp. metacercariae larvae infecting the stout razor clam T. plebeius from Brazil. PMID:19500587

  2. De Novo Assembly and Characterization of Two Transcriptomes Reveal Multiple Light-Mediated Functions in the Scallop Eye (Bivalvia: Pectinidae)

    PubMed Central

    Pairett, Autum N.; Serb, Jeanne M.

    2013-01-01

    Background The eye has evolved across 13 separate lineages of molluscs. Yet, there have been very few studies examining the molecular machinary underlying eye function of this group, which is due, in part, to a lack of genomic resources. The scallop (Bivalvia: Pectinidae) represents a compeling molluscan model to study photoreception due to its morphologically novel and separately evolved mirror-type eye. We sequenced the adult eye transcriptome of two scallop species to: 1) identify the phototransduction pathway components; 2) identify any additional light detection functions; and 3) test the hypothesis that molluscs possess genes not found in other animal lineages. Results A total of 3,039 contigs from the bay scallop, Argopecten irradians and 26,395 contigs from the sea scallop, Placopecten magellanicus were produced by 454 sequencing. Targeted BLAST searches and functional annotation using Gene Ontology (GO) terms and KEGG pathways identified transcripts from three light detection systems: two phototransduction pathways and the circadian clock, a previously unrecognized function of the scallop eye. By comparing the scallop transcriptomes to molluscan and non-molluscan genomes, we discovered that a large proportion of the transcripts (7,776 sequences) may be specific to the scallop lineage. Nearly one-third of these contain transmembrane protein domains, suggesting these unannotated transcripts may be sensory receptors. Conclusions Our data provide the most comprehensive transcriptomic resource currently available from a single molluscan eye type. Candidate genes potentially involved in sensory reception were identified, and are worthy of further investigation. This resource, combined with recent phylogenetic and genomic data, provides a strong foundation for future investigations of the function and evolution of molluscan photosensory systems in this morphologically and taxonomically diverse phylum. PMID:23922823

  3. A new species of freshwater mussel (Bivalvia: Unionidae), Pleurobema athearni, from the Coosa River Drainage of Alabama, USA

    USGS Publications Warehouse

    Gangloff, M.M.; Williams, J.D.; Feminella, J.W.

    2006-01-01

    The Mobile Basin historically supported one of the most diverse freshwater mussel (Bivalvia: Unionidae) assemblages in North America. More than 65 species of mussels are known from the Basin, but it is difficult to determine how many species were present historically. The drainage's unique physical habitat was largely destroyed between the late 1800s and mid-1900s by impoundment and channel modifications of most of the larger rivers. Many species that were once common are now restricted to small headwater rivers and mid-sized tributaries. Recent Coosa River tributary surveys revealed a new, undescribed species of Pleurobema. This new species, Pleurobema athearni, is distinctive in outward appearance, shell morphometry and reproductive morphology, and can be distinguished from other Coosa River drainage unionids. Our analysis indicates that P. athearni is morphologically different from other similar taxa. It differs both in shell width/length and width/height ratios and thus provides a simple, quantitative means to differentiate this species from P. georgianum (Lea, 1841) Fusconaia barnesiana (Lea, 1838), and F. cerina (Conrad, 1838), which it superficially resembles and that also occur in the area. Our morphological diagnosis of this species is supported by recent molecular analyses that suggest this species is a Pleurobema and one closely related to other endemic Coosa River drainage unionids. The discovery of a new species of large, long-lived macroinvertebrate from a relatively well-sampled drainage in a populated region of the southeast United States underscores the need for more detailed surveys in isolated stretches of tributary streams. It should also serve as a reminder that almost 40 species of aquatic mollusks have been extirpated from the Mobile Basin before anything could be learned about their habitat or life history requirements. Copyright ?? 2006 Magnolia Press.

  4. The complete mitochondrial genome of the grand jackknife clam, Solen grandis (Bivalvia: Solenidae): a novel gene order and unusual non-coding region.

    PubMed

    Yuan, Yang; Li, Qi; Kong, Lingfeng; Yu, Hong

    2012-02-01

    Molluscs in general, and bivalves in particular, exhibit an extraordinary degree of mitochondrial gene order variation when compared with other metazoans. The complete mitochondrial genome of Solen grandis (Bivalvia: Solenidae) was determined using long-PCR and genome walking techniques. The entire mitochondrial genome sequence of S. grandis is 16,784 bp in length, and contains 36 genes including 12 protein-coding genes (atp8 is absent), 2 ribosomal RNAs, and 22 tRNAs. All genes are encoded on the same strand. Compared with other species, it bears a novel gene order. Besides these, we find a peculiar non-coding region of 435 bp with a microsatellite-like (TA)(12) element, poly-structures and many hairpin structures. In contrast to the available heterodont mitochondrial genomes from GenBank, the complete mtDNA of S. grandis has the shortest cox3 gene, and the longest atp6, nad4, nad5 genes. PMID:21598108

  5. A new occurrence of Anodontites tenebricosus (Bivalvia: Mycetopodidae) in the Sapucaí river basin, São Paulo, Brazil: environmental and conchological aspects.

    PubMed

    Troncon, E K; Avelar, W E P

    2011-08-01

    The aim of this work was to register the occurrence of Anodontites tenebricosus (Bivalvia: Mycetopodidae) in the Sapucaí river basin, municipality of São Joaquim da Barra, São Paulo state, Brazil, associating its occurrence to the environment in which they are found, besides providing conchological data to contribute to the identification of the species. Fifty one specimens of Anodontites tenebricosus were studied regarding their conchological and morphometrical aspects. Strong correlations were found between the morphometric variables, the correlation between 'length and height of the shell' being the most significant. The characteristics of the shells of A. tenebricosus found in the Sapucaí river basin resemble the descriptions of the species found in the literature; therefore, we are able to expand the area of occurrence of the species for the state of São Paulo. PMID:21881786

  6. Phylogenetic and morphometric analyses reveal ecophenotypic plasticity in freshwater mussels Obovaria jacksoniana and Villosa arkansasensis (Bivalvia: Unionidae)

    PubMed Central

    Inoue, Kentaro; Hayes, David M; Harris, John L; Christian, Alan D

    2013-01-01

    Abstract Freshwater mollusk shell morphology exhibits clinal variation along a stream continuum that has been termed the Law of Stream Distribution. We analyzed phylogenetic relationships and morphological similarity of two freshwater mussels (Bivalvia: Unionidae), Obovaria jacksoniana and Villosa arkansasensis, throughout their ranges. The objectives were to investigate phylogenetic structure and evolutionary divergence of O. jacksoniana and V. arkansasensis and morphological similarity between the two species. Our analyses were the first explicit tests of phenotypic plasticity in shell morphologies using a combination of genetics and morphometrics. We conducted phylogenetic analyses of mitochondrial DNA (1416 bp; two genes) and morphometric analyses for 135 individuals of O. jacksoniana and V. arkansasensis from 12 streams. We examined correlations among genetic, morphological, and spatial distances using Mantel tests. Molecular phylogenetic analyses revealed a monophyletic relationship between O. jacksoniana and V. arkansasensis. Within this O. jacksoniana/V. arkansasensis complex, five distinct clades corresponding to drainage patterns showed high genetic divergence. Morphometric analysis revealed relative differences in shell morphologies between the two currently recognized species. We conclude that morphological differences between the two species are caused by ecophenotypic plasticity. A series of Mantel tests showed regional and local genetic isolation by distance. We observed clear positive correlations between morphological and geographic distances within a single drainage. We did not observe correlations between genetic and morphological distances. Phylogenetic analyses suggest O. jacksoniana and V. arkansasensis are synonomous and most closely related to a clade composed of O. retusa, O. subrotunda, and O. unicolor. Therefore, the synonomous O. jacksoniana and V. arkansasensis should be recognized as Obovaria arkansasensis (Lea 1862) n

  7. Complete mitochondrial genome of Coelomactra antiquata (Mollusca: Bivalvia): The first representative from the family Mactridae with novel gene order and unusual tandem repeats.

    PubMed

    Meng, Xueping; Zhao, Nana; Shen, Xin; Hao, Jue; Liang, Meng; Zhu, Xiaolin; Cheng, Hanliang; Yan, Binlun; Liu, Zhaopu

    2012-06-01

    The complete mitochondrial genome plays an important role in the accurate inference of phylogenetic relationships among metazoans. Mactridae, also known as trough shells or duck clams, is an important family of marine bivalve clams in the order Veneroida. Here we present the complete mitochondrial genome sequence of the Xishishe Coelomactra antiquata (Mollusca: Bivalvia), which is the first representative from the family Mactridae. The mitochondrial genome of C. antiquata is of 17,384bp in length, and encodes 35 genes, including 12 protein-coding, 21 transfer RNA, and 2 ribosomal RNA genes. Compared with the typical gene content of animal mitochondrial genomes, atp8 and tRNAS(2) are missing. Gene order of the mitochondrial genome of C. antiquata is unique compared with others from Veneroida. In the mitochondrial genome of the C. antiquata, a total of 2189bp of non-coding nucleotides are scattered among 26 non-coding regions. The largest non-coding region contains one section of tandem repeats (99 bp×11), which is the second largest tandem repeats found in the mitochondrial genomes from Veneroida. The phylogenetic trees based on mitochondrial genomes support the monophyly of Veneridae and Lucinidae, and the relationship at the family level: ((Veneridae+Mactridae)+(Cardiidae+Solecurtidae))+Lucinidae. The phylogenetic result is consistent with the morphological classification. Meanwhile, bootstrap values are very high (BP=94-100), suggesting that the evolutionary relationship based on mitochondrial genomes is very reliable. PMID:22381378

  8. A new monorchiid cercaria (Digenea) parasitising the purple clam Amiantis purpurata (Bivalvia: Veneridae) in the Southwest Atlantic Ocean, with notes on its gonadal effect.

    PubMed

    Cremont, F; Kroeck, M A; Martorelli, S R

    2001-01-01

    An unnamed microcercous cercaria (Digenea: Monorchiidae), a parasite of Amiantis purpurata (Lamarck, 1818) (Bivalvia: Veneridae) and its corresponding metacercaria from the province of Buenos Aires and the Patagonian coast of the Southwest Atlantic Ocean, are described. The cercaria described in this paper differs from the three other monorchiid microcercous cercariae, i.e., Lasiotocus minutus (Manter, 1931), Lasiotocus elongatus (Manter, 1931), and Cercaria caribbea XXXVI Cable, 1956, mainly because of the extension of the excretory vesicle and the location of the ventral sucker. Cercariae artificially extracted from sporocysts encyst in a dish and form metacercariae enveloped by a gelatinous sac with two prolongations, which are used to adhere to the substratum. The monorchiid described in this paper has a life cycle similar to those of L. minutus and L. elongatus, although the adult stage of the present species is still unknown. Their larvae are similar in morphology and have venerid clams as their first hosts. The presence of a monorchiid larva is reported for the first time in the Southern Hemisphere. Its monthly prevalence rates, ranging from 0 to 25% (mean: 8.3%), are given from the Patagonian coast. The infection seems to cause castration as it was observed that during March through to May, when most gametes were produced in uninfected individuals, 81% of the infected individuals did not produce gametes. PMID:11699657

  9. The linked units of 5S rDNA and U1 snDNA of razor shells (Mollusca: Bivalvia: Pharidae).

    PubMed

    Vierna, J; Jensen, K T; Martínez-Lage, A; González-Tizón, A M

    2011-08-01

    The linkage between 5S ribosomal DNA and other multigene families has been detected in many eukaryote lineages, but whether it provides any selective advantage remains unclear. In this work, we report the occurrence of linked units of 5S ribosomal DNA (5S rDNA) and U1 small nuclear DNA (U1 snDNA) in 10 razor shell species (Mollusca: Bivalvia: Pharidae) from four different genera. We obtained several clones containing partial or complete repeats of both multigene families in which both types of genes displayed the same orientation. We provide a comprehensive collection of razor shell 5S rDNA clones, both with linked and nonlinked organisation, and the first bivalve U1 snDNA sequences. We predicted the secondary structures and characterised the upstream and downstream conserved elements, including a region at -25 nucleotides from both 5S rDNA and U1 snDNA transcription start sites. The analysis of 5S rDNA showed that some nontranscribed spacers (NTSs) are more closely related to NTSs from other species (and genera) than to NTSs from the species they were retrieved from, suggesting birth-and-death evolution and ancestral polymorphism. Nucleotide conservation within the functional regions suggests the involvement of purifying selection, unequal crossing-overs and gene conversions. Taking into account this and other studies, we discuss the possible mechanisms by which both multigene families could have become linked in the Pharidae lineage. The reason why 5S rDNA is often found linked to other multigene families seems to be the result of stochastic processes within genomes in which its high copy number is determinant. PMID:21364693

  10. Impact of zebra and quagga mussels (Dreissena spp.) on freshwater unionids (Bivalvia: Unionidae) in the Detroit River of the Great Lakes

    USGS Publications Warehouse

    Schloesser, D.W.; Kovalak, W.P.; Longton, G.D.; Ohnesorg, K.L.; Smithee, R.D.

    1998-01-01

    To assess the impact of zebra and quagga mussel (Dreissena spp.) infestation on unionids, unionids (Bivalvia: Unionidae) were sampled in the Detroit River in 1982-1983, before mussels invaded the river, and in 1992 and 1994, after mussels invaded the river. Live unionids at four stations along the southeastern shore accounted for 97% (20 species) of all shells collected in 1982-1983, whereas live unionids accounted for only 10% (13 species) in 1992. A similar decline in live unionids occurred at nine stations along the northwestern shore, except the decline occurred over the three sampling periods: in 1982-83, 84% (22 species) were live; in 1992, 65% (26 species) were live; and, in 1994, only 3% (13 species) were live. The difference in time to near-total mortality of unionids along the southeastern and northwestern shores is attributed to differences in the time of invasion and abundance of zebra mussel veligers in distinct water masses emanating from Lake St. Clair located immediately upstream of the Detroit River. Although individuals of all species of all unionid subfamilies declined between 1982 and 1992/1994, members of the subfamilies Anodontinae and Lampsilinae declined more than Ambleminae. Between 1986 and 1992/1994, five Anodontinae, three Lampsilinae and 0 Ambleminae species have been extirpated from the river due to dreissenid mussel infestation. Numbers of individuals of commonly found species declined more than numbers of individuals of uncommonly found species. However, the number of uncommon species declined 47% (17 to 9) along both the southeastern and northwestern shores, whereas common species remained the same (3 species) along the southeastern shore and declined only 40% (5 to 3 species) along the northwestern shore. This study, and others, suggest that high mortality of unionids can occur between 4 and 6 yr after initial invasion by dreissenids or up to 8 yr depending on water current patterns. Infestation-induced mortality of unionids in the

  11. Vesicomyidae (bivalvia): current taxonomy and distribution.

    PubMed

    Krylova, Elena M; Sahling, Heiko

    2010-01-01

    Vesicomyid bivalves are a consistent component of communities of sulphide-rich reducing environments distributed worldwide from 77 degrees N to 70 degrees S at depths from 100 to 9050 m. Up-to-now the taxonomy of the family has been uncertain. In this paper, the current state of vesicomyid taxonomy and distribution at the generic rank are considered. This survey is founded on a database including information both from literature sources and also unpublished data of the authors on all recent species of vesicomyids. We suggest that the Vesicomyidae is not a synonym of Kelliellidae, and is therefore a valid family name. We propose to divide the family Vesicomyidae into two subfamilies: Vesicomyinae and Pliocardiinae. The Vesicomyinae includes one genus, Vesicomya, which comprises small-sized bivalves characterized by non-reduced gut and the absence of subfilamental tissue in gills. Symbiosis with chemoautotrophic bacteria has, so far, not been proved for Vesicomya and the genus is not restricted to sulphide-rich reducing habitats. The subfamily Pliocardiinae currently contains about 15 genera with mostly medium or large body size, characterized by the presence of subfilamental tissue in the gills. The Pliocardiinae are highly specialized for sulphide-rich reducing environments, harbouring chemoautrophic bacteria in their gills. This is the first summary of the generic structure of the family Vesicomyidae that allow us to analyze the distribution of vesicomyids at the generic level. We recognize here five different distribution patterns that are related to the specific environmental demands. The general trends in the distribution patterns of the vesicomyids are an occurrence of the majority of genera in broad geographical ranges and the prevalence of near continental type of distribution. PMID:20376362

  12. Vesicomyidae (Bivalvia): Current Taxonomy and Distribution

    PubMed Central

    Krylova, Elena M.; Sahling, Heiko

    2010-01-01

    Vesicomyid bivalves are a consistent component of communities of sulphide-rich reducing environments distributed worldwide from 77° N to 70°S at depths from 100 to 9050 m. Up-to-now the taxonomy of the family has been uncertain. In this paper, the current state of vesicomyid taxonomy and distribution at the generic rank are considered. This survey is founded on a database including information both from literature sources and also unpublished data of the authors on all recent species of vesicomyids. We suggest that the Vesicomyidae is not a synonym of Kelliellidae, and is therefore a valid family name. We propose to divide the family Vesicomyidae into two subfamilies: Vesicomyinae and Pliocardiinae. The Vesicomyinae includes one genus, Vesicomya, which comprises small-sized bivalves characterized by non-reduced gut and the absence of subfilamental tissue in gills. Symbiosis with chemoautotrophic bacteria has, so far, not been proved for Vesicomya and the genus is not restricted to sulphide-rich reducing habitats. The subfamily Pliocardiinae currently contains about 15 genera with mostly medium or large body size, characterized by the presence of subfilamental tissue in the gills. The Pliocardiinae are highly specialized for sulphide-rich reducing environments, harbouring chemoautrophic bacteria in their gills. This is the first summary of the generic structure of the family Vesicomyidae that allow us to analyze the distribution of vesicomyids at the generic level. We recognize here five different distribution patterns that are related to the specific environmental demands. The general trends in the distribution patterns of the vesicomyids are an occurrence of the majority of genera in broad geographical ranges and the prevalence of near continental type of distribution. PMID:20376362

  13. Conservation of Gbx genes from EHG homeobox in bivalve molluscs.

    PubMed

    Mesías-Gansbiller, Crimgilt; Sánchez, José L; Pazos, Antonio J; Lozano, Vanessa; Martínez-Escauriaza, Roi; Luz Pérez-Parallé, M

    2012-04-01

    Homeobox-containing genes encode a set of transcription factors that have been shown to control spatial patterning mechanisms in bilaterian organism development. The homeobox gene Gbx, included in the EHGbox cluster, is implicated in the development of the nervous system. In this study, we surveyed five different families of Bivalvia for the presence of Gbx genes by means of PCR with degenerate primers. We were able to recover seven Gbx gene fragments from five bivalve species: Solen marginatus, Mimachlamys varia, Venerupis pullastra, Ostrea edulis and Mytilus galloprovincialis (the derived amino acid sequence were designated Sma-Gbx, Cva-Gbx, Vpu-Gbx, Oed-Gbx and Mga-Gbx, respectively). These genes are orthologous to various Gbx genes present in bilaterian genomes. The Gbx genes in four Bivalvia families, namely Solenidae, Veneridae, Ostreidae and Mytilidae, are newly reported here and we also showed additional information of the Gbx genes of Pectinidae. The phylogenetic analyses by neighbour-joining, UPGMA, maximum parsimony and Bayesian analysis clearly indicated that the Gbx sequences formed a well supported clade and assigned these Gbx genes to the Gbx family. These data permit to confirm that the homeodomain of the Gbx family is highly conserved among these five distinct families of bivalve molluscs. PMID:22245384

  14. Indirect Evidence on Sex Reversal of Sinonovacula constricta (Bivalvia: Euheterodonta) and Gomphina veneriformis (Bivalvia: Veneridae)

    PubMed Central

    Shin, Yun Kyung; Park, Jung Jun; Choi, Ji Sung; Lee, Jung Sick

    2014-01-01

    This study attempts to propose the possibility of the sex reversal in Sinonovacula constricta and Gomphina veneriformis by confirming the changes in the sex ratio with the shell length in the same population level. For analysis of sex ratio, 100 individuals of S. constricta (SL 26.5-95.0 mm) and 2385 individuals of G. veneriformis (SL 15.1-60.1 mm) were used. Sex was analyzed histologically. Both species displayed the tendency of increase in the female proportion with increase in shell length. In this study, changes in the sex ratio in accordance with the growth of S. constricta and G. veneriformis are determined to be indirect evidence that signifies their sex reversal. PMID:25949174

  15. The F type mitochondrial genome of hard-shelled mussel: Mytilus coruscus (Mytiloida, Mytilidae).

    PubMed

    Lee, Yu-Cheol; Lee, Youn-Ho

    2016-01-01

    We determined the complete mitochondrial genome of the female hard-shelled mussel Mytilus coruscus (Gould, 1869) (F type). The F type genome is composed of 16,642 bp in length including 12 protein coding genes (PCGs), 2 rRNA and 23 tRNA with the same gene content and order as the other Mytilus species which is characterized by the absence of the ATPase8 gene and addition of tRNA(Met) (AUA). The nucleotide composition of the genome shows that the percentage of A+T (63.2%) is higher than those of M. edulis complex species (M. edulis, M. galloprovincialis, M. trossulus) but lower than that of M. californianus. The F type mitochondrial genome of M. coruscus will provide useful information on the evolutionary history of the Mytilus species in the family Mitilidae. PMID:24730572

  16. Characterization of eight novel microsatellite markers in the green-lipped mussel Perna viridis (Mytilidae).

    PubMed

    Cao, Y Y; Li, Z B; Li, Q H; Chen, X J; Chen, L; Dai, G

    2013-01-01

    The green lipped mussel, also known as the Asian green mussel (Perna viridis) is a fast reproducing and valuable food source, but it is also considered an invasive species and can clog and damage pipes and marine equipment. Eight novel polymorphic microsatellite loci for P. viridis were isolated and characterized. Microsatellite polymorphism was evaluated in 30 individuals collected from Xiamen, China. The number of alleles per locus and the polymorphism information content ranged from 2 to 5 and from 0.3092 to 0.7031, respectively. The observed and expected heterozygosities were 0.1538-0.8400 and 0.1448-0.6833, respectively. The loci identified in this study could provide a useful tool for the genetic population structure analysis of P. viridis. PMID:23420359

  17. Sterols from Mytilidae Show Anti-Aging and Neuroprotective Effects via Anti-Oxidative Activity

    PubMed Central

    Sun, Yujuan; Lin, Yanfei; Cao, Xueli; Xiang, Lan; Qi, Jianhua

    2014-01-01

    For screening anti-aging samples from marine natural products, K6001 yeast strain was employed as a bioassay system. The active mussel extract was separated to give an active sterol fraction (SF). SF was further purified, and four sterol compounds were obtained. Their structures were determined to be cholesterol (CHOL), brassicasterol, crinosterol, and 24-methylenecholesterol. All compounds showed similar anti-aging activity. To understand the action mechanism involved, anti-oxidative experiments, reactive oxygen species (ROS) assays, and malondialdehyde (MDA) tests were performed on the most abundant compound, CHOL. Results indicated that treatment with CHOL increases the survival rate of yeast under oxidative stress and decreases ROS and MDA levels. In addition, mutations of uth1, skn7, sod1, and sod2, which feature a K6001 background, were employed and the lifespans of the mutations were not affected by CHOL. These results demonstrate that CHOL exerts anti-aging effects via anti-oxidative stress. Based on the connection between neuroprotection and anti-aging, neuroprotective experiments were performed in PC12 cells. Paraquat was used to induce oxidative stress and the results showed that the CHOL and SF protect the PC12 cells from the injury induced by paraquat. In addition, these substance exhibited nerve growth factor (NGF) mimic activities again confirmed their neuroprotective function. PMID:25429428

  18. [Research progress on Drynaria fortunei naringin on inflammation and bone activity].

    PubMed

    Yin, Fang-ming; Xiao, Lian-bo; Zhang, Yun

    2015-02-01

    Flavonoid naringin is widely distributed in various types of plants and is an important component of herbal Drynaria. In previous studies, Drynaria has been demonstrated to have inhibitory effects on inflammatory responses and bone destruction and exert anabolic effects on bone, has been widely used in the clinical treatment. Naringin, was in the stage of experimental yet. The experimental results have confirmed that naringin suppressed inflammation including arthritis by lowering the expression of inflammatory cytokines, and the mechanism can be explained as reducing the expression of NF-κB. Naringin has been shown to increase osteoblast proliferation by increasing the expression of BMP-2, inhibit osteoclast activity by reducing the expression of RANKL. In animal experimental, naringin was useful for osteoporosis, and the mechanisms are in-depth studies. Research in the field of traditional Chinese medicine and orthopedics, naringin as a explicit material structure in the components of Drynaria, has been concerned about the experimental studies, it is not only prosperity the development of traditional Chinese medicine research,but also ready for clinical studies anti-inflammatory and bone effects of naringin in the future. PMID:25924506

  19. The behaviour of giant clams (Bivalvia: Cardiidae: Tridacninae).

    PubMed

    Soo, Pamela; Todd, Peter A

    2014-01-01

    Giant clams, the largest living bivalves, live in close association with coral reefs throughout the Indo-Pacific. These iconic invertebrates perform numerous important ecological roles as well as serve as flagship species-drawing attention to the ongoing destruction of coral reefs and their associated biodiversity. To date, no review of giant clams has focussed on their behaviour, yet this component of their autecology is critical to their life history and hence conservation. Almost 100 articles published between 1865 and 2014 include behavioural observations, and these have been collated and synthesised into five sections: spawning, locomotion, feeding, anti-predation, and stress responses. Even though the exact cues for spawning in the wild have yet to be elucidated, giant clams appear to display diel and lunar periodicities in reproduction, and for some species, peak breeding seasons have been established. Perhaps surprisingly, giant clams have considerable mobility, ranging from swimming and gliding as larvae to crawling in juveniles and adults. Chemotaxis and geotaxis have been established, but giant clams are not phototactic. At least one species exhibits clumping behaviour, which may enhance physical stabilisation, facilitate reproduction, or provide protection from predators. Giant clams undergo several shifts in their mode of acquiring nutrition; starting with a lecithotrophic and planktotrophic diet as larvae, switching to pedal feeding after metamorphosis followed by the transition to a dual mode of filter feeding and phototrophy once symbiosis with zooxanthellae (Symbiodinium spp.) is established. Because of their shell weight and/or byssal attachment, adult giant clams are unable to escape rapidly from threats using locomotion. Instead, they exhibit a suite of visually mediated anti-predation behaviours that include sudden contraction of the mantle, valve adduction, and squirting of water. Knowledge on the behaviour of giant clams will benefit conservation and restocking efforts and help fine-tune mariculture techniques. Understanding the repertoire of giant clam behaviours will also facilitate the prediction of threshold levels for sustainable exploitation as well as recovery rates of depleted clam populations. PMID:25414524

  20. Complete mitochondrial genome of Ostrea denselamellosa (Bivalvia, Ostreidae).

    PubMed

    Yu, Hong; Kong, Lingfeng; Li, Qi

    2016-01-01

    The complete mitochondrial (mt) genome of the flat oyster, Ostrea denselamellosa, was determined using Long-PCR and genome walking techniques in this study. The total length of the mt genome sequence of O. denselamellosa was 16,227 bp, which is the smallest reported Ostreidae mt genome to date. It contained 12 protein-coding genes (lacking of ATP8), 23 transfer RNA genes, and two ribosomal RNA genes. A bias towards a higher representation of nucleotides A and T (60.7%) was detected in the mt genome of O. denselamellosa. The rrnL was split into two fragments (3' half, 711 bp; 5' half, 509 bp), which seems to be the unique characteristics of Ostreidae mt genomes. PMID:24779597

  1. Intraspecific variability and systematics in South American Syrotrigoniinae (Trigoniida, Bivalvia)

    NASA Astrophysics Data System (ADS)

    Echevarría, Javier; Damborenea, Susana E.; Manceñido, Miguel O.

    2015-04-01

    The systematics of the genus Syrotrigonia is revised in the light of the intraspecific variability of a large sample of Syrotrigonia sigeli from the Valanginian from Neuquén Basin, Argentina. The genus can be recognized by the presence of concentric or subconcentric costae surrounding the umbo, later on developing an inflection and finally resulting in a set of anterior horizontal to commarginal costae and another set of posterior sub-vertical costae. The anterior part of the area bears transverse, usually anteriorly concave, costae which direct towards the umbo on the escutcheon; initially they are continuous with those on the flank, but later on they usually alternate. General shell shape, the presence of an antecarinal sulcus, the junction pattern between both sets of costae and the number of horizontal costae relative to vertical costae are variable among species, while costae width or density and the development of horizontal vs. commarginal costae may vary highly within species. The presence of commarginal rugae developed on the whole surface of the shell is interpreted as a result of environmental perturbations. A brief biogeographical interpretation of the family Buchotrigoniidae is also outlined. Syrotrigonia probably originated in North America in the Tithonian, being widespread in the Pacific coast of South America by Early Cretaceous times; at least six (probably seven) South American species could be recognized. By Aptian times the taxon reached the Tethyan realm, its last record being Aptian or Albian in age. The frequent presence of different species in marginal marine deposits suggests a euryhaline lineage adapted to salinity variations, this may also be the cause of the frequent presence of commarginal rugae. Considering the high variability displayed in the analyzed material, large samples are needed to characterize new species within the group.

  2. The complete mitochondrial genome of Crassostrea gasar (Bivalvia: Ostreidae).

    PubMed

    Cavaleiro, Nathalia P; Solé-Cava, Antonio M; Melo, Cláudio M R; de Almeida, Luiz G; Lazoski, Cristiano; Vasconcelos, Ana Tereza R

    2016-07-01

    The complete mitochondrial genome of Crassostrea gasar was sequenced using the Ion Proton technology in combination with 454 Roche GS-FLX plataform data. We assembled a 17,686 bp complete circular mitochondrial genome, containing 13 protein-coding genes, a major non-coding region (MNR), two ribosomal RNA genes and 24 transfer RNA genes. Phylogenetic analysis of concatenated amino acid sequences from mitochondria showed monophyletic clades formed with high bootstrap values. This is the first complete mitochondrial sequence of an oyster from South America. Mitogenome sequence was deposited in GenBank under the accession number KR856227. PMID:27158791

  3. Carbonate-associated sulfate in lucinid (Bivalvia) shells

    NASA Astrophysics Data System (ADS)

    Peng, Y.; Bao, H.; Anderson, L.; Engel, A. S.

    2007-12-01

    Symbiosis is a fundamental driver of evolution, with examples ranging from mitochondria in eukaryotic cells to barnacle-whale commensalism. The association between sulfur-oxidizing (thiotrophic) bacteria and the lucinid bivalve clade is particularly intriguing because the inferred antiquity of the relationship (>400 m.y.) seems at odds with the relatively loose ecologic linkage of living members. Because only half of genus-level lucinid taxa are extant, and the δ13C of shell carbonate exhibits no systematic difference between symbiotic and non- symbiotic bivalves, a new morphologically-independent proxy to determine whether fossil taxa possessed thiotrophic endosymbionts is needed. The δ34S of carbonate-associated sulfate (CAS) in bivalve shells may hold promise because biogenic carbonate incorporates sulfate into its crystal structure during biomineralization. Incorporation of bacterially derived SO42- (with a more negative δ34S value due to its reduced sulfur origin) into the lucinid-shell crystal lattice would, therefore, impart a distinctly lower δ34SCAS value than that from seawater SO42-, and would be distinguishable from CAS values of co- occurring heterotrophic bivalves. We measured CAS contents, δ34SCAS and δ18OCAS values of 15 sets of lucinid and co-occurring infaunal and epifaunal heterotrophic bivalve shells collected from modern and Cenozoic shallow marine sites. The modern bivalve shells had variable CAS content, from 100 to 2600 ppm. Epifauna often had the highest concentrations relative to the other ecological groups. The δ34SCAS and δ18OCAS clustered at values corresponding to modern seawater sulfate, but with significant scatter. There was no systematic isotope- compositional difference among all bivalves in the same habitat, or among the same lucinid, infaunal, or epifaunal groups across different sites. The fossil bivalve shells tended to preserve lower CAS concentrations and the isotope compositions further deviated from seawater values. These data suggest that 1) pore-water sulfate in shallow sediments is highly heterogeneous in its concentration and isotope composition, probably due to active microbial sulfate reduction, bioturbation, and water-pumping by bivalves and other infaunal filter feeders; 2) CAS is derived from ambient porewater or pumped-in seawater for infauna or epifauna, as well as for lucinids; and 3) CAS concentration and isotope compositions are vulnerable to later diagenetic processes.

  4. Sublethal foot-predation on Donacidae (Mollusca: Bivalvia)

    NASA Astrophysics Data System (ADS)

    Salas, Carmen; Tirado, Cristina; Manjón-Cabeza, Maria Eugenia

    2001-08-01

    The incidence of foot nipping was studied on the Donax spp. of the littoral of Málaga (Southern Spain, 2875 specimens collected from February 1990 to January 1991) and of Ré island (French Atlantic coast, 262 specimens of Donax vittatus (Da Costa, 1778) collected in May 1996). In Málaga, Donax trunculus L., 1758 was the species most regularly nipped (18% of individuals), with peaks in summer (25% in August and 48% in September) and winter (34% in December). In Ré island, 27% of the specimens showed a nipped foot. Logistic regression shows that in D. trunculus length is the variable that most influences the probability of foot nipping, followed by weight and chlorophyll a. However, the difference in length between damaged and undamaged individuals was not significant (U-Mann-Whitney test). The size class frequency and the values of Ivlev's index show that the small size classes were avoided, while for the other size classes predation remained balanced throughout the year. Therefore, the avoidance of the small size classes makes length the most influential variable. The logistic regression indicated a coefficient B=-0.03 for weight. This implies a slightly negative influence on the probability of foot nipping. However, without the data of September, there is a positive correlation ( r=0.76, p<0.01) between the monthly percentages of predation and the flesh dry weight of a standard individual (25 mm long). The peak in September could be due to the recruitment peak of bivalves, which may have attracted more predators to the area, and/or to the recruitment of predators such as crabs to the swash zone. Logistic regression and test of comparison of percentages indicate that there was not any influence of the sex of an animal on the probability of foot nipping. Only in February was a significantly higher percentage ( p<0.05) of females nipped (44.44%) than the total of females in the sample (20.20%). The biomass (as flesh dry weight) of D. trunculus lost by foot nipping amounts to more than 20% in most of the size classes. There was an increase from the small sizes to the largest ones, in which it reaches 37%, with a positive correlation ( r=0.84; p<0.005) between size class and loss of biomass. Possible predators responsible for the foot nipping are crabs. Crab species usually found together with the donacids were Portumnus latipes (Pennant, 1777) Liocarcinus vernalis (Risso, 1816) and Atelecyclus undecimdentatus (Herbst, 1783). In aquarium experiments, they demonstrated an ability to nip the foot of clams. Portumnus latipes was the most active foot nipper, but left alive all the damaged clams. Therefore, we conclude that crabs are the most likely foot-nipping predators in the field.

  5. Analysis of synonymous codon usage patterns in sixty-four different bivalve species

    PubMed Central

    De Moro, Gianluca; Venier, Paola; Pallavicini, Alberto

    2015-01-01

    Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across different genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 different species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable differences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational efficiency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon in this large, commercially and environmentally important, class of marine invertebrates. PMID:26713259

  6. Establishment of the green mussel, Perna viridis (Linnaeus 1758) (Mollusca: Mytilidae) on the West Coast of Florida

    USGS Publications Warehouse

    Benson, A.J.; Marelli, D.C.; Frischer, M.E.; Danforth, J.M.; Williams, J.D.

    2001-01-01

    In 1999, the green mussel, Perna viridis, was first observed in Tampa Bay, Florida. This was the first reported occurrence of this Indo-Pacific marine bivalve in North America. The mussels found in Tampa Bay were confirmed to be P. viridis based on both morphological and genetic characteristics. Since the initial discovery, surveys in Tampa Bay and on the west coast of Florida have documented the growth, recruitment, and range expansion of P. viridis. From November 1999 to July 2000, the mean shell length of a Tampa Bay population increased from 49.0 mm to 94.1 mm, an increase of 97%. Populations of P. viridis are successfully reproducing in Tampa Bay. Recruitment was observed on sampling plates in May and continued through July 2000. The full extent of mussel colonization is not clear, but mussels were found outside Tampa Bay in St. Petersburg, Florida, south to Venice. Based on these studies it is evident that P. viridis has successfully invaded Tampa Bay and the west coast of Florida. The long-term impact of P. viridis on native communities off the west coast of Florida cannot be predicted at this time.

  7. Dual Symbiosis in a Bathymodiolus sp. Mussel from a Methane Seep on the Gabon Continental Margin (Southeast Atlantic): 16S rRNA Phylogeny and Distribution of the Symbionts in Gills

    PubMed Central

    Duperron, Sébastien; Nadalig, Thierry; Caprais, Jean-Claude; Sibuet, Myriam; Fiala-Médioni, Aline; Amann, Rudolf; Dubilier, Nicole

    2005-01-01

    Deep-sea mussels of the genus Bathymodiolus (Bivalvia: Mytilidae) harbor symbiotic bacteria in their gills and are among the dominant invertebrate species at cold seeps and hydrothermal vents. An undescribed Bathymodiolus species was collected at a depth of 3,150 m in a newly discovered cold seep area on the southeast Atlantic margin, close to the Zaire channel. Transmission electron microscopy, comparative 16S rRNA analysis, and fluorescence in situ hybridization indicated that this Bathymodiolus sp. lives in a dual symbiosis with sulfide- and methane-oxidizing bacteria. A distinct distribution pattern of the symbiotic bacteria in the gill epithelium was observed, with the thiotrophic symbiont dominating the apical region and the methanotrophic symbiont more abundant in the basal region of the bacteriocytes. No variations in this distribution pattern or in the relative abundances of the two symbionts were observed in mussels collected from three different mussel beds with methane concentrations ranging from 0.7 to 33.7 μM. The 16S rRNA sequence of the methanotrophic symbiont is most closely related to those of known methanotrophic symbionts from other bathymodiolid mussels. Surprisingly, the thiotrophic Bathymodiolus sp. 16S rRNA sequence does not fall into the monophyletic group of sequences from thiotrophic symbionts of all other Bathymodiolus hosts. While these mussel species all come from vents, this study describes the first thiotrophic sequence from a seep mussel and shows that it is most closely related (99% sequence identity) to an environmental clone sequence obtained from a hydrothermal plume near Japan. PMID:15811991

  8. A complex picture of associations between two host mussels and symbiotic bacteria in the Northeast Atlantic

    NASA Astrophysics Data System (ADS)

    Rodrigues, Clara F.; Cunha, Marina R.; Génio, Luciana; Duperron, Sébastien

    2013-01-01

    Among chemosymbiotic metazoans found at deep-sea hydrothermal vents, cold seeps and organic falls, members of the mussel clade Bathymodiolinae (Bivalvia: Mytilidae) have evolved interactions with a higher diversity of bacterial lineages than other bivalve groups. Here, we characterized the bacteria associated with "Bathymodiolus" mauritanicus and Idas-like specimens from three sites in the Northeast Atlantic (two mud volcanoes in the Gulf of Cadiz and one seamount of the Gorringe Bank). Phylogenetic analysis of bacterial 16S rRNA-encoding gene sequences demonstrated that " B". mauritanicus has a dual symbiosis dominated by two phylotypes of methane-oxidising bacteria and a less abundant phylotype of a sulphur-oxidising bacterium. The latter was the dominant phylotype in a sympatric population of Idas-like mussels at the Darwin mud volcano. These results are the first report of a bacterial phylotype shared between two deep-sea mussels from divergent clades. This sulphur-oxidising bacterium was absent from Idas-like specimens from the other two sites (Gorringe Bank and Meknès mud volcano), in which bacterial clone libraries were dominated by other Gammaproteobacteria related to symbionts previously identified in Idas modiolaeformis from the Eastern Mediterranean. All Idas-like specimens studied herein are closely related and also related to I. modiolaeformis. However, they probably display different associations with bacteria, with the possible absence of both methane- and sulphur-oxidising symbionts at the Gorringe Bank. These results draw a very complex picture of associations between mussels and bacteria in the Northeast Atlantic, which could be highly variable depending on locale characteristics of the habitats.

  9. A complex picture of associations between two host mussels and symbiotic bacteria in the Northeast Atlantic.

    PubMed

    Rodrigues, Clara F; Cunha, Marina R; Génio, Luciana; Duperron, Sébastien

    2013-01-01

    Among chemosymbiotic metazoans found at deep-sea hydrothermal vents, cold seeps and organic falls, members of the mussel clade Bathymodiolinae (Bivalvia: Mytilidae) have evolved interactions with a higher diversity of bacterial lineages than other bivalve groups. Here, we characterized the bacteria associated with "Bathymodiolus" mauritanicus and Idas-like specimens from three sites in the Northeast Atlantic (two mud volcanoes in the Gulf of Cadiz and one seamount of the Gorringe Bank). Phylogenetic analysis of bacterial 16S rRNA-encoding gene sequences demonstrated that "B". mauritanicus has a dual symbiosis dominated by two phylotypes of methane-oxidising bacteria and a less abundant phylotype of a sulphur-oxidising bacterium. The latter was the dominant phylotype in a sympatric population of Idas-like mussels at the Darwin mud volcano. These results are the first report of a bacterial phylotype shared between two deep-sea mussels from divergent clades. This sulphur-oxidising bacterium was absent from Idas-like specimens from the other two sites (Gorringe Bank and Meknès mud volcano), in which bacterial clone libraries were dominated by other Gammaproteobacteria related to symbionts previously identified in Idas modiolaeformis from the Eastern Mediterranean. All Idas-like specimens studied herein are closely related and also related to I. modiolaeformis. However, they probably display different associations with bacteria, with the possible absence of both methane- and sulphur-oxidising symbionts at the Gorringe Bank. These results draw a very complex picture of associations between mussels and bacteria in the Northeast Atlantic, which could be highly variable depending on locale characteristics of the habitats. PMID:23132300

  10. The families Carditidae and Condylocardiidae in the Magellan and Perú-Chile provinces (Bivalvia: Carditoidea).

    PubMed

    Güller, Marina; Zelaya, Diego G

    2013-01-01

    Based on the study of available types and extant collections, this paper provides a systematic revision of the living species of Carditoidea occurring in the Magellan and Perú-Chile Provinces. Out of the 19 nominal species reported for the area, eight species are recognized as valid: Cyclocardia compressa, C. spurca, C. thouarsii, C. velutina, Carditella naviformis, C. semen, C. tegulata and Carditopsis flabellum. Other eight nominal species are regarded as synonyms: Cardita magellanica of Cyclocardia velutina; Carditella pallida of C. tegulata; Cardita australis and Actinobolus philippi of Carditella naviformis; Cardium pygmaeum of Carditella semen; Cardita paeteliana of Cyclocardia spurca; Carditella pallida duodecimcostata of Carditopsis flabellum; and Cardita congelascens of Cyclocardia thouarsii. Furthermore, Cardita malvinae and Cardium parvulum are nomina dubia, and the occurrence of Carditella exulata in Magellanic waters is doubtful. PMID:25243284

  11. Ultrastructure of the spermatogenesis of the cockle Anadara granosa L. (Bivalvia: Arcidae)

    NASA Astrophysics Data System (ADS)

    Suwanjarat, J.

    1999-11-01

    In this paper spermatogenesis and sperm ultrastructure of the cockle Anadara granosa are studied using transmission electron microscopy. The spermatocyte presents electron-dense vesicles and the arising axoneme that begins to form the flagellum. During spermatid differentiation, proacrosomal vesicles appear to migrate towards the presumptive anterior pole of the nucleus; eventually these vesicles become acrosome. The spermatozoon of Anadara granosa is of the primitive type. The acrosome, situated at the apex of the nucleus, is cap-shaped and deeply invaginated at the inner side. The spherical nucleus of the spermatozoon contains dense granular chromatin and shows invagination at the posterior poles. The centriole shows the classic nine triplets of microtubules. The middle piece consists of the centriolar complex surrounded by five giant mitochondria. It is shown that the ultrastructure of spermatozoa and spermiogenesis of Anadara granosa reveals a number of features that are common among bivalves.

  12. Expression of glutamine synthetase in Tegillarca granosa (Bivalvia, Arcidae) hemocytes stimulated by Vibrio parahaemolyticus and lipopolysaccharides.

    PubMed

    Bao, Y B; Li, L; Ye, M X; Dong, Y H; Jin, W X; Lin, Z H

    2013-01-01

    The blood cockle, Tegillarca granosa, is a widely consumed clam in the Indo-Pacific region. Glutamine synthetase (GS) is an enzyme that plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. We identified the GS of T. granosa (Tg-GS) from hemocytes by 3'- and 5'-rapid amplification of cDNA ends (RACE)-PCR. The full-length cDNA consisted of 1762 bp, with a 1104-bp open reading frame encoding 367 amino acids. Sequence comparison showed that Tg-GS has homology to GS of other organisms, with 79.78% identity with GS from the Pacific oyster Crassostrea gigas, 71.98% identity with GS from the zebrafish Danio rerio, and 68.96% identity with human Homo sapiens GS. A C-beta-Grasp domain and an N-catalytic domain were identified in Tg-GS, indicating that Tg-GS should be classified as a new member of the GS family. A quantitative RT-PCR assay was used to detect mRNA expression of Tg-GS in five different tissues. Higher levels of mRNA expression of GS were detected in the tissues of hemocytes and the mantle. Up-regulation of GS by challenge with the bacteria Vibrio parahaemolyticus and with bacterial wall lipopolysaccharides showed that GS plays a role in anti-bacterial immunity. We conclude that pathogen infection significantly induces expression level of Tg- GS, and that activation of GS influences the immune response of T. granosa by increasing glutamine concentration. PMID:23661439

  13. Physiological responses of the European cockle Cerastoderma edule (Bivalvia: Cardidae) as indicators of coastal lagoon pollution.

    PubMed

    Nilin, Jeamylle; Pestana, João Luís Teixeira; Ferreira, Nuno Gonçalo; Loureiro, Susana; Costa-Lotufo, Letícia Veras; Soares, Amadeu M V M

    2012-10-01

    Physiological responses can be used as effective parameters to identify environmentally stressful conditions. In this study, physiology changes such as oxygen consumption, clearance rate, survival in air, condition index and energy reserves were measured on natural populations of cockles collected from different sites at Ria de Aveiro, Portugal. At those sites, sediment samples were collected for Hg concentration analysis. Cockles were used for the evaluation of both the Hg concentration and physiological response. Mercury was detected in the cockle tissue and in the sediment collected from the sampling points both nearby and distant from the main mercury contamination source. The energy content was negatively correlated with both Hg concentration in cockle tissues and survival in air. Nonetheless, the energy content was positively correlated with the condition index, and there was a positive correlation between the survival in air test and the tissue mercury concentration. A PCA-factor analysis explained 86.8% of the total variance. The principal factor (62.7%) consisted of the air survival, the Hg in soft tissues (positive) and the condition index (negative). The second factor (24.1%) consisted of a negative correlation between the oxygen consumption and the clearance rate. Due to their sensitivity to environmental conditions, the physiological responses of cockles can be used to assess the ecological status of aquatic environments. More effort should be invested in investigating the effects of environmental perturbations on cockle health once they are a good reporter organism. PMID:22846762

  14. Complete sequence and polymorphisms of female Ruditapes philippinarum (Mollusca: Bivalvia) mitochondria genome.

    PubMed

    Hwang, Jae Yeon; Han, Geon Goo; Park, Jung Youn; Kim, Eun-Mi; An, Cheul Min; Kang, Jung-Ha; Choi, Yun-Jaie; Kim, Eun Bae

    2016-09-01

    Mitogenome of female Ruditapes philippinarum organism was sequenced, and genomic variation and phylogeny were examined in this study. Length of the mitogenome was 22 089 bp showing 94.28% of sequence identity with previously reported sequence. Total 707 single nucleotide polymorphisms, SNPs, were detected and 50 residues were non-synonymous SNPs among the 202 SNPs in protein-coding genes. Deleted genomic fragments with of 265 bp and 322 bp were observed in non-coding regions, ND2 to ND4L and ND4L to tRNA(Ile), respectively. Phylogenic analysis confirmed that used organisms were female R. philippinarum, and the species has closer evolutionary distance with genus Paphia rather than genus Meretrix. Our finding will be help to set an insight for population and evolutionary genomics of Veneroida clams as well as application to marine industry. PMID:26248000

  15. Chlorine toxicity to early life stages of freshwater mussels (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Valenti, T.W.; Cherry, D.S.; Currie, R.J.; Neves, R.J.; Jones, J.W.; Mair, R.; Kane, C.M.

    2006-01-01

    Chlorine (Cl) is a highly toxic, widely used halogen disinfectant that is present in point-source pollution discharges from wastewater treatment plants and industrial facilities. The U.S. Environmental Protection Agency freshwater criteria for Cl are 19 ??g total residual Cl (TRC)/L as a maximum 1-h average concentration and 11 ??g TRC/L as a maximum 4-d average; however, toxicological data for unionids were not used in these calculations. To address this void in the data, we conducted acute tests with glochidia from several species and 21-d bioassays with three-month-old Epioblasma capsaeformis and three-, six-, and 12-month-old Villosa iris juveniles. The 24-h lethal concentration 50 values for glochidia were between 70 and 220 ??g TRC/L, which are 2.5 to 37 times higher than those reported in other studies for cladocerans. Significant declines in growth and survivorship were observed in the 21-d test with E. capsaeformis at 20 ??g TRC/L. Lowest-observed-adverse- effects concentrations in bioassays with juvenile V. iris were higher (30-60 ??g TRC/L) but showed a significant trend of declining toxicity with increased age. Although endpoints were above water quality criteria, the long life spans of unionids and potential implications of chronic exposure to endangered juvenile mussels still warrant concern. ?? 2006 SETAC.

  16. Seawater temperature and salinity controls on Li/Ca ratios in Mytilus edulis (bivalvia) shells

    NASA Astrophysics Data System (ADS)

    Clarke, L. J.; Wanamaker, A. D., Jr.; Kreutz, K. J.; Borns, H. W., Jr.; Introne, D. S.

    2009-04-01

    In this study we have investigated the effects of seawater temperature and salinity on Li/Ca ratios in newly precipitated shell calcite in Mytilus edulis shells, since this potential temperature proxy has not been widely applied beyond brachiopods and inorganic calcite. Juvenile specimens of M. edulis collected from western Greenland were cultured in laboratory aquaria using a four-by-three factorial design that consisted of four circulating temperature baths and three salinities. New shell growth precipitated during the constrained culturing experiment was identified carefully and subsequently dissected from the shells. Following acid dissolution, Li/Ca ratios were measured by ICP-MS, enabling an assessment of temperature and salinity controls on shell Li/Ca ratios. Furthermore, measurement of Li/Ca ratios in the aquaria seawaters has enabled calculation of Li/Ca ratio partition coefficients and direct comparison to Li/Ca ratio to temperature relationships observed for brachiopods and inorganic calcite. The results of this study suggest that bivalve shell Li/Ca ratios can be used as a new temperature proxy.

  17. Growth, mortality, and reproduction of Tagelus plebeius (Bivalvia: Solecurtidae) in Southeast Brazil

    NASA Astrophysics Data System (ADS)

    da Silva, Camila Fernanda; Corte, Guilherme Nascimento; Yokoyama, Leonardo Querobim; Abrahão, Jolnnye Rodrigues; Amaral, Antônia Cecília Zacagnini

    2015-03-01

    Tagelus plebeius (Lightfoot, 1786) is a stout razor clam that is economically exploited in several countries, including several local fisheries along the Brazilian coast. Despite its wide distribution and economic importance, there are few studies that have examined the population biology of this species. This study aimed to improve the current knowledge about the biology of T. plebeius by investigating its growth and mortality on a subtropical sandy beach in Southeast Brazil over a 1-year period. In addition, the reproduction of T. plebeius was analyzed through qualitative and quantitative histological analyses during the last 7 months of the study. The parameters of the von Bertalanffy growth function were estimated to be L ∞ = 74.14 mm, K = 0.52 year-1, C = 0.47, and WP = 0.94. The instantaneous mortality rate ( Z) was 2.16 year-1, and the life span was 2.58 years. We confirmed variations ( H = 651.35; P < 0.05) in the shell length over the months of the study, and the recruitment was higher—but still low—in summer. Four cohorts were observed in the distribution of shell length frequencies. The sex ratio of the population was 1:1 during the study period, and a synchronism in gonadal development and spawning was found between males and females. The high mortality ( Z) and low recruitment rates can be interpreted as reflecting that the population of T. plebeius is under a low restoration process and could be an indication that this species has an endangered status in the study area.

  18. Arctica islandica (Bivalvia): A unique paleoenvironmental archive of the northern North Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Schöne, Bernd R.

    2013-12-01

    High-resolution environmental proxy data from the extratropical North Atlantic prior to the instrumental era are of critical importance to decipher processes and mechanisms of global change. In this regard, shells of the extremely long-lived bivalve mollusc, Arctica islandica (Linnaeus, 1767), have gained particular attention during the last decade because they serve as reliable, subseasonally resolved multi-proxy archives of environmental variability in that very region. With a lifespan of more than 500 years, A. islandica is the longest-lived solitary animal. Its shell grows periodically throughout life and contains distinct annual and daily growth increments. These growth patterns function as a calendar that can be used to place each shell portion into a precise temporal context. Furthermore, changing environmental conditions are encoded in the shells in the form of variable increment widths and geochemical properties. By means of cross-dating, growth increment width chronologies from different specimens can be combined into much longer time-series, so-called composite or master chronologies, covering centuries to millennia and many generations of bivalves. The present paper provides a comprehensive review of research on this species with a special focus on long-term climate and environmental reconstructions using isotopes, trace and minor elements and variations in shell growth. This review also highlights challenges involved with the interpretation of proxy data obtained from A. islandica and identifies future research needs. A. islandica does not easily reveal its secrets. It needs a holistic approach to unlock the multi-proxy records stored in their shells. The goal of this paper is to increase the recognition of this high-potential natural archive and encourage future interdisciplinary research.

  19. Mesozoic Bivalvia from Clerke and Mermaid Canyons, northwest Australian continental slope

    NASA Astrophysics Data System (ADS)

    Grant-Mackie, J. A.

    Four sets of rock samples from two sites off the northwest Australian shelf in 3625-4480 m of water contain macrofaunas, mainly bivalves, of warm shallow-water origin. Mermaid Canyon (16 deg 19 min S, 118 deg 23 min E) provided many samples of oolitic calcarenite containing Pseudopecten (Pseudopecten) dugong n.sp., indicating an Early Jurassic age and Tethyan relationship. Three hand-specimens from the ridge forming the western edge of Clerke Canyon (16 deg 29 min S, 118 deg 30 min E) yielded a Norian coral-?Lima-oyster assemblage and the Norian-Rhaetian bivalve Palaeocardita aff. globiformis (Boettger). The latter shows relationship with south-east Asian (Indonesia-Vietnam-south China) forms.

  20. A biomechanical model of rock drilling in the piddock Barnea candida (Bivalvia; Mollusca)

    PubMed Central

    Nederlof, Ralf; Muller, Mees

    2012-01-01

    The bivalve Barnea candida (Pholadacea) makes its burrow in clay, soft rock and peat. Barnea has developed a number of adaptations to accommodate this lifestyle. Four muscles enable burrowing. These are situated around a dorsal pivot in such a way that the piddock is able to rotate the shells around two approximate orthogonal axes. The anterior adductor muscle anterior (AAM-A) and the posterior adductor muscle rotate the shells around a dorso-ventral axis; the anterior adductor muscle posterior (AAM-P) and the ventral adductor muscle rotate the shells around an antero-posterior axis. The AAM-A and the AAM-P have evolved from a single anterior adductor muscle and are attached to a piece of the shell that is folded inside out, the umbonal reflection. At the dorsal side of the piddock, the shell margins are reduced. This prevents collision of these margins during movement. Electrical stimulation experiments revealed that the opening of the antero-ventral side of the piddock is faster than its closure. These results were incorporated into a computer model that could simulate shell movements. The computer model allowed predictions about the shapes of burrows and scrape marks. As in Nature, simulated burrows had a long droplet shape with straight scrape marks. PMID:22696480

  1. Ecotoxicological evaluation of tributyltin toxicity to the equilateral venus clam, Gomphina veneriformis (Bivalvia: Veneridae).

    PubMed

    Park, Kiyun; Kim, Rosa; Park, Jung Jun; Shin, Hyun Chool; Lee, Jung Sick; Cho, Hyeon Seo; Lee, Yeon Gyu; Kim, Jongkyu; Kwak, Inn-Sil

    2012-03-01

    Tributyltin (TBT) is the most common pesticide in marine and freshwater environments. To evaluate the potential ecological risk posed by TBT, we measured biological responses such as growth rate, gonad index, sex ratio, the percentage of intersex gonads, filtration rate, and gill abnormalities in the equilateral venus clam (Gomphina veneriformis). Additionally, the biochemical and molecular responses were evaluated in G. veneriformis exposed to various concentrations of TBT. The growth of G. veneriformis was significantly delayed in a dose-dependent manner after exposure to all tested TBT concentrations. After TBT was administered to G. veneriformis, the gonad index decreased and the sex balance was altered. The percentage of intersex gonads also increased significantly in treated females, whereas no intersex gonads were detected in the solvent control group. Additionally, intersex gonads were detected in male G. veneriformis specimens exposed to relatively high TBT concentrations (20 μg L⁻¹). The filtration rate was also reduced in a dose-dependent manner in TBT-exposed G. veneriformis. We also noted abnormal gill morphology in TBT-exposed G. veneriformis. Furthermore, increases in antioxidant enzyme activities were observed in TBT-exposed G. veneriformis clams, regardless of dosage. Vitellogenin gene expression also increased significantly in a dose-dependent manner in G. veneriformis exposed to TBT. These results provide valuable information regarding our understanding of the toxicology of TBT in G. veneriformis. Moreover, the responses of biological and molecular factors could be utilized as information for risk assessments and marine monitoring of TBT toxicity. PMID:22182740

  2. The complete mitogenome of the marine bivalve Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae).

    PubMed

    Gan, Han Ming; Tan, Mun Hua; Thai, Binh Thanh; Austin, Christopher M

    2016-01-01

    The complete mitochondrial genome of the commercially important snout otter clam Lutraria rhynchaena was obtained from low-coverage shotgun sequencing data on the MiSeq platform. The L. rhynchaena mitogenome has 16,927 base pairs (69% A + T content) and made up of 12 protein-coding genes, 2 ribosomal subunit genes, 22 transfer RNAs, and a 953 bp non-coding AT-rich region. This is the first mitogenome to be sequenced from the genus Lutraria, and the seventh to be reported for the family Mactridae. PMID:24617474

  3. Direct evidence for maternal inheritance of bacterial symbionts in small deep-sea clams (Bivalvia: Vesicomyidae).

    PubMed

    Szafranski, Kamil M; Gaudron, Sylvie M; Duperron, Sébastien

    2014-05-01

    Bacterial symbiont transmission is a key step in the renewal of the symbiotic interaction at each host generation, and different modes of transmission can be distinguished. Vesicomyidae are chemosynthetic bivalves from reducing habitats that rely on symbiosis with sulfur-oxidizing bacteria, in which two studies suggesting vertical transmission of symbionts have been published, both limited by the imaging techniques used. Using fluorescence in situ hybridization and transmission electron microscopy, we demonstrate that bacterial symbionts of Isorropodon bigoti, a gonochoristic Vesicomyidae from the Guiness cold seep site, occur intracellularly within female gametes at all stages of gametogenesis from germ cells to mature oocytes and in early postlarval stage. Symbionts are completely absent from the male gonad and gametes. This study confirms the transovarial transmission of symbionts in Vesicomyidae and extends it to the smaller species for which no data were previously available. PMID:24622961

  4. The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae).

    PubMed

    Thubaut, Justine; Puillandre, Nicolas; Faure, Baptiste; Cruaud, Corinne; Samadi, Sarah

    2013-11-01

    Bathymodiolinae are giant mussels that were discovered at hydrothermal vents and harboring chemosynthetic symbionts. Due to their close phylogenetic relationship with seep species and tiny mussels from organic substrates, it was hypothesized that they gradually evolved from shallow to deeper environments, and specialized in decaying organic remains, then in seeps, and finally colonized deep-sea vents. Here, we present a multigene phylogeny that reveals that most of the genera are polyphyletic and/or paraphyletic. The robustness of the phylogeny allows us to revise the genus-level classification. Organic remains are robustly supported as the ancestral habitat for Bathymodiolinae. However, rather than a single step toward colonization of vents and seeps, recurrent habitat shifts from organic substrates to vents and seeps occurred during evolution, and never the reverse. This new phylogenetic framework challenges the gradualist scenarios "from shallow to deep." Mussels from organic remains tolerate a large range of ecological conditions and display a spectacular species diversity contrary to vent mussels, although such habitats are yet underexplored compared to vents and seeps. Overall, our data suggest that for deep-sea mussels, the high specialization to vent habitats provides ecological success in this harsh habitat but also brings the lineage to a kind of evolutionary dead end. PMID:24363902

  5. Direct evidence for maternal inheritance of bacterial symbionts in small deep-sea clams (Bivalvia: Vesicomyidae)

    NASA Astrophysics Data System (ADS)

    Szafranski, Kamil M.; Gaudron, Sylvie M.; Duperron, Sébastien

    2014-05-01

    Bacterial symbiont transmission is a key step in the renewal of the symbiotic interaction at each host generation, and different modes of transmission can be distinguished. Vesicomyidae are chemosynthetic bivalves from reducing habitats that rely on symbiosis with sulfur-oxidizing bacteria, in which two studies suggesting vertical transmission of symbionts have been published, both limited by the imaging techniques used. Using fluorescence in situ hybridization and transmission electron microscopy, we demonstrate that bacterial symbionts of Isorropodon bigoti, a gonochoristic Vesicomyidae from the Guiness cold seep site, occur intracellularly within female gametes at all stages of gametogenesis from germ cells to mature oocytes and in early postlarval stage. Symbionts are completely absent from the male gonad and gametes. This study confirms the transovarial transmission of symbionts in Vesicomyidae and extends it to the smaller species for which no data were previously available.

  6. Geographical variation in shell shape of the pod razor shell Ensis siliqua (Bivalvia: Pharidae)

    NASA Astrophysics Data System (ADS)

    Rufino, Marta M.; Vasconcelos, Paulo; Pereira, Fábio; Fernández-Tajes, Juan; Darriba, Susana; Méndez, Josefina; Gaspar, Miguel B.

    2013-03-01

    The present study assessed the existence of variation in the shell shape of the pod razor shell ( Ensis siliqua) throughout its distributional range in the north-eastern Atlantic. Shells of E. siliqua caught at seven collecting sites (three in Portugal, three in Spain and one in Ireland) were studied by geometric morphometric methods, using both landmark- and contour-based methods. Both approaches (landmarks inside the valves and shell outline) discriminated the shells from Aveiro (centre of Portugal) and Strangford Lough (Ireland) from those caught in the nearby localities (remaining Portuguese and Spanish sites, maximum distance of 550 km by sea). Landmark analysis revealed that shells from Aveiro were more similar to shells from Ireland (~1,500 km far away). Contour analysis revealed that shells from Aveiro had a shape with a comparatively larger height-to-width ratio, whereas shells from Ireland showed a slightly more curved outline than in the remaining sites. Landmark- and contour-based methods provided coherent complementary information, confirming the usefulness of geometric morphometric analyses for discerning differences in shell shape among populations of E. siliqua. A brief review of previous applications of geometric morphometric methods to modern bivalve species is also provided.

  7. Molecular phylogenetics and historical biogeography amid shifting continents in the cockles and giant clams (Bivalvia: Cardiidae).

    PubMed

    Herrera, Nathanael D; Ter Poorten, Jan Johan; Bieler, Rüdiger; Mikkelsen, Paula M; Strong, Ellen E; Jablonski, David; Steppan, Scott J

    2015-12-01

    Reconstructing historical biogeography of the marine realm is complicated by indistinct barriers and, over deeper time scales, a dynamic landscape shaped by plate tectonics. Here we present the most extensive examination of model-based historical biogeography among marine invertebrates to date. We conducted the largest phylogenetic and molecular clock analyses to date for the bivalve family Cardiidae (cockles and giant clams) with three unlinked loci for 110 species representing 37 of the 50 genera. Ancestral ranges were reconstructed using the dispersal-extinction-cladogenesis (DEC) method with a time-stratified paleogeographic model wherein dispersal rates varied with shifting tectonics. Results were compared to previous classifications and the extensive paleontological record. Six of the eight prior subfamily groupings were found to be para- or polyphyletic. Cardiidae originated and subsequently diversified in the tropical Indo-Pacific starting in the Late Triassic. Eastern Atlantic species were mainly derived from the tropical Indo-Mediterranean region via the Tethys Sea. In contrast, the western Atlantic fauna was derived from Indo-Pacific clades. Our phylogenetic results demonstrated greater concordance with geography than did previous phylogenies based on morphology. Time-stratifying the DEC reconstruction improved the fit and was highly consistent with paleo-ocean currents and paleogeography. Lastly, combining molecular phylogenetics with a rich and well-documented fossil record allowed us to test the accuracy and precision of biogeographic range reconstructions. PMID:26234273

  8. Oceanographic conditions govern shell growth of Arctica islandica (Bivalvia) in surface waters off Northeast Iceland

    NASA Astrophysics Data System (ADS)

    Marali, Soraya; Schöne, Bernd R.

    2015-04-01

    Shells of the long-lived bivalve Arctica islandica provide absolutely dated, highly resolved archives of environmental variability in the extratropical realm. Shell growth rates of contemporaneous A. islandica specimens are synchronized by one or several environmental factor(s), such as seawater temperature, food supply etc. Based on the growth synchrony, increment width records can be combined to composite chronologies. However, according to existing studies, A. islandica specimens from shallow waters do not show synchronous changes in shell growth and may thus not provide information about environmental conditions such as sea surface temperature. Here, we present the first statistically robust composite chronology of A. islandica from unpolluted surface waters (8-23 m) off Northeast Iceland. The complete record spans the time interval of 1835 to 2012. Times of enhanced shell growth coincide with periods of higher temperature and elevated food supply. Instrumental sea surface temperature (SST) during the growing season explains up to 43% of the variation in relative shell growth. However, the correlation strength varies over time. When the environmental conditions at the sampling site were stable over many consecutive years, i.e. one of the two major surface currents (the warm, nutrient-rich Irminger Current or the cold, nutrient-deficient East Icelandic Current) predominated the area over longer time intervals, the growth synchrony among coeval A. islandica weakened and the correlation between shell growth and SSTs was markedly reduced. Conversely, if the habitat was under the alternating influence of both ocean currents, shell growth was stronger correlated to each other and to SST. Thus, environmental variability is required to synchronize shell growth rates within an A. islandica population. This study further enlightens the relationship between bivalve shell growth and environmental variables.

  9. Organization pattern of nacre in Pteriidae (Bivalvia: Mollusca) explained by crystal competition

    PubMed Central

    Checa, Antonio G; Okamoto, Takashi; Ramírez, Joaquín

    2006-01-01

    Bivalve nacre is a brick-wall-patterned biocomposite of aragonite platelets surrounded by organic matter. SEM–electron back scatter diffraction analysis of nacre of the bivalve family Pteriidae reveals that early aragonite crystals grow with their c-axes oriented perpendicular to the growth surface but have their a- and b-axes disoriented. With the accumulation of successive lamellae, crystals progressively orient themselves with their b-axes mutually parallel and towards the growth direction. We propose that progressive orientation is a result of competition between nacre crystals at the growth front of lamellae, which favours selection of crystals whose fastest growth axis (b-axis) is oriented parallel to the direction of propagation of the lamella. A theoretical model has been developed, which simulates competition of rhombic plates at the lamellar growth front as well as epitaxial growth of crystals onto those of the preceding lamella. The model predicts that disordered nacre progressively produces bivalve-like oriented nacre. As growth fronts become diffuse (as is the common case in bivalves) it takes longer for nacre to become organized. Formation of microdomains of nacre platelets with different orientations is also reproduced. In conclusion, not only the organic matrix component, but also the mineral phase plays an active role in organizing the final microstructure. PMID:16777720

  10. Phylogeny and androgenesis in the invasive Corbicula clams (Bivalvia, Corbiculidae) in Western Europe

    PubMed Central

    2011-01-01

    Background The genus Corbicula is one of the most invasive groups of molluscs. It includes both sexual and androgenetic lineages. The present study re-assessed the different morphotypes and haplotypes of West European Corbicula in order to clarify their taxonomic identification and phylogenetic relationships with American and Asian Corbicula clams. We studied several populations from West European river basins (Meuse, Seine, Rhine and Rhône) through an "integrative taxonomy" approach. We combined morphology, partial mitochondrial COI and cyt b sequences and eleven microsatellite loci. Furthermore, we looked for discrepancies between mtDNA and nrDNA/morphology, indicative of androgenesis between lineages. Results There are three Corbicula morphotypes in Western Europe associated to three mitochondrial lineages and three genotypes. Form R shares the same COI haplotype as the American form A and the Japanese C. leana. Form S and the American form C have the same haplotype, although their morphologies seem divergent. The European form Rlc belongs to the same mitochondrial lineage as both the American form B and the Asian C. fluminea. Interestingly, within each haplotype/genotype or lineage, no genetic diversity was found although their invasive success is high. Moreover, we detected rare mismatches between mtDNA and nrDNA/morphology, indicative of androgenesis and mitochondrial capture between form R and form S and therefore challenging the phylogenetic relatedness and the species status within this genus. The global phylogenetic analysis revealed that the sexual Corbicula lineages seem restricted to the native areas while their androgenetic relatives are widespread and highly invasive. Conclusions We clarified the discrepancies and incongruent results found in the literature about the European morphotypes of Corbicula and associated mitochondrial lineages. The three West European morphotypes belong to three distinct nuclear and mitochondrial lineages. However mitochondrial capture occurs in sympatric populations of forms R and S. The species status of the morphotypes therefore remains doubtful. Moreover the androgenetic lineages seem widely distributed compared to their sexual relatives, suggesting that androgenesis and invasive success may be linked in the genus Corbicula. PMID:21619630

  11. Novel Microsatellite Markers of Meretrix petechialis and Cross-species Amplification in Related Taxa (Bivalvia: Veneroida)

    PubMed Central

    Kang, Jung-Ha; Kim, Byeng-Hak; Park, Jung-Youn; Lee, Jung-Mi; Jeong, Ji-Eun; Lee, Jun-Sang; Ko, Hyun-Sook; Lee, Yong-Seok

    2012-01-01

    The Asian hard clam, Meretrix petechialis, is an economically important bivalve, but its catch and population sizes are decreasing rapidly, owing to many factors, including large-scale reclamation of its natural habitat on the western coast of the Korean peninsula. Attempts to restore the resources and production of this species require genetic structure and diversity information. In this study, we developed 15 microsatellite markers from a partial genomic library enriched in GT repeats. Nine of these markers were polymorphic, with an average allele number of six, and six were monomorphic in 95 tested individuals. No linkage disequilibrium was found between any pair of loci (p > 0.05), and deviations from the Hardy–Weinberg equilibrium (HWE) test showing excess of heterozygotes was observed in only one of nine loci. In addition, no null alleles or genetic differentiation between two tested populations were detected. A cross-species amplification in 12 species of four families resulted in two M. petechialis-specific loci and three possible universal markers. This information will be useful in the future development of high-quality artificial seedlings and sustainable resource management. PMID:23443103

  12. Oocyte Degeneration Associated with Follicle Cells in Female Mactra chinensis (Bivalvia: Mactridae)

    PubMed Central

    Kim, Sung Han; Chung, Ee-Yung; Lee, Ki-Young

    2014-01-01

    Ultrastructural studies of oocyte degeneration in the oocyte, and the functions of follicle cells during oocyte degeneration are described to clarify the reproductive mechanism on oocyte degeneration of Mactra chinensis using cytological methods. Commonly, the follicle cells are attached to the oocyte. Follicle cells play an important role in oocyte degeneration. In particular, the functions of follicle cells during oocyte degeneration are associated with phagocytosis and the intracellular digestion of products. In this study, morphologically similar degenerated phagosomes (various lysosomes), which were observed in the degenerated oocytes, appeared in the follicle cells. After the spawning of the oocytes, the follicle cells were involved in oocyte degeneration through phagocytosis by phagolysosomes. Therefore, it can be assumed that follicle cells reabsorb phagosomes from degenerated oocytes. In this study, the presence of lipid granules, which occurred from degenerating yolk granules, gradually increased in degenerating oocytes. The function of follicle cells can accumulate reserves of lipid granules and glycogen in the cytoplasm, which can be employed by the vitellogenic oocyte. Based on observations of follicle cells attached to degenerating oocytes after spawning, the follicle cells of this species are involved in the lysosomal induction of oocyte degeneration for the reabsorption of phagosomes (phagolysosomes) in the cytoplasm for nutrient storage, as seen in other bivalves. PMID:25949203

  13. Intraspecific phylogeography of Lasmigona subviridis (Bivalvia: Unionidae): conservation implications of range discontinuity.

    PubMed

    King, T L; Eackles, M S; Gjetvaj, B; Hoeh, W R

    1999-12-01

    A nucleotide sequence analysis of the first internal transcribed spacer region (ITS-1) between the 5.8S and 18S ribosomal DNA genes (640 bp) and cytochrome c oxidase subunit I (COI) of mitochondrial DNA (mtDNA) (576 bp) was conducted for the freshwater bivalve Lasmigona subviridis and three congeners to determine the utility of these regions in identifying phylogeographic and phylogenetic structure. Sequence analysis of the ITS-1 region indicated a zone of discontinuity in the genetic population structure between a group of L. subviridis populations inhabiting the Susquehanna and Potomac Rivers and more southern populations. Moreover, haplotype patterns resulting from variation in the COI region suggested an absence of gene exchange between tributaries within two different river drainages, as well as between adjacent rivers systems. The authors recommend that the northern and southern populations, which are reproductively isolated and constitute evolutionarily significant lineages, be managed as separate conservation units. Results from the COI region suggest that, in some cases, unionid relocations should be avoided between tributaries of the same drainage because these populations may have been reproductively isolated for thousands of generations. Therefore, unionid bivalves distributed among discontinuous habitats (e.g. Atlantic slope drainages) potentially should be considered evolutionarily distinct. The DNA sequence divergences observed in the nuclear and mtDNA regions among the Lasmigona species were congruent, although the level of divergence in the COI region was up to three times greater. The genus Lasmigona, as represented by the four species surveyed in this study, may not be monophyletic. PMID:10703552

  14. Clarifying phylogenetic relationships and the evolutionary history of the bivalve order Arcida (Mollusca: Bivalvia: Pteriomorphia).

    PubMed

    Combosch, David J; Giribet, Gonzalo

    2016-01-01

    The systematics of the bivalve order Arcida constitutes an unresolved conundrum in bivalve systematics. The current definition of Arcida encompasses two superfamilies: Limopsoidea, which includes the recent families Philobryidae and Limopsidae, and Arcoidea, which encompasses the families Arcidae, Cucullaeidae, Noetiidae, Glycymerididae and Parallelodontidae. This classification, however, is controversial particularly with respect to the position and taxonomic status of Glycymerididae. Previous molecular phylogenies were limited either by the use of only a single molecular marker or by including only a few limopsoid and glycymeridid taxa. The challenging nature of Arcida taxonomy and the controversial results of some of the previous studies, prompted us to use a broad range of taxa (55 species), three nuclear markers (18S rRNA, 28S rRNA and histone H3) and a wide range of algorithmic approaches. This broad but stringent approach led to a number of results that differ significantly from previous studies. We provide the first molecular evidence that supports the separation of Arcoidea from Limopsoidea, although the exact position of Glycymerididae remains unresolved, and the monophyly of Limopsoidea is algorithm-dependent. In addition, we present the first time-calibrated evolutionary tree of Arcida relationships, indicating a significant increase in the diversification of arcidan lineages at the beginning of the Cretaceous, around 140Ma. The monophyly of Arcida, which has been supported previously, was confirmed in all our analyses. Although relationships among families remain somehow unresolved we found support for the monophyly of most arcidan families, at least under some analytical conditions (i.e., Glycymerididae, Noetiidae, Philobryidae, and Limopsidae). However, Arcidae, and particularly Arcinae, remain a major source of inconsistency in the current system of Arcida classification and are in dire need of taxonomic revision. PMID:26427825

  15. Microbial distribution and abundance in the digestive system of five shipworm species (Bivalvia: Teredinidae).

    PubMed

    Betcher, Meghan A; Fung, Jennifer M; Han, Andrew W; O'Connor, Roberta; Seronay, Romell; Concepcion, Gisela P; Distel, Daniel L; Haygood, Margo G

    2012-01-01

    Marine bivalves of the family Teredinidae (shipworms) are voracious consumers of wood in marine environments. In several shipworm species, dense communities of intracellular bacterial endosymbionts have been observed within specialized cells (bacteriocytes) of the gills (ctenidia). These bacteria are proposed to contribute to digestion of wood by the host. While the microbes of shipworm gills have been studied extensively in several species, the abundance and distribution of microbes in the digestive system have not been adequately addressed. Here we use Fluorescence In-Situ Hybridization (FISH) and laser scanning confocal microscopy with 16S rRNA directed oligonucleotide probes targeting all domains, domains Bacteria and Archaea, and other taxonomic groups to examine the digestive microbiota of 17 specimens from 5 shipworm species (Bankia setacea, Lyrodus pedicellatus, Lyrodus massa, Lyrodus sp. and Teredo aff. triangularis). These data reveal that the caecum, a large sac-like appendage of the stomach that typically contains large quantities of wood particles and is considered the primary site of wood digestion, harbors only very sparse microbial populations. However, a significant number of bacterial cells were observed in fecal pellets within the intestines. These results suggest that due to low abundance, bacteria in the caecum may contribute little to lignocellulose degradation. In contrast, the comparatively high population density of bacteria in the intestine suggests a possible role for intestinal bacteria in the degradation of lignocellulose. PMID:23028923

  16. Transfection of eggs in the bivalve mollusc Chamelea gallina (Bivalvia, Veneridae).

    PubMed

    Guerra, R; Esponda, P

    2006-04-01

    Eggs from the bivalve mollusc Chamelea gallina were transfected in vitro. The p-GeneGrip gene construction that expresses the green fluorescent protein (GFP) was employed. It was necessary to remove the jelly coat which covers the egg surface for a successful transfection, and then 44.2% of gametes appeared transfected after using naked DNA. On the other hand, cationic liposomes (Lipofectamine) and neutral lipids (GenePORTER) were employed as gene vectors. After the employ of Lipofectamine 35.6% of eggs were transfected and 41.4% after using GenePORTER. Fluorescence analysis showed that the foreign gene appeared principally located in the egg cytoplasm, but laser confocal microscopy showed that it was also present in the nucleus. Furthermore, PCR analysis demonstrated that the foreign DNA appeared in the DNA extracted from the treated eggs. This simple method for the transfection of mollusc eggs would be interesting for future biotechnological applications in species of commercial interest. PMID:17283962

  17. The influence of salinity on the heat-shock protein response of Potamocorbula amurensis (Bivalvia).

    PubMed

    Werner, Ingeborg

    2004-01-01

    For biomarkers to be useful in assessing anthropogenic impacts in field studies involving aquatic organisms, they should not be affected by naturally occurring changes in environmental parameters such as salinity. This is especially important in estuarine environments and for relatively unspecific biomarkers like heat-shock proteins (hsps, stress proteins). In this study, the heat-shock protein response was measured in the euryhaline clam, Potamocorbula amurensis, after exposure to a range of salinities reflecting normal and extreme environmental conditions in Northern San Francisco Bay, California. The ability to raise cellular hsp70 levels in response to heat-shock was significantly impaired in P. amurensis collected from a low (0.5 ppt) salinity field site, and after 14 day exposure to low salinity in the laboratory. PMID:15178117

  18. Microbial Distribution and Abundance in the Digestive System of Five Shipworm Species (Bivalvia: Teredinidae)

    PubMed Central

    Betcher, Meghan A.; Fung, Jennifer M.; Han, Andrew W.; O’Connor, Roberta; Seronay, Romell; Concepcion, Gisela P.; Distel, Daniel L.; Haygood, Margo G.

    2012-01-01

    Marine bivalves of the family Teredinidae (shipworms) are voracious consumers of wood in marine environments. In several shipworm species, dense communities of intracellular bacterial endosymbionts have been observed within specialized cells (bacteriocytes) of the gills (ctenidia). These bacteria are proposed to contribute to digestion of wood by the host. While the microbes of shipworm gills have been studied extensively in several species, the abundance and distribution of microbes in the digestive system have not been adequately addressed. Here we use Fluorescence In-Situ Hybridization (FISH) and laser scanning confocal microscopy with 16S rRNA directed oligonucleotide probes targeting all domains, domains Bacteria and Archaea, and other taxonomic groups to examine the digestive microbiota of 17 specimens from 5 shipworm species (Bankia setacea, Lyrodus pedicellatus, Lyrodus massa, Lyrodus sp. and Teredo aff. triangularis). These data reveal that the caecum, a large sac-like appendage of the stomach that typically contains large quantities of wood particles and is considered the primary site of wood digestion, harbors only very sparse microbial populations. However, a significant number of bacterial cells were observed in fecal pellets within the intestines. These results suggest that due to low abundance, bacteria in the caecum may contribute little to lignocellulose degradation. In contrast, the comparatively high population density of bacteria in the intestine suggests a possible role for intestinal bacteria in the degradation of lignocellulose. PMID:23028923

  19. Using DNA barcoding to differentiate invasive Dreissena species (Mollusca, Bivalvia)

    PubMed Central

    Marescaux, Jonathan; Van Doninck, Karine

    2013-01-01

    Abstract The zebra mussel (Dreissena polymorpha) and the quagga mussel (Dreissena rostriformis bugensis) are considered as the most competitive invaders in freshwaters of Europe and North America. Although shell characteristics exist to differentiate both species, phenotypic plasticity in the genus Dreissena does not always allow a clear identification. Therefore, the need to find an accurate identification method is essential. DNA barcoding has been proven to be an adequate procedure to discriminate species. The cytochrome c oxidase subunit I mitochondrial gene (COI) is considered as the standard barcode for animals. We tested the use of this gene as an efficient DNA barcode and found that it allow rapid and accurate identification of adult Dreissena individuals. PMID:24453560

  20. Using DNA barcoding to differentiate invasive Dreissena species (Mollusca, Bivalvia).

    PubMed

    Marescaux, Jonathan; Van Doninck, Karine

    2013-12-30

    The zebra mussel (Dreissena polymorpha) and the quagga mussel (Dreissena rostriformis bugensis) are considered as the most competitive invaders in freshwaters of Europe and North America. Although shell characteristics exist to differentiate both species, phenotypic plasticity in the genus Dreissena does not always allow a clear identification. Therefore, the need to find an accurate identification method is essential. DNA barcoding has been proven to be an adequate procedure to discriminate species. The cytochrome c oxidase subunit I mitochondrial gene (COI) is considered as the standard barcode for animals. We tested the use of this gene as an efficient DNA barcode and found that it allow rapid and accurate identification of adult Dreissena individuals. PMID:24453560

  1. Biology and Population Dynamics of Donax trunculus L. (Bivalvia: Donacidae) in the South Adriatic Coast (Italy)

    NASA Astrophysics Data System (ADS)

    Zeichen, M. Manca; Agnesi, S.; Mariani, A.; Maccaroni, A.; Ardizzone, G. D.

    2002-06-01

    Biology and population dynamics of the suspension-feeding wedge clam Donax trunculus (Linnaeus, 1758) were studied for 13 months (November 1994-April 1996) along the Italian Southern Adriatic coast near the Lagoon of Lesina. Specimens were found at depths between 0 and 2 m, mainly in fine grain bottoms. The spatial coastal distribution showed an intraspecific segregation between young and adult wedge clams. A unimodal recruitment (length >4 mm) occurred in winter (December-February). Length frequency distributions were used to determine age and growth rate. Three year classes were regularly observed and their growth pattern defined. The population showed a maximum length of 37 mm and a longevity of 4 years. Analysis of seasonal variations in the reproductive cycle showed that gametogenesis occurred in spring in females. After the spawning season (March-July) females of D. trunculus remained in a resting stage from August to January.

  2. Lifespan, growth rate, and body size across latitude in marine Bivalvia, with implications for Phanerozoic evolution.

    PubMed

    Moss, David K; Ivany, Linda C; Judd, Emily J; Cummings, Patrick W; Bearden, Claire E; Kim, Woo-Jun; Artruc, Emily G; Driscoll, Jeremy R

    2016-08-17

    Mean body size in marine animals has increased more than 100-fold since the Cambrian, a discovery that brings to attention the key life-history parameters of lifespan and growth rate that ultimately determine size. Variation in these parameters is not well understood on the planet today, much less in deep time. Here, we present a new global database of maximum reported lifespan and shell growth coupled with body size data for 1 148 populations of marine bivalves and show that (i) lifespan increases, and growth rate decreases, with latitude, both across the group as a whole and within well-sampled species, (ii) growth rate, and hence metabolic rate, correlates inversely with lifespan, and (iii) opposing trends in lifespan and growth combined with high variance obviate any demonstrable pattern in body size with latitude. Our observations suggest that the proposed increase in metabolic activity and demonstrated increase in body size of organisms over the Phanerozoic should be accompanied by a concomitant shift towards faster growth and/or shorter lifespan in marine bivalves. This prediction, testable from the fossil record, may help to explain one of the more fundamental patterns in the evolutionary and ecological history of animal life on this planet. PMID:27488653

  3. Molecular Cytogenetics in Trough Shells (Mactridae, Bivalvia): Divergent GC-Rich Heterochromatin Content.

    PubMed

    García-Souto, Daniel; Pérez-García, Concepción; Kendall, Jack; Pasantes, Juan J

    2016-01-01

    The family Mactridae is composed of a diverse group of marine organisms, commonly known as trough shells or surf clams, which illustrate a global distribution. Although this family includes some of the most fished and cultured bivalve species, their chromosomes are poorly studied. In this work, we analyzed the chromosomes of Spisula solida, Spisula subtruncata and Mactra stultorum by means of fluorochrome staining, C-banding and fluorescent in situ hybridization using 28S ribosomal DNA (rDNA), 5S rDNA, H3 histone gene and telomeric probes. All three trough shells presented 2n = 38 chromosomes but different karyotype compositions. As happens in most bivalves, GC-rich regions were limited to the nucleolus organizing regions in Spisula solida. In contrast, many GC-rich heterochromatic bands were detected in both Spisula subtruncata and Mactra stultorum. Although the three trough shells presented single 5S rDNA and H3 histone gene clusters, their chromosomal locations differed. Regarding major rDNA clusters, while Spisula subtruncata presented a single cluster, both Spisula solida and Mactra stultorum showed two. No evidence of intercalary telomeric signals was detected in these species. The molecular cytogenetic characterization of these taxa will contribute to understanding the role played by chromosome changes in the evolution of trough shells. PMID:27537915

  4. Comparative Large-Scale Mitogenomics Evidences Clade-Specific Evolutionary Trends in Mitochondrial DNAs of Bivalvia

    PubMed Central

    Plazzi, Federico; Puccio, Guglielmo; Passamonti, Marco

    2016-01-01

    Despite the figure of complete bivalve mitochondrial genomes keeps growing, an assessment of the general features of these genomes in a phylogenetic framework is still lacking, despite the fact that bivalve mitochondrial genomes are unusual under different aspects. In this work, we constructed a dataset of one hundred mitochondrial genomes of bivalves to perform the first systematic comparative mitogenomic analysis, developing a phylogenetic background to scaffold the evolutionary history of the class' mitochondrial genomes. Highly conserved domains were identified in all protein coding genes; however, four genes (namely, atp6, nad2, nad4L, and nad6) were found to be very divergent for many respects, notwithstanding the overall purifying selection working on those genomes. Moreover, the atp8 gene was newly annotated in 20 mitochondrial genomes, where it was previously declared as lacking or only signaled. Supernumerary mitochondrial proteins were compared, but it was possible to find homologies only among strictly related species. The rearrangement rate on the molecule is too high to be used as a phylogenetic marker, but here we demonstrate for the first time in mollusks that there is correlation between rearrangement rates and evolutionary rates. We also developed a new index (HERMES) to estimate the amount of mitochondrial evolution. Many genomic features are phylogenetically congruent and this allowed us to highlight three main phases in bivalve history: the origin, the branching of palaeoheterodonts, and the second radiation leading to the present-day biodiversity. PMID:27503296

  5. Reproductive Cycle of Hard Clam, Meretrix lyrata Sowerby, 1851 (Bivalvia: Veneridae) from Sarawak, Malaysia

    PubMed Central

    Hamli, Hadi; Idris, Mohd Hanafi; Rajaee, Amy Halimah; Kamal, Abu Hena Mustafa

    2015-01-01

    A study of the reproductive cycle of the hard clam, Meretrix lyrata, was documented based on histological observation and Gonad Index (GI). Samples were taken from estuarine waters of the Buntal River in Sarawak, Malaysia. The gonad of M. lyrata started to develop in September 2013. Gametogenesis continued to develop until the maturation and spawning stage from February to April 2014. The GI pattern for a one-year cycle showed a significant correlation with chlorophyll a. The corresponding GI with chlorophyll a suggested that the development of the reproductive cycle of M. lyrata required a high amount of food to increase gametogenesis. PMID:26868710

  6. The unionid (Bivalvia) fauna of the Sipsey River in northwestern Alabama, an aquatic hotspot

    USGS Publications Warehouse

    McCullagh, W.H.; Williams, J.D.; McGregor, S.W.; Pierson, J.M.; Lydeard, C.

    2002-01-01

    Recent surveys for unionid bivalves were conducted in the mainstem of the Sipsey River and headwater tributaries (Tombigbee River drainage) during the summer and autumn of 1996-1999. A total of 35 species and 22 genera were found. Museum records from the upper Sipsey, based largely on the efforts of H. H. Smith during 1910-11, raised the total number of recorded unionids in the Sipsey to 42. Smith documented 25 species in the river; however, most of his collections were made in the mid- to upper-Sipsey, which has lower diversity. The three most common recently observed species in descending order of abundance were Quadrula asperata (I. Lea, 1861), Pleurobema decisum (I. Lea, 1831), and Tritogonia verrucosa (Rafinesque, 1820). Federally listed species observed recently include Lampsilis perovalis (Conrad, 1834) (threatened), Medionidus acutissimus (I. Lea, 1831) (threatened), P. decisum (endangered), P. perovatum (Conrad, 1834) (endangered), and Potamilus inflatus (I. Lea, 1831) (threatened). Species not observed recently but recorded in prior surveys include Anodontoides radiatus (Conrad, 1834), Arcidens confragosus (Say, 1829), Plectomerus dombeyanus (Valenciennes, 1827), Q. metanevra (Rafinesque, 1820), Q. stapes (I. Lea, 1831) (federally endangered), P. taitianum (I. Lea, 1834) (federally endangered), and Toxolasma parvus (Barnes, 1823). Many, species are known recently or historically by only five or fewer recorded specimens including: A. radiatus, Elliptio arctata (Conrad, 1834), Ligumia recta (Lamarck, 1819), P. taitianum, P. inflatus, Q. aspera (Lea, 1831), Q. metanevra, Q. stapes, T. parvus, Truncilla donaciformis (I. Lea, 1828), Uniomerus tetralasmus (Say, 1831), Utterbackia imbecillis (Say, 1829), A. confragosus, and P. dombeyanus. Unlike the mussel fauna of most Alabama streams, that of the Sipsey River is still relatively intact in terms of species richness despite impacts from mining, silvicultural, and agricultural activities. A concerted effort should be made to provide guidelines to manage floodplain and watershed activities to avoid future adverse impacts on this aquatic hotspot.

  7. Reproductive cycle and gonad development of the Northern Argentinean Mesodesma mactroides (Bivalvia: Mesodesmatidae)

    NASA Astrophysics Data System (ADS)

    Herrmann, Marko; Alfaya, José E. F.; Lepore, Mauro L.; Penchaszadeh, Pablo E.; Laudien, Jürgen

    2009-09-01

    The reproductive cycle and gonad development of the yellow clam Mesodesma mactroides was studied over a period of 24 months (January 2005-December 2006) at the Argentinean sandy beach Santa Teresita. Histological examination of gonadal tissue revealed that sex ratios did not significantly deviate from the proportion of 1:1 and no case of hermaphroditism was found. The reproductive cycle of M. mactroides followed an annual cyclicality, which was significantly correlated to monthly mean sea surface temperatures (SST). Oocytes showed highest abundance in winter, indicating a process of gonadal development and sexual maturation. The mean oocyte size decreased significantly during spring. Modal oocyte sizes decreased significantly during winter and late spring of each year, suggesting spawning events. The condition index was not useful in describing the annual reproductive cycle of M. mactroides. Ash-free, shell-free dry mass was chosen to detect the condition of the specimens, and this significantly correlated with monthly mean SST and the gametogenic cycle. Annual recruitment patterns during summer-autumn indicated a 3-month-long planktonic phase of M. mactroides. The reproduction cycle and gonad development of M. mactroides showed only weak differences between data from the present study and those collected 40 years ago.

  8. Characteristics of a refuge for native freshwater mussels (Bivalvia: Unionidae) in Lake St. Clair

    USGS Publications Warehouse

    McGoldrick, D.J.; Metcalfe-Smith, J. L.; Arts, M.T.; Schloesser, D.W.; Newton, T.J.; Mackie, G.L.; Monroe, E.M.; Biberhofer, J.; Johnson, K.

    2009-01-01

    The Lake St. Clair delta (??? 100??km2) provides an important refuge for native freshwater mussels (Unionidae) wherein 22 of the ??? 35 historical species co-occur with invasive dreissenids. A total of 1875 live unionids representing 22 species were found during snorkeling surveys of 32 shallow (??? 1??m) sites throughout the delta. Richness and density of unionids and zebra mussel infestation rates varied among sites from 3 to 13 unionid species, 0.02 to 0.12 unionids/m2, and < 1 to 35 zebra mussels/unionid, respectively. Zebra mussel infestation of unionids in the delta appears to be mitigated by dominant offshore currents, which limit densities of zebra mussel veligers in nearshore compared to offshore waters (13,600 vs. 28,000/m3, respectively). Glycogen concentrations in the tissues of a common and widespread species in the delta (Lampsilis siliquoidea) suggest that zebra mussels may be adversely affecting physiological condition of unionids in a portion of the Lake St. Clair delta. Physiological condition and community structure of unionids within the delta may also be influenced by differences in food quantity and quality resulting from the uneven distribution of water flowing from the St. Clair River. The delta likely supports the largest living unionid community in the lower Great Lakes and includes several species that have been listed as Endangered or Threatened in Canada and/or the state of Michigan, making it an important refuge for the conservation of native unionids. Crown Copyright ?? 2009.

  9. Morphological differences in Macoma balthica (Bivalvia, Tellinacea) from a Dutch and three southeastern United States estuaries

    NASA Astrophysics Data System (ADS)

    Kamermans, Pauline; Van der Veer, Henk W.; Witte, Johannes IJ.; Adriaans, Ewout J.

    1999-05-01

    Field collections of the bivalve Macoma balthica in the Dutch Wadden Sea and three southeastern United States estuaries revealed morphological differences between populations of the two sides of the Atlantic Ocean. Individuals of the same age showed much larger shell lengths at the American stations. In addition, bivalves of the same body weight had higher siphon weights at the American stations than at the Dutch stations. This difference in siphon size was related to their burying depths. The American population, which invested more in heavier siphons, was able to burrow much deeper into the sediment (up to 30 cm). Deep burial may be an adaptation to avoid exposure to the high southern temperatures. Furthermore, it may serve as a refuge from blue crab predation. The results of our comparison between the southern American population and the European support the suggestion that populations of M. balthica living in these two regions should be considered separate and sibling species.

  10. Evolutionary history of relict Congeria (Bivalvia: Dreissenidae): unearthing the subterranean biodiversity of the Dinaric Karst

    PubMed Central

    2013-01-01

    Background Patterns of biodiversity in the subterranean realm are typically different from those encountered on the Earth’s surface. The Dinaric karst of Croatia, Slovenia and Bosnia and Herzegovina is a global hotspot of subterranean biodiversity. How this was achieved and why this is so remain largely unresolved despite a long tradition of research. To obtain insights into the colonisation of the Dinaric Karst and the effects of the subterranean realm on its inhabitants, we studied the tertiary relict Congeria, a unique cave-dwelling bivalve (Dreissenidae), using a combination of biogeographical, molecular, morphological, and paleontological information. Results Phylogenetic and molecular clock analyses using both nuclear and mitochondrial markers have shown that the surviving Congeria lineage has actually split into three distinct species, i.e., C. kusceri, C. jalzici sp. nov. and C. mulaomerovici sp. nov., by vicariant processes in the late Miocene and Pliocene. Despite millions of years of independent evolution, analyses have demonstrated a great deal of shell similarity between modern Congeria species, although slight differences in hinge plate structure have enabled the description of the two new species. Ancestral plesiomorphic shell forms seem to have been conserved during the processes of cave colonisation and subsequent lineage isolation. In contrast, shell morphology is divergent within one of the lineages, probably due to microhabitat differences. Conclusions Following the turbulent evolution of the Dreissenidae during the Tertiary and major radiations in Lake Pannon, species of Congeria went extinct. One lineage survived, however, by adopting a unique life history strategy that suited it to the underground environment. In light of our new data, an alternative scenario for its colonisation of the karst is proposed. The extant Congeria comprises three sister species that, to date, have only been found to live in 15 caves in the Dinaric karst. Inter-specific morphological stasis and intra-specific ecophenotypic plasticity of the congerid shell demonstrate the contrasting ways in which evolution in the underground environments shapes its inhabitants. PMID:23388548

  11. Life history and propagation of the endangered fanshell pearlymussel, Cyprogenia stegaria Rafinesque (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Jones, J.W.; Neves, R.J.

    2002-01-01

    Aspects of the reproduction, age, growth, fish hosts, and culture of juveniles were determined for the endangered fanshell pearlymussel, Cyprogenia stegaria Rafinesque, 1820, in the Clinch River, Tennessee. Glochidia of C. stegaria are contained in red, worm-like conglutinates that resemble oligochaetes. Conglutinates are 20 to 80 mm long and are released through the excurrent aperture. Estimated fecundity was 22,357 to 63,459 glochidia/mussel. Eighty-four valves of C. stegaria were thin-sectioned for aging; ages ranged from 6 to 26 y. Of 16 fish species tested, 9 hosts were identified through induced infestations of glochidia: mottled sculpin (Cottus bairdi), banded sculpin (Cottus carolinae), greenside darter (Etheostoma blennioides), snubnose darter (Etheostoma simoterurn), banded darter (Etheostoma zonale), tangerine darter (Percina aurantiaca), blotchside logperch (Percina burtoni), logperch (Percina caprodes), and Roanoke darter (Percina roanoka). Newly metamorphosed juveniles were cultured in recirculating and nonrecirculating aquaculture systems within dishes containing sediments of 300 to 500 ??m diameter (sand) or <105 ??m diameter (silt), and fed either the green algae Neochloris oleoabundans or Scenedesrnus quadricauda daily. Growth and survival of juvenile mussels were highest in the nonrecirculating aquaculture system, with a mean survival of 72% after 2 wk and 38% after 4 wk.

  12. Life history and propagation of the endangered dromedary pearlymussel (Dromus dromas) (Bivalvia:Unionidae)

    USGS Publications Warehouse

    Jones, J.W.; Neves, R.J.; Ahlstedt, S.A.; Mair, R.A.

    2004-01-01

    The reproduction, demography, and propagation of the endangered dromedary pearlymussel (Dromus dromas) (Lea, 1834) were studied in the Clinch and Powell rivers, Tennessee. Viable populations of the dromedary pearlymussel now occur only in the Clinch and Powell rivers; the species has been extirpated from the remaining portions of its range in the Cumberland and Tennessee river drainages. Females are long-term winter brooders, and they are gravid from October to June. Glochidia are contained in conglutinates that are red to white and resemble freshwater leeches or flatworms. Conglutinates are 20 to 40 mm long and are released through the excurrent aperture. Estimates of fecundity based on 7 gravid females collected from the Clinch River were 55,110 to 253,050 glochidia/mussel. The ages of 66 valves of D. dromas were determined by thin-sectioning and ranged from 3 to 25 y. Annual growth averaged 5 mm/y until age 10 and decreased to ???1.2 mm/ y thereafter. Nineteen fish species were tested for suitability as hosts for glochidia. Ten were confirmed as hosts through induced infestations of glochidia: black sculpin (Cottus baileyi), greenside darter (Etheostoma blennioides), fantail darter (Etheostoma flabellare), snubnose darter (Etheostoma simoterum), tangerine darter (Percina aurantiaca), blotchside logperch (Percina burtoni), logperch (Percina caprodes), channel darter (Percina copelandi), gilt darter (Percina evides), and Roanoke darter (Percina roanoka). Juveniles produced from these hosts were cultured in dishes held in nonrecirculating aquaculture systems containing fine sediment (<105 ??m) and were fed the green alga Nannochloropsis oculata every 2 d. Survival of 2810 newly metamorphosed juveniles was 836 (29.7%) after 1 to 2 wk.

  13. Molecular Cytogenetics in Trough Shells (Mactridae, Bivalvia): Divergent GC-Rich Heterochromatin Content

    PubMed Central

    García-Souto, Daniel; Pérez-García, Concepción; Kendall, Jack; Pasantes, Juan J.

    2016-01-01

    The family Mactridae is composed of a diverse group of marine organisms, commonly known as trough shells or surf clams, which illustrate a global distribution. Although this family includes some of the most fished and cultured bivalve species, their chromosomes are poorly studied. In this work, we analyzed the chromosomes of Spisula solida, Spisula subtruncata and Mactra stultorum by means of fluorochrome staining, C-banding and fluorescent in situ hybridization using 28S ribosomal DNA (rDNA), 5S rDNA, H3 histone gene and telomeric probes. All three trough shells presented 2n = 38 chromosomes but different karyotype compositions. As happens in most bivalves, GC-rich regions were limited to the nucleolus organizing regions in Spisula solida. In contrast, many GC-rich heterochromatic bands were detected in both Spisula subtruncata and Mactra stultorum. Although the three trough shells presented single 5S rDNA and H3 histone gene clusters, their chromosomal locations differed. Regarding major rDNA clusters, while Spisula subtruncata presented a single cluster, both Spisula solida and Mactra stultorum showed two. No evidence of intercalary telomeric signals was detected in these species. The molecular cytogenetic characterization of these taxa will contribute to understanding the role played by chromosome changes in the evolution of trough shells. PMID:27537915

  14. External morphology of spermatozoa and spermatozeugmata of the freshwater mussel Truncilla truncata (Mollusca: Bivalvia: Unionidae)

    USGS Publications Warehouse

    Waller, D.L.; Lasee, B.A.

    1997-01-01

    Truncilla truncata males release spherical aggregates of spermatozoa, called spermatozeugmata, at spawning. Sperm aggregates from other bivalve species have been described, but few detailed studies exist of the morphology of unionid spermatozeugmata and spermatozoa. We provide the first description of the external morphology of spermatozeugmata and spermatozoa of T. Truncata. The spermatozeugmata had an inside diameter of 76 mu m and contained 8000-9000 spermatozoa. Heads of spermatozoa were directed toward the center of the sphere into a translucent shell; tails were arranged radially and caused the spermatozeugmata to rotate. Spermatozoa of T. Truncata measured 3.3 mu m in length (excluding tail) and each had a head, a midpiece and a flagellum. We also documented the release of spermatozeugmata in two additional unionid species, Lampsilis cardium and Amblema plicata plicata.

  15. Phylogeny and evolution of ontogeny of the family Oxytomidae Ichikawa, 1958 (Mollusca: Bivalvia)

    NASA Astrophysics Data System (ADS)

    Lutikov, O. A.; Temkin, I. E.; Shurygin, B. N.

    2010-08-01

    We described ontogenies and reconstructed morphogeneses of hinges in some supraspecific taxa of the bivalve family Oxytomidae Ichikawa, 1958 from the Mesozoic of Russia. The phylogeny of the family is reconstructed using evolutionary and cladistic methods. The appearance of the endemic genus Arctotis Bodylevsky, 1960 in the epicontinental seas of Siberia can be explained in terms of gradual transformations of the ligament and byssal apparatus in the Northern Siberian members of Praemeleagrinella Lutikov et Shurygin, 2009 and Praearctotis Lutikov et Shurygin, 2009.

  16. Trends in the sand: Directional evolution in the shell shape of recessing scallops (Bivalvia: Pectinidae).

    PubMed

    Sherratt, Emma; Alejandrino, Alvin; Kraemer, Andrew C; Serb, Jeanne M; Adams, Dean C

    2016-09-01

    Directional evolution is one of the most compelling evolutionary patterns observed in macroevolution. Yet, despite its importance, detecting such trends in multivariate data remains a challenge. In this study, we evaluate multivariate evolution of shell shape in 93 bivalved scallop species, combining geometric morphometrics and phylogenetic comparative methods. Phylomorphospace visualization described the history of morphological diversification in the group; revealing that taxa with a recessing life habit were the most distinctive in shell shape, and appeared to display a directional trend. To evaluate this hypothesis empirically, we extended existing methods by characterizing the mean directional evolution in phylomorphospace for recessing scallops. We then compared this pattern to what was expected under several alternative evolutionary scenarios using phylogenetic simulations. The observed pattern did not fall within the distribution obtained under multivariate Brownian motion, enabling us to reject this evolutionary scenario. By contrast, the observed pattern was more similar to, and fell within, the distribution obtained from simulations using Brownian motion combined with a directional trend. Thus, the observed data are consistent with a pattern of directional evolution for this lineage of recessing scallops. We discuss this putative directional evolutionary trend in terms of its potential adaptive role in exploiting novel habitats. PMID:27375214

  17. Temporal dynamics of amino and fatty acid composition in the razor clam Ensis siliqua (Mollusca: Bivalvia)

    NASA Astrophysics Data System (ADS)

    Baptista, Miguel; Repolho, Tiago; Maulvault, Ana Luísa; Lopes, Vanessa M.; Narciso, Luis; Marques, António; Bandarra, Narcisa; Rosa, Rui

    2014-12-01

    Few studies have been conducted on the temporal dynamics of both amino acid (AA) and fatty acid (FA) profiles in marine bivalves. We investigated the seasonal variation of these compounds in the pod razor clam Ensis siliqua in relation to food availability, salinity, water temperature and reproductive cycle. AA content varied between 46.94 and 54.67 % dry weight (DW), and the AAs found in greater quantity were glutamic acid, glycine and aspartic acid. FA content varied between 34.02 and 87.94 mg g-1 DW and the FAs found in greater quantity were 16:0 and 22:6 n-3. Seasonal trends were observed for AAs and FAs. FAs increased with gametogenesis and decreased with spawning while AA content increased throughout spawning. The effect of increasing temperature and high food availability during the spawning season masked the loss of AAs resulting from gamete release. Still, a comparatively greater increase in the contents of glutamic acid and leucine with spawning indicate their possible involvement in a post-spawning gonad recovery mechanism. A post-spawning decrease in 14:0, 16:0, 16:1 n-7, 18:1 n-7 and 18:1 n-9 is indicative of the importance of these FAs in bivalve eggs. An increase in 18:3 n-3, 18:4 n-3, 20:1 n-9 and 20:2 n-6 during gametogenesis suggests their involvement in oocyte maturation. The FA 22:4 n-6, while increasing with spawning, appears to play a role in post-spawning gonad recovery. Salinity did not have an effect on the AA composition. None of the environmental parameters measured had an effect on FA composition.

  18. Submarine canyons as the preferred habitat for wood-boring species of Xylophaga (Mollusca, Bivalvia)

    NASA Astrophysics Data System (ADS)

    Romano, C.; Voight, J. R.; Company, J. B.; Plyuscheva, M.; Martin, D.

    2013-11-01

    Submarine canyons are often viewed as natural “debris concentrators” on the seafloor. Organic substrates may be more abundant inside than outside canyon walls. To determine the effects of the presence these substrates in the Blanes submarine canyon (NW Mediterranean) and its adjacent western open slope, we deployed wood to study colonizing organisms. Three replicate pine and oak cubes (i.e. most common trees inland) were moored at 900, 1200, 1500 and 1800 m depth and collected after 3, 9 and 12 months. Wood from inside the canyon was significantly more heavily colonized by the five morphotypes of wood-boring bivalves than was wood on the adjacent open slope. Xylophaga sp. A dominated all wood types and locations, with peak abundance at 900 and 1200 m depth. Its growth rate was highest (0.070 mm d-1) during the first three months and was faster (or it recruits earlier) in pine than in oak. Size distribution showed that several recruitment events may have occurred from summer to winter. Xylophaga sp. B, appeared first after 9 months and clearly preferred pine over oak. As the immersion time was the same, this strongly supported a specific association between recruiters and type of substrate. Three morphotypes, pooled as Xylophaga spp. C, were rare and seemed to colonize preferentially oak inside the canyon and pine in the adjacent open slope. Individuals of Xylophaga were more abundant inside the canyon than in nearby off-canyon locations. Blanes Canyon may serve as a long-term concentrator of land-derived vegetal fragments and as a consequence sustain more animals. Are the species richness and abundance of wood-boring bivalves higher inside the canyon than on the adjacent open slope? Do the composition and density of the wood-boring bivalves change with deployment time and depth, as well as on the type of the sunken wood? What is the growth rate of the dominant wood-boring species?

  19. Size-differential feeding in Pinna nobilis L. (Mollusca: Bivalvia): Exploitation of detritus, phytoplankton and zooplankton

    NASA Astrophysics Data System (ADS)

    Davenport, John; Ezgeta-Balić, Daria; Peharda, Melita; Skejić, Sanda; Ninčević-Gladan, Živana; Matijević, Slavica

    2011-04-01

    The endangered fan shell Pinna nobilis is a large bivalve mollusc (<120 cm shell length) endemic to the Mediterranean that lives one-third buried in soft substrata, generally in shallow coastal waters. We hypothesised that P. nobilis of different sizes would ingest different food sources, because small fan shells will inhale material from closer to the substratum than do large fan shells. We studied stomach contents and faeces of 18 fan shells, 6 small (mean 23.0 cm length), 6 medium-sized (mean 41.5 cm length) and 6 large (mean 62.7 cm length) living in a small area of a low-energy coastal detritic bottom characterised by mud, sand and macroalgae at Mali Ston Bay, Croatia. We found that all P. nobilis ingested copious quantities of undetermined detritus (probably at least 95% of ingested material), phytoplankton, micro and mesozooplankton and pollen grains. Large P. nobilis stomach contents showed a preponderance of water column calanoid copepods, while small fan shells had higher numbers of bivalve larvae. All fan shells took in high numbers of harpacticoid copepods that are benthonic, feeding on microbial communities of detritus and benthic vegetation. There was also a significant selection of phytoplankton species, some apparently occurring between inhalation and ingestion. The stomach contents of small P. nobilis had a higher organic matter content than either medium-sized or large fan shells; this indicated that small fan shells ingested detritus of higher organic content than did larger P. nobilis. As the faeces of all P. nobilis had similar organic matter content, this also indicates higher assimilation efficiencies in small fan shells. The demonstration of differential dietary selectivity by different sized animals has implications for future trophic studies of this endangered species. This study also provides the first demonstration of predation on zooplankton by P. nobilis.

  20. Multi-species generalist predation on the stochastic harvested clam Tivela mactroides (Mollusca, Bivalvia)

    NASA Astrophysics Data System (ADS)

    Turra, Alexander; Fernandez, Wellington S.; Bessa, Eduardo; Santos, Flavia B.; Denadai, Márcia R.

    2015-12-01

    Top-down control is an important force modulating the abundance of prey and structuring marine communities. The harvested trigonal clam Tivela mactroides is hypothesized to be part of the diet of a variety of marine organisms, with its stock influencing predator abundance and being influenced by them. Here we analyzed the diet of potential predators of T. mactroides in Caraguatatuba Bay, northern coast of São Paulo State, Brazil, to identify the main consumers of this marine resource, and also to address the importance of this clam in the diet of each predator. Samples were taken year-round by trawls; all specimens collected were identified and measured and the food items identified and quantified. Twenty-one species consumed T. mactroides, whose importance in the diet varied greatly in both the volume ingested and the frequency of occurrence (pompano Trachinotus carolinus > blue crab Callinectes danae > starfish Astropecten marginatus). Top-down influence on T. mactroides was also dependent on the abundance of consumers (yellow catfish Cathorops spixii > rake stardrum Stellifer rastrifer > barred grunt Conodon nobilis > A. marginatus). Considering the mean volume ingested, the frequency of occurrence of T. mactroides in the diet, and the relative abundance of consumers, the predators that most influenced T. mactroides were T. carolinus, A. marginatus, and C. danae, in decreasing order. Large numbers of small-sized individuals of T. mactroides (<10 mm) were generally preyed upon by A. marginatus, which may have a stronger effect on clam abundance in comparison to C. danae and T. carolinus, which preyed upon larger clams. In conclusion, the results of this study indicate that predators' consumption of T. mactroides in Caraguatatuba Bay can influence its stocks, mainly due to the type and/or abundance of predator species, the volume and number of individuals of T. mactroides preyed upon, and the temporal variations in the abundance of predators.

  1. Cytogenetics of Anodonta cygnea (Mollusca: Bivalvia) as possible indicator of environmental adversity

    NASA Astrophysics Data System (ADS)

    Carrilho, J.; Leitão, A.; Vicente, C.; Malheiro, I.

    2008-11-01

    Anodonta cygnea is a freshwater clam, belonging to the Unionidae family, which can be found in rivers and lagoons all over Europe and Northern America. As they appear as important case studies for ecological damage assessments, the various species of the Unionidae family have been submitted to a sort of recent studies on their chromosomal or cytogenetic status. In this study we confirmed the diploid chromosome number of 2 n = 38 for this species, and established for the first time the karyotype, which comprised six metacentric, 12 submetacentric and one subtelocentric chromosome pairs. We also found a high percentage of cells with an abnormal number of chromosomes. Considering that karyotype disturbances in Unionids have been previously related with exposure to chemicals, either natural or produced by human activity, we determined the aneuploidy index for our population. The aneuploidy index is an excellent marker for pollutant presence/effect. The animals acclimatized in tap water and in natural water from the lake where the individuals were collected showed different levels of aneuploidy. The higher values were found in tap water. Chromosome analysis techniques seem a suitable tool to study the impact of contaminants referred above, and making A. cygnea a suitable organism for assessment of an eugenic damage in aquatic systems. On the other hand, our results also point out to the importance of doing the acclimatizing process of the collected animals in their own natural water.

  2. Epibiotic relationships on Zygochlamys patagonica (Mollusca, Bivalvia, Pectinidae) increase biodiversity in a submarine canyon in Argentina

    NASA Astrophysics Data System (ADS)

    Schejter, Laura; López Gappa, Juan; Bremec, Claudia Silvia

    2014-06-01

    The continental slope of the southern SW Atlantic Ocean has many distinguishable deep submarine canyons, varying in depth and extension. The benthic fauna within one of them, detected in April 2005 by means of a multibeam SIMRAD EM1002 sonar, and located at 43°35‧S to 59°33‧W, 325 m depth, was studied to discuss faunal affinities with the neighbouring Patagonian scallop fishing grounds located at upper slope depths. In order to add faunal information to the previous general study, we studied the epibiotic species settled on Patagonian scallops (the dominant species in the area) collected in the reference sampling site using a 2.5-m mouth-opening dredge, 10 mm mesh size. We sampled 103 scallops with shell heights between 22 and 69 mm; epibionts were recorded on both valves. We found 53 epibiotic taxa, which were most conspicuous on the upper valve. Bryozoa was the most diverse group (34 species) while Polychaeta was the most abundant group, recorded on 94% of the scallops. Stylasteridae (2 species) and Clavulariidae (Cnidaria) conform newly recorded epibionts on Z. patagonica and the sponge Tedania (Tedaniopsis) infundibuliformis also represents a new record for the SW Atlantic Ocean.

  3. Body condition and gametogenic cycle of Galatea paradoxa (Mollusca: Bivalvia) in the Volta River estuary, Ghana

    NASA Astrophysics Data System (ADS)

    Adjei-Boateng, D.; Wilson, J. G.

    2013-11-01

    The reproductive cycle of Galatea paradoxa which is the basis for an artisanal fishery in the Volta River estuary, Ghana, was studied using condition indices and histological methods from March 2008 to July 2009. The cycle is annual with a single spawning event between June and October. Gametogenesis starts in November progressing steadily to a peak in June-July when spawning begins until October when the animal is spent. The condition indices (shell-free wet weight/total wet weight, ash-free dry weight/shell weight and gonad wet weight/shell weight) showed a clear relationship with the gametogenic stage rising from a minimum at stage (I) start of gametogenesis, to their highest values at stages (IIIA) ripe and (IIIB) start of spawning before declining significantly to stage (IV) spent.It is suggested that condition index may prove a valuable technique in fishery management to recognise the reproductive stages of G. paradoxa as it is less expensive and time consuming than histological techniques in addition to being easier to teach to non-specialists. The data presented in this study provide information on the timing of spawning events for G. paradoxa, which is necessary for developing sustainable management strategies and selection of broodstock for aquaculture.

  4. Spawning, fertilization, and larval development of Potamocorbula amurensis (Mollusca: Bivalvia) from San Francisco Bay, California

    USGS Publications Warehouse

    Nicolini, M.H.; Penry, D.L.

    2000-01-01

    In Potamocorbula amurensis time for development to the straight-hinge larval stage is 48 hr at 15??C. Potamocorbula amurensis settles at a shell length of approximately 135 ??m 17 to 19 days after fertilization. Our observations of timing of larval devdlopment in P. amurensis support the hypothesis of earlier workers that its route of initial introduction to San Francisco Bay was as veliger larvae transported in ballast water by trans-Pacific cargo ships. The length of the larval period of P. amurensis relative to water mass residence times in San Francisco Bay suggests that it is sufficient to allow substantial dispersal from North Bay to South Bay populations in concordance with previous observations that genetic differentiation among populations of P. amurensis in San Francisco Bay is low. Potamocorbula amurensis is markedly euryhaline at all stages of development. Spawning and fertilization can occur at salinities from 5 to 25 psu, and eggs and sperms can each tolerance at least a 10-psu step increase or decrease in salinity. Embryos that are 2 hr old can tolerate the same range of salinities from (10 to 30 psu), and by the time they are 24 hr old they can tolerate the same range of salinities (2 to 30 psu) that adult clams can. The ability of P. amurensis larvae to tolerate substantial step changes in salinity suggests a strong potential to survive incomplete oceanic exchanges of ballast water and subsequent discharge into receiving waters across a broad range of salinities.

  5. [Mollusc diversity in an Arca zebra (Mollusca: Bivalvia) community, Chacopata, Sucre, Venezuela].

    PubMed

    Prieto, A S; Ruiz, L J; García, N; Alvarez, M

    2001-06-01

    The diversity of a subtidal epifaunal mollusk community was studied from September, 1990 to September, 1991 in Chacopata, Sucre State, Venezuela. There were 40 species (24 bivalves and 16 gastropods). The diversity indexes (H' = 2.087, J' = 0.392, 1/D = 0.528) were low when compared with other tropical zones. Monthly diversity reached its maximum in September, 1990 (1.63 bits/ind.) and July, 1991 (1.60 bits/ind.); minimum diversity occurred in June, 1991 (0.52 bits/ind.). A Log series model applied to species abundance data showed a straight line with a diversity index alpha of 5.56. Of 40 species identified, the turkeywing Arca zebra was dominant (69% in number of individuals and 72% of biomass) followed by Pinctada imbricata, Modiolus squamosus, Chama macerophyla and Anadara notabilis. The predatory snails Phyllonotus pomum, Chicoreus brevifrons and Murex recurvirostris seemed to have trophic relationships with A. zebra. The total mean biomass in wet weight (469.20 +/- 263 g m-2, shell included) was high which indicates that A. zebra, a species with a rapid growth rate, occupies a central role in the assemblage as an efficient filter feeder that converts planktonic food into available biomass, supporting one of the most important fisheries in Venezuela. PMID:11935909

  6. [Population dynamic of Donax denticulatus (Bivalvia: Donacidae) at Carenero Beach, Southeastern Cuba].

    PubMed

    Ocaña, Frank A; Apín, Yanet C; Cala, Yuself R

    2013-12-01

    Bivalve molluscs of Donax genus are a very important component of macro-invertebrate assemblages of sandy beaches, and some species are of commercial value in different countries. Although in Cuba Donax denticulatus is not a currently exploited species, the information concerning a stock assessment is a basic step for future use of this resource. With the aim to generate new data on this species structure, growth and secondary production, monthly samples of D. denticulatus were taken from a beach of the Southeastern coast of Cuba, from February to December 2008. Samples were taken from four stations located along the beach; three strata were marked (P1, P2 and P3) per station across the intertidal zone. Three replicated samples of sediments were taken from each stratum with a 0.025 m2 PVC core and were posteriorly sieved with a 1 mm mesh. Histograms of shell length were constructed based on 1 mm intervals and growth parameters were estimated using ELEFAN I routine of FISAT. Mean density ranged from 146.67-855.55 ind./m2 and no differences were found among months (ANOVA, p > 0.05) but among strata (Scheffé, p < 0.05). An association of recruits, young and adults abundances with the strata (chi2, p < 0.01) was found. Most of the recruits were found in the upper strata while young and adult individuals were abundant in the mid-lower strata. Size frequency histograms of this population showed recruitment between March-June. Growth parameters estimated by Von Bertalanffy were Linfinity = 27.5 mm and K = 1.5/year; and the life spam was estimated in 1.5 years. Using the length-converted catch curve, the mortality rate (Z) was estimated in 4.97/year. Based in terms of Ash free dry mass (AFDM), mean biomass was estimated in 0.47 g/m2.year and the somatic production in 12.4 g/m2.year. The renewal rate (P/B) estimated for this population was 26.38, the highest among other Donax populations. High densities, fast growth and high somatic production indicate that this population can be exploited for fishing purposes for which some management measures are proposed. PMID:24432524

  7. Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae)

    PubMed Central

    2011-01-01

    Background We employed a phylogenetic framework to identify patterns of life habit evolution in the marine bivalve family Pectinidae. Specifically, we examined the number of independent origins of each life habit and distinguished between convergent and parallel trajectories of life habit evolution using ancestral state estimation. We also investigated whether ancestral character states influence the frequency or type of evolutionary trajectories. Results We determined that temporary attachment to substrata by byssal threads is the most likely ancestral condition for the Pectinidae, with subsequent transitions to the five remaining habit types. Nearly all transitions between life habit classes were repeated in our phylogeny and the majority of these transitions were the result of parallel evolution from byssate ancestors. Convergent evolution also occurred within the Pectinidae and produced two additional gliding clades and two recessing lineages. Furthermore, our analysis indicates that byssal attaching gave rise to significantly more of the transitions than any other life habit and that the cementing and nestling classes are only represented as evolutionary outcomes in our phylogeny, never as progenitor states. Conclusions Collectively, our results illustrate that both convergence and parallelism generated repeated life habit states in the scallops. Bias in the types of habit transitions observed may indicate constraints due to physical or ontogenetic limitations of particular phenotypes. PMID:21672233

  8. Byssogenesis in the juvenile pink heelsplitter mussel, Potamilus alatus (Bivalvia: Unionidae).

    PubMed

    Wen, Hai B; Hua, Dan; Ma, Xue Y; Jin, Wu; Zhuang, Yan B; Gu, Ruo B; Yuan, Xin H; Du, Xin W; Xu, Pao

    2015-11-01

    The North American pink heelsplitter (Potamilus alatus) differs from most freshwater mussels in China by the ability to secrete an ephemeral byssus during its juvenile stage. In the present study, light microscopy, scanning electron microscopy (SEM), and transmission electron microscopy (TEM) were used to investigate this ephemeral byssal structure, and amino acid composition was analyzed and compared with that of other species. The results revealed that the byssus consists of a long byssal thread and a few adhesive plaques which are randomly set up along the thread and assembled by petioles. There is a thin but distinctive cuticle with a continuous homogeneous matrix surrounding the byssal thread. Structural variation occurred when the byssal thread was differentially stretched. Four-stranded helical primary fasciculi, which form a stable rope-like structure, become evident after removal of the cuticle. The primary fasciculi consist of bundles of hundreds of parallel secondary fasciculi, each measuring about 5 μm in diameter. All evidence indicates that the byssus of the pink heelsplitter has a significantly different macrostructure and microstructure than the permanent byssus of the marine mussel Mytilus. Byssogenesis ceases when juveniles exceed 30 mm in length, although it varies greatly even among juveniles of similar size. Byssus formation is influenced by substrate type. The unique characteristics of the byssus have important advantages for survival, transition, and aggregation during the early life history. This study not only provides first insight into the structure of the ephemeral byssus and its relationship to freshwater mussel development and growth, but also suggests possibilities for the synthesis of novel biopolymer materials particularly useful in freshwater ecosystems. PMID:26312454

  9. Long-term decline in freshwater mussels (Bivalvia: Unionidae) of the western basin of Lake Erie

    USGS Publications Warehouse

    Nalepa, Thomas F.; Manny, Bruce A.; Roth, James C.; Mozley, Samuel C.; Schloesser, Donald W.

    1991-01-01

    Long-term trends in the abundance of unionids in the western basin of Lake Erie were examined from data collected at 17 stations in 1961, 1972, and 1982. The mean number of unionids at these stations declined over this time period, decreasing from 10 m−2 in 1961, to 6 m−2 in 1972, down to 4 m−2 in 1982. This decline in abundance was reflected in the decrease in the number of stations where mussels were found; unionids were found at 16 of the 17 stations in 1961, but at only 6 stations in 1982. Reasons for the decrease in the unionid population are not generally apparent, but are probably related to the decline in water quality and periods of low oxygen levels over the time period of the surveys.

  10. The complete mitogenome of the giant clam Tridacna squamosa (Heterodonta: Bivalvia: Tridacnidae).

    PubMed

    Gan, Han Ming; Gan, Huan You; Tan, Mun Hua; Penny, Shane S; Willan, Richard C; Austin, Christopher M

    2016-09-01

    The complete mitochondrial genome of the commercially and ecologically important and internationally vulnerable giant clam Tridacna squamosa was recovered by genome skimming using the MiSeq platform. The T. squamosa mitogenome has 20,930 base pairs (62.35% A+T content) and is made up of 12 protein-coding genes, 2 ribosomal subunit genes, 24 transfer RNAs, and a 2594 bp non-coding AT-rich region. The mitogenome has a relatively large insertion in the atp6 gene. This is the first mitogenome to be sequenced from the genus Tridacna, and the family Tridacnidae and represents a new gene order. PMID:25648928

  11. The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae)a

    PubMed Central

    Thubaut, Justine; Puillandre, Nicolas; Faure, Baptiste; Cruaud, Corinne; Samadi, Sarah

    2013-01-01

    Bathymodiolinae are giant mussels that were discovered at hydrothermal vents and harboring chemosynthetic symbionts. Due to their close phylogenetic relationship with seep species and tiny mussels from organic substrates, it was hypothesized that they gradually evolved from shallow to deeper environments, and specialized in decaying organic remains, then in seeps, and finally colonized deep-sea vents. Here, we present a multigene phylogeny that reveals that most of the genera are polyphyletic and/or paraphyletic. The robustness of the phylogeny allows us to revise the genus-level classification. Organic remains are robustly supported as the ancestral habitat for Bathymodiolinae. However, rather than a single step toward colonization of vents and seeps, recurrent habitat shifts from organic substrates to vents and seeps occurred during evolution, and never the reverse. This new phylogenetic framework challenges the gradualist scenarios “from shallow to deep.” Mussels from organic remains tolerate a large range of ecological conditions and display a spectacular species diversity contrary to vent mussels, although such habitats are yet underexplored compared to vents and seeps. Overall, our data suggest that for deep-sea mussels, the high specialization to vent habitats provides ecological success in this harsh habitat but also brings the lineage to a kind of evolutionary dead end. PMID:24363902

  12. The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera

    PubMed Central

    2013-01-01

    Background Bivalve mitochondrial genomes exhibit a wide array of uncommon features, like extensive gene rearrangements, large sizes, and unusual ways of inheritance. Species pertaining to the order Solemyida (subclass Opponobranchia) show many peculiar evolutionary adaptations, f.i. extensive symbiosis with chemoautotrophic bacteria. Despite Opponobranchia are central in bivalve phylogeny, being considered the sister group of all Autobranchia, a complete mitochondrial genome has not been sequenced yet. Results In this paper, we characterized the complete mitochondrial genome of the Atlantic awning clam Solemya velum: A-T content, gene arrangement and other features are more similar to putative ancestral mollusks than to other bivalves. Two supranumerary open reading frames are present in a large, otherwise unassigned, region, while the origin of replication could be located in a region upstream to the cox3 gene. Conclusions We show that S. velum mitogenome retains most of the ancestral conchiferan features, which is unusual among bivalve mollusks, and we discuss main peculiarities of this first example of an organellar genome coming from the subclass Opponobranchia. Mitochondrial genomes of Solemya (for bivalves) and Haliotis (for gastropods) seem to retain the original condition of mollusks, as most probably exemplified by Katharina. PMID:23777315

  13. Factorial microarray analysis of zebra mussel (Dreissena polymorpha: Dreissenidae, Bivalvia) adhesion

    PubMed Central

    2010-01-01

    Background The zebra mussel (Dreissena polymorpha) has been well known for its expertise in attaching to substances under the water. Studies in past decades on this underwater adhesion focused on the adhesive protein isolated from the byssogenesis apparatus of the zebra mussel. However, the mechanism of the initiation, maintenance, and determination of the attachment process remains largely unknown. Results In this study, we used a zebra mussel cDNA microarray previously developed in our lab and a factorial analysis to identify the genes that were involved in response to the changes of four factors: temperature (Factor A), current velocity (Factor B), dissolved oxygen (Factor C), and byssogenesis status (Factor D). Twenty probes in the microarray were found to be modified by one of the factors. The transcription products of four selected genes, DPFP-BG20_A01, EGP-BG97/192_B06, EGP-BG13_G05, and NH-BG17_C09 were unique to the zebra mussel foot based on the results of quantitative reverse transcription PCR (qRT-PCR). The expression profiles of these four genes under the attachment and non-attachment were also confirmed by qRT-PCR and the result is accordant to that from microarray assay. The in situ hybridization with the RNA probes of two identified genes DPFP-BG20_A01 and EGP-BG97/192_B06 indicated that both of them were expressed by a type of exocrine gland cell located in the middle part of the zebra mussel foot. Conclusions The results of this study suggested that the changes of D. polymorpha byssogenesis status and the environmental factors can dramatically affect the expression profiles of the genes unique to the foot. It turns out that the factorial design and analysis of the microarray experiment is a reliable method to identify the influence of multiple factors on the expression profiles of the probesets in the microarray; therein it provides a powerful tool to reveal the mechanism of zebra mussel underwater attachment. PMID:20509938

  14. Habitat Preferences and Growth of Ruditapes bruguieri (Bivalvia: Veneridae) at the Northern Boundary of Its Range

    PubMed Central

    2014-01-01

    This work is the first attempt to study growth and some morphological parameters of the clam Ruditapes bruguieri, as well as its habitat preferences. It is found that R. bruguieri lives on bottom sediments including pebble and coarse- and medium-grained sand with a slight admixture of silt. At the study area, this bivalve inhabits sea waters with good aeration, stable oceanic water salinity, and a high oxygen concentration. The annual fluctuations of the water temperature from 13-14°C (in winter) to 22–29°C (in summer) are close to the threshold temperature values, within which the species can exist. Near the boundary of the species range, along the Jeju Island coasts, south of Republic of Korea, 83.8% of all clams die during the coldest period of the year. Here, annual rings are formed on R. bruguieri shells during winter. The maximum age of R. bruguieri, determined during the study, is 6.5 years, but the clam samples contain mainly individuals at 3.0–3.5 years of age (34%). The largest clam dimensions are 36.0 × 26.5 mm (length × height of shell). At the study area, a usual shell length is 20.0–32.0 mm (75% of all the collected individuals). PMID:24526886

  15. BIOMARKER RESPONSES IN MACOMA NASUTA (BIVALVIA) EXPOSED TO SEDIMENTS FROM NORTHERN SAN FRANCISCO BAY. (R826940)

    EPA Science Inventory

    Abstract

    Our study investigates biomarker responses and survival of Macoma nasuta exposed to sediments collected from six locations in northern San Francisco Bay. Biomarkers analyzed were stress proteins (hsp70) in gill, mantle and digestive gland, lysosomal mem...

  16. Growth and production of Donax striatus (Bivalvia: Donacidae) from Las Balsas beach, Gibara, Cuba.

    PubMed

    Ocaña, Frank A

    2015-09-01

    Clams of the genus Donax are worldwide the dominating group of the invertebrate community on sandy beaches. They are primary consumers that provide a significant abundance and biomass to the ecosystem. In the Caribbean, Donax striatus has an important role for nature and human, nonetheless studies on the population dynamics of this beach clam are scarce and no information exists on secondary production of this species. Growth parameters and secondary production of D. striatus were estimated from February 2008 to November 2009 at Las Balsas beach, Northeastern Cuba, in order to provide basic information for management purposes. In each month 45 samples were taken by means of a PVC corer of 0.025 m2 area and sieved with a 1 mm mesh. Animals were measured and weighted with and without shell. A total of 5 471 specimens were collected during the sampling period. Shell length ranged from 2.7-33.3 mm. Growth parameters estimated from length frequency data were L∞ = 36.1 mm, K= 0.8/yr and t0= 0.2/yr. The growth performance resulted in values of Φ'= 3.02. Life span was 2.4 yrs and mortality rate was 3.07 /yr. In 2008, mean abundance of D. striatus ranged between 17.1 - 770.7 ind./m2. In 2009 the lowest mean abundance was 34.4 and the highest was 892.5 ind./m2. During 2009 biomass and production was more than twice higher in comparison with 2008. Individual production showed highest values in the 24 mm shell size (3.74 g/m2.yr) and 25 mm (0.71 g/m2.yr), considering mass with shell and without shell, respectively. During 2009 abundance of individuals with 15 mm shell length or more increased resulting in higher biomass and production, compared to 2008. Using the conversion factor of wet mass to ash free dry mass (AFDM), annual production ranged between 2.87-6.11 g AFDM/m2.yr, resulting in a turnover rate (P/B) between 5.11 and 3.47 in 2008 and 2009, respectively. The rapid growth and high turnover rate of D. striatus suggest a rapid recovery of the population. These results support the idea that this beach clam is an important resource at Las Balsas beach. Thus its exploitation must continue with caution, and only at the level of a recreational fishery. PMID:26666121

  17. Population dynamics of Megapitaria squalida (Bivalvia: Veneridae) at Magdalena Bay, Baja California Sur, Mexico.

    PubMed

    Schweers, Tanja; Wolff, Matthias; Koch, Volker; Duarte, Francisco Sinsel

    2006-09-01

    The population dynamics of an intertidal population of Megapitaria squalida was studied from September 2002 to February 2003 in Bahia Magdalena, Mexico. To obtain information about the artisanal and recreational fishery of M. squalida, local fishermen at different parts of the bay were interviewed. Clam densities were determined at one unexploited and two exploited sites along perpendicular transects from the shore line. Average clam density was 2.01+/-1.41 ind/m2, densities did not differ significantly between the three sampling sites. The length-total mass relation was Mtot = 0.0001*SL3.1644 (r2 = 0.9804, n = 92) and the length-tissue mass relation was Mtis = 0.0002*SL2.7144 (r2 = 0.945, n = 92). Von Bertalanffy-growth parameters were determined using marked individuals. Strong interindividual and also seasonal differences in growth were observed. Average annual values were: K = 0.655, Linfinity = 83 mm. Since M. squalida can reach a shell length of more than 135 mm in deeper waters, it is necessary to consider intertidal and subtidal populations separately. Average total mortality (Z) was 1.61 y(-1). No fishing mortality was calculated because total mortality Z at the unexploited control site was higher than Z at the exploited sites. It appears that M. squalida migrates into deeper water with increasing shell length, as average shell length increased at lower tidal levels and marked specimens showed a clear migration towards deeper waters. As yet no overexploitation could be found in the study area. PMID:18491642

  18. Transcriptomics provides insight into Mytilus galloprovincialis (Mollusca: Bivalvia) mantle function and its role in biomineralisation.

    PubMed

    Bjärnmark, Nadège A; Yarra, T; Churcher, A M; Felix, R C; Clark, M S; Power, D M

    2016-06-01

    The mantle is an organ common to all molluscs and is at the forefront of the biomineralisation process. The present study used the Mediterranean mussel (Mytilus galloprovincialis) as a model species to investigate the structural and functional role of the mantle in shell formation. The transcriptomes of three regions of the mantle edge (umbo to posterior edge) were sequenced using Illumina technology which yielded a total of 61,674,325 reads after adapter trimming and filtering. The raw reads assembled into 179,879 transcripts with an N50 value of 1086bp. A total of 1363 transcripts (321, 223 and 816 in regions 1, 2 and 3, respectively) that differed in abundance in the three mantle regions were identified and putative function was assigned to 54% using BLAST sequence similarity searches (cut-off less than 1e(-10)). Morphological differences detected by histology of the three mantle regions was linked to functional heterogeneity by selecting the top five most abundant Pfam domains in the annotated 1363 differentially abundant transcripts across the three mantle regions. Calcium binding domains dominated region two (middle segment of the mantle edge). Candidate biomineralisation genes were mined and tested by qPCR. This revealed that Flp-like, a penicillin binding protein potentially involved in shell matrix maintenance of the Pacific oyster (Crassostrea gigas), had significantly higher expression in the posterior end of the mantle edge (region one). Our findings are intriguing as they indicate that the mantle edge appears to be a heterogeneous tissue, displaying structural and functional bias. PMID:27037218

  19. Life history and demographics of the endangered birdwing pearlymussel (Lemiox rimosus) (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Jones, J.W.; Neves, R.J.; Ahlstedt, S.A.; Hubbs, D.; Johnson, M.; Dan, H.; Ostby, B.J.K.

    2010-01-01

    The life history and population demography of the endangered birdwing pearlymussel (Lemiox rimosus) were studied in the Clinch and Duck rivers, Tennessee. Reproducing populations of L. rimosus now occur only in the Clinch, Duck and Powell rivers, as the species is considered extirpated from the remaining portions of its range in the Tennessee River drainage. Females are long-term winter brooders, typically gravid from Oct. to May. Glochidia are contained in the outer gills and are released in association with a mantle-lure that resembles a small freshwater snail. Estimated fecundity, based on 8 gravid females collected from the Clinch and Duck rivers, ranged from 4132 to 58,700 glochidia/mussel. Seven fish species were tested for suitability as hosts for glochidia, and five darter species were confirmed through induced infestations: Etheostoma blennioides, E. camurum, E. rufilineatum, E. simoterum and E. zonale. Ages of L. rimosus shells were determined by thin-sectioning and ranged from 3 to 15 y in both rivers. Shell growth was higher and maximum size greater in males than females in both rivers. Shell growth was greatest in the Duck River. Densities of L. rimosus in the Clinch River were maintained at seemingly stable but low levels ranging from 0.07 to 0.27 m-2 from 20042007, and in the Duck River at similar but higher levels ranging from 0.6 to 1.0 m -2 from 20042006. In the latter river, abundance has increased since 1988, likely due to improved minimum flows and dissolved oxygen levels in water releases from a reservoir upstream. ?? 2010, American Midland Naturalist.

  20. Influence of the invasive Asian clam Corbicula fluminea (Bivalvia: Corbiculidae) on estuarine epibenthic assemblages

    NASA Astrophysics Data System (ADS)

    Ilarri, M. I.; Souza, A. T.; Antunes, C.; Guilhermino, L.; Sousa, R.

    2014-04-01

    One of the most widespread invasive alien species (IAS) in aquatic ecosystems is the Asian clam Corbicula fluminea. Several studies have shown that C. fluminea can cause large-scale changes in macrozoobenthic assemblages; however, very few attempted to investigate the effects of this IAS on mobile epibenthic species, such as fishes and crustaceans. In this context, the influence of C. fluminea on epibenthic species was investigated during one year by comparing the associated epibenthic fauna in three nearby sites of the Minho estuary (NW of the Iberian Peninsula), wherein the abiotic conditions are similar but the density of the Asian clam is highly different. From a total of 13 species, six were significantly influenced by C. fluminea; five responded positively, namely the brown shrimp Crangon crangon, the European eel Anguilla anguilla, the common goby Pomatoschistus microps, the brown trout Salmo trutta fario and the great pipefish Syngnathus acus, whereas the shore crab Carcinus maenas was negatively influenced. However, stomach contents analysis revealed that fish and crustacean species do not feed on C. fluminea, suggesting that this IAS is still not a large component of the diet of higher trophic levels in this estuarine ecosystem. Our results suggest that the structure provided by C. fluminea shells is likely to be one of the main factors responsible for the differences observed. C. fluminea physical structure seems to influence the epibenthic associated fauna, when found in densities higher than 1000 ind./m2, with sedentary small-bodied crustaceans and fishes being mainly attracted by the increasing in habitat complexity and consequent enhancement of heterogeneity and shelter availability.

  1. Plant-Pathogen Interaction-Related MicroRNAs and Their Targets Provide Indicators of Phytoplasma Infection in Paulownia tomentosa × Paulownia fortunei.

    PubMed

    Fan, Guoqiang; Niu, Suyan; Xu, Tong; Deng, Minjie; Zhao, Zhenli; Wang, Yuanlong; Cao, Lin; Wang, Zhe

    2015-01-01

    Paulownia witches' broom (PaWB) caused by a phytoplasma, has caused extensive losses in the yields of paulownia timber and resulted in significant economic losses. However, the molecular mechanisms in Paulownia that underlie the phytoplasma stress are poorly characterized. In this study, we use an Illumina platform to sequence four small RNA libraries and four degradome sequencing libraries derived from healthy, PaWB-infected, and PaWB-infected 15 mg·L-1 and 30 mg·L-1 methyl methane sulfonate (MMS)-treated plants. In total, 125 conserved and 118 novel microRNAs (miRNAs) were identified and 33 miRNAs responsive to PaWB disease were discovered. Furthermore, 166 target genes for 18 PaWB disease-related miRNAs were obtained, and found to be involved in plant-pathogen interaction and plant hormone signal transduction metabolic pathways. Eleven miRNAs and target genes responsive to PaWB disease were examined by a quantitative real-time PCR approach. Our findings will contribute to studies on miRNAs and their targets in Paulownia, and provide new insights to further understand plant-phytoplasma interactions. PMID:26484670

  2. Complete Genome Sequence of Terribacillus aidingensis Strain MP602, a Moderately Halophilic Bacterium Isolated from Cryptomeria fortunei in Tianmu Mountain in China.

    PubMed

    Lu, Peng; Lei, Mengying; Xiao, Fenghu; Zhang, Liqin; Wang, Yongjun

    2015-01-01

    Terribacillus aidingensis strain MP602, which was isolated from an ancient tree (Cryptomeria forunei) in Tianmu Mountain in China, has antagonistic activity against several certain phytopathogenic fungi. Here, we report the genome sequence of this strain. This is the first complete genome report of the Terribacillus genus. PMID:25792050

  3. Complete Genome Sequence of Terribacillus aidingensis Strain MP602, a Moderately Halophilic Bacterium Isolated from Cryptomeria fortunei in Tianmu Mountain in China

    PubMed Central

    Lu, Peng; Lei, Mengying; Xiao, Fenghu; Zhang, Liqin

    2015-01-01

    Terribacillus aidingensis strain MP602, which was isolated from an ancient tree (Cryptomeria forunei) in Tianmu Mountain in China, has antagonistic activity against several certain phytopathogenic fungi. Here, we report the genome sequence of this strain. This is the first complete genome report of the Terribacillus genus. PMID:25792050

  4. Plant–Pathogen Interaction-Related MicroRNAs and Their Targets Provide Indicators of Phytoplasma Infection in Paulownia tomentosa × Paulownia fortunei

    PubMed Central

    Fan, Guoqiang; Niu, Suyan; Xu, Tong; Deng, Minjie; Zhao, Zhenli; Wang, Yuanlong; Cao, Lin; Wang, Zhe

    2015-01-01

    Paulownia witches’ broom (PaWB) caused by a phytoplasma, has caused extensive losses in the yields of paulownia timber and resulted in significant economic losses. However, the molecular mechanisms in Paulownia that underlie the phytoplasma stress are poorly characterized. In this study, we use an Illumina platform to sequence four small RNA libraries and four degradome sequencing libraries derived from healthy, PaWB-infected, and PaWB-infected 15 mg·L−1 and 30 mg·L−1 methyl methane sulfonate (MMS)-treated plants. In total, 125 conserved and 118 novel microRNAs (miRNAs) were identified and 33 miRNAs responsive to PaWB disease were discovered. Furthermore, 166 target genes for 18 PaWB disease-related miRNAs were obtained, and found to be involved in plant-pathogen interaction and plant hormone signal transduction metabolic pathways. Eleven miRNAs and target genes responsive to PaWB disease were examined by a quantitative real-time PCR approach. Our findings will contribute to studies on miRNAs and their targets in Paulownia, and provide new insights to further understand plant-phytoplasma interactions. PMID:26484670

  5. Distribution, biomass, recruitment and productivity of Anadara senilis (L.) (Mollusca: Bivalvia) on the banc d'Arguin, Mauritania

    NASA Astrophysics Data System (ADS)

    Wolff, W. J.; Gueye, Abou; Meijboom, A.; Piersma, Th.; Alassane Sall, Mamadou

    Data on distribution, ecology, biomass, recruitment, growth, mortality and productivity of the West African bloody cockle Anadara senilis were collected at the Banc d'Aguuin, Mauritania, in early 1985 and 1986. Ash-free dry weight appeared to be correlated best with shell height. A. senilis was abundant on the tidal flats of landlocked coastal bays, but nearly absent on the tidal flats bordering the open sea. The average biomass for the entire area of tidal flats was estimated at 5.5 g·m -2 ash-free dry weight. The A. senilis population appeared to consist mainly of 10 to 20-year-old individuals, showing a very slow growth and a production: biomass ratio of about 0.02 y -1. Recruitment appeared negligible and mortality was estimated to be about 10% per year. Oystercatchers ( Haematopus ostralegus), the gastropod Cymbium cymbium and unknown fish species were responsible for a large share of this. The distinction of annual growth marks permitted the assessment of year-class strength, which appeared to be correlated with the average discharge of the river Senegal. This may be explained by assuming that year-class strength and river discharge both are correlated with rainfall at the Banc d'Arguin.

  6. Long-term monitoring of growth in the Eastern Elliptio, Elliptio complanata (Bivalvia: Unionidae), in Rhode Island: A transplant experiment

    USGS Publications Warehouse

    Kesler, D.H.; Newton, T.J.; Green, L.

    2007-01-01

    The lengths of marked specimens of the freshwater mussel, Eastern Elliptio (Elliptio complanata [Lightfoot 1786]), were monitored annually in 3 lakes in Rhode Island, USA, from 1991 to 2005. Mussels growing in Worden Pond showed a change in mean shell length of only 4.3 mm over 14 y, whereas mussel growth in 2 nearby lakes was 3 to 8x greater than growth in Worden Pond over the same time period. L???, the length at which shell growth stops, was significantly different (p < 0.001) among lakes and ranged from 60.5 to 87.4 mm. Transplant experiments revealed that mussels moved to Worden Pond stopped growing, whereas mussels moved from Worden Pond to the 2 other lakes grew at rates similar to the rates observed for resident mussels in the 2 lakes. Standard water-quality measures did not explain the observed growth cessation and lower condition indices of mussels in Worden Pond. Our growth data are consistent with food limitation. The consistent slow growth of E. complanata in Worden Pond, without high mortality, and its ability to increase growth when placed in environments more favorable than Worden Pond, suggests both growth plasticity and longevity in these animals. ?? 2007 by The North American Benthological Society.

  7. Pseudomonas fluorescens strain CL145A - a biopesticide for the control of zebra and quagga mussels (Bivalvia: Dreissenidae).

    PubMed

    Molloy, Daniel P; Mayer, Denise A; Gaylo, Michael J; Morse, John T; Presti, Kathleen T; Sawyko, Paul M; Karatayev, Alexander Y; Burlakova, Lyubov E; Laruelle, Franck; Nishikawa, Kimi C; Griffin, Barbara H

    2013-05-01

    Zebra mussels (Dreissena polymorpha) and quagga mussels (Dreissena rostriformis bugensis) are the "poster children" of high-impact aquatic invasive species. In an effort to develop an effective and environmentally acceptable method to control their fouling of raw-water conduits, we have investigated the potential use of bacteria and their natural metabolic products as selective biological control agents. An outcome of this effort was the discovery of Pseudomonas fluorescens strain CL145A - an environmental isolate that kills these dreissenid mussels by intoxication (i.e., not infection). In the present paper, we use molecular methods to reconfirm that CL145A is a strain of the species P. fluorescens, and provide a phylogenetic analysis of the strain in relation to other Pseudomonas spp. We also provide evidence that the natural product lethal to dreissenids is associated with the cell wall of P. fluorescens CL145A, is a heat-labile secondary metabolite, and has degradable toxicity within 24 h when applied to water. CL145A appears to be an unusual strain of P. fluorescens since it was the only one among the ten strains tested to cause high mussel mortality. Pipe trials conducted under once-through conditions indicated: (1) P. fluorescens CL145A cells were efficacious against both zebra and quagga mussels, with high mortalities achieved against both species, and (2) as long as the total quantity of bacterial cells applied during the entire treatment period was the same, similar mussel mortality could be achieved in treatments lasting 1.5-12.0 h, with longer treatment durations achieving lower mortalities. The efficacy data presented herein, in combination with prior demonstration of its low risk of non-target impact, indicate that P. fluorescens CL145A cells have significant promise as an effective and environmentally safe control agent against these invasive mussels. PMID:23295683

  8. [Megapitaria squalida (Bivalvia: Veneridae) fishery landings and temperature relationship in Bahía de la Paz, México].

    PubMed

    Vázquez Hurtado, Mariana; Manzano Sarabia, Marlenne; Ortega Rubio, Alfredo

    2011-03-01

    The clam Megapitaria squalida is a fishing resource with increasing importance in Northwestern Mexico. Nevertheless, this fishery has shown important variations that could be related to environmental factors. To assess this, monthly landings of M. squalida were analyzed during 2002-2005 for Bahía de La Paz, B.C.S., and were related with monthly time series of sea surface temperature, derived from MODIS-Aqua Sensor. The results showed a positive and significant relationship between sea surface temperature and clam landings. The likely impact of anomalous conditions of sea temperature on this resource is discussed. PMID:21516643

  9. Propeamussiidae, Inoceramidae, and other Bivalvia from the Lower Cretaceous Puez Formation (Valanginian–Cenomanian; Dolomites, South Tyrol, Italy)☆

    PubMed Central

    Schneider, Simon; Crampton, James S.; Lukeneder, Alexander

    2013-01-01

    A bivalve assemblage from the Lower Cretaceous Puez Formation at the type locality, Piz de Puez (Dolomites, South Tyrol, northern Italy) is described. Given the large amount of sedimentary rock screened during the course of this study, the <50 bivalves examined here, although occurring in very low abundance, are considered to represent a reasonably comprehensive sample. The assemblage provides insight into an autochthonous, Mesozoic, deep-water bivalve community, which was dominated by glass scallops. Two species are described as new, Parvamussium pizpuezense n. sp. and the giant P. mordsdrum n. sp. Presumably, they lived as epifaunal-reclining carnivores and preyed on various meiofauna, occupying a similar ecologic niche as their modern counterparts. Scarce epifaunal, suspension-feeding Inoceramidae entered only by occasional recruitment of larvae into an environment that is inferred to have been characterised by low levels of suspended nutrients. PMID:27087719

  10. [Somatic production of two species: Crassostrea virginica and Ischadium recurvum Bivalvia in Mecoacán, Tabasco, México].

    PubMed

    George Zamora, A; Aldana Aranda, D

    2000-12-01

    The Mexican oyster fishery, 90% supported by the coastal lagoons of the Gulf of Mexico, has decreased drastically in the last six years as a result of anthropogenic pollution and improper management. The mussel Ischadium recurvum has proliferated and competes with oysters for space and probably food. Crassostrea virginica and Ischadium recurvum were studied to evaluate somatic production with biometry and physiological condition indices (PCI's) during an annual cycle. A random sample of 200 organisms was taken montly for each species. Condition indices wet flesh weigth: wet shell weight ratio (WFW/WSW), dry flesh weight: wet flesh weight ratio (DFW/WFW), dry flesh wet: dry shell weight ratio (DFW/DSW), and ash free dry weight: tissue dry weight (AFDW/TDW) were calculated. In order to stablish physiological condition and temporal variability, these indices were compared between species and months. The somatic production of mussels was higher than in oysters. This enhancement in production could be explained by: 1) Mussel uses less energy for shell production, 2) a constant recruitment of mussel almost year-round, and 3) the mesohalin lagoon was more favourable to the mussel. PMID:15266794

  11. Evolutionary Dynamics of rDNA Clusters in Chromosomes of Five Clam Species Belonging to the Family Veneridae (Mollusca, Bivalvia)

    PubMed Central

    Pérez-García, Concepción; Hurtado, Ninoska S.; Morán, Paloma; Pasantes, Juan J.

    2014-01-01

    The chromosomal changes accompanying bivalve evolution are an area about which few reports have been published. To improve our understanding on chromosome evolution in Veneridae, ribosomal RNA gene clusters were mapped by fluorescent in situ hybridization (FISH) to chromosomes of five species of venerid clams (Venerupis corrugata, Ruditapes philippinarum, Ruditapes decussatus, Dosinia exoleta, and Venus verrucosa). The results were anchored to the most comprehensive molecular phylogenetic tree currently available for Veneridae. While a single major rDNA cluster was found in each of the five species, the number of 5S rDNA clusters showed high interspecies variation. Major rDNA was either subterminal to the short arms or intercalary to the long arms of metacentric or submetacentric chromosomes, whereas minor rDNA signals showed higher variability. Major and minor rDNAs map to different chromosome pairs in all species, but in R. decussatus one of the minor rDNA gene clusters and the major rDNA cluster were located in the same position on a single chromosome pair. This interspersion of both sequences was confirmed by fiber FISH. Telomeric signals appeared at both ends of every chromosome in all species. FISH mapping data are discussed in relation to the molecular phylogenetic trees currently available for Veneridae. PMID:24967400

  12. A new genus and species of Thyasiridae (Mollusca, Bivalvia) from deep-water, Beaufort Sea, northern Alaska.

    PubMed

    Valentich-Scott, Paul; Powell, Charles L; Ii; Lorenson, Thomas D; Edwards, Brian E

    2014-01-01

    Bivalve mollusk shells were collected in 2350 m depth in the Beaufort Sea, Arctic Ocean off northern Alaska. Initial identification suggested the specimens were a member of the bivalve family Thyasiridae, but no known eastern Pacific or Arctic living or fossil thyasirid resembled these deep-water specimens. Comparisons were made with the type of the genera Maorithyas Fleming, 1950, Spinaxinus Oliver & Holmes, 2006, Axinus Sowerby, 1821, and Parathyasira Iredale, 1930. We determined the Beaufort Sea species represents a new genus, herein described as Wallerconcha. These specimens also represent a new species, herein named Wallerconchasarae. These new taxa are compared with known modern and fossil genera and species of thyasirds. PMID:25589851

  13. New lucinid bivalves from shallow and deeper water of the Indian and West Pacific Oceans (Mollusca, Bivalvia, Lucinidae).

    PubMed

    Taylor, John D; Glover, Emily A

    2013-01-01

    Four new species and a new genus of lucinid bivalves are described from shallow and deeper waters in the Indian and West Pacific Oceans. The new genus Scabrilucina (subfamily Lucininae) includes the little-known Scabrilucina victorialis (Melvill, 1899) from the Arabian Sea and Scabrilucina vitrea (Deshayes, 1844) from the Andaman Sea as well as a new species Scabrilucina melvilli from the Torres Strait off northeastern Australia. Ferrocina brunei new species (Lucininae) was recovered from 60 m near oil drilling activities off Borneo; its anatomy confirmed the presence of symbiotic bacteria. Two unusual deeper water species of Leucosphaerinae are described, both species included in on-going molecular analyses; Gonimyrtea ferruginea from 400-650 m in the southwest Pacific and Myrtina reflexa from 200-825 m off Zanzibar and Madagascar. PMID:24039537

  14. Corbicula fluminea (Bivalvia: Corbiculidae): a possible second molluscan intermediate host of Echinostoma cinetorchis (Trematoda: Echinostomatidae) in Korea

    PubMed Central

    Jung, Younghun; Park, Yun-Kyu; Hwang, Myung-Gi; Soh, Chin-Thack

    2001-01-01

    More than 1,500 clams of Corbicula fluminea, the most favorable food source of freshwater bivalves in Korea, were collected from 5 localities to examine cercarial and metacercarial infection with Echinostoma cinetorchis. Although 3 clams infected with suspicious E. cinetorchis metacercariae out of 200 specimens collected at Kangjin, Chollanam-do were detected, no cercarial and metacercarial infections with E. cinetorchis were observed in field-collected Corbicula specimens. In the susceptibility experiments with laboratory-reared clams, those infected with miracidia of E. cinetorchis did not release their cercariae up to 60 days after infection. To confirm the identity of second intermediate host of E. cinetorchis experimentally, a total of 30 clams were exposed to the cercariae from Segmentina hemisphaerula that had been infected with miracidia of E. cinetorchis. The clams were susceptible to cercariae of E. cinetorchis with an infection rate of 93.3%. Metacercariae from clams taken more than 7 days after cercarial exposure were fed to rats (S/D strain), and adult worms of E. cinetorchis, characterized by 37-38 collar spines on the head crown, were recovered from the ileocecal regions. This is the first report of C. fluminea as a possible second intermediate host of E. cinetorchis. PMID:11775336

  15. New lucinid bivalves from shallow and deeper water of the Indian and West Pacific Oceans (Mollusca, Bivalvia, Lucinidae)

    PubMed Central

    Taylor, John D.; Glover, Emily A.

    2013-01-01

    Abstract Four new species and a new genus of lucinid bivalves are described from shallow and deeper waters in the Indian and West Pacific Oceans. The new genus Scabrilucina (subfamily Lucininae) includes the little-known Scabrilucina victorialis (Melvill, 1899) from the Arabian Sea and Scabrilucina vitrea (Deshayes, 1844) from the Andaman Sea as well as a new species Scabrilucina melvilli from the Torres Strait off northeastern Australia. Ferrocina brunei new species (Lucininae) was recovered from 60 m near oil drilling activities off Borneo; its anatomy confirmed the presence of symbiotic bacteria. Two unusual deeper water species of Leucosphaerinae are described, both species included in on-going molecular analyses; Gonimyrtea ferruginea from 400–650 m in the southwest Pacific and Myrtina reflexa from 200–825 m off Zanzibar and Madagascar. PMID:24039537

  16. Application of the morpho-functional analysis of hydrobionts ( Anadara sp. cf. Anadara inaequivalvis Bivalvia) to environmental monitoring

    NASA Astrophysics Data System (ADS)

    Kolyuchkina, G. A.; Miljutin, D. M.

    2013-03-01

    The population dynamics and morphological and functional characteristics (the concentration of hemocytes in the hemolymph and the level of histopathology) of the bivalve Anadara sp. cf. Anadara inaequivalvis were studied in 2005-2007 on the North Caucasian coast of the Black Sea. A drastic decline in the abundance of the bivalves simultaneously with cadmium's exceedence in their soft tissues and bottom sediments were recorded in May of 2007. Six months before the manifestation of the population effects, morphological and functional changes (a decrease in the content of hemocytes in the hemolymph and an increase in the content of brown cells in the connective tissue and lipofuscin-like pigment granules in the digestive gland epithelium) in the bivalves were detected that were the consequences of an external effect (presumably, cadmium intoxication). Thus, the morphological and functional changes of the individual Anadaras may be a promising tool for the early detection of the impact of pollutants on benthic ecosystems.

  17. Growth rates of the infaunal bivalve Soletellina alba (Lamarck, 1818) (Bivalvia: Psammobiidae) in an intermittent estuary of southern Australia

    NASA Astrophysics Data System (ADS)

    Matthews, Ty G.; Fairweather, Peter G.

    2003-12-01

    Caging and a mark-recapture design were used to estimate the growth rate of the brittle, infaunal bivalve Soletellina alba in the Hopkins River estuary. The growth of both caged and uncaged individuals was monitored at three sites near the mouth of the estuary over 180 days. Growth rates did not differ for caged and uncaged bivalves, or for bivalves subject to different amounts of handling, or between sites. Growth did differ between consecutive time intervals, which was attributable to negligible growth occurring during the colder months of autumn/winter. Comparisons of the condition (as indicated by total mass for length 3) of S. alba were inconsistent between sites for caged and uncaged bivalves and for those subject to different amounts of handling. Soletellina alba is a rapidly growing bivalve with mean growth rates for the three time intervals being 0.04±0.002 mm day-1 in summer, 0.02±0.001 mm day-1 in autumn and 0.03±0.001 mm day-1 from summer to winter. Using existing literature, it was shown that a significant relationship exists between maximum shell length and onset of sexual maturity in bivalve molluscs. This relationship predicts that S. alba should reach the onset of sexual maturity at 15.8 mm length. Therefore, it appears that it may be possible for juvenile S. alba (<1 mm) to grow, reach sexual maturity and reproduce in between annual mass-mortality events caused by winter flooding.

  18. Phage particles infecting branchial Rickettsiales-like organisms in banded carpet shell Polititapes virgineus (Bivalvia) from Galicia (NW Spain).

    PubMed

    Darriba, S; Ruiz, M; López, C

    2012-09-12

    Basophilic intracellular prokaryotic-like colonies were observed in the gills of banded carpet shell Polititapes virgineus (= Tapes rhomboides) (Linnaeus, 1767) from a natural bed in Galicia (NW Spain). Light microscope observations suggested the presence of 2 types of colonies, but transmission electron microscopy revealed that these were the same Rickettsiales-like colonies, one infected and the other uninfected by phage particles. This is the first report of the presence of phage particles in Rickettsiales-like organisms in the gills of P. virgineus. PMID:22968794

  19. First Report of Anterior Pallial Tentacles in Solen dactylus (Bivalvia: Solenidae) from the Northern Persian Gulf, Iran

    PubMed Central

    Saeedi, Hanieh; Costello, Mark J.; von Cosel, Rudo

    2013-01-01

    Solenidae are deep burrowing bivalves inhabiting intertidal and shallow sub-tidal soft bottom sediments mostly in tropical and sub-tropical areas. Solen dactylus has a restricted distribution within the Indian Ocean. Solen dactylus is frequently found on the sandy-muddy coast of the northern Persian Gulf, Iran. Specimens of S. dactylus were collected since 2006 from Bandar Abbas to study their biology and ecology. During these studies, an unexpected pair of anterior pallial tentacles at the dorsal end of the anterior pallial crest of the mantle was found. In the tentacles, two kinds of epithelial cells (pyramidal and vacuolated) and fibres (radial and longitudinal), and a branch of the pallial nerve located in the centre of a haemocoel, were determined. A possible coherence of a furrow parallel to the anterior shell margin with the presence of anterior pallial tentacles is discussed. All species with long anterior pallial tentacles have anterior shell furrows. Anterior pallial tentacles were found in 10 species of Solenidae from Asia to the Middle East and Europe. The function of the tentacles is unknown. However, more species need to be examined for anterior pallial tentacles and anterior shell furrows to determine if they reflect a common evolutionary history or ecology. PMID:23691053

  20. The male and female complete mitochondrial genome sequences of the Endangered freshwater mussel Potomida littoralis (Cuvier, 1798) (Bivalvia: Unionidae).

    PubMed

    Froufe, Elsa; Gan, Han Ming; Lee, Yin Peng; Carneiro, João; Varandas, Simone; Teixeira, Amílcar; Zieritz, Alexandra; Sousa, Ronaldo; Lopes-Lima, Manuel

    2016-09-01

    Freshwater mussels of the family Unionidae exhibit a particular form of mitochondria inheritance called double uniparental inheritance (DUI), in which the mitochondria are inherited by both male and female parents. The (M)ale and (F)emale mitogenomes are highly divergent within species. In the present study, we determine and describe the complete M and F mitogenomes of the Endangered freshwater mussel Potomida littoralis (Cuvier, 1798). The complete M and F mitogenomes sequences are 16 451 bp and 15 787 bp in length, respectively. Both F and M have the same gene content: 13 protein-coding genes (PCGs), 22 transfer RNA (trn) and 2 ribosomal RNA (rrn) genes. Bayesian analyses based on the concatenated nucleotide sequences of 12 PCGs and 2 rrn genes of both genomes, including mitogenome sequences available from related species, were performed. Male and Female lineages are monophyletic within the family, but reveal distinct phylogenetic relationships. PMID:27158872

  1. Microsatellite loci for dreissenid mussels (Mollusca: Bivalvia: Dreissenidae) and relatives: markers for assessing exotic and native populations.

    PubMed

    Feldheim, Kevin A; Brown, Joshua E; Murphy, Douglas J; Stepien, Carol A

    2011-07-01

    We developed and tested 14 new polymorphic microsatellite loci for dreissenid mussels, including the two species that have invaded many freshwater habitats in Eurasia and North America, where they cause serious industrial fouling damage and ecological alterations. These new loci will aid our understanding of their genetic patterns in invasive populations as well as throughout their native Ponto-Caspian distributions. Eight new loci for the zebra mussel Dreissena polymorpha polymorpha and six for the quagga mussel D. rostriformis bugensis were compared with new results from six previously published loci to generate a robust molecular toolkit for dreissenid mussels and their relatives. Taxa tested include D. p. polymorpha, D. r. bugensis, D. r. grimmi, D. presbensis, the 'living fossil'Congeria kusceri, and the dark false mussel Mytilopsis leucophaeata (the latter also is invasive). Overall, most of the 24 zebra mussel (N = 583) and 13 quagga mussel (N = 269) population samples conformed to Hardy-Weinberg equilibrium expectations for the new loci following sequential Bonferroni correction. The 11 loci (eight new, three previously published) evaluated for D. p. polymorpha averaged 35.1 alleles and 0.72 mean observed heterozygosity per locus, and 25.3 and 0.75 for the nine loci (six new, three previously published) developed for D. r. bugensis. All but three of these loci successfully amplified the other species of Dreissena, and all but one also amplified Congeria and Mytilopsis. All species and populations tested were significantly divergent using the microsatellite data, with neighbour-joining trees reflecting their evolutionary relationships; our results reveal broad utility for resolving their biogeographic, evolutionary, population and ecological patterns. PMID:21457480

  2. Early replication dynamics of sex-linked mitochondrial DNAs in the doubly uniparental inheritance species Ruditapes philippinarum (Bivalvia Veneridae).

    PubMed

    Guerra, D; Ghiselli, F; Milani, L; Breton, S; Passamonti, M

    2016-03-01

    Mitochondrial homoplasmy, which is maintained by strictly maternal inheritance and a series of bottlenecks, is thought to be an adaptive condition for metazoans. Doubly uniparental inheritance (DUI) is a unique mode of mitochondrial transmission found in bivalve species, in which two distinct mitochondrial genome (mtDNA) lines are present, one inherited through eggs (F) and one through sperm (M). During development, the two lines segregate in a sex- and tissue-specific manner: females lose M during embryogenesis, whereas males actively segregate it in the germ line. These two pivotal events are still poorly characterized. Here we investigated mtDNA replication dynamics during embryogenesis and pre-adulthood of the venerid Ruditapes philippinarum using real-time quantitative PCR. We found that both mtDNAs do not detectably replicate during early embryogenesis, and that the M line might be lost from females around 24 h of age. A rise in mtDNA copy number was observed before the first reproductive season in both sexes, with the M mitochondrial genome replicating more than the F in males, and we associate these boosts to the early phase of gonad production. As evidence indicates that DUI relies on the same molecular machine of mitochondrial maternal inheritance that is common in most animals, our data are relevant not only to DUI but also to shed light on how differential segregations of mtDNA variants, in the same nuclear background, may be controlled during development. PMID:26626575

  3. Prodigious polyphyly in imperilled freshwater pearly-mussels (Bivalvia: Unionidae): a phylogenetic test of species and generic designations

    USGS Publications Warehouse

    Lydeard, Charles; Minton, Russell L.; Williams, James D.

    2000-01-01

    Unionid bivalves or freshwater pearly-mussels (Unionoidea: Unionidae) serve as an exemplary system for examining many of the problems facing systematists and conservation biologists today. Most of the species and genera were described in the late 1800s and early 1900s, but few phylogenetic studies have been conducted to test conventional views of species and classification. Pearly-mussels of Gulf Coastal drainages of the southeastern United States from the Escambia (southern Alabama to Florida) to the Suwannee Rivers (Florida) are a unique fauna comprised of approximately 100 species, with about 30 endemic to the region. In this study, mitochondrial cytochrome c oxidase subunit I and 16S rRNA gene sequences were used to test the monophyly and to estimate evolutionary relationships of five unionid species representing three different genera. The molecular phylogenies depict all three genera as polyphyletic. The prodigious polyphyly exhibited within unionids is due to incorrect notions of homology and false assumptions about missing anatomical data. In contrast, the molecular phylogeny provides evidence to support the recognition of all five unionid species as distinct evolutionary entities. Furthermore, molecular genealogical evidence supports the elevation of Quincuncina infucata (Conrad) of the Suwannee River to species level, for which Q. kleiniana (Lea) is available.

  4. Pathological Changes Associated with Eggs and Larvae of Unionicola sp. (Acari: Unionicolidae) Infecting Strophitus connasaugaensis (Bivalvia: Unionidae) from Alabama Creeks.

    PubMed

    McElwain, Andrew; Fleming, Ryan; Lajoie, Megan; Maney, Colleen; Springall, Brian; Bullard, Stephen A

    2016-02-01

    We detail gross and histopathological changes associated with infection by the eggs, larvae, and cuticular remnants of Unionicola sp. in the mantle, gill, and visceral mass of 25 Alabama creekmussels, Strophitus connasaugaensis, collected during May 2010 through July 2012 from 2 Alabama streams. A multitude (estimated mean intensity >100) of mite eggs and larvae typically infected mantle, gill, and visceral mass integument. Pathology associated with eggs (prevalence = 0.57) and larvae (prevalence = 0.39) typically consisted of localized distension of the infection site; a host response to these infections was indeterminate. However, larval mites embedded in suprabranchial connective tissues were typically encapsulated (prevalence = 0.89). Mite remnants (prevalence = 0.5) occurred in mantle, gill, visceral mass integument, foot, heart, pericardial gland, intestinal lamina propria, and were typically encapsulated. We speculate that S. connasaugaensis clears some infections but is recolonized by autoinfection or horizontal dispersal of mites in the stream. Noteworthy is that high-intensity infections seemingly do not markedly impact the histological picture of mussel tissues, indicating that mites are relatively benign symbionts that are of little concern to mussels under normal environmental conditions. PMID:26535859

  5. Diversity and trans-arctic invasion history of mitochondrial lineages in the North Atlantic Macoma balthica complex (Bivalvia: Tellinidae).

    PubMed

    Nikula, Raisa; Strelkov, Petr; Väinölä, Risto

    2007-04-01

    The history of repeated inter- or transoceanic invasions in bivalve mollusks of the circumpolar Macoma balthica complex was assessed from mtDNA COIII sequences. The data suggest that four independent trans-Arctic invasions, from the Pacific, gave rise to the current lineage diversity in the North Atlantic. Unlike in many other prominent North Atlantic littoral taxa, no evidence for (postinvasion) trans-Atlantic connections was found in the M. balthica complex. The earliest branch of the mtDNA tree is represented by the temperate-boreal North American populations (=Macoma petalum), separated from the M. balthica complex proper in the Early Pliocene at latest. The ensuing trans-Arctic invasions established the North European M. b. rubra, which now prevails on the North Sea and northeast Atlantic coasts, about two million years ago, and the currently northwest Atlantic M. balthica lineage in the Canadian Maritimes, in the Middle Pleistocene. The final reinvasion(s) introduced a lineage that now prevails in a number of North European marginal seas and is still hardly distinguishable from North Pacific mtDNA (M. b. balthica). We used coalescence simulation analyses to assess the age of the latest invasion from the Pacific to the northeast Atlantic. The results refute the hypothesis of recent, human-mediated reintroductions between northeast Pacific and the North European marginal seas in historical times. Yet they also poorly fit the alternative hypotheses of an early postglacial trans-Arctic invasion (< 11 thousand years ago), or an invasion during the previous Eemian interglacial (120 thousand years ago). Divergence time estimates rather fall in the Middle Weichselian before the Last Glacial Maximum, in conflict with the conventional thinking of trans-Arctic biogeographical connections; an early Holocene reinvasion may still be regarded as the most plausible scenario. Today, the most recently invaded Pacific mtDNA lineage is found admixed with the earlier established European Atlantic "rubra" lineage in the Baltic Sea and in Barents Sea populations east of the Varanger peninsula, and it is practically exclusive in the White and Pechora seas. Yet mtDNA does not always constitute an unequivocal taxonomic marker at individual level; the marginal populations represent hybrid swarms of the Atlantic and Pacific lineages in their nuclear genes. PMID:17439622

  6. Uptake of methyl mercury by the floater mussel, Pyganodon grandis (Bivalvia, Unionidae), caged in a flooded wetland

    SciTech Connect

    Malley, D.F.; Stewart, A.R.; Hall, B.D. |

    1996-06-01

    A 16.7-ha wetland with a pond at the Experimental Lakes Area, northwestern Ontario, was experimentally flooded to determine causes of elevated waterborne methyl mercury (MeHg) associated with impoundment. Unionid mussels, Pyganodon grandis (formerly Anodonata grandis grandis) were caged in the experimental pond before and after flooding to determine their ability to monitor the elevated waterborne MeHg. Mussels were also caged in a reference wetland pond and in the lake from which they were collected (source lake). Background levels of MeHg in source lake mussel body parts were in the order mantle < gill or visceral remains < foot or kidney and ranged from 108 to 618 ng/g dry weight. Caging in the source lake did not alter MeHg concentration in any body part. Mussels transplanted to the ponds for 90 d showed statistically significant increases above background MeHg in the mantle and visceral remains in the preflood experimental pond (waterborne MeHg 0.24 ng/L). The visceral remains of mussels in the reference pond contained higher levels of MeHg than did those in the preflood experimental pond. Flooding increased waterborne MeHg from 0.1 to 2.3 ng/L and resulted in an increase in MeHg and total Hg (THg) in the mantle, foot, and visceral remains of mussels in the experimental pond. Inexplicably, mussels caged in a hypoxic environment in the experimental pond lost MeHg and THg from all body parts. The authors concluded that not only can P. grandis monitor elevation in waterborne MeHg with flooding, but the MeHg levels in mussels also reflect small differences in background levels of natural MeHg in ponds.

  7. Changes in the freshwater mussel (Bivalvia: Unionidae) fauna of the Bear Creek system of Northwest Alabama and Northeast Mississippi

    USGS Publications Warehouse

    McGregor, S.W.; Garner, J.T.

    2003-01-01

    Drastic reductions in diversity and abundance of mussel populations are documented in many systems. Bear Creek, located in northwest Alabama and northeast Mississippi, has seen changes to its fauna, possibly the result of impoundment, channelization, wastewater discharge, and sedimentation from such sources such as strip mining, agriculture, and silviculture. The most obvious influences have been impoundment of the lowermost 32 km of Bear Creek by Pickwick Reservoir of Tennessee River, the construction of four dams within the system, construction of a 29-km-long channel designed to limit flooding, and bank destabilization. Mussels are absent from much of the system and faunal composition has apparently been altered where mussels persist, based on comparison to limited previous studies. The most notable changes are the loss of Cumberlandian species diversity and the apparent increase in Ohioan species diversity. We sampled 40 stations in the Bear Creek system and report 32 mussel species live or fresh dead, including 3 Cumberlandian species, and 2 others weathered dead. Fourteen of these species were not reported in two earlier studies. During this study the most depauperate populations were upstream of Bear Creek km 41.0 and in tributaries. No mussels were collected immediately downstream of dams, and diversity gradually increased downstream from the lowermost main channel dam until 28 species occurred together in a free-flowing reach shortly before entering Pickwick Reservoir. One weathered dead zebra mussel, Dreisenna polymorpha, was also collected, representing a new tributary record. The population of Epioblasma brevidens in Bear Creek is the only population of that species known in the lower Tennessee River system, and the population of Lexingtonia dolabelloides, another new tributary record, is one of only two populations of that species known downstream of Paint Rock River.

  8. Is the body condition of the invasive zebra mussel (Dreissena polymorpha) enhanced through attachment to native freshwater mussels (Bivalvia, Unionidae)?

    PubMed

    Pilotto, Francesca; Sousa, Ronaldo; Aldridge, David C

    2016-05-15

    The invasion of zebra mussels, Dreissena polymorpha, into Western Europe and North America has driven widespread ecological change. Attachment of zebra mussels to the shell of native unionoid mussels has resulted in reductions in unionoid abundance and, in extreme cases, their localised extirpations. While the impacts of zebra mussels on infested unionoids are well documented, the possible benefits of the association to the zebra mussel have been little considered. We collected zebra mussels attached to unionoids and to inanimate structures. Zebra mussels attached to unionoids had significantly larger shells, higher standardized body mass and glycogen content than those attached to inanimate substrates, suggesting that D. polymorpha benefits from settling upon unionoids. The body condition of individual zebra mussels was negatively correlated with the number of zebra mussels attached to the unionoid, indicating intraspecific competition. Therefore, zebra mussels seem positively affected through attachment to unionoid mussels, but that these benefits decrease at higher densities of fouling. This association may offer advantages to the spread of zebra mussels within unionoid-rich systems, especially at sites with soft substrates and at the early stages of the invasion process where intraspecific competition is likely to be lower and benefits to the zebra mussels are higher. PMID:26925735

  9. Acute toxicity and accumulation of the piscicide 3-trifluoromethyl-4-nitrophenol (TFM) in freshwater mussels (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Waller, Diane L.; Rach, Jeffrey J.; Luoma, James A.

    1998-01-01

    We compared the acute toxicity and initial accumulation of the piscicide TFM (3-trifluoromethyl-4-nitrophenol) in the freshwater unionacean mussels, Obliquaria reflexa and Fusconaia flava. Acute 48 h toxicity tests were conducted to determine the LC50 values for each species. The initial uptake clearances of TFM were measured by exposing the mussels to [14C]-TFM and counting the radioactivity in four organ tissues (foot, gill, mantle and viscera) over 48 h. TFM was about 2-fold more toxic to O. reflexa (LC50 1.80 mg l-1) than to F. flava (LC50 3.81 mg L-1) and the difference was not explained by accumulation patterns. The initial uptake clearance rates (0–6 h) for the whole body were similar between the species (11.2 ml g-1 h-2 in O. reflexa and 9.5 ml g-1 h-1 in F. flava). The accumulation of TFM residues among the organ tissues was also similar between species. The uptake clearance rates (ml g-1 h-1) of TFM equivalents were generally highest in the gill, but not significantly different than other organ tissues. The normalized concentration of TFM residues (μg per g whole body) was highest in the viscera. The toxicity data suggest that the mortality of both species would be minimal from sea lamprey control treatments with TFM. However, the behavioural effects and accumulation rates also indicate that mussels do not effectively avoid TFM exposure by valve closure.

  10. Acute toxicity and accumulation of the piscicide 3-trifluoromethyl-4- nitrophenol (TFM) in freshwater mussels (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Waller, D.L.; Rach, J.J.; Luoma, J.A.

    1998-01-01

    We compared the acute toxicity and initial accumulation of the piscicide TFM (3-trifluoromethyl-4-nitrophenol) in the freshwater unionacean mussels, Obliquaria reflexa and Fusconaia flava. Acute 48 h toxicity tests were conducted to determine the LC50 values for each species. The initial uptake clearances of TFM were measured by exposing the mussels to [14C]-TFM and counting the radioactivity in four organ tissues (foot, gill, mantle and viscera) over 48 h. TFM was about 2-fold more toxic to O. reflexa (LC50 1.80 mg I-1) than to F. flava (LC50 3.81 mg L-1) and the difference was not explained by accumulation patterns. The initial uptake clearance rates (0-6 h) for the whole body were similar between the species (11.2 ml g-1 h-2 in O. reflexa and 9.5 ml g-1 h-1 in F. flava). The accumulation of TFM residues among the organ tissues was also similar between species. The uptake clearance rates (ml g-1 h-1) of TFM equivalents were generally highest in the gill, but not significantly different than other organ tissues. The normalized concentration of TFM residues (??g per g whole body) was highest in the viscera. The toxicity data suggest that the mortality of both species would be minimal from sea lamprey control treatments with TFM. However, the behavioural effects and accumulation rates also indicate that mussels do not effectively avoid TFM exposure by valve closure.

  11. Seasonal growth and mortality of juveniles of Lampsilis fasciola (Bivalvia: Unionidae) released to a fish hatchery raceway

    USGS Publications Warehouse

    Hanlon, S.D.; Neves, R.J.

    2006-01-01

    Recent efforts to restore remnant or extirpated populations of freshwater mussels have focused on artificial propagation as an effective and practical conservation strategy. Although artificially cultured juveniles have been produced and released to the wild at various times of the year, no study has investigated the best time of year to release these juveniles. Newly metamorphosed juveniles of the wavyrayed lampmussel (Lampsilis fasciola) were released into a stream-fed fish hatchery raceway during March, June, and September. Growth and survival rates were measured 32, 52, 72, and 92 days post-metamorphosis. Juveniles released in June experienced the greatest growth and survival rates. Juveniles released in September and March experienced high mortality within the first month of release and exhibited poor growth in the cool water conditions typical of those seasons. Overwinter survival exhibited a size-dependent relationship.

  12. Low Genetic Diversity and High Invasion Success of Corbicula fluminea (Bivalvia, Corbiculidae) (Müller, 1774) in Portugal

    PubMed Central

    Gomes, Cidália; Sousa, Ronaldo; Mendes, Tito; Borges, Rui; Vilares, Pedro; Vasconcelos, Vitor; Guilhermino, Lúcia; Antunes, Agostinho

    2016-01-01

    The Asian clam, Corbicula fluminea, is an invasive alien species (IAS) originally from Asia that has spread worldwide causing major ecological and economic impacts in aquatic ecosystems. Here, we evaluated C. fluminea genetic (using COI mtDNA, CYTb mtDNA and 18S rDNA gene markers), morphometric and sperm morphology variation in Portuguese freshwater ecosystems. The COI marker revealed a single haplotype, which belongs to the Asian FW5 invasive lineage, suggesting a common origin for all the 13 Portuguese C. fluminea populations analysed. Morphometric analyses showed differences between the populations colonizing the North (with the exception of the Lima River) and the Centre/South ecosystems. The sperm morphology examination revealed the presence of biflagellate sperm, a distinctive character of the invasive androgenetic lineages. The low genetic variability of the Portuguese C. fluminea populations and the pattern of sperm morphology have been illuminating for understanding the demographic history of this invasive species. We hypothesize that these populations were derived from a unique introductory event of a Corbicula fluminea FW5 invasive androgenic lineage in the Tejo River, which subsequently dispersed to other Portuguese freshwater ecosystems. The C. fluminea asexual reproductive mode may have assisted these populations to become highly invasive despite the low genetic diversity. PMID:27391333

  13. Multi-locus fossil-calibrated phylogeny, biogeography and a subgeneric revision of the Margaritiferidae (Mollusca: Bivalvia: Unionoida).

    PubMed

    Bolotov, Ivan N; Vikhrev, Ilya V; Bespalaya, Yulia V; Gofarov, Mikhail Y; Kondakov, Alexander V; Konopleva, Ekaterina S; Bolotov, Nikita N; Lyubas, Artyom A

    2016-10-01

    The taxonomy and biogeographic history of the bivalve family Margaritiferidae are controversial because previous molecular studies did not provide a well-resolved phylogenetic framework for these enigmatic freshwater mussels that have extensive but disjunct distribution in North America, Eurasia and North Africa. In this study, we present a new, fossil-calibrated phylogenetic hypothesis based on five molecular markers (∼4kb of total length) for ten species. Our results indicate that all recent margaritiferids are in the single genus, Margaritifera Schumacher, 1816. Additionally, we identified three relatively well-supported phylogenetic clades that are valid subgenera, i.e., Margaritifera s. str. (Holarctic), Margaritanopsis (=Cumberlandia) (southeast North America-southeast Asia disjunct) and Pseudunio (Mediterranean). We suggest that the crown lineage of the Margaritiferidae most likely originated in the Cretaceous (mean age 93Ma, 95% CI 66-126Ma). The combined results of ancestral area reconstructions based on the three different approaches (S-DIVA, DEC and S-DEC) showed that ancient vicariance events could have played an important role in speciation within the family. The rates of mitochondrial evolution of margaritiferids are notably slow, which may be associated with their longevity, long generation time and low metabolic rates. Our findings highlight the complex biogeographic history of the Margaritiferidae as an intermixing of ancient vicariance and dispersal events, which were most likely associated with some inland barriers, continental movements and a sea level dynamic. PMID:27444710

  14. Mitogenomics of southern hemisphere blue mussels (Bivalvia: Pteriomorphia): Insights into the evolutionary characteristics of the Mytilus edulis complex

    PubMed Central

    Gaitán-Espitia, Juan Diego; Quintero-Galvis, Julian F.; Mesas, Andres; D’Elía, Guillermo

    2016-01-01

    Marine blue mussels (Mytilus spp.) are widespread species that exhibit an antitropical distribution with five species occurring in the Northern Hemisphere (M. trossulus, M. edulis, M. galloprovincialis, M. californianus and M. coruscus) and three in the Southern Hemisphere (M. galloprovincialis, M. chilensis and M. platensis). Species limits in this group remain controversial, in particular for those forms that live in South America. Here we investigated structural characteristics of marine mussels mitogenomes, based on published F mtDNA sequences of Northern Hemisphere species and two newly sequenced South American genomes, one from the Atlantic M. platensis and another from the Pacific M. chilensis. These mitogenomes exhibited similar architecture to those of other genomes of Mytilus, including the presence of the Atp8 gene, which is missing in most of the other bivalves. Our evolutionary analysis of mitochondrial genes indicates that purifying selection is the predominant force shaping the evolution of the coding genes. Results of our phylogenetic analyses supported the monophyly of Pteriomorphia and fully resolved the phylogenetic relationships among its five orders. Finally, the low genetic divergence of specimens assigned to M. chilensis and M. platensis suggests that these South American marine mussels represent conspecific variants rather than distinct species. PMID:27241855

  15. Differences in absolute and relative growth between two shell forms of Pinna nobilis (Mollusca: Bivalvia) along the Tunisian coastline

    NASA Astrophysics Data System (ADS)

    Rabaoui, Lotfi; Tlig-Zouari, Sabiha; Katsanevakis, Stelios; Belgacem, Walid; Hassine, Oum Kalthoum Ben

    2011-08-01

    This study investigated the absolute and relative growth patterns of the fan mussel Pinna nobilis along the Tunisian coastline, taking into consideration both the variability among different areas and between the two shell forms "combed" and "straight and wide". Five subpopulations of the species were sampled, one from northern, two from eastern and two from southern Tunisia. Various assumptions on the growth patterns were tested based on an information theory approach and multi-model inference. For absolute growth, the assumption of different growth patterns between the two shell forms of P. nobilis and no difference among subpopulations was the most supported by the data. For the same age, "straight and wide" individuals gained on average greater lengths than the "combed" individuals. The absolute growth of the species was found to be asymptotic and the logistic model was the one most supported by the data. As for the relative growth, apart from the classical allometric model Y = aXb, more complicated models of the form ln Y = f(ln X) that either assumed non-linearities or breakpoints were tested in combination with assumptions for possible differences between the two forms and among subpopulations. Among the eight studied relationships between morphometric characters, the classical allometric model was supported in only two cases, while in all other cases more complicated models were supported. Moreover, the assumption of different growth patterns between the two forms was supported in three cases and the assumption of different growth patterns among subpopulations in four cases. Although precise relationships between the morphometric plasticity of the fan mussel and environmental factors have not been proven in this paper, local small scale constraints might be responsible of the different growth patterns observed in the same locality. A possible co-action of genetic factors should be evaluated in the future.

  16. A new species of Pulvinites (Mollusca: Bivalvia) from the upper Paleocene Paspotansa Member of the Aquia Formation in Virginia ( USA).

    USGS Publications Warehouse

    Ward, L.W.; Waller, T.R.

    1988-01-01

    Pulvinites lawrencei n.sp. is described from the upper Paleocene (Landenian Stage) Paspotansa Member of the Aquia Formation in Stafford County, Virginia. This is the first report of a member of the pteriacean family Pulvinitidae in the Tertiary on either side of the Atlantic, the only other post-Mesozoic records of Pulvinites being in the Paleocene of California and the present-day Pacific off southeast Australia. The stratigraphic setting and co-occurring molluscan assemblage of the new species indicate shallow-shelf, open-marine conditions with near normal salinities. -Authors

  17. Life cycle, population dynamics, growth and production of Abra segmentum (Mollusca, Bivalvia) at low salinities in a Mediterranean lagoon

    NASA Astrophysics Data System (ADS)

    Kevrekidis, Theodoros; Kasapis, K.; Kalpia, V.

    2009-12-01

    Aspects of the biology of Abra segmentum were investigated at low salinities in a Mediterranean coastal lagoon (Monolimni Lagoon, Northern Aegean Sea). Monthly samples were collected during the period from February 1998 to January 1999. Recruitment occurred from mid-spring to early autumn (0.3-5.7 psu) and recruits grew during summer and autumn (1.2-5.7 psu), while a major part vanished during next autumn, displaying a maximum life span of about 20 months. A positive correlation was found between the percentage of individuals having a shell length of ≤3.5 mm and temperature; age group 0 showed a growth rate of 0.97 mm per month, and the largest individual collected had a 19.76 mm shell length. The population density sharply increased during late spring (0.3-1.2 psu); this increase was followed by a decline during summer and, afterwards, a gradual increase up to late autumn. Secondary production calculated by the size-frequency method gave a mean annual density ( n) of 3,357 individuals m-2, a mean annual biomass ( B) of 21.98 g DW m-2, an annual production ( P) of 73.72 g DW m-2 and a P: B ratio of 3.35. A comparison of the present data with available data of A. segmentum populations from higher salinity habitats revealed that this bivalve in the study area showed a life history pattern similar to that of other populations of the species and a comparatively high growth rate, maximum body size, n, B, P and P: B ratio. Our findings suggest that the studied aspects of A. segmentum biology could not be markedly affected by low salinities.

  18. Integrative study of a new cold-seep mussel (Mollusca: Bivalvia) associated with chemosynthetic symbionts in the Marmara Sea

    NASA Astrophysics Data System (ADS)

    Ritt, Bénédicte; Duperron, Sébastien; Lorion, Julien; Sara Lazar, Cassandre; Sarrazin, Jozée

    2012-09-01

    Recently, small Idas-like mussels have been discovered living on carbonate crusts associated with cold-seeps in the Marmara Sea. These mussels, here referred to as Idas-like nov. sp., differ morphologically and genetically from another species identified as Idas aff. modiolaeformis, living in the same type of ecosystem in the Nile Deep-Sea Fan (eastern Mediterranean Sea). A phylogenetic analysis confirms the distinction between the two species, which belong to highly divergent lineages. Carbon stable isotope values, as well as the detection of thiotroph-related bacteria in the gill tissue, support the presence of a symbiotic, thiotroph-derived nutrition. In contrast, Idas aff. modiolaeformis displays six different types of symbionts. Finally our size-frequency data suggest that the recruitment is continuous in the examined area. The present study extends the documented distribution of symbiont-bearing mussels to the Marmara Sea, and contributes to the characterisation of biological communities in this recently explored area.

  19. Numerical Quantification of Perkinsus Marinus in the American Oyster Crassostrea virginicata (Gmelin 1791) (Mollusca: Bivalvia) by Modern Stereology

    EPA Science Inventory

    Species of Perkinsus are responsible for high mortalities of bivalve molluscs world-wide. Techniques to accurately estimate parasites in tissues are required to improve understanding of perkinsosis. This study quantifies the number and tissue distribution of Perkinsus marinus in ...

  20. Cytogenetic characterisation of the razor shells Ensis directus (Conrad, 1843) and E. minor (Chenu, 1843) (Mollusca: Bivalvia)

    NASA Astrophysics Data System (ADS)

    González-Tizón, Ana M.; Rojo, Verónica; Vierna, Joaquín; Jensen, K. Thomas; Egea, Emilie; Martínez-Lage, Andrés

    2013-03-01

    The European razor shell Ensis minor (Chenu 1843) and the American E. directus (Conrad 1843) have a diploid chromosome number of 38 and remarkable differences in their karyotypes: E. minor has four metacentric, one metacentric-submetacentric, five submetacentric, one subtelocentric and eight telocentric chromosome pairs, whereas E. directus has three metacentric, two metacentric-submetacentric, six submetacentric, six subtelocentric and two telocentric pairs. Fluorescent in situ hybridisation (FISH) using a major ribosomal DNA probe located the major ribosomal genes on one submetacentric chromosome pair in both species; FISH with a 5S ribosomal DNA (5S rDNA) probe rendered one chromosomal (weak) signal for E. minor and no signal for E. directus, supporting a more dispersed organisation of 5S rDNA compared to the major ribosomal genes. The vertebrate telomeric sequence (TTAGGG) n was located on both ends of each chromosome, and no interstitial signals were detected. In this work, a comparative karyological analysis was also performed between the four Ensis species analysed revealing that the three European species studied so far, namely E. minor, E. siliqua (Linné 1758) and E. magnus Schumacher 1817 show more similarities among them than compared to the American species E. directus. In addition, clear karyotype differences were found between the morphologically similar species E. minor and E. siliqua.

  1. Mitogenomics of southern hemisphere blue mussels (Bivalvia: Pteriomorphia): Insights into the evolutionary characteristics of the Mytilus edulis complex.

    PubMed

    Gaitán-Espitia, Juan Diego; Quintero-Galvis, Julian F; Mesas, Andres; D'Elía, Guillermo

    2016-01-01

    Marine blue mussels (Mytilus spp.) are widespread species that exhibit an antitropical distribution with five species occurring in the Northern Hemisphere (M. trossulus, M. edulis, M. galloprovincialis, M. californianus and M. coruscus) and three in the Southern Hemisphere (M. galloprovincialis, M. chilensis and M. platensis). Species limits in this group remain controversial, in particular for those forms that live in South America. Here we investigated structural characteristics of marine mussels mitogenomes, based on published F mtDNA sequences of Northern Hemisphere species and two newly sequenced South American genomes, one from the Atlantic M. platensis and another from the Pacific M. chilensis. These mitogenomes exhibited similar architecture to those of other genomes of Mytilus, including the presence of the Atp8 gene, which is missing in most of the other bivalves. Our evolutionary analysis of mitochondrial genes indicates that purifying selection is the predominant force shaping the evolution of the coding genes. Results of our phylogenetic analyses supported the monophyly of Pteriomorphia and fully resolved the phylogenetic relationships among its five orders. Finally, the low genetic divergence of specimens assigned to M. chilensis and M. platensis suggests that these South American marine mussels represent conspecific variants rather than distinct species. PMID:27241855

  2. Early life history and spatiotemporal changes in distribution of the rediscovered Suwannee moccasinshell Medionidus walkeri (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Johnson, Nathan A.; Mcleod, John; Holcomb, Jordan; Rowe, Matthew T.; Williams, James D.

    2016-01-01

    Accurate distribution data are critical to the development of conservation and management strategies for imperiled species, particularly for narrow endemics with life history traits that make them vulnerable to extinction. Medionidus walkeri is a rare freshwater mussel endemic to the Suwannee River Basin in southeastern North America. This species was rediscovered in 2012 after a 16-year hiatus between collections and is currently proposed for listing under the Endangered Species Act. Our study fills knowledge gaps regarding changes in distribution and early life history requirements of M. walkeri. Spatiotemporal changes in M. walkeri distribution were displayed using a conservation status assessment map incorporating metadata from 98 historical (1916–1999) and 401 recent (2000–2015) site surveys from museums and field notes representing records for 312 specimens. Recent surveys detected M. walkeri only in the middle Suwannee subbasin (n = 86, 22 locations) and lower Santa Fe subbasin (n = 2, 2 locations), and it appears the species may be extirpated from 67% of historically occupied 10-digit HUCs. In our laboratory experiments, M. walkeri successfully metamorphosed onPercina nigrofasciata (56.2% ± 8.9) and Etheostoma edwini (16.1% ± 7.9) but not on Trinectes maculatus, Lepomis marginatus, Notropis texanus, Noturus leptacanthus, Etheostoma fusiforme, orGambusia holbrooki. We characterize M. walkeri as a lure-displaying host fish specialist and a long-term brooder (bradytictic), gravid from fall to early summer of the following year. The early life history and distribution data presented here provide the baseline framework for listing decisions and future efforts to conserve and recover the species.

  3. Deep-water Thyasiridae (Mollusca: Bivalvia) from the Oman Margin, Arabian Sea, new species and examples of endemism and cosmopolitanism.

    PubMed

    Oliver, P Graham

    2015-01-01

    Seven species of Thyasiridae are reported from the Oman Margin of the Arabian Sea at depths between 688 m and 3356 m. Hypoxic conditions exist at depths between 400 and 1200 m and three species are restricted to this zone and to the Arabian Sea. Leptaxinus indusarium has also been recorded from the Indus Fan and Channelaxinus investigatoris from off Sri Lanka. A new species Thyasira anassa sp. nov. is described from the hypoxic zone. Another four species are recorded from the abyssal zone where oxygen levels are typical for the deep ocean. Here another new species is described, Parathyasira bamberi sp. nov. but the other species could not be conclusively identified because of close affinity with populations from other oceans.  Deep water Atlantic species Axinulus croulinensis and Mendicula ferruginosa are apparently present in the abyssal Indian Ocean while another thyasirid shell is very close to Channelaxinus excavatus from the Eastern Pacific and C. perplicata from the Atlantic. Accompanying these abyssal thyasirids were other bivalve species, Deminucula atacellana, Limopsis pelagica and Bentharca asperula that cannot be distinguished by morphology from their Atlantic populations. It is concluded that using morphology alone that the abyssal species may well be cosmopolitan in distribution. PMID:26250317

  4. Larvae of Chironomids (Insecta, Diptera) Encountered in the Mantle Cavity of Zebra Mussels, Dreissena polymorpha (Bivalvia, Dreissenidae)

    NASA Astrophysics Data System (ADS)

    Mastitsky, Sergey E.; Samoilenko, Vera M.

    2005-02-01

    The paper includes data on species composition of chironomid larvae which were encountered in the mantle cavity of zebra mussels (Dreissena polymorpha) within 7 waterbodies in the Republic of Belarus. All were found to be free-living species commonly present in periphyton and/or benthos. A long-term study of the seasonal dynamics of these larvae in Dreissena did not reveal any typical pattern. Our data suppose that chironomids do not have an obligate association with zebra mussels and possibly enter their mantle cavity inadvertently.

  5. Effects of anthracene on filtration rates, antioxidant defense system, and redox proteomics in the Mediterranean clam Ruditapes decussatus (Mollusca: Bivalvia).

    PubMed

    Sellami, Badreddine; Khazri, Abdelhafidh; Louati, Héla; Dellali, Mohamed; Driss, Mouhamed Ridha; Aïssa, Patricia; Mahmoudi, Ezzeddine; Hamouda, Beyrem; Coelho, Ana Varela; Sheehan, David

    2015-07-01

    This study aimed at analyzing the impact of a toxic polyaromatic hydrocarbon (PAH), anthracene (ANT), on Ruditapes decussatus collected from a Tunisian coastal lagoon (Bizerte Lagoon). Filtration rates, several antioxidant enzymes--superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx), glutathione reductase (GR), and glutathione transferase (GST)--as well as indices of protein oxidation status were determined in various tissues of this bivalve. Specimens were exposed to 100 μg/L of ANT for 2 days. ANT levels were evaluated using HPLC and were detected in the gill and digestive gland at different amounts. ANT exposure altered the behavior of bivalves by changing the siphon movement and decreasing filtration rate significantly. The enzymatic results indicated that ANT exposure affected the oxidative stress status of the gills of R. decussatus. In addition, modification of proteins was detected in the gills using redox proteomics after ANT treatment. Three protein spots were successfully identified by matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry (MALDI-TOF-MS). These proteins can be roughly related to muscle contraction function. In contrast, no significant modification of enzymatic and protein responses was detected in the digestive gland after ANT treatment. These data demonstrate that combined behavioral and biochemical analyses are a powerful tool to provide valuable insights into possible mechanisms of toxicity of anthracene in R. decussatus. Additionally, the results highlight the potential of the gill as a valuable candidate for investigating PAH toxicity. PMID:25779113

  6. Frequency, Magnitude, and Possible Causes of Stranding and Mass-Mortality Events of the Beach Clam Tivela mactroides (Bivalvia: Veneridae)

    PubMed Central

    Turra, Alexander; Pombo, Maíra; Petracco, Marcelo; Siegle, Eduardo; Fonseca, Mariana; Denadai, Márcia R.

    2016-01-01

    Stranding combined with mass-mortality events of sandy-beach organisms is a frequent but little-understood phenomenon, which is generally studied based on discrete episodes. The frequency, magnitude, and possible causes of stranding and mass-mortality events of the trigonal clam Tivela mactroides were assessed based on censuses of stranded individuals, every four days from September 2007 through December 2008, in Caraguatatuba Bay, southeastern Brazil. Stranded clams were classified as dying (closed valves did not open when forced) or dead (closed valves were easily opened). Information on wave parameters and the living intertidal clam population was used to assess possible causes of stranding. This fine-scale monitoring showed that stranding occurred widely along the shore and year-round, with peaks interspersed with periods of low or no mortality. Dead clams showed higher mean density than dying individuals, but a lower mean shell length, attributed to a higher tolerance to desiccation of larger individuals. Wave height had a significant negative relationship to the density of dying individuals, presumed to be due to the accretive nature of low-energy waves: when digging out, clams would be more prone to be carried upward and unable to return; while larger waves, breaking farther from the beach and with a stronger backwash, would prevent stranding in the uppermost areas. This ecological finding highlights the need for refined temporal studies on mortality events, in order to understand them more clearly. Last, the similar size structure of stranded clams and the living population indicated that the stranded individuals are from the intertidal or shallow subtidal zone, and reinforces the ecological and behavioral components of this process, which have important ecological and socioeconomic implications for the management of this population. PMID:26745804

  7. DIRECT MEASUREMENT TECHNIQUE FOR THE DETERMINING VENTILATION RATE IN THE DEPOSIT FEEDING CLAM, MACOMA NASUTA (BIVALVIA, TELLINACEAE)

    EPA Science Inventory

    An exposure chamber, the "clambox", was developed to measure ventilation rate, sediment processing rate, and efficiency of pollutant uptake byMacoma nasuta Conrad, a surface surface deposit-feeding clams. Clams, collected from Yaquina, Bay, Oregon, USA, were cemented into a hole ...

  8. High-resolution elemental records of Glycymeris glycymeris (Bivalvia) shells from the Iberian upwelling system: Ontogeny and environmental control

    NASA Astrophysics Data System (ADS)

    Freitas, Pedro; Richardson, Christopher; Chenery, Simon; Butler, Paul; Reynolds, David; Gaspar, Miguel; Scourse, James

    2015-04-01

    The great potential of bivalve shells as a high-resolution geochemical proxy archive of environmental conditions at the time of growth has been known for several decades. The elemental composition of bivalve shells has been studied with the purpose of reconstructing environmental conditions: e.g. seawater temperature (Sr and Mg), primary productivity (Li, Mn, Mo and Ba), redox conditions (Mn and Mo), terrigenous inputs (Li) and pollution (Cu, Zn, Cd and Pb). However, the interpretation of such records remains extremely challenging and complex, with processes affecting element incorporation in the shell (e.g. crystal fabrics, organic matrix, shell formation mechanisms and physiological processes) and the influence of more than one environmental parameter affecting elemental composition of bivalve shells. Nevertheless, bivalve shells remain an underused source of information on environmental conditions, with the potential to record high-resolution (sub-weekly to annually), multi-centennial time series of geochemical proxy data. The relatively long-lived bivalve (>100 years) Glycymeris glycymeris occurs in coastal shelf seas of Europe and North West Africa and is a valid annually resolved sclerochronological archive for palaeonvironmental reconstructions. The temporal framework provided by absolute annually dated shell material makes Glycymeris glycymeris a valuable, albeit unexplored, resource for investigating sub-annually resolved geochemical proxies. We present a first evaluation on the potential of Ba, P and U, the latter two elements rarely studied in bivalves, in Glycymeris glycymeris shells to record variations in the environmental conditions, respectively primary productivity, dissolved inorganic phosphorus and carbonate ion concentration/pH. High-resolution (31 to 77 samples per year) profiles of elemental/Ca ratios (E/Ca) over four years of growth (2001 to 2004) were obtained by LA-ICP-MS on two shells (13 and 16 years old) live-collected in 2010 at 30 m water depth on the Iberia upwelling system. In both shells, clear E/Ca annual cycles with significant higher-frequency variability (weekly to sub-monthly) were observed over the four years of growth analysed. However, E/Ca ratios and the amplitude of the annual E/Ca cycles were lower in the older shell and showed decreasing trends with age (ontogenetic effects). E/Ca ratios were age-detrended using statistical techniques derived from dendrochronology, resulting in similar and coherent profiles in both shells. It seems unlikely that enough variability in E/Ca ratios will be recorded in the shell after 15 to 20 years of age to allow the retrieval of an environmental signal by age-detrending E/Ca ratios. Detrended P/Ca, Ba/Ca and U/Ca in Glycymeris glycymeris shells showed coherent variations with coeval modelled and instrumental oceanographic series from the Iberia upwelling system that suggest a robust potential as an archive of environmental conditions in the first 15 to 20 years of growth. Nevertheless a robust calibration is required to distinguish between the influences of multiple environmental parameters. This study was financed and conducted in the frame of the Portuguese FCT GLYCY Project (contract PTDC/AAC-CLI/118003/2010).

  9. Numerical quantification of Perkinsus marinus in the American oyster Crassostrea virginica (Gmelin, 1791) (Mollusca: Bivalvia) by modern stereology.

    PubMed

    Remacha-Triviño, Antonio; Borsay-Horowitz, Doranne; Dungan, Christopher; Gual-Arnau, Ximo; Gómez-Leon, Javier; Villamil, Luisa; Gómez-Chiarri, Marta

    2008-02-01

    Species of Perkinsus are responsible for high mortalities of bivalve molluscs world-wide. Techniques to accurately estimate parasites in tissues are required to improve understanding of perkinsosis. This study quantifies the number and tissue distribution of Perkinsus marinus in Crassostrea virginica by modern stereology and immunohistochemistry. Mean total number of trophozoites were (mean +/- SE) 11.80 +/- 3.91 million and 11.55 +/- 3.88 million for the optical disector and optical fractionator methods, respectively. The mean empirical error between both stereological approaches was 3.8 +/- 1.0%. Trophozoites were detected intracellularly in the following tissues: intestine (30.1%), Leydig tissue (21.3%), hemocytes (14.9%), digestive gland (11.4%), gills (6.1%), connective tissues (5.7%), gonads (4.1%), palps (2.2%), muscle (1.9%), mantle connective (0.8%), pericardium (0.7%), mantle epithelium (0.1%), and heart (0.1%). The remaining 0.6% were found extracellularly. Percentages of trophozoite stages were (mean +/- SE): large, log-phase trophonts, i.e., signet rings, 97.0 +/- 1.2%; meronts, 2.0 +/- 0.9%; clusters of small, log-phase trophonts, i.e., merozoites, 1.0 +/- 0.5%. Levels of infection in hemocytes and Leydig tissue were representative of total parasite intensity. These techniques are a powerful tool to follow parasite distribution and invasion, and to further explore mechanisms of Perkinsus spp. pathogenesis in bivalves. PMID:18372631

  10. Evidence for accumulation of Synechococcus elongatus (Cyanobacteria: Cyanophyceae) in the tissues of the oyster Crassostrea gigas (Mollusca: Bivalvia).

    PubMed

    Avila-Poveda, Omar Hernando; Torres-Ariño, Alejandra; Girón-Cruz, Diego Ademir; Cuevas-Aguirre, Angel

    2014-10-01

    Cyanobacteria appear to have direct relations with mollusks in several aspects. This is the first time, distinguishing Gram-negative cyanoprokaryotic Synechococcus elongatus as bright yellow-gold autofluorescence by Lillie's and Hiss' staining methods on paraffin-embedded tissues of Crassostrea gigas. Three diets: cyanoprokaryotes, cyanoprokaryotes with microalgae, and only microalgae were evaluated. Cyanoprokaryotes were intact, densely bundled, and immersed in the cytosol of the digestive gland, connective tissue, mantle, and gonad of C. gigas, revealing an accumulation systemic without tissue damage observed by histology. Unexpectedly, cyanoprokaryotes were slightly most accumulated with microalgae diet by each of the tissues of the C. gigas than with any other diets. Cyanoprokaryotes tend to be in mean slightly higher in the digestive gland than in any other tissues respectively for each diet, although these values are closely similar to connective tissue. A possible order of exposure of the oyster tissues to accumulation of cyanoprokaryotes was digestive gland, connective tissue, mantle, and gonad. Thereby, the digestive gland could be the major target tissue for the accumulation. Our observations provide a valuable insight regarding the ability of cyanoprokaryotes to penetrate, spread, and remain inside the oyster tissues, suggesting for S. elongatus: (1) a pre-accumulation in oyster tissues from the natural environment, (2) a phagocytosis and/or endocytosis process rather than ingestion and extracellular digestion, (3) an apparent cellular division in the cytosol of oyster tissues, (4) an apparent inter-tissue movement, and (5) a possible endosymbiosis between C. gigas and S. elongatus. Hereby, it is possible that S. elongatus have a well-developed host-endobiont relationship with oysters, and thereby support future work toward a description of the escape and spreading mechanisms of S. elongatus inside the tissues of mollusks, and put forward questions as why it is there? and are the cells active or inactive? PMID:25109761

  11. THE INFLUENCE OF SALINITY ON THE HEAT-SHOCK PROTEIN RESPONSE OF POTAMOCORBULA AMURENSIS (BIVALVIA). (R826940)

    EPA Science Inventory

    Abstract

    For biomarkers to be useful in assessing anthropogenic impacts in field studies involving aquatic organisms, they should not be affected by naturally occurring changes in environmental parameters such as salinity. This is especially important in estuarine envi...

  12. Low Genetic Diversity and High Invasion Success of Corbicula fluminea (Bivalvia, Corbiculidae) (Müller, 1774) in Portugal.

    PubMed

    Gomes, Cidália; Sousa, Ronaldo; Mendes, Tito; Borges, Rui; Vilares, Pedro; Vasconcelos, Vitor; Guilhermino, Lúcia; Antunes, Agostinho

    2016-01-01

    The Asian clam, Corbicula fluminea, is an invasive alien species (IAS) originally from Asia that has spread worldwide causing major ecological and economic impacts in aquatic ecosystems. Here, we evaluated C. fluminea genetic (using COI mtDNA, CYTb mtDNA and 18S rDNA gene markers), morphometric and sperm morphology variation in Portuguese freshwater ecosystems. The COI marker revealed a single haplotype, which belongs to the Asian FW5 invasive lineage, suggesting a common origin for all the 13 Portuguese C. fluminea populations analysed. Morphometric analyses showed differences between the populations colonizing the North (with the exception of the Lima River) and the Centre/South ecosystems. The sperm morphology examination revealed the presence of biflagellate sperm, a distinctive character of the invasive androgenetic lineages. The low genetic variability of the Portuguese C. fluminea populations and the pattern of sperm morphology have been illuminating for understanding the demographic history of this invasive species. We hypothesize that these populations were derived from a unique introductory event of a Corbicula fluminea FW5 invasive androgenic lineage in the Tejo River, which subsequently dispersed to other Portuguese freshwater ecosystems. The C. fluminea asexual reproductive mode may have assisted these populations to become highly invasive despite the low genetic diversity. PMID:27391333

  13. Direct measurement technique for determining ventilation rate in the deposit-feeding clam Macoma nasuta (bivalvia, tellinaceae)

    SciTech Connect

    Specht, D.T.; Lee, H.

    1989-01-01

    An exposure chamber, the 'clambox', was developed to measure ventilation rate, sediment processing rate, and efficiency of pollutant uptake by Macoma nasuta, Conrad, a surface-deposit-feeding clam. Clams, collected from Yaquina Bay, Oregon, USA, were cemented into a hole in a piece of rubber dental dam so that the inhalant siphons were separated by a membrane. The dental dam was then clamped between two glass chambers. The inhalant and exhalant siphons were thus diirected into separate chambers of the device so that the amount of water or feces discharged into the exhalant camber provided direct measure ventilation rate and sediment processing rate, respectively. The short-term pattern was for ventilation to be intermittently interrupted, essentially ceasing for 12 to 120 min, followed by a short period of active ventilation and then a resumption of the normal rate.

  14. Some population parameters of Ruditapes philippinarum (Bivalvia, Veneridae) on the southern coast of the Marmara Sea, Turkey

    NASA Astrophysics Data System (ADS)

    Çolakoğlu, Serhat; Palaz, Mustafa

    2014-12-01

    Ruditapes philippinarum, a venerid clam, is a dominant species in the sandy and muddy areas in the coastal waters of the Marmara Sea. Intensive commercial harvesting of this species is conducted in these regions. We studied the population dynamics of R. philippinarum on the southern coast of the Marmara Sea (Bandırma). Samples were collected on a monthly basis between September 2012 and August 2013. Seasonal von Bertalanffy growth parameters using the length-frequency distribution of R. philippinarum were estimated at L ∞ = 67.50 mm and K = 0.33 year-1, and the seasonal oscillation in growth rate was 0.53. The slowest growth period was in January. The growth performance index and potential lifespan were 3.182 and 8.06 years, respectively. The growth relationship was confirmed to have a positive allometric pattern. The average total mortality rate was estimated to be 0.777 year-1, whereas the natural and fishing mortality rates were 0.539 and 0.238 year-1, respectively. The current exploitation rate of R. philippinarum was 0.306. The recruitment pattern peaked during June-August, and spawning occurred between May and August. The results of this study provide valuable information on the status of R. philippinarum stocks.

  15. Combined effects of temperature acclimation and cadmium exposure on mitochondrial function in eastern oysters Crassostrea virginica gmelin (Bivalvia: Ostreidae).

    PubMed

    Cherkasov, Anton S; Ringwood, Amy H; Sokolova, Inna M

    2006-09-01

    Cadmium and temperature have strong impacts on the metabolic physiology of aquatic organisms. To analyze the combined impact of these two stressors on aerobic capacity, effects of Cd exposure (50 microg/L) on mitochondrial function were studied in oysters (Crassostrea virginica) acclimated to 12 and 20 degrees C in winter and to 20 and 28 degrees C in fall. Cadmium exposure had different effects on mitochondrial bioenergetics of oysters depending on the acclimation temperature. In oysters acclimated to 12 degrees C, Cd exposure resulted in elevated intrinsic rates of mitochondrial oxidation, whereas at 28 degrees C, a rapid and pronounced decrease of mitochondrial oxidative capacity was found in Cd-exposed oysters. At the intermediate acclimation temperature (20 degrees C), effects of Cd exposure on intrinsic rates of mitochondrial oxidation were negligible. Degree of coupling significantly decreased in mitochondria from 28 degrees C-acclimated oysters but not in that from 12 degrees C- or 20 degrees C-acclimated oysters. Acclimation at elevated temperatures also increased sensitivity of oyster mitochondria to extramitochondrial Cd. Variation in mitochondrial membrane potential explained 41% of the observed variation in mitochondrial adenosine triphosphate synthesis and proton leak between different acclimation groups of oysters. Temperature-dependent sensitivity of metabolic physiology to Cd has significant implications for toxicity testing and for extrapolation of laboratory studies to field populations of aquatic poikilotherms, indicating the importance of taking into account the thermal regime of the environment. PMID:16986802

  16. Plasticity of symbiont acquisition throughout the life cycle of the shallow-water tropical lucinid Codakia orbiculata (Mollusca: Bivalvia).

    PubMed

    Gros, Olivier; Elisabeth, Nathalie H; Gustave, Sylvie D D; Caro, Audrey; Dubilier, Nicole

    2012-06-01

    In marine invertebrates that acquire their symbionts from the environment, these are generally only taken up during early developmental stages. In the symbiosis between lucinid clams and their intracellular sulfur-oxidizing bacteria, it has been shown that the juveniles acquire their symbionts from an environmental stock of free-living symbiont forms, but it is not known if adult clams are still competent to take up symbiotic bacteria from the environment. In this study, we investigated symbiont acquisition in adult specimens of the lucinid clam Codakia orbiculata, using transmission electron microscopy, fluorescence in situ hybridization, immunohistochemistry and PCR. We show here that adults that had no detectable symbionts after starvation in aquaria for 6 months, rapidly reacquired symbionts within days after being returned to their natural environments in the field. Control specimens that were starved and then exposed to seawater aquaria with sulfide did not reacquire symbionts. This indicates that the reacquisition of symbionts in the starved clams returned to the field was not caused by high division rates of a small pool of remaining symbionts that we were not able to detect with the methods used here. Immunohistochemistry with an antibody against actin, a protein involved in the phagocytosis of intracellular bacteria, showed that actin was expressed at the apical ends of the gill cells that took up symbionts, providing further evidence that the symbionts were acquired from the environment. Interestingly, actin expression was also observed in symbiont-containing cells of untreated lucinids freshly collected from the environment, indicating that symbiont acquisition from the environment occurs continuously in these clams throughout their lifetime. PMID:22672589

  17. Frequency, Magnitude, and Possible Causes of Stranding and Mass-Mortality Events of the Beach Clam Tivela mactroides (Bivalvia: Veneridae).

    PubMed

    Turra, Alexander; Pombo, Maíra; Petracco, Marcelo; Siegle, Eduardo; Fonseca, Mariana; Denadai, Márcia R

    2016-01-01

    Stranding combined with mass-mortality events of sandy-beach organisms is a frequent but little-understood phenomenon, which is generally studied based on discrete episodes. The frequency, magnitude, and possible causes of stranding and mass-mortality events of the trigonal clam Tivela mactroides were assessed based on censuses of stranded individuals, every four days from September 2007 through December 2008, in Caraguatatuba Bay, southeastern Brazil. Stranded clams were classified as dying (closed valves did not open when forced) or dead (closed valves were easily opened). Information on wave parameters and the living intertidal clam population was used to assess possible causes of stranding. This fine-scale monitoring showed that stranding occurred widely along the shore and year-round, with peaks interspersed with periods of low or no mortality. Dead clams showed higher mean density than dying individuals, but a lower mean shell length, attributed to a higher tolerance to desiccation of larger individuals. Wave height had a significant negative relationship to the density of dying individuals, presumed to be due to the accretive nature of low-energy waves: when digging out, clams would be more prone to be carried upward and unable to return; while larger waves, breaking farther from the beach and with a stronger backwash, would prevent stranding in the uppermost areas. This ecological finding highlights the need for refined temporal studies on mortality events, in order to understand them more clearly. Last, the similar size structure of stranded clams and the living population indicated that the stranded individuals are from the intertidal or shallow subtidal zone, and reinforces the ecological and behavioral components of this process, which have important ecological and socioeconomic implications for the management of this population. PMID:26745804

  18. A new genus and species of Thyasiridae (Mollusca, Bivalvia) from deep-water, Beaufort Sea, northern Alaska

    PubMed Central

    Valentich-Scott, Paul; Powell, Charles L.; II; Lorenson, Thomas D.; Edwards, Brian E.

    2014-01-01

    Abstract Bivalve mollusk shells were collected in 2350 m depth in the Beaufort Sea, Arctic Ocean off northern Alaska. Initial identification suggested the specimens were a member of the bivalve family Thyasiridae, but no known eastern Pacific or Arctic living or fossil thyasirid resembled these deep-water specimens. Comparisons were made with the type of the genera Maorithyas Fleming, 1950, Spinaxinus Oliver & Holmes, 2006, Axinus Sowerby, 1821, and Parathyasira Iredale, 1930. We determined the Beaufort Sea species represents a new genus, herein described as Wallerconcha. These specimens also represent a new species, herein named Wallerconcha sarae. These new taxa are compared with known modern and fossil genera and species of thyasirds. PMID:25589851

  19. In situ growth of Soletellina alba (Bivalvia: Psammobiidae) in response to detrital supply and mouth status in a seasonally-closed estuary

    NASA Astrophysics Data System (ADS)

    Matthews, Ty G.; Fairweather, Peter G.

    2008-06-01

    The supply of detritus is an important food source for many soft-sediment invertebrates, but its importance for their growth and condition is rarely, if ever, tested directly using manipulative field experiments. Therefore, we designed such a study to: (1) test the importance of fine particulate organic matter for the growth and condition of the infaunal bivalve Soletellina alba; (2) indirectly test the feeding mode of S. alba, which has been assumed to be a deposit feeder like other members of the same superfamily (Tellinoidea); (3) compare growth rates across two summers with contrasting patterns of estuary mouth opening/closing; and (4) compare the condition of individuals used in two field studies (i.e. present versus past) and a past laboratory study. Neither growth nor condition differed when organic content of the sediments was varied, which suggests that S. alba is either a suspension feeder or capable of switching modes of feeding. There was considerable interannual variation in growth with greater growth occurring during the summer with a longer period of mouth opening. This suggests that periods of mouth closure may reduce secondary production within seasonally-closed estuaries. Potential artefacts associated with laboratory trials were also identified, with laboratory bivalves exhibiting poorer condition than those used in two field trials. The present study provides no evidence that variable quantities and qualities of organic matter within the sediments influence the growth and condition of S. alba, but future studies should focus on food supplied via the water column when the estuary is open versus closed.

  20. Intra-specific variability in life-history traits of Anadara tuberculosa (Mollusca: Bivalvia) in the mangrove ecosystem of the Southern coast of Ecuador.

    PubMed

    Flores, Luis; Licandeo, Roberto; Cubillos, Luis A; Mora, Elba

    2014-06-01

    Anadara tuberculosa is one of the most important bivalves along the Western Pacific coast because of its commercial value. Nevertheless, the variability in growth, long-life span, natural mortality and reproductive parameters of this mangrove cockle has not yet been described. The aim of this study was to analyze these life-history traits in three areas of the Southern coast of Ecuador. Empirical and length-based methods were used to estimate these biological parameters. Body size data were collected from the commercial fishery between 2004 and 2011 in landing ports near to the Archipelago of Jambeli [Puerto Bolivar (PB), Puerto Jeli (PJ) and Puerto Hualtaco (PH)]. The von Bertalanffy growth parameters for combined sex were estimated between 70.87 to 93.45mm for L(infinity) and 0.22 to 0.80/year for k. The growth indices (PHI') ranged from 3.17 to 3.85, while the overall growth performance (OGP) ranged from 5.03 to 5.82. The mean of long-life span (t(max)), size and age at maturity (L50% and t50%) were estimated in 7.71 +/- 2.53 years, 39.13 +/- 2.24mm and 1.46 +/- 0.56 years for PB; 9.51 +/- 2.85 years, 37.78 +/- 1.95mm and 1.37 +/- 0.41 years for PJ and 5.81 +/- 2.11 years, 39.73 +/- 3.31mm and 0.94 +/- 0.41 years for PH. Natural mortality (M) ranged from 0.46 to 1.28/year. We concluded that significant intra-specific variation was observed in a temporal scale in PHI' and OGP indices as well as L50% and M. Therefore, temporal changes in these life-history traits should be taken into account when assessing the status of the mangrove cockle fishery. PMID:25102632

  1. Inter- and intra-specimen variability masks reliable temperature control on shell Mg/Ca ratios in laboratory- and field-cultured Mytilus edulis and Pecten maximus (bivalvia)

    NASA Astrophysics Data System (ADS)

    Freitas, P. S.; Clarke, L. J.; Kennedy, H. A.; Richardson, C. A.

    2008-09-01

    The Mg/Ca ratios of biogenic calcite is commonly seen as a valuable palaeo-proxy for reconstructing past ocean temperatures. The temperature dependence of Mg/Ca ratios in bivalve calcite has been the subject of contradictory observations. The palaeoceanographic use of a geochemical proxy is dependent on initial, rigorous calibration and validation of relationships between the proxy and the ambient environmental variable to be reconstructed. Shell Mg/Ca ratio data are reported for the calcite of two bivalve species, Mytilus edulis (common mussel) and Pecten maximus (king scallop), which were grown in laboratory culturing experiments at controlled and constant aquarium seawater temperatures over a range from ~10 to ~20°C. Furthermore, Mg/Ca ratio data of laboratory- and field-grown M. edulis specimens were compared. Only a weak, albeit significant, shell Mg/Ca ratio temperature relationship was observed in the two bivalve species: M. edulis (r2=0.37, p<0.001 for laboratory-cultured specimens and r2=0.50, p<0.001 for field-cultured specimens) and P. maximus (r2=0.21, p<0.001 for laboratory-cultured specimens only). In the two species, shell Mg/Ca ratios were not found to be controlled by shell growth rate or salinity. The Mg/Ca ratios in the shells exhibited a large degree of variability among and within species and individuals. The results suggest that the use of bivalve calcite Mg/Ca ratios as a temperature proxy is limited, at least in the species studied to date. Such limitations are most likely due to the presence of physiological effects on Mg incorporation in bivalve calcite. The utilization is further limited by the great variability both within and among shells of the same species that were precipitated under the same ambient conditions.

  2. Chaetogaster limnaei (annelida: oligochaeta) as a parasite of the zebra mussel Dreissena polymorpha, and the quagga mussel Dreissena bugensis (mollusca: bivalvia).

    PubMed

    Conn, D B; Ricciardi, A; Babapulle, M N; Klein, K A; Rosen, D A

    1996-01-01

    Dreissenid mussels, Dreissena polymorpha and D. bugensis, were found to be infected by the naidid oligochaete Chaetogaster limnaei at four sites in the St. Lawrence River. This is the first report of this species infecting dreissenids anywhere in the world. Most worms inhabited the mantle cavity, where they caused erosion of the mantle and gill epithelia as determined by histopathological examination. Others penetrated various tissues; one had invaded the ovary and was feeding on oocytes and ovarian tissues. Of 606 mussels examined, 166 (27.4%) harbored at least 1 C. limnaei. The prevalence varied between 1% and 80%, depending on the collection site and date. The worms were slightly but significantly more prevalent in D. bugensis than in D. polymorpha. The intensity ranged from 1 to 18 worms per infected host. Variations in prevalence and intensity were not related to the size or sex of the host, but the data did suggest some seasonality. PMID:8825436

  3. An attempt to extend the Habitat Harshness Hypothesis to tidal flats: A case study of Anomalocardia brasiliana (Bivalvia: Veneridae) reproductive biology

    NASA Astrophysics Data System (ADS)

    Corte, Guilherme Nascimento; Yokoyama, Leonardo Querobim; Amaral, A. Cecília Z.

    2014-10-01

    The Habitat Harshness Hypothesis (HHH) predicts that populations inhabiting the intertidal area of a dissipative beach should produce more gametes and have a longer reproductive cycle than those inhabiting an intermediate or reflective beach. This hypothesis was proposed for the exposed morphodynamic continuum between the reflective and dissipative states; however, no attempt has been made thus far to verify whether the HHH is valid for tidal flats. In this study, we analysed the reproductive cycle of Anomalocardia brasiliana in an intermediate beach and in a tidal flat and compared the results to determine whether the reproductive cycles of A. brasiliana were in agreement with the predictions of the HHH and to examine the possibility of extending this hypothesis to tidal flats. A continuous spawning season and synchrony between sexes were observed at both sites, although the reproductive effort was higher in the intermediate beach. The results of this first attempt did not support the extension of the HHH to tidal flats. It is possible that hypotheses that take into account only physical variables may not be the most adequate for describing environments with such a high species richness and high abundance as tidal flats. Nevertheless, other studies are necessary to confidently expand or refute the HHH with regard to tidal flats, and this topic should be considered as a priority in future investigations in sandy beach ecology.

  4. An annually-resolved palaeoenvironmental archive for the Eastern Boundary North Atlantic upwelling system: Sclerochronology of Glycymeris glycymeris (Bivalvia) shells from the Iberian shelf

    NASA Astrophysics Data System (ADS)

    Freitas, Pedro; Monteiro, Carlos; Butler, Paul; Reynolds, David; Richardson, Christopher; Gaspar, Miguel; Scourse, James

    2015-04-01

    The seasonally variable western Iberia upwelling system, albeit placed at a crucial climatic boundary position to record high frequency climate events, lacks well-dated high-resolution records of environmental variability. Bivalve shells provide robust high-resolution archives of oceanographic and climatic variability on timescales of decades to millennia. In particular, the North Atlantic Ocean region has recently seen several noteworthy sclerochronological and geochemical reconstructions based on bivalve shells (mainly Arctica islandica) of high frequency oceanographic and climatic conditions during the last millennium. However, due to the absence of Arctica islandica and similarly long-lived bivalves, sclerochronological palaeoenvironmental studies of southern European coastal shelf seas are scarce. In particular, none of these studies focus on reconstructing the variability of an eastern boundary upwelling system. The relatively long-lived bivalve (>100 years) Glycymeris glycymeris occurs in European and North West African coastal shelf seas and provides a valid annually resolved archive of environmental conditions during growth. Annual growth increment width series from living G. glycymeris shells, collected in 2014 on the western Iberian continental shelf (ca. 35 m water depth), were used to construct a statistically robust, ca. 70-year long absolutely-dated chronology. Sub-annually resolved (11 to 22 samples per year) oxygen stable isotope (δ18Oshell) data covering three years of shell growth, together with the direct evaluation of the time of growth mark deposition in shells collected during the autumn and winter months, were used to constrain the season of growth and to evaluate the seasonal bias of the sea-surface temperature signal preserved in the δ18Oshelldata. The growth increment width and δ18Oshell series, once robustly calibrated against modelled and instrumental oceanographic and climatic series, potentially provide novel insights into the variability of the western Iberia upwelling system and the associated mechanisms. This study was financed and conducted in the frame of the Portuguese Fundação para a Ciência e Tecnologia (FCT) GLYCY Project (contract PTDC/AAC-CLI/118003/2010).

  5. Morphological and Genetic Diversity of the Wood-Boring Xylophaga (Mollusca, Bivalvia): New Species and Records from Deep-Sea Iberian Canyons

    PubMed Central

    Romano, Chiara; Voight, Janet Ruth; Pérez-Portela, Rocío; Martin, Daniel

    2014-01-01

    Deep-sea bivalves of the Xylophagaidae, a poorly known group, are obligate wood-borers. Deployment of wood in three submarine canyons off the Iberian coast, the Blanes and La Fonera Canyons (Mediterranean Sea) and the Avilés Canyon (Cantabric Sea, Bay of Biscay), lead to the discovery of four xylophagaid species in our samples. Xylophaga dorsalis (the dominant species), X. atlantica, X. cf. anselli and the new species X. brava, were identified on the basis of morphological data, and supported by a phylogenetic reconstruction based on the nuclear genes 18S rDNA and 28S rDNA and including several genus of Xylophagaidae. Genetic divergence between species of Xylophaga varied between genes, ranging from 0.5 to 4.0% for the 18SrDNA and from 4.1 to 16.6% for the 28SrDNA. Xylophaga brava sp. nov. appeared to be restricted to the Mediterranean and morphologically resembled the closely related X. cf. anselli from the Cantabrian Sea. However, they clearly diverged in two well-supported clades. Low levels of intraspecific variability and higher interspecific divergence between species also supported the existence of these two different species. Morphologically they differ in the number of cirri at the siphon openings, in the shape of the posterior shell and in the size of prodissoconch II. The new species is characterized by having weak, poorly mineralized mesoplax and siphons united throughout, covered by a periostracal, non-calcified tube; distinct proximal and distal siphons, the former translucent and soft, the latter muscular, with concentric rings. Xylophaga atlantica, previously known only from the western Atlantic, is reported for the first time in the Mediterranean Sea. Whether its presence in the Mediterranean indicates its natural distribution or reflects its recent introduction is unknown. Although xylophagaids have been previously reported to recruit heavily to wood deposited on the seabed, these four species colonized wood suspended 30 m above the seafloor. PMID:25061913

  6. Where’s Waldo? A new commensal species, Waldo arthuri (Mollusca, Bivalvia, Galeommatidae), from the Northeastern Pacific Ocean

    PubMed Central

    Valentich-Scott, Paul; Ó Foighil, Diarmaid; Li, Jingchun

    2013-01-01

    Abstract A galeommatid bivalve mollusk, representing a new species, is described from off the coasts of California and Vancouver Island, British Columbia. The new bivalve has a commensal relationship with the heart urchin, Brisaster latifrons. It has been observed crawling between the oral spines of this urchin, frequently near the peristome. The bivalve has been recorded from 80 (Vancouver Island) to 444 (southern California) meters depth, in muddy sediments. In common with other galeommatoideans, the new species broods its young; however it differs from the large majority of commensal members in lacking planktotrophic larval development. Waldo arthuri, new species, has multiple morphological, ecological and developmental similarities to other members of the genus Waldo Nicol, 1966, from the southern Atlantic and Antarctic Oceans. This is most pronounced for the Argentine species, Waldo paucitentaculatus Zelaya & Ituarte, 2013, Waldo arthuri’s sister speciesin nuclear and mitochondrial gene trees. Despite this close relationship, Waldo arthuri is phylogentically distinct and possesses several hinge, shell sculpture, foot, and mantle tentacle characteristics that merit its description as new. PMID:23878515

  7. Genetic Population Structure of Macridiscus multifarius (Mollusca: Bivalvia) on the Basis of Mitochondrial Markers: Strong Population Structure in a Species with a Short Planktonic Larval Stage

    PubMed Central

    Ye, Ying Ying; Wu, Chang Wen; Li, Ji Ji

    2015-01-01

    The clam Macridiscus multifarius with a planktonic larval stage of about 10 days is an ecologically and economically important species in the coastal regions of China. In this study, 3 mt-DNA markers (COI, 12S rRNA, and ND1) were used to investigate the population structure and demography of wild M. multifarius populations in 3 coastal localities of the East China Sea (ZS and ZP populations) and Beibu Gulf in the South China Sea (BH population). Sequences of 685 bp in COI, 350 bp in 12S rRNA, and 496 bp in ND1 were determined. High level and significant FST values were obtained among the different localities on the basis of either COI (FST = 0.100–0.444, p < 0.05) or 12S rRNA (FST = 0.199–0.742, p < 0.05) gene, indicating a high degree of genetic differentiation among the populations. FST values were significant but weak for the ND1 gene because it is highly conservative. The median-joining network suggested an obvious genetic differentiation between ZS and BH populations, and the finding is consistent with the results of our demographic analyses using the unweighted pair group method with arithmetic mean. Our study unraveled the extant population genetic structure of M. multifarius and explained the strong population structure of a species with a short planktonic larval stage species; this information could be useful for fishery management measures, including artificial breeding and conservation. PMID:26720602

  8. Genetic Population Structure of Macridiscus multifarius (Mollusca: Bivalvia) on the Basis of Mitochondrial Markers: Strong Population Structure in a Species with a Short Planktonic Larval Stage.

    PubMed

    Ye, Ying Ying; Wu, Chang Wen; Li, Ji Ji

    2015-01-01

    The clam Macridiscus multifarius with a planktonic larval stage of about 10 days is an ecologically and economically important species in the coastal regions of China. In this study, 3 mt-DNA markers (COI, 12S rRNA, and ND1) were used to investigate the population structure and demography of wild M. multifarius populations in 3 coastal localities of the East China Sea (ZS and ZP populations) and Beibu Gulf in the South China Sea (BH population). Sequences of 685 bp in COI, 350 bp in 12S rRNA, and 496 bp in ND1 were determined. High level and significant FST values were obtained among the different localities on the basis of either COI (FST = 0.100-0.444, p < 0.05) or 12S rRNA (FST = 0.199-0.742, p < 0.05) gene, indicating a high degree of genetic differentiation among the populations. FST values were significant but weak for the ND1 gene because it is highly conservative. The median-joining network suggested an obvious genetic differentiation between ZS and BH populations, and the finding is consistent with the results of our demographic analyses using the unweighted pair group method with arithmetic mean. Our study unraveled the extant population genetic structure of M. multifarius and explained the strong population structure of a species with a short planktonic larval stage species; this information could be useful for fishery management measures, including artificial breeding and conservation. PMID:26720602

  9. Extensive Variation in Intracellular Symbiont Community Composition among Members of a Single Population of the Wood-Boring Bivalve Lyrodus pedicellatus (Bivalvia: Teredinidae)

    PubMed Central

    Luyten, Yvette A.; Thompson, Janelle R.; Morrill, Wendy; Polz, Martin F.; Distel, Daniel L.

    2006-01-01

    Shipworms (wood-boring bivalves of the family Teredinidae) harbor in their gills intracellular bacterial symbionts thought to produce enzymes that enable the host to consume cellulose as its primary carbon source. Recently, it was demonstrated that multiple genetically distinct symbiont populations coexist within one shipworm species, Lyrodus pedicellatus. Here we explore the extent to which symbiont communities vary among individuals of this species by quantitatively examining the diversity, abundance, and pattern of occurrence of symbiont ribotypes (unique 16S rRNA sequence types) among specimens drawn from a single laboratory-reared population. A total of 18 ribotypes were identified in two clone libraries generated from gill tissue of (i) a single specimen and (ii) four pooled specimens. Phylogenetic analysis assigned all of the ribotypes to a unique clade within the γ subgroup of proteobacteria which contained at least five well-supported internal clades (phylotypes). By competitive quantitative PCR and constant denaturant capillary electrophoresis, we estimated the number and abundance of symbiont phylotypes in gill samples of 13 individual shipworm specimens. Phylotype composition varied greatly; however, in all specimens the numerically dominant symbiont belonged to one of two nearly mutually exclusive phylotypes, each of which was detected with similar frequencies among specimens. A third phylotype, containing the culturable symbiont Teredinibacter turnerae, was identified in nearly all specimens, and two additional phylotypes were observed more sporadically. Such extensive variation in ribotype and phylotype composition among host specimens adds to a growing body of evidence that microbial endosymbiont populations may be both complex and dynamic and suggests that such genetic variation should be evaluated with regard to physiological and ecological differentiation. PMID:16391072

  10. New threats of an old enemy: the distribution of the shipworm Teredo navalis L. (Bivalvia: Teredinidae) related to climate change in the Port of Rotterdam area, the Netherlands.

    PubMed

    Paalvast, Peter; van der Velde, Gerard

    2011-08-01

    The effects of four climate change scenarios for the Netherlands on the distribution of the shipworm upstream of the Rhine-Meuse estuary are described. Global warming will cause dry and warmer summers and decreased river discharges. This will extend the salinity gradient upstream in summer and fall and may lead to attacks on wooden structures by the shipworm. Scenarios including one or two degree temperature increases by 2050 compared to 1990 with a weak change in the air circulation over Europe will lead to an increased chance of shipworm damage upstream from once in 36 years to once in 27 or 22 years, respectively; however, under a strong change in air circulation, the chance of shipworm damage increases to once in 6 or 3 years, respectively. The upstream expansion of the distribution of the shipworm will also be manifested in other northwest European estuaries and will be even stronger in southern Europe. PMID:21641620

  11. Comparison of the soluble organic matrices of healthy and diseased shells of Pinctada margaritifera (L.) and Pecten maximus L. (Mollusca, Bivalvia).

    PubMed

    Dauphin, Y

    2000-07-01

    Pinctada margaritifera and Pecten maximus are among the mollusks of commercial value. Both are known to show abnormal calcification processes that strongly increase the mortality rate. Several parameters of the soluble organic matrices extracted from the shells of P. margaritifera and P. maximus are analyzed: bulk composition, molecular weights, and acidity. The composition of the matrices of healthy and diseased shells were compared, showing that the protein and the sugar contents are variously modified. Differences between healthy and diseased shells are dissimilar in the two species. This is in accordance with the previously described macroscopic and microscopic alterations (red color, numerous brown membranes). This study does not allow identification the origin of the disease, but provides new insights on the role of sugars in biomineralization processes. PMID:10963403

  12. Molecular identification of the economically important freshwater mussels (Mollusca-Bivalvia-Unionoida) of Thailand: developing species-specific markers from AFLPs.

    PubMed

    Vannarattanarat, S; Zieritz, A; Kanchanaketu, T; Kovitvadhi, U; Kovitvadhi, S; Hongtrakul, V

    2014-04-01

    Shells of certain freshwater mussel (Unionoida) species are highly demanded and serve as raw material for a range of decorative and pharmaceutical products. In Thailand, most animals for this purpose are currently harvested from wild populations, with unionoid culture still being in its infancy. Whilst reliable species identification is a prerequisite for developing a large-scale industry, identification by morphological means is hampered by extensive phenotypic plasticity and poor knowledge of species delimitations. To facilitate alternative molecular identification, we developed species-specific markers for the three Thai unionoids with considerable economic potential (CEP): that is, Chamberlainia hainesiana, Hyriopsis desowitzi and Hyriopsis myersiana. For this purpose, amplified fragment length polymorphism (AFLP) fingerprints using 24 specific primer pairs were generated for eight samples of each CEP species and four samples of the closely related, non-CEP species Contradens contradens. Cloning and sequencing of 13 CEP species-specific AFLP bands revealed fragment collision at three occasions. In total, 16 species-specific primer pairs were designed and tested on 92 Thai specimens spanning seven species and four genera. Thereby, specificity of (1) three primers to C. hainesiana, (2) one primer to H. desowitzi + Hyriopsis bialata, (3) one primer to H. myersiana + H. bialata and (4) four primers to all three Hyriopsis species tested was confirmed. Respective multiplex PCR protocols are provided. The developed primers enable cheap, quick and reliable identification of the Thai CEP species by one to three PCRs and offer a tool for a range of additional applications within mussel culture and ecological and evolutionary research on these important organisms. PMID:24313464

  13. Lucinoma kazani n. sp. (Mollusca: Bivalvia): evidence of a living benthic community associated with a cold seep in the Eastern Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Salas, C.; Woodside, J.

    2002-06-01

    Lucinoma kazani, a new deep-water species of Lucinidae from the Eastern Mediterranean Basin, is described and illustrated. The material was collected in the Anaximander Mountains, between Rhodes and Cyprus, Eastern Mediterranean. The first living specimens were collected during the Dutch ANAXIPROBE project in the Kazan volcano, at a depth of 1709 m. Later, during the MEDINAUT programme, both living specimens and shells were collected from several mud volcanoes at different depths in the Anaximander Mountains. This bivalve holds symbionts in the ctenidia, as do all previously studied Lucinidae. The type of habitat of this new species is gas-saturated mud, with high levels of methane, which diffuses upwards into a low-oxygen deep-water. Therefore, we consider this as evidence of a living cold seep community in the Eastern Mediterranean Sea.

  14. [Lipid and fatty acid profile of Perna viridis, green mussel (Mollusca: Bivalvia) in different areas of the Eastern Venezuela and the West Coast of Trinidad].

    PubMed

    Koftayan, Tamar; Milano, Jahiro; D'Armas, Haydelba; Salazar, Gabriel

    2011-03-01

    The species Perna viridis is a highly consumed species, which fast growth makes it an interesting aquaculture alternative for Venezuelan and Trinidad coasts. With the aim to contribute with its nutritional value information, this study analyzed lipid and fatty acid contents from samples taken in five locations from Eastern Venezuela and three from Trinidad West Coast. Total lipids were extracted and quantified, from a pooled sample of 100 organisms per location, by standard gravimetric methods, and their identification and quantification was done by TLC/FID (Iatroscan system). Furthermore, the esterified fatty acids of total lipid, phospholipids and triacylglycerols were identified and quantified by gas chromatography. Eastern Venezuela samples from Los Cedros, La Brea and Chaguaramas showed the highest total lipid values of 7.92, 7.74 and 7.53, respectively, and the minimum values were obtained for La Restinga (6.08%). Among lipid composition, Chacopata samples showed the lowest phospholipid concentration (48.86%) and the maximum values for cholesterol (38.87%) and triacylglycerols (12.26%); besides, La Esmeralda and Rio Caribe samples exhibited maximum phospholipids (88.71 and 84.93 respectively) and minimum cholesterol (6.50 and 4.42%) concentrations. Saturated fatty acids represented between 15.04% and 65.55% within total lipid extracts, with maximum and minimum values for La Esmeralda and Chacopata, respectively. Polyunsaturated results resulted between 7.80 and 37.18%, with higher values in La Brea and lower values in La Esmeralda. For phospholipids, saturated fatty acids concentrations varied between 38.81 and 48.68% for Chaguaramas and Chacopata samples, respectively. In the case of polyunsaturated fatty acids, these varied between non detected and 34.51%, with high concentrations in Los Cedros (27.97%) and Chaguaramas (34.51%) samples. For the triacylglycerols, the saturated fatty acids composition oscillated between 14.27 and 53.80% with low concentrations for Chacopata and high concentration for La Restinga; the polyunsaturated fatty acids were between 4.66 and 35.55% with lower values for Chacopata and higher values for Chaguaramas samples. P. viridis is recommended for human being consumption, according to the high content of unsaturated fatty acids found for this species. PMID:21516644

  15. Reproductive traits of the symbiotic pea crab Austinotheres angelicus (Crustacea, Pinnotheridae) living in Saccostrea palmula (Bivalvia, Ostreidae), Pacific coast of Costa Rica

    PubMed Central

    Salas-Moya, Carolina; Mena, Sebastián; Wehrtmann, Ingo S.

    2014-01-01

    Abstract Pea crabs of the family Pinnotheridae exhibit a symbiotic life style and live associated with a variety of different marine organisms, especially bivalves. Despite the fact that pea crabs can cause serious problems in bivalve aquaculture, the available information about the ecology of these crabs from Central America is extremely limited. Therefore, the present study aimed to describe different reproductive features of the pinnotherid crab Austinotheres angelicus associated with the oyster Saccostrea palmula in the Golfo de Nicoya, Pacific coast of Costa Rica. Monthly sampling was conducted from April to December 2012. Average carapace width (CW) of the 47 analyzed ovigerous females was 7.62 mm. The species produced on average 2677 ± 1754 recently -extruded embryos with an average volume of 0.020 ± 0.003 mm3; embryo volume increased during embryogenesis by 21%, but did not vary significantly between developmental stages. Brood mass volume varied greatly (between 11.7 and 236.7 mm3), and increased significantly with female CW. Females invested on average 76.7% (minimum: 21.7%; maximum: 162.8%) of their body weight in brood production, which confirms a substantially higher energy allocation for embryo production in pinnotherid crabs compared to free-living decapods. PMID:25561840

  16. Use of sodium dodecyl sulfate and zinc sulfate as reference substances for toxicity tests with the mussel Perna perna (Linnaeus, 1758) (Mollusca: Bivalvia).

    PubMed

    Jorge, R A D L V C; Moreira, G S

    2005-06-01

    Effects of anthropogenic pollution have been observed at different trophic levels in the oceans, and toxicity tests constitute one way of monitoring these alterations. The present assay proposes the use of two reference substances, sodium dodecyl sulfate (SDS) and zinc sulfate, for Perna perna larvae. This common mussel on the Brazilian coast is used as a bioindicator and is of economic interest. The chronic static embryo-larval test of short duration (48 h) was employed to determine the NOEC, LOEC, and IC50 for SDS and zinc sulfate, as well as the coefficient of variation. Salinity, pH and un-ionized ammonia (NH3) and dissolved oxygen (DO) concentrations were measured to monitor water quality. The results demonstrated that the main alterations in veliger larvae are the development of only one shell, protruded mantle, malformed shell, formation of only part of a valve, clipped edges, uneven sizes and presence of a concave or convex hinge. NOEC values were lower than 0.25 mg L(-1) for zinc sulfate and 0.68 mg L(-1) for SDS. The coefficient of variation was 17.63% and 2.50% for zinc sulfate and SDS, respectively. PMID:15883100

  17. Prevalence of a protozoan parasite Cristigera sp. (Ciliophora:Ciliatea) from edible oysters (Mollusca:Bivalvia) of Sundarbans, West Bengal, India.

    PubMed

    Biswas, Tanima; Bandyopadhyay, Probir Kumar

    2014-09-01

    The coastal region of West Bengal is bestowed with a wide range of natural forest and aquatic resources. The estuarine complex is a culmination of the interaction of land, sea and freshwater. It offers diverse specialised habitats such as mangroves, non vegetated mudflats, inter tidal zones and reclaimed areas. Such areas are home to a number of terrestrial, freshwater and marine communities. Edible oyster resources in these regions are Crassostrea gryphoides and Saccostrea cucullata, which are the keystone species found in the intertidal zone and can tolerate huge variation of salinity. These are used as food by local people and marketed to earn cash. The population of this species has been declined due to parasitic infection and pollution. There are many protozoan parasites which infect these oysters causing diseases. During survey period, a protozoan parasite of the genus Cristigera have been observed only from the edible oyster Crassostrea gryphoides collected from Kaikhali and Frasergunj among three selected sites namely Kaikhali, Frasergunj and Digha of West Bengal mainly during monsoon and post-monsoon season. Considering such rare and specific prevalence of Cristigera sp, it may be considered as potential bio-indicator. PMID:25035589

  18. Molecular resolution of the family Dreissenidae (Mollusca: Bivalvia) with emphasis on Ponto-Caspian species, including first report of Mytilopsis leucophaeata in the Black Sea basin.

    PubMed

    Therriault, Thomas W; Docker, Margaret F; Orlova, Marina I; Heath, Daniel D; MacIsaac, Hugh J

    2004-03-01

    Considerable uncertainty exists in determination of the phylogeny among extant members of the Dreissenidae, especially those inhabiting the Ponto-Caspian basin, as multiple systematic revisions based on morphological characteristics have failed to resolve relationships within this group of bivalves. In this study we use DNA sequence analyses of two mitochondrial gene fragments, 16S rRNA and cytochrome c oxidase subunit I (COI), to determine phylogenetic relationships among Dreissena rostriformis, D. bugensis, D. polymorpha, D. stankovici, Congeria kusceri, and Mytilopsis leucophaeata. Dreissena stankovici was determined to represent a sister taxa to D. polymorpha and both are more closely related to other extant Dreissena species than Congeria or Mytilopsis. Sequence divergence between D. rostriformis and D. bugensis was relatively low (0.3-0.4%), suggesting that these two taxa constitute a single species. However, environmental differences suggest two races of D. rostriformis, a brackish water race (rostriformis) and a freshwater race (bugensis). Spread of bugensis-type individuals into habitats in the Caspian Sea that are occupied by rostriformis-type individuals may create novel hybridization opportunities. Species-specific molecular markers also were developed in this study since significant intraspecific variation in morphological features complicates dreissenid identification. Using two gene fragments (nuclear 28S and 16S), we identified restriction fragment length polymorphisms (RFLPs) that distinguish among D. rostriformis/bugensis, D. polymorpha, and D. stankovici and revealed the presence of a cryptic invader to the Black Sea basin, Mytilopsis leucophaeata. This is the first report of this North American native in southern Europe. PMID:15012933

  19. The Complete Maternally and Paternally Inherited Mitochondrial Genomes of the Endangered Freshwater Mussel Solenaia carinatus (Bivalvia: Unionidae) and Implications for Unionidae Taxonomy

    PubMed Central

    Huang, Xiao-Chen; Rong, Jun; Liu, Yong; Zhang, Ming-Hua; Wan, Yuan; Ouyang, Shan; Zhou, Chun-Hua; Wu, Xiao-Ping

    2013-01-01

    Doubly uniparental inheritance (DUI) is an exception to the typical maternal inheritance of mitochondrial (mt) DNA in Metazoa, and found only in some bivalves. In species with DUI, there are two highly divergent gender-associated mt genomes: maternal (F) and paternal (M), which transmit independently and show different tissue localization. Solenaia carinatus is an endangered freshwater mussel species exclusive to Poyang Lake basin, China. Anthropogenic events in the watershed greatly threaten the survival of this species. Nevertheless, the taxonomy of S. carinatus based on shell morphology is confusing, and the subfamilial placement of the genus Solenaia remains unclear. In order to clarify the taxonomic status and discuss the phylogenetic implications of family Unionidae, the entire F and M mt genomes of S. carinatus were sequenced and compared with the mt genomes of diverse freshwater mussel species. The complete F and M mt genomes of S. carinatus are 16716 bp and 17102 bp in size, respectively. The F and M mt genomes of S. carinatus diverge by about 40% in nucleotide sequence and 48% in amino acid sequence. Compared to F counterparts, the M genome shows a more compact structure. Different gene arrangements are found in these two gender-associated mt genomes. Among these, the F genome cox2-rrnS gene order is considered to be a genome-level synapomorphy for female lineage of the subfamily Gonideinae. From maternal and paternal mtDNA perspectives, the phylogenetic analyses of Unionoida indicate that S. carinatus belongs to Gonideinae. The F and M clades in freshwater mussels are reciprocal monophyly. The phylogenetic trees advocate the classification of sampled Unionidae species into four subfamilies: Gonideinae, Ambleminae, Anodontinae, and Unioninae, which is supported by the morphological characteristics of glochidia. PMID:24358356

  20. Incongruence between mtDNA and nuclear data in the freshwater mussel genus Cyprogenia (Bivalvia: Unionidae) and its impact on species delineation.

    PubMed

    Chong, Jer Pin; Harris, John L; Roe, Kevin J

    2016-04-01

    Accurately identifying species is a crucial step for developing conservation strategies for freshwater mussels, one of the most imperiled faunas in North America. This study uses genetic data to re-examine species delineation in the genus Cyprogenia. Historically, Cyprogenia found west of the Mississippi River have been ascribed to Cyprogenia aberti (Conrad 1850), and those east of the Mississippi River were classified as Cyprogenia stegaria (Rafinesque 1820). Previous studies using mitochondrial DNA sequences indicated that C. aberti and C. stegaria were not reciprocally monophyletic groups, suggesting the need for systematic revision. We generated a novel dataset consisting of 10 microsatellite loci and combined it with sequence data from the mitochondrial ND1 gene for 223 Cyprogenia specimens. Bayesian analysis of the ND1 nucleotide sequences identified two divergent clades that differ by 15.9%. Members of these two clades occur sympatrically across most sampling locations. In contrast, microsatellite genotypes support recognition of three allopatric clusters defined by major hydrologic basins. The divergent mitochondrial lineages are highly correlated with the color of the conglutinate lures used by mussels to attract and infest host fishes, and tests for selection at the ND1 locus were positive. We infer that the incongruence between mtDNA and microsatellite data in Cyprogenia may be the result of a combination of incomplete lineage sorting and balancing selection on lure color. Our results provide further evidence that mitochondrial markers are not always neutral with respect to selection, and highlight the potential problems of relying on a single-locus-marker for delineating species. PMID:27066233

  1. Genetic relationships among freshwater mussel species from fifteen Amazonian rivers and inferences on the evolution of the Hyriidae (Mollusca: Bivalvia: Unionida).

    PubMed

    Santos-Neto, Guilherme da Cruz; Beasley, Colin Robert; Schneider, Horacio; Pimpão, Daniel Mansur; Hoeh, Walter Randolph; Simone, Luiz Ricardo Lopes de; Tagliaro, Claudia Helena

    2016-07-01

    The current phylogenetic framework for the South American Hyriidae is solely based on morphological data. However, freshwater bivalve morphology is highly variable due to both genetic and environmental factors. The present study used both mitochondrial (COI and 16S) and nuclear (18S-ITS1) sequences in molecular phylogenetic analyses of nine Neotropical species of Hyriidae, collected from 15 South American rivers, and sequences of hyriids from Australia and New Zealand obtained from GenBank. The present molecular findings support traditional taxonomic proposals, based on morphology, for the South American subfamily Hyriinae, currently divided in three tribes: Hyriini, Castaliini and Rhipidodontini. Phylogenetic trees based on COI nucleotide sequences revealed at least four geographical groups of Castalia ambigua: northeast Amazon (Piriá, Tocantins and Caeté rivers), central Amazon, including C. quadrata (Amazon and Aripuanã rivers), north (Trombetas river), and C. ambigua from Peru. Genetic distances suggest that some specimens may be cryptic species. Among the Hyriini, a total evidence data set generated phylogenetic trees indicating that Paxyodon syrmatophorus and Prisodon obliquus are more closely related, followed by Triplodon corrugatus. The molecular clock, based on COI, agreed with the fossil record of Neotropical hyriids. The ancestor of both Australasian and Neotropical Hyriidae is estimated to have lived around 225million years ago. PMID:27071805

  2. Planktivory by alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax) on microcrustacean zooplankton and dreissenid (Bivalvia: Dreissenidae) veligers in southern Lake Ontario

    USGS Publications Warehouse

    Mills, Edward L.; O'Gorman, Robert; Roseman, Edward F.; Adams, Connie; Owens, Randall W.

    1995-01-01

    The objective of this study was to describe the diet of young-of-the-year and adult alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax) in nearshore waters coincident with the colonization of Lake Ontario by Dreissena. Laboratory experiments and field observations indicated that alewife and rainbow smelt consumed dreissenid veligers and that the veligers remained intact and identifiable in the digestive tract for several hours. Dreissenid larvae were found in field-caught alewife and rainbow smelt in August 1992, even though veliger densities were low (<0.1/L). Zooplankton dominated the diet of all fish and veliger larvae were <0.1% of the biomass of prey eaten by these fish. Density of veligers and the distribution of settled dreissenids declined from west to east along the south shore of Lake Ontario. Based on veliger consumption rates we measured and the abundance of veligers and planktivores, we conclude that planktivory by alewife and smelt in the nearshore waters of Lake Ontario did not substantially reduce the number of veligers during 1991–1993. However, our results indicate that if the density of veligers in Lake Ontario decreases, and if planktivores remain abundant, planktivory on veliger populations could be significant.

  3. Large Vesicomyidae (Mollusca: Bivalvia) from cold seeps in the Gulf of Guinea off the coasts of Gabon, Congo and northern Angola

    NASA Astrophysics Data System (ADS)

    von Cosel, Rudo; Olu, Karine

    2009-12-01

    Two new genera and three new species of large Vesicomyidae are described from cold-seep sites on pockmarks and other sulfide-rich environments in the Gulf of Guinea (tropical east Atlantic) off Gabon, Congo (Brazzaville) and northern Angola, from 500 to 4000 m depth: " Calyptogena" (s.l.) regab n. sp., Wareniconcha (n.g.) guineensis (Thiele and Jaeckel 1931), Elenaconcha guiness n.g. n. sp., and Isorropodon atalantae n. sp. For two other species already taken by the R/V Valdivia in 1898, Calyptogena valdiviae (Thiele and Jaeckel 1931) and Isorropodon striatum (Thiele and Jaeckel 1931) new localities were discovered, and the species are rediscussed. E. guiness n.g. n.sp. is also recorded from off Banc d'Arguin, Mauritania, collected by commercial fishing vessels. The vesicomyid species here treated were encountered in different depth ranges along the Gabon-Congo-Angola margin, between 500 and 4000 m depth, and it was found that, in comparison with the dredge samples taken by the Valdivia expedition off southern Cameroon and off Rio de Oro (both at 2500 m), the same species occur in other depth ranges, in some cases with a vertical difference of more than 1000 m. .That means that the species are not confined to a given depth thought being typical for them and that the characteristics of the biotope are likely to play a major role in the distribution of the vesicomyids associated to cold seeps or other reduced environments along the West African margin.

  4. A holistic approach to taxonomic evaluation of two closely related endangered freshwater mussel species, the oyster mussel Epioblasma capsaeformis and tan riffleshell Epioblasma florentina walkeri (Bivalvia: Unionidae)

    USGS Publications Warehouse

    Jones, J.W.; Neves, R.J.; Ahlstedt, S.A.; Hallerman, E.M.

    2006-01-01

    Species in the genus Epioblasma have specialized life history requirements and represent the most endangered genus of freshwater mussels (Unionidae) in the world. A genetic characterization of extant populations of the oyster mussel E. capsaeformis and tan riffleshell E. florentina walkeri sensu late was conducted to assess taxonomic validity and to resolve conservation issues for recovery planning. These mussel species exhibit pronounced phenotypic variation, but were difficult to characterize phylogenetically using DNA sequences. Monophyletic lineages, congruent with phenotypic variation among species, were obtained only after extensive analysis of combined mitochondrial (1396 bp of 16S, cytochrome-b, and ND1) and nuclear (515 bp of ITS-1) DNA sequences. In contrast, analysis of variation at 10 hypervariable DNA microsatellite loci showed moderately to highly diverged populations based on FST and R ST values, which ranged from 0.12 to 0.39 and 0.15 to 0.71, respectively. Quantitative variation between species was observed in fish-host specificity, with transformation success of glochidia of E. capsaeformis significantly greater (P<0.05) on greenside darter Etheostoma blennioides, and that of E. f. walkeri significantly greater (P<0.05) on fantail darter Etheostoma flabellare. Lengths of glochidia differed significantly (P<0.001) among species and populations, with mean sizes ranging from 241 to 272 ??m. The texture and colour of the mantle-pad of E. capsaeformis sensu stricto is smooth and bluish-white, whereas that of E. f. walkeri is pustuled and brown, with tan mottling. Based on extensive molecular, morphological and life history data, the population of E. capsaeformis from the Duck River, Tennessee, USA is proposed as a separate species, and the population of E. f. walkeri from Indian Creek, upper Clinch River, Virginia, USA is proposed as a distinct subspecies.

  5. Megafauna recovered from a cold hydrocarbon seep in the deep Alaskan Beaufort Sea, including a new species of Axinus (Thracidae: Bivalvia: Mollusca)

    NASA Astrophysics Data System (ADS)

    Powell, C. L.; Valentich-Scott, P.; Lorenson, T. D.; Edwards, B. D.

    2011-12-01

    Several specimens of a new species of Axinus and a single well-worn gastropod columella provisionally assigned to the genus Neptunea (Buccinidae: Gastropoda: Mollusca) were recently recovered from at least two cores, the longest of which is 5.72 m long, from a large seafloor mound, informally named the Canning Seafloor Mound (CSM). The CSM is located at 2,530 m water depth on the Alaskan Beaufort Sea slope north of Camden Bay and is a fluid explosion feature containing methane hydrate and methane-saturated sediments overlying a folded and faulted deep basin. Only two modern species of Axinus are currently known. Axinus grandis (Verrill & Smith, 1885) is a northern Atlantic species and the recently described species, A. cascadiensis Oliver and Holmes (2007), is only known from Baby Bare Seamount, Cascadia Basin, northeastern Pacific Ocean. Common fragments, single valves, and a single articulated specimen represent this new Axinus species. These shells were distributed over nearly the entire length of the primary core. All specimens show wear and (or) dissolution. The age of these specimens is unknown and no living representatives were encountered. The genus Axinus has a fossil record back to the early Eocene in England and the Paleocene and Eocene in Egypt. Biogeographically the genus appears to have originated in the Tethys Sea and became established in the Atlantic Ocean during the Eocene, spreading across the Arctic Ocean in the late Tertiary. With the opening of the Bering Strait in the latest Miocene or early Pliocene the genus Axinus migrated southwest into the northeast Pacific. Interestingly, hydrocarbon seep deposits are also present on the adjacent North Slope of Alaska in the Marsh Anticline at Carter Creek, Camden Bay. These rocks, the Nuwok beds, contain abundant Thracidae bivalve of the genus Thracia, but not Axinus, however the rocks also represent cold seep deposits. These rocks have been variously dated from Oligocene to Pliocene and the exact age remains uncertain. Neptunea are a predatory snails well represented in the earliest Miocene to Holocene of the northern Pacific Ocean and in the late Pliocene to Holocene of the northern Atlantic. The presence of Neptunea at CSM, if identified properly, gives a maximum age for these deposits of latest Miocene or early Pliocene, after the opening of the Bering Strait, although they could be as young as Holocene.

  6. Mechanisms and functional morphology associated with metal transport in Mercenaria mercenaria (bivalvia: mollusca): Progress report No. 7 for the contract period 1 September 1985 to 31 December 1986

    SciTech Connect

    Robinson, W.E.; Morse, M.P.

    1987-02-04

    Studies on metal transport in the quahog, Mercenaria mercenaria, are reported. Podocytes, a specialized type of cell that functions in ultrafiltration, have been identified in the pericardial glands of the quahog using transmission and scanning electron microscopy raising the question of whether metals may reach the kidney via the primary urine, or whether most metals arrive in the kidney via the blood. The accumulation of /sup 109/Cd in quahog extracellular kidney granules suggests the involvement the kidney cell's lysosomal system in the overall process of metal sequestration. The different patterns of metal interactions observed in the quahog kidney, digestive gland and gill demonstrate that each of these three organs utilizes different mechanisms of metal detoxification and accumulation.

  7. Sediment analysis does not provide a good measure of heavy metal bioavailability to Cerastoderma glaucum (Mollusca: Bivalvia) in confined coastal ecosystems

    SciTech Connect

    Arjonilla, M.; Gomez-Parra, A. ); Forja, J.M. )

    1994-06-01

    Sediments are considered a sink for metals entering the marine environment, especially in coastal areas. Once in the sediment layer, metals are distributed amongst all different phases of the sediment, governed by physicochemical conditions. One fraction is immobilized due to its incorporation into weakly reactive phases of the sediment; Another fraction may remain weakly bound to organic or mineral phases as sorbed, precipitated, or coprecipitated and complexed forms and can be assimilated by detritivorous and suspension-feeding benthic organisms. Many selective procedures have been suggested for metal extraction from sediments in order to estimate concentrations of fractions which are directly or indirectly available to the biota. The absence of a chemical treatment adequate for accurate quantification of metal bioavailability is well-known. Nevertheless, a good correlation between metal content in some organisms and in the sediment after a specific extraction treatment has sometimes been found so sediments are frequently used as indicators in pollution studies. In this paper, concentrations of heavy metals (Fe, Mn, Cu, Ph and Cd) in the cockle Cerastoderma glaucum, and in sediments at the same sampling locations are compared. C. glaucum is a suspension and deposit feeder, inhabiting a wide range of salinities. The study sampled 8 saltponds in the south of Cadiz Bay, located along a gradient of contamination produced by urban and industrial sewage effluents. The study sought to identify areas with different relative risk from metal pollution, in terms of biological effects and effects on water quality due to natural resuspension of sediments or to human relocation of sediments. C. glaucum was selected because of its wide distribution in the Bay, and also because it has no commercial value. This second fact means that its distribution and growth is not directly affected by man. 19 refs., 4 figs., 1 tab.

  8. The complete maternally and paternally inherited mitochondrial genomes of the endangered freshwater mussel Solenaia carinatus (Bivalvia: Unionidae) and implications for Unionidae taxonomy.

    PubMed

    Huang, Xiao-Chen; Rong, Jun; Liu, Yong; Zhang, Ming-Hua; Wan, Yuan; Ouyang, Shan; Zhou, Chun-Hua; Wu, Xiao-Ping

    2013-01-01

    Doubly uniparental inheritance (DUI) is an exception to the typical maternal inheritance of mitochondrial (mt) DNA in Metazoa, and found only in some bivalves. In species with DUI, there are two highly divergent gender-associated mt genomes: maternal (F) and paternal (M), which transmit independently and show different tissue localization. Solenaia carinatus is an endangered freshwater mussel species exclusive to Poyang Lake basin, China. Anthropogenic events in the watershed greatly threaten the survival of this species. Nevertheless, the taxonomy of S. carinatus based on shell morphology is confusing, and the subfamilial placement of the genus Solenaia remains unclear. In order to clarify the taxonomic status and discuss the phylogenetic implications of family Unionidae, the entire F and M mt genomes of S. carinatus were sequenced and compared with the mt genomes of diverse freshwater mussel species. The complete F and M mt genomes of S. carinatus are 16716 bp and 17102 bp in size, respectively. The F and M mt genomes of S. carinatus diverge by about 40% in nucleotide sequence and 48% in amino acid sequence. Compared to F counterparts, the M genome shows a more compact structure. Different gene arrangements are found in these two gender-associated mt genomes. Among these, the F genome cox2-rrnS gene order is considered to be a genome-level synapomorphy for female lineage of the subfamily Gonideinae. From maternal and paternal mtDNA perspectives, the phylogenetic analyses of Unionoida indicate that S. carinatus belongs to Gonideinae. The F and M clades in freshwater mussels are reciprocal monophyly. The phylogenetic trees advocate the classification of sampled Unionidae species into four subfamilies: Gonideinae, Ambleminae, Anodontinae, and Unioninae, which is supported by the morphological characteristics of glochidia. PMID:24358356

  9. Morphological and genetic diversity of the wood-boring Xylophaga (Mollusca, Bivalvia): new species and records from deep-sea Iberian canyons.

    PubMed

    Romano, Chiara; Voight, Janet Ruth; Pérez-Portela, Rocío; Martin, Daniel

    2014-01-01

    Deep-sea bivalves of the Xylophagaidae, a poorly known group, are obligate wood-borers. Deployment of wood in three submarine canyons off the Iberian coast, the Blanes and La Fonera Canyons (Mediterranean Sea) and the Avilés Canyon (Cantabric Sea, Bay of Biscay), lead to the discovery of four xylophagaid species in our samples. Xylophaga dorsalis (the dominant species), X. atlantica, X. cf. anselli and the new species X. brava, were identified on the basis of morphological data, and supported by a phylogenetic reconstruction based on the nuclear genes 18S rDNA and 28S rDNA and including several genus of Xylophagaidae. Genetic divergence between species of Xylophaga varied between genes, ranging from 0.5 to 4.0% for the 18SrDNA and from 4.1 to 16.6% for the 28SrDNA. Xylophaga brava sp. nov. appeared to be restricted to the Mediterranean and morphologically resembled the closely related X. cf. anselli from the Cantabrian Sea. However, they clearly diverged in two well-supported clades. Low levels of intraspecific variability and higher interspecific divergence between species also supported the existence of these two different species. Morphologically they differ in the number of cirri at the siphon openings, in the shape of the posterior shell and in the size of prodissoconch II. The new species is characterized by having weak, poorly mineralized mesoplax and siphons united throughout, covered by a periostracal, non-calcified tube; distinct proximal and distal siphons, the former translucent and soft, the latter muscular, with concentric rings. Xylophaga atlantica, previously known only from the western Atlantic, is reported for the first time in the Mediterranean Sea. Whether its presence in the Mediterranean indicates its natural distribution or reflects its recent introduction is unknown. Although xylophagaids have been previously reported to recruit heavily to wood deposited on the seabed, these four species colonized wood suspended 30 m above the seafloor. PMID:25061913

  10. Genomic in situ hybridization identifies parental chromosomes in hybrid scallop (Bivalvia, Pectinoida, Pectinidae) between female Chlamys farreri and male Argopecten irradians irradians

    PubMed Central

    Huang, Xiaoting; Bi, Ke; Lu, Wei; Wang, Shi; Zhang, Lingling; Bao, Zhenmin

    2015-01-01

    Abstract Interspecific crossing was artificially carried out between Chlamys farreri (Jones & Preston, 1904) ♀ and Argopecten irradians irradians (Lamarck, 1819) ♂, two of the dominant cultivated scallop species in China. Genomic in situ hybridization (GISH) was used to examine the chromosome constitution and variation in hybrids at early embryonic stage. The number of chromosomes in 66.38% of the metaphases was 2n = 35 and the karyotype was 2n = 3 m + 5 sm + 16 st + 11 t. After GISH, two parental genomes were clearly distinguished in hybrids, most of which comprised 19 chromosomes derived from their female parent (Chlamys farreri) and 16 chromosomes from their male parent (Argopecten irradians irradians). Some chromosome elimination and fragmentation was also observed in the hybrids. PMID:26140161

  11. Extirpation of freshwater mussels (Bivalvia: Unionidae) following the invasion of dreissenid mussels in an interconnecting river of the Laurentian Great Lakes

    USGS Publications Warehouse

    Schloesser, Don W.; Metcalfe-Smith, Janice L.; Kovalak, William P.; Longton, Gary D.; Smithee, Rick D.

    2006-01-01

    Previous (1992-1994) surveys for native freshwater mussels (Unionidae) along main channels of the Detroit River showed that unionids had been extirpated from all but four sites in the upper reaches of the river due to impacts of dreissenid mussels (Dreissena polymorpha and D. bugensis). These four sites were surveyed again in 1998 using the same sampling method (timed-random searches) to determine if they may serve as ''refugia'' where unionids and dreissenids co-exist. Two additional sites were sampled using additional methods (excavated-quadrat and line-transect searches) for comparison with unpublished data collected in 1987 and 1990. A total of four individuals of four species (Actinonaias ligamentina, Cyclonaias tuberculata, Lasmigona complanata and Pleurobema sintoxia) were found by timed-random searches at four sites in 1998 compared to 720 individuals of 24 species in 1992 and 39 individuals of 13 species in 1994. Excavated-quadrat and line-transect searches at the two additional sites yielded only one live specimen of Ptychobranchus fasciolaris compared to 288 individuals of 18 species in 1987 and 1990. Results of this study suggest that remaining densities of unionids in channels of the Detroit River are too low to support viable reproducing populations of any species. Therefore, we conclude that unionids have been extirpated from main channels of the Detroit River due to dreissenid infestation. As the Detroit River was one of the first water bodies in North America to be invaded by dreissenids, it is likely that unionids will also be extirpated from many other rivers and lakes across eastern North America over the next few decades. Resource agencies should be encouraged to implement active management programs to protect remaining unionid populations from zebra mussels.

  12. Temporal variation in life-history traits of the clam Tivela mactroides (Bivalvia: Veneridae): Density-dependent processes in sandy beaches

    NASA Astrophysics Data System (ADS)

    Turra, Alexander; Petracco, Marcelo; Amaral, A. Cecilia Z.; Denadai, Márcia R.

    2014-10-01

    Temporal variation in the structure and dynamics of a population of Tivela mactroides was examined over two periods (2003-2004 and 2007-2008) in the southern part of Caraguatatuba Bay, southeastern Brazil. During the first period from January 2003 to October 2004, sampling was conducted monthly. Sampling in the second period was performed in the summer (January and February 2007 and 2008) and winter (July and August 2007 and 2008). The von Bertalanffy growth function was applied to estimate growth parameters for both periods from length-frequency distributions. Production was determined using the mass-specific growth rate method. Results indicated that the mean abundance (±SE) of T. mactroides varied sharply between the two periods, with an increase of almost 150 times from 2003 to 2004 (8.67·102 ± 0.83·102 ind m-1) to 2007-2008 (1.25·105 ± 3.33·104 ind m-1). The higher abundance in the second period was related to successful recruitment events. While the mean biomass and the production were higher in the second (5.43 ± 0.87 kg AFDM m-1 and 7.89 kg AFDM m-1 yr-1) than in the first period (0.18 ± 0.02 kg AFDM m-1 and 0.18 kg AFDM m-1 yr-1), lower values of shell length, curvature parameter, asymptotic length of the VBGF, and the growth index phi-prime in 2007-2008 (17.57 ± 1.35 mm; K = 0.40 yr-1; L∞ = 38.60 mm, ϕ‧ = 2.78) than in 2003-2004 (26.21 ± 1.21 mm; K = 1.00 yr-1; L∞ = 40.75 mm, ϕ‧ = 3.22) were related to a strongly density-dependent growth process in the second period. The oscillation in growth observed in the second, but not in the first period also indicates a process of density-dependent growth. These sharp temporal variations in population parameters of T. mactroides suggest the occurrence of density-dependent processes, and reinforce the importance of these processes in structuring sandy-beach populations.

  13. Characterisation of 12 microsatellite loci in the Vietnamese commercial clam Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae) through next-generation sequencing.

    PubMed

    Thai, Binh Thanh; Tan, Mun Hua; Lee, Yin Peng; Gan, Han Ming; Tran, Trang Thi; Austin, Christopher M

    2016-05-01

    The marine clam Lutraria rhynchaena is gaining popularity as an aquaculture species in Asia. Lutraria populations are present in the wild throughout Vietnam and several stocks have been established and translocated for breeding and aquaculture grow-out purposes. In this study, we demonstrate the feasibility of utilising Illumina next-generation sequencing technology to streamline the identification and genotyping of microsatellite loci from this clam species. Based on an initial partial genome scan, 48 microsatellite markers with similar melting temperatures were identified and characterised. The 12 most suitable polymorphic loci were then genotyped using 51 individuals from a population in Quang Ninh Province, North Vietnam. Genetic variation was low (mean number of alleles per locus = 2.6; mean expected heterozygosity = 0.41). Two loci showed significant deviation from Hardy-Weinberg equilibrium (HWE) and the presence of null alleles, but there was no evidence of linkage disequilibrium among loci. Three additional populations were screened (n = 7-36) to test the geographic utility of the 12 loci, which revealed 100 % successful genotyping in two populations from central Vietnam (Nha Trang). However, a second population from north Vietnam (Co To) could not be successfully genotyped and morphological evidence and mitochondrial variation suggests that this population represents a cryptic species of Lutraria. Comparisons of the Qang Ninh and Nha Trang populations, excluding the 2 loci out of HWE, revealed statistically significant allelic variation at 4 loci. We reported the first microsatellite loci set for the marine clam Lutraria rhynchaena and demonstrated its potential in differentiating clam populations. Additionally, a cryptic species population of Lutraria rhynchaena was identified during initial loci development, underscoring the overlooked diversity of marine clam species in Vietnam and the need to genetically characterise population representatives prior to microsatellite development. The rapid identification and validation of microsatellite loci using next-generation sequencing technology warrant its integration into future microsatellite loci development for key aquaculture species in Vietnam and more generally, aquaculture countries in the South East Asia region. PMID:26922181

  14. Filter-feeding, food utilization, and nutrient remineralization by Corbicula fluminea (bivalvia) and its contribution to nutrient cycling in a North Carolina River

    SciTech Connect

    Lauritsen, D.D.

    1985-01-01

    The introduced Asiatic clam Corbicula fluminea is quite prolific, and since it is a filter-feeder, it can be expected to influence the cycling of nutrients within its habitat as a result of its feeding and excretory activities. Factors affecting filtration rates, food utilization, and excretion of metabolic wastes (ammonia and phosphate) were determined by laboratory experiments, and these physiological processes were then extrapolated to field estimates of Corbicula found in the upper Chowan River, N.C., to obtain an estimate of the potential impact the clams can have on nutrient cycling in the river. Clam filtration rates of four different /sup 14/C-labeled algae species (two greens, a blue-green, and a diatom) were similar, although partitioning of the ingested isotope showed significant differences between the algal foods. The diatom species was the most efficiently utilized by the clams, with more than 80% of the isotope ingested recovered in clam tissues. Corbicula freshly collected from the Chowan River excreted substantially more ammonia than phosphate, and rates of excretion of both nutrients were highest in summer. Clam excretion rates were much higher than sediment fluxes, and as a source of recycled nutrients, these clams could provide about one third of the nitrogen and phosphate requirements of the phytoplankton in the upper Chowan.

  15. Long-term feeding with Euglena gracilis cells modulates immune responses, oxidative balance and metabolic condition in Diplodon chilensis (Mollusca, Bivalvia, Hyriidae) exposed to living Escherichia coli.

    PubMed

    Bianchi, Virginia A; Castro, Juan M; Rocchetta, Iara; Nahabedian, Daniel E; Conforti, Visitación; Luquet, Carlos M

    2015-02-01

    We evaluated the modulating effect of long-term feeding with lyophilized Euglena gracilis cells on immune response, oxidative balance and metabolic condition of the freshwater mussel Diplodon chilensis. Mussels, previously fed with Scenedesmus vacuolatus (SV) or E. gracilis (EG) for 90 days, were challenged with an environmentally relevant concentration of Escherichia coli in water for 5 days, under feeding or starvation conditions. EG diet increased overall phagocytic activity and tissue hemocyte accumulation (gill and mantle), and favored hemocyte viability upon E. coli challenge. Tissular hemocyte accumulation, and humoral bacteriolytic activity and protein content were similarly stimulated by EG and E. coli, with no further effect when both stimuli were combined. Both, E. coli challenge and EG diet reduced gill bacteriolytic activity with respect to nonchallenged SV mussels, while no effect was observed in challenged EG mussels. Gill and digestive gland protein contents, along with digestive gland bacteriolytic activity were higher in EG than in SV mussels. Both SV and EG mussels showed increased gill mass upon E. coli challenge, while digestive gland mass was increased by bacterial challenge only in SV mussels. Bacterial challenge produced no effect on humoral reactive oxygen species levels of both groups. Total oxyradical scavenging capacity levels was reduced in challenged SV mussels but remained unaffected in EG ones. In general, EG diet decreased glutathione S-transferase and catalase activities in gill and digestive gland, compared with SV diet; but increased enzyme activity was evident in challenged mussels of both groups. Gill and digestive gland lipid peroxidation levels were higher in EG than in SV mussels but E. coli challenge had stronger effect on SV mussels. Adductor muscle RNA:DNA ratio was higher in EG mussels than in SV ones, and increased upon E. coli challenge in mussels of both groups. E. gracilis can be suggested as a nutritional and protective diet complement suitable for filtering bivalves. However, our results obtained from starved mussels show that starvation periods after supplying this diet should be avoided, since these could revert part of the acquired benefits and/or exacerbate detrimental effects. PMID:25463294

  16. Possibility for using of two Paulownia lines as a tool for remediation of heavy metal contaminated soil.

    PubMed

    Tzvetkova, Nikolina; Miladinova, Kamelya; Ivanova, Katya; Georgieva, Teodora; Geneva, Marya; Markovska, Yuliana

    2015-01-01

    One-year-old two Paulownia lines (Ptomentosa x fortunei--TF 01 and R elongata x fortunei--EF 02) were grown, as pot experiment, in soil collected from the field of waste depository of Kremikovtzi ferrous metallurgical industry near Sofia. The soil was heavily polluted with Cd. Metals content (Ca, Mg, K, Na, Cd, Cu, Pb, Zn and Fe) in soil and its distribution in roots, stems and leaves of both lines was studied. The results showed that Ca and K accumulated more in stem, Mg, Na, Fe and Cd in root, while Pb, Cu and Zn in the leaves of both lines. The bloaccumulation factor (BF) and translocation factor (TF) were evaluated in order to determine the potential of plants in removing metals from contaminated soil. The BF for Fe, Pb, Cu and Zn in TF 01 line exceeded that of EF 02 line--5.6; 1.03; 1.20; 1.14 times, respectively. TF was higher in TF 01 line for Fe, Pb and Cd (6.0; 1.92 and 1.03, respectively), but not for Cu and Zn. The success of phytoremediation depends on plant growth and restricted distribution of heavy metals in shoots. Our results showed that stem length and total leaf area of Paulownia elongata x fortunei were higher than Paulownia tomentosa x fortuneibut BF for Cu and Zn and TF for Pb was less. BF for Cd was 1.7 times higher and TF for Zn was 1.03 times higher in Paulownia elongata x fortunei. Selected two lines (P. tomentosa x fortunei--TF 01 and P elongataxfortunei--EF02) were accumulators of Cu, Zn and Cd. Paulownia tomentosax fortunei accumulated more Pb and Zn in aboveground parts, while Paulownia elongata x fortunei--accumulated Zn only. These lines proved to be a promising species for phytoremediation of heavy metal polluted soils due to high biomass productivity. PMID:26591894

  17. THREE YEAR VARIATION IN SHELL GROWTH OF THEMUSSEL, ELLIPTIO WACCAMAWENSIS (LEA), IN LAKEWACCAMAW, A BAY LAKE IN NORTH CAROLINA

    EPA Science Inventory

    Freshwater mussels (Bivalvia: Unionidae) are one of the most endangered animal taxa in North America, and continued research on unionids will improve management decisions regarding their conservation. One unexplored aspect of unionid ecology is the magnitude of interannual variat...

  18. Cementing mussels to oysters in the pteriomorphian tree: a phylogenomic approach

    PubMed Central

    González, Vanessa L.; Bieler, Rüdiger; Giribet, Gonzalo

    2016-01-01

    Mussels (Mytilida) are a group of bivalves with ancient origins and some of the most important commercial shellfish worldwide. Mytilida consists of approximately 400 species found in various littoral and deep-sea environments, and are part of the higher clade Pteriomorphia, but their exact position within the group has been unstable. The multiple adaptive radiations that occurred within Pteriomorphia have rendered phylogenetic classifications difficult and uncertainty remains regarding the relationships among most families. To address this phylogenetic uncertainty, novel transcriptomic data were generated to include all five orders of Pteriomorphia. Our results, derived from complex analyses of large datasets from 41 transcriptomes and evaluating possible pitfalls affecting phylogenetic reconstruction (matrix occupancy, heterogeneity, evolutionary rates, evolutionary models), consistently recover a well-supported phylogeny of Pteriomorphia, with the only exception of the most complete but smallest data matrix (Matrix 3: 51 genes, 90% gene occupancy). Maximum-likelihood and Bayesian mixture model analyses retrieve strong support for: (i) the monophyly of Pteriomorphia, (ii) Mytilida as a sister group to Ostreida, and (iii) Arcida as sister group to all other pteriomorphians. The basal position of Arcida is congruent with its shell microstructure (solely composed of aragonitic crystals), whereas Mytilida and Ostreida display a combination of a calcitic outer layer with an aragonitic inner layer composed of nacre tablets, the latter being secondarily lost in Ostreoidea. PMID:27358369

  19. Cementing mussels to oysters in the pteriomorphian tree: a phylogenomic approach.

    PubMed

    Lemer, Sarah; González, Vanessa L; Bieler, Rüdiger; Giribet, Gonzalo

    2016-06-29

    Mussels (Mytilida) are a group of bivalves with ancient origins and some of the most important commercial shellfish worldwide. Mytilida consists of approximately 400 species found in various littoral and deep-sea environments, and are part of the higher clade Pteriomorphia, but their exact position within the group has been unstable. The multiple adaptive radiations that occurred within Pteriomorphia have rendered phylogenetic classifications difficult and uncertainty remains regarding the relationships among most families. To address this phylogenetic uncertainty, novel transcriptomic data were generated to include all five orders of Pteriomorphia. Our results, derived from complex analyses of large datasets from 41 transcriptomes and evaluating possible pitfalls affecting phylogenetic reconstruction (matrix occupancy, heterogeneity, evolutionary rates, evolutionary models), consistently recover a well-supported phylogeny of Pteriomorphia, with the only exception of the most complete but smallest data matrix (Matrix 3: 51 genes, 90% gene occupancy). Maximum-likelihood and Bayesian mixture model analyses retrieve strong support for: (i) the monophyly of Pteriomorphia, (ii) Mytilida as a sister group to Ostreida, and (iii) Arcida as sister group to all other pteriomorphians. The basal position of Arcida is congruent with its shell microstructure (solely composed of aragonitic crystals), whereas Mytilida and Ostreida display a combination of a calcitic outer layer with an aragonitic inner layer composed of nacre tablets, the latter being secondarily lost in Ostreoidea. PMID:27358369

  20. Genetic Diversity of the Biofilm Covering Montacuta ferruginosa (Mollusca, Bivalvia) as Evaluated by Denaturing Gradient Gel Electrophoresis Analysis and Cloning of PCR-Amplified Gene Fragments Coding for 16S rRNA†

    PubMed Central

    Gillan, David C.; Speksnijder, Arjen G. C. L.; Zwart, Gabriel; De Ridder, Chantal

    1998-01-01

    The shell of the bivalve Montacuta ferruginosa, a symbiont living in the burrow of an echinoid, is covered with a rust-colored biofilm. This biofilm includes different morphotypes of bacteria that are encrusted with a mineral rich in ferric ion and phosphate. The aim of this research was to determine the genetic diversity and phylogenetic affiliation of the biofilm bacteria. Also, the possible roles of the microorganisms in the processes of mineral deposition within the biofilm, as well as their impact on the biology of the bivalve, were assessed by phenotypic inference. The genetic diversity was determined by denaturing gradient gel electrophoresis (DGGE) analysis of short (193-bp) 16S ribosomal DNA PCR products obtained with primers specific for the domain Bacteria. This analysis revealed a diverse consortium; 11 to 25 sequence types were detected depending on the method of DNA extraction used. Individual biofilms analyzed by using the same DNA extraction protocol did not produce identical DGGE profiles. However, different biofilms shared common bands, suggesting that similar bacteria can be found in different biofilms. The phylogenetic affiliations of the sequence types were determined by cloning and sequencing the 16S rRNA genes. Close relatives of the genera Pseudoalteromonas, Colwellia, and Oceanospirillum (members of the γ-Proteobacteria lineage), as well as Flexibacter maritimus (a member of the Cytophaga-Flavobacter-Bacteroides lineage), were found in the biofilms. We inferred from the results that some of the biofilm bacteria could play a role in the mineral formation processes. PMID:9726898

  1. The biology and functional morphology of Coralliophaga lithophagella (Bivalvia: Arcticoidea: Trapezidae): An abyssate, deep-water, nestler from the Açores. With comparative notes on the estuarine Trapezium liratum from Hong Kong

    NASA Astrophysics Data System (ADS)

    Morton, Brian

    2014-04-01

    Coralliophaga lithophagella is a nestler of basaltic rocks in the deeper waters (˜57-360 m) of the Açores and of shallower limestone karst in the Mediterranean where it predominately occurs in empty lithophagine burrows. In the Açores, because of low oceanic productivity and the basaltic, un-boreable, substratum, C. lithophagella is but 50% the shell length of continental European conspecifics and the shell's postero-dorsal margin is growth elevated to enhance particle capture. This is also achieved with relatively enormous ctenidia, minute labial palps and a simplified intestine. Unusually amongst the Trapezidae, C. lithophagella is abyssate and the foot is reduced. Also atypically, and during ontogeny, the shell enlarges postero-dorsally to facilitate particle capture. Anatomical features of the representatives of the constituent genera of the Trapezidae are compared one with another and with Arctica islandica (Arcticidae), the constituent families of the Arcticoidea. It is concluded that the Trapezidae constitutes a discrete clade of epibenthic nestlers, possibly descended from an endobenthic arcticoid ancestor, and showing a trend towards a reduction in shell and hinge complexity. The status of Fluviolanatus subtorta with mantle margins filled with single-celled algae and putatively assigned to the Trapezidae, awaits molecular confirmation.

  2. Ion microprobe assessment of the heterogeneity of Mg/Ca, Sr/Ca and Mn/Ca ratios in Pecten maximus and Mytilus edulis (bivalvia) shell calcite precipitated at constant temperature

    NASA Astrophysics Data System (ADS)

    Freitas, P. S.; Clarke, L. J.; Kennedy, H.; Richardson, C. A.

    2009-01-01

    Small-scale heterogeneity of biogenic carbonate elemental composition can be a significant source of error in the accurate use of element/Ca ratios as geochemical proxies. In this study ion microprobe (SIMS) profiles showed significant small-scale variability of Mg/Ca, Sr/Ca and Mn/Ca ratios in new shell calcite of the marine bivalves P. maximus and Mytilus edulis that was precipitated during a constant-temperature culturing experiment. Elevated Mg/Ca, Sr/Ca and Mn/Ca ratios were found to be associated with the deposition of elaborate shell features, i.e. a shell surface stria in P. maximus and surface shell disturbance marks in both species, the latter a common occurrence in bivalve shells. In both species the observed small-scale elemental heterogeneity most likely was not controlled by variable transport of ions to the extra-pallial fluid, but by factors such as shell Mg content influencing Sr and Mn heterogeneity, the influence of shell organic content and/or conditions at the shell crystal-solution interface. Invariant Mg/Ca ratios observed in the mid and innermost regions of the P. maximus shell suggests a potential application as a palaeotemperature proxy.

  3. Ion microprobe assessment of the heterogeneity of Mg/Ca, Sr/Ca and Mn/Ca ratios in Pecten maximus and Mytilus edulis (bivalvia) shell calcite precipitated at constant temperature

    NASA Astrophysics Data System (ADS)

    Freitas, P. S.; Clarke, L. J.; Kennedy, H.; Richardson, C. A.

    2009-07-01

    Small-scale heterogeneity of biogenic carbonate elemental composition can be a significant source of error in the accurate use of element/Ca ratios as geochemical proxies. In this study ion microprobe (SIMS) profiles showed significant small-scale variability of Mg/Ca, Sr/Ca and Mn/Ca ratios in new shell calcite of the marine bivalves Pecten maximus and Mytilus edulis that was precipitated during a constant-temperature culturing experiment. Elevated Mg/Ca, Sr/Ca and Mn/Ca ratios were found to be associated with the deposition of elaborate shell features, i.e. a shell surface stria in P. maximus and surface shell disturbance marks in both species, the latter a common occurrence in bivalve shells. In both species the observed small-scale elemental heterogeneity most likely was not controlled by variable transport of ions to the extra-pallial fluid, but by factors such as the influence of shell organic content and/or crystal size and orientation, the latter reflecting conditions at the shell crystal-solution interface. In the mid and innermost regions of the P. maximus shell the lack of significant small-scale variation of Mg/Ca ratios, which is consistent with growth at constant temperature, suggest a potential application as a palaeotemperature proxy. Cross-growth band element/Ca ratio profiles in the interior of bivalve shells may provide more promising palaeo-environmental tools than sampling from the outer region of bivalve shells.

  4. Argyrophilic nucleolar organizer regions (AgNORs) in interphases and metaphases of normal and neoplastic gill cells of Macoma balthica (Bivalvia: Tellinidae) from the Gulf of Gdansk, Baltic Sea.

    PubMed

    Smolarz, K; Wolowicz, M; Thiriot-Quiévreux, C

    2003-10-24

    Chromosome analysis of gill cells of different populations of Macoma balthica (L.) from the Bay of Gdansk (Baltic Sea) revealed 2 clam categories, 1 with neoplastic features and 1 without. Silver-staining was performed on interphase and metaphase cells of both categories. The mean argyrophilic nucleolar organizer region (AgNOR) count per abnormal interphase cell was significantly higher than in normal interphase cells. Normal silver-stained metaphases had 3 nucleolar organizer region (NOR) chromosome phenotypes. The location of the NORs in the most frequent phenotype (55.6% in 54 metaphases scored) was interstitial on the largest metacentric chromosome pair, Pair No. 1. Abnormal silver-stained metaphases had a higher number of active NOR sites. Different phenotypes were observed (frequency greater than 10% for 67 metaphases scored); 2 were similar to those in normal metaphases and 5 were ectopic. The higher activity of AgNORs observed in abnormal cells confirmed the diagnosis of malignant neoplasia. PMID:14667039

  5. First report on the occurrence of the comb pen shell, Atrina pectinata (Linnaeus, 1767) (Bivalvia: Pinnidae) in Ulleungdo Island in the East Sea: Ecology and molecular identification of the species using COI gene sequence

    NASA Astrophysics Data System (ADS)

    Yang, Hyun-Sung; Kang, Hyun-Sil; Park, Heung-Sik; Noh, Choong Hwan; Jeong, Eui-Young; Choi, Kwang-Sik

    2015-12-01

    Pen shell is one of the largest marine bivalves inhabiting shallow subtidal soft bottoms in the west Pacific and Indian Oceans. In Korea, the comb pen shell Atrina pectinata fisheries has been established on the south and west coasts. Recently, a pen shell population has been discovered from a subtidal sand flat (25-30 m depth) in Ulleungdo Island located in the East Sea of Korea, suggesting a potential shellfish resource in this area. In the present study, we first surveyed the population density and size of the unique pen shell using SCUBA, and identified the pen shell to species level using mitochondrial cytochrome oxidase I gene (COI) sequence. An underwater survey carried out from July to September 2013 revealed that populations of pen shell patched on subtidal sand flat at a depth of 20-25 m. Grain size analysis indicated that sand particles accounted for 99% of the 600 × 700 m sand flat. The underwater survey also indicated that density of the pen shell ranged between 6-19 ind/m2, with a mean of 11 ind/m2. Shell height (i.e. longest axis of the shell) of the pen shell on the sand flat varied between 17.2 cm to 28.8 cm, with a mean of 25.1 cm, and the age was estimated to range between 1.5-7.5 yrs, with a mean of 5 yr. COI DNA sequence obtained from the pen shell in this study showed 98.9-99.2% similarity to Atrina pectinata (Linnaeus 1767) reported from Japan. In the cluster analysis, the COI DNA sequence of the pen shells from Ulleungdo Island was grouped with A. pectinata reported from Japan and China, indicating that the pen shell discovered in this study was A. pectinata, commonly distributed on the west and south coasts of Korea.

  6. Nematotoxicity of drupacine and a Cephalotaxus alkaloid preparation against the plant-parasitic nematodes Meloidogyne incognita and Bursaphelenchus xylophilus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Species of Cephalotaxus (the plum yews) produce nematotoxic compounds of unknown identity. Consequently, bioassay-guided fractionation was employed to identify the compound(s) in Cephalotaxus fortunei twigs and leaves with activity against plant-parasitic nematodes. A crude alkaloid extract, particu...

  7. Rapid, effective DNA isolation from Osmanthus via alkaline lysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Osmanthus contains many popular ornamental species including fragrant tea-olive (O. fragrans) and Fortune’s tea-olive (Osmanthus x fortunei). Growers seek improved Osmanthus varieties; however, few molecular tools exist for this genus. Furthermore, the variability of leaf structure and pre...

  8. Shell biofilm nitrification and gut denitrification contribute to emission of nitrous oxide by the invasive freshwater mussel Dreissena polymorpha (zebra mussel).

    PubMed

    Svenningsen, Nanna B; Heisterkamp, Ines M; Sigby-Clausen, Maria; Larsen, Lone H; Nielsen, Lars Peter; Stief, Peter; Schramm, Andreas

    2012-06-01

    Nitrification in shell biofilms and denitrification in the gut of the animal accounted for N(2)O emission by Dreissena polymorpha (Bivalvia), as shown by gas chromatography and gene expression analysis. The mussel's ammonium excretion was sufficient to sustain N(2)O production and thus potentially uncouples invertebrate N(2)O production from environmental N concentrations. PMID:22492461

  9. Determination of shell deposition rates of Arctica islandica from the New York Bight using natural /sup 228/Ra and /sup 228/Th and bomb-produced /sup 14/C

    SciTech Connect

    Turekian, K.K.; Cochran, J.K.; Nozaki, Y.; Thompson, I.; Jones, D.S.

    1982-01-01

    Shell deposition rates of specimens of Arctica islandica (Mollusca: Bivalvia) from the New York Bight were determined using natural /sup 228/Ra and /sup 228/Th and bomb /sup 14/C. The specimens from deep (>55 m) offshore waters show annual growth banding. A shell obtained from the inner bight at <30-m depth seems to be younger than indicated by band counting.

  10. Shell Biofilm Nitrification and Gut Denitrification Contribute to Emission of Nitrous Oxide by the Invasive Freshwater Mussel Dreissena polymorpha (Zebra Mussel)

    PubMed Central

    Svenningsen, Nanna B.; Heisterkamp, Ines M.; Sigby-Clausen, Maria; Larsen, Lone H.; Nielsen, Lars Peter; Stief, Peter

    2012-01-01

    Nitrification in shell biofilms and denitrification in the gut of the animal accounted for N2O emission by Dreissena polymorpha (Bivalvia), as shown by gas chromatography and gene expression analysis. The mussel's ammonium excretion was sufficient to sustain N2O production and thus potentially uncouples invertebrate N2O production from environmental N concentrations. PMID:22492461

  11. Growth variation of Paulownia Sieb. and Zucc. species and origins at the nursery stage in Kastamonu-Turkey.

    PubMed

    Ayan, S; Sivacioglu, A; Bilir, N

    2006-07-01

    The present study was carried out on Paulownia tomentosa (6), Paulownia elongate (4), Paulownia fortunei (5) and Paulownia fortunei x tomentosa (1) origins at Kastamonu Forest Nursery. The seedling height growth (SH), root collar diameter (RCD), dry root percentage (DRP) and seedling percentage (SP) of one-year old seedlings of the origins were studied for comparing growth performance of the species and origins and discussing for guidance to field stage based on nursery stage. As a result, P. tomentosa x fortunei hybrid has the highest SH (72.62 cm) among the used species. Significant difference was determined among the origins as to the SH and DRP. The maximum SH were determined for P. tomentosa Beijing-Daxin (81.32 cm) and P. elongata Beijing-Daxin (80.76 cm) origins. The maximum DRP were determined for P. tomentosa Anhui-Tongling (77%) origin. There were no significant differences based on RCD and SP among the species and the origins. Among the parents, there were important diversities for SH and RCD. As a final remark, observations and evaluations of the Paulownia studies should be included with the clonal variation for further studies because of the observed growth variations within the population. PMID:17402240

  12. Effects of salinity on the photosynthetic apparatus of two Paulownia lines.

    PubMed

    Stefanov, Martin; Yotsova, Ekaterina; Rashkov, Georgi; Ivanova, Katya; Markovska, Yuliana; Apostolova, Emilia L

    2016-04-01

    The effects of soil salinity on the functional activity of photosynthetic apparatus and pigment composition of two Paulownia lines (Paulownia tomentosa x fortunei and Paulownia elongata x elongata) were investigated. PAM chlorophyll fluorescence measurements revealed that salinity leads to: (i) an increase of the photochemical quenching coefficient (qP) and the linear electron transport rate (ETR) in both lines of Paulownia, while the maximum quantum yield of the primary photochemistry of PSII in the dark adapted state (Fv/Fm) was unaffected; (ii) improved the efficiency of the photochemical energy conversion (ФPSII); (iii) an impact on the chlorophyll fluorescence decrease ratio (RFd), which correlates to the net CO2 assimilation rate; (iv) an impact on [Formula: see text] reoxidation. The analysis of the kinetics of P700(+) reduction upon turning off far-red irradiation revealed that salinization lead to a delay of the cyclic electron transport around PSI in both studied lines as the effect on this process is more pronounced in P. tomentosa x fortunei than in (in comparison with) P. elongata x elongata. The present experimental results suggested high salt tolerance of the studied lines Paulownia, but P. tomentosa x fortunei is more tolerant to salinity than P. elongata x elongata. Molecular mechanisms involved in the Paulownia response to the soil salinity are discussed. PMID:26854407

  13. Food habits and seasonal variation of stomach contents of tongue sole Cynoglossus semilaevis (Günther) in the Bohai Sea

    NASA Astrophysics Data System (ADS)

    Dou, Shuozeng

    1993-03-01

    Examination of the food habits and seasonal variation of the stomach contents of adult tongue sole, Cynoglossus semilaevis (Günther) taken in July 1982 July 1983 from Laizhou Bay and the Huanghe River estuary of the Bohai Sea showed crustacea, bivalvia and small fishes comprised the main prey. Invertebrates such as polychaeta, cephalopoda, gastropoda, echinodermata and actiniaria were also intermittently found in them. They intensively fed all the year found (monthly feeding rate of over 80%). The main food items were Alpheus japonica, Alpheus distinguendus. Oratosquilla oratoria, Eucrate crenata and Carcinoplax vestitus, etc. In summer and autumn, the portion of bivalvia such as Cultellus attenuatus and Musculus senhousei increased steadily. From summer to winter, a stable proportion of small fishes such as Rhinogobius pflaumi and Setipinna taty was in the diet.

  14. Occurrence and role of a Quaternary base, trimethylamine oxide, in two cockle species, Cerastoderma edule and Cerastoderma lamarcki

    NASA Astrophysics Data System (ADS)

    de Vooys, C. G. N.

    2002-02-01

    Trimethylamine oxide was demonstrated in the tissues of two European cockle species: Cerastoderma edule and Cerastoderma lamarcki (Mollusca: Bivalvia). No role in osmoregulation could be demonstrated, but a passive accumulation of the compound was found. Trimethylamine was demonstrated to be present in phytoplankton. Passive changes of the concentration of trimethylamine oxide are likely to occur in cockle tissues depending on the concentration of trimethylamine in the food.

  15. The Calyptogena magnifica chemoautotrophic symbiont genome

    SciTech Connect

    Newton, I.L.; Woyke, T.; Auchtung, T.A.; Dilly, G.F.; Dutton,R.J.; Fisher, M.C.; Fontanez, K.M.; Lau, E.; Stewart, F.J.; Richardson,P.M.; Barry, K.W.; Saunders, E.; Detter, J.C.; Wu, D.; Eisen, J.A.; Cavanaugh, C.M.

    2007-03-01

    Chemoautotrophic endosymbionts are the metabolic cornerstone of hydrothermal vent communities, providing invertebrate hosts with nearly all of their nutrition. The Calyptogena magnifica (Bivalvia: Vesicomyidae) symbiont, Candidatus Ruthia magnifica, is the first intracellular sulfur-oxidizing endosymbiont to have its genome sequenced, revealing a suite of metabolic capabilities. The genome encodes major chemoautotrophic pathways as well as pathways for biosynthesis of vitamins, cofactors, and all 20 amino acids required by the clam.

  16. Disturbance of shallow marine soft-bottom environments and megabenthos assemblages by a huge tsunami induced by the 2011 M9.0 Tohoku-Oki earthquake.

    PubMed

    Seike, Koji; Shirai, Kotaro; Kogure, Yukihisa

    2013-01-01

    Huge tsunami waves associated with megathrust earthquakes have a severe impact on shallow marine ecosystems. We investigated the impact of a tsunami generated by the 2011 M9.0 Tohoku-Oki earthquake on the seafloor and large benthic animals in muddy and sandy ria coasts (Otsuchi and Funakoshi bays) in northeastern Japan. We conducted underwater field surveys using scuba equipment in water depths of <20 m before the tsunami (September 2010) and after the tsunami (September 2011 and September 2012). During the study period, episodic changes in topography and grain-size composition occurred on the seafloor of the study area. Megabenthos sampling revealed a distinct pattern of distribution succession for each benthic species. For example, the protobranch bivalve Yoldia notabilis (Bivalvia: Nuculanidae) and the heterodont bivalve Felaniella usta (Bivalvia: Ungulinidae) disappeared after the tsunami event, whereas the distribution of the venus clam Gomphina melanaegis (Bivalvia: Veneridae) remained unchanged. In addition, the patterns of succession for a single species, such as the giant button top shell Umbonium costatum (Gastropoda: Trochidae) and the heart urchin Echinocardium cordatum (Echinoidea: Loveniidae), varied between the two bays studied. Our data also show that reestablishment of some benthic animal populations began within 18 months of the tsunami disturbance. PMID:23762365

  17. Disturbance of Shallow Marine Soft-Bottom Environments and Megabenthos Assemblages by a Huge Tsunami Induced by the 2011 M9.0 Tohoku-Oki Earthquake

    PubMed Central

    Seike, Koji; Shirai, Kotaro; Kogure, Yukihisa

    2013-01-01

    Huge tsunami waves associated with megathrust earthquakes have a severe impact on shallow marine ecosystems. We investigated the impact of a tsunami generated by the 2011 M9.0 Tohoku-Oki earthquake on the seafloor and large benthic animals in muddy and sandy ria coasts (Otsuchi and Funakoshi bays) in northeastern Japan. We conducted underwater field surveys using scuba equipment in water depths of <20 m before the tsunami (September 2010) and after the tsunami (September 2011 and September 2012). During the study period, episodic changes in topography and grain-size composition occurred on the seafloor of the study area. Megabenthos sampling revealed a distinct pattern of distribution succession for each benthic species. For example, the protobranch bivalve Yoldia notabilis (Bivalvia: Nuculanidae) and the heterodont bivalve Felaniella usta (Bivalvia: Ungulinidae) disappeared after the tsunami event, whereas the distribution of the venus clam Gomphina melanaegis (Bivalvia: Veneridae) remained unchanged. In addition, the patterns of succession for a single species, such as the giant button top shell Umbonium costatum (Gastropoda: Trochidae) and the heart urchin Echinocardium cordatum (Echinoidea: Loveniidae), varied between the two bays studied. Our data also show that reestablishment of some benthic animal populations began within 18 months of the tsunami disturbance. PMID:23762365

  18. Microsatellite markers in Paulownia kawakamii (Scrophulariaceae) and cross-amplification in other Paulownia species.

    PubMed

    Wang, H W; Duan, J M; Zhang, P; Cheng, Y Q; Wu, J W; Wang, G Z

    2013-01-01

    Paulownia kawakamii is a fast-growing timber tree. In this study, 21 primer sets were developed using an enriched genomic library. The genetic diversity was measured in one P. kawakamii population. The number of alleles per locus ranged from 2 to 19. The observed and expected heterozygosities varied from 0.158 to 0.842 (mean = 0.421) and from 0.376 to 0.952 (mean = 0.771), respectively. All 21 loci were also polymorphic in closely related species (P. tomentosa, P. elongata, and P. fortunei). The described markers will be useful in future population genetic studies and molecular breeding of these Paulownia species. PMID:24085436

  19. Functional Surface of the golden mussel's foot: morphology, structures and the role of cilia on underwater adhesion.

    PubMed

    Andrade, Gabriela Rabelo; de Araújo, João Locke Ferreira; Nakamura Filho, Arnaldo; Guañabens, Anna Carolina Paganini; Carvalho, Marcela David de; Cardoso, Antônio Valadão

    2015-09-01

    In this study we characterized the surface morphology and ultrastructure of the foot of the golden mussel, Limnoperna fortunei (Dunker, 1857), relating its characteristics to the attaching mechanisms of this mollusk. The observation of the foot of this bivalve reveals the presence of micro-scaled cilia with a unique shape, which has a narrowing at its end. This characteristic was associated to the capacity for underwater adhesion to substrates through the employment of van der Waals forces, resembling the adhesion phenomenon of the gecko foot. The temporary attachment during locomotion by means of the foot to substrates was observed to be strong even on smooth surfaces, like glass, or hydrophobic waxy surfaces. Comparing TEM and light microscopy results it was possible to associate the mucous secretions and secreting cells found along the tissues to the production of the byssus inside the groove on the ventral portion of the foot. Not only our experiments, but also the state of the art allowed us to discard the involvement of secretions produced in the foot of the mussel to the temporary adhesion. Through SEM images it was possible to build a virtual three-dimensional model where total foot surface was measured for the estimated calculation of van der Waals forces. Also, some theoretical analysis and considerations have been made concerning the characteristics of the functional surface of L. fortunei foot. PMID:26046265

  20. Mortality through ontogeny of soft-bottom marine invertebrates with planktonic larvae

    NASA Astrophysics Data System (ADS)

    Pedersen, Troels Møller; Hansen, Jørgen L. S.; Josefson, Alf B.; Hansen, Benni W.

    2008-09-01

    The present survey covers one spawning season of marine benthic invertebrates in a large geographical area, the inner Danish waters, and includes a wide range of habitats with steep salinity and nutrient load gradients. The loss ratios of soft-bottom marine invertebrates from one development stage to the next is calculated based on average abundances of pelagic larvae, benthic post-larvae and adults of Bivalvia, Gastropoda, Polychaeta and Echinodermata, with planktonic development. This gives a rough estimate of the larval and post-larval mortality. Loss ratios between post-larvae stage and adult stage (post-larval mortality) varies from 3:1 to 7:1 (71.2-84.9%) and loss ratios between larvae and post-larvae (larval mortality) and between larvae and adult, ranging from 7:1 to 42:1 (85.2-97.6%) and from 45:1 to 210:1 (97.8-99.5%), respectively. The results show a remarkable unity in loss ratios (mortality) between the mollusc taxa (Bivalvia and Gastropoda) at the phylum/class level. This similarity in loss ratios among the mollusc taxa exhibiting the same developmental pathways suggests that the mortality is governed by the same biotic and abiotic factors. Larval mortality is estimated to range from 0.10 d - 1 to 0.32 d - 1 for Bivalvia and ranging from 0.09 d - 1 to 0.23 d - 1 for Polychaeta. The species loss ratios combined with specific knowledge of the reproduction cycles give estimated loss ratios (mortality) between the post-larvae and the adult stage of 25:1 and 14:1 for the bivalves Abra spp. and Mysella bidentata. For the polychaete Pygospio elegans the loss ratio (larval mortality) between the larvae and the post-larval stage is 154:1 and between the post-larvae and the adult stage 41:1. For Pholoe inornata the loss ratio between post-larvae and adults is 7:1. The present results confirm that the larval stage, metamorphosis and settlement are the critical phase in terms of mortality in the life cycle for Bivalvia. Assuming steady state based on actual

  1. Impact tolerance in mussel thread networks by heterogeneous material distribution

    NASA Astrophysics Data System (ADS)

    Qin, Zhao; Buehler, Markus J.

    2013-07-01

    The Mytilidae, generally known as marine mussels, are known to attach to most substrates including stone, wood, concrete and iron by using a network of byssus threads. Mussels are subjected to severe mechanical impacts caused by waves. However, how the network of byssus threads keeps the mussel attached in this challenging mechanical environment is puzzling, as the dynamical forces far exceed the measured strength of byssus threads and their attachment to the environment. Here we combine experiment and simulation, and show that the heterogeneous material distribution in byssus threads has a critical role in decreasing the effect of impact loading. We find that a combination of stiff and soft materials at an 80:20 ratio enables mussels to rapidly and effectively dissipate impact energy. Notably, this facilitates a significantly enhanced strength under dynamical loading over 900% that of the strength under static loading.

  2. Impact tolerance in mussel thread networks by heterogeneous material distribution.

    PubMed

    Qin, Zhao; Buehler, Markus J

    2013-01-01

    The Mytilidae, generally known as marine mussels, are known to attach to most substrates including stone, wood, concrete and iron by using a network of byssus threads. Mussels are subjected to severe mechanical impacts caused by waves. However, how the network of byssus threads keeps the mussel attached in this challenging mechanical environment is puzzling, as the dynamical forces far exceed the measured strength of byssus threads and their attachment to the environment. Here we combine experiment and simulation, and show that the heterogeneous material distribution in byssus threads has a critical role in decreasing the effect of impact loading. We find that a combination of stiff and soft materials at an 80:20 ratio enables mussels to rapidly and effectively dissipate impact energy. Notably, this facilitates a significantly enhanced strength under dynamical loading over 900% that of the strength under static loading. PMID:23880603

  3. The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii

    PubMed Central

    Passamonti, Marco

    2016-01-01

    Bivalve mitochondrial genomes show many uncommon features, like additional genes, high rates of gene rearrangement, high A-T content. Moreover, Doubly Uniparental Inheritance (DUI) is a distinctive inheritance mechanism allowing some bivalves to maintain and transmit two separate sex-linked mitochondrial genomes. Many bivalve mitochondrial features, such as gene extensions or additional ORFs, have been proposed to be related to DUI but, up to now, this topic is far from being understood. Several species are known to show this unusual organelle inheritance but, being widespread only among Unionidae and Mytilidae, DUI distribution is unclear. We sequenced and characterized the complete female- (F) and male-transmitted (M) mitochondrial genomes of Meretrix lamarckii, which, in fact, is the second species of the family Veneridae where DUI has been demonstrated so far. The two mitochondrial genomes are comparable in length and show roughly the same gene content and order, except for three additional tRNAs found in the M one. The two sex-linked genomes show an average nucleotide divergence of 16%. A 100-aminoacid insertion in M. lamarckii M-cox2 gene was found; moreover, additional ORFs have been found in both F and M Long Unassigned Regions of M. lamarckii. Even if no direct involvement in DUI process has been demonstrated so far, the finding of cox2 insertions and supernumerary ORFs in M. lamarckii both strengthens this hypothesis and widens the taxonomical distribution of such unusual features. Finally, the analysis of inter-sex genetic variability shows that DUI species form two separate clusters, namely Unionidae and Mytilidae+Veneridae; this dichotomy is probably due to different DUI regimes acting on separate taxa. PMID:27083010

  4. The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii.

    PubMed

    Bettinazzi, Stefano; Plazzi, Federico; Passamonti, Marco

    2016-01-01

    Bivalve mitochondrial genomes show many uncommon features, like additional genes, high rates of gene rearrangement, high A-T content. Moreover, Doubly Uniparental Inheritance (DUI) is a distinctive inheritance mechanism allowing some bivalves to maintain and transmit two separate sex-linked mitochondrial genomes. Many bivalve mitochondrial features, such as gene extensions or additional ORFs, have been proposed to be related to DUI but, up to now, this topic is far from being understood. Several species are known to show this unusual organelle inheritance but, being widespread only among Unionidae and Mytilidae, DUI distribution is unclear. We sequenced and characterized the complete female- (F) and male-transmitted (M) mitochondrial genomes of Meretrix lamarckii, which, in fact, is the second species of the family Veneridae where DUI has been demonstrated so far. The two mitochondrial genomes are comparable in length and show roughly the same gene content and order, except for three additional tRNAs found in the M one. The two sex-linked genomes show an average nucleotide divergence of 16%. A 100-aminoacid insertion in M. lamarckii M-cox2 gene was found; moreover, additional ORFs have been found in both F and M Long Unassigned Regions of M. lamarckii. Even if no direct involvement in DUI process has been demonstrated so far, the finding of cox2 insertions and supernumerary ORFs in M. lamarckii both strengthens this hypothesis and widens the taxonomical distribution of such unusual features. Finally, the analysis of inter-sex genetic variability shows that DUI species form two separate clusters, namely Unionidae and Mytilidae+Veneridae; this dichotomy is probably due to different DUI regimes acting on separate taxa. PMID:27083010

  5. Complete mitochondrial genome of Vaginulus alte and Homoiodoris japonica.

    PubMed

    Liu, Chen; Wu, Xin; Shen, He Ding

    2016-09-01

    The complete mitochondrial genome sequence of Vaginulus alte and Homoiodoris japonica are described first in the article. The mitogenomes (14 772 bp and 14 601 bp) contain 22 tRNA genes, two ribosomal RNA genes, and 13 protein-coding genes, and one putative control region (CR). CR is not well characterized due to the lack of discrete conserved sequence blocks. This characteristic is similar with CRs of other invertebrate mitochondrial genomes, which is the typical bivalvia mitochondrial gene composition. PMID:26244691

  6. Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA.

    PubMed

    Goggin, C L; Barker, S C

    1993-07-01

    Parasites of the genus Perkinsus destroy marine molluscs worldwide. Their phylogenetic position within the kingdom Protista is controversial. Nucleotide sequence data (1792 bp) from the small subunit rRNA gene of Perkinsus sp. from Anadara trapezia (Mollusca: Bivalvia) from Moreton Bay, Queensland, was used to examine the phylogenetic affinities of this enigmatic genus. These data were aligned with nucleotide sequences from 6 apicomplexans, 3 ciliates, 3 flagellates, a dinoflagellate, 3 fungi, maize and human. Phylogenetic trees were constructed after analysis with maximum parsimony and distance matrix methods. Our analyses indicate that Perkinsus is phylogenetically closer to dinoflagellates and to coccidean and piroplasm apicomplexans than to fungi or flagellates. PMID:8366895

  7. [The distribution of the radionuclides in the main components of lake ecosystems within the Chernobyl NPP exclusion zone].

    PubMed

    2005-01-01

    The results of the studies devoted to the distribution of radionuclides 90Sr, 137Cs, 238Pu, 239 + 240Pu and 241Am in 1998-2003 in main components of Glubokoe Lake and Dalekoe-1 Lake located within Krasnensky flood lands of the Pripyat River (inner exclusion zone of the Chernobyl NPP) were analysed. The data about the radionuclide content in bottom sediments, in water, in seston, in macrozoobenthos (including bivalvia molluscs), in gasteropods molluscs, in higher aquatic plants and in fish are presented. PMID:16080615

  8. Tide-associated biological rhythms of some white sea littoral invertebrates.

    NASA Astrophysics Data System (ADS)

    Gusev, O. A.; Golubev, A. I.

    2001-01-01

    We report the results from two years of laboratory observations of the tide-associated rhythms of activity of White Sea intertidal invertebrates, Mya arenaria (Bivalvia) and Gammarus finmarchicus (Amphipoda). The tidal associated activity of these invertebrates could not be estimate as a clear circatidal clock. Gammarus activity could be phase shifted by a 0.5 h exposure to turbulent water twice a day for 2-3 days. Mya's rhythm could be changed by a single drainage of aquariums lasting about 15 min. This kind of timing system may be a relatively primitive evolution feature.

  9. Fine structure of Perkinsus atlanticus n. sp. (Apicomplexa, Perkinsea) parasite of the clam Ruditapes decussatus from Portugal.

    PubMed

    Azevedo, C

    1989-08-01

    A new apicomplexan species, Perkinsus atlanticus, is described from gill filaments of the clam Ruditapes decussatus (Bivalvia) from Portugal, where it causes great mortality. The zoospores differ from those of other species of Perkinsus in size and shape, dimensions, insertion of the 2 flagella, and in the identity of the host. On the other hand, the life cycle stages showed some ultrastructural differences compared with Perkinsus marinus, the only species previously studied in detail. When the clams were parasitized heavily, ultrastructurally similar life cycle stages were found in foot and mantle tissues. PMID:2760774

  10. Are flatfish nursery grounds richer in benthic prey?

    NASA Astrophysics Data System (ADS)

    Wouters, Noémie; Cabral, Henrique N.

    2009-08-01

    The density of macrobenthos was evaluated in the nursery grounds for flatfish of six estuarine systems along the coast of Portugal by comparison with adjacent non-nursery areas. The dry weight and density of macrobenthic fauna were significantly higher in the nursery grounds. Polychaeta, Bivalvia, Oligochaeta and Isopoda were found to be significantly more abundant in the nursery than in the non-nursery grounds. For Isopoda and Bivalvia, total dry weight was also significantly higher in the nursery areas. Correspondence analysis based on density showed that the nursery areas of the different estuaries grouped together relative to non-nursery sites, with a relative similarity in the abundance of Oligochaeta, Spionidae, Amage spp., Scrobicularia plana and Cerastoderma edule. Taking into consideration the generally opportunistic feeding ecology and low dietary selectivity of the flatfish species, the results indicated higher prey availability in the nursery grounds of the Portuguese estuaries, an important factor contributing to the quality of these areas. The relatively high macrobenthic productivity in the nursery areas might be linked to physical and biological interactions favouring the recruitment and maintenance of the communities.

  11. The complete mitochondrial genome of the hard clam Meretrix meretrix.

    PubMed

    He, Chong-Bo; Wang, Jian; Gao, Xiang-Gang; Song, Wen-Tao; Li, Hong-Jun; Li, Yun-Feng; Liu, Wei-Dong; Su, Hao

    2011-06-01

    Veneridae is a diverse, commercially important, and cosmopolitan family. Here we present the complete mitochondrial genome of the hard clam Meretrix meretrix (Bivalvia: Veneridae). The entire mitochondrial genome (mitogenome) sequence of M. meretrix is 19,826 bp in length, and contains 37 genes including 12 protein-coding genes, 2 ribosomal RNAs, and 23 tRNAs. All genes are encoded on the heavy strand. In contrast to the typical animal mitochondrial genome, it lacks the protein-coding gene ATP8, and has only one copy of the tRNA(Ser) gene, but three duplications of the tRNA(Gln), which is the first report among the present molluscan mtDNAs. We observed that the gene arrangement between M. meretrix and M. petechialis is same except one more tRNAGln gene in M. meretrix., and the sequence similarity is as high as 99%, indicating that M. petechialis and M. meretrix could be treated as a junior synonym of M. meretrix. Maximum Likelihood and Bayeslan analysis of 12 concatenated protein-coding amino acid sequences place the Unionidae as a sister group to other bivalves, which reflects the general opinion that the Unionidae deverged very early in Bivalvia evolution. PMID:21086173

  12. Hispaniolan Hemilophini (Coleoptera, Cerambycidae, Lamiinae)

    PubMed Central

    Lingafelter, Steven W.

    2013-01-01

    Abstract The Tribe Hemilophini (Lamiinae) is reviewed for Hispaniola and an identification key is provided. Fifteen species are now known from the island, including one new species of Adesmus (Adesmus fortunei from Pedernales and La Vega Provinces, Dominican Republic), one new species of Oedudes (Oedudes anulatus from Peravia and La Vega Provinces, Dominican Republic), and five new species of Calocosmus (Calocosmus contortus from San Cristóbal Province, Calocosmus punctatus from Peravia Province, Calocosmus rawlinsi from Elías Piña Province, Calocosmus robustus from La Vega Province, and Calocosmus thonalmus from La Altagracia Province, all in the Dominican Republic). Oedudes and Adesmus are new island and country records for Hispaniola and Dominican Republic, respectively. Calocosmus holosericeus Gahan is a new synonym of Calocosmus janus Bates. In addition to the new species, five new country records and four new island records are presented for Calocosmus. PMID:23653499

  13. [Chemical properties and enzyme activities of rhizosphere and non-rhizosphere soils under six Chinese herbal medicines on Mt. Taibai of Qinling Mountains, Northwest China].

    PubMed

    Meng, Ling-Jun; Geng, Zeng-Chao; Yin, Jin-Yan; Wang, Hai-Tao; Ji, Peng-Fei

    2012-10-01

    This paper studied the chemical properties and enzyme activities of rhizosphere and non-rhizosphere soils in different habitats of six Chinese herbal medicines, including Pyrola decorata, Cephalotaxus fortunei, Polygonatum odoratum, Potentilla glabra, Polygonum viviparum, and Potentilla fruticosa, on the Mt. Taibai of Qinling Mountains. In the rhizosphere soils of the herbs, the contents of soil organic matter, total nitrogen, available nitrogen, and available phosphorus and the soil cation exchange capacity (CEC) were higher, presenting an obvious rhizosphere aggregation, and the soil enzyme activities also showed an overall stronger characteristics, compared with those in non-rhizosphere soils. The soil organic matter, total nitrogen, and total phosphorus contents in the rhizosphere soils had significant positive correlations with soil neutral phosphatase activity, and the soil CEC had significant positive correlations with the activities of soil neutral phosphatase and acid phosphatase. In the non-rhizosphere soils, the soil organic matter and total nitrogen contents had significant positive correlations with the activities of soil urease, catalase and neutral phosphatase, and the soil CEC showed a significant positive correlation with the activities of soil urease, catalase, neutral phosphatase and acid phosphatase. The comprehensive fertility level of the rhizosphere soils was higher than that of the non-rhizosphere soils, and the rhizosphere and non-rhizosphere soils of P. fruticosa, P. viviparum, and P. glabra had higher comprehensive fertility level than those of P. decorata, P. odoratum and C. fortunei. In the evaluation of the fertility levels of rhizosphere and non-rhizosphere soils under the six Chinese herbal medicines, soil organic matter content and CEC played important roles, and soil neutral phosphatase could be the preferred soil enzyme indicator. PMID:23359927

  14. [Seasonal release characteristics of Ca, Mg and Mn of foliar litter of six tree species in subtropical evergreen broadleaved forest].

    PubMed

    Ma, Zhi-liang; Gao, Shun; Yang, Wan-qin; Wu, Fu-zhong

    2015-10-01

    Seasonal release dynamics of Ca, Mg and Mn during decomposition of foliar litter of Pinus massoniana, Cryptomeria fortunei, Cunninghamia lanceolata, Cinnamomum camphora, Toona ciliate, and Quercus acutissima were investigated in subtropical evergreen broad-leaved forest employing the method of litterbag. After one-year decomposition, the release rates of Ca, Mg and Mn in foliar litter of the studied tree species ranged from -13.8% to 92.3%, from 4.0% to 64.8%, and from 41.6% to 81.1%, respectively. Ca dynamics in foliar litter of P. massoniana, C. camphora exhibited the pattern of accumulating early and releasing later, while that of the other four tree species showed direct release. Similarly, the dynamics of Mg released from foliar litter of C. camphora showed the pattern of accumulating early and then releasing, while that of the other five tree species exhibited continuous release. Meanwhile, the dynamics of Mn released from foliar litter of C. fortunei and T. ciliate exhibited early accumulation, and subsequent release, while that of the other four tree species showed continuous release. The releases of Ca, Mg and Mn in foliar litter were greatly influenced by seasonal rainfall, and varied with tree species. Furthermore, the rates and amounts of Ca, Mg and Mn released from foliar litter were higher in rainy season than in dry season. In conclusion, the initial nutrient concentrations and precipitation were two key factors influencing the release dynamics of Ca, Mg and Mn during decomposition of foliar litter in the subtropical evergreen broad-leaved forest. PMID:26995897

  15. "Recent" macrofossil remains from the Lomonosov Ridge, central Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Le Duc, Cynthia; de Vernal, Anne; Archambault, Philippe; Brice, Camille; Roberge, Philippe

    2016-04-01

    The examination of surface sediment samples collected from 17 sites along the Lomonosov Ridge at water depths ranging from 737 to 3339 meters during Polarstern Expedition PS87 in 2014 (Stein, 2015), indicates a rich biogenic content almost exclusively dominated by calcareous remains. Amongst biogenic remains, microfossils (planktic and benthic foraminifers, pteropods, ostracods, etc.) dominate but millimetric to centrimetric macrofossils occurred frequently at the surface of the sediment. The macrofossil remains consist of a large variety of taxa, including gastropods, bivalvia, polychaete tubes, scaphopods, echinoderm plates and spines, and fish otoliths. Among the Bivalvia, the most abundant taxa are Portlandia arctica, Hyalopecten frigidus, Cuspidaria glacilis, Policordia densicostata, Bathyarca spp., and Yoldiella spp. Whereas a few specimens are well preserved and apparently pristine, most mollusk shells displayed extensive alteration features. Moreover, most shells were covered by millimeter scale tubes of the serpulid polychaete Spirorbis sp. suggesting transport from low intertidal or subtidal zone. Both the ecological affinity and known geographic distribution of identified bivalvia as named above support the hypothesis of transportation rather than local development. In addition to mollusk shells, more than a hundred fish otoliths were recovered in surface sediments. The otoliths mostly belong to the Gadidae family. Most of them are well preserved and without serpulid tubes attached to their surface, suggesting a local/regional origin, unlike the shell remains. Although recovered at the surface, the macrofaunal assemblages of the Lomonosov Ridge do not necessarily represent the "modern" environments as they may result from reworking and because their occurrence at the surface of the sediment may also be due to winnowing of finer particles. Although the shells were not dated, we suspect that their actual ages may range from modern to several thousands of

  16. Depositional environment, foraminifer content and ESR ages of Quaternary Gediz Delta Sediments (Eastern Aegean Sea, İzmir-Western Turkey)

    NASA Astrophysics Data System (ADS)

    Gökçe Benli, Ekin; Aydın, Hülya; İşintek, İsmail; Engin, Birol; Şengöçmen, Berna

    2016-04-01

    Sediments and fossil content of Gediz Delta (Eastern Aegean Sea - İzmir) were examined based on the drilling core samples of the YSK-C and SK-246 drilling. W-SW part of the Delta is represented by continental delta sediments up to 6 meters and shallow marine detritic sediments up to 35 meters in the YSK-C drilling. Continental part consists of an soiled, graveled, muddy and sandy sediment in terms of rich organic substance. As for marine part, it consists of bioclast, muddy, fine graveled sand and by repetition of pebble, sand and bioclast bearing mud layers. Bioclasts comprise of bivalvia, echinoid, ostracod, gastropod, foramifer and bryozoa fragments. Benthic foraminiferal fauna determinated in the marine levels are represented by 55 bethic, 2 planktonic species. These foraminifers and bioclasts reflect that the W-SW part of the delta, has been occured in marine conditions between 8-31m deep. E-NE part of the delta is generally represented by continental sediments up to 43.5m in SK-246 drilling. In addition, it includes marine levels in 18-19 m, 23-24 m and 36-37,5 m intervals. Continental sediments of E-NE part is generally represented by calcareous and sandy mud rocks which mostly includes ash, tuff, and pebble derived from Neogene volcanic rocks. As for marine levels, it is composed of calcareous mud stones and calcareous clay stones including very thin gastropod, bivalvia and ostracod in 18- 19 and 36-37.5 meters whereas it is represented by sandy mud stones including a great deal of bentic foraminifer, bivalvia, bryozoa, echinoid, gastropod in 23-24 metres. Thus show that E-NE part of the delta is usually in continental condition but it is occasionally covered by sea. In aging studies of YSK-C core done by ESR method, age of 8-9 m interval is determined to be 11. 376 ± 0,067 Ka; however ages of 10-11m and 24-25 m intervals are revealed to be 16.466 ± 0,016 Ka and 15.344 ± 0,021 Ka respectively; finally age of 25-26 m interval is found to be 19.995 ± 0

  17. Diet of Lipophrys pholis (L.) (Teleostei, Blenniidae) in Cantabrian coastal waters (Spain)

    NASA Astrophysics Data System (ADS)

    Mazé, Raquel A.; Domínguez, Josefa; Pérez-Cardenal, David

    1999-07-01

    Between February and December 1988, a total of 261 specimens of Lipophrys pholis were caught in eleven intertidal pools on the western coast of Asturias. This blenniid species mainly feeds on different groups of invertebrates, although algal remains also appear. Mollusca is the most highly represented taxon with the largest number of prey being Gastropoda, followed by Bivalvia and, to a lesser degree, Polyplacophora. Crustacea is well represented by Cirripedia. Isopoda also stands out and Amphipoda, Tanaidacea and Decapoda appear sporadically. Temporal diet analysis throughout the year shows no great differences. Likewise, a great similarity was observed among the feeding of L. pholis specimens collected in pools at a different tidal level, of variable size and with different algal cover. Changes in diet are appreciable as size increases, especially from a length of 6 cm on.

  18. [Bounds of change in unsaturation index of fatty acid composition of phospholipids at adaptation of molluscs to biogenic and abiogenic factors of external medium].

    PubMed

    Chebotareva, M A; Zabelinskiĭ, S A; Shukoliukova, E P; Krivchenko, A I

    2011-01-01

    Comparative study of fatty acid composition of total phospholipids, as well as of phosphatidylcholine and phosphatidylethanolamine from hepatopancreas and leg muscle was performed on several representatives of gasteropods (Gastropoda) molluscs and bivalve (Bivalvia) mussel (Mytilus edulus). The objects of our study were marine litorins (Littorina saxsatilis) adapted to different temperature conditions of White Sea and Barents Sea, freshwater lymnaea (Lymnaea stagnalis) infested by Trematoda and mussels from White Sea and Black Sea. It was shown that depending on the existence conditions of studied tissue or lipid, the maximal change is observed in the percentage of saturated acids (4-83 %), the percentage of unsaturated acids was less expressed (1-14 %) and the changes in unsaturation index (UI) did not exceed 20 % on average. It was supposed that observed quantitative bounds of UI change under the action of different external factors is utmost for maintenance of membrane fluidity necessary for normal vital activity of cell, particularly in studied ectothermic molluscs. PMID:22145319

  19. Aspects of Biodeterioration of Lapideous Submerged Artefacts: 3d Methodologies Application

    NASA Astrophysics Data System (ADS)

    Ricci, S.; Antonelli, F.; Sacco Perasso, C.

    2015-04-01

    Submerged stone archaeological artefacts are bioeroded by endolithic microbiota (cyanobacteria, algae and fungi) and macroborers (Porifera, Bivalvia and Sipuncula). Optical microscope and SEM observations permit to analyse the bioerosion traces and to identify bioeroders. Data obtained with these techniques cannot be used to estimate volumes of material bioeroded. This aspect require the need to collect three-dimensional, close-range data from artefact. In this work we illustrate two 3D imaging techniques used to study bioerosion phenomena of underwater Cultural Heritage. In particular Digital Video Microscope permit the elaboration of 3D images, which are widely employed for close-range acquisitions. Underwater Laser Scanner documents the in situ degradation of submerged artefacts. This research aims to sensitize specialist figures in the study 3D offering a starting point for future collaborations that could lead to interesting results.

  20. Hemocyanin respiratory pigment in bivalve mollusks

    SciTech Connect

    Morse, M.P.; Meyhoefer, E.; Otto, J.J.; Kuzirian, A.M.

    1986-03-14

    Hemocyanins, high molecular weight oxygen-binding proteins, were identified in two species of protobranch bivalve mollusks, Acila castrensis and Yoldia limatula. Although hemocyanins have been reported in chitons, gastropods, and cephalopods, they have not been observed in the Class Bivalvia. In A. castrensis the dissociation products of hemocyanin, characterized by gel electrophoresis, had a subunit molecular weight of approximately 250K. Negatively stained preparations of extracted hemocyanin formed protein aggregates in the shape of cylinders measuring 35 by 38 nanometers. X-ray microanalysis of hemocyanin aggregates in thin sections of Y. limatula demonstrated the presence of copper in the molecules. The discovery of hemocyanin in the protobranchs reinforces the primitive nature of the taxon and is further evidence that the major molluscan classes have a common ancestry. 14 references, 3 figures.

  1. Ultrastructural description of the spore maturation stages of the clam parasite Minchinia tapetis (Vilela, 1951) (Haplosporida: Haplosporidiidae).

    PubMed

    Azevedo, C

    2001-07-01

    The fine structure of maturing spores of a haplosporidian parasite found in the gill, mantle and foot tissues of Ruditapes decussatus L. (Mollusca, Bivalvia), a species of commercial importance in Portugal, is described. When observed free in suspension, immature spores exhibit one or two epispore cytoplasmic extensions (ECE) which constitute a projection of a portion of the exosporoplasm, sometimes without ultrastructural organisation, surrounded by the plasmalemma. Free spores observed by light microscopy (LM) after 3-5 days of incubation in filtered sea-water exhibit no ECE attached to the spore wall. The mature spore is ovoid to ellipsoid, operculate, uninucleate and measures c. 4.8 microm long and c. 3.9 microm wide. The spore shape and size and the identity of the host living in the same geographical region suggest that this species is the same as previously described using LM observations as Haplosporidium tapetis Vilela, 1951 and later transferred to Minchinia Labbé, 1896. PMID:11466479

  2. Foods of Spectacled Eiders Somateria fischeri in the Bering Sea, Alaska

    USGS Publications Warehouse

    Petersen, M.R.; Piatt, J.F.; Trust, K.A.

    1998-01-01

    The winter diet of Spectacled Eiders living in marine habitats is known only from two individuals described by Cottam (1939). Here we examine marine diets from 36 stomachs collected near St. Lawrence Island, Bering Sea, Alaska, during May-June in 1987 and 1992. All Spectacled Eiders ate Mollusca, including Gastropoda (snails; frequency of occurrence 20.0%; sole taxon 0.0%) and Bivalvia (bivalves; 80.0%; 48.0%), and Crustacea (barnacles, amphipods and crabs; 30.6%; 0.0%). One bird ate a cod. The predominant species group eaten was Macoma Clams (72.0%; 36.0%). Prey species of Spectacled Eiders occur predominantly in waters 25-60 m deep in the Bering Sea. To obtain these prey, especially the bivalves, on the winter area Spectacled Eiders must forage in waters exceeding 40 m. We speculate that Spectacled Eiders regularly forage at depths of 45-70 m throughout winter.

  3. Mytilid mussels: global habitat engineers in coastal sediments

    NASA Astrophysics Data System (ADS)

    Buschbaum, Christian; Dittmann, Sabine; Hong, Jae-Sang; Hwang, In-Seo; Strasser, Matthias; Thiel, Martin; Valdivia, Nelson; Yoon, San-Pil; Reise, Karsten

    2009-03-01

    Dense beds of mussels of the family Mytilidae occur worldwide on soft-bottoms in cold and warm temperate coastal waters and have usually been considered hot spots of biodiversity. We examined intertidal mussel beds at four distant locations around the globe with the same sampling method, to find out whether this “hot spot” designation holds universally. We studied species assemblages within the matrices of byssally interconnected mussels engineered by Mytilus edulis in the North Sea, by mixed Perumytilus purpuratus and Mytilus chilensis at the southern Chilean coast, by Musculista senhousia in the Yellow Sea and by Xenostrobus inconstans at the coast of southern Australia. In all cases, species assemblages inside mussel beds were significantly different from those outside with many species being restricted to one habitat type. However, species richness and diversity were not generally higher in mussel beds than in ambient sediments without mussels. In the North Sea ( M. edulis) and at the Chilean coast ( P. purpuratus, M. chilensis), mussel beds have markedly higher species numbers and diversities than surrounding sediments, but this was not the case for mussel beds in Australia ( X. inconstans) and the Yellow Sea ( M. senhousia) where numbers of associated species were only slightly higher and somewhat lower than in adjacent sediments, respectively. In conclusion, although soft bottom mytilid mussels generally enhance habitat heterogeneity and species diversity at the ecosystem level, mussel beds themselves are not universal centres of biodiversity, but the effects on associated species are site specific.

  4. [Abundance and richness of mollusks and crustaceans associated to the submerged roots of red mangrove (Rhizophora mangle) at Bocaripo Lagoon, Sucre, Venezuela].

    PubMed

    Cedeño, Jennellis; Jiménez Prieto, Mayré; Pereda, Luisana; Allen, Thays

    2010-10-01

    Mangrove roots are important habitats for many species. The abundance and richness of mollusks and crustaceans associated with the roots demerged of Rhizophora mangle was studied. The samples were gathered between February 2005 and January 2006, in Bocaripo lagoon, north coast of Sucre state, Venezuela. Five stations were established inside the lagoon; on every station two roots were chosen at random, put in plastic bags and scraped. The associated organisms were separated by taxa and fixed in 10% formaldehyde. One thousand ninety two specimens of mollusks, distributed in two classes: Bivalve and Gastropod were collected. Bivalve was the most abundant with 943 individuals. The most representative family was Mytilidae with 6 species, being Musculus lateralis the dominant species. The crustaceans were represented by 372 organisms, belonging to the class Malacostraca, where Panopeus herbstii (169 ind.) was the most abundant species. The families Panopeidae, Porcellanidae and Majidae had the highest number of species. Maximum abundance was in February (224 ind.), with a richness of 25 species and the minimums in November (45 ind.) and a richness of 12 species. The stations 1 and 5 presented the major abundance and richness of organisms, which could be related to environmental conditions favorable, as the major availability of microhabitats and nourishing offer; on the contrary the station 4, presented a more inhospitable environment, due to the high values in the salinity and temperature, which contributes with the minor abundance and richness of the present species. PMID:21302531

  5. Expression patterns of mRNAs for methanotrophy and thiotrophy in symbionts of the hydrothermal vent mussel Bathymodiolus puteoserpentis.

    PubMed

    Wendeberg, Annelie; Zielinski, Frank U; Borowski, Christian; Dubilier, Nicole

    2012-01-01

    The hydrothermal vent mussel Bathymodiolus puteoserpentis (Mytilidae) from the Mid-Atlantic Ridge hosts symbiotic sulfur- and methane-oxidizing bacteria in its gills. In this study, we investigated the activity and distribution of these two symbionts in juvenile mussels from the Logatchev hydrothermal vent field (14°45'N Mid-Atlantic Ridge). Expression patterns of two key genes for chemosynthesis were examined: pmoA (encoding subunit A of the particulate methane monooxygenase) as an indicator for methanotrophy, and aprA (encoding the subunit A of the dissimilatory adenosine-5'-phosphosulfate reductase) as an indicator for thiotrophy. Using simultaneous fluorescence in situ hybridization (FISH) of rRNA and mRNA we observed highest mRNA FISH signals toward the ciliated epithelium where seawater enters the gills. The levels of mRNA expression differed between individual specimens collected in a single grab from the same sampling site, whereas no obvious differences in symbiont abundance or distribution were observed. We propose that the symbionts respond to the steep temporal and spatial gradients in methane, reduced sulfur compounds and oxygen by modifying gene transcription, whereas changes in symbiont abundance and distribution take much longer than regulation of mRNA expression and may only occur in response to long-term changes in vent fluid geochemistry. PMID:21734728

  6. Diversity and distribution of methane-oxidizing microbial communities associated with different faunal assemblages in a giant pockmark of the Gabon continental margin

    NASA Astrophysics Data System (ADS)

    Cambon-Bonavita, M. A.; Nadalig, T.; Roussel, E.; Delage, E.; Duperron, S.; Caprais, J. C.; Boetius, A.; Sibuet, M.

    2009-12-01

    A giant 800-m-diameter pockmark named REGAB was discovered on the Gabon continental margin actively emitting methane at a water depth of 3200 m. The microbial diversity in sediments from four different assemblages of chemosynthetic organisms, Mytilidae, Vesicomyidae, Siboglinidae and a bacterial mat, was investigated using comparative 16S rRNA gene sequence analysis. Aggregates of anaerobic methanotrophic archaea (ANME-2) and bacteria of the Desulfosarcina/Desulfococcus cluster were found in all four chemosynthetic habitats. Fluorescence in situ hybridization targeting the ANME-2/ Desulfosarcina/Desulfococcus aggregates showed their presence few centimeters (3-5 cm) below the surface of sediment. 16S rRNA gene sequences from all known marine ANME groups were detected in the pockmark sediments, as well as from both known bacterial partners. The archaeal diversity was limited to the ANME cluster for all investigated samples. The bacterial diversity included members of the Proteobacteria, Bacilliales, Cytophaga/Flavobacteria, Verrucomicrobia, JS1 and Actinobacteria clusters. Bacterial 16S rRNA gene sequences related to those of known sulphide-oxidizing symbionts were recovered from tissues of several invertebrates including vesicomyid clams and siboglinid tubeworms of REGAB.

  7. ROV study of a giant pockmark on the Gabon continental margin

    NASA Astrophysics Data System (ADS)

    Ondréas, H.; Olu, K.; Fouquet, Y.; Charlou, J. L.; Gay, A.; Dennielou, B.; Donval, J. P.; Fifis, A.; Nadalig, T.; Cochonat, P.; Cauquil, E.; Bourillet, J. F.; Moigne, M. Le; Sibuet, M.

    2005-11-01

    A giant, 800-m wide pockmark, called Regab, was discovered along the Equatorial African margin at 3160-m water depth and was explored by remote operated vehicle (ROV) as part of the Zaiango (1998-2000) and Biozaire (2001-2003) projects carried out conjointly by TOTAL and a number of French research institutes. A microbathymetric map obtained using the ROV sensors shows that the pockmark actually consists of a cluster of smaller pockmarks aligned N70 along a 15-m deep depression. Methane was recorded all over the pockmark, the highest values along the axis of the depression where massive carbonate crusts and dense seep communities were also found. Several faunal species belong to the Vesicomyidae and Mytilidae bivalve families, as well as to Siboglinidae (Vestimentifera) tubeworms. Preliminary analyses confirm their association with symbiotic bacteria, thus documenting their dependence on fluid seeps. The pockmark appears to be related to an infilled channel, visible on the seismic data 300 m below the seafloor, which may act as a reservoir for biogenic fluids supplied to the trap from the surrounding sediments.

  8. Composition and distribution of bivalves of the abyssal plain adjacent to the Kuril-Kamchatka Trench (Pacific Ocean)

    NASA Astrophysics Data System (ADS)

    Kamenev, Gennady M.

    2015-01-01

    The KuramBio German-Russian deep-sea expedition ("Sonne", 2012) revealed a rich fauna of bivalves (55 species belonging to 21 families) on the abyssal plain (4861-5787 m) adjacent to the Kuril-Kamchatka Trench. Per station species richness varied from 18 to 33 species. The richest families were Cuspidariidae (7 species), Tindariidae (6 species), Thyasiridae (6 species), and Xylophagidae (5 species). The families Nuculidae, Malletidae, Yoldiidae, Mytilidae, Protocuspidariidae, and Verticordiidae were represented by a single species. Representatives of the family Siliculidae were recorded in the northwestern Pacific for the first time. Thirteen species (23.6%) were most common in the investigated northwestern Pacific region. Nine species (16.4%) were only found at one of the stations. Eight species (14.5%) are first records for the northwestern Pacific, of which Yoldiella cf. jeffreysi (Hidalgo, 1877), Pristigloma cf. albaSanders and Allen, 1973, and Syssitomya cf. pourtalesianaOliver, 2012 were previously known only for the Atlantic Ocean. The high diversity and richness of the bivalve fauna on the abyssal plain in the Kuril-Kamchatka Trench area may be connected to the favorable feeding conditions in this, one of the most highly productive areas of the Pacific Ocean.

  9. Screening of inhibitors of glycogen synthase kinase-3β from traditional Chinese medicines using enzyme-immobilized magnetic beads combined with high-performance liquid chromatography.

    PubMed

    Li, Yunfang; Xu, Jia; Chen, Yu; Mei, Zhinan; Xiao, Yuxiu

    2015-12-18

    Glycogen synthase kinase-3β (GSK-3β) was immobilized on magnetic beads (MBs) by affinity method for the first time. The enzyme-immobilized MBs were coupled with high-performance liquid chromatography-ultraviolet (HPLC-UV) technique to establish a cost-effective and reliable method for screening of inhibitors of GSK-3β. A peptide substrate of GSK-3β containing a tyrosine residue was employed since it can be sensitively detected by UV detector at 214nm. The substrate and its phosphorylated product were separated by baseline within 10min. The enzyme activity was determined by the quantification of peak area of the product. Parameters including enzyme immobilization, enzyme reaction and the performance of immobilized-enzyme were investigated. The immobilized enzyme can be reused for 10 times and remain stable for 4 days at 4°C. The inhibitory activities of extracts of 15 traditional Chinese medicines (TCMs) were screened. As a result, three of them including Euonymus fortunei, Amygdalus communis and Garcinia xanthochymus were found possessing high inhibitory activities (inhibition rate >90%). From G. xanthochymus, a new inhibitor of GSK-3β, fukugetin, was discovered with an IC50 value of 3.18±0.07μM. Enzyme kinetics and molecular docking experiments further revealed the inhibitory mechanism, indicating fukugetin was a non-ATP competitive inhibitor interacting with the phosphate recognizing substrate binding site of GSK-3β. PMID:26610618

  10. Quantitative genetic analysis of subspecific differences in body shape in the snail-feeding carabid beetle Damaster blaptoides

    PubMed Central

    Konuma, J; Sota, T; Chiba, S

    2013-01-01

    A dimorphic pattern of macrocephalic (wide, short) and stenocephalic (narrow, long) body shapes is observed in snail-feeding carabid beetles globally. The former exhibits high performance in crushing snail shells with powerful jaws, whereas the latter specializes in eating snails' soft body directly by inserting the head into the shell. In the snail-feeding species Damaster blaptoides, the subspecies D. b. capito has a wide, short forebody, and D. b. fortunei has a narrow, long forebody. They exhibit distinct morphologies despite their geographic and phylogenetic proximity. To examine the genetic basis of the morphological differences between these two subspecies, we conducted quantitative genetic analyses by crossing these subspecies and producing F1 and backcross hybrids. The hybrids had body shapes intermediate between the parental subspecies. The variation between wide, short and narrow, long forebodies was based on negative genetic correlations between width and length of the head and thorax. Between one and eight genetic factors were involved in the morphological differences between subspecies. We suggest that the morphological integration of forebody parts in a small number of loci has facilitated the marked morphological diversification between subspecies of D. blaptoides. PMID:23073391

  11. Field attraction of the vine weevil Otiorhynchus sulcatus to kairomones.

    PubMed

    Van Tol, Robert W H M; Bruck, Denny J; Griepink, Frans C; De Kogel, Willem Jan

    2012-02-01

    Root weevils in the genus Otiorhynchus are cited as one of the most important pests in the major nursery and small fruit production areas throughout the United States, western Canada, and northern Europe. A major problem in combating weevil attack is monitoring and timing of control measures. Because of the night-activity of the adult weevils growers do not observe the emerging weevils in a timely manner and oviposition often starts before effective control measures are taken. Several vine weevil electroantennogram-active plant volatiles were identified from a preferred host plant, Euonymus fortunei. Main compounds evoking antennal responses on the weevils' antennae were (Z)-2-pentenol, (E)-2-hexenol, (Z)-3-hexenol, methyl benzoate, linalool, (E)-4,8-dimethyl-1,3,7-nonatriene, methyl eugenol, and (E, E)-alpha-farnesene. Several of these compounds were tested alone and in mixtures on attractiveness for the vine weevil Otiorhynchus sulcatus (F.) in field-grown strawberry in Oregon. O. sulcatus were attracted to (Z)-2-pentenol (approximately 3 x more than control) and a 1:1 ratio mixture of (Z)-2-pentenol and methyl eugenol (4.5 x more than control). This is the first report of field-active attractants for O. sulcatus which holds promise for the development of new monitoring strategies for growers in the near future. PMID:22420269

  12. A Spatial Modeling Approach to Predicting the Secondary Spread of Invasive Species Due to Ballast Water Discharge

    PubMed Central

    Sieracki, Jennifer L.; Bossenbroek, Jonathan M.; Chadderton, W. Lindsay

    2014-01-01

    Ballast water in ships is an important contributor to the secondary spread of invasive species in the Laurentian Great Lakes. Here, we use a model previously created to determine the role ballast water management has played in the secondary spread of viral hemorrhagic septicemia virus (VHSV) to identify the future spread of one current and two potential invasive species in the Great Lakes, the Eurasian Ruffe (Gymnocephalus cernuus), killer shrimp (Dikerogammarus villosus), and golden mussel (Limnoperna fortunei), respectively. Model predictions for Eurasian Ruffe have been used to direct surveillance efforts within the Great Lakes and DNA evidence of ruffe presence was recently reported from one of three high risk port localities identified by our model. Predictions made for killer shrimp and golden mussel suggest that these two species have the potential to become rapidly widespread if introduced to the Great Lakes, reinforcing the need for proactive ballast water management. The model used here is flexible enough to be applied to any species capable of being spread by ballast water in marine or freshwater ecosystems. PMID:25470822

  13. Site-Specific N-Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data.

    PubMed

    Baker, Margaret R; Tabb, David L; Ching, Travers; Zimmerman, Lisa J; Sakharov, Ivan Y; Li, Qing X

    2016-06-01

    Plant secretory (Class III) peroxidases are redox enzymes that rely on N-glycosylation for full enzyme activity and stability. Peroxidases from palm tree leaves comprise the most stable and active plant peroxidases characterized to date. Herein, site-specific glycosylation and microheterogeneity of windmill palm tree (Trachycarpus fortunei) peroxidase are reported. The workflow developed in this study includes novel tools, written in R, to aid plant glycan identification, pGlycoFilter, for annotation of glycopeptide fragmentation spectra, gPSMvalidator, and for relative quantitation of glycoforms, glycoRQ. Mass spectrometry analysis provided a detailed glycosylation profile at the 13 sites of N-linked glycosylation on windmill palm tree peroxidase. Glycan microheterogeneity was observed at each site. Site Asn211 was the most heterogeneous and contained 30 different glycans. Relative quantitation revealed 90% of each glycosylation site was occupied by three or fewer glycans, and two of the 13 sites were partially unoccupied. Although complex and hybrid glycans were identified, the majority of glycans were paucimannosidic, characteristic of plant vacuolar glycoproteins. Further studies pertaining to the glycan structure-activity relationships in plant peroxidases can benefit from the work outlined here. PMID:27151270

  14. Cold seep communities in the deep eastern Mediterranean Sea: composition, symbiosis and spatial distribution on mud volcanoes

    NASA Astrophysics Data System (ADS)

    Olu-Le Roy, Karine; Sibuet, Myriam; Fiala-Médioni, Aline; Gofas, Serge; Salas, Carmen; Mariotti, André; Foucher, Jean-Paul; Woodside, John

    2004-12-01

    Two mud volcano fields were explored during the French-Dutch MEDINAUT cruise (1998) with the submersible NAUTILE, one south of Crete along the Mediteranean Ridge at about 2000 m depth (Olimpi mud field) and the other south of Turkey between 1700 and 2000 m depth (Anaximander mud field) where high methane concentrations were measured. Chemosynthetic communities were observed and sampled on six mud volcanoes and along a fault scarp. The communities were dominated by bivalves of particularly small size, belonging to families commonly found at seeps (Mytilidae, Vesicomyidae, Thyasiridae) and to Lucinidae mostly encountered in littoral sulfide-rich sediments and at the shallowest seeps. Siboglinid polychaetes including a large vestimentiferan Lamellibrachia sp. were also associated. At least four bivalve species and one siboglinid are associated with symbiotic chemoautotrophic bacteria, as evidenced by Transmission Electronic Microscopy and isotopic ratio measurements. Among the bivalves, a mytilid harbors both methanotrophic and sulfide-oxidizing bacteria. Video spatial analysis of the community distribution on three volcanoes shows that dense bivalve shell accumulations (mainly lucinids) spread over large areas, from 10% to 38% of the explored areas (2500-15000 m 2) on the different volcanoes. Lamellibrachia sp. had different spatial distribution and variable density in the two mud volcano fields, apparently related with higher methane fluxes in the Anaximander volcanoes and maybe with the instability due to brines in the Olimpi area. The abundance and richness of the observed chemosynthetic fauna and the size of some of the species contrast with the poverty of the deep eastern Mediterranean. The presence of a specialized fauna, with some mollusk genera and species shared with other reduced environments of the Mediterranean, but not dominated by the large bivalves usually found at seeps, is discussed.

  15. An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Duperron, S.; Gaudron, S. M.; Rodrigues, C. F.; Cunha, M. R.; Decker, C.; Olu, K.

    2013-05-01

    Deep-sea bivalves found at hydrothermal vents, cold seeps and organic falls are sustained by chemosynthetic bacteria that ensure part or all of their carbon nutrition. These symbioses are of prime importance for the functioning of the ecosystems. Similar symbioses occur in other bivalve species living in shallow and coastal reduced habitats worldwide. In recent years, several deep-sea species have been investigated from continental margins around Europe, West Africa, eastern Americas, the Gulf of Mexico, and from hydrothermal vents on the Mid-Atlantic Ridge. In parallel, numerous, more easily accessible shallow marine species have been studied. Herein we provide a summary of the current knowledge available on chemosymbiotic bivalves in the area ranging west-to-east from the Gulf of Mexico to the Sea of Marmara, and north-to-south from the Arctic to the Gulf of Guinea. Characteristics of symbioses in 53 species from the area are summarized for each of the five bivalve families documented to harbor chemosynthetic symbionts (Mytilidae, Vesicomyidae, Solemyidae, Thyasiridae and Lucinidae). Comparisons are made between the families, with special emphasis on ecology, life cycle, and connectivity. Chemosynthetic symbioses are a major adaptation to ecosystems and habitats exposed to reducing conditions. However, relatively little is known regarding their diversity and functioning, apart from a few "model species" on which effort has focused over the last 30 yr. In the context of increasing concern about biodiversity and ecosystems, and increasing anthropogenic pressure on oceans, we advocate a better assessment of the diversity of bivalve symbioses in order to evaluate the capacities of these remarkable ecological and evolutionary units to withstand environmental change.

  16. An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Duperron, S.; Gaudron, S. M.; Rodrigues, C. F.; Cunha, M. R.; Decker, C.; Olu, K.

    2012-11-01

    Deep-sea bivalves found at hydrothermal vents, cold seeps and organic falls are sustained by chemosynthetic bacteria which ensure part or all of their carbon nutrition. These symbioses are of prime importance for the functioning of the ecosystems. Similar symbioses occur in other bivalve species living in shallow and coastal reduced habitats worldwide. In recent years, several deep-sea species have been investigated from continental margins around Europe, West Africa, East America, the Gulf of Mexico, and from hydrothermal vents on the Mid-Atlantic Ridge. In parallel, numerous more easily accessible shallow marine species were studied. We here provide a summary of the current knowledge available on chemosymbiotic bivalves in the area ranging west-to-east from the Gulf of Mexico to Marmara Sea, and north-to-south from the Arctic to the Gulf of Guinea. Characteristics of symbioses in 51 species from the area are summarized for each of the five bivalve families documented to harbor chemosynthetic symbionts (Mytilidae, Vesicomyidae, Solemyidae, Thyasiridae and Lucinidae), and compared among families with special emphasis on ecology, life cycle, and connectivity. Chemosynthetic symbioses are a major adaptation to ecosystems and habitats exposed to reducing conditions, yet relatively little is known regarding their diversity and functioning apart from a few "model species" on which effort has focused over the last 30 yr. In the context of increasing concern about biodiversity and ecosystems, and increasing anthropogenic pressure on Oceans, we advocate for a better assessment of bivalve symbioses diversity in order to evaluate the capacities of these remarkable ecological and evolutionary units to withstand environmental change

  17. Changes in Benthos Associated with Mussel (Mytilus edulis L.) Farms on the West-Coast of Scotland

    PubMed Central

    Wilding, Thomas A.; Nickell, Thomas D.

    2013-01-01

    Aquaculture, as a means of food production, is growing rapidly in response to an increasing demand for protein and the over-exploitation of wild fisheries. This expansion includes mussels (family Mytilidae) where production currently stands at 1.5 million tonnes per annum. Mussel culture is frequently perceived as having little environmental impact yet mussel biodeposits and shell debris accumulate around the production site and are linked to changes in the benthos. To assess the extent and nature of changes in benthos associated with mussel farming grab and video sampling around seven mussel farms was conducted. Grab samples were analysed for macrofauna and shell-hash content whilst starfish were counted and the shell-hash cover estimated from video imaging. Shell-hash was patchily distributed and occasionally dominated sediments (maximum of 2116 g per 0.1 m2 grab). Mean shell-hash content decreased rapidly at distances >5 m from the line and, over the distance 1–64 m, decreased by three orders of magnitude. The presence of shell-hash and the distance-from-line influenced macrofaunal assemblages but this effect differed between sites. There was no evidence that mussel farming was associated with changes in macrobenthic diversity, species count or feeding strategy. However, total macrofaunal count was estimated to be 2.5 times higher in close proximity to the lines, compared with 64 m distance, and there was evidence that this effect was conditional on the presence of shell-hash. Starfish density varied considerably between sites but, overall, they were approximately 10 times as abundant close to the mussel-lines compared with 64 m distance. There was no evidence that starfish were more abundant in the presence of shell-hash visible on the sediment surface. In terms of farm-scale benthic impacts these data suggest that mussel farming is a relatively benign way of producing food, compared with intensive fish-farming, in similar environments. PMID:23874583

  18. Changes in sedimentary redox associated with mussel (Mytilus edulis L.) farms on the west-coast of Scotland.

    PubMed

    Wilding, Thomas A

    2012-01-01

    Aquaculture is growing rapidly in response to an increasing demand for protein and the over-exploitation of wild fisheries. Mussel (family Mytilidae) production has doubled over the last decade and currently stands at 1.5 million tones production per annum. Mussels produce organic biodeposits which are dispersed around the production site and, potentially, impact the receiving environment in a number of inter-linked ways. The reported benthic impacts that occur, primarily through the accumulation of these biodeposits and associated organic enrichment, vary widely between studies. The objectives of this research were to determine the nature of the relationship between sediment redox (a proxy for oxygenation) and farm-proximity and covariables whilst accounting for, and quantifying, differences in redox between sites. Sediment cores (N = 159) were taken remotely around a random sample of mussel farms, redox was measured at 10 mm sediment depth and linked to farm-distance and sediment organic/shell content and particle size, using an additive, mixed, weighted regression model. Redox varied considerably between sites and there was a highly significant reduction (50 mV) in redox adjacent to the mussel lines. Redox increased non-linearly with distance, rising rapidly at >7 m from the farm edge. The modest reduction in sediment oxygenation in close proximity to mussel farms reported here suggests that farms located over sediments characterised by pre-existing oxygen stress are likely to exacerbate benthic species impoverishment associated with reducing sedimentary conditions whilst those located over highly oxygenated sediments are likely to increase benthic productivity. PMID:23028817

  19. Continental shelf benthos off Otago Peninsula, New Zealand

    NASA Astrophysics Data System (ADS)

    Probert, P. Keith; Wilson, John B.

    1984-09-01

    Benthic macrofauna of the continental shelf off Otago Peninsula, south-eastern New Zealand (45°51'S, 170°52'E) was surveyed by dredge sampling during 1973-1975. Numerical classification (Canberra metric coefficient and flexible sorting) was used to produce site groups and species groups, and three major benthic communities were recognised: a shallow-water (14-25 m) fauna inhabiting well-sorted fine sand, a mid-shelf fauna (concentrated in the depth range 50-76 m) associated with sediments containing the greatest proportions of gravel and siltclay, and a predominantly sand-bottom fauna occurring mainly on the outer shelf (87-150 m). All station groups were dominated numerically by polychaetes (mean of 36·6-56% of individuals) with Mollusca (13·8-25%) or Crustacea (12·1-19·4%) the next most abundant group. The inshore sand fauna was the most distinct, characteristic elements being the trochid gastropod Antisolarium egenum, an amphipod of the genus Hippomedon and dense patches of the spionid polychaete Spiophanes bombyx. Diagnostic species of the mid-shelf mixed sediments were Lepidonotus jacksoni, Psammolyce antipoda, Lumbrineris brevicirra and Phyllamphicteis foliata (Polychaeta), Terenochiton otagoensis, Micrelenchus caelatus caelatus, Maoricolpus roseus roseus and Zegalerus tenuis (Mollusca), Ampelisca chiltoni (Amphipoda) and Amphipholis squamata (Ophiuroidea). Outer shelf sand stations were faunally less distinct, but among the more characteristic species were Euthalenessa fimbriata, Sigalion sp. and Euchone sp. (Polychaeta) and Gari stangeri (Bivalvia). Several abundant species were widely distributed among station groups, notably Nephtys macroura, Lumbrineris magalhaensis, Phyllochaetopterus socialis and Owenia fusiformis (Polychaeta) and Nucula nitidula and Tawera spissa (Bivalvia). Free-living lunulitiform Bryozoa of the genus Otionella were a characteristic component of inner and outer shelf sand faunas, and their inshore penetration probably marks

  20. Quantitative proteomics of heavy metal stress responses in Sydney rock oysters.

    PubMed

    Muralidharan, Sridevi; Thompson, Emma; Raftos, David; Birch, Gavin; Haynes, Paul A

    2012-03-01

    Currently, there are few predictive biomarkers in key biomonitoring species, such as oysters, that can detect heavy metal pollution in coastal waterways. Several attributes make oysters superior to other organisms for positive biomonitoring of heavy metal pollution. In particular, they are filter feeders with a high capacity for bioaccumulation. In this study, we used two proteomics approaches, namely label-free shotgun proteomics based on SDS-PAGE gel separation and gas phase fractionation, to investigate the heavy metal stress responses of Sydney rock oysters. Protein samples were prepared from haemolymph of oysters exposed to 100 μg/L of PbCl(2), CuCl(2), or ZnCl(2) for 4 days in closed aquaria. Peptides were identified using a Bivalvia protein sequence database, due to the unavailability of a complete oyster genome sequence. Statistical analysis revealed 56 potential biomarker proteins, as well as several protein biosynthetic pathways to be greatly impacted by metal stress. These have the potential to be incorporated into bioassays for prevention and monitoring of heavy metal pollution in Australian oyster beds. The study confirms that proteomic analysis of biomonitoring species is a promising approach for assessing the effects of environmental pollution, and our experiments have provided insights into the molecular mechanisms underlying oyster stress responses. PMID:22539440

  1. Diet shifts of lesser scaup are consistent with the spring condition hypothesis

    USGS Publications Warehouse

    Anteau, M.J.; Afton, A.D.

    2006-01-01

    We compared diets of lesser scaup (Aythya affinis (Eyton, 1838)) in the springs of 2000 and 2001 to those reported in the 1970s and the 1980s to determine whether forage quality has declined as predicted by the spring condition hypothesis. In Minnesota, we found that the current aggregate percentage of Amphipoda (an important food item) in lesser scaup diets was 94% lower than that reported from the same locations in the 1980s. Current mean individual prey mass of Amphipoda and Bivalvia in Minnesota were 86.6% and 85.1% lower than historical levels, respectively. In Manitoba, current aggregate percentages of Trichoptera and Chaoboridae in lesser scaup diets (1% and 0%, respectively) were lower than those reported from the same location in the 1970s (14% and 2%, respectively), whereas the percentage of Chironomidae (40%) was higher than that of historical levels (19%). Current mean individual prey mass of all insects, seeds, Chironomidae, and Zygoptera in Manitoba were 63.5%, 65.4%, 44.1%, and 44.9% lower than those of historical levels, respectively. The observed dietary shift from Amphipoda to less nutritious prey in Minnesota, coupled with lower mean individual prey mass in both locations, likely constitutes lower forage quality in lesser scaup diets, which is consistent with the spring condition hypothesis. ?? 2006 NRC.

  2. Characterization of acidic polysaccharides from the mollusks through acid hydrolysis.

    PubMed

    Cao, Jiuling; Wen, Chengrong; Lu, Jiaojiao; Teng, Nan; Song, Shuang; Zhu, Beiwei

    2015-10-01

    Uronic acid-containing polysaccharides (UACPs) including glycosaminoglycans (GAGs) exist widely in nature. Herein we propose an elegant methodology to identify UACPs by analyzing their disaccharides produced from the acid hydrolysis using HPLC-MS(n) upon 1-phenyl-3-methyl-5-pyrazolone (PMP) derivatization. Based on the optimization of experimental conditions by the single factor experiment and orthogonal test design, the combination of 1.3M TFA at 105°C for 3h is found to be the optimum. Subsequently, these conditions were applied to investigate the distribution of UACPs in 20 selected species of edible Bivalvia and Gastropoda. PMP-disaccharides derived from UACPs in mollusks were identified by comparing the retention time and mass spectra with those of the reference PMP-disaccharides from hyaluronic acid (HA), chondroitin sulfate (CS), heparin (HP), and AGSP with →4)-GlcA(1→2)-Man(1→ repeating units. The analysis reveals the prevalence of CS in the shellfishes as well as the HP, and existence of three non-GAG UACPs in 7 mollusks. PMID:26076626

  3. A seasonal comparison of zooplankton communities in the Kara Sea - With special emphasis on overwintering traits

    NASA Astrophysics Data System (ADS)

    Kosobokova, Ksenia Nikolaevna; Hirche, Hans-Juergen

    2016-06-01

    Siberian marginal seas cover large parts of the marine Arctic and host unique zooplankton communities. Detailed knowledge of their community structure and life history traits is a prerequisite to predict their response to ongoing and future climate and anthropogenic changes although winter data is extremely rare. Here data are presented from winter samples (February and April) in four biogeographic regions of the Kara Sea. Comparison of community composition and zooplankton abundance/biomass with data collected during summer showed lower diversity in winter, mainly due to the absence of freshwater species. In contrast to many other northern regions, seasonal biomass differences were relatively small. Year-round high biomass is maintained through a large share of small copepod species and constantly high share of the chaetognath Parasagitta elegans. An advanced state of gonad maturation and reproduction was observed in winter in herbivorous, omnivorous, and carnivorous species, e.g. the copepods Calanus glacialis, Drepanopus bungei, Limnocalanus macrurus, Oithona similis, Pseudocalanus major, Pseudocalanus minutus/acuspes, Paraeuchaeta glacialis, Microcalanus pygmaeus, and euphausiids, hydromedusae, and pteropods. Meroplanktonic larvae of nudibranchia, polychaeta and bivalvia were also registered. Close to the Yenisei mouth, abundance of eggs and larvae of various taxa exceeded older stages. Our data show that the brackish-water zone of the Kara Sea hosts specific communities with omnivorous species efficiently exploiting local resources during the winter and utilizing them for winter reproduction.

  4. Bacterial diversity of siliciclastic sediments in a Thalassia testudinum meadow and the implications for Lucinisca nassula chemosymbiosis

    NASA Astrophysics Data System (ADS)

    Green-García, Angela M.; Engel, Annette Summers

    2012-10-01

    Despite the ecological and economic importance of Thalassia testudinum (turtle grass) meadows along the Caribbean and Gulf of Mexico coasts, and recognition that microbial activities are critical to plant growth and health, the bacterial diversity of these habitats has been poorly studied. Based on comparative analyses of 16S rRNA gene sequences from sediments in a T. testudinum meadow, 25 major taxonomic groups (excluding candidate divisions) were retrieved, including Alpha- Delta-, and Gamma-proteobacteria, Chloroflexi, Bacteroidetes, Acidobacteria, Spirochaetes, and Firmicutes. The distribution of bacterial groups was linked to a strongly hypoxic and sulfidic redox gradient. The diversity is potentially novel because phylogenetic affinities of sediment sequences compared to contextually annotated environmental clones from different habitats or to cultured representatives indicated approximately 41% were more closely related to each other than to sequences retrieved from these other habitats. Of all the relationships, very few (2.4%) were to cultured organisms, but 27% were to environmental clones retrieved from shallow marine shelf and coastal sediments or from mangroves, estuarine, or wetland sediments. Rare sequences were closely related to endosymbiont groups of Lucinisca nassula (Lucinidea: Bivalvia) hosts collected from the same meadow, which may indicate that the sediment is a potential reservoir for free-living symbionts. This study provides insight into the ecological and evolutionary relationships of the Thalassia-lucinid-bacteria system in tropical to sub-tropical regions.

  5. Bioavailability of PAHs in aluminum smelter affected sediments: evaluation through assessment of pore water concentrations and in vivo bioaccumulation.

    PubMed

    Ruus, Anders; Bøyum, Olav; Grung, Merete; Næs, Kristoffer

    2010-12-15

    Bioaccumulation of polycyclic aromatic hydrocarbons (PAHs) from coal tar pitch polluted sediments was predicted by (1) a generic approach based on organic carbon-water partitioning and Gibbs linear free energy relationship (between K(OW) and K(OC)), and (2) measurements of freely dissolved concentrations of PAHs in the sediment pore water, using passive samplers and solid phase extraction. Results from these predictions were compared with those from in vivo bioaccumulation experiments using Nereis diversicolor (Polychaeta), Hinia reticulata (Gastropoda), and Nuculoma tenuis (Bivalvia). Measured sediment/water partition coefficients were higher than predicted by the generic approach. Furthermore, predicted biota-to-sediment accumulation factors (BSAFs) derived from measured pore water concentrations were more in agreement with the bioaccumulation observed for two of the three species. Discrepancies associated with the third species (N. tenuis) were likely a result of particles remaining in the intestine (as shown by microscopic evaluation). These results indicate the importance of conducting site-specific evaluations of pore water concentrations and/or bioaccumulation studies by direct measurements to accurately provide a basis for risk assessment and remediation plans. The importance of knowledge regarding specific characteristics of model organisms is emphasized. PMID:21077669

  6. Composition and abundance of epibenthic-sledge catches in the South Polar Front of the Atlantic

    NASA Astrophysics Data System (ADS)

    Brandt, A.; Havermans, C.; Janussen, D.; Jörger, K. M.; Meyer-Löbbecke, A.; Schnurr, S.; Schüller, M.; Schwabe, E.; Brandão, S. N.; Würzberg, L.

    2014-10-01

    An epibenthic sledge (EBS) was deployed at seven different deep-sea stations along the South Polar Front of the Atlantic in order to explore the composition and abundance of macrofaunal organisms and to identify the most abundant taxa in this transition zone to the Southern Ocean. In total 3,130 specimens were sampled by means of the EBS on board of RV Polarstern during the expedition ANT-XXVIII/3 in the austral summer of 2012. Benthic and suprabenthic Crustacea occurred to be most frequent in the samples. Among those, copepods were by far most numerous, with 1,585 specimens followed by the peracarid taxa Isopoda (236 ind.), Amphipoda (103 ind.), Tanaidacea (78 ind.) and Cumacea (50 ind.). Annelida were represented by a high number of specimens belonging to different polychaete taxa (404 ind.). The molluscan fauna was clearly dominated by Bivalvia (255 ind.), followed in numbers of specimens by Gastropoda (47 ind.). The deep-sea benthos sampled along the Southern Polar Front occurred in surprisingly low abundances, contrasting the largely high surface productivity of the area. Numbers of specimens across different macrofaunal taxa and especially of peracarid crustaceans underscored by far those from South Ocean sites at higher latitudes in the Weddell Sea.

  7. Complete sequences of the highly rearranged molluscan mitochondrial genomes of the scaphopod graptacme eborea and the bivalve mytilus edulis

    SciTech Connect

    Boore, Jeffrey L.; Medina, Monica; Rosenberg, Lewis A.

    2004-01-31

    We have determined the complete sequence of the mitochondrial genome of the scaphopod mollusk Graptacme eborea (Conrad, 1846) (14,492 nts) and completed the sequence of the mitochondrial genome of the bivalve mollusk Mytilus edulis Linnaeus, 1758 (16,740 nts). (The name Graptacme eborea is a revision of the species formerly known as Dentalium eboreum.) G. eborea mtDNA contains the 37 genes that are typically found and has the genes divided about evenly between the two strands, but M. edulis contains an extra trnM and is missing atp8, and has all genes on the same strand. Each has a highly rearranged gene order relative to each other and to all other studied mtDNAs. G. eborea mtDNA has almost no strand skew, but the coding strand of M. edulis mtDNA is very rich in G and T. This is reflected in differential codon usage patterns and even in amino acid compositions. G. eborea mtDNA has fewer non-coding nucleotides than any other mtDNA studied to date, with the largest non-coding region being only 24 nt long. Phylogenetic analysis using 2,420 aligned amino acid positions of concatenated proteins weakly supports an association of the scaphopod with gastropods to the exclusion of Bivalvia, Cephalopoda, and Polyplacophora, but is generally unable to convincingly resolve the relationships among major groups of the Lophotrochozoa, in contrast to the good resolution seen for several other major metazoan groups.

  8. A phenological shift in the time of recruitment of the shipworm, Teredo navalis L., mirrors marine climate change.

    PubMed

    Appelqvist, Christin; Havenhand, Jonathan N

    2016-06-01

    For many species, seasonal changes in key environmental variables such as food availability, light, and temperature drive the timing ("phenology") of major life-history events. Extensive evidence from terrestrial, freshwater, and marine habitats shows that global warming is changing the timings of many biological events; however, few of these studies have investigated the effects of climate change on the phenology of larval recruitment in marine invertebrates. Here, we studied temperature-related phenological shifts in the breeding season of the shipworm Teredo navalis (Mollusca, Bivalvia). We compared data for the recruitment period of T. navalis along the Swedish west coast during 2004-2006 with similar data from 1971-1973, and related differences in recruitment timing to changes in sea surface temperature over the same period. We found no significant shift in the timing of onset of recruitment over this ~30-year time span, but the end of recruitment was an average of 26 days later in recent years, leading to significantly longer recruitment periods. These changes correlated strongly with increased sea surface temperatures and coincided with published thermal tolerances for reproduction in T. navalis. Our findings are broadly comparable with other reports of phenological shifts in marine species, and suggest that warmer sea surface temperatures are increasing the likelihood of successful subannual reproduction and intensifying recruitment of T. navalis in this region. PMID:27516852

  9. Assessing the fidelity of the fossil record by using marine bivalves

    PubMed Central

    Valentine, James W.; Jablonski, David; Kidwell, Susan; Roy, Kaustuv

    2006-01-01

    Taxa that fail to become incorporated into the fossil record can reveal much about the biases of this record and provide the information needed to correct such biases in empirical analyses of the history of life. Yet little is known about the characteristics of taxa missing from the fossil record. For the marine Bivalvia, which have become a model system for macroevolutionary and macroecological analysis in the fossil record, 308 of the 1,292 living genera and subgenera (herein termed “taxa”) are not recorded as fossils. These missing taxa are not a random sample of the clade, but instead tend to have small body size, reactive shell structures, commensal or parasitic habit, deep-sea distribution, narrow geographic range, restriction to regions exposing few Neogene marine sediments, or recent date of formal taxonomic description in the neontological literature. Most missing taxa show two or more of these features and tend to be concentrated in particular families. When we exclude the smallest taxa (<1 cm) and deep-sea endemics, date of published description and geographic range become the strongest predictors of the missing taxa; other factors are statistically insignificant or have relatively small effects. These biases might influence a variety of analyses including the use of fossil data in support of phylogenetic analyses, molecular clock calibrations, and analyses of spatial and temporal dynamics of clades and biotas. Clade inventories such as these can be used to develop protocols that minimize the biases imposed by sampling and preservation. PMID:16617108

  10. Complete genome sequence of Candidatus Ruthia magnifica.

    PubMed

    Roeselers, Guus; Newton, Irene L G; Woyke, Tanja; Auchtung, Thomas A; Dilly, Geoffrey F; Dutton, Rachel J; Fisher, Meredith C; Fontanez, Kristina M; Lau, Evan; Stewart, Frank J; Richardson, Paul M; Barry, Kerrie W; Saunders, Elizabeth; Detter, John C; Wu, Dongying; Eisen, Jonathan A; Cavanaugh, Colleen M

    2010-01-01

    The hydrothermal vent clam Calyptogena magnifica (Bivalvia: Mollusca) is a member of the Vesicomyidae. Species within this family form symbioses with chemosynthetic Gammaproteobacteria. They exist in environments such as hydrothermal vents and cold seeps and have a rudimentary gut and feeding groove, indicating a large dependence on their endosymbionts for nutrition. The C. magnifica symbiont, Candidatus Ruthia magnifica, was the first intracellular sulfur-oxidizing endosymbiont to have its genome sequenced (Newton et al. 2007). Here we expand upon the original report and provide additional details complying with the emerging MIGS/MIMS standards. The complete genome exposed the genetic blueprint of the metabolic capabilities of the symbiont. Genes which were predicted to encode the proteins required for all the metabolic pathways typical of free-living chemoautotrophs were detected in the symbiont genome. These include major pathways including carbon fixation, sulfur oxidation, nitrogen assimilation, as well as amino acid and cofactor/vitamin biosynthesis. This genome sequence is invaluable in the study of these enigmatic associations and provides insights into the origin and evolution of autotrophic endosymbiosis. PMID:21304746

  11. Ross Sea Mollusca from the Latitudinal Gradient Program: R/V Italica 2004 Rauschert dredge samples

    PubMed Central

    Ghiglione, Claudio; Alvaro, Maria Chiara; Griffiths, Huw J.; Linse, Katrin; Schiaparelli, Stefano

    2013-01-01

    Abstract Information regarding the molluscs in this dataset is based on the Rauschert dredge samples collected during the Latitudinal Gradient Program (LGP) on board the R/V “Italica” in the Ross Sea (Antarctica) in the austral summer 2004. A total of 18 epibenthic dredge deployments/samplings have been performed at four different locations at depths ranging from 84 to 515m by using a Rauschert dredge with a mesh size of 500μm. In total 8,359 specimens have been collected belonging to a total of 161 species. Considering this dataset in terms of occurrences, it corresponds to 505 discrete distributional records (incidence data). Of these, in order of abundance, 5,965 specimens were Gastropoda (accounting for 113 species), 1,323 were Bivalvia (accounting for 36 species), 949 were Aplacophora (accounting for 7 species), 74 specimens were Scaphopoda (3 species), 38 were Monoplacophora (1 species) and, finally, 10 specimens were Polyplacophora (1 species). This data set represents the first large-scale survey of benthic micro-molluscs for the area and provides important information about the distribution of several species, which have been seldom or never recorded before in the Ross Sea. All vouchers are permanently stored at the Italian National Antarctic Museum (MNA), Section of Genoa, enabling future comparison and crosschecking. This material is also currently under study, from a molecular point of view, by the barcoding project “BAMBi” (PNRA 2010/A1.10). PMID:24146597

  12. Comparative analysis of riverscape genetic structure in rare, threatened and common freshwater mussels

    USGS Publications Warehouse

    Galbraith, Heather S.; Zanatta, David T; Wilson, Chris C.

    2015-01-01

    Freshwater mussels (Bivalvia: Unionoida) are highly imperiled with many species on the verge of local extirpation or global extinction. This study investigates patterns of genetic structure and diversity in six species of freshwater mussels in the central Great Lakes region of Ontario, Canada. These species vary in their conservation status (endangered to not considered at risk), life history strategy, and dispersal capabilities. Evidence of historical genetic connectivity within rivers was ubiquitous across species and may reflect dispersal abilities of host fish. There was little to no signature of recent disturbance events or bottlenecks, even in endangered species, likely as a function of mussel longevity and historical population sizes (i.e., insufficient time for genetic drift to be detectable). Genetic structure was largely at the watershed scale suggesting that population augmentation via translocation within rivers may be a useful conservation tool if needed, while minimizing genetic risks to recipient sites. Recent interest in population augmentation via translocation and propagation may rely on these results to inform management of unionids in the Great Lakes region.

  13. Mobile Element Evolution Playing Jigsaw—SINEs in Gastropod and Bivalve Mollusks

    PubMed Central

    Matetovici, Irina; Sajgo, Szilard; Ianc, Bianca; Ochis, Cornelia; Bulzu, Paul; Popescu, Octavian; Damert, Annette

    2016-01-01

    SINEs (Short INterspersed Elements) are widely distributed among eukaryotes. Some SINE families are organized in superfamilies characterized by a shared central domain. These central domains are conserved across species, classes, and even phyla. Here we report the identification of two novel such superfamilies in the genomes of gastropod and bivalve mollusks. The central conserved domain of the first superfamily is present in SINEs in Caenogastropoda and Vetigastropoda as well as in all four subclasses of Bivalvia. We designated the domain MESC (Romanian for MElc—snail and SCoica—mussel) because it appears to be restricted to snails and mussels. The second superfamily is restricted to Caenogastropoda. Its central conserved domain—Snail—is related to the Nin-DC domain. Furthermore, we provide evidence that a 40-bp subdomain of the SINE V-domain is conserved in SINEs in mollusks and arthropods. It is predicted to form a stable stem-loop structure that is preserved in the context of the overall SINE RNA secondary structure in invertebrates. Our analysis also recovered short retrotransposons with a Long INterspersed Element (LINE)-derived 5′ end. These share the body and/or the tail with transfer RNA (tRNA)-derived SINEs within and across species. Finally, we identified CORE SINEs in gastropods and bivalves—extending the distribution range of this superfamily. PMID:26739168

  14. Meiobenthos assemblages in the mekong estuarine system with special focus on free-living marine nematodes

    NASA Astrophysics Data System (ADS)

    Quang, Ngo Xuan; Vanreusel, Ann; Smol, Nic; Chau, Nguyen Ngoc

    2010-12-01

    Meiobenthos assemblages in eight estuaries of the Mekong river system were investigated in August 2008 (from the Cua Tieu estuary to the Tran De estuary). In each estuary, one sampling station was established for meiobenthos sampling. Twelve major taxa of meiobenthos were recorded in this estuarine system, including Nematoda, Copepoda, Turbellaria, Polychaeta, Oligochaeta, Tardigrada, Bivalvia, Ostracoda, Amphipoda, Cumacea, Gastrotricha, Gastropoda, and Crustacean Nauplii larvae. The densities of the meiobenthos range from 581 to 3168 inds/10 cm2. Nematodes always occupy the highest numbers with a percentage ranging from 64-99%. There are 135 nematode genera recorded in this study with the following as dominant genera Desmodora, Leptolaimus, Halalaimus, Thalassomonhystera, Theristus, Daptonema, Rhynchonema, Parodontophora, and Oncholaimus. Although the biodiversity of the meiobenthos at higher taxa level is not high compared to other marine environments, the estimates of nematode biodiversity at the genus level indicates high values. The increase in number of genera with increasing sampling intensity illustrate that the diversity is underestimated and would have been higher if the authors had considered a larger number of individuals, more replicates per station, and more sampling stations.

  15. Mobile Element Evolution Playing Jigsaw - SINEs in Gastropod and Bivalve Mollusks.

    PubMed

    Matetovici, Irina; Sajgo, Szilard; Ianc, Bianca; Ochis, Cornelia; Bulzu, Paul; Popescu, Octavian; Damert, Annette

    2016-01-01

    SINEs (Short INterspersed Elements) are widely distributed among eukaryotes. Some SINE families are organized in superfamilies characterized by a shared central domain. These central domains are conserved across species, classes, and even phyla. Here we report the identification of two novel such superfamilies in the genomes of gastropod and bivalve mollusks. The central conserved domain of the first superfamily is present in SINEs in Caenogastropoda and Vetigastropoda as well as in all four subclasses of Bivalvia. We designated the domain MESC (Romanian for MElc-snail and SCoica-mussel) because it appears to be restricted to snails and mussels. The second superfamily is restricted to Caenogastropoda. Its central conserved domain-Snail-is related to the Nin-DC domain. Furthermore, we provide evidence that a 40-bp subdomain of the SINE V-domain is conserved in SINEs in mollusks and arthropods. It is predicted to form a stable stem-loop structure that is preserved in the context of the overall SINE RNA secondary structure in invertebrates. Our analysis also recovered short retrotransposons with a Long INterspersed Element (LINE)-derived 5' end. These share the body and/or the tail with transfer RNA (tRNA)-derived SINEs within and across species. Finally, we identified CORE SINEs in gastropods and bivalves-extending the distribution range of this superfamily. PMID:26739168

  16. Amundsen Sea Mollusca from the BIOPEARL II expedition.

    PubMed

    Moreau, Camille; Linse, Katrin; Griffiths, Huw; Barnes, David; Kaiser, Stefanie; Glover, Adrian; Sands, Chester; Strugnell, Jan; Enderlein, Peter; Geissler, Paul

    2013-01-01

    Information regarding the molluscs in this dataset is based on the epibenthic sledge (EBS) samples collected during the cruise BIOPEARL II / JR179 RRS James Clark Ross in the austral summer 2008. A total of 35 epibenthic sledge deployments have been performed at five locations in the Amundsen Sea at Pine Island Bay (PIB) and the Amundsen Sea Embayment (ASE) at depths ranging from 476 to 3501m. This presents a unique and important collection for the Antarctic benthic biodiversity assessment as the Amundsen Sea remains one of the least known regions in Antarctica. Indeed the work presented in this dataset is based on the first benthic samples collected with an EBS in the Amundsen Sea. However we assume that the data represented are an underestimation of the real fauna present in the Amundsen Sea. In total 9261 specimens belonging to 6 classes 55 families and 97 morphospecies were collected. The species richness per station varied between 6 and 43. Gastropoda were most species rich 50 species followed by Bivalvia (37), Aplacophora (5), Scaphopoda (3) and one from each of Polyplacophora and Monoplacophora. PMID:23794869

  17. Meiofauna associated with a Pacific coral reef in Costa Rica

    NASA Astrophysics Data System (ADS)

    Guzmán, Héctor M.; Obando, Vilma L.; Cortés, Jorge

    1987-10-01

    The meiofauna of two coral reef habitats at Isla del Naño, Costa Rica was studied over a one year period. The dominant groups were: Foraminifera (21.2%), Copepoda (19.7%), Nematoda (19.1%), Gastropoda (16.5%), Polychaeta (7.2%) and Bivalvia (6.6%). The highest diversity was found in coarse, heterogeneous sands with the highest percentage of carbonates. The meiofauna showed a high degree of horizontal aggregation, which is a characteristic pattern for macro- and meiofauna in sediments of variable composition. No vertical variation in distribution was evident, probably due to the deep location of the Redox Potential Discontinuity layer. The total densities of organisms found in this study (99 to 575 ind/10 cm2) are low compared with densities in similar non-reefal sands (7 to 6116), and from fine sediments (80 to 17 000), but are comparable to densities found in other reef areas (39 to 609.5 ind/10 cm2). This is the first report on meiofauna from the eastern Pacific, and the first time that foraminiferans are the dominant group.

  18. A neurophylogenetic approach provides new insight to the evolution of Scaphopoda.

    PubMed

    Sumner-Rooney, Lauren H; Schrödl, Michael; Lodde-Bensch, Eva; Lindberg, David R; Heß, Martin; Brennan, Gerard P; Sigwart, Julia D

    2015-01-01

    The position of scaphopods in molluscan phylogeny remains singularly contentious, with several sister relationships supported by morphological and phylogenomic data: Scaphopoda + Bivalvia (Diasoma), Scaphopoda + Cephalopoda (Variopoda), and Scaphopoda + Gastropoda. Nervous system architecture has contributed significant insights to reconstructing phylogeny in the Mollusca and other invertebrate groups, but a modern neurophylogenetic approach has not been applied to molluscs, hampered by a lack of clearly defined homologous characters that can be unequivocally compared across the radical body plan disparity among the living clades. We present the first three-dimensional reconstruction of the anterior nervous system of a scaphopod, Rhabdus rectius, using histological tomography. We also describe a new putative sensory organ, a paired and pigmented sensory mantle slit. This structure is restricted to our study species and not a general feature of scaphopods, but it forms an integral part of the description of the nervous system in R. rectius. It also highlights the potential utility of neuro-anatomical characters for multiple levels of phylogenetic inference beyond this study. This potential has not previously been exploited for the thorny problem of molluscan phylogeny. The neuroanatomy of scaphopods demonstrates a highly derived architecture that shares a number of key characters with the cephalopod nervous system, and supports a Scaphopoda + Cephalopoda grouping. PMID:26487042

  19. Are Predators Limiting Zebra Mussel Colonization of Unionid Mussels in Great Lake Coastal Wetlands?

    NASA Astrophysics Data System (ADS)

    de Szalay, F. A.; Bowers, R.

    2005-05-01

    Although many native mollusc populations have been eliminated in the Laurentian Great Lakes by the exotic zebra mussel, recent surveys have found abundant unionid (Bivalvia: Unionidae) populations in some coastal wetlands. Unionid burrowing in soft sediments and predation by fish have been shown to reduce numbers of attached zebra mussels, and we tested these factors in a Lake Erie coastal wetland. In 2002, we held live unionids (Leptodea fragilis, Quadrula quadrula) and Pyganodon grandis shells in exclosures with wire mesh bottoms that were buried to sediment depths of either 5, 10, or 20 cm. After 2 months, numbers of attached dreissenids on unionids were significantly higher inside all exclosure treatments than outside exclosures. This indicated that either unionid burrowing was prevented in all sediment depth treatments or molluscivores were excluded by exclosures. In 2004, we measured dreissenid colonization on Q. quadrula and PVC plates in bottomless exclosures with different mesh sizes. After 6 months, dreissenid numbers on PVC plates and on Q. quadrula in 2.5 cm X 2.5 cm and 5 cm X 10 cm mesh exclosures were significantly higher than in open exclosures. These data suggest that molluscivores are important in limiting dreissenids in Great Lake coastal wetlands.

  20. Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase beta-subunit gene.

    PubMed

    Anderson, Frank E; Córdoba, Alonso J; Thollesson, Mikael

    2004-03-01

    Molecular investigations of deep-level relationships within and among the animal phyla have been hampered by a lack of slowly evolving genes that are amenable to study by molecular systematists. To provide new data for use in deep-level metazoan phylogenetic studies, primers were developed to amplify a 1.3-kb region of the alpha subunit of the nuclear-encoded sodium-potassium ATPase gene from 31 bilaterians representing several phyla. Maximum parsimony, maximum likelihood, and Bayesian analyses of these sequences (combined with ATPase sequences for 23 taxa downloaded from GenBank) yield congruent trees that corroborate recent findings based on analyses of other data sets (e.g., the 18S ribosomal RNA gene). The ATPase-based trees support monophyly for several clades (including Lophotrochozoa, a form of Ecdysozoa, Vertebrata, Mollusca, Bivalvia, Gastropoda, Arachnida, Hexapoda, Coleoptera, and Diptera) but do not support monophyly for Deuterostomia, Arthropoda, or Nemertea. Parametric bootstrapping tests reject monophyly for Arthropoda and Nemertea but are unable to reject deuterostome monophyly. Overall, the sodium-potassium ATPase alpha-subunit gene appears to be useful for deep-level studies of metazoan phylogeny. PMID:15045481

  1. Amundsen Sea Mollusca from the BIOPEARL II expedition

    PubMed Central

    Moreau, Camille; Linse, Katrin; Griffiths, Huw; Barnes, David; Kaiser, Stefanie; Glover, Adrian; Sands, Chester; Strugnell, Jan; Enderlein, Peter; Geissler, Paul

    2013-01-01

    Abstract Information regarding the molluscs in this dataset is based on the epibenthic sledge (EBS) samples collected during the cruise BIOPEARL II / JR179 RRS James Clark Ross in the austral summer 2008. A total of 35 epibenthic sledge deployments have been performed at five locations in the Amundsen Sea at Pine Island Bay (PIB) and the Amundsen Sea Embayment (ASE) at depths ranging from 476 to 3501m. This presents a unique and important collection for the Antarctic benthic biodiversity assessment as the Amundsen Sea remains one of the least known regions in Antarctica. Indeed the work presented in this dataset is based on the first benthic samples collected with an EBS in the Amundsen Sea. However we assume that the data represented are an underestimation of the real fauna present in the Amundsen Sea. In total 9261 specimens belonging to 6 classes 55 families and 97 morphospecies were collected. The species richness per station varied between 6 and 43. Gastropoda were most species rich 50 species followed by Bivalvia (37), Aplacophora (5), Scaphopoda (3) and one from each of Polyplacophora and Monoplacophora. PMID:23794869

  2. In vivo effect of cadmium, copper and lead on glutathione concentration in Mercenaria brown cells

    SciTech Connect

    Zaroogian, G.

    1994-12-31

    The intent of this study was to test the hypothesis that Cd{sup 2+}, C{sup 2+} and Pb{sup 2+} cause depletion of glutathione (GSH) in brown cells of Mercenaria mercenaria (Bivalvia). Brown cell involvement in detoxification is due in part to endogenous GSH which conjugates with many divalent metals and xenobiotics. When compared to controls, Mercenaria injected with 20 mM Cd{sup 2+}, 1.0 mM Cu{sup 2+}, or 5.0 mM Pb{sup 2+} had significantly less GSH in brown cells. Lower GSH concentrations due to each metal treatment was not dose dependent. However, N-methylmaleimide (NEM), which binds irreversibly to sulfhydryl groups and used as a positive control in this study, lowered brown cell GSH concentrations in a dose dependent manner after injection into Mercenaria. When the fluorescent probe monochlorobimane (mBC1) which is specific for GSH was used in conjunction with laser cytometry, it became apparent that the fluorescent conjugate was diffusely distributed in the cytoplasm and is heterogeneously distributed among brown cell populations. In addition, mBC1 treatment of brown cells from Mercenaria injected with Cd{sup 2+}, CU{sup 2+} or Pb{sup 2+}, indicated that brown cell resistance to metal cytotoxicity may be due to interference with metal transport across brown cell membranes. These results indicate that partial not complete depletion of GSH with metals is possible in brown cells.

  3. [Paralytic shellfish poisoning by Spondylus calcifer contaminated with Pyrodinium bahamense, Costa Rica, 1989-1990].

    PubMed

    Mata, L; Abarca, G; Marranghello, L; Víquez, R

    1990-06-01

    This paper describes an outbreak of paralytic shellfish poisoning (PSP), affecting human populations on the Pacific Coast of Costa Rica in October 1989. Numbness in arms, face and legs occurred 30 to 45 minutes after ingestion of the large clam Spondylus calcifer. Paralysis of legs and respiratory symptoms followed, often persisting for one week. Large amounts of the dinoflagellate Pyrodinium bahamense were found in the intestine of the mollusk. A toxin was detected in crude or filtered and heated macerates of intestine, muscle, mantle and hepatopancreas of S. calcifer, and to a lesser extent Tagelus sp., by injection of its crude or diluted extracts in white mice. The effects in mice consisted in paralysis and asphyxia generally leading to death in less than 5 minutes, compatible with saxitoxin. Mice were killed by the toxin in macerates diluted 1:100 to 1:1000. No toxin was detected in Anadara tuberculosa (Bivalvia) or in peneids. Prevention rests on intersectoral actions between state and private sectors in charge of fishing, distribution and marketing of shellfish, as well as on education of the population at large. PMID:2093952

  4. Modeling bivalve diversification: the effect of interaction on a macroevolutionary system

    NASA Technical Reports Server (NTRS)

    Miller, A. I.; Sepkoski, J. J. Jr; Sepkoski JJ, J. r. (Principal Investigator)

    1988-01-01

    The global diversification of the class Bivalvia has historically received two conflicting interpretations. One is that a major upturn in diversification was associated with, and a consequence of, the Lake Permian mass extinction. The other is that mass extinctions have had little influence and that bivalves have experienced slow but nearly steady exponential diversification through most of their history, unaffected by interactions with other clades. We find that the most likely explanation lies between these two interpretations. Through most of the Phanerozoic, the diversity of bivalves did indeed exhibit slow growth, which was not substantially altered by mass extinctions. However, the presence of "hyperexponential bursts" in diversification during the initial Ordovician radiation and following the Late Permian and Late Cretaceous mass extinctions suggests a more complex history in which a higher characteristic diversification rate was dampened through most of the Phanerozoic. The observed pattern can be accounted for with a two-phase coupled (i.e., interactive) logistic model, where one phase is treated as the "bivalves" and the other phase is treated as a hypothetical group of clades with which the "bivalves" might have interacted. Results of this analysis suggest that interactions with other taxa have substantially affected bivalve global diversity through the Phanerozoic.

  5. Development and application of the mollusc Arctica islandica as a paleoceanographic tool for the North Atlantic Ocean

    SciTech Connect

    Weidman, C.R.

    1995-09-01

    Until now there has been no tool comparable to corals for reconstructing long term high-resolution geochemical time-series for the colder, higher-latitude oceans. In this thesis, the long-lived (+100 years) boreal mollusc (Bivalvia) Arctica islandica is shown to be practical for this purpose in the northern North Atlantic Ocean. The evidence, compiled here, demonstrates that the carbonate shell of this species faithfully records the ambient dissolved inorganic carbon`s (DIC) radiocarbon ({Delta}{sup 14}C) concentration and accurately reflects the ambient temperature in its stable oxygen isotope ({delta}{sup 18}O) composition. However, the stable carbon isotope ({delta}{sup 13}C) composition of the A. islandica shell likely is not a good recorder of ambient DIC {delta}{sup 13}C, and likely responds to physiological controls. Four {Delta}{sup 14}C time histories are reconstructed from the annual bands of A. islandica shells for the higher-latitudes of the northern North Atlantic Ocean (from 41{degree}N to 70{degree}N).

  6. A Quantitative Food Web Model for the Macroinvertebrate Community of a Northern German Lowland Stream

    NASA Astrophysics Data System (ADS)

    Poepperl, Rainer

    2003-09-01

    Trophic interactions and cycling of organic carbon within the macroinvertebrate community of a Northern German lowland stream were analyzed based on a compartment model. The network model describes the structure of the food web quantifying biomass, production, and consumption of their elements, of the entire system and between trophic levels. System primary production is 153.7 g C m-2 yr-1 and invertebrate production 53.3 g C m-2 yr-1. Invertebrate consumption amounts to 702.6 g C m-2 yr-1. Main flows are identified between trophic level 1 and 2 and are connected with highly productive compartments. Anodonta and Pseudanodonta and Dreissena polymorpha show the highest consumption of all groups with 269.9 g C m-2 yr-1 and 114.1 g C m-2 yr-1, respectively. System consumption is highest on the import from the upstream lake with 532.5 g C m-2 yr-1, sediment detritus with 135.5 g C m-2 yr-1, and primary producers with 25.7 g C m-2 yr-1. The lowest predation pressure is observed for Bivalvia with an ecotrophic efficiency of <10% and highest for Chironomidae with 91%. Approximately 20% of organic matter entering the detritus pool are recycled to the living groups of the system. Transfer efficiencies between discrete trophic levels are generally low except for transfer of detrital material between level I and II.

  7. Age and paleoenvironmental significance of mega-invertebrates from the "San Pedro" Formation in the Coyote Hills, Fullerton and Buena Park, Orange County, Southern California

    USGS Publications Warehouse

    Powell, Charles L.; Stevens, Dave

    2000-01-01

    The "San Pedro" Formation in the Coyote Hills contains an invertebrate fossil as-semblage of 184 taxa from 158 localities. The fauna consists of two annelids, 174 mollusks (80 bivalves, 94 gastropods, and three scaphopods), five arthropods, and three echinoids, along with other minor constituents recognized by not specifically identified during the present study. These fossils are divided into three assemblages; 1) a lower, Pliocene assemblage (which may not differ ecologically from the middle fauna), 2) a middle, cool water assemblage, and 3) an upper, temperate to warm water. These fossils suggest a probably late Pliocene to early Pleistocene age for outcrops of the "San Pedro" Formation in the Coyote Hills. A fourth assemblage with a limited, restricted marine fauna occurs in the overlying Coyote Hills Formation. The occurrence of Solamen columbianum (Dall) (Mollusca: Bivalvia) in the "San Pedro" Formation of the Coyote Hills marks its first occurrence as a fossil. The oldest fossil occurrence of the gastropods Tegula pulligo (Gmelin), questionably Haliotis cracherodii Leach, and the crustacean Randallia ornata (Randell) occurs in the "San Pedroï" Formation in the Coyote Hills.

  8. The F-type complete mitochondrial genome of Arconaia lanceolata.

    PubMed

    Wang, Guiling; Guo, Liping; Li, Jiale

    2016-01-01

    In this study, complete nucleotide sequence of the F-type mitochondrial genome of Arconaia lanceolata (Bivalvia: Unioninae), the endemic species of freshwater pearl mussel in China, was first determined. The complete mitochondrial genome of Arconaia lanceolata is 15,782 bp in size, and encodes 35 genes, including 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs. Those genes are similar to most species of Unioninae in order, structure and composition. In the 13 protein-coding genes, ND2, Cytb, ND1 and ND6 are located in the light chain while the rest on the heavy chain. Also, COXI, Cytb, ND1, ND6 and ND4L with ATA as start codon, the remaining protein-coding genes initiated with the orthodox ATG as start codon. There are 28 non-coding regions in the mitochondrial genome of A. lanceolata, the largest is of 345 bp in length, located between ND5 and tRNA(Gln) gene. PMID:24660914

  9. Eco-environmental impact assessment of pre-leisure beach nourishment on the benthic invertebrate community at Anping coast

    NASA Astrophysics Data System (ADS)

    Shih, Chun-Han; Kuo, Yi-Yu; Chu, Ta-Jen; Chou, Wen-Chieh; Chang, Wei-Tse; Lee, Ying-Chou

    2011-06-01

    In recent years, owing to global warming and the rising sea levels, beach nourishment and groin building have been increasingly employed to protect coastal land from shoreline erosion. These actions may degrade beach habitats and reduce biomass and invertebrate density at sites where they were employed. We conducted an eco-environmental evaluation at the Anping artificial beach-nourishment project area. At this site, sand piles within a semi-enclosed spur groin have been enforced by use of eco-engineering concepts since 2003. Four sampling sites were monitored during the study period from July 2002 to September 2008. The environmental impact assessment and biological investigations that we conducted are presented here. The results from this study indicate that both biotic (number of species, number of individual organisms, and Shannon-Wiener diversity) and abiotic parameters (suspended solids, biological oxygen demand, chemical oxygen demand, dissolved inorganic nitrogen, dissolved inorganic phosphorus, total phosphorus, total organic carbon, median diameter, and water content) showed significant differences before and after beach engineering construction. Biological conditions became worse in the beginning stages of the engineering but improved after the restoration work completion. This study reveals that the composition of benthic invertebrates changed over the study period, and two groups of organisms, Bivalvia and Gastropoda, seemed to be particularly suitable to this habitat after the semi-enclosed artificial structures completion.

  10. Cell-Wall Changes and Cell Tension in Response to Cold Acclimation and Exogenous Abscisic Acid in Leaves and Cell Cultures.

    PubMed Central

    Rajashekar, C. B.; Lafta, A.

    1996-01-01

    Freeze-induced cell tensions were determined by cell water relations in leaves of broadleaf evergreen species and cell cultures of grapes (Vitis spp.) and apple (Malus domestica). Cell tensions increased in response to cold acclimation in leaves of broadleaf evergreen species during extracellular freezing, indicating a higher resistance to cell volume changes during freezing in cold-hardened leaves than in unhardened leaves. Unhardened leaves, typically, did not develop tension greater than 3.67 MPa, whereas cold-hardened leaves attained tensions up to 12 MPa. With further freezing there was a rapid decline and a loss of tension in unhardened leaves of all the broadleaf evergreen species studied. Also, similar results were observed in cold-hardened leaves of all of the species except in those of inkberry (Ilex glabra) and Euonymus fortunei, in which negative pressures persisted below -40[deg]C. Abscisic acid treatment of inkberry and Euonymus kiautschovica resulted in increases in freeze-induced tensions in leaves, suggesting that both cold acclimation and abscisic acid have similar effects on freezing behavior[mdash] specifically on the ability of cell walls to undergo deformation. Decreases in peak tensions were generally associated with lethal freezing injury and may suggest cavitation of cellular water. However, in suspension-cultured cells of grapes and apple, no cell tension was observed during freezing. Cold acclimation of these cells resulted in an increase in the cell-wall strength and a decrease in the limiting cell-wall pore size from 35 to 22 A in grape cells and from 29 to 22 A in apple cells. PMID:12226314

  11. Leaf anatomy and its implications for phylogenetic relationships in Taxaceae s. l.

    PubMed

    Ghimire, Balkrishna; Lee, Chunghee; Heo, Kweon

    2014-05-01

    The comparative study on leaf anatomy and stomata structures of six genera of Taxaceae s. l. was conducted. Leaf anatomical structures were very comparable to each other in tissue shape and their arrangements. Taxus, Austrotaxus, and Pseudotaxus have no foliar resin canal, whereas Amentotaxus, Cephalotaxus, and Torreya have a single resin canal located below the vascular bundle. Among them, Torreya was unique with thick-walled, almost round sclerenchymatous epidermal cells. In addition, Amentotaxus and Torreya were comprised of some fiber cells around the vascular bundle. Also, Amentotaxus resembled Cephalotaxus harringtonia and its var. nana because they have discontinuous fibrous hypodermis. However, C. fortunei lacked the same kind of cells. Stomata were arranged in two stomatal bands separated by a mid-vein. The most unique stomatal structure was of Taxus with papillose accessory cells forming stomatal apparatus and of Torreya with deeply seated stomata covered with a special filament structure. Some morphological and molecular studies have already been discussed for the alternative classification of taxad genera into different minor families. The present study is also similar to these hypotheses because each genus has their own individuality in anatomical structure and stomata morphology. In conclusion, these differences in leaf and stomata morphology neither strongly support the two tribes in Taxaceae nor fairly recognize the monogeneric family, Cephalotaxaceae. Rather, it might support an alternative classification of taxad genera in different minor families or a single family Taxaceae including Cephalotaxus. In this study, we would prefer the latter one because there is no clear reason to separate Cephalotaxus from the rest genera of Taxaceae. Therefore, Taxaceae should be redefined with broad circumscriptions including Cephalotaxus. PMID:24496502

  12. [Biomass allometric equations of nine common tree species in an evergreen broadleaved forest of subtropical China].

    PubMed

    Zuo, Shu-di; Ren, Yin; Weng, Xian; Ding, Hong-feng; Luo, Yun-jian

    2015-02-01

    Biomass allometric equation (BAE) considered as a simple and reliable method in the estimation of forest biomass and carbon was used widely. In China, numerous studies focused on the BAEs for coniferous forest and pure broadleaved forest, and generalized BAEs were frequently used to estimate the biomass and carbon of mixed broadleaved forest, although they could induce large uncertainty in the estimates. In this study, we developed the species-specific and generalized BAEs using biomass measurement for 9 common broadleaved trees (Castanopsis fargesii, C. lamontii, C. tibetana, Lithocarpus glaber, Sloanea sinensis, Daphniphyllum oldhami, Alniphyllum fortunei, Manglietia yuyuanensis, and Engelhardtia fenzlii) of subtropical evergreen broadleaved forest, and compared differences in species-specific and generalized BAEs. The results showed that D (diameter at breast height) was a better independent variable in estimating the biomass of branch, leaf, root, aboveground section and total tree than a combined variable (D2 H) of D and H (tree height) , but D2H was better than D in estimating stem biomass. R2 (coefficient of determination) values of BAEs for 6 species decreased when adding H as the second independent variable into D- only BAEs, where R2 value for S. sinensis decreased by 5.6%. Compared with generalized D- and D2H-based BAEs, standard errors of estimate (SEE) of BAEs for 8 tree species decreased, and similar decreasing trend was observed for different components, where SEEs of the branch decreased by 13.0% and 20.3%. Therefore, the biomass carbon storage and its dynamic estimates were influenced largely by tree species and model types. In order to improve the accuracy of the estimates of biomass and carbon, we should consider the differences in tree species and model types. PMID:26094447

  13. Genetic Diversity in Introduced Golden Mussel Populations Corresponds to Vector Activity

    PubMed Central

    Ghabooli, Sara; Zhan, Aibin; Sardiña, Paula; Paolucci, Esteban; Sylvester, Francisco; Perepelizin, Pablo V.; Briski, Elizabeta; Cristescu, Melania E.; MacIsaac, Hugh J.

    2013-01-01

    We explored possible links between vector activity and genetic diversity in introduced populations of Limnoperna fortunei by characterizing the genetic structure in native and introduced ranges in Asia and South America. We surveyed 24 populations: ten in Asia and 14 in South America using the mitochondrial cytochrome c oxidase subunit I (COI) gene, as well as eight polymorphic microsatellite markers. We performed population genetics and phylogenetic analyses to investigate population genetic structure across native and introduced regions. Introduced populations in Asia exhibit higher genetic diversity (HE = 0.667–0.746) than those in South America (HE = 0.519–0.575), suggesting higher introduction effort for the former populations. We observed pronounced geographical structuring in introduced regions, as indicated by both mitochondrial and nuclear markers based on multiple genetic analyses including pairwise ФST, FST, Bayesian clustering method, and three-dimensional factorial correspondence analyses. Pairwise FST values within both Asia (FST = 0.017–0.126, P = 0.000–0.009) and South America (FST = 0.004–0.107, P = 0.000–0.721) were lower than those between continents (FST = 0.180–0.319, P = 0.000). Fine-scale genetic structuring was also apparent among introduced populations in both Asia and South America, suggesting either multiple introductions of distinct propagules or strong post-introduction selection and demographic stochasticity. Higher genetic diversity in Asia as compared to South America is likely due to more frequent propagule transfers associated with higher shipping activities between source and donor regions within Asia. This study suggests that the intensity of human-mediated introduction vectors influences patterns of genetic diversity in non-indigenous species. PMID:23533614

  14. Effects of calcium on seed germination, seedling growth and photosynthesis of six forest tree species under simulated acid rain.

    PubMed

    Liu, Ting-Wu; Wu, Fei-Hua; Wang, Wen-Hua; Chen, Juan; Li, Zhen-Ji; Dong, Xue-Jun; Patton, Janet; Pei, Zhen-Ming; Zheng, Hai-Lei

    2011-04-01

    We selected six tree species, Pinus massoniana Lamb., Cryptomeria fortunei Hooibr. ex Otto et Dietr., Cunninghamia lanceolata (Lamb.) Hook., Liquidambar formosana Hance, Pinus armandii Franch. and Castanopsis chinensis Hance, which are widely distributed as dominant species in the forest of southern China where acid deposition is becoming more and more serious in recent years. We investigated the effects and potential interactions between simulated acid rain (SiAR) and three calcium (Ca) levels on seed germination, radicle length, seedling growth, chlorophyll content, photosynthesis and Ca content in leaves of these six species. We found that the six species showed different responses to SiAR and different Ca levels. Pinus armandii and C. chinensis were very tolerant to SiAR, whereas the others were more sensitive. The results of significant SiAR × Ca interactions on different physiological parameters of the six species demonstrate that additional Ca had a dramatic rescue effect on the seed germination and seedling growth for the sensitive species under SiAR. Altogether, we conclude that the negative effects of SiAR on seed germination, seedling growth and photosynthesis of the four sensitive species could be ameliorated by Ca addition. In contrast, the physiological processes of the two tolerant species were much less affected by both SiAR and Ca treatments. This conclusion implies that the degree of forest decline caused by long-term acid deposition may be attributed not only to the sensitivity of tree species to acid deposition, but also to the Ca level in the soil. PMID:21470980

  15. Co-expressed mitochondrial genomes: recently masculinized, recombinant mitochondrial genome is co-expressed with the female – transmitted mtDNA genome in a male Mytilus trossulus mussel from the Baltic Sea

    PubMed Central

    2014-01-01

    Background Few exceptions have been described from strict maternal inheritance of mitochondrial DNA in animals, including sea mussels (Mytilidae), clams (Donacidae, Veneridae and Solenidae) and freshwater mussels (Unionoidae) order. In these bivalves mitochondria and their DNA are transferred through two separate routes. The females inherit only the maternal mitochondrial DNA whereas the males inherit maternal as well as paternal mitochondrial DNA, which is usually present only in gonads and sperm. The mechanism controlling this phenomenon is unclear but leads to the existence of two separate mitochondrial DNA lineages in a single species. The lineages are usually well differentiated: up to 20-50% divergence in nucleotide sequence. Occasionally, a maternal mitochondrial DNA can invade the paternal transmission route, eventually replacing the diverged M-type and lowering the divergence. Such role reversal (masculinization) event has happened recently in the Mytilus population of the Baltic Sea which consists of M. edulis × M. trossulus hybrids, but the functional status of the resulting mitochondrial genome was unknown. Results In this paper we sequenced transcripts from one specimen that was identified as male carrying both the female mitochondrial genome and a recently masculinized mitochondrial genome. Additionally, the analysis of the control region has showed that the recently masculinized, recombinant genome, not only has an M-type control region and all coding regions derived from the F-type, but also is transcriptionally active along side the maternally inherited F-type genome. In the comparative analysis, the two genomes exhibit different substitution patterns, typical for the M vs. F genome comparisons. The genetic distances and ratios of non-synonymous substitutions also suggest that one of the genomes is transitioning from the maternal to the paternal inheritance mode, consistent with its recent masculinization. Conclusion We have shown, for the

  16. Influence of seep emission on the non-symbiont-bearing fauna and vagrant species at an active giant pockmark in the Gulf of Guinea (Congo-Angola margin)

    NASA Astrophysics Data System (ADS)

    Olu, K.; Caprais, J. C.; Galéron, J.; Causse, R.; von Cosel, R.; Budzinski, H.; Ménach, K. Le; Roux, C. Le; Levaché, D.; Khripounoff, A.; Sibuet, M.

    2009-12-01

    Detailed surveying with an ROV found that a dense and diverse cold-seep community colonises a giant pockmark located at 3200 m depth, 8 km north from the deep Congo channel. Several types of assemblages, either dominated by Mytilidae and Vesicomyidae bivalves or Siboglinidae polychaetes, are distributed on the 800-m diameter active area. The site is characterised by a most active central zone in a depression with abundant carbonate concretions and high methane fluxes where high-density clusters of mussels and siboglinids dominate. In contrast, the peripheral zones display large fields of dead and live vesicomyids on soft sediment, with a lower mean density and lower methane concentration in seawater. The associated megafauna includes Alvinocarididae shrimps, echinoids, holothurians of the family Synaptidae, several species of gastropods, two species of galatheids, and Zoarcidae and Ophidiidae fishes. Multivariate analyses of video transect data show that the distribution of these major megafauna species at the pockmark scale is influenced by the habitat heterogeneity due to fluid or gas emission, occurrence of hydrates, substratum variability and by the presence of large symbiont-bearing species. Several assemblages dominated either by mytilids, vesicomyids, or siboglinids have been sampled for megafauna densities and biomass estimations and stable isotope measurements ( δ13C and δ15N) of dominant species and food sources. The highest estimates of megafauna densities have been obtained in mytilid beds. According to their stable isotopes values, non-symbiont-bearing species mainly rely on chemosynthesis-originated carbon, either as primary consumers of chemoautotrophic microorganisms, or at higher trophic level recycling organic matter, or relying on bivalve and tubeworm production. Most of them likely feed on different sources like shrimps, but differences according to habitat have been evidenced. Carbon and nitrogen isotope ratios of galatheids and benthic or

  17. Highly diverse molluscan assemblages of Posidonia oceanica meadows in northwestern Alboran Sea (W Mediterranean): Seasonal dynamics and environmental drivers

    NASA Astrophysics Data System (ADS)

    Urra, Javier; Mateo Ramírez, Ángel; Marina, Pablo; Salas, Carmen; Gofas, Serge; Rueda, José L.

    2013-01-01

    The seasonal dynamics of the molluscan fauna associated with the westernmost populations of the Mediterranean seagrass Posidonia oceanica, has been studied throughout an annual cycle in the northwestern coasts of the Alboran Sea. Samples were collected seasonally (5 replicated per season) using a non-destructive sampling technique (airlift sampler) on quadrats of 50 × 50 cm at 2 sites located 7 km apart. Several environmental variables from the water column (temperature, chlorophyll a), the sediment (percentage of organic matter) and the seagrass meadows (shoot density, leaf height and width, number of leaves per shoot) were also measured in order to elucidate their relationships with the dynamics of the molluscan assemblages. In these meadows, a total of 17,416 individuals of molluscs were collected, belonging to 71 families and 171 species, being Rissoidae, Pyramidellidae and Trochidae the best-represented families, and Mytilidae, Nassaridae and Trochidae the dominant ones in terms of abundance. The assemblages were dominated by micro-algal grazers, filter feeders and ectoparasites (including those feeding on sessile preys). The species richness and the abundance displayed significant maximum values in summer, whereas evenness and diversity displayed maximum values in spring, being significant for the evenness. Both abundance and species richness values were positively correlated to seawater temperature and percentage organic matter, only for the latter, and negatively to leaf width. Significant seasonal groupings were obtained with multivariate analyses (MDS, Cluster, ANOSIM) using qualitative and quantitative data that could be mainly related to biological aspects (i.e. recruitment) of single species. The molluscan assemblages are influenced by the biogeographical location of the area (Alboran Sea), reflected in the absence or scarcity of most Mediterranean species strictly associated with P. oceanica (e.g. Tricolia speciosa, Rissoa ventricosa) and by the

  18. A multi-proxy approach to identifying short-lived marine incursions in the Early Carboniferous

    NASA Astrophysics Data System (ADS)

    Bennett, Carys; Davies, Sarah; Leng, Melanie; Snelling, Andrea; Millward, David; Kearsey, Timothy; Marshall, John; Reves, Emma

    2015-04-01

    This study is a contribution to the TW:eed Project (Tetrapod World: early evolution and diversification), which examines the rebuilding of Carboniferous ecosystems following a mass extinction at the end of the Devonian. The project focuses on the Tournaisian Ballagan Formation of Scotland and the Borders, which contains rare fish and tetrapod material. The Ballagan Formation is characterised by sandstones, dolomitic cementstones, paleosols, siltstones and gypsum deposits. The depositional environment ranges from fluvial, alluvial-plain to marginal-marine environments, with fluvial, floodplain and lacustrine deposition dominant. A multi-proxy approach combining sedimentology, palaeontology, micropalaeontology, palynology and geochemistry is used to identify short-lived marine transgressions onto the floodplain environment. Rare marginal marine fossils are: Chondrites-Phycosiphon, Spirorbis, Serpula, certain ostracod species, rare orthocones, brachiopods and putative marine sharks. More common non-marine fauna include Leiocopida and Podocopida ostracods, Mytilida and Myalinida bivalves, plants, eurypterids, gastropods and fish. Thin carbonate-bearing dolomitic cementstones and siltstone contain are the sedimentary deposits of marine incursions and occur throughout the formation. Over 600 bulk carbon isotope samples were taken from the 500 metre thick Norham Core (located near Berwick-Upon-Tweed), encompassing a time interval of around 13 million years. The results range from -26o to -19 δ13Corg, with an average of -19o much lighter than the average value for Early Carboniferous marine bulk organic matter (δ13C of -28 to -30). The isotope results correspond to broad-scale changes in the depositional setting, with more positive δ13C in pedogenic sediments and more negative δ13C in un-altered grey siltstones. They may also relate to cryptic (short-lived) marine incursions. A comparison of δ13C values from specific plant/wood fragments, palynology and bulk

  19. Deep-sea habitat heterogeneity influence on meiofaunal communities in the Gulf of Guinea

    NASA Astrophysics Data System (ADS)

    Van Gaever, Saskia; Galéron, Joëlle; Sibuet, Myriam; Vanreusel, Ann

    2009-12-01

    To estimate the degree of spatial heterogeneity of benthic deep-sea communities, we carried out a multiple-scale (from m's to 200 km) investigation in the Congo-Angola margins (Equatorial West African margin, 3150-4800 m) in which we examined the metazoan meiofauna at a variety of habitats along the Congo Channel system and in the associated cold seep. We investigate the structure, density, vertical distribution patterns in the sediment and biomass of meiofaunal communities in the Gulf of Guinea and how they are controlled by hydrologic and biogeochemical processes. The meiofaunal communities in the Gulf of Guinea were shaped by heterogeneous conditions on the margin, and reflect the multiple-scale spatial variability that corresponds with the different identified habitats. The two control sites, located at >100 km away from the canyon, were inhabited by very dense and the most diverse meiobenthic communities. Similar meiobenthic communities inhabited the transition zone between the canyon and the cold seep. Sites located along the Congo Channel were obviously affected by the local high-velocity bottom currents and unstable sedimentary conditions in this active submarine system. Extremely low meiobenthic densities and very low proportions in the most surficial sediment layers provided evidence for recently highly disturbed sediments at these sites. The remote operated vehicle (ROV) Victor 6000 provided images of the cold seep, showing a patchy distribution of several types of patchy distributed megafaunal communities dominated by three key symbiotic taxa (Mytilidae, Vesicomyidae and Siboglinidae). These cold seep sediments were colonised by a unique meiobenthic community, characterised by a high small-scale (m's) patchiness, low species richness and the prominent dominance of two large-sized nematode species: Sabatieria mortenseni, which is a cosmopolitan nematode known from littoral habitats, and an undescribed Desmodora species. The high individual body weight of

  20. The multi-xenobiotic resistance (MXR) efflux activity in hemocytes of Mytilus edulis is mediated by an ATP binding cassette transporter of class C (ABCC) principally inducible in eosinophilic granulocytes.

    PubMed

    Rioult, Damien; Pasquier, Jennifer; Boulangé-Lecomte, Céline; Poret, Agnès; Abbas, Imane; Marin, Matthieu; Minier, Christophe; Le Foll, Frank

    2014-08-01

    In marine and estuarine species, immunotoxic and/or immunomodulatory mechanisms are the crossroad of interactions between xenobiotics, microorganisms and physicochemical variations of the environment. In mussels, immunity relies exclusively on innate responses carried out by cells collectively called hemocytes and found in the open hemolymphatic circulatory system of these organisms. However, hemocytes do not form a homogenous population of immune cells since distinct subtypes of mussel blood cells can be distinguished by cytochemistry, flow cytometry or cell motility analysis. Previous studies have also shown that these cells are able to efflux xenobiotics by means of ATP binding cassette (ABC) transporter activities conferring a multixenobiotic resistance (MXR) phenotype. ABC transporters corresponding to vertebrate class B/P-glycoprotein (P-gp) and to class C/multidrug resistance related protein (MRP) are characterized in Mytilidae. Herein, we have investigated the relative contributions of ABCB- and ABCC-mediated efflux within the different hemocyte subpopulations of Mytilus edulis mussels, collected from areas differentially impacted by chemical contaminants in Normandy (France). RT-PCR analyses provide evidence for the presence of ABCB and ABCC transporters transcripts in hemocytes. Immunodetection of ABCB/P-gp with the monoclonal antibody UIC2 in living hemocytes revealed that expression was restricted to granular structures of spread cells. Efflux transporter activities, with calcein-AM as fluorescent probe, were measured by combining flow cytometry to accurate Coulter cell size measurements in order to get a cell-volume normalized fluorescence concentration. In these conditions, basal fluorescence levels were higher in hemocytes originating from Yport (control site) than in cells collected from the harbor of Le Havre, where mussels are more exposed to with persistent pollutants. By using specific ABCB/P-gp (verapamil, PSC833, zosuquidar) and ABCC/MRP (MK

  1. Phylogeny, phylogeography, and evolution in the Mediterranean region: News from a freshwater mussel (Potomida, Unionida).

    PubMed

    Froufe, Elsa; Prié, Vincent; Faria, João; Ghamizi, Mohamed; Gonçalves, Duarte V; Gürlek, Mustafa Emre; Karaouzas, Ioannis; Kebapçi, Ümit; Şereflişan, Hülya; Sobral, Carina; Sousa, Ronaldo; Teixeira, Amílcar; Varandas, Simone; Zogaris, Stamatis; Lopes-Lima, Manuel

    2016-07-01

    The Potomida genus (Bivalvia, Unionida) has a Circum-Mediterranean distribution and like other freshwater mussel species, its populations have suffered dramatic declines. Although this genus is currently considered as monotypic, it has a long history of taxonomic revisions and presently many aspects of its systematics and evolutionary history are unclear. We sampled a total of 323 individuals from 39 different sites across the Potomida genus distribution, and sequenced two mitochondrial (16S rDNA and Cytochrome c Oxidase Subunit I) and one nuclear (28S rDNA) genes to clarify its phylogeny and phylogeographic history. Our results show that the genus includes two well-supported clades, one comprising solely the western Mediterranean species Potomida littoralis, and the other including two eastern Mediterranean species, the Greek endemic P. acarnanica and the Anatolian and Middle Eastern P. semirugata. We suggest that Potomida started radiating during the upper Miocene, and that both vicariance and dispersal events shaped the diversification and distribution of the genus along the Mediterranean region. P. littoralis is further divided in two mitochondrial lineages, one restricted to Europe and the other occurring mostly in North Africa. Moreover, some European basins present both lineages in sympatry. The conservation status of the three recognized species should be reevaluated, particularly P. acarnanica, since it is restricted to two Greek river basins presenting a high risk of extinction. Overall, our results clarify some important gaps in knowledge concerning the phylogeny, phylogeography and evolution of the Potomida genus in the Mediterranean region with important taxonomical, ecological and conservational implications. PMID:27118180

  2. Gastropod arginine kinases from Cellana grata and Aplysia kurodai. Isolation and cDNA-derived amino acid sequences.

    PubMed

    Suzuki, T; Inoue, N; Higashi, T; Mizobuchi, R; Sugimura, N; Yokouchi, K; Furukohri, T

    2000-12-01

    Arginine kinase (AK) was isolated from the radular muscle of the gastropod molluscs Cellana grata (subclass Prosobranchia) and Aplysia kurodai (subclass Opisthobranchia), respectively, by ammonium sulfate fractionation, Sephadex G-75 gel filtration and DEAE-ion exchange chromatography. The denatured relative molecular mass values were estimated to be 40 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The isolated enzyme from Aplysia gave a Km value of 0.6 mM for arginine and a Vmax value of 13 micromole Pi min(-1) mg protein(-1) for the forward reaction. These values are comparable to other molluscan AKs. The cDNAs encoding Cellana and Aplysia AKs were amplified by polymerase chain reaction, and the nucleotide sequences of 1,608 and 1,239 bp, respectively, were determined. The open reading frame for Cellana AK is 1044 nucleotides in length and encodes a protein with 347 amino acid residues, and that for A. kurodai is 1077 nucleotides and 354 residues. The cDNA-derived amino acid sequences were validated by chemical sequencing of internal lysyl endopeptidase peptides. The amino acid sequences of Cellana and Aplysia AKs showed the highest percent identity (66-73%) with those of the abalone Nordotis and turbanshell Battilus belonging to the same class Gastropoda. These AK sequences still have a strong homology (63-71%) with that of the chiton Liolophura (class Polyplacophora), which is believed to be one of the most primitive molluscs. On the other hand, these AK sequences are less homologous (55-57%) with that of the clam Pseudocardium (class Bivalvia), suggesting that the biological position of the class Polyplacophora should be reconsidered. PMID:11281267

  3. Epifauna of the Sea of Japan collected via a new epibenthic sledge equipped with camera and environmental sensor systems

    NASA Astrophysics Data System (ADS)

    Brandt, A.; Elsner, N.; Brenke, N.; Golovan, O.; Malyutina, M. V.; Riehl, T.; Schwabe, E.; Würzberg, L.

    2013-02-01

    Faunistic data from a newly designed camera-epibenthic sledge (C-EBS) are presented. These were collected during the joint Russian-German expedition SoJaBio (Sea of Japan Biodiversity Studies) on board the R.V. Akademik Lavrentyev from four transects (A-D) between 460 and 3660 m depth. In total, 244,531 macro- and megafaunal individuals were sampled with the classes Malacostraca (80,851 individuals), Polychaeta (36,253 ind.) and Ophiuroidea (34,004 ind.) being most abundant. Within the Malacostraca, Peracarida (75,716 ind.) were most abundant and within these, the Isopoda were the dominant taxon (27,931 ind.), followed by Amphipoda (21,403 ind.), Cumacea (13,971 ind.) and Tanaidacea (10,830 ind.). Mysidacea (1581 ind.) were least frequent. Bivalvia, Amphipoda, Cumacea and Mysidacea as well as inbenthic meiofaunal Nematoda occurred in higher numbers at the shallower stations and their numbers decreased with increasing depth. Polychaeta, Isopoda, and Tanaidacea, on the contrary, increased in abundance with increasing depth. Only one isopod species was sampled at abyssal depths in the Sea of Japan but at very high abundance: Eurycope spinifrons Gurjanova, 1933 (Asellota: Munnopsidae). Echinoderms occurred frequently at the shallower slope stations. Ophiuroids were dominating, followed by holothurians, and echinoids and asteroids which occurred in lower numbers and primarily at the shallower stations of transects A and B. Only 2163 individual anthozoans were recorded and these were mostly confined to the lower slope. The technical design of a new C-EBS is described. Next to temperature-insulated epi- and suprabenthic samplers, it is equipped with still and video cameras, which deliver information on seabed topography and megafaunal occurrence. Furthermore, Aanderaa CTD and SEAGUARD RCM allow for collection of physical parameters, such as near bottom oxygen composition, temperature and conductivity.

  4. Environmental heterogeneity predicts species richness of freshwater mollusks in sub-Saharan Africa

    NASA Astrophysics Data System (ADS)

    Hauffe, T.; Schultheiß, R.; Van Bocxlaer, B.; Prömmel, K.; Albrecht, C.

    2014-12-01

    Species diversity and how it is structured on a continental scale is influenced by stochastic, ecological, and evolutionary driving forces, but hypotheses on determining factors have been mainly examined for terrestrial and marine organisms. The extant diversity of African freshwater mollusks is in general well assessed to facilitate conservation strategies and because of the medical importance of several taxa as intermediate hosts for tropical parasites. This historical accumulation of knowledge has, however, not resulted in substantial macroecological studies on the spatial distribution of freshwater mollusks. Here, we use continental distribution data and a recently developed method of random and cohesive allocation of species distribution ranges to test the relative importance of various factors in shaping species richness of Bivalvia and Gastropoda. We show that the mid-domain effect, that is, a hump-shaped richness gradient in a geographically bounded system despite the absence of environmental gradients, plays a minor role in determining species richness of freshwater mollusks in sub-Saharan Africa. The western branch of the East African Rift System was included as dispersal barrier in richness models, but these simulation results did not fit observed diversity patterns significantly better than models where this effect was not included, which suggests that the rift has played a more complex role in generating diversity patterns. Present-day precipitation and temperature explain richness patterns better than Eemian climatic condition. Therefore, the availability of water and energy for primary productivity during the past does not influence current species richness patterns much, and observed diversity patterns appear to be in equilibrium with contemporary climate. The availability of surface waters was the best predictor of bivalve and gastropod richness. Our data indicate that habitat diversity causes the observed species-area relationship, and hence, that

  5. Comparative DNA damage and oxidative effects of carcinogenic and non-carcinogenic sediment-bound PAHs in the gills of a bivalve.

    PubMed

    Martins, Marta; Costa, Pedro M; Ferreira, Ana M; Costa, Maria H

    2013-10-15

    Polycyclic aromatic hydrocarbons (PAHs) regarded as carcinogenic and non-carcinogenic to humans are ubiquitous hydrophobic pollutants that tend to be trapped in aquatic sediments. As a consequence of their acknowledged toxicity and pro-mutagenic or even carcinogenic potential, PAHs are deemed prioritary in biomonitoring programmes. Still, the differences between the toxicity of carcinogenic and non-carcinogenic PAHs are poorly known especially, when aquatic organisms are exposed to ecologically-relevant concentrations of these compounds in sediments. Laboratory bioassays with sediments spiked with phenanthrene (Phe) and benzo[b]fluoranthene (B[b]F), non-carcinogenic and carcinogenic PAH, respectively, were conducted and the effects of exposure (related to DNA damage and oxidative stress) were analyzed in the gills of a burrowing clam, Ruditapes decussatus (Bivalvia, Veneridae). To ensure ecological relevance, two contaminant concentrations (termed "low" and "high") were selected in accordance with available PAH sediment quality guidelines. The results showed that, even in "low" concentrations, both compounds caused a likely genotoxic effect in the gills, which is in accordance with the link between PAHs in water. Glutathione S-transferase activity and glutathione biosynthesis appear to be associated with limited lipid peroxidation even though they were insufficient to prevent higher and faster genotoxicity induced by exposure to the carcinogenic B[b]F, comparative to Phe. Overall the findings indicate that low concentrations of sediment-bound PAHs, carcinogenic or not, may be rendered significantly bioavailable to benthic filter-feeders as to induce genotoxicity, revealing that even PAHs considered non-carcinogenic to humans detain a latent, albeit significant, pro-mutagenic hazard to bivalve molluscs. PMID:23969285

  6. Confocal Raman microscopy in sclerochronology: A powerful tool to visualize environmental information in recent and fossil biogenic archives

    NASA Astrophysics Data System (ADS)

    Beierlein, Lars; Nehrke, Gernot; Brey, Thomas

    2015-01-01

    hard parts and skeletons of aquatic organisms often archive information of past environmental conditions. Deciphering such information forms an essential contribution to our understanding of past climate conditions and thus our ability to mitigate the climatic, ecological, and social impacts of a rapidly changing environment. Several established techniques enable the visualization and reliable use of the information stored in anatomical features of such biogenic archives, i.e., its growth patterns. Here, we test whether confocal Raman microscopy (CRM) is a suitable method to reliably identify growth patterns in the commonly used archive Arctica islandica and the extinct species Pygocardia rustica (both Bivalvia). A modern A. islandica specimen from Norway has been investigated to verify the general feasibility of CRM, resulting in highly correlated standardized growth indices (r > 0.96 p < 0.0001) between CRM-derived measurements and measurements derived from the established methods of fluorescence microscopy and Mutvei's solution staining. This demonstrates the general suitability of CRM as a method for growth pattern evaluation and cross-dating applications. Moreover, CRM may be of particular interest for paleoenvironmental reconstructions, as it yielded superior results in the analysis of fossil shell specimens (A. islandica and P. rustica) compared to both Mutvei staining and fluorescence microscopy. CRM is a reliable and valuable tool to visualize internal growth patterns in both modern and fossil calcium carbonate shells that notably also facilitates the assessment of possible diagenetic alteration prior to geochemical analysis without geochemically compromising the sample. We strongly recommend the CRM approach for the visualization of growth patterns in fossil biogenic archives, where conventional methods fail to produce useful results.

  7. The mineralogical responses of marine calcifiers to CO2-induced ocean acidification

    NASA Astrophysics Data System (ADS)

    Ries, J. B.; Cohen, A. L.; McCorkle, D. C.

    2008-12-01

    We have conducted 6-month laboratory experiments to investigate the effect of pCO2-induced reductions in seawater CaCO3 saturation state on biocalcification by 18 aragonitic and calcitic (low-high Mg) taxa representing eight of the major marine calcifying groups: Chlorophyta; Rhodophyta; Crustacea; Bivalvia; Gastropoda; Annelida; Cnidaria; and Echinodermata. The CaCO3 saturation states of the experimental seawaters, constrained by intercalibrated determinations of pH, alkalinity, and DIC, were attained with bubbled air-CO2 mixtures of 400 (ambient), 600, 900, and 2850 ppm pCO2, yielding Ωarag of 2.5 (ambient), 2.0, 1.5, 0.7, respectively. We previously showed that while rates of net calcification obtained from buoyant weighing declined with increasing pCO2 for nearly half of the species investigated, a nearly equal number exhibited constant or, in some cases, increased calcification under moderately (600 ppm) or extremely (900 or 2850 ppm) elevated pCO2. The organisms' investigated in this study secrete various forms of CaCO3, which differ in crystallographic structure and therefore solubility: aragonite and high-Mg are generally more soluble than low-Mg calcite. We have employed powder x-ray diffraction, Raman spectroscopy, inductively-coupled-plasma mass-spectrometry, and scanning electron microscopy to quantify changes in the organisms' skeletal mineralogy (aragonite:calcite ratio) and Mg-content (MgCO3:CaCO3 ratio) that occurred in response to the prescribed reductions in seawater CaCO3 saturation state. We will compare calcification and mineralogical response patterns amongst the organisms to elucidate the role of mineral lability in driving species-specific responses to CO2-induced ocean acidification.

  8. Strong pathways for incorporation of terrestrially derived organic matter into benthic communities

    NASA Astrophysics Data System (ADS)

    McLeod, Rebecca J.; Wing, Stephen R.

    2009-05-01

    In Fiordland, New Zealand, large volumes of organic matter are deposited into the marine environment from pristine forested catchments. Analyses of δ15N, δ13C and δ34S were employed to determine whether these inputs were contributing to marine food webs via assimilation by common macroinvertebrates inhabiting the inner reaches of the fjords. Terrestrially derived organic matter (TOM) had values of δ15N, δ13C and δ34S that were distinct from other carbon source pools, providing sufficient power to quantify the contribution of TOM to the benthic food web. Isotopic values among macroinvertebrates varied significantly, with consistently low values of δ15N, δ13C and δ34S for the abundant deposit feeders Echinocardium cordatum (Echinodermata) and Pectinaria australis (Annelida), indicating assimilation of TOM. High concentrations of bacterial fatty acid biomarkers in E. cordatum, and values of δ13C of these biomarkers similar to TOM (-27 to -30‰) confirmed that TOM is indirectly assimilated by these sea urchins via heterotrophic bacteria. TOM was also found to enter the infaunal food web via chemoautotrophic bacteria that live symbiotically within Solemya parkinsonii (Bivalvia). Echinocardium cordatum, Pectinaria australis and S. parkinsonii comprised up to 33.5% of the biomass of the macroinfaunal community, and thus represent strong pathways for movement of organic matter from the forested catchments into the benthic food web. This demonstration of connectivity among adjacent marine and terrestrial habitats has important implications for coastal land management, and highlights the importance of intact coastal forests to marine ecosystem function.

  9. MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals

    PubMed Central

    Nishihara, Hidenori; Plazzi, Federico; Passamonti, Marco; Okada, Norihiro

    2016-01-01

    SINEs (short interspersed elements) are transposable elements that typically originate independently in each taxonomic clade (order/family). However, some SINE families share a highly similar central sequence and are thus categorized as a SINE superfamily. Although only four SINE superfamilies (CORE-SINEs, V-SINEs, DeuSINEs, and Ceph-SINEs) have been reported so far, it is expected that new SINE superfamilies would be discovered by deep exploration of new SINEs in metazoan genomes. Here we describe 15 SINEs, among which 13 are novel, that have a similar 66-bp central region and therefore constitute a new SINE superfamily, MetaSINEs. MetaSINEs are distributed from fish to cnidarians, suggesting their common evolutionary origin at least 640 Ma. Because the 3′ tails of MetaSINEs are variable, these SINEs most likely survived by changing their partner long interspersed elements for retrotransposition during evolution. Furthermore, we examined the presence of members of other SINE superfamilies in bivalve genomes and characterized eight new SINEs belonging to the CORE-SINEs, V-SINEs, and DeuSINEs, in addition to the MetaSINEs. The broad distribution of bivalve SINEs suggests that at least three SINEs originated in the common ancestor of Bivalvia. Our comparative analysis of the central domains of the SINEs revealed that, in each superfamily, only a restricted region is shared among all of its members. Because the functions of the central domains of the SINE superfamilies remain unknown, such structural information of SINE superfamilies will be useful for future experimental and comparative analyses to reveal why they have been retained in metazoan genomes during evolution. PMID:26872770

  10. Propensity to metal accumulation and oxidative stress responses of two benthic species (Cerastoderma edule and Nephtys hombergii): are tolerance processes limiting their responsiveness?

    PubMed

    Marques, Ana; Piló, David; Araújo, Olinda; Pereira, Fábio; Guilherme, Sofia; Carvalho, Susana; Santos, Maria Ana; Pacheco, Mário; Pereira, Patrícia

    2016-05-01

    The chronic exposure of benthic organisms to metals in sediments can lead to the development of tolerance mechanisms, thus diminishing their responsiveness. This study aims to evaluate the accumulation profiles of V, Cr, Co, Ni, As, Cd, Pb and Hg and antioxidant system responses of two benthic organisms (Cerastoderma edule, Bivalvia; Nephtys hombergii, Polychaeta). This approach will provide clarifications about the ability of each species to signalise metal contamination. Organisms of both species were collected at the Tagus estuary, in two sites with distinct contamination degrees (ALC, slightly contaminated; BAR, highly contaminated). Accordingly, C. edule accumulated higher concentrations of As, Pb and Hg at BAR compared to ALC. However, antioxidant responses of C. edule were almost unaltered at BAR and no peroxidative damage occurred, suggesting adjustment mechanisms to the presence of metals. In contrast, N. hombergii showed a minor propensity to metal accumulation, only signalising spatial differences for As and Pb and accumulating lower concentrations of metals than C. edule. The differences in metal accumulation observed between species might be due to their distinctive foraging behaviour and/or the ability of N. hombergii to minimise the metal uptake. Despite that, the accumulation of As and Pb was on the basis of the polychaete antioxidant defences inhibition at BAR, including CAT, SOD, GR and GPx. The integrated biomarker response index (IBRv2) confirmed that N. hombergii was more affected by metal exposure than C. edule. In the light of current findings, in field-based studies, the information of C. edule as a bioindicator should be complemented by that provided by another benthic species, since tolerance mechanisms to metals can hinder a correct diagnosis of sediment contamination and of the system's health. Overall, the present study contributed to improve the lack of fundamental knowledge of two widespread and common estuarine species, providing

  11. Quantification of diagenetic overprint processes deduced from fossil carbonate shells and laboratory-based hydrothermal alteration experiments

    NASA Astrophysics Data System (ADS)

    Griesshaber, Erika; Casella, Laura; Mavromatis, Vasileios; Dietzel, Martin; Immenhauser, Adrian; Schmahl, Wolfgang

    2016-04-01

    Benthic and nektonic marine biogenic carbonate archives represent the foundation of numerous studies aiming at reconstructions of past climate dynamics and environmental change. However, living organisms are not in thermodynamic equilibrium and create local chemical environments where physiologic processes such as biomineralization takes place. After the death of the organism the former physiologic disequilibrium conditions are not sustained any more and all biological tissues are altered by equilibration according to the surrounding environment: diagenesis. With increasing diagenetic alteration, the biogenic structure and fingerprint fades away and is replaced by inorganic features. Thus, recrystallization of organism-specific microstructure is a clear indicator for diagenetic overprint. Microstructural data, which mirror recrystallization, are of great value for interpreting geochemical proxies for paleo-environment reconstruction. Despite more than a century of research dealing with carbonate diagenesis, many of the controlling processes and factors are only understood in a qualitative manner. One of the main issues is that diagenetically altered carbonates are usually present as the product of a complex preceding diagenetic pathway with an unknown number of intermediate steps. In this contribution we present and discuss laboratory based alteration experiments with the aim to investigate time-series data sets in a controlled manner. We conducted hydrothermal alteration experiments with modern Arctica islandica (bivalvia) and Notosaria nigricans (brachiopoda) in order to mimic diagenetic overprint. We explore first the potential of electron backscattered diffraction (EBSD) measurements together with statistical data evaluation as a tool to quantify diagenetic alteration of carbonate skeletons. Subsequently, we compare microstructural patterns obtained from experimentally altered shell material with those of fossil specimens that have undergone variable degrees of

  12. A molecular-based approach for examining responses of eukaryotes in microcosms to contaminant-spiked estuarine sediments.

    PubMed

    Chariton, Anthony A; Ho, Kay T; Proestou, Dina; Bik, Holly; Simpson, Stuart L; Portis, Lisa M; Cantwell, Mark G; Baguley, Jeffrey G; Burgess, Robert M; Pelletier, Marguerite M; Perron, Monique; Gunsch, Claudia; Matthews, Robin A

    2014-02-01

    Ecotoxicological information for most contaminants is limited to a small number of taxa, and these are generally restricted to comparatively hardy organisms that are readily extractable from test media and easily identifiable. Advances in DNA sequencing can now provide a comprehensive view of benthic invertebrate diversity. The authors applied 454 pyrosequencing to examine the responses of benthic communities in microcosms exposed to sediments with elevated concentrations of triclosan, the endpoint being eukaryl communities that have successfully vertically migrated through the manipulated sediments. The biological communities associated with the 3 treatments (control triclosan, low triclosan [14 mg/kg], and high triclosan [180 mg/kg]) clustered into 3 groups: control/low (n = 6 controls and 4 low), moderate (n = 2 low), and high (n = 5 high). One sample was discarded as an outlier. The most pronounced change as a response to triclosan was the loss of number of metazoan operational taxonomic units (OTUs), indicative of the control/low and moderate groups, with this being most evident in the range of taxa associated with the classes Chromadorea and Bivalvia and the phylum Kinorhyncha. The authors also describe a range of other taxa that aided discrimination between the groups; compare findings with traditionally obtained meio- and macrofaunal communities obtained from the same experiment; and illustrate some of the advantages and limitations associated with both the molecular and traditional approaches. The described approach illustrates the capacity for amplicon sequencing to provide ecologically relevant information that can be used to strengthen an understanding of how sedimentary communities respond to a range of environmental stressors. PMID:24399368

  13. [Abundance and biomass of meiobenthos in Lingdingyang Bay of Pearl River Estuary].

    PubMed

    Zhang, Jing-huai; Gao, Yang; Fang, Hong-da

    2011-10-01

    An investigation was conducted on the meiobenthic abundance and biomass in the Lingdingyang Bay of Pearl River Estuary in July-August 2006 (summer), April 2007 (spring), and October 2007 (autumn). A total of 15 meiobenthic groups were recorded, including Nematoda, Copepoda, Polychaeta, Ostracoda, Kinorhyncha, Amphipoda, Cumacea, Tanaidacea, Gnathostomulida, Nemertea, Gastropoda, Bivalvia, Sipuncula, Echiura, and other unidentified taxa. The average abundance of the meiobenthos in spring, summer, and autumn was 272.1 +/- 281.9, 165.1 +/- 147.1 and 246. 4 +/- 369.3 ind 10 cm(-2), and Nematoda was the most dominant group in abundance, accounting for 86.8%, 83.5%, and 93.4% of the total, respectively, followed by Polychaeta, and benthic Copepoda. The meiobenthic abundance had an uneven vertical distribution. 54.1% of the meibenthos were in 0-2 cm sediments, 35.2% were in 2-5 cm sediments, and 10.8% were in 5-10 cm sediments. 87.4% of nematodes were distributed in 0-5 cm sediments. The average biomass of the meiobenthos in spring, summer, and autumn was 374.6 +/- 346.9, 274.1 +/- 352.2, and 270.8 +/- 396.0 microg 10 cm(-2), and Polychaeta was the most dominant group in biomass, accounting for 30.1%, 46.7% and 46.0%, respectively, followed by Nematoda (25.2%, 20.1%, and 34.0%), and Ostracoda (20.6%, 15.3%, and 14.8%). The horizontal distribution of the meiobenthos had a trend of increasing from north to south, and being higher at east than at west. The meiobenthic abundance and biomass had significant positive correlations with water depth. PMID:22263483

  14. Macroparasites and their communities of the European eel Anguilla anguilla (Linnaeus) in the Czech Republic.

    PubMed

    Moravec, Frantisek; Scholz, Tomas

    2015-01-01

    This paper summarises the results of parasitological examinations of the European eel Anguilla anguilla (Linnaeus) in the Czech Republic, carried out at the Institute of Parasitology, Czech Academy of Sciences (previously the Czechoslovak Academy of Sciences) within the period of 50 years (1958-2008). Even though this survey is limited to the Czech Republic, it provides extensive data probably incomparable with any other study anywhere regarding the number of eels examined and parasites found. A total of 723 eels was examined from 42 localities that belong to all of the three main river drainage systems in the country, i.e. the Elbe, Danube and Oder river basins. Of the 31 species of adult and larval macroparasites including Monogenea (4 species), Trematoda (3), Cestoda (3), Nematoda (11), Acanthocephala (5), Hirudinea (1), Bivalvia (1), Copepoda (1), Branchiura (1) and Acariformes (1), most of them (30) were recorded from the Elbe River basin. These parasites can be divided into three main groups regarding their host specificity: parasites specific for eels (26%), non-specific adult parasites occurring also in other fishes (61%) and non-specific larvae (13%). The highest number (19) of parasite species was recorded in the Mácha Lake fishpond system in northern Bohemia. The parasite communities in eels from the individual localities exhibited large differences in their species composition and diversity depending on local ecological conditions. The parasite fauna of A. anguilla in the Czech Republic is compared with that in other European countries. The nematode Cucullanus egyptae Abdel-Ghaffar, Bashtar, Abdel-Gaber, Morsy, Mehlhorn, Al Quraishy et Mohammed, 2014 is designated as a species inquirenda. PMID:26130652

  15. Evolutionary implications of endosymbiont diversity within lucinid bivalves

    NASA Astrophysics Data System (ADS)

    Garcia, A. M.; Thiessen, M.; Aronowsky, A.; Anderson, L.; Bao, H.; Engel, A.

    2007-12-01

    Bacterial endosymbiosis is widespread among Bivalvia. Symbiosis between lucinid bivalves and sulfur-oxidizing (thiotrophic) bacteria has received recent attention, as lucinids are one of the geologically oldest extant bivalve clades to possess endosymbionts. However, the ecological and evolutionary relationships between host and symbiont are poorly understood, and reconstructing the evolutionary history and geological significance of lucinid endosymbiosis requires additional knowledge and characterization of endosymbiont ecology and taxonomic diversity. Our goal was to characterize the bacterial diversity of a modern lucinid habitat in order to evaluate possible lucinid endosymbiont diversity. Host organisms ( Lucinisca nassula and Phacoides pectinatus) and sediment cores were collected from geochemically reducing and sulfide-rich sea grass beds. PCR amplification and sequencing of bacterial 16S rRNA genes from the sediment cores retrieved 13 major taxonomic groups, including equally dominant Chloroflexi, Delta-, and Gammaproteobacteria, and rare Bacteroides, Acidobacteria, Spirochaetes, and Firmicutes. Less than 2% of the sequences were affiliated with uncultured gammaproteobacterial symbiont groups, but were not closely related to the sequences retrieved from the lucinid gills. Moreover, our analyses uncovered multiple gene sequence populations within an individual, as well as across individuals within the same sampling site. Additional habitat-host-symbiont diversity from three other lucinid taxa and from six geographically distinct habitat sites is also expanding the previously understood diversity of thiotrophic endosymbionts, and specifically that the lucinid symbionts are probably not a monophyletic species. These data suggest that thiotrophic bacteria are recruitable for endosymbiosis and are widely distributed in reducing marine environments. But, because of the diversity of bacteria in any one habitat, symbionts may be metabolically and physiologically

  16. Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

    PubMed Central

    Harmer, Rachel A.; Somerfield, Paul J.; Atkinson, Angus

    2013-01-01

    Background Zooplankton play an important role in our oceans, in biogeochemical cycling and providing a food source for commercially important fish larvae. However, difficulties in correctly identifying zooplankton hinder our understanding of their roles in marine ecosystem functioning, and can prevent detection of long term changes in their community structure. The advent of massively parallel next generation sequencing technology allows DNA sequence data to be recovered directly from whole community samples. Here we assess the ability of such sequencing to quantify richness and diversity of a mixed zooplankton assemblage from a productive time series site in the Western English Channel. Methodology/Principle Findings Plankton net hauls (200 µm) were taken at the Western Channel Observatory station L4 in September 2010 and January 2011. These samples were analysed by microscopy and metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene using the 454 pyrosequencing platform. Following quality control a total of 419,041 sequences were obtained for all samples. The sequences clustered into 205 operational taxonomic units using a 97% similarity cut-off. Allocation of taxonomy by comparison with the National Centre for Biotechnology Information database identified 135 OTUs to species level, 11 to genus level and 1 to order, <2.5% of sequences were classified as unknowns. By comparison a skilled microscopic analyst was able to routinely enumerate only 58 taxonomic groups. Conclusions Metagenetics reveals a previously hidden taxonomic richness, especially for Copepoda and hard-to-identify meroplankton such as Bivalvia, Gastropoda and Polychaeta. It also reveals rare species and parasites. We conclude that Next Generation Sequencing of 18S amplicons is a powerful tool for elucidating the true diversity and species richness of zooplankton communities. While this approach allows for broad diversity assessments of plankton it may become increasingly

  17. Temporal and spatial distribution of the meiobenthic community in Daya Bay, South China Sea

    NASA Astrophysics Data System (ADS)

    Tang, L.; Li, H. X.; Yan, Y.

    2012-04-01

    Spatial and temporal biodiversity patterns of the meiobenthos were studied for the first time in Daya Bay, which is a tropical semi-enclosed basin located in the South China Sea. The abundance, biomass, and composition of the meiobenthos and the basic environmental factors in the bay were investigated. The following 19 taxonomic groups were represented in the meiofauna: Nematoda, Copepoda, Polychaeta, Oligochaeta, Kinorhyncha, Gastrotricha, Ostracoda, Bivalvia, Turbellaria, Nemertinea, Sipuncula, Hydroida, Amphipoda, Cumacea, Halacaroidea, Priapulida, Echinodermata, Tanaidacea, and Rotifera. Total abundance and biomass of the meiobenthos showed great spatial and temporal variation, with mean values of 993.57 ± 455.36 ind cm-2 and 690.51 ± 210.64 μg 10 cm-2, respectively. Nematodes constituted 95.60 % of the total abundance and thus had the greatest effect on meiofauna quantity and distribution, followed by copepods (1.55 %) and polychaetes (1.39 %). Meiobenthos abundance was significantly negatively correlated with water depth at stations (r=-0.747, P<0.05) and significantly negatively correlated with silt-clay content (r=-0.516, P<0.01) and medium diameter (r=-0.499, P<0.01) of the sediment. Similar results were found for correlations of biomass and abundance of nematodes with environmental parameters. Polychaete abundance was positively correlated with the bottom water temperature (r=0.456, P<0.01). Meiobenthos abundance differed significantly among seasons (P<0.05), although no significant difference among stations and the interaction of station × season was detected by two-way ANOVA. In terms of vertical distribution, most of the meiobenthos was found in the surface layer of sediment. This pattern was apparent for nematodes and copepods, but a vertical distribution pattern for polychaetes was not as obvious. Based on the biotic indices and analyses of their correlations and variance, the diversity of this community was likely to be influenced by

  18. The Evolutionary Origins of the Southern Ocean Philobryid Bivalves: Hidden Biodiversity, Ancient Persistence

    PubMed Central

    Jackson, Jennifer A.; Linse, Katrin; Whittle, Rowan; Griffiths, Huw J.

    2015-01-01

    Philobryids (Bivalvia: Arcoida) are one of the most speciose marine bivalve families in the Southern Ocean and are common throughout the Southern Hemisphere. Considering this diversity and their brooding reproductive mode (limiting long-distance dispersal), this family may have been present in the Southern Ocean since its inception. However Philobrya and Adacnarca appear only in the Quaternary fossil record of the Antarctic, suggesting a much more recent incursion. Molecular dating provides an independent means of measuring the time of origin and radiation of this poorly known group. Here we present the first combined molecular and morphological investigation of the Philobryidae in the Southern Ocean. Two nuclear loci (18S and 28S) were amplified from 35 Southern Ocean Adacnarca and Philobrya specimens, with a combined sequence length of 2,282 base pairs (bp). Adacnarca specimens (A. nitens and A. limopsoides) were resolved as a strongly supported monophyletic group. Genus Philobrya fell into two strongly supported groups (‘sublaevis’ and ‘magellanica/wandelensis’), paraphyletic with Adacnarca. The A. nitens species complex is identified as at least seven morpho-species through morphological and genetic analysis of taxon clustering. Phylogenetic analyses resolve Philobryidae as a strongly supported monophyletic clade and sister taxon to the Limopsidae, as anticipated by their classification into the superfamily Limopsoidea. Bayesian relaxed clock analyses of divergence times suggest that genus Adacnarca radiated in the Southern Ocean from the Early Paleogene, while P. sublaevis and P. wandelensis clades radiated in the late Miocene, following the formation of the Antarctic Circumpolar Current. PMID:25853413

  19. In vivo sulfhydryl distribution in brown cells of Mercenaria mercenaria exposed to cadmium

    SciTech Connect

    Zaroogian, G.

    1995-12-31

    Brown cells are found in the red glands of Mercenaria mercenaria (Bivalvia) and have a role in detoxification. Brown cell involvement in metal detoxification is due in part to endogenous glutathione (GSH) and protein bound sulfhydryl (PBSH). During treatment of Mercenaria with 0.5 and 1.0 ppm Cd{sup 2+}, brown cells were analyzed for total sulfhydryl (TSH), PBSH, non-protein bound sulfhydryl (NPSH) and GSH after 0.25, 1, 2, 3, 6, 12 and 20 days. Trend analyses indicated that treatment with 0.5 ppm Cd{sup 2+} caused a continuous increase in PBSH/TSH, whereas NPSH/TSH did not appear to change during 20 days treatment. The GSH/NPSH ratio increased significantly (P<0.01) for 6 days, followed by a significant (P<0.01) continuous decrease to day 20. Treatment with 1.0 ppm Cd{sup 2+} caused an increase in NPSH/TSH during the first 3 days, after which the ratio remained fairly constant to day 20, whereas PBSH/TSH decreased today 2, increased to day 3 and remained unchanged to day 20. The GSH/NPSH ratio remained fairly constant for the first 12 days after which it increased significantly (P<0.01). Histopathological examination after treatment with 1.0 ppm Cd 2{sup +} indicated darkening of the lysosomes during the first 2 days, followed by extensive brown cell sloughing into the tubule lumen and the abundance of small lysosomes at day 3. Sloughing and small lysosome formation continued to a lesser extent to day 20 when granulocyte infiltration and necrosis of the intertubular connective tissue occurred. The data indicate that GSH is more resistant to fluctuations than PBSH which suggests a more rapid synthesis or turnover rate for GSH. The ratio of GSH to PBSH has potential for a biomarker of cadmium exposure and health of Mercenaria.

  20. Haematopoiesis in molluscs: A review of haemocyte development and function in gastropods, cephalopods and bivalves.

    PubMed

    Pila, E A; Sullivan, J T; Wu, X Z; Fang, J; Rudko, S P; Gordy, M A; Hanington, P C

    2016-05-01

    Haematopoiesis is a process that is responsible for generating sufficient numbers of blood cells in the circulation and in tissues. It is central to maintenance of homeostasis within an animal, and is critical for defense against infection. While haematopoiesis is common to all animals possessing a circulatory system, the specific mechanisms and ultimate products of haematopoietic events vary greatly. Our understanding of this process in non-vertebrate organisms is primarily derived from those species that serve as developmental and immunological models, with sparse investigations having been carried out in other organisms spanning the metazoa. As research into the regulation of immune and blood cell development advances, we have begun to gain insight into haematopoietic events in a wider array of animals, including the molluscs. What began in the early 1900's as observational studies on the morphological characteristics of circulating immune cells has now advanced to mechanistic investigations of the cytokines, growth factors, receptors, signalling pathways, and patterns of gene expression that regulate molluscan haemocyte development. Emerging is a picture of an incredible diversity of developmental processes and outcomes that parallels the biological diversity observed within the different classes of the phylum Mollusca. However, our understanding of haematopoiesis in molluscs stems primarily from the three most-studied classes, the Gastropoda, Cephalopoda and Bivalvia. While these represent perhaps the molluscs of greatest economic and medical importance, the fact that our information is limited to only 3 of the 9 extant classes in the phylum highlights the need for further investigation in this area. In this review, we summarize the existing literature that defines haematopoiesis and its products in gastropods, cephalopods and bivalves. PMID:26592965

  1. Body Size Versus Depth: Regional and Taxonomical Variation in Deep-Sea Meio- and Macrofaunal Organisms.

    PubMed

    van der Grient, Jesse M A; Rogers, Alex D

    2015-01-01

    Body size (weight per individual) is an important concept in ecology. It has been studied in the deep sea where a decrease in size with increasing depth has often been found. This has been explained as an adaptation to food limitation where size reduction results in a lowered metabolic rate and a decreased energetic requirement. However, observations vary, with some studies showing an increase in size with depth, and some finding no depth correlation at all. Here, we collected data from peer-reviewed studies on macro- and meiofaunal abundance and biomass, creating two datasets allowing statistical comparison of factors expected to influence body size in meio- and macrofaunal organisms. Our analyses examined the influence of region, taxonomic group and sampling method on the body size of meiofauna and macrofauna in the deep sea with increasing depth, and the resulting models are presented. At the global scale, meio- and macrofaunal communities show a decrease in body size with increasing depth as expected with the food limitation hypothesis. However, at the regional scale there were differences in trends of body size with depth, either showing a decrease (e.g. southwest Pacific Ocean; meio- and macrofauna) or increase (e.g. Gulf of Mexico; meiofauna only) compared to a global mean. Taxonomic groups also showed differences in body size trends compared to total community average (e.g. Crustacea and Bivalvia). Care must be taken when conducting these studies, as our analyses indicated that sampling method exerts a significant influence on research results. It is possible that differences in physiology, lifestyle and life history characteristics result in different responses to an increase in depth and/or decrease in food availability. This will have implications in the future as food supply to the deep sea changes as a result of climate change (e.g. increased ocean stratification at low to mid latitudes and reduced sea ice duration at high latitudes). PMID:26320616

  2. Detecting Subtle Shifts in Ecosystem Functioning in a Dynamic Estuarine Environment.

    PubMed

    Pratt, Daniel R; Lohrer, Andrew M; Thrush, Simon F; Hewitt, Judi E; Townsend, Michael; Cartner, Katie; Pilditch, Conrad A; Harris, Rachel J; van Colen, Carl; Rodil, Iván F

    2015-01-01

    Identifying the effects of stressors before they impact ecosystem functioning can be challenging in dynamic, heterogeneous 'real-world' ecosystems. In aquatic systems, for example, reductions in water clarity can limit the light available for photosynthesis, with knock-on consequences for secondary consumers, though in naturally turbid wave-swept estuaries, detecting the effects of elevated turbidity can be difficult. The objective of this study was to investigate the effects of shading on ecosystem functions mediated by sandflat primary producers (microphytobenthos) and deep-dwelling surface-feeding macrofauna (Macomona liliana; Bivalvia, Veneroida, Tellinidae). Shade cloths (which reduced incident light intensity by ~80%) were deployed on an exposed, intertidal sandflat to experimentally stress the microphytobenthic community associated with the sediment surface. After 13 weeks, sediment properties, macrofauna and fluxes of oxygen and inorganic nutrients across the sediment-water interface were measured. A multivariate metric of ecosystem function (MF) was generated by combining flux-based response variables, and distance-based linear models were used to determine shifts in the drivers of ecosystem function between non-shaded and shaded plots. No significant differences in MF or in the constituent ecosystem function variables were detected between the shaded and non-shaded plots. However, shading reduced the total explained variation in MF (from 64% in non-shaded plots to 15% in shaded plots) and affected the relative influence of M. liliana and other explanatory variables on MF. This suggests that although shade stress may shift the drivers of ecosystem functioning (consistent with earlier investigations of shading effects on sandflat interaction networks), ecosystem functions appear to have a degree of resilience to those changes. PMID:26214854

  3. Identification of Male Gametogenesis Expressed Genes from the Scallop Nodipecten subnodosus by Suppressive Subtraction Hybridization and Pyrosequencing

    PubMed Central

    Llera-Herrera, Raúl; García-Gasca, Alejandra; Abreu-Goodger, Cei; Huvet, Arnaud; Ibarra, Ana M.

    2013-01-01

    Despite the great advances in sequencing technologies, genomic and transcriptomic information for marine non-model species with ecological, evolutionary, and economical interest is still scarce. In this work we aimed to identify genes expressed during spermatogenesis in the functional hermaphrodite scallop Nodipecten subnodosus (Mollusca: Bivalvia: Pectinidae), with the purpose of obtaining a panel of genes that would allow for the study of differentially transcribed genes between diploid and triploid scallops in the context of meiotic arrest and reproductive sterility. Because our aim was to isolate genes involved in meiosis and other testis maturation-related processes, we generated suppressive subtractive hybridization libraries of testis vs. inactive gonad. We obtained 352 and 177 ESTs by clone sequencing, and using pyrosequencing (454-Roche) we maximized the identified ESTs to 34,276 reads. A total of 1,153 genes from the testis library had a blastx hit and GO annotation, including genes specific for meiosis, spermatogenesis, sex-differentiation, and transposable elements. Some of the identified meiosis genes function in chromosome pairing (scp2, scp3), recombination and DNA repair (dmc1, rad51, ccnb1ip1/hei10), and meiotic checkpoints (rad1, hormad1, dtl/cdt2). Gene expression analyses in different gametogenic stages in both sexual regions of the gonad of meiosis genes confirmed that the expression was specific or increased towards the maturing testis. Spermatogenesis genes included known testis-specific ones (kelch-10, shippo1, adad1), with some of these known to be associated to sterility. Sex differentiation genes included one of the most conserved genes at the bottom of the sex-determination cascade (dmrt1). Transcript from transposable elements, reverse transcriptase, and transposases in this library evidenced that transposition is an active process during spermatogenesis in N. subnodosus. In relation to the inactive library, we identified 833

  4. Richness, systematics, and distribution of molluscs associated with the macroalga Gigartina skottsbergii in the Strait of Magellan, Chile: A biogeographic affinity study.

    PubMed

    Rosenfeld, Sebastián; Aldea, Cristian; Mansilla, Andrés; Marambio, Johanna; Ojeda, Jaime

    2015-01-01

    Knowledge about the marine malacofauna in the Magellan Region has been gained from many scientific expeditions that were carried out during the 19th century. However, despite the information that exists about molluscs in the Magellan Region, there is a lack of studies about assemblages of molluscs co-occurring with macroalgae, especially commercially exploitable algae such as Gigartina skottsbergii, a species that currently represents the largest portion of carrageenans within the Chilean industry. The objective of this study is to inform about the richness, systematics, and distribution of the species of molluscs associated with natural beds in the Strait of Magellan. A total of 120 samples from quadrates of 0.25 m(2) were obtained by SCUBA diving at two sites within the Strait of Magellan. Sampling occurred seasonally between autumn 2010 and summer 2011: 15 quadrates were collected at each site and season. A total of 852 individuals, corresponding to 42 species of molluscs belonging to Polyplacophora (9 species), Gastropoda (24), and Bivalvia (9), were identified. The species richness recorded represents a value above the average richness of those reported in studies carried out in the last 40 years in sublittoral bottoms of the Strait of Magellan. The biogeographic affinity indicates that the majority of those species (38%) present an endemic Magellanic distribution, while the rest have a wide distribution in the Magellanic-Pacific, Magellanic-Atlantic, and Magellanic-Southern Ocean. The molluscs from the Magellan Region serve as study models for biogeographic relationships that can explain long-reaching patterns and are meaningful in evaluating possible ecosystemic changes generated by natural causes or related to human activities. PMID:26448707

  5. MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.

    PubMed

    Nishihara, Hidenori; Plazzi, Federico; Passamonti, Marco; Okada, Norihiro

    2016-03-01

    SINEs (short interspersed elements) are transposable elements that typically originate independently in each taxonomic clade (order/family). However, some SINE families share a highly similar central sequence and are thus categorized as a SINE superfamily. Although only four SINE superfamilies (CORE-SINEs, V-SINEs, DeuSINEs, and Ceph-SINEs) have been reported so far, it is expected that new SINE superfamilies would be discovered by deep exploration of new SINEs in metazoan genomes. Here we describe 15 SINEs, among which 13 are novel, that have a similar 66-bp central region and therefore constitute a new SINE superfamily, MetaSINEs. MetaSINEs are distributed from fish to cnidarians, suggesting their common evolutionary origin at least 640 Ma. Because the 3' tails of MetaSINEs are variable, these SINEs most likely survived by changing their partner long interspersed elements for retrotransposition during evolution. Furthermore, we examined the presence of members of other SINE superfamilies in bivalve genomes and characterized eight new SINEs belonging to the CORE-SINEs, V-SINEs, and DeuSINEs, in addition to the MetaSINEs. The broad distribution of bivalve SINEs suggests that at least three SINEs originated in the common ancestor of Bivalvia. Our comparative analysis of the central domains of the SINEs revealed that, in each superfamily, only a restricted region is shared among all of its members. Because the functions of the central domains of the SINE superfamilies remain unknown, such structural information of SINE superfamilies will be useful for future experimental and comparative analyses to reveal why they have been retained in metazoan genomes during evolution. PMID:26872770

  6. Mesozooplankton community development at elevated CO2 concentrations: results from a mesocosm experiment in an Arctic fjord

    NASA Astrophysics Data System (ADS)

    Niehoff, B.; Schmithüsen, T.; Knüppel, N.; Daase, M.; Czerny, J.; Boxhammer, T.

    2013-03-01

    The increasing CO2 concentration in the atmosphere caused by burning fossil fuels leads to increasing pCO2 and decreasing pH in the world ocean. These changes may have severe consequences for marine biota, especially in cold-water ecosystems due to higher solubility of CO2. However, studies on the response of mesozooplankton communities to elevated CO2 are still lacking. In order to test whether abundance and taxonomic composition change with pCO2, we have sampled nine mesocosms, which were deployed in Kongsfjorden, an Arctic fjord at Svalbard, and were adjusted to eight CO2 concentrations, initially ranging from 185 μatm to 1420 μatm. Vertical net hauls were taken weekly over about one month with an Apstein net (55 μm mesh size) in all mesocosms and the surrounding fjord. In addition, sediment trap samples, taken every second day in the mesocosms, were analysed to account for losses due to vertical migration and mortality. The taxonomic analysis revealed that meroplanktonic larvae (Cirripedia, Polychaeta, Bivalvia, Gastropoda, and Decapoda) dominated in the mesocosms while copepods (Calanus spp., Oithona similis, Acartia longiremis and Microsetella norvegica) were found in lower abundances. In the fjord copepods prevailed for most of our study. With time, abundance and taxonomic composition developed similarly in all mesocosms and the pCO2 had no significant effect on the overall community structure. Also, we did not find significant relationships between the pCO2 level and the abundance of single taxa. Changes in heterogeneous communities are, however, difficult to detect, and the exposure to elevated pCO2 was relatively short. We therefore suggest that future mesocosm experiments should be run for longer periods.

  7. Investigation of Li/Ca variations in aragonitic shells of the ocean quahog Arctica islandica, northeast Iceland

    NASA Astrophysics Data System (ADS)

    ThéBault, Julien; SchöNe, Bernd R.; Hallmann, Nadine; Barth, Matthias; Nunn, Elizabeth V.

    2009-12-01

    Interannual and intra-annual variations in lithium-to-calcium ratio were investigated with high temporal resolution in the aragonitic outer shell layer of juvenile Arctica islandica (Mollusca; Bivalvia) collected alive in 2006 off northeast Iceland. Li/Cashell ranged between 7.00 and 11.12 μmol mol-1 and presented well-marked seasonal cycles with minimum values recorded at the annual growth lines; a general pattern was a progressive increase in Li/Cashell from March to May, followed by a plateau in June and a decrease down to minimum values in July-August. Li/Cashell was correlated with δ18Oshell-derived temperature, but the strength of this relationship was weak (r2 < 0.25 and p < 0.05). It covaried significantly with microgrowth increment width and with the discharge from one of the closest rivers. Seasonal variations of Li/Cashell in A. islandica may most likely be explained (1) by calcification rate and/or (2) by significant river inputs of Li-rich silicate particles flowing to the sea as soon as snow melts. In the first case, Li/Cashell may be a useful proxy for addressing seasonal variations of growth rate in bivalves that lack discernable microgrowth patterns. Abrupt decreases of Li/Cashell may, in turn, help identify growth retardations due to harsh environmental conditions. Alternatively, if Li/Cashell variations are linked to particulate Li inputs by rivers, this could be a new proxy for the intensity of mechanical weathering of Icelandic basalts, with interesting perspectives for the reconstruction of frequency and intensity of past jökulhlaups (subglacial outburst floods). Further works, including experimental studies, are needed to test these hypotheses.

  8. The Purisima Formation at Capitola Beach, Santa Cruz County, CA: A Deeper Examination of Pliocene Fossils

    NASA Astrophysics Data System (ADS)

    White, L. D.; Brooks, K.; Chen, R.; Chen, T.; James, T.; Gonzales, J.; Schumaker, D.; Williams, D.

    2005-12-01

    Fossil samples from the Pliocene Purisima Formation at Capitola Beach in Santa Cruz County, CA were collected in July-August 2005. The Purisima Formation composes the bulk of the cliffs exposed at Capitola Beach and a rich assemblage of well-preserved fossils occur in gray to brown sandstone and siltstone. Erosion of the cliff face averages 0.3 meter/year and fresh cliff falls in the winter and spring months of 2005 provided an excellent opportunity to resample the Capitola Beach section of the Purisima Formation previously documented by Perry (1988). Organisms were identified from information in Perry (1988) and were compared with collections at the California Academy of Sciences. The most abundant fossils found are from the phylum Mollusca, classes Bivalvia and Gastropoda. Abundant bivalve taxa are: Anadara trilineata, Clinocardium meekianum, Macoma sp., Protothaca staleyi, and Tresus pajaroanus. Also common are the gastropods, Calyptraea fastigata, Crepdiula princeps, Mitrella gausapata, Nassarius grammatus, Nassarius californianus, Natica clausa, and Olivella pedroana. Less common invertebrate fossils are from the phylum Echinodermata ( Dendraster sp., the extinct fossil sand dollar) and from the phylum Arthropoda ( Crustacea), crab fragments ( Cancer) and barnacles ( Balanus). Because numerous fossils are concentrated as fragments in shell beds, Norris (1986) and Perry (1988) believe many were redeposited as storm beds during strong current events that promoted rapid burial. In contrast, whale and other vertebrate bones are common in certain horizons and their presence may be related to the conditions that promoted phosphate mineralization, such as episodes of low sedimentation rates and prolonged exposure on the seafloor (Föllmi and Garrison, 1991). The bone beds, together with the rich infaunal and epifaunal invertebrate assemblages, represent a community of invertebrate organisms that thrived in a shallow marine sea during the Pliocene epoch, approximately

  9. Parasitological survey of mangrove oyster, Crassostrea rhizophorae, in the Pacoti River Estuary, Ceará State, Brazil.

    PubMed

    Sabry, Rachel Costa; Gesteira, Tereza Cristina Vasconcelos; Magalhães, Aimê Rachel Magenta; Barracco, Margherita Anna; Guertler, Cristhiane; Ferreira, Liana Pinho; Vianna, Rogério Tubino; da Silva, Patrícia Mirella

    2013-01-01

    The mangrove oyster, Crassostrea rhizophorae (Bivalvia, Ostreidae) is commonly collected by fisherwomen in the estuaries of the Ceará State (CE), Northeastern Brazil. Despite the socioeconomic importance of this natural resource, there are few studies on the health of the oysters in this region. This study aimed to survey pathological changes in the mangrove oyster C. rhizophorae in the estuary of the Pacoti River, CE. Adult oysters were collected in August 2008 (N=450) and December 2009 (N=450) at three sites of the Pacoti estuary and in 2010 (N=600) samplings were done quarterly at one site which has showed the higher prevalence de Perkinsus. Macroscopical and histological analyses were used to evaluate pathological changes, Ray's Fluid Thioglycollate Medium (RFTM) to detect Perkinsus spp. and polymerase chain reactions (PCR) and DNA sequencing to identify Perkinsus species. In 2009, RFTM assay detected Perkinsus sp. infecting the tissues of C. rhizophorae with low prevalences of 1.3%, 6.7% e 7.3% in sites 1, 2 and 3, respectively, and in 2010, in site 3, prevalence was 2% (12 of 600 oysters). PCR did not confirm any positive case in 2009 and only 5 in 2010. The phylogenetic analyses strongly indicate that the Perkinsus species infecting oysters C. rhizophorae of this study belongs to Perkinsus beihaiensis. The histology confirmed 11 cases of Perkinsus sp. infecting the C. rhizophorae in 2009, and only two cases in 2010. Nematopsis sp. was the protozoan observed with greater prevalence (up 96.7%). Other found protozoa were: Trichodina, Sphenophrya, Ancistrocoma - like and an unknown ovarian parasite. The metazoa found were the polychaete Polydora with high prevalences, a turbellarian, possibly of the genus Urastoma, an unidentified digenean metacercariae and larvae of cestode Tylocephalum. A continuous monitoring of diseases in bivalves from this natural population is recommended, since the phylogenetic analyses indicate the occurrence of P. beihaiensis

  10. Wetland macroinvertebrates of Prentiss Bay, Lake Huron, Michigan: diversity and functional group composition

    USGS Publications Warehouse

    Merritt, R.W.; Benbow, M.E.; Hudson, P.L.

    2002-01-01

    The Great Lakes support many fish and waterbirds that depend directly or indirectly on coastal wetlands during some portion of their life cycle. It is known that macroinvertebrates make up an important part of wetland food webs and ecosystem function; however, our understanding of species distribution within and among wetlands has only recently received attention. We investigated the macroinvertebrates of a freshwater marsh (Prentiss Bay) in the Les Chenaux Island Area of Northern Lake Huron, Michigan. Macroinvertebrate taxa diversity and functional feeding group composition were compared between two habitats. A shallow depositional habitat with higher vegetation diversity and little wave action was compared to a deeper erosional habitat with fewer plant species and more wave action. A total of 83 taxa were collected over the summer of 1996, representing two phyla (Arthropoda and Mollusca) and five classes (Arachnida, Bivalvia, Malacostraca, Gastropoda and Insecta). A total of 79 genera were identified, with 92% being insects (39 families composed of at least 73 genera). Of the total, 42 insect genera were common to both habitats,while relatively fewer were collected exclusively from the erosional compared the depositional habitat. When habitats were pooled, predators comprised about 50% of the functional group taxa, while gathering collectors and shredders each were about 20%. Filtering collectors and scrapers each represented < 10%. When comparing habitats, there was a relatively higher percentage of predators and shredders in the depositional habitat, while all other functional groups were lower. These data suggest that vegetation diversity, depth and wave action affect taxa composition and functional group organization of the Prentiss Bay marsh.

  11. Compound-Specific Amino Acid Isotopic Analysis of Benthic Food Webs in the Chukchi Sea

    NASA Astrophysics Data System (ADS)

    Zhang, M.; Cooper, L. W.; Biasatti, D. M.; Grebmeier, J. M.

    2014-12-01

    The Chukchi Sea is known for locally high standing stocks of benthic macrofauna and strong coupling between pelagic-benthic components of the ecosystem. However, benthic food structure is not fully understood, due to varied sources of particulate organic matter (POM) and the high diversity of benthic invertebrates. We provide the first demonstration of the application of compound-specific amino acid isotope analysis to study the dietary sources and trophic structure for this Arctic marginal sea. About 20 stations in Chukchi Sea were sampled during cruises in August of 2012 and 2013. At each station, phytoplankton, POM and benthic fauna were collected, processed and analyzed using GC-C-IRMS (gas chromatography-combustion-isotope ratio mass spectrometry). Among benthic fauna, dominant species included the following taxonomic groups: Ophiuroidea, Amphipoda, Polychaeta, Gastropoda, Bivalvia, and Cnidaria. The benthic fauna showed similar patterns of individual amino acid δ13C, with glycine the most enriched in 13C and leucine the most depleted in 13C. Specific amino acids including phenylalanine showed spatial variability in δ13C and δ15N values within the sampled area, indicating contributions of different dietary sources including phytoplankton, sea ice algae, benthic algae and terrestrial organic materials. δ15N values of individual amino acids such as the difference between glutamic acid and phenylalanine, i.e. Δ15Nglu-phe (δ15Nglu - δ15Nphe), were also used to identify trophic levels of benthic invertebrates relative to estimates available from bulk δ15N values. These data will ultimately be used to evaluate the spatial variability of organic carbon sources and trophic level interactions of dominant benthic species in the Chukchi Sea.

  12. Richness, systematics, and distribution of molluscs associated with the macroalga Gigartina skottsbergii in the Strait of Magellan, Chile: A biogeographic affinity study

    PubMed Central

    Rosenfeld, Sebastián; Aldea, Cristian; Mansilla, Andrés; Marambio, Johanna; Ojeda, Jaime

    2015-01-01

    Abstract Knowledge about the marine malacofauna in the Magellan Region has been gained from many scientific expeditions that were carried out during the 19th century. However, despite the information that exists about molluscs in the Magellan Region, there is a lack of studies about assemblages of molluscs co-occurring with macroalgae, especially commercially exploitable algae such as Gigartina skottsbergii, a species that currently represents the largest portion of carrageenans within the Chilean industry. The objective of this study is to inform about the richness, systematics, and distribution of the species of molluscs associated with natural beds in the Strait of Magellan. A total of 120 samples from quadrates of 0.25 m2 were obtained by SCUBA diving at two sites within the Strait of Magellan. Sampling occurred seasonally between autumn 2010 and summer 2011: 15 quadrates were collected at each site and season. A total of 852 individuals, corresponding to 42 species of molluscs belonging to Polyplacophora (9 species), Gastropoda (24), and Bivalvia (9), were identified. The species richness recorded represents a value above the average richness of those reported in studies carried out in the last 40 years in sublittoral bottoms of the Strait of Magellan. The biogeographic affinity indicates that the majority of those species (38%) present an endemic Magellanic distribution, while the rest have a wide distribution in the Magellanic-Pacific, Magellanic-Atlantic, and Magellanic-Southern Ocean. The molluscs from the Magellan Region serve as study models for biogeographic relationships that can explain long-reaching patterns and are meaningful in evaluating possible ecosystemic changes generated by natural causes or related to human activities. PMID:26448707

  13. Dietary habits of invasive Ponto-Caspian gobies in the Croatian part of the Danube River basin and their potential impact on benthic fish communities.

    PubMed

    Piria, Marina; Jakšić, Goran; Jakovlić, Ivan; Treer, Tomislav

    2016-01-01

    Invasive Ponto-Caspian (P-C(1)) gobies have recently caused dramatic changes in fish assemblage structures throughout the Danube basin. While their presence in the Croatian part of the basin has been noted and distribution studied, their dietary habits and impacts on native fish communities have, until now, been unknown. In 2011, 17 locations in the Sava River Basin were sampled for fish and 15 for benthic invertebrates. Fish population monitoring data, available for nine seasons (2003-2006 and 2010-2014) and 12 locations, were used to analyse the impacts of P-C gobies on benthic fish abundance. Gut content analysis indicates that the monkey goby Neogobius fluviatilis diet is very diverse, but dominated by Trichoptera, Chironomidae, Bivalvia and Odonata. The diet overlaps considerably with the round goby Neogobius melanostomus diet, although Gastropoda are dominant in the latter's diet. Small fish and Gammarus sp. dominate the bighead goby Ponticola kessleri diet. Comparison of gut content with the prey available in the environment indicates that monkey and round gobies exhibit preference for Trichoptera, Megaloptera and Coleoptera, and bighead goby for Trichoptera, Gammarus sp. and Pisces. P-C gobies in the Sava River are spreading upstream, towards the reaches with lower fish diversity. Analyses indicate potentially positive impacts of P-C gobies' presence on some fish populations: round and bighead goby on Balkan golden loach Sabanejewia balcanica and monkey goby on common carp Cyprinus carpio, crucian carp Carassius carassius, burbot Lota lota and Balkan loach Cobitis elongata. However, there are also indications that bighead and round goby could adversely impact the native chub Squalius cephalus and zingel Zingel zingel populations, respectively. As P-C gobies are still in the expansionary period of invasion and the ecosystem still adapting to new circumstances, continued monitoring of fish population dynamics in the Sava basin is needed to determine the

  14. Detecting Subtle Shifts in Ecosystem Functioning in a Dynamic Estuarine Environment

    PubMed Central

    Pratt, Daniel R.; Lohrer, Andrew M.; Thrush, Simon F.; Hewitt, Judi E.; Townsend, Michael; Cartner, Katie; Pilditch, Conrad A.; Harris, Rachel J.; van Colen, Carl; Rodil, Iván F.

    2015-01-01

    Identifying the effects of stressors before they impact ecosystem functioning can be challenging in dynamic, heterogeneous ‘real-world’ ecosystems. In aquatic systems, for example, reductions in water clarity can limit the light available for photosynthesis, with knock-on consequences for secondary consumers, though in naturally turbid wave-swept estuaries, detecting the effects of elevated turbidity can be difficult. The objective of this study was to investigate the effects of shading on ecosystem functions mediated by sandflat primary producers (microphytobenthos) and deep-dwelling surface-feeding macrofauna (Macomona liliana; Bivalvia, Veneroida, Tellinidae). Shade cloths (which reduced incident light intensity by ~80%) were deployed on an exposed, intertidal sandflat to experimentally stress the microphytobenthic community associated with the sediment surface. After 13 weeks, sediment properties, macrofauna and fluxes of oxygen and inorganic nutrients across the sediment-water interface were measured. A multivariate metric of ecosystem function (MF) was generated by combining flux-based response variables, and distance-based linear models were used to determine shifts in the drivers of ecosystem function between non-shaded and shaded plots. No significant differences in MF or in the constituent ecosystem function variables were detected between the shaded and non-shaded plots. However, shading reduced the total explained variation in MF (from 64% in non-shaded plots to 15% in shaded plots) and affected the relative influence of M. liliana and other explanatory variables on MF. This suggests that although shade stress may shift the drivers of ecosystem functioning (consistent with earlier investigations of shading effects on sandflat interaction networks), ecosystem functions appear to have a degree of resilience to those changes. PMID:26214854

  15. Carbon Sequestration Potential in Stands under the Grain for Green Program in Southwest China

    PubMed Central

    Chen, Xiangang; Luo, Yunjian; Zhou, Yongfeng; Lu, Mei

    2016-01-01

    The Grain for Green Program (GGP) is the largest afforestation and reforestation project in China in the early part of this century. To assess carbon sequestration in stands under the GGP in Southwest China, the carbon stocks and their annual changes in the GGP stands in the region were estimated based on the following information: (1) collected data on the annually planted area of each tree species under the GGP in Southwest China from 1999 to 2010; (2) development of empirical growth curves and corresponding carbon estimation models for each species growing in the GPP stands; and (3) parameters associated with the stands such as wood density, biomass expansion factor, carbon fraction and the change rate of soil organic carbon content. Two forest management scenarios were examined: scenario A, with no harvesting, and scenario B, with logging at the customary rotation followed by replanting. The results showed that by the years 2020, 2030, 2040, 2050 and 2060, the expected carbon storage of the GGP stands in Southwest China is 139.58 TgC, 177.50–207.55 TgC, 196.86–259.65 TgC, 240.45–290.62 TgC and 203.22–310.03 TgC (T = 1012), respectively. For the same years, the expected annual change in carbon stocks is 7.96 TgCyr−1, −7.95–5.95 TgCyr−1, −0.10–4.67 TgCyr−1, 4.31–2.24 TgCyr−1 and −0.02–1.75 TgCyr−1, respectively. This indicates that the stands significantly contribute to forest carbon sinks in this region. In 2060, the estimated carbon stocks in the seven major species of GGP stands in Southwest China are 4.16–13.01 TgC for Pinus armandii, 6.30–15.01 TgC for Pinus massoniana, 11.51–13.44 TgC for Cryptomeria fortunei, 15.94–24.13 TgC for Cunninghamia lanceolata, 28.05 TgC for Cupressus spp., 5.32–15.63 TgC for Populus deltoides and 5.87–14.09 TgC for Eucalyptus spp. The carbon stocks in these seven species account for 36.8%–41.4% of the total carbon stocks in all GGP stands over the next 50 years. PMID:26959645

  16. Carbon Sequestration Potential in Stands under the Grain for Green Program in Southwest China.

    PubMed

    Chen, Xiangang; Luo, Yunjian; Zhou, Yongfeng; Lu, Mei

    2016-01-01

    The Grain for Green Program (GGP) is the largest afforestation and reforestation project in China in the early part of this century. To assess carbon sequestration in stands under the GGP in Southwest China, the carbon stocks and their annual changes in the GGP stands in the region were estimated based on the following information: (1) collected data on the annually planted area of each tree species under the GGP in Southwest China from 1999 to 2010; (2) development of empirical growth curves and corresponding carbon estimation models for each species growing in the GPP stands; and (3) parameters associated with the stands such as wood density, biomass expansion factor, carbon fraction and the change rate of soil organic carbon content. Two forest management scenarios were examined: scenario A, with no harvesting, and scenario B, with logging at the customary rotation followed by replanting. The results showed that by the years 2020, 2030, 2040, 2050 and 2060, the expected carbon storage of the GGP stands in Southwest China is 139.58 TgC, 177.50-207.55 TgC, 196.86-259.65 TgC, 240.45-290.62 TgC and 203.22-310.03 TgC (T = 1012), respectively. For the same years, the expected annual change in carbon stocks is 7.96 TgCyr-1, -7.95-5.95 TgCyr-1, -0.10-4.67 TgCyr-1, 4.31-2.24 TgCyr-1 and -0.02-1.75 TgCyr-1, respectively. This indicates that the stands significantly contribute to forest carbon sinks in this region. In 2060, the estimated carbon stocks in the seven major species of GGP stands in Southwest China are 4.16-13.01 TgC for Pinus armandii, 6.30-15.01 TgC for Pinus massoniana, 11.51-13.44 TgC for Cryptomeria fortunei, 15.94-24.13 TgC for Cunninghamia lanceolata, 28.05 TgC for Cupressus spp., 5.32-15.63 TgC for Populus deltoides and 5.87-14.09 TgC for Eucalyptus spp. The carbon stocks in these seven species account for 36.8%-41.4% of the total carbon stocks in all GGP stands over the next 50 years. PMID:26959645

  17. Effect of sediment settling on controlling golden mussel invasion in water transfer project

    NASA Astrophysics Data System (ADS)

    Xu, Mengzhen; Wang, Zhaoyin; Bogen, Jim; Pan, Baozhu

    2013-04-01

    Inter-basin water transfer projects have been widely used to solve uneven distribution of water resources and water shortage in China. Along with the transferring of water resources, golden mussel (Limnoperna fortunei), the filter-collector macro-invertebrate species originating from southern China has also been inadvertently transferred to new aquatic environment, resulting in quick and uncontrolled spread of the species. The golden mussels are invasive by nature and endowed with a strong byssus for attaching onto their habitat, allowing them to easily invade natural and artificial aquatic systems, which was resulted in high-density golden mussel attachment that causes serious bio-fouling. Invasion and bio-fouling by golden mussels in water transfer systems has drawn attention widely because it has resulted in high resistance to water flow, corrosion of pipe walls and even clogging of tunnels, as well as causing water pollution and ecological imbalance in the regions that receive water infested with golden mussels. Field investigation was conducted along the East River, which is the main drinking water resource for Cantong province and Hongkong, China, to study the natural habitats of golden mussels. Surveys of water transfer tunnels which carry water from the East River to several big cities in Cantong province were done to study golden mussel invasion and attachment in tunnels. It is found that in the natural habitat, golden mussels mainly attach to bedrock and bank stones and solid surfaces facing upstream, while no golden mussels are attached on the surfaces facing downstream and suffering sediment deposition. In the water transfer tunnels, golden mussel attachment densities of 40,000 individuals/m2 mainly occurred on the portion of tunnel walls which face downwards and thus avoid sedimentation. An experiment was designed to study the effect of sediment settling on golden mussel attachment. The results showed that settling of fine sediment particles affects

  18. Three-year study of fast-growing trees in degraded soils amended with composts: Effects on soil fertility and productivity.

    PubMed

    Madejón, Paula; Alaejos, Joaquin; García-Álbala, José; Fernández, Manuel; Madejón, Engracia

    2016-03-15

    Currently, worries about the effects of intensive plantations on long-term nutrient supply and a loss of productivity have risen. In this study two composts were added to degraded soils where this type of intensive crops were growing, to avoid the soil fertility decrease and try to increase biomass production. For the experiment, two degraded soils in terms of low organic carbon content and low pH were selected in South-West Spain: La Rábida (RA) and Villablanca (VI) sites. Both study sites were divided into 24 plots. In RA, half of the plots were planted with Populus x canadensis "I-214"; the other half was planted with Eucalyptus globulus. At the VI site, half of the plots were planted with Paulownia fortunei, and the other plots were planted with Eucalyptus globulus. For each tree and site, three treatments were established (two organic composts and a control without compost), with four replications per treatment. The organic amendments were "alperujo" compost, AC, a solid by-product from the extraction of olive oil, and BC, biosolid compost. During the three years of experimentation, samples of soils and plants were analyzed for studying chemical and biochemical properties of soil, plant growth and plant nutritional status and biomass production. The composts increased total organic carbon, water-soluble carbon, nutrients and pH of soil only in the most acidic soil. Soil biochemical quality was calculated with the geometric mean of the enzymatic activities (Dehydrogenase, β-glucosidase, Phosphatase and Urease activities) determined in soils. The results showed a beneficial improvement in comparison with soils without compost. However, the best results were found in the growth and biomass production of the studied trees, especially in Eucalyptus. Nutritional levels of leaves of the trees were, in general, in the normal established range for each species, although no clear effect of the composts was observed. The results of this study justify the addition of

  19. Cold hardiness increases with age in juvenile Rhododendron populations

    PubMed Central

    Lim, Chon-Chong; Krebs, Stephen L.; Arora, Rajeev

    2014-01-01

    Winter survival in woody plants is controlled by environmental and genetic factors that affect the plant’s ability to cold acclimate. Because woody perennials are long-lived and often have a prolonged juvenile (pre-flowering) phase, it is conceivable that both chronological and physiological age factors influence adaptive traits such as stress tolerance. This study investigated annual cold hardiness (CH) changes in several hybrid Rhododendron populations based on Tmax, an estimate of the maximum rate of freezing injury (ion leakage) in cold-acclimated leaves from juvenile progeny. Data from F2 and backcross populations derived from R. catawbiense and R. fortunei parents indicated significant annual increases in Tmax ranging from 3.7 to 6.4°C as the seedlings aged from 3 to 5 years old. A similar yearly increase (6.7°C) was observed in comparisons of 1- and 2-year-old F1 progenies from a R. catawbiense × R. dichroanthum cross. In contrast, CH of the mature parent plants (>10 years old) did not change significantly over the same evaluation period. In leaf samples from a natural population of R. maximum, CH evaluations over 2 years resulted in an average Tmax value for juvenile 2- to 3-year-old plants that was 9.2°C lower than the average for mature (~30 years old) plants. A reduction in CH was also observed in three hybrid rhododendron cultivars clonally propagated by rooted cuttings (ramets)—Tmax of 4-year-old ramets was significantly lower than the Tmax estimates for the 30- to 40-year-old source plants (ortets). In both the wild R. maximum population and the hybrid cultivar group, higher accumulation of a cold-acclimation responsive 25 kDa leaf dehydrin was associated with older plants and higher CH. The feasibility of identifying hardy phenotypes at juvenile period and research implications of age-dependent changes in CH are discussed. PMID:25360138

  20. Spatial distribution of diverse cold seep communities living on various diapiric structures of the southern Barbados prism

    NASA Astrophysics Data System (ADS)

    Olu, K.; Sibuet, M.; Harmegnies, F.; Foucher, J.-P.; Fiala-Médioni, A.

    Three sectors of the south Barbados prism between 1000 and 2000 m depth were explored by the French submersible Nautile. Chemosynthesis-based benthic communities were discovered on several structures affected by diapirism, including mud volcanoes, domes and an anticlinal ridge. The communities are associated with the expulsion of methane-rich fluids which is a wide-spread process in the area. These communities are dominated by large bivalves and vestimentiferans which harbour chemoautotrophic symbiotic bacteria. The symbiotic bivalves include two species of Mytilidae and one of Vesicomyidae, with dominance of a methanotrophic mussel. Cartography of the benthic communities, interpretation of thermal measurements and observation of sedimentary patterns have been used to define the life habits of each of the three species of symbiotic bivalves. Each species has a characteristic preference for different conditions of edaphic and fluid flow: the dominant methanotrophic mussel appears to require high velocity vents and hard substratum. The vesicomyids and the other species of mussel are able to take up sulfide from the sediments, and so are associated with low seepages, but also require soft sediment. The three bivalve species are assumed successively to colonize the top of a diapiric ridge, in a succession related to the temporal evolution of fluid flow and sedimentation. The composition of the bivalve assemblages, their densities and biomasses all differ between the several mud volcanoes and domes studied, and these parameters are thought to be related to the spatial and temporal variations of fluid expulsion through the structures, and the lithification processes linked to fluid expulsion. One very active dome is at present colonized by an exceptionally large and dense population of the methanotrophic mussel. In contrast, communities in another area, on the domes and volcanoes that are currently inactive, were colonized by only a few living vesicomyids and mussels

  1. A shell-derived time history of bomb {sup 14}C on Georges Bank and its Labrador Sea implications

    SciTech Connect

    Weidman, C.R.; Jones, G.A.

    1993-08-15

    Bomb-produced radiocarbon has been used in the past as an important tracer of ocean circulation and as a valuable tool for calculating CO{sub 2} air-sea exchange. However, previous studies of the ocean`s time-varying bomb {sup 14}C record have been confined exclusively to analyzing banded corals, and thus their application has been limited to the lower latitudes. The first time history of bomb {sup 14}C from the high-latitude North Atlantic Ocean is obtained from a 54-year-old mollusc specimen, (Bivalvia) Arctica islandica, which was collected live from Georges Bank (41{degrees}N) in 1990. The annual growth bands of its shell were analyzed for {Delta}{sup 14}C using accelerator mass spectrometry, producing a {Delta}{sup 14}C time history from 1939 to 1990. The depleted condition of the Georges Bank bomb {sup 14}C signal relative to two coral-derived North Atlantic {Delta}{sup 14}C time histories suggests a significant deepwater source for the waters on Georges Bank. Supported by previous work linking the origin of waters on Georges Bank to the Labrador Sea, the {Delta}{sup 14}C budget on Georges Bank is modeled as Labrador Sea water, which largely becomes confined to the shelf and partially equilibrates with the atmosphere during a 1-year transit time from the Labrador Sea to Georges Bank. This model is also used to estimate a time history of bomb {sup 14}C for the Labrador Sea. Prebomb {Delta}{sup 14}C values calculated for the surface Labrador Sea suggest that a greater inventory of bomb {sup 14}C has accumulated here than has previously been reported. Deduced variations in the ventilation and/or {sup 14}CO{sub 2} uptake rates in the Labrador Sea correspond with observed changes in surface salinity of the Labrador Sea, suggesting a reduction in deepwater formation during the late 1960s and 1970s. 59 refs., 11 figs., 2 tabs.

  2. Calcium mobilisation following shell damage in the Pacific oyster, Crassostrea gigas.

    PubMed

    Sillanpää, J K; Ramesh, K; Melzner, F; Sundh, H; Sundell, K

    2016-06-01

    Shell growth of oysters requires calcium uptake from the environment and transport to the area of shell formation. A shell regeneration assay in combination with radiolabelled calcium was used to investigate uptake and distribution of calcium to different tissues and hemolymph fractions in Pacific oysters, Crassostrea gigas (Bivalvia, Ostreoida). Oysters were notched at the shell margin and subsequently sampled for hemolymph and grading of shell regeneration during a two week experimental period. Half of the oysters were additionally exposed to (45)Ca and sampled for hemolymph and tissues. Total plasma calcium concentrations increased in notched oysters compared to controls on 1, 2 and 7days after notching. A decrease in plasma calcium levels was apparent on day 4, for both total and ionic calcium. The shell regeneration assay in the notched oysters resulted in a visible deposition of CaCO3 onto the regenerate from day 7 onwards. This was coinciding with an increased uptake of total calcium on days 11 and 14 as well as free, i.e. ionic and ligand-bound calcium, on day 14. At day 1, notching also increased calcium uptake into the mantle tissues, in areas above the notch and near the hinge. During the experiment, both the total hemocyte count and the number of granulocytes increased in notched compared to control oysters. The present study suggests that induced shell damage results in a dynamic regulation of the calcium uptake from the environment and the distribution of calcium within the body, starting directly after notching. Increases in both total calcium concentrations and uptake rates coincided with the visible depositions of CaCO3 on the regenerate shell. C. gigas was found to transport calcium mainly in the ionic form in the hemolymph, with only minor parts being bound to proteins or smaller ligands. Hemolymph measurement also revealed that C. gigas is able to regulate the extracellular concentrations of calcium and potassium. The changes in plasma calcium

  3. Transcriptome analysis of neoplastic hemocytes in soft-shell clams Mya arenaria: Focus on cell cycle molecular mechanism☆

    PubMed Central

    Siah, Ahmed; McKenna, Patty; Berthe, Franck C.J.; Afonso, Luis O.B.; Danger, Jean-Michel

    2013-01-01

    In North America, a high mortality of soft-shell clams Mya arenaria was found to be related to the disease known as disseminated neoplasia (DN). Disseminated neoplasia is commonly recognized as a tetraploid disorder related to a disruption of the cell cycle. However, the molecular mechanisms by which hemocytes of clams are transformed in the course of DN remain by far unknown. This study aims at identifying the transcripts related to DN in soft shell clams’ hemocytes using next generation of sequencing (Illumina HiSeq2000). This study mainly focuses on transcripts and molecular mechanisms involved in cell cycle. Using Illumina next generation of sequencing, more than 95,399,159 reads count with an average length of 45  bp was generated from three groups of hemocytes: (1) a healthy group with less than 10% of tetraploid cells; (2) an intermediate group with tetraploid hemocytes ranging between 10% and 50% and (3) a diseased group with more than 50% of tetraploid cells. After the reads were cleaned by removing the adapters, de novo assembly was performed on the sequences and more than 73,696 contigs were generated with a mean contig length estimated at 585 bp ranging from 189 bp to 14,773 bp. Once a Blastx search against NCBI Non Redundant database was performed and the duplicates removed, 18,378 annotated sequences matched known sequences, 3078 were hypothetical and 9002 were uncharacterized sequences. Fifty percent and 41% of known sequences match sequences from Mollusca and Gastropoda respectively. Among the bivalvia, 33%, 17%, 17% and 15% of the contigs match sequences from Ostreoida, Veneroida, Pectinoida and Mytiloida respectively. Gene ontology analysis showed that metabolic, cellular, transport, cell communication and cell cycle represent 33%, 15%, 9%, 8.5% and 7% respectively of the total biological process. Approximately 70% of the component process is related to intracellular process and 15% is linked to protein and ribonucleoprotein complex

  4. Unexpectedly higher metazoan meiofauna abundances in the Kuril-Kamchatka Trench compared to the adjacent abyssal plains

    NASA Astrophysics Data System (ADS)

    Schmidt, Christina; Martínez Arbizu, Pedro

    2015-01-01

    We studied meiofauna standing stocks and community structure in the Kuril-Kamchatka Trench and its adjacent abyssal plains in the northwestern Pacific Ocean. In general, the Nematoda were dominant (93%) followed by the Copepoda (4%). Nematode abundances ranged from 87% to 96%; those of copepods from 2% to 7%. The most diverse deployment yielded 17 taxa: Acari, Amphipoda, Annelida, Bivalvia, Coelenterata, Copepoda, Cumacea, Gastrotricha, Isopoda, Kinorhyncha, Loricifera, Nematoda, Ostracoda, Priapulida, Tanaidacea, Tantulocarida, and Tardigrada. Nauplii were also present. Generally, the trench slope and the southernmost deployments had the highest abundances (850-1392 individuals/cm2). The results of non-metric multidimensional scaling indicated that these deployments were similar to each other in meiofauna community structure. The southernmost deployments were located in a zone of higher particulate organic carbon (POC) flux (g Corg m-2 yr-1), whereas the trench slope should have low POC flux due to depth attenuation. Also, POC and abundance were significantly correlated in the abyssal plains. This correlation may explain the higher abundances at the southernmost deployments. Lateral transport was also assumed to explain high meiofauna abundances on the trench slope. Abundances were generally higher than expected from model results. ANOSIM revealed significant differences between the trench slope and the northern abyssal plains, between the central abyssal plains and the trench slope, between the trench slope and the southern abyssal plains, between the central and the southern abyssal plains, and between the central and northern deployments. The northern and southern abyssal plains did not differ significantly. In addition, a U-test revealed highly significant differences between the trench-slope and abyssal deployments. The taxa inhabited mostly the upper 0-3 cm of the sediment layer (Nematoda 80-90%; Copepoda 88-100%). The trench-slope and abyssal did not differ

  5. Trace Elements in Calcifying Marine Invertebrates Indicate Diverse Sensitivities to the Seawater Carbonate System

    NASA Astrophysics Data System (ADS)

    Doss, W. C.

    2015-12-01

    Surface ocean absorption of anthropogenic CO2 emissions resulting in ocean acidification may interfere with the ability of calcifying marine organisms to biomineralize, since the drop in pH is accompanied by reductions in CaCO3 saturation state. However, recent experiments show that net calcification rates of cultured benthic invertebrate taxa exhibit diverse responses to pCO2-induced changes in saturation state (Ries et al., 2009). Advancement of geochemical tools as biomineralization indicators will enable us to better understand these results and therefore help predict the impacts of ongoing and future decrease in seawater pH on marine organisms. Here we build upon previous work on these specimens by measuring the elemental composition of biogenic calcite and aragonite precipitated in four pCO2 treatments (400; 600; 900; and 2850 ppm). Element ratios (including Sr/Ca, Mg/Ca, Li/Ca, B/Ca, U/Ca, Ba/Ca, Cd/Ca, and Zn/Ca) were analyzed in 18 macro-invertebrate species representing seven phyla (crustacea, cnidaria, echinoidea, rhodophyta, chlorophyta, gastropoda, bivalvia, annelida), then compared to growth rate data and experimental seawater carbonate system parameters: [CO32-], [HCO3-], pH, saturation state, and DIC. Correlations between calcite or aragonite composition and seawater carbonate chemistry are highly taxa-specific, but do not resemble trends observed in growth rate for all species. Apparent carbonate system sensitivities vary widely by element, ranging from strongly correlated to no significant response. Interpretation of these results is guided by mounting evidence for the capacity of individual species to modulate pH and/or saturation state at the site of calcification in response to ambient seawater chemistry. Such biomineralization pathways and strategies in turn likely influence elemental fractionation during CaCO3 precipitation. Ries, J.B., A.L. Cohen, A.L., and D.C. McCorkle (2009), Marine calcifiers exhibit mixed responses to CO2-induced ocean

  6. Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery

    PubMed Central

    Kang, Se Won; Hwang, Hee-Ju; Park, So Young; Park, Eun Bi; Chung, Jong Min; Song, Dae Kwon; Kim, Changmu; Kim, Soonok; Lee, Jun Sang; Han, Yeon Soo; Park, Hong Seog; Lee, Yong Seok

    2016-01-01

    Background The freshwater mussel Cristaria plicata (Bivalvia: Eulamellibranchia: Unionidae), is an economically important species in molluscan aquaculture due to its use in pearl farming. The species have been listed as endangered in South Korea due to the loss of natural habitats caused by anthropogenic activities. The decreasing population and a lack of genomic information on the species is concerning for environmentalists and conservationists. In this study, we conducted a de novo transcriptome sequencing and annotation analysis of C. plicata using Illumina HiSeq 2500 next-generation sequencing (NGS) technology, the Trinity assembler, and bioinformatics databases to prepare a sustainable resource for the identification of candidate genes involved in immunity, defense, and reproduction. Results The C. plicata transcriptome analysis included a total of 286,152,584 raw reads and 281,322,837 clean reads. The de novo assembly identified a total of 453,931 contigs and 374,794 non-redundant unigenes with average lengths of 731.2 and 737.1 bp, respectively. Furthermore, 100% coverage of C. plicata mitochondrial genes within two unigenes supported the quality of the assembler. In total, 84,274 unigenes showed homology to entries in at least one database, and 23,246 unigenes were allocated to one or more Gene Ontology (GO) terms. The most prominent GO biological process, cellular component, and molecular function categories (level 2) were cellular process, membrane, and binding, respectively. A total of 4,776 unigenes were mapped to 123 biological pathways in the KEGG database. Based on the GO terms and KEGG annotation, the unigenes were suggested to be involved in immunity, stress responses, sex-determination, and reproduction. A total of 17,251 cDNA simple sequence repeats (cSSRs) were identified from 61,141 unigenes (size of >1 kb) with the most abundant being dinucleotide repeats. Conclusions This dataset represents the first transcriptome analysis of the endangered

  7. Protobranch bivalves.

    PubMed

    Zardus, John D

    2002-01-01

    The subclass Protobranchia comprises more than 600 species of bivalves that occur throughout the world ocean. Mostly deposit feeders in soft sediments, they are abundant in the deep sea. Apomorphies that unite them as a group include gill structure, hinge conformation, shell microstructure, larval development, foot morphology, respiratory pigments, trophic mode and digestion. They are relatively small and highly conserved in form, originating in the Cambrian era. They may represent an ancestral, derived or paraphylectic group of the Bivalvia. The protobranchs include two orders, the Nuculoida and Solemyoida, which previously were classified separately in the subclasses Paleotaxodonta and Cryptodonta, respectively. They are of ecological interest and have a unique functional morphology. They feed mostly under the surface of the sediment with highly modified labial palps, but the degree to which they are selective in diet remains difficult to determine. They are important bioturbators in many soft-sediment assemblages; their feeding and locomotion affects sediment structure and community development. Solemyoids are unusual in inhabiting reducing environments and hydrocarbon seeps and in deriving their nutrition from endosymbiotic chemosynthetic bacteria. A variety of species of protobranchs are found in oceanic trenches, near hydrothermal vents, and in submarine caves. Protobranchs produce a lecithotrophic larval stage, the pericalymma, making their development unique among bivalves. The pericalymma remains in the plankton for a short time and presumably has low dispersal ability. Recruitment may be intermittent. Growth is rapid in post-larvae but decreases with age, though rates may not necessarily be slow, especially in continental shelf species. Life spans are commonly 1 to 2 decades, but deep-sea representatives may grow more slowly and live longer. Bottom fish, seastars and gastropods are their major predators and a few parasites and commensals have been

  8. Determination of the variability of both hydrophilic and lipophilic toxins in endemic wild bivalves and carnivorous gastropods from the southern part of Chile.

    PubMed

    Zamorano, Ruben; Marín, Michelle; Cabrera, Fabiola; Figueroa, Diego; Contreras, Cristóbal; Barriga, Andrés; Lagos, Néstor; García, Carlos

    2013-01-01

    The aim of this study was to analyse and determine the composition of paralytic shellfish poisoning (PSP) toxins and lipophilic toxins in the Region of Aysén, Chile, in wild endemic mussels (Mytilus chilensis, Venus antiqua, Aulacomya ater, Choromytilus chorus, Tagelus dombeii and Gari solida) and in two endemic carnivorous molluscs species (Concholepas concholepas and Argobuccinum ranelliforme). PSP-toxin contents were determined by using HPLC with fluorescence detection, while lipophilic toxins were determined by using LC-MS/MS. Mean concentrations for the total of PSP toxins were in the range 55-2505 μg saxitoxin-equivalent/100 g. The two most contaminated samples for PSP toxicity were bivalve Gari solida and carnivorous Argobuccinum ranelliforme with 2505 ± 101 and 1850 ± 137 μg saxitoxin-equivalent/100 g, respectively (p < 0.05). The lipophilic toxins identified were okadaic acid, dinophysistoxin-1 (DTX-1), azaspiracid-1 (AZA-1), pectenotoxin-2 (PTX-2) and yessotoxins (YTX). All analysed molluscs contained lipophilic toxins at levels ranging from 56 ± 4.8 to 156.1 ± 8.2 μg of okadaic acid-equivalent/kg shellfish together with YTX at levels ranging from 1.0 ± 0.1 to 18 ± 0.9 μg of YTX-equivalent/kg shellfish and AZA at levels ranging from 3.6 ± 0.2 to 31 ± 2.1 μg of AZA-equivalent/kg shellfish. Furthermore, different bivalves and gastropods differ in their capacity of retention of lipophilic toxins, as shown by the determination of their respective lipophilic toxins levels. In all the evaluated species, the presence of lipophilic toxins associated with biotransformation in molluscs and carnivorous gastropods was not identified, in contrast to the identification of PSP toxins, where the profiles identified in the different species are directly related to biotransformation processes. Thus, this study provides evidence that the concentration of toxins in the food intake of the evaluated species (Bivalvia and Gastropoda class) determines the degree of

  9. Benthic Community Composition and Seabed Characteristics of a Chukchi Sea Pockmark

    NASA Astrophysics Data System (ADS)

    MacDonald, I. R.; Bluhm, B.; Iken, K.; Gagaev, S.; Robinson, S.

    2005-12-01

    densities of over 50 individuals per square meter. Preliminary analysis of the box core samples: Polychaetes (e.g. Chaetozone setose, Aricidea sp., Ophelina sp., Progoniada sp., Proclea graffi, Protula globifera), Foraminifera, Nemertini, Coronata (Cnidaria tubes), Sipunculida (Golfingia), Bivalvia, Anthozoa.

  10. A detailed taxonomy of Upper Cretaceous and lower Tertiary Crassatellidae in the Eastern United States; an example of the nature of extinction at the boundary

    USGS Publications Warehouse

    Wingard, G. Lynn

    1993-01-01

    Current theories on the causes of extinction at the CretaceousTertiary boundary have been based on previously published data; however, few workers have stopped to ask the question, 'How good is the basic data set?' To test the accuracy of the published record, a quantitative and qualitative analysis of the Crassatellidae (Mollusca, Bivalvia) of the Gulf and Mid-Atlantic Coastal Plains of the United States for the Upper Cretaceous and lower Tertiary was conducted. Thirty-eight species names and four generic names are used in publications for the Crassatellidae within the geographic and stratigraphic constraints of this analysis. Fourteen of the 38 species names are represented by statistically valid numbers of specimens and were tested by using canonical discriminant analysis. All 38 names, with the exception of 1 invalid name and 4 names for which no representative specimen could be located, were evaluated qualitatively. The results show that the published fossil record is highly inaccurate. Only 8 valid, recognizable species exist in the Crassatellidae within the limits of this study, 14 names are synonymized, and 11 names are represented by indeterminate molds or poorly preserved specimens. Three of the four genera are well founded; the fourth is based on the juvenile of another genus and therefore synonymized. This detailed taxonomic analysis of the Crassatellidae illustrates that the published fossil record is not reliable. Calculations of evolutionary and paleobiologic significance based on poorly defined, overly split fossil groups, such as the Crassatellidae, are biased in the following ways: Rates of evolution and extinction are higher, Faunal turnover at mass extinctions appears more catastrophic, Species diversity is high, Average species durations are shortened, and Geographic ranges are restricted. The data on the taxonomically standardized Crassatellidae show evolutionary rates one-quarter to one-half that of the published fossil record; faunal change

  11. Mollusks from late Mesozoic seep deposits, chiefly in California.

    PubMed

    Kaim, Andrzej; Jenkins, Robert G; Tanabe, Kazushige; Kiel, Steffen

    2014-01-01

    Twenty-nine mollusk species from Late Jurassic to Eocene hydrocarbon seep deposits from California (USA), Japan, New Zealand, and Barbados are described and illustrated. Twenty species belong to Gastropoda and nine to Bivalvia. Seven new species, three new genera, and one new family are introduced. The gastropod Hikidea gen. nov. includes smooth-shelled Cantrainea-like colloniins from Cretaceous hydrocarbon seeps and plesiosaur falls. Hikidea osoensis sp. nov. is the oldest species of this genus. Chilodonta? reticulata sp. nov. is a distinctive vetigastropod though its supraspecific position is unclear. Phanerolepida onoensis sp. nov. is the first species of this colloniin genus from a seep deposit. We describe two new genera of Hokkaidoconchidae: Abyssomelania gen. nov. and Ascheria gen. nov.; this family includes now four genera (including Hokkaidoconcha and Humptulipsia) and ranges from the Late Jurassic to the Eocene. Abyssomelania is characterized by a large, high-spired shell and unusual widely-spaced prosocline riblets (here called abyssomelaniid riblets). Abyssomelania is represented by two new species: A. cramptoni sp. nov. from the Late Cretaceous of New Zealand and A. campbellae sp. nov. from the Early Cretaceous of California. Ascheria gen. nov. is characterized by a large high-spired cerithiform shell, a subsutural constriction, and mostly reticulate ornament. Two nominate species are included: Ascheria gigantea (Kiel et al., 2008) and A. eucosmeta (Ascher, 1906), both of Early Cretaceous age. Two further species potentially belonging to Ascheria from the Eocene of Barbados are reported in open nomenclature and are re-illustrated and re-described for comparison. Humtulipsia nobuharai sp. nov. is described based on specimens from the Campanian-Maastrichtian Sada Limestone seep deposit in Japan. The new family Paskentanidae fam. nov. is introduced for the genera Paskentana and Atresius. The species of this family are characterized by thin-shelled, broad

  12. An integrated evaluation of the persistence and effects of 4-nonylphenol in an experimental littoral ecosystem

    SciTech Connect

    Liber, K.; Knuth, M.L.; Stay, F.S.

    1999-03-01

    A comprehensive littoral enclosure study was conducted to assess the persistence and distribution of 4-nonylphenol (NP) in a littoral ecosystem, and to evaluate the compound`s effects on resident aquatic biota. Enclosures with a mean ({+-} SD) surface area and volume of 31.4 {+-} 3.3 m{sup 2} and 32.0 {+-} 6.4 m{sup 3}, respectively, received eleven applications at 48-h intervals with one of four different rates of NP. This created a 20-d application period which was followed by a three to fourteen month observation period, depending on the endpoint measured. Mean {+-} SD NP concentrations in the water column measured 2 h after each application averaged 5 {+-} 4, 23 {+-} 11, 76 {+-} 21, and 243 {+-} 41 {micro}g/L at nominal treatments of 3, 30, 100, and 300 {micro}g/L, respectively. Persistence in the water column was relatively short, with a dissipation half-life estimated at {le} 1.2 d. Persistence of NP in sediment and on macrophytes was substantially longer, with estimated half-lives of 28 to 104 d and 8 to 13 d, respectively. Zooplankton was the most sensitive group of organisms evaluated, with significant reductions in population abundances of some copepod taxa observed at the 23 {+-} 11-{micro}g/L treatment. Fish survival was affected at 243 {+-} 41 {micro}g/L. The most sensitive benthic macroinvertebrate taxon, Pisidium (Bivalvia) was affected at 76 {+-} 21 {micro}g/L, but most taxa were only affected at the 243 {+-} 41-{micro}g/L treatment. None of the assessed populations were affected at the 5 {+-} 4-{micro}g/L treatment. Macrophytes and periphyton were not adversely affected by any of the treatments. Overall community composition, assessed at the family level or higher, was not affected at or below the 23 {+-} 11-{micro}g/L treatment, but did exhibit substantial changes at the 243 {+-} 41-{micro}g/L treatment. Some minor changes were observed at the 76 {+-} 21-{micro}g/L treatment. The maximum acceptable toxicant concentration in the water column, based

  13. Molecular detection and species identification of Alexandrium (Dinophyceae) causing harmful algal blooms along the Chilean coastline

    PubMed Central

    Jedlicki, Ana; Fernández, Gonzalo; Astorga, Marcela; Oyarzún, Pablo; Toro, Jorge E.; Navarro, Jorge M.; Martínez, Víctor

    2012-01-01

    Background and aims On the basis of morphological evidence, the species involved in South American Pacific coast harmful algal blooms (HABs) has been traditionally recognized as Alexandrium catenella (Dinophyceae). However, these observations have not been confirmed using evidence based on genomic sequence variability. Our principal objective was to accurately determine the species of Alexandrium involved in local HABs in order to implement a real-time polymerase chain reaction (PCR) assay for its rapid and easy detection on filter-feeding shellfish, such as mussels. Methodology For species-specific determination, the intergenic spacer 1 (ITS1), 5.8S subunit, ITS2 and the hypervariable genomic regions D1–D5 of the large ribosomal subunit of local strains were sequenced and compared with two data sets of other Alexandrium sequences. Species-specific primers were used to amplify signature sequences within the genomic DNA of the studied species by conventional and real-time PCR. Principal results Phylogenetic analysis determined that the Chilean strain falls into Group I of the tamarensis complex. Our results support the allocation of the Chilean Alexandrium species as a toxic Alexandrium tamarense rather than A. catenella, as currently defined. Once local species were determined to belong to Group I of the tamarensis complex, a highly sensitive and accurate real-time PCR procedure was developed to detect dinoflagellate presence in Mytilus spp. (Bivalvia) samples after being fed (challenged) in vitro with the Chilean Alexandrium strain. The results show that real-time PCR is useful to detect Alexandrium intake in filter-feeding molluscs. Conclusions It has been shown that the classification of local Alexandrium using morphological evidence is not very accurate. Molecular methods enabled the HAB dinoflagellate species of the Chilean coast to be assigned as A. tamarense rather than A. catenella. Real-time PCR analysis based on A. tamarense primers allowed the

  14. Organometallic complexes with biological molecules. XVIII. Alkyltin(IV) cephalexinate complexes: synthesis, solid state and solution phase investigations.

    PubMed

    Di Stefano, R; Scopelliti, M; Pellerito, C; Casella, G; Fiore, T; Stocco, G C; Vitturi, R; Colomba, M; Ronconi, L; Sciacca, I D; Pellerito, L

    2004-03-01

    Dialkyltin(IV) and trialkyltin(IV) complexes of the deacetoxycephalo-sporin-antibiotic cephalexin [7-(d-2-amino-2-phenylacetamido)-3-methyl-3-cephem-4-carboxylic acid] (Hceph) have been synthesized and investigated both in solid and solution phase. Analytical and thermogravimetric data supported the general formula Alk(2)SnOHceph(.)H(2)O and Alk(3)Snceph(.)H(2)O (Alk=Me, n-Bu), while structural information has been gained by FT-IR, (119)Sn Mössbauer and (1)H, (13)C, (119)Sn NMR data. In particular, IR results suggested polymeric structures both for Alk(2)SnOHceph(.)H(2)O and Alk(3)Snceph(.)H(2)O. Moreover, cephalexin appears to behave as monoanionic tridentate ligand coordinating the tin(IV) atom through ester-type carboxylate, as well as through beta-lactam carbonyl oxygen atoms and the amino nitrogen donor atoms in Alk(2)SnOHceph(.)H(2)O complexes. On the basis of (119)Sn Mössbauer spectroscopy it could be inferred that tin(IV) was hexacoordinated in such complexes in the solid state, showing skew trapezoidal configuration. As far as Alk(3)Sn(IV)ceph(.)H(2)O derivatives are concerned, cephalexin coordinated the Alk(3)Sn moiety through the carboxylate acting as a bridging bidentate monoanionic group. Again, (119)Sn Mössbauer spectroscopy led us to propose a trigonal configuration around the tin(IV) atom, with R(3)Sn equatorial disposition and bridging carboxylate oxygen atoms in the axial positions. The nature of the complexes in solution state was investigated by using (1)H, (13)C and (119)Sn NMR spectroscopy. Finally, the cytotoxic activity of organotin(IV) cephalexinate derivatives has been tested using two different chromosome-staining techniques Giemsa and CMA(3), towards spermatocyte chromosomes of the mussel Brachidontes pharaonis (Mollusca: Bivalvia). Colchicinized-like mitoses (c-mitoses) on slides obtained from animals exposed to organotin(IV) cephalexinate compounds, demonstrated the high mitotic spindle-inhibiting potentiality of these chemicals

  15. Biomineralisation in Mollusc shells

    NASA Astrophysics Data System (ADS)

    Dauphin, Y.; Cuif, J. P.; Salomé, M.; Williams, C. T.

    2009-04-01

    The main components of Mollusc shells are carbonate minerals: calcite and aragonite. ACC is present in larval stages. Calcite and aragonite can be secreted simultaneously by the mantle. Despite the small number of varieties, the arrangement of the mineral components is diverse, and dependant upon the taxonomy. They are also associated with organic components much more diverse, the diversity of which reflects the large taxonomic diversity. From TGA analyses, the organic content (water included) is high (>5% in some layers). The biomineralisation process is not a passive precipitation process, but is strongly controlled by the organism. The biological-genetic control is shown by the constancy of the arrangement of the layers, the mineralogy and the microstructure in a given species. Microstructural units (i.e. tablets, prisms etc.) have shapes that do not occur in non-biogenic counterparts. Nacreous tablets, for example, are flattened on their crystallographic c axis, which is normally the axis of maximum growth rate for non-biogenic aragonite. Morever, their inner structure is species-specific: the arrangements of nacreous tablets in Gastropoda - Cephalopoda, and in Bivalvia differ, and the inner arrangement of the nacreous tablets is different in ectocochlear and endocochlear Cephalopoda. The organic-mineral ratios also differ in the various layers of a shell. Differences in chemical composition also demonstrates the biological-genetic control: for example, aragonite has a low Sr content unknown in non-biogenic samples; two aragonitic layers in a shell have different Sr and Mg contents, S is higher in calcitic layers. Decalcification releases soluble (SOM) and insoluble (IOM) organic components. Insoluble components form the main part of the intercrystalline membranes, and contain proteins, polysaccharides and lipids. Soluble phases are present within the crystals and the intercrystalline membranes. These phases are composed of more or less glycosylated proteins

  16. Diplodon shells from Northwest Patagonia as continental proxy archives: Oxygen isotopic results and sclerochronological analyses

    NASA Astrophysics Data System (ADS)

    Soldati, A. L.; Beierlein, L.; Jacob, D. E.

    2009-04-01

    Freshwater mussels of the genus Diplodon (Bivalvia, Hyriidae) are the most abundant bivalve (today and in the past) in freshwater bodies at both sides of the South-Andean Cordillera. There are about 25 different Diplodon genera in Argentina and Chile that could be assigned almost completely to the species Diplodon chilensis (Gray, 1828) and two subspecies: D. ch. chilensis and D. ch. patagonicus; this latter species is found in Argentina between Mendoza (32˚ 52' S; 68˚ 51' W) and Chubut (45˚ 51' S; 67˚ 28' W), including the lakes and rivers of the target area, the Nahuel Huapi National Park (Castellanos, 1960). Despite their wide geographic distribution, Diplodon species have only rarely been used as climate archives in the southern hemisphere. Kaandorp et al. (2005) demonstrated for Diplodon longulus (Conrad 1874) collected from the Peruvian Amazonas that oxygen isotopic patterns in the shells could be used in order to reconstruct the precipitation regime and dry/wet seasonal of the monsoonal system in Amazonia. Although this study demonstrated the potential of Diplodon in climatological and ecological reconstructions in the southern hemisphere, as of yet, no systematic study of Diplodon as a multi-proxy archive has been undertaken for the Patagonian region. In this work we present sclerochronological analyses supported by ^18Oshell in recent mussel of Diplodon chilensis patagonicus (D'Orbigny, 1835) collected at Laguna El Trébol (42°S-71°W, Patagonia Argentina), one of the best studied water bodies in the region for paleoclimate analysis. Water temperature was measured every six hours for one year using a temperature sensor (Starmon mini®) placed at 5m depth in the lake, close to a mussel bank. Additionally, ^18Owater was measured monthly for the same time range.g^18Oshell values obtained by micro-milling at high spatial resolution in the growth increments of three Diplodon shells were compared to these records, and to air temperature and