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Sample records for fourier phase image

  1. Grid-Independent Compressive Imaging and Fourier Phase Retrieval

    ERIC Educational Resources Information Center

    Liao, Wenjing

    2013-01-01

    This dissertation is composed of two parts. In the first part techniques of band exclusion(BE) and local optimization(LO) are proposed to solve linear continuum inverse problems independently of the grid spacing. The second part is devoted to the Fourier phase retrieval problem. Many situations in optics, medical imaging and signal processing call…

  2. Grid-Based Fourier Transform Phase Contrast Imaging

    NASA Astrophysics Data System (ADS)

    Tahir, Sajjad

    Low contrast in x-ray attenuation imaging between different materials of low electron density is a limitation of traditional x-ray radiography. Phase contrast imaging offers the potential to improve the contrast between such materials, but due to the requirements on the spatial coherence of the x-ray beam, practical implementation of such systems with tabletop (i.e. non-synchrotron) sources has been limited. One recently developed phase imaging technique employs multiple fine-pitched gratings. However, the strict manufacturing tolerances and precise alignment requirements have limited the widespread adoption of grating-based techniques. In this work, we have investigated a technique recently demonstrated by Bennett et al. that utilizes a single grid of much coarser pitch. Our system consisted of a low power 100 microm spot Mo source, a CCD with 22 microm pixel pitch, and either a focused mammography linear grid or a stainless steel woven mesh. Phase is extracted from a single image by windowing and comparing data localized about harmonics of the grid in the Fourier domain. A Matlab code was written to perform the image processing. For the first time, the effects on the diffraction phase contrast and scattering amplitude images of varying grid types and periods, and of varying the window function type used to separate the harmonics, and the window widths, were investigated. Using the wire mesh, derivatives of the phase along two orthogonal directions were obtained and new methods investigated to form improved phase contrast images.

  3. Optical Fourier techniques for medical image processing and phase contrast imaging

    PubMed Central

    Yelleswarapu, Chandra S.; Kothapalli, Sri-Rajasekhar; Rao, D.V.G.L.N.

    2008-01-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy. PMID:18458764

  4. Optical Fourier techniques for medical image processing and phase contrast imaging.

    PubMed

    Yelleswarapu, Chandra S; Kothapalli, Sri-Rajasekhar; Rao, D V G L N

    2008-04-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy. PMID:18458764

  5. Fourier transform image processing techniques for grid-based phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Tahir, Sajjad; Bashir, Sajid; Petruccelli, Jonathan C.; MacDonald, C. A.

    2014-09-01

    A recently developed technique for phase imaging using table top sources is to use multiple fine-pitch gratings. However, the strict manufacturing tolerences and precise alignment required have limited the widespread adoption of grating-based techniques. In this work, we employ a technique recently demonstrated by Bennett et al.1 that ultilizes a single grid of much coarser pitch. Phase is extracted using Fourier processing on a single raw image taken using a focused mammography grid. The effects on the final image of varying grid, object, and detector distances, window widths, and of a variety of windowing functions, used to separate the harmonics, were investigated.

  6. Double image encryption based on random phase encoding in the fractional Fourier domain.

    PubMed

    Tao, Ran; Xin, Yi; Wang, Yue

    2007-11-26

    A novel image encryption method is proposed by utilizing random phase encoding in the fractional Fourier domain to encrypt two images into one encrypted image with stationary white distribution. By applying the correct keys which consist of the fractional orders, the random phase masks and the pixel scrambling operator, the two primary images can be recovered without cross-talk. The decryption process is robust against the loss of data. The phase-based image with a larger key space is more sensitive to keys and disturbances than the amplitude-based image. The pixel scrambling operation improves the quality of the decrypted image when noise perturbation occurs. The novel approach is verified by simulations. PMID:19550895

  7. Single-channel color image encryption using phase retrieve algorithm in fractional Fourier domain

    NASA Astrophysics Data System (ADS)

    Sui, Liansheng; Xin, Meiting; Tian, Ailing; Jin, Haiyan

    2013-12-01

    A single-channel color image encryption is proposed based on a phase retrieve algorithm and a two-coupled logistic map. Firstly, a gray scale image is constituted with three channels of the color image, and then permuted by a sequence of chaotic pairs generated by the two-coupled logistic map. Secondly, the permutation image is decomposed into three new components, where each component is encoded into a phase-only function in the fractional Fourier domain with a phase retrieve algorithm that is proposed based on the iterative fractional Fourier transform. Finally, an interim image is formed by the combination of these phase-only functions and encrypted into the final gray scale ciphertext with stationary white noise distribution by using chaotic diffusion, which has camouflage property to some extent. In the process of encryption and decryption, chaotic permutation and diffusion makes the resultant image nonlinear and disorder both in spatial domain and frequency domain, and the proposed phase iterative algorithm has faster convergent speed. Additionally, the encryption scheme enlarges the key space of the cryptosystem. Simulation results and security analysis verify the feasibility and effectiveness of this method.

  8. Color image encryption using iterative phase retrieve process in quaternion Fourier transform domain

    NASA Astrophysics Data System (ADS)

    Sui, Liansheng; Duan, Kuaikuai

    2015-02-01

    A single-channel color image encryption method is proposed based on iterative phase iterative process in quaternion Fourier transform domain. First, three components of the plain color image is confused respectively by using cat map. Second, the confused components are combined into a pure quaternion image, which is encode to the phase only function by using an iterative phase retrieval process. Finally, the phase only function is encrypted into the gray scale ciphertext with stationary white noise distribution based on the chaotic diffusion, which has camouflage property to some extent. The corresponding plain color image can be recovered from the ciphertext only with correct keys in the decryption process. Simulation results verify the feasibility and effectiveness of the proposed method.

  9. Adaptive anisotropic diffusion for noise reduction of phase images in Fourier domain Doppler optical coherence tomography.

    PubMed

    Xia, Shaoyan; Huang, Yong; Peng, Shizhao; Wu, Yanfeng; Tan, Xiaodi

    2016-08-01

    Phase image in Fourier domain Doppler optical coherence tomography offers additional flow information of investigated samples, which provides valuable evidence towards accurate medical diagnosis. High quality phase images are thus desirable. We propose a noise reduction method for phase images by combining a synthetic noise estimation criteria based on local noise estimator (LNE) and distance median value (DMV) with anisotropic diffusion model. By identifying noise and signal pixels accurately and diffusing them with different coefficients respectively and adaptive iteration steps, we demonstrated the effectiveness of our proposed method in both phantom and mouse artery images. Comparison with other methods such as filtering method (mean, median filtering), wavelet method, probabilistic method and partial differential equation based methods in terms of peak signal-to-noise ratio (PSNR), equivalent number of looks (ENL) and contrast-to-noise ratio (CNR) showed the advantages of our method in reserving image energy and removing noise. PMID:27570687

  10. Adaptive anisotropic diffusion for noise reduction of phase images in Fourier domain Doppler optical coherence tomography

    PubMed Central

    Xia, Shaoyan; Huang, Yong; Peng, Shizhao; Wu, Yanfeng; Tan, Xiaodi

    2016-01-01

    Phase image in Fourier domain Doppler optical coherence tomography offers additional flow information of investigated samples, which provides valuable evidence towards accurate medical diagnosis. High quality phase images are thus desirable. We propose a noise reduction method for phase images by combining a synthetic noise estimation criteria based on local noise estimator (LNE) and distance median value (DMV) with anisotropic diffusion model. By identifying noise and signal pixels accurately and diffusing them with different coefficients respectively and adaptive iteration steps, we demonstrated the effectiveness of our proposed method in both phantom and mouse artery images. Comparison with other methods such as filtering method (mean, median filtering), wavelet method, probabilistic method and partial differential equation based methods in terms of peak signal-to-noise ratio (PSNR), equivalent number of looks (ENL) and contrast-to-noise ratio (CNR) showed the advantages of our method in reserving image energy and removing noise. PMID:27570687

  11. [Simulated annealing based phase correction of interferogram in Fourier transform imaging spectrometer].

    PubMed

    Huang, Feng-zhen; Yuan, Yan; Zhang, Xiu-bao; Wang, Qian; Zhou, Zhi-liang

    2011-07-01

    Phase correction is one of the key technologies in the spectrum recovery of the Fourier transform imaging spectrometer. The present paper proposes a correction method based on simulated annealing algorithm to calculate phase error, which overcomes the disadvantage of the existing methods that can not correct the interferogram with noise. The method determines the phase optimum solution by controlling the phase decrease function, attaining objective function value by correcting interferogram data with random phase value generated in the phase range, and determining the objective function increment in accordance with the Metropolis criterion. The simulation result of the algorithm indicates that the optimized phase error is less than 0.5%, and both the error accuracy and stability of the spectrum-recovered relative spectrum is less than 1%, which is a great improvement compared with the existing algorithm. PMID:21942072

  12. Superresolution imaging method using phase-shifting digital lensless Fourier holography.

    PubMed

    Granero, Luis; Micó, Vicente; Zalevsky, Zeev; García, Javier

    2009-08-17

    A method which is useful for obtaining superresolved imaging in a digital lensless Fourier holographic configuration is presented. By placing a diffraction grating between the input object and the CCD recording device, additional high-order spatial-frequency content of the object spectrum is directed towards the CCD. Unlike other similar methods, the recovery of the different band pass images is performed by inserting a reference beam in on-axis mode and using phase-shifting method. This strategy provides advantages concerning the usage of the whole frequency plane as imaging plane. Thus, the method is no longer limited by the zero order term and the twin image. Finally, the whole process results in a synthetic aperture generation that expands up the system cutoff frequency and yields a superresolution effect. Experimental results validate our concepts for a resolution improvement factor of 3. PMID:19687979

  13. Imaging Fourier transform spectrometer

    SciTech Connect

    Bennett, C.L.

    1993-09-13

    This invention is comprised of an imaging Fourier transform spectrometer having a Fourier transform infrared spectrometer providing a series of images to a focal plane array camera. The focal plane array camera is clocked to a multiple of zero crossing occurrences as caused by a moving mirror of the Fourier transform infrared spectrometer and as detected by a laser detector such that the frame capture rate of the focal plane array camera corresponds to a multiple of the zero crossing rate of the Fourier transform infrared spectrometer. The images are transmitted to a computer for processing such that representations of the images as viewed in the light of an arbitrary spectral ``fingerprint`` pattern can be displayed on a monitor or otherwise stored and manipulated by the computer.

  14. Fourier plane imaging microscopy

    SciTech Connect

    Dominguez, Daniel Peralta, Luis Grave de; Alharbi, Nouf; Alhusain, Mdhaoui; Bernussi, Ayrton A.

    2014-09-14

    We show how the image of an unresolved photonic crystal can be reconstructed using a single Fourier plane (FP) image obtained with a second camera that was added to a traditional compound microscope. We discuss how Fourier plane imaging microscopy is an application of a remarkable property of the obtained FP images: they contain more information about the photonic crystals than the images recorded by the camera commonly placed at the real plane of the microscope. We argue that the experimental results support the hypothesis that surface waves, contributing to enhanced resolution abilities, were optically excited in the studied photonic crystals.

  15. Fourier phase in Fourier-domain optical coherence tomography

    PubMed Central

    Uttam, Shikhar; Liu, Yang

    2015-01-01

    Phase of an electromagnetic wave propagating through a sample-of-interest is well understood in the context of quantitative phase imaging in transmission-mode microscopy. In the past decade, Fourier-domain optical coherence tomography has been used to extend quantitative phase imaging to the reflection-mode. Unlike transmission-mode electromagnetic phase, however, the origin and characteristics of reflection-mode Fourier phase are poorly understood, especially in samples with a slowly varying refractive index. In this paper, the general theory of Fourier phase from first principles is presented, and it is shown that Fourier phase is a joint estimate of subresolution offset and mean spatial frequency of the coherence-gated sample refractive index. It is also shown that both spectral-domain phase microscopy and depth-resolved spatial-domain low-coherence quantitative phase microscopy are special cases of this general theory. Analytical expressions are provided for both, and simulations are presented to explain and support the theoretical results. These results are further used to show how Fourier phase allows the estimation of an axial mean spatial frequency profile of the sample, along with depth-resolved characterization of localized optical density change and sample heterogeneity. Finally, a Fourier phase-based explanation of Doppler optical coherence tomography is also provided. PMID:26831383

  16. Interferogram conditioning for improved Fourier analysis and application to X-ray phase imaging by grating interferometry.

    PubMed

    Montaux-Lambert, Antoine; Mercère, Pascal; Primot, Jérôme

    2015-11-01

    An interferogram conditioning procedure, for subsequent phase retrieval by Fourier demodulation, is presented here as a fast iterative approach aiming at fulfilling the classical boundary conditions imposed by Fourier transform techniques. Interference fringe patterns with typical edge discontinuities were simulated in order to reveal the edge artifacts that classically appear in traditional Fourier analysis, and were consecutively used to demonstrate the correction efficiency of the proposed conditioning technique. Optimization of the algorithm parameters is also presented and discussed. Finally, the procedure was applied to grating-based interferometric measurements performed in the hard X-ray regime. The proposed algorithm enables nearly edge-artifact-free retrieval of the phase derivatives. A similar enhancement of the retrieved absorption and fringe visibility images is also achieved. PMID:26561119

  17. Fourier plane image amplifier

    DOEpatents

    Hackel, L.A.; Hermann, M.R.; Dane, C.B.; Tiszauer, D.H.

    1995-12-12

    A solid state laser is frequency tripled to 0.3 {micro}m. A small portion of the laser is split off and generates a Stokes seed in a low power oscillator. The low power output passes through a mask with the appropriate hole pattern. Meanwhile, the bulk of the laser output is focused into a larger stimulated Brillouin scattering (SBS) amplifier. The low power beam is directed through the same cell in the opposite direction. The majority of the amplification takes place at the focus which is the fourier transform plane of the mask image. The small holes occupy large area at the focus and thus are preferentially amplified. The amplified output is now imaged onto the multichip module where the holes are drilled. Because of the fourier plane amplifier, only about 1/10th the power of a competitive system is needed. This concept allows less expensive masks to be used in the process and requires much less laser power. 1 fig.

  18. Fourier plane image amplifier

    DOEpatents

    Hackel, Lloyd A.; Hermann, Mark R.; Dane, C. Brent; Tiszauer, Detlev H.

    1995-01-01

    A solid state laser is frequency tripled to 0.3 .mu.m. A small portion of the laser is split off and generates a Stokes seed in a low power oscillator. The low power output passes through a mask with the appropriate hole pattern. Meanwhile, the bulk of the laser output is focused into a larger stimulated Brillouin scattering (SBS) amplifier. The low power beam is directed through the same cell in the opposite direction. The majority of the amplification takes place at the focus which is the fourier transform plane of the mask image. The small holes occupy large area at the focus and thus are preferentially amplified. The amplified output is now imaged onto the multichip module where the holes are drilled. Because of the fourier plane amplifier, only .about.1/10th the power of a competitive system is needed. This concept allows less expensive masks to be used in the process and requires much less laser power.

  19. Imaging Fourier Transform Spectrometer

    SciTech Connect

    Bennett, C.L.; Carter, M.R.; Fields, D.J.; Hernandez, J.

    1993-04-14

    The operating principles of an Imaging Fourier Transform Spectrometer (IFTS) are discussed. The advantages and disadvantages of such instruments with respect to alternative imaging spectrometers are discussed. The primary advantages of the IFTS are the capacity to acquire more than an order of magnitude more spectral channels than alternative systems with more than an order of magnitude greater etendue than for alternative systems. The primary disadvantage of IFTS, or FTS in general, is the sensitivity to temporal fluctuations, either random or periodic. Data from the IRIFTS (ir IFTS) prototype instrument, sensitive in the infrared, are presented having a spectral sensitivity of 0.01 absorbance units, a spectral resolution of 6 cm{sup {minus}1} over the range 0 to 7899 cm{sup {minus}1}, and a spatial resolution of 2.5 mr.

  20. A higher dimensional homodyne filter for phase sensitive partial Fourier reconstruction of magnetic resonance imaging.

    PubMed

    Paul, Joseph Suresh; Krishna Swamy Pillai, Uma

    2015-11-01

    The aim of this paper is to introduce procedural steps for extension of the 1D homodyne phase correction for k-space truncation in all gradient encoding directions. Compared to the existing method applied to 2D partial k-space, signal losses introduced by the phase correction filter are observed to be minimal for the modified approach. In addition, the modified form of phase correction retains the inherent property of homodyne filtering for elimination of incidental phase artifacts due to truncation. In parallel imaging, this new form of homodyne filtering is shown to be effective for minimizing the signal losses, when each of the channel k-spaces is truncated along both phase and frequency-encode directions. This is illustrated with 2D partial k-space for flow compensated multichannel susceptibility weighted imaging. Extension of this method to 3D partial k-space shows improved reconstruction of flow information in phase contrast magnetic resonance angiography with reduced blur and enhanced background suppression. PMID:26117692

  1. Electro-optic imaging Fourier transform spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin (Inventor); Znod, Hanying (Inventor)

    2009-01-01

    An Electro-Optic Imaging Fourier Transform Spectrometer (EOIFTS) for Hyperspectral Imaging is described. The EOIFTS includes an input polarizer, an output polarizer, and a plurality of birefringent phase elements. The relative orientations of the polarizers and birefringent phase elements can be changed mechanically or via a controller, using ferroelectric liquid crystals, to substantially measure the spectral Fourier components of light propagating through the EIOFTS. When achromatic switches are used as an integral part of the birefringent phase elements, the EIOFTS becomes suitable for broadband applications, with over 1 micron infrared bandwidth.

  2. Electro-optic Imaging Fourier Transform Spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin

    2005-01-01

    JPL is developing an innovative compact, low mass, Electro-Optic Imaging Fourier Transform Spectrometer (E-O IFTS) for hyperspectral imaging applications. The spectral region of this spectrometer will be 1 - 2.5 micron (1000-4000/cm) to allow high-resolution, high-speed hyperspectral imaging applications. One application will be the remote sensing of the measurement of a large number of different atmospheric gases simultaneously in the same airmass. Due to the use of a combination of birefringent phase retarders and multiple achromatic phase switches to achieve phase delay, this spectrometer is capable of hyperspectral measurements similar to that of the conventional Fourier transform spectrometer but without any moving parts. In this paper, the principle of operations, system architecture and recent experimental progress will be presented.

  3. Electro-optic Imaging Fourier Transform Spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin

    2005-01-01

    JPL is developing an innovative compact, low mass, Electro-Optic Imaging Fourier Transform Spectrometer (E-0IFTS) for hyperspectral imaging applications. The spectral region of this spectrometer will be 1 - 2.5 pm (1000 -4000 cm-') to allow high-resolution, high-speed hyperspectral imaging applications [l-51. One application will be theremote sensing of the measurement of a large number of different atmospheric gases simultaneously in the sameairmass. Due to the use of a combination of birefiingent phase retarders and multiple achromatic phase switches toachieve phase delay, this spectrometer is capable of hyperspectral measurements similar to that of the conventionalFourier transform spectrometer but without any moving parts. In this paper, the principle of operations, systemarchitecture and recent experimental progress will be presen.

  4. Fourier analysis of blood plasma laser images phase maps in the diagnosis of cancer in human organs

    NASA Astrophysics Data System (ADS)

    Ushenko, A. G.; Boychuk, T. M.; Mincer, O. P.; Kushnerick, L. Y.; Angelsky, P. O.; Bodnar, N. B.; Oleinichenko, B. P.

    2013-09-01

    The optical model of polycrystalline networks of histological sections of rectum wall is suggested. The results of investigating the interrelation between the values of statistical (statistical moments of the 1st-4th order) parameters are presented. They characterize the coordinate polarization distributions of Fourier transforms of laser images of blood plasma and oncological changes. The diagnostic criteria of rectum cancer are determined.

  5. Color image registration based on quaternion Fourier transformation

    NASA Astrophysics Data System (ADS)

    Wang, Qiang; Wang, Zhengzhi

    2012-05-01

    The traditional Fourier Mellin transform is applied to quaternion algebra in order to investigate quaternion Fourier transformation properties useful for color image registration in frequency domain. Combining with the quaternion phase correlation, we propose a method for color image registration based on the quaternion Fourier transform. The registration method, which processes color image in a holistic manner, is convenient to realign color images differing in translation, rotation, and scaling. Experimental results on different types of color images indicate that the proposed method not only obtains high accuracy in similarity transform in the image plane but also is computationally efficient.

  6. Imaging vibration of the cochlear partition of an excised guinea pig cochlea using phase-sensitive Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Choudhury, Niloy; Zeng, Yaguang; Fridberger, Anders; Chen, Fangyi; Zha, Dingjun; Nuttall, Alfred L.; Wang, Ruikang K.

    2011-03-01

    Studying the sound stimulated vibrations of various membranes that form the complex structure of the organ of Corti in the cochlea of the inner ear is essential for understanding how the travelling sound wave of the basilar membrane couples its energy to the organ structures. In this paper we report the feasibility of using phase-sensitive Fourier domain optical coherence tomography (FD-OCT) to image the vibration of various micro-structures of the cochlea at the same time. An excised cochlea of a guinea pig was stimulated using sounds at various frequencies and vibration image was obtained. When measuring the apex area, vibration signal from different turns, which have different best response frequencies are obtained in the same image. The method has the potential to measure the response from a much wider region of the cochlea than any other currently used method. The noise floor for vibration image for the system at 200 Hz was ~0.3nm.

  7. Rotational-translational fourier imaging system

    NASA Technical Reports Server (NTRS)

    Campbell, Jonathan W. (Inventor)

    2004-01-01

    This invention has the ability to create Fourier-based images with only two grid pairs. The two grid pairs are manipulated in a manner that allows (1) a first grid pair to provide multiple real components of the Fourier-based image and (2) a second grid pair to provide multiple imaginary components of the Fourier-based image. The novelty of this invention resides in the use of only two grid pairs to provide the same imaging information that has been traditionally collected with multiple grid pairs.

  8. Efficient single pixel imaging in Fourier space

    NASA Astrophysics Data System (ADS)

    Bian, Liheng; Suo, Jinli; Hu, Xuemei; Chen, Feng; Dai, Qionghai

    2016-08-01

    Single pixel imaging (SPI) is a novel technique capturing 2D images using a bucket detector with a high signal-to-noise ratio, wide spectrum range and low cost. Conventional SPI projects random illumination patterns to randomly and uniformly sample the entire scene’s information. Determined by Nyquist sampling theory, SPI needs either numerous projections or high computation cost to reconstruct the target scene, especially for high-resolution cases. To address this issue, we propose an efficient single pixel imaging technique (eSPI), which instead projects sinusoidal patterns for importance sampling of the target scene’s spatial spectrum in Fourier space. Specifically, utilizing the centrosymmetric conjugation and sparsity priors of natural images’ spatial spectra, eSPI sequentially projects two \\tfrac{π }{2}-phase-shifted sinusoidal patterns to obtain each Fourier coefficient in the most informative spatial frequency bands. eSPI can reduce requisite patterns by two orders of magnitude compared to conventional SPI, which helps a lot for fast and high-resolution SPI.

  9. Gas-phase plume from laser-irradiated fiberglass-reinforced polymers via imaging fourier transform spectroscopy.

    PubMed

    Acosta, Roberto I; Gross, Kevin C; Perram, Glen P; Johnson, Shane M; Dao, Ly; Medina, David F; Roybal, Robert; Black, Paul

    2014-01-01

    Emissive plumes from laser-irradiated fiberglass-reinforced polymers (FRP) were investigated using a mid-infrared imaging Fourier transform spectrometer, operating at fast framing rates (50 kHz imagery and 2.5 Hz hyperspectral imagery) with adequate spatial (0.81 mm(2) per pixel) and spectral resolution (2 cm(-1)). Fiberglass-reinforced polymer targets were irradiated with a 1064 nm continuous wave neodymium-doped yttrium aluminum garnet (Nd:YAG) laser for 60 s at 100 W in air. Strong emissions from H(2)O, CO, CO(2), and hydrocarbons were observed between 1800 and 5000 cm(-1). A single-layer radiative transfer model was developed for the spectral region from 2000 to 2400 cm(-1) to estimate spatial maps of temperature and column densities of CO and CO(2) from the hyperspectral imagery. The spectral model was used to compute the absorption cross sections of CO and CO(2) using spectral line parameters from the high-temperature extension of the HITRAN. The analysis of pre-combustion spectra yields effective temperatures rising from ambient to 1200 K and suddenly increasing to 1515 K upon combustion. The peak signal-to-noise ratio for a single spectrum exceeds 60:1, enabling temperature and column density determinations with low statistical error. For example, the spectral analysis for a single pixel within a single frame yields an effective temperature of 1019 ± 6 K, and CO and CO(2) column densities of 1.14 ± 0.05 and 1.11 ± 0.03 × 10(18) molec/cm(2), respectively. Systematic errors associated with the radiative transfer model dominate, yielding effective temperatures with uncertainties of >100 K and column densities to within a factor of 2-3. Hydrocarbon emission at 2800 to 3200 cm(-1) is well correlated with CO column density. PMID:25014838

  10. Double image encryption based on iterative fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Liu, Zhengjun; Liu, Shutian

    2007-07-01

    We present an image encryption algorithm to simultaneously encrypt two images into a single one as the amplitudes of fractional Fourier transform with different orders. From the encrypted image we can get two original images independently by fractional Fourier transforms with two different fractional orders. This algorithm can be independent of additional random phases as the encryption/decryption keys. Numerical results are given to analyze the capability of this proposed method. A possible extension to multi-image encryption with a fractional order multiplexing scheme has also been given.

  11. Fourier analysis of quadratic phase interferograms

    NASA Astrophysics Data System (ADS)

    Muñoz-Maciel, Jesús; Mora-González, Miguel; Casillas-Rodríguez, Francisco J.; Peña-Lecona, Francisco G.

    2015-06-01

    A phase demodulation method from a single interferogram with a quadratic phase term is developed. The fringe pattern being analysed may contain circular, elliptic or astigmatic fringes. The Fourier transform of such interferograms is seen to be also a sine or a cosine of a second order polynomial in both the real and imaginary parts. In this work we take a discrete Fourier transform of the fringe patterns and then we take separate inverse discrete transforms of the real and imaginary parts of the frequency spectrum. This results in two new interferograms corresponding to the sine and cosine of the quadratic term of the phase modulated by the sine and cosine of the linear term. The linear term of these interferograms may be recovered with similar procedures of fringe analysis from open fringe interferograms. Once the linear term is retrieved the quadratic phase of the interferogram being analysed can also be calculated. The present approach is also being investigated for interferograms with nearly circularly symmetry given that the phase contains some tilt. The described procedure of Fourier analysis from quadratic phase interferograms of nearly symmetric interferograms could be used instead of complex and time consuming algorithms for phase recovery from fringe patterns with closed fringes. Finally, the method is tested in simulated and real data.

  12. Livermore Imaging Fourier Transform Infrared Spectrometer (LIFTIRS)

    SciTech Connect

    Carter, M.R.; Bennett, C.L.; Fields, D.J.; Lee, F.D.

    1995-05-10

    Lawrence Livermore National Laboratory is currently operating a hyperspectral imager, the Livermore Imaging Fourier Transform Infrared Spectrometer (LIFTIRS). This instrument is capable of operating throughout the infrared spectrum from 3 to 12.5 {mu}m with controllable spectral resolution. In this presentation we report on it`s operating characteristics, current capabilities, data throughput and calibration issues.

  13. Proposal of snapshot line-imaging Fourier spectroscopy for smartphone

    NASA Astrophysics Data System (ADS)

    Kawashima, Natsumi; Sato, Shun; Ishida, Akane; Inohara, Daichi; Tanaka, Naotaka; Wada, Kenji; Nishiyama, Akira; Fujiwara, Masaru; Ishimaru, Ichiro

    2015-03-01

    We propose the extremely-compact-size line-imaging Fourier spectroscopy for smartphones. We realize the near common-path interferometer with strong robustness for mechanical vibrations by installing the transmission-type relative-inclined phase-shifter. The interferogram of an imaging line is formed as 2-dimensional fringe pattern on imaging sensor, such as CCD camera. In other words, the horizontal axis on an imaging sensor is assigned to phase-shift value. And the vertical axis is corresponds to image formation coordinate. Thus, by installing a relatively-inclined thin glass into imaging optics, such as smartphone, we will realize the line-imaging Fourier spectroscopy for healthcare sensor in daily-life environments.

  14. Fourier analysis: from cloaking to imaging

    NASA Astrophysics Data System (ADS)

    Wu, Kedi; Cheng, Qiluan; Wang, Guo Ping

    2016-04-01

    Regarding invisibility cloaks as an optical imaging system, we present a Fourier approach to analytically unify both Pendry cloaks and complementary media-based invisibility cloaks into one kind of cloak. By synthesizing different transfer functions, we can construct different devices to realize a series of interesting functions such as hiding objects (events), creating illusions, and performing perfect imaging. In this article, we give a brief review on recent works of applying Fourier approach to analysis invisibility cloaks and optical imaging through scattering layers. We show that, to construct devices to conceal an object, no constructive materials with extreme properties are required, making most, if not all, of the above functions realizable by using naturally occurring materials. As instances, we experimentally verify a method of directionally hiding distant objects and create illusions by using all-dielectric materials, and further demonstrate a non-invasive method of imaging objects completely hidden by scattering layers.

  15. Phase amplitude conformal symmetry in Fourier transforms

    NASA Astrophysics Data System (ADS)

    Kuwata, S.

    2015-04-01

    For the Fourier transform ℑ : L2(R) → L2(R) of a complex-valued even or odd function ψ, it is found that the amplitude invariance |ℑψ| = |ψ| leads to a phase invariance or inversion as arg(ℑψ) = ±argψ + θ (θ = constant). The converse holds unless arg ψ = constant. The condition |ψ| = |ℑψ| is required in dealing with, for example, the minimum uncertainty relation between position and momentum. Without the evenness or oddness of ψ, |ℑψ| = |ψ| does not necessarily imply arg(ℑψ) = ±argψ + θ, nor is the converse.

  16. Novel fringe scanning/Fourier transform method of synthetic imaging

    SciTech Connect

    Crawford, T.M.; Albano, R.K.

    1993-08-01

    We have developed a one-dimensional theory and a computer model for synthetically imaging scenes using a novel fringe scanning/Fourier transform technique. Our method probes a scene using two interfering beams of slightly different frequency. These beams form a moving fringe pattern which scans the scene and resonates with any spatial frequency components having the same spatial frequency as the scanning fringe pattern. A simple, non-imaging detector above the scene observes any scattered radiation from the scene falling onto it. If a resonance occurs between the scanning fringe pattern and the scene, then the scattered radiation will be modulated at the difference frequency between the two probing beams. By changing the spatial period of the fringe pattern and then measuring the amplitude and phase of the modulated radiation that is scattered from the scene, the Fourier amplitudes and phases of the different spatial frequency components making up the scene can be measured. A synthetic image of the scene being probed can be generated from this Fourier amplitude and phase data by taking the inverse Fourier transform of this information. This technique could be used to image objects using light, ultrasonic, or other electromagnetic or acoustic waves.

  17. Triple image encryption scheme in fractional Fourier transform domains

    NASA Astrophysics Data System (ADS)

    Liu, Zhengjun; Dai, Jingmin; Sun, Xiaogang; Liu, Shutian

    2009-02-01

    We proposed a triple image encryption scheme by use of fractional Fourier transform. In this algorithm, an original image is encoded in amplitude part and other two images are encoded into phase information. The key of encryption algorithm is obtained from the difference between the third image and the output phase of transform. In general case, random phase encoding technology is not required in the proposed algorithm. Moreover, all information of images is preserved in theory when image are decrypted with correct key. The optical implementation of the algorithm is presented with an electro-optical hybrid structure. Numerical simulations have demonstrated the efficiency and the security of this algorithm. Based on this scheme a multiple image algorithm is expanded and designed.

  18. Fourier removal of stripe artifacts in IRAS images

    NASA Technical Reports Server (NTRS)

    Van Buren, Dave

    1987-01-01

    By working in the Fourier plane, approximate removal of stripe artifacts in IRAS images can be effected. The image of interest is smoothed and subtracted from the original, giving the high-spatial-frequency part. This 'filtered' image is then clipped to remove point sources and then Fourier transformed. Subtracting the Fourier components contributing to the stripes in this image from the Fourier transform of the original and transforming back to the image plane yields substantial removal of the stripes.

  19. Optical image encryption based on multifractional Fourier transforms.

    PubMed

    Zhu, B; Liu, S; Ran, Q

    2000-08-15

    We propose a new image encryption algorithm based on a generalized fractional Fourier transform, to which we refer as a multifractional Fourier transform. We encrypt the input image simply by performing the multifractional Fourier transform with two keys. Numerical simulation results are given to verify the algorithm, and an optical implementation setup is also suggested. PMID:18066153

  20. Fast 3D shape measurement using Fourier transform profilometry without phase unwrapping

    NASA Astrophysics Data System (ADS)

    Song, Kechen; Hu, Shaopeng; Wen, Xin; Yan, Yunhui

    2016-09-01

    This paper presents a novel, simple, yet fast 3D shape measurement method using Fourier transform profilometry. Different from the conventional Fourier transform profilometry, this proposed method introduces the binocular stereo vision and employs two image pairs (i.e., original image pairs and fringe image pairs) to restructure 3D shape. In this proposed method, instead of phase unwrapping algorithm, a coarse disparity map is adopted as a constraint condition to realize phase matching using wrapped phase. Since the local phase matching and sub-pixel disparity refinement are proposed to obtain high measuring accuracy, high-quality phase is not required. The validity of the proposed method is verified by experiments.

  1. Compact snapshot birefringent imaging Fourier transform spectrometer

    NASA Astrophysics Data System (ADS)

    Kudenov, Michael W.; Dereniak, Eustace L.

    2010-08-01

    The design and implementation of a compact multiple-image Fourier transform spectrometer (FTS) is presented. Based on the multiple-image FTS originally developed by A. Hirai, the presented device offers significant advantages over his original implementation. Namely, its birefringent nature results in a common-path interferometer which makes the spectrometer insensitive to vibration. Furthermore, it enables the potential of making the instrument ultra-compact, thereby improving the portability of the sensor. The theory of the birefringent FTS is provided, followed by details of its specific embodiment. A laboratory proof of concept of the sensor, designed and developed at the Optical Detection Lab, is also presented. Spectral measurements of laboratory sources are provided, including measurements of light-emitting diodes and gas-discharge lamps. These spectra are verified against a calibrated Ocean Optics USB2000 spectrometer. Other data were collected outdoors, demonstrating the sensor's ability to resolve spectral signatures in standard outdoor lighting and environmental conditions.

  2. Fourier transform digital holographic adaptive optics imaging system

    PubMed Central

    Liu, Changgeng; Yu, Xiao; Kim, Myung K.

    2013-01-01

    A Fourier transform digital holographic adaptive optics imaging system and its basic principles are proposed. The CCD is put at the exact Fourier transform plane of the pupil of the eye lens. The spherical curvature introduced by the optics except the eye lens itself is eliminated. The CCD is also at image plane of the target. The point-spread function of the system is directly recorded, making it easier to determine the correct guide-star hologram. Also, the light signal will be stronger at the CCD, especially for phase-aberration sensing. Numerical propagation is avoided. The sensor aperture has nothing to do with the resolution and the possibility of using low coherence or incoherent illumination is opened. The system becomes more efficient and flexible. Although it is intended for ophthalmic use, it also shows potential application in microscopy. The robustness and feasibility of this compact system are demonstrated by simulations and experiments using scattering objects. PMID:23262541

  3. Single beam Fourier transform digital holographic quantitative phase microscopy

    SciTech Connect

    Anand, A. Chhaniwal, V. K.; Mahajan, S.; Trivedi, V.; Faridian, A.; Pedrini, G.; Osten, W.; Dubey, S. K.; Javidi, B.

    2014-03-10

    Quantitative phase contrast microscopy reveals thickness or height information of a biological or technical micro-object under investigation. The information obtained from this process provides a means to study their dynamics. Digital holographic (DH) microscopy is one of the most used, state of the art single-shot quantitative techniques for three dimensional imaging of living cells. Conventional off axis DH microscopy directly provides phase contrast images of the objects. However, this process requires two separate beams and their ratio adjustment for high contrast interference fringes. Also the use of two separate beams may make the system more vulnerable to vibrations. Single beam techniques can overcome these hurdles while remaining compact as well. Here, we describe the development of a single beam DH microscope providing whole field imaging of micro-objects. A hologram of the magnified object projected on to a diffuser co-located with a pinhole is recorded with the use of a commercially available diode laser and an arrayed sensor. A Fourier transform of the recorded hologram directly yields the complex amplitude at the image plane. The method proposed was investigated using various phase objects. It was also used to image the dynamics of human red blood cells in which sub-micrometer level thickness variation were measurable.

  4. Imaging Fourier transform spectrometry of chemical plumes

    NASA Astrophysics Data System (ADS)

    Bradley, Kenneth C.; Gross, Kevin C.; Perram, Glen P.

    2009-05-01

    A midwave infrared (MWIR) imaging Fourier transform spectrometer (FTS), the Telops FIRST-MWE (Field-portable Imaging Radiometric Spectrometer Technology - Midwave Extended) has been utilized for the standoff detection and characterization of chemical plumes. Successful collection and analysis of MWIR hyperspectral imagery of jet engine exhaust has allowed us to produce spatial profiles of both temperature and chemical constituent concentrations of exhaust plumes. Successful characterization of this high temperature combustion event has led to the collection and analysis of hyperspectral imagery of lower temperature emissions from industrial smokestacks. This paper presents MWIR data from remote collection of hyperspectral imagery of methyl salicilate (MeS), a chemical warfare agent simulant, during the Chemical Biological Distributed Early Warning System (CBDEWS) test at Dugway Proving Grounds, UT in 2008. The data did not contain spectral lines associated with emission of MeS. However, a few broad spectral features were present in the background-subtracted plume spectra. Further analysis will be required to assign these features, and determine the utility of MWIR hyperspectral imagery for analysis of chemical warfare agent plumes.

  5. Fourier Phase Domain Steganography: Phase Bin Encoding Via Interpolation

    NASA Astrophysics Data System (ADS)

    Rivas, Edward

    2007-04-01

    In recent years there has been an increased interest in audio steganography and watermarking. This is due primarily to two reasons. First, an acute need to improve our national security capabilities in light of terrorist and criminal activity has driven new ideas and experimentation. Secondly, the explosive proliferation of digital media has forced the music industry to rethink how they will protect their intellectual property. Various techniques have been implemented but the phase domain remains a fertile ground for improvement due to the relative robustness to many types of distortion and immunity to the Human Auditory System. A new method for embedding data in the phase domain of the Discrete Fourier Transform of an audio signal is proposed. Focus is given to robustness and low perceptibility, while maintaining a relatively high capacity rate of up to 172 bits/s.

  6. Optical imaging process based on two-dimensional Fourier transform for synthetic aperture imaging ladar

    NASA Astrophysics Data System (ADS)

    Sun, Zhiwei; Zhi, Ya'nan; Liu, Liren; Sun, Jianfeng; Zhou, Yu; Hou, Peipei

    2013-09-01

    The synthetic aperture imaging ladar (SAIL) systems typically generate large amounts of data difficult to compress with digital method. This paper presents an optical SAIL processor based on compensation of quadratic phase of echo in azimuth direction and two dimensional Fourier transform. The optical processor mainly consists of one phase-only liquid crystal spatial modulator(LCSLM) to load the phase data of target echo and one cylindrical lens to compensate the quadratic phase and one spherical lens to fulfill the task of two dimensional Fourier transform. We show the imaging processing result of practical target echo obtained by a synthetic aperture imaging ladar demonstrator. The optical processor is compact and lightweight and could provide inherent parallel and the speed-of-light computing capability, it has a promising application future especially in onboard and satellite borne SAIL systems.

  7. Adaptive chirp-Fourier transform for chirp estimation with applications in ISAR imaging of maneuvering targets

    NASA Astrophysics Data System (ADS)

    Xia, Xiang-Gen; Wang, Genyuan; Chen, Victor C.

    2001-03-01

    This paper first reviews some basic properties of the discrete chirp-Fourier transform and then present an adaptive chirp- Fourier transform, a generalization of the amplitude and phase estimation of sinusoids (APES) algorithm proposed by Li and Stoica for sinusoidal signals. We finally applied it to the ISAR imaging of maneuvering targets.

  8. Speckle size in optical Fourier domain imaging

    NASA Astrophysics Data System (ADS)

    Lamouche, G.; Vergnole, S.; Bisaillon, C.-E.; Dufour, M.; Maciejko, R.; Monchalin, J.-P.

    2007-06-01

    As in conventional time-domain optical coherence tomography (OCT), speckle is inherent to any Optical Fourier Domain Imaging (OFDI) of biological tissue. OFDI is also known as swept-source OCT (SS-OCT). The axial speckle size is mainly determined by the OCT resolution length and the transverse speckle size by the focusing optics illuminating the sample. There is also a contribution from the sample related to the number of scatterers contained within the probed volume. In the OFDI data processing, there is some liberty in selecting the range of wavelengths used and this allows variation in the OCT resolution length. Consequently the probed volume can be varied. By performing measurements on an optical phantom with a controlled density of discrete scatterers and by changing the probed volume with different range of wavelengths in the OFDI data processing, there is an obvious change in the axial speckle size, but we show that there is also a less obvious variation in the transverse speckle size. This work contributes to a better understanding of speckle in OCT.

  9. Multifunctional metasurface lens for imaging and Fourier transform

    NASA Astrophysics Data System (ADS)

    Wen, Dandan; Yue, Fuyong; Ardron, Marcus; Chen, Xianzhong

    2016-06-01

    A metasurface can manipulate light in a desirable manner by imparting local and space-variant abrupt phase change. Benefiting from such an unprecedented capability, the conventional concept of what constitutes an optical lens continues to evolve. Ultrathin optical metasurface lenses have been demonstrated based on various nanoantennas such as V-shape structures, nanorods and nanoslits. A single device that can integrate two different types of lenses and polarities is desirable for system integration and device miniaturization. We experimentally demonstrate such an ultrathin metasurface lens that can function either as a spherical lens or a cylindrical lens, depending on the helicity of the incident light. Helicity-controllable focal line and focal point in the real focal plane, as well as imaging and 1D/2D Fourier transforms, are observed on the same lens. Our work provides a unique tool for polarization imaging, image processing and particle trapping.

  10. Multifunctional metasurface lens for imaging and Fourier transform

    PubMed Central

    Wen, Dandan; Yue, Fuyong; Ardron, Marcus; Chen, Xianzhong

    2016-01-01

    A metasurface can manipulate light in a desirable manner by imparting local and space-variant abrupt phase change. Benefiting from such an unprecedented capability, the conventional concept of what constitutes an optical lens continues to evolve. Ultrathin optical metasurface lenses have been demonstrated based on various nanoantennas such as V-shape structures, nanorods and nanoslits. A single device that can integrate two different types of lenses and polarities is desirable for system integration and device miniaturization. We experimentally demonstrate such an ultrathin metasurface lens that can function either as a spherical lens or a cylindrical lens, depending on the helicity of the incident light. Helicity-controllable focal line and focal point in the real focal plane, as well as imaging and 1D/2D Fourier transforms, are observed on the same lens. Our work provides a unique tool for polarization imaging, image processing and particle trapping. PMID:27272601

  11. Multifunctional metasurface lens for imaging and Fourier transform.

    PubMed

    Wen, Dandan; Yue, Fuyong; Ardron, Marcus; Chen, Xianzhong

    2016-01-01

    A metasurface can manipulate light in a desirable manner by imparting local and space-variant abrupt phase change. Benefiting from such an unprecedented capability, the conventional concept of what constitutes an optical lens continues to evolve. Ultrathin optical metasurface lenses have been demonstrated based on various nanoantennas such as V-shape structures, nanorods and nanoslits. A single device that can integrate two different types of lenses and polarities is desirable for system integration and device miniaturization. We experimentally demonstrate such an ultrathin metasurface lens that can function either as a spherical lens or a cylindrical lens, depending on the helicity of the incident light. Helicity-controllable focal line and focal point in the real focal plane, as well as imaging and 1D/2D Fourier transforms, are observed on the same lens. Our work provides a unique tool for polarization imaging, image processing and particle trapping. PMID:27272601

  12. Color image encryption based on joint fractional Fourier transform correlator

    NASA Astrophysics Data System (ADS)

    Lu, Ding; Jin, Weimin

    2011-06-01

    In this paper, an optical color image encryption/decryption technology based on joint fractional Fourier transform correlator and double random phase encoding (DRPE) is developed. In this method, the joint fractional power spectrum of the image to be encrypted and the key codes is recorded as the encrypted data. Different from the case with classical DRPE, the same key code was used both in the encryption and decryption. The security of the system is enhanced because of the fractional order as a new added key. This method takes full advantage of the parallel processing features of the optical system, and could optically realize single-channel color image encryption. The experimental results indicate that the new method is feasible.

  13. Calibration of the Geostationary Imaging Fourier Transform Spectrometer (GIFTS)

    NASA Technical Reports Server (NTRS)

    Best, F. A.; Revercomb, H. E.; Bingham, G. E.; Knuteson, R. O.; Tobin, D. C.; LaPorte, D. D.; Smith, W. L.

    2001-01-01

    The NASA New Millennium Program's Geostationary Imaging Fourier Transform Spectrometer (GIFTS) requires highly accurate radiometric and spectral calibration in order to carry out its mission to provide water vapor, wind, temperature, and trace gas profiling from geostationary orbit. A calibration concept has been developed for the GIFTS Phase A instrument design. The in-flight calibration is performed using views of two on-board blackbody sources along with cold space. A radiometric calibration uncertainty analysis has been developed and used to show that the expected performance for GIFTS exceeds its top level requirement to measure brightness temperature to better than 1 K. For the Phase A GIFTS design, the spectral calibration is established by the highly stable diode laser used as the reference for interferogram sampling, and verified with comparisons to atmospheric calculations.

  14. Imaging Fourier Transform Spectroscopy from a Space Based Platform -- The Herschel/SPIRE Fourier Transform Spectrometer

    NASA Astrophysics Data System (ADS)

    Spencer, Locke Dean

    The Herschel Space Observatory (Herschel), a flagship mission of the European Space Agency (ESA), is comprised of three cryogenically cooled instruments commissioned to explore the far-infrared/submillimetre universe. Herschel's remote orbit at the second Lagrangian point (L2) of the Sun-Earth system, and its cryogenic payload, impose a need for thorough instrument characterization and rigorous testing as there will be no possibility for any servicing after launch. The Spectral and Photometric Imaging Receiver (SPIRE) is one of the instrument payloads aboard Herschel and consists of a three band imaging photometer and a two band imaging spectrometer. The imaging spectrometer on SPIRE consists of a Mach-Zehnder (MZ)-Fourier transform spectrometer (FTS) coupled with bolometric detector arrays to form an imaging FTS (IFTS). This thesis presents experiments conducted to verify the performance of an IFTS system from a space based platform, Le. the use of the SPIRE IFTS within the Herschel space observatory. Prior to launch, the SPIRE instrument has undergone a series of performance verification tests conducted at the Rutherford Appleton Laboratory (RAL) near Oxford, UK. Canada is involved in the SPIRE project through provision of instrument development hardware and software, mission flight software, and support personnel. Through this thesis project I have been stationed at RAL for a period spanning fifteen months to participate in the development, performance verification, and characterization of both the SPIRE FTS and photometer instruments. This thesis discusses Fourier transform spectroscopy and related FTS data processing (Chapter 2). Detailed discussions are included on the spectral phase related to the FTS beamsplitter (Chapter 3), the imaging aspects of the SPIRE IFTS instrument (Chapter 4), and the noise characteristics of the SPIRE bolometer detector arrays as measured using the SPIRE IFTS (Chapter 5). This thesis presents results from experiments performed

  15. Fourier transform imaging spectropolarimeter using simultaneous polarization modulation.

    PubMed

    Meng, Xin; Li, Jianxin; Liu, Defang; Zhu, Rihong

    2013-03-01

    We introduce a Fourier transform imaging spectropolarimeter composed of a simultaneous polarization modulator and a Fourier transform spectrometer without slit. The spectropolarimeter enables the generation of four sets of fringe patterns with different polarization states of light from an object point. Fourier transform of the fringe patterns provides four equations of Stokes parameters in various wavenumbers. And we can obtain the full-stokes vector from the equations. The most significant advantage of the method is that the four polarized fringe patterns are obtained simultaneously and separated without aliasing. Additionally, the advantages of the Fourier transform spectrometer are maintained, such as high radiative throughput. PMID:23455296

  16. Fourier transform infrared (FT-IR) spectroscopy and imaging of the nucleus to characterize DNA contributions in different phases of the cell cycle

    NASA Astrophysics Data System (ADS)

    Tiwari, Saumya; Zong, Xinying; Holton, Sarah E.; Prasanth, K. V.; Bhargava, Rohit

    2015-03-01

    Determination of neoplasia is largely dependent on the state of cell growth. Infrared (IR) spectroscopy has the potential to measure differences between normal and cancerous cells. When analyzing biopsy sections using IR spectroscopy, careful analyses become important since biochemical variations may be misinterpreted due to variations in cell cycle. Processes like DNA replication, transcription and translation to produce proteins are important in determining if the cells are actively dividing but no studies on this aspect using IR spectroscopy have been conducted on isolated cell nuclei. Nuclei hold critical information about the phase of cell and its capacity to divide, but IR spectra of nuclei are often confounded by cytoplasmic signals during data acquisition from intact cells and tissues. Therefore, we sought to separate nuclear signals from cytoplasmic signals and identify spectral differences that characterize different phases of the cell cycle. Both cells and isolated nuclei were analyzed to assess the effect of the cytoplasmic background and to identify spectral changes in nuclei in different phases of cell cycle. We observed that signals of DNA could be obtained when imaging nuclei isolated from cells in different phases of cell cycle, which is in contrast to the oft-cited case in cells wherein nuclear contributions are obscured. The differences across cell cycle phases were more pronounced in nucleic acid regions of the spectra, showing that the use of nuclear spectrum can provide additional information on cellular state. These results can aid in developing computational models that extract nuclear spectra from whole cells and tissues for more accurate assessment of biochemical variations.

  17. Fourier domain OCT imaging of American cockroach nervous system

    NASA Astrophysics Data System (ADS)

    Wyszkowska, Joanna; Gorczynska, Iwona; Ruminski, Daniel; Karnowski, Karol; Kowalczyk, Andrzej; Stankiewicz, Maria; Wojtkowski, Maciej

    2012-01-01

    In this pilot study we demonstrate results of structural Fourier domain OCT imaging of the nervous system of Periplaneta americana L. (American cockroach). The purpose of this research is to develop an OCT apparatus enabling structural imaging of insect neural system. Secondary purpose of the presented research is to develop methods of the sample preparation and handling during the OCT imaging experiments. We have performed imaging in the abdominal nerve cord excised from the American cockroach. For this purpose we have developed a Fourier domain / spectral OCT system operating at 820 nm wavelength range.

  18. Fourier Spectral Filter Array for Optimal Multispectral Imaging.

    PubMed

    Jia, Jie; Barnard, Kenneth J; Hirakawa, Keigo

    2016-04-01

    Limitations to existing multispectral imaging modalities include speed, cost, range, spatial resolution, and application-specific system designs that lack versatility of the hyperspectral imaging modalities. In this paper, we propose a novel general-purpose single-shot passive multispectral imaging modality. Central to this design is a new type of spectral filter array (SFA) based not on the notion of spatially multiplexing narrowband filters, but instead aimed at enabling single-shot Fourier transform spectroscopy. We refer to this new SFA pattern as Fourier SFA, and we prove that this design solves the problem of optimally sampling the hyperspectral image data. PMID:26849867

  19. Invariant quaternion radial harmonic Fourier moments for color image retrieval

    NASA Astrophysics Data System (ADS)

    Xiang-yang, Wang; Wei-yi, Li; Hong-ying, Yang; Pan-pan, Niu; Yong-wei, Li

    2015-03-01

    Moments and moment invariants have become a powerful tool in image processing owing to their image description capability and invariance property. But, conventional methods are mainly introduced to deal with the binary or gray-scale images, and the only approaches for color image always have poor color image description capability. Based on radial harmonic Fourier moments (RHFMs) and quaternion, we introduced the quaternion radial harmonic Fourier moments (QRHFMs) for representing color images in this paper, which can be seen as the generalization of RHFMs for gray-level images. It is shown that the QRHFMs can be obtained from the RHFMs of each color channel. We derived and analyzed the rotation, scaling, and translation (RST) invariant property of QRHFMs. We also discussed the problem of color image retrieval using invariant QRHFMs. Experimental results are provided to illustrate the efficiency of the proposed color image representation.

  20. Geosynchronous Imaging Fourier Transform Spectrometer (GIFTS): Imaging and Tracking Capability

    NASA Technical Reports Server (NTRS)

    Zhou, D. K.; Larar, A. M.; Liu, Xu; Reisse, R. A.; Smith, W. L.; Revercomb, H. E.; Bingham, G. E.; Zollinger, L. J.; Tansock, J. J.; Huppi, Ronald J.

    2007-01-01

    The geosynchronous-imaging Fourier transform spectrometer (GIFTS) engineering demonstration unit (EDU) is an imaging infrared spectrometer designed for atmospheric soundings. It measures the infrared spectrum in two spectral bands (14.6 to 8.8 microns, 6.0 to 4.4 microns) using two 128 128 detector arrays with a spectral resolution of 0.57/cm with a scan duration of approx. 11 seconds. From a geosynchronous orbit, the instrument will have the capability of taking successive measurements of such data to scan desired regions of the globe, from which atmospheric status, cloud parameters, wind field profiles, and other derived products can be retrieved. The GIFTS EDU provides a flexible and accurate testbed for the new challenges of the emerging hyperspectral era. The EDU ground-based measurement experiment, held in Logan, Utah during September 2006, demonstrated its extensive capabilities and potential for geosynchronous and other applications (e.g., Earth observing environmental measurements). This paper addresses the experiment objectives and overall performance of the sensor system with a focus on the GIFTS EDU imaging capability and proof of the GIFTS measurement concept.

  1. Fractional Fourier transform in temporal ghost imaging with classical light

    SciTech Connect

    Setaelae, Tero; Shirai, Tomohiro; Friberg, Ari T.

    2010-10-15

    We investigate temporal, second-order classical ghost imaging with long, incoherent, scalar plane-wave pulses. We prove that in rather general conditions, the intensity correlation function at the output of the setup is given by the fractional Fourier transform of the temporal object. In special cases, the correlation function is shown to reduce to the ordinary Fourier transform and the temporal image of the object. Effects influencing the visibility and the resolution are considered. This work extends certain known results on spatial ghost imaging into the time domain and could find applications in temporal tomography of pulses.

  2. Theoretical study of Fourier-transform acousto-optic imaging.

    PubMed

    Barjean, Kinia; Ramaz, François; Tualle, Jean-Michel

    2016-05-01

    We propose a full theoretical study of Fourier-transform acousto-optic imaging, which we recently introduced and experimentally assessed in [Opt. Lett.40, 705-708 (2015)OPLEDP0146-959210.1364/OL.40.000705] as an alternative to achieve axial resolution in acousto-optic imaging with a higher signal-to-noise ratio. PMID:27140883

  3. Electro-Optical Imaging Fourier-Transform Spectrometer

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin; Zhou, Hanying

    2006-01-01

    An electro-optical (E-O) imaging Fourier-transform spectrometer (IFTS), now under development, is a prototype of improved imaging spectrometers to be used for hyperspectral imaging, especially in the infrared spectral region. Unlike both imaging and non-imaging traditional Fourier-transform spectrometers, the E-O IFTS does not contain any moving parts. Elimination of the moving parts and the associated actuator mechanisms and supporting structures would increase reliability while enabling reductions in size and mass, relative to traditional Fourier-transform spectrometers that offer equivalent capabilities. Elimination of moving parts would also eliminate the vibrations caused by the motions of those parts. Figure 1 schematically depicts a traditional Fourier-transform spectrometer, wherein a critical time delay is varied by translating one the mirrors of a Michelson interferometer. The time-dependent optical output is a periodic representation of the input spectrum. Data characterizing the input spectrum are generated through fast-Fourier-transform (FFT) post-processing of the output in conjunction with the varying time delay.

  4. Phase averaging of image ensembles by using cepstral gradients

    SciTech Connect

    Swan, H.W.

    1983-11-01

    The direct Fourier phase averaging of an ensemble of randomly blurred images has long been thought to be too difficult a problem to undertake realistically owing to the necessity of proper phase unwrapping. It is shown that it is nevertheless possible to average the Fourier phase information in an image ensemble without calculating phases by using the technique of cepstral gradients.

  5. Asymmetric multiple-image encryption based on the cascaded fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Li, Yanbin; Zhang, Feng; Li, Yuanchao; Tao, Ran

    2015-09-01

    A multiple-image cryptosystem is proposed based on the cascaded fractional Fourier transform. During an encryption procedure, each of the original images is directly separated into two phase masks. A portion of the masks is subsequently modulated into an interim mask, which is encrypted into the ciphertext image; the others are used as the encryption keys. Using phase truncation in the fractional Fourier domain, one can use an asymmetric cryptosystem to produce a real-valued noise-like ciphertext, while a legal user can reconstruct all of the original images using a different group of phase masks. The encryption key is an indivisible part of the corresponding original image and is still useful during decryption. The proposed system has high resistance to various potential attacks, including the chosen-plaintext attack. Numerical simulations also demonstrate the security and feasibility of the proposed scheme.

  6. [Spatially modulated Fourier transform imaging spectrometer data compression research].

    PubMed

    Huang, Min; Xiangli, Bin; Yuan, Yan; Shen, Zhong; Lu, Qun-bo; Wang, Zhong-hou; Liu, Xue-bin

    2010-01-01

    Fourier transform imaging spectrometer is a new technic, and has been developed very fast in recent ten years. When it is used in satellite, because of the limit by the data transmission, the authors need to compress the original data obtained by the Fourier transform imaging spectrometer, then, the data can be transmitted, and can be incepted on the earth and decompressed. Then the authors can do data process to get spectrum data which can be used by user. Data compression technic used in Fourier transform imaging spectrometer is a new technic, and few papers introduce it at home and abroad. In this paper the authors will give a data compression method, which has been used in EDIS, and achieved a good result. PMID:20302132

  7. Medical Image Provessing using Transient Fourier Holography in Bacteriorhodopsin Films

    NASA Astrophysics Data System (ADS)

    Kothapalli, Sri-Rajasekhar; Wu, Pengfei; Yelleswarapu, Chandra; Devulapalli, Rao

    2005-03-01

    A real-time optical Fourier image processing system is demonstrated for early detection of microcalcifications in screen film as well as digital mammograms. The principle is based on recording and reconstructing the transient photoisomerizative grating formed in the bR film. At first Fourier hologram is recorded by spatially overlapping the Fourier transformed object beam with the reference beam in the bR film. Then the object beam is blocked and the reference beam performs the reconstruction of the recorded Fourier hologram. The optimum of diffraction efficiency occurs when object beam intensity is matched to the reference beam intensity. We exploit this technique to process mammograms in real-time for identification of microcalcifications buried in the soft tissue for early detection of breast cancer. A novel feature of the technique is the ability to transient display of selected spatial frequencies in the reconstructing process which enables the radiologists to study the features of interest in time scale.

  8. Comparative analysis of imaging configurations and objectives for Fourier microscopy.

    PubMed

    Kurvits, Jonathan A; Jiang, Mingming; Zia, Rashid

    2015-11-01

    Fourier microscopy is becoming an increasingly important tool for the analysis of optical nanostructures and quantum emitters. However, achieving quantitative Fourier space measurements requires a thorough understanding of the impact of aberrations introduced by optical microscopes that have been optimized for conventional real-space imaging. Here we present a detailed framework for analyzing the performance of microscope objectives for several common Fourier imaging configurations. To this end, we model objectives from Nikon, Olympus, and Zeiss using parameters that were inferred from patent literature and confirmed, where possible, by physical disassembly. We then examine the aberrations most relevant to Fourier microscopy, including the alignment tolerances of apodization factors for different objective classes, the effect of magnification on the modulation transfer function, and vignetting-induced reductions of the effective numerical aperture for wide-field measurements. Based on this analysis, we identify an optimal objective class and imaging configuration for Fourier microscopy. In addition, the Zemax files for the objectives and setups used in this analysis have been made publicly available as a resource for future studies. PMID:26560923

  9. Construction of a Fourier-transform phase-modulation fluorometer

    NASA Astrophysics Data System (ADS)

    Shibata, Hironobu; Iwata, Tetsuo

    2005-12-01

    We have constructed a Fourier-transform phase-modulation fluorometer (FT-PMF) by which a fluorescence decay waveform can be obtained. In the FT-PMF, the modulation frequency of the excitation light source is swept continuously from a direct current (dc) to a high frequency f max with a time duration T. The resultant fluorescence signal waveform is Fourier-transformed to obtain its amplitude and phase spectra. The ratio of the amplitude spectrum and the difference of the phase spectrum over those of the reference spectra that are obtained from a non-fluorescent material are calculated, respectively, and the pair of both spectral data is inverse-Fourier-transformed again to obtain the fluorescence decay waveform. The light source used was an ultraviolet light emitting- diode (UV LED) whose typical operating condition was f max = 100 MHz and T = 10 μs. To demonstrate the performance of the FT-PMF, we carried out (1) measurement of a fluorescent decay waveform of YAG materials packed in a white LED, and (2) determination of fluorescence lifetime of 10 ppm quinine sulfate in 0.1N H IISO 4.

  10. Construction of a Fourier-transform phase-modulation fluorometer

    NASA Astrophysics Data System (ADS)

    Iwata, Tetsuo; Shibata, Hironobu; Araki, Tsutomu

    2005-11-01

    We have constructed a Fourier-transform phase-modulation fluorometer (FT-PMF) by which a fluorescence decay waveform can be obtained. In the FT-PMF, the modulation frequency of the excitation light source is swept continuously from a direct current (dc) to a high frequency fmax with a time duration T. The resultant fluorescence signal waveform is Fourier transformed to obtain its amplitude and phase spectra. The ratio of the amplitude spectrum and the difference of the phase spectrum over those of the reference spectra from an excitation waveform are calculated, respectively, and the pair of both spectral data is inverse-Fourier-transformed again to obtain the fluorescence decay waveform. The light source used was an ultraviolet light-emitting diode (UV LED) whose operating condition was fmax = 50-120 MHz and T = 10 µs. To demonstrate the performance of the FT-PMF, we carried out (1) the measurement of a fluorescent decay waveform of YAG materials enclosed in a white LED and (2) determinations of fluorescence lifetimes of 10 ppm quinine sulfate in 0.1 N H2SO4 and 10 ppm rhodamine 6G in ethanol.

  11. Fourier Power Spectrum Characteristics of Face Photographs: Attractiveness Perception Depends on Low-Level Image Properties

    PubMed Central

    Langner, Oliver; Wiese, Holger; Redies, Christoph

    2015-01-01

    We investigated whether low-level processed image properties that are shared by natural scenes and artworks – but not veridical face photographs – affect the perception of facial attractiveness and age. Specifically, we considered the slope of the radially averaged Fourier power spectrum in a log-log plot. This slope is a measure of the distribution of special frequency power in an image. Images of natural scenes and artworks possess – compared to face images – a relatively shallow slope (i.e., increased high spatial frequency power). Since aesthetic perception might be based on the efficient processing of images with natural scene statistics, we assumed that the perception of facial attractiveness might also be affected by these properties. We calculated Fourier slope and other beauty-associated measurements in face images and correlated them with ratings of attractiveness and age of the depicted persons (Study 1). We found that Fourier slope – in contrast to the other tested image properties – did not predict attractiveness ratings when we controlled for age. In Study 2A, we overlaid face images with random-phase patterns with different statistics. Patterns with a slope similar to those in natural scenes and artworks resulted in lower attractiveness and higher age ratings. In Studies 2B and 2C, we directly manipulated the Fourier slope of face images and found that images with shallower slopes were rated as more attractive. Additionally, attractiveness of unaltered faces was affected by the Fourier slope of a random-phase background (Study 3). Faces in front of backgrounds with statistics similar to natural scenes and faces were rated as more attractive. We conclude that facial attractiveness ratings are affected by specific image properties. An explanation might be the efficient coding hypothesis. PMID:25835539

  12. [Research on spatially modulated Fourier transform imaging spectrometer data processing method].

    PubMed

    Huang, Min; Xiangli, Bin; Lü, Qun-Bo; Zhou, Jin-Song; Jing, Juan-Juan; Cui, Yan

    2010-03-01

    Fourier transform imaging spectrometer is a new technic, and has been developed very rapidly in nearly ten years. The data catched by Fourier transform imaging spectrometer is indirect data, can not be used by user, and need to be processed by various approaches, including data pretreatment, apodization, phase correction, FFT, and spectral radicalization calibration. No paper so far has been found roundly to introduce this method. In the present paper, the author will give an effective method to process the interfering data to spectral data, and with this method we can obtain good result. PMID:20496726

  13. Visible Imaging Fourier Transform Spectrometer: Design and Calibration

    SciTech Connect

    Wishnow, E H; Wurtz, R; Blais-Ouellette, S; Cook, K H; Carr, D; Lewis, I; Grandmont, F; Stubbs, C W

    2002-09-19

    We present details of the design, operation and calibration of an astronomical visible-band imaging Fourier transform spectrometer (IFTS). This type of instrument produces a spectrum for every pixel in the field of view where the spectral resolution is flexible. The instrument is a dual-input/dual-output Michelson interferometer coupled to the 3.5 meter telescope at the Apache Point Observatory. Imaging performance and interferograms and spectra from calibration sources and standard stars are discussed.

  14. Errors of fourier chemical-shift imaging and their corrections

    NASA Astrophysics Data System (ADS)

    Wang, Zhiyue; Bolinger, Lizann; Subramanian, V. Harihara; Leigh, John S.

    From a finite and discrete Fourier transform point of view, we discuss the sources of localization errors in Fourier chemical-shift imaging, and demonstrate them explicitly by computer simulations for simple cases. Errors arise from intravoxel dephasing and the intravoxel asymmetry. The spectral leakage due to intravoxel dephasing is roughly 6-8% from one voxel to one of its nearest neighbors. Neighbors further away are influenced less significantly. The loss of localization due to intravoxel asymmetry effect is also severe. Fortunately, these errors can be corrected under certain conditions. The method for correcting the errors by postprocessing the data is described.

  15. Fourier transform infrared phase shift cavity ring down spectrometer

    NASA Astrophysics Data System (ADS)

    Schundler, Elizabeth; Mansur, David J.; Vaillancourt, Robert; Benedict-Gill, Ryan; Newbry, Scott P.; Engel, James R.; Rentz Dupuis, Julia

    2013-05-01

    We report on our current status towards the development of a prototype Fourier transform infrared phase shift cavity ring down spectrometer (FTIR-PS-CRDS) system under a U.S. EPA SBIR contract. Our system uses the inherent wavelength-dependent modulation imposed by the FTIR on a broadband thermal source for the phase shift measurement. This spectrally-dependent phase shift is proportional to the spectrally-dependent ring down time, which is proportional to the losses of the cavity including those due to molecular absorption. Our approach is a broadband and spectral range enhancement to conventional CRDS which is typically done in the near IR at a single wavelength; at the same time our approach is a sensitivity enhancement to traditional FTIR owing to the long effective path of the resonant cavity. In this paper we present a summary of the theory including performance projections and the design details of the prototype FTIR-PS-CRDS system.

  16. A study of geometric phase topology using Fourier transform method

    NASA Astrophysics Data System (ADS)

    Samlan, C. T.; Naik, Dinesh N.; Viswanathan, Nirmal K.

    2016-07-01

    Topological aspect of the geometric phase (GP) due to pure polarization projection is studied using the 2D Fourier transform (2D-FT) method. Projection of orthogonal polarization state results in a phase singularity in the 2D parameter space of ellipticity and orientation of polarization ellipse. Projection of its surrounding states results in an accumulation of GP in different amount that form a spiral structure. A half wave plate–quarter wave plate combination is used to generate different polarization states which are projected using a polarizer. The accumulated phase for each orientation of the wave plate is extracted from 2D-FT of the interferogram, obtained by interfering it with a reference beam in a Mach–Zehnder like interferometer.

  17. Binary-Phase Fourier Gratings for Nonuniform Array Generation

    NASA Technical Reports Server (NTRS)

    Keys, Andrew S.; Crow, Robert W.; Ashley, Paul R.

    2003-01-01

    We describe a design method for a binary-phase Fourier grating that generates an array of spots with nonuniform, user-defined intensities symmetric about the zeroth order. Like the Dammann fanout grating approach, the binary-phase Fourier grating uses only two phase levels in its grating surface profile to generate the final spot array. Unlike the Dammann fanout grating approach, this method allows for the generation of nonuniform, user-defined intensities within the final fanout pattern. Restrictions governing the specification and realization of the array's individual spot intensities are discussed. Design methods used to realize the grating employ both simulated annealing and nonlinear optimization approaches to locate optimal solutions to the grating design problem. The end-use application driving this development operates in the near- to mid-infrared spectrum - allowing for higher resolution in grating specification and fabrication with respect to wavelength than may be available in visible spectrum applications. Fabrication of a grating generating a user-defined nine spot pattern is accomplished in GaAs for the near-infrared. Characterization of the grating is provided through the measurement of individual spot intensities, array uniformity, and overall efficiency. Final measurements are compared to calculated values with a discussion of the results.

  18. 360-degrees profilometry using strip-light projection coupled to Fourier phase-demodulation.

    PubMed

    Servin, Manuel; Padilla, Moises; Garnica, Guillermo

    2016-01-11

    360 degrees (360°) digitalization of three dimensional (3D) solids using a projected light-strip is a well-established technique in academic and commercial profilometers. These profilometers project a light-strip over the digitizing solid while the solid is rotated a full revolution or 360-degrees. Then, a computer program typically extracts the centroid of this light-strip, and by triangulation one obtains the shape of the solid. Here instead of using intensity-based light-strip centroid estimation, we propose to use Fourier phase-demodulation for 360° solid digitalization. The advantage of Fourier demodulation over strip-centroid estimation is that the accuracy of phase-demodulation linearly-increases with the fringe density, while in strip-light the centroid-estimation errors are independent. Here we proposed first to construct a carrier-frequency fringe-pattern by closely adding the individual light-strip images recorded while the solid is being rotated. Next, this high-density fringe-pattern is phase-demodulated using the standard Fourier technique. To test the feasibility of this Fourier demodulation approach, we have digitized two solids with increasing topographic complexity: a Rubik's cube and a plastic model of a human-skull. According to our results, phase demodulation based on the Fourier technique is less noisy than triangulation based on centroid light-strip estimation. Moreover, Fourier demodulation also provides the amplitude of the analytic signal which is a valuable information for the visualization of surface details. PMID:26832248

  19. Birefringent Fourier transform imaging spectrometer with a rotating retroreflector.

    PubMed

    Bai, Caixun; Li, Jianxin; Shen, Yan; Zhou, Jianqiang

    2016-08-01

    A birefringent Fourier transform imaging spectrometer with a new lateral shearing interferometer is presented. The interferometer includes a Wollaston prism and a retroreflector. It splits an incident light beam into two shearing parallel parts to obtain interference fringe patterns of an imaging target, which is well established as an aid in reducing problems associated with optical alignment and manufacturing precision. Continuously rotating the retroreflector enables the spectrometer to acquire two-dimensional spectral images without spatial scanning. This technology, with a high work efficiency and low complexity, is inherently compact and robust. The effectiveness of the proposed method is demonstrated by the experimental results. PMID:27472640

  20. Astronomical imaging Fourier spectroscopy at far-infrared wavelengths

    NASA Astrophysics Data System (ADS)

    Naylor, David A.; Gom, Brad G.; van der Wiel, Matthijs H. D.; Makiwa, Gibion

    2013-11-01

    The principles and practice of astronomical imaging Fourier transform spectroscopy (FTS) at far-infrared wavelengths are described. The Mach–Zehnder (MZ) interferometer design has been widely adopted for current and future imaging FTS instruments; we compare this design with two other common interferometer formats. Examples of three instruments based on the MZ design are presented. The techniques for retrieving astrophysical parameters from the measured spectra are discussed using calibration data obtained with the Herschel–SPIRE instrument. The paper concludes with an example of imaging spectroscopy obtained with the SPIRE FTS instrument.

  1. A phase space model of Fourier ptychographic microscopy

    PubMed Central

    Horstmeyer, Roarke; Yang, Changhuei

    2014-01-01

    A new computational imaging technique, termed Fourier ptychographic microscopy (FPM), uses a sequence of low-resolution images captured under varied illumination to iteratively converge upon a high-resolution complex sample estimate. Here, we propose a mathematical model of FPM that explicitly connects its operation to conventional ptychography, a common procedure applied to electron and X-ray diffractive imaging. Our mathematical framework demonstrates that under ideal illumination conditions, conventional ptychography and FPM both produce datasets that are mathematically linked by a linear transformation. We hope this finding encourages the future cross-pollination of ideas between two otherwise unconnected experimental imaging procedures. In addition, the coherence state of the illumination source used by each imaging platform is critical to successful operation, yet currently not well understood. We apply our mathematical framework to demonstrate that partial coherence uniquely alters both conventional ptychography’s and FPM’s captured data, but up to a certain threshold can still lead to accurate resolution-enhanced imaging through appropriate computational post-processing. We verify this theoretical finding through simulation and experiment. PMID:24514995

  2. Experimental results from an airborne static Fourier transform imaging spectrometer.

    PubMed

    Ferrec, Yann; Taboury, Jean; Sauer, Hervé; Chavel, Pierre; Fournet, Pierre; Coudrain, Christophe; Deschamps, Joël; Primot, Jérôme

    2011-10-20

    A high étendue static Fourier transform spectral imager has been developed for airborne use. This imaging spectrometer, based on a Michelson interferometer with rooftop mirrors, is compact and robust and benefits from a high collection efficiency. Experimental airborne images were acquired in the visible domain. The processing chain to convert raw images to hyperspectral data is described, and airborne spectral images are presented. These experimental results show that the spectral resolution is close to the one expected, but also that the signal to noise ratio is limited by various phenomena (jitter, elevation fluctuations, and one parasitic image). We discuss the origin of those limitations and suggest solutions to circumvent them. PMID:22015418

  3. Gradient-based image recovery methods from incomplete Fourier measurements.

    PubMed

    Patel, Vishal M; Maleh, Ray; Gilbert, Anna C; Chellappa, Rama

    2012-01-01

    A major problem in imaging applications such as magnetic resonance imaging and synthetic aperture radar is the task of trying to reconstruct an image with the smallest possible set of Fourier samples, every single one of which has a potential time and/or power cost. The theory of compressive sensing (CS) points to ways of exploiting inherent sparsity in such images in order to achieve accurate recovery using sub-Nyquist sampling schemes. Traditional CS approaches to this problem consist of solving total-variation (TV) minimization programs with Fourier measurement constraints or other variations thereof. This paper takes a different approach. Since the horizontal and vertical differences of a medical image are each more sparse or compressible than the corresponding TV image, CS methods will be more successful in recovering these differences individually. We develop an algorithm called GradientRec that uses a CS algorithm to recover the horizontal and vertical gradients and then estimates the original image from these gradients. We present two methods of solving the latter inverse problem, i.e., one based on least-square optimization and the other based on a generalized Poisson solver. After a thorough derivation of our complete algorithm, we present the results of various experiments that compare the effectiveness of the proposed method against other leading methods. PMID:21690011

  4. Phase Spectroscopy Of Surface Electromagnetic Waves Using Fourier Spectrometer

    NASA Astrophysics Data System (ADS)

    Kuzik, L. A.; Yakovlev, V. A.; Zhizhin, G. N.; Chesters, M. A.; Parker, S. F.

    1989-12-01

    The surface electromagnetic wave (SEWS spectroscopy has shown high sensitivity to the state of the surface . The measurements of SEW attenuation andphase retardation during SEW propagation on the sample allow to obtain Ihe optical constants of surface layer or oxide on the metal. Up to now phase spectroscopy used laser sources of radiation, thus the interference measurements were done only in the spectral region where laser lines are available. To apply phase spectroscopy or SEW to the surface analysis widely it is necessary to expand the spectral region where they are studing. High sensitivity or modern Fourier transform spectrometers allows to detect SEW excited by broadband source. We have used Fourier transform spectrometers FTS-20V (Digilab) and Michelson-110 (BOMEM) with liquid nitrogen cooled detectors (Hg-Cd-Te). On silver surface SEW were excited using aperture coupling. The experiment is shown on the fig.1 . IR radiation from interferometer was focused on the gap between the sample 3 surface and the screen 1 placed at the distance of the order of 100 μm. In such a way on the gap propagating along a metal SEW and bulk radiation above the metal are excited.

  5. Optimal color image restoration: Wiener filter and quaternion Fourier transform

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.; Agaian, Sos S.

    2015-03-01

    In this paper, we consider the model of quaternion signal degradation when the signal is convoluted and an additive noise is added. The classical model of such a model leads to the solution of the optimal Wiener filter, where the optimality with respect to the mean square error. The characteristic of this filter can be found in the frequency domain by using the Fourier transform. For quaternion signals, the inverse problem is complicated by the fact that the quaternion arithmetic is not commutative. The quaternion Fourier transform does not map the convolution to the operation of multiplication. In this paper, we analyze the linear model of the signal and image degradation with an additive independent noise and the optimal filtration of the signal and images in the frequency domain and in the quaternion space.

  6. Incubator embedded cell culture imaging system (EmSight) based on Fourier ptychographic microscopy.

    PubMed

    Kim, Jinho; Henley, Beverley M; Kim, Charlene H; Lester, Henry A; Yang, Changhuei

    2016-08-01

    Multi-day tracking of cells in culture systems can provide valuable information in bioscience experiments. We report the development of a cell culture imaging system, named EmSight, which incorporates multiple compact Fourier ptychographic microscopes with a standard multiwell imaging plate. The system is housed in an incubator and presently incorporates six microscopes. By using the same low magnification objective lenses as the objective and the tube lens, the EmSight is configured as a 1:1 imaging system that, providing large field-of-view (FOV) imaging onto a low-cost CMOS imaging sensor. The EmSight improves the image resolution by capturing a series of images of the sample at varying illumination angles; the instrument reconstructs a higher-resolution image by using the iterative Fourier ptychographic algorithm. In addition to providing high-resolution brightfield and phase imaging, the EmSight is also capable of fluorescence imaging at the native resolution of the objectives. We characterized the system using a phase Siemens star target, and show four-fold improved coherent resolution (synthetic NA of 0.42) and a depth of field of 0.2 mm. To conduct live, long-term dopaminergic neuron imaging, we cultured ventral midbrain from mice driving eGFP from the tyrosine hydroxylase promoter. The EmSight system tracks movements of dopaminergic neurons over a 21 day period. PMID:27570701

  7. Incubator embedded cell culture imaging system (EmSight) based on Fourier ptychographic microscopy

    PubMed Central

    Kim, Jinho; Henley, Beverley M.; Kim, Charlene H.; Lester, Henry A.; Yang, Changhuei

    2016-01-01

    Multi-day tracking of cells in culture systems can provide valuable information in bioscience experiments. We report the development of a cell culture imaging system, named EmSight, which incorporates multiple compact Fourier ptychographic microscopes with a standard multiwell imaging plate. The system is housed in an incubator and presently incorporates six microscopes. By using the same low magnification objective lenses as the objective and the tube lens, the EmSight is configured as a 1:1 imaging system that, providing large field-of-view (FOV) imaging onto a low-cost CMOS imaging sensor. The EmSight improves the image resolution by capturing a series of images of the sample at varying illumination angles; the instrument reconstructs a higher-resolution image by using the iterative Fourier ptychographic algorithm. In addition to providing high-resolution brightfield and phase imaging, the EmSight is also capable of fluorescence imaging at the native resolution of the objectives. We characterized the system using a phase Siemens star target, and show four-fold improved coherent resolution (synthetic NA of 0.42) and a depth of field of 0.2 mm. To conduct live, long-term dopaminergic neuron imaging, we cultured ventral midbrain from mice driving eGFP from the tyrosine hydroxylase promoter. The EmSight system tracks movements of dopaminergic neurons over a 21 day period. PMID:27570701

  8. Denoising and deblurring of Fourier transform infrared spectroscopic imaging data

    NASA Astrophysics Data System (ADS)

    Nguyen, Tan H.; Reddy, Rohith K.; Walsh, Michael J.; Schulmerich, Matthew; Popescu, Gabriel; Do, Minh N.; Bhargava, Rohit

    2012-03-01

    Fourier transform infrared (FT-IR) spectroscopic imaging is a powerful tool to obtain chemical information from images of heterogeneous, chemically diverse samples. Significant advances in instrumentation and data processing in the recent past have led to improved instrument design and relatively widespread use of FT-IR imaging, in a variety of systems ranging from biomedical tissue to polymer composites. Various techniques for improving signal to noise ratio (SNR), data collection time and spatial resolution have been proposed previously. In this paper we present an integrated framework that addresses all these factors comprehensively. We utilize the low-rank nature of the data and model the instrument point spread function to denoise data, and then simultaneously deblurr and estimate unknown information from images, using a Bayesian variational approach. We show that more spatial detail and improved image quality can be obtained using the proposed framework. The proposed technique is validated through experiments on a standard USAF target and on prostate tissue specimens.

  9. Wideband electromagnetic scattering program. Fourier-based radar imaging techniques

    NASA Astrophysics Data System (ADS)

    Chan, B. L.; Young, J. D.; Rudduck, R. C.

    1993-09-01

    This report describes the implementation of Fourier based radar imaging algorithms in a computer program. In particular, the algorithms are derived for wide bandwidth and for specific geometries. These geometries are often measured by radar cross section measurement systems such as compact ranges and near field linear synthetic aperture radar systems. The limitations of different implementations of the algorithms are presented. Imaging results from radar measurements are also presented for an F-4 fighter aircraft, an M35 truck (1/16 scale model), and a forest.

  10. High-resolution lensless Fourier transform holography for microstructure imaging

    NASA Astrophysics Data System (ADS)

    Zhao, Jie; Wang, Dayong; Wang, Huaying; Xie, Jianjun

    2007-12-01

    Digital holography combines the advantages of the optical holography and the computers. It can implement an all-digital processing and has the quasi real-time property. With lensless Fourier transform recording architecture, the limited bandwidth of CCD camera can be utilized sufficiently, and the sampling theorem is satisfied easily. Therefore, high-resolution can be achieved. So it is preferred in the microstructure imaging. In the paper, based on the Fresnel diffraction theory and the off-axis lensless Fourier transform recording architecture, the experimental optimization and correspondingly the digital reconstruction was investigated. Also, the lateral resolution of the reconstructed image was analyzed and improved by the proposed techniques. When the USAF test target was imaged without any pre-magnification, the lateral resolution of 3.1μm was achieved, which matched the theoretical prediction very well. The key points to achieve high resolution image are to use the smaller object and to arrange the distance between the object and the CCD plane as short as possible. Meanwhile, properly overlapping the reconstructed image with the DC term was helpful to improve the resolution. The noise in the reconstructed image could be reduced greatly by choosing the optical elements precisely and adjusting the beam path finely. The experimental results demonstrated that it is possible for the digital holographic microscopy to produce the high resolution image without the objective pre-magnification. The results also showed that, with a high quality hologram, the special image processing during the reconstruction may be unnecessary to obtain a high quality image.

  11. The use of Fourier reverse transforms in crystallographic phase refinement

    SciTech Connect

    Ringrose, S.

    1997-10-08

    Often a crystallographer obtains an electron density map which shows only part of the structure. In such cases, the phasing of the trial model is poor enough that the electron density map may show peaks in some of the atomic positions, but other atomic positions are not visible. There may also be extraneous peaks present which are not due to atomic positions. A method for determination of crystal structures that have resisted solution through normal crystallographic methods has been developed. PHASER is a series of FORTRAN programs which aids in the structure solution of poorly phased electron density maps by refining the crystallographic phases. It facilitates the refinement of such poorly phased electron density maps for difficult structures which might otherwise not be solvable. The trial model, which serves as the starting point for the phase refinement, may be acquired by several routes such as direct methods or Patterson methods. Modifications are made to the reverse transform process based on several assumptions. First, the starting electron density map is modified based on the fact that physically the electron density map must be non-negative at all points. In practice a small positive cutoff is used. A reverse Fourier transform is computed based on the modified electron density map. Secondly, the authors assume that a better electron density map will result by using the observed magnitudes of the structure factors combined with the phases calculated in the reverse transform. After convergence has been reached, more atomic positions and less extraneous peaks are observed in the refined electron density map. The starting model need not be very large to achieve success with PHASER; successful phase refinement has been achieved with a starting model that consists of only 5% of the total scattering power of the full molecule. The second part of the thesis discusses three crystal structure determinations.

  12. Closed fringe demodulation using phase decomposition by Fourier basis functions.

    PubMed

    Kulkarni, Rishikesh; Rastogi, Pramod

    2016-06-01

    We report a new technique for the demodulation of a closed fringe pattern by representing the phase as a weighted linear combination of a certain number of linearly independent Fourier basis functions in a given row/column at a time. A state space model is developed with the weights of the basis functions as the elements of the state vector. The iterative extended Kalman filter is effectively utilized for the robust estimation of the weights. A coarse estimate of the fringe density based on the fringe frequency map is used to determine the initial row/column to start with and subsequently the optimal number of basis functions. The performance of the proposed method is evaluated with several noisy fringe patterns. Experimental results are also reported to support the practical applicability of the proposed method. PMID:27409439

  13. Integrated optics in an electrically scanned imaging Fourier transform spectrometer

    NASA Technical Reports Server (NTRS)

    Breckinridge, James B. (Inventor); Ocallaghan, Fred G. (Inventor)

    1982-01-01

    An efficient, lightweight and stable, Fourier transform spectrometer was developed. The mechanical slide mechanism needed to create a path difference was eliminated by the use of retro-reflecting mirrors in a monolithic interferometer assembly in which the mirrors are not at 90 degrees to the propagation vector of the radiation, but rather at a small angle. The resulting plane wave fronts create a double-sided inteferogram of the source irradiance distribution which is detected by a charge-coupled device image sensor array. The position of each CCD pixel in the array is an indication of the path difference between the two retro-reflecting mirrors in the monolithic optical structure. The Fourier transform of the signals generated by the image sensor provide the spectral irradiance distribution of the source. For imaging, the interferometer assembly scans the source of irradiation by moving the entire instrument, such as would occur if it was fixedly mounted to a moving platform, i.e., a spacecraft. During scanning, the entrace slot to the monolithic optical structure sends different pixels to corresponding interferograms detected by adjacent columns of pixels of the image sensor.

  14. Imaging Fourier transform spectrometer (IFTS): parametric sensitivity analysis

    NASA Astrophysics Data System (ADS)

    Keller, Robert A.; Lomheim, Terrence S.

    2005-06-01

    Imaging Fourier transform spectrometers (IFTS) allow for very high spectral resolution hyperspectral imaging while using moderate size 2D focal plane arrays in a staring mode. This is not the case for slit scanning dispersive imaging spectrometers where spectral sampling is related to the focal plane pixel count along the spectral dimension of the 2D focal plane used in such an instrument. This can become a major issue in the longwave infrared (LWIR) where the operability and yield of highly sensitivity arrays (i.e.HgCdTe) of large dimension are generally poor. However using an IFTS introduces its own unique set of issues and tradeoffs. In this paper we develop simplified equations for describing the sensitivity of an IFTS, including the effects of data windowing. These equations provide useful insights into the optical, focal plane and operational design trade space that must be considered when examining IFTS concepts aimed at a specific sensitivity and spectral resolution application. The approach is illustrated by computing the LWIR noise-equivalent spectral radiance (NESR) corresponding to the NASA Geosynchronous Imaging Fourier Transform Spectrometer (GIFTS) concept assuming a proven and reasonable noise-equivalent irradiance (NEI) capability for the focal plane.

  15. Imaging the sun in hard x rays using Fourier telescopes

    NASA Technical Reports Server (NTRS)

    Campbell, J. W.

    1993-01-01

    For several years, solar flares have been observed with a variety of instruments confirming that tremendous amounts of energy are locally stored in the solar magnetic field and then rapidly released during the life of the flare. In concert with observations, theorists have attempted to describe the means by which these energetic events occur and evolve. Two competing theories have emerged and have stood the test of time. One theory describes the flare in terms of nonthermal, electron beam injection into a thick target while the other uses a thermal approach. Both theories provide results which are reasonably consistent with current observations; but to date, none have been able to provide conclusive evidence as to the validity of either model. Imaging on short time scales (1 s) and/or small size scales (1 arc s) should give definitive answers to these questions. In order to test whether a realistic telescope can indeed discriminate between models, we construct model sources based upon the thermal and the nonthermal models and calculate the emission as a function of time and energy in the range from 10 to 100 keV. In addition, we construct model telescopes representing both the spatial modulation collimator (SMC) and the rotating modulation collimator (RMC) techniques of observation using random photon counting statistics. With these two types of telescopes we numerically simulate the instrument response to the above two model flares to see if there are distinct x-ray signatures which may be discernable. We find that theoretical descriptions of the primary models of solar flares do indeed predict different hard x-ray signatures for 1 sec time scales and at 1-5 arc sec spatial resolution. However, these distinguishing signatures can best be observed early in the impulsive phase and from a position perpendicular to the plane of the loop. Furthermore, we find that Fourier telescopes with reasonable and currently attainable design characteristics can image these

  16. Fourier transform infrared phase shift cavity ring down spectrometer

    NASA Astrophysics Data System (ADS)

    Schundler, Elizabeth; Mansur, David J.; Vaillancourt, Robert; Benedict-Gill, Ryan; Newbry, Scott P.; Engel, James R.; Dupuis, Julia Rentz

    2014-05-01

    OPTRA has developed a Fourier transform infrared phase shift cavity ring down spectrometer (FTIR-PS-CRDS) system under a U.S. EPA SBIR contract. This system uses the inherent wavelength-dependent modulation imposed by the FTIR on a broadband thermal source for the phase shift measurement. This spectrally-dependent phase shift is proportional to the spectrally-dependent ring down time. The spectral dependence of both of these values is introduced by the losses of the cavity including those due to the molecular absorption of the sample. OPTRA's approach allows broadband detection of chemicals across the feature-rich fingerprint region of the long-wave infrared. This represents a broadband and spectral range enhancement to conventional CRDS which is typically done at a single wavelength in the near IR; at the same time the approach is a sensitivity enhancement to traditional FTIR, owing to the long effective path of the resonant cavity. In previous papers1,2, OPTRA has presented a breadboard system aimed at demonstrating the feasibility of the approach and a prototype design implementing performance enhancements based on the results of breadboard testing. In this final paper in the series, we will present test results illustrating the realized performance of the fully assembled and integrated breadboard, thereby demonstrating the utility of the approach.

  17. Imaging Organ of Corti Vibration Using Fourier-Domain OCT

    NASA Astrophysics Data System (ADS)

    Choudhury, Niloy; Chen, Fangyi; Fridberger, Anders; Zha, Dingjun; Jacques, Steven L.; Wang, Ruikang K.; Nuttall, Alfred L.

    2011-11-01

    Measuring the sound stimulated vibration from various structures in the organ of Corti is important in understanding how the small vibrations are amplified and detected. In this study we examine the feasibility of using phase-sensitive Fourier domain optical coherence tomography (PSFD-OCT) to measure vibration of the cellular structures of the organ of Corti. PSFD-OCT is a low coherence interferrometry system where the interferrogram is detected as a function of wavelength. The phase of the Fourier transformation of the detected spectra contains path deference (between the sample arm and the reference arm) information of the interferometer. In PSFD-OCT this phase is measured as a function of time and thus any time dependent change in the path difference between the sample arm and the reference arm can be detected. In the experiment, we used an in vitro preparation of the guinea pig cochlea and made a surgical opening at the apical end to access the organ of Corti. By applying tones with different frequencies via the intact middle ear, we recorded the structural vibration inside the organ of Corti. Vibration amplitude and phase of different substructures were mapped on a cross-section view of the organ of Corti. Although the measurements were made at the apical turn of the cochlea, it will be possible to make vibration measurement from various turns of the cochlea. The noise floor of the system was 0.3 nm, calibrated using a piezo stack as a calibrator.

  18. Geometric phase analysis based on the windowed Fourier transform for the deformation field measurement

    NASA Astrophysics Data System (ADS)

    Dai, Xianglu; Xie, Huimin; Wang, Qinghua

    2014-06-01

    The geometric phase analysis (GPA), an important image-based deformation measurement method, has been used at both micro- and nano-scale. However, when a deformed image has apparent distortion, non-ignorable error in the obtained deformation field could occur by using this method. In this paper, the geometric phase analysis based on the windowed Fourier transform (WFT) is proposed to solve the above-mentioned issue, defined as the WFT-GPA method. In WFT-GPA, instead of the Fourier transform (FT), the WFT is utilized to extract the phase field block by block, and therefore more accurate local phase information can be acquired. The simulation tests, which include detailed discussion of influence factors for measurement accuracy such as window size and image noise, are conducted with digital deformed grids. The results verify that the WFT-GPA method not only keeps all advantages of traditional GPA method, but also owns a better accuracy for deformation measurement. Finally, the WFT-GPA method is applied to measure the machining distortion incurred in soft ultraviolet nanoimprint lithography (UV-NIL) process. The successful measurement shows the feasibility of this method and offers a full-field way for characterizing the replication quality of UV-NIL process.

  19. Instrument concept of the imaging Fourier transform spectrometer GLORIA

    NASA Astrophysics Data System (ADS)

    Friedl-Vallon, F.; Gulde, T.; Hase, F.; Kleinert, A.; Kulessa, T.; Maucher, G.; Neubert, T.; Olschewski, F.; Piesch, C.; Preusse, P.; Rongen, H.; Sartorius, C.; Schneider, H.; Schönfeld, A.; Tan, V.; Bayer, N.; Blank, J.; Dapp, R.; Ebersoldt, A.; Fischer, H.; Graf, F.; Guggenmoser, T.; Höpfner, M.; Kaufmann, M.; Kretschmer, E.; Latzko, T.; Nordmeyer, H.; Oelhaf, H.; Orphal, J.; Riese, M.; Schardt, G.; Schillings, J.; Sha, M. K.; Suminska-Ebersoldt, O.; Ungermann, J.

    2014-03-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) is an imaging limb emission sounder operating in the thermal infrared region. It is designed to provide measurements of the Upper Troposphere/Lower Stratosphere with high spatial and high spectral resolution. The instrument consists of an imaging Fourier transform spectrometer integrated in a gimbal. The assembly can be mounted in the belly pod of the German high altitude and long range research aircraft HALO and in instrument bays of the Russian M55 Geophysica. Measurements are made predominantly in two distinct modes: the chemistry mode emphasises chemical analysis with high spectral resolution, the dynamics mode focuses on dynamical processes of the atmosphere with very high spatial resolution. In addition the instrument allows tomographic analyses of air volumes. The first measurement campaigns have shown compliance with key performance and operational requirements.

  20. Instrument concept of the imaging Fourier transform spectrometer GLORIA

    NASA Astrophysics Data System (ADS)

    Friedl-Vallon, F.; Gulde, T.; Hase, F.; Kleinert, A.; Kulessa, T.; Maucher, G.; Neubert, T.; Olschewski, F.; Piesch, C.; Preusse, P.; Rongen, H.; Sartorius, C.; Schneider, H.; Schönfeld, A.; Tan, V.; Bayer, N.; Blank, J.; Dapp, R.; Ebersoldt, A.; Fischer, H.; Graf, F.; Guggenmoser, T.; Höpfner, M.; Kaufmann, M.; Kretschmer, E.; Latzko, T.; Nordmeyer, H.; Oelhaf, H.; Orphal, J.; Riese, M.; Schardt, G.; Schillings, J.; Sha, M. K.; Suminska-Ebersoldt, O.; Ungermann, J.

    2014-10-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) is an imaging limb emission sounder operating in the thermal infrared region. It is designed to provide measurements of the upper troposphere/lower stratosphere with high spatial and high spectral resolution. The instrument consists of an imaging Fourier transform spectrometer integrated into a gimbal. The assembly can be mounted in the belly pod of the German High Altitude and Long Range research aircraft (HALO) and in instrument bays of the Russian M55 Geophysica. Measurements are made in two distinct modes: the chemistry mode emphasises chemical analysis with high spectral resolution, and the dynamics mode focuses on dynamical processes of the atmosphere with very high spatial resolution. In addition, the instrument allows tomographic analyses of air volumes. The first measurement campaigns have shown compliance with key performance and operational requirements.

  1. Medical Image Processing Using Real-Time Optical Fourier Technique

    NASA Astrophysics Data System (ADS)

    Rao, D. V. G. L. N.; Panchangam, Appaji; Sastry, K. V. L. N.; Material Science Team

    2001-03-01

    Optical Image Processing Techniques are inherently fast in view of parallel processing. A self-adaptive Optical Fourier Processing system using photo induced dichroism in a Bacteriorhodopsin film was experimentally demonstrated for medical image processing. Application of this powerful analog all-optical interactive technique for cancer diagnostics is illustrated with mammograms and Pap smears. Micro calcification clusters buried in surrounding tissue showed up clearly in the processed image. By playing with one knob, which rotates the analyzer in the optical system, either the micro calcification clusters or the surrounding dense tissue can be selectively displayed. Bacteriorhodopsin films are stable up to 140^oC and environmental friendly. As no interference is involved in the experiments, vibration isolation and even a coherent light source are not required. It may be possible to develop a low-cost rugged battery operated portable signal-enhancing magnifier.

  2. The gridding method for image reconstruction by Fourier transformation

    SciTech Connect

    Schomberg, H.; Timmer, J.

    1995-09-01

    This paper explores a computational method for reconstructing an n-dimensional signal f from a sampled version of its Fourier transform {cflx f}. The method involves a window function {cflx w} and proceeds in three steps. First, the convolution {cflx g} = {cflx w} * {cflx f} is computed numerically on a Cartesian grid, using the available samples of {cflx f}. Then, g = wf is computed via the inverse discrete Fourier transform, and finally f is obtained as g/w. Due to the smoothing effect of the convolution, evaluating {cflx w} * {cflx f} is much less error prone than merely interpolating {cflx f}. The method was originally devised for image reconstruction in radio astronomy, but is actually applicable to a broad range of reconstructive imaging methods, including magnetic resonance imaging and computed tomography. In particular, it provides a fast and accurate alternative to the filtered backprojection. The basic method has several variants with other applications, such as the equidistant resampling of arbitrarily sampled signals or the fast computation of the Radon (Hough) transform.

  3. An image hiding method based on cascaded iterative Fourier transform and public-key encryption algorithm

    NASA Astrophysics Data System (ADS)

    Zhang, B.; Sang, Jun; Alam, Mohammad S.

    2013-03-01

    An image hiding method based on cascaded iterative Fourier transform and public-key encryption algorithm was proposed. Firstly, the original secret image was encrypted into two phase-only masks M1 and M2 via cascaded iterative Fourier transform (CIFT) algorithm. Then, the public-key encryption algorithm RSA was adopted to encrypt M2 into M2' . Finally, a host image was enlarged by extending one pixel into 2×2 pixels and each element in M1 and M2' was multiplied with a superimposition coefficient and added to or subtracted from two different elements in the 2×2 pixels of the enlarged host image. To recover the secret image from the stego-image, the two masks were extracted from the stego-image without the original host image. By applying public-key encryption algorithm, the key distribution was facilitated, and also compared with the image hiding method based on optical interference, the proposed method may reach higher robustness by employing the characteristics of the CIFT algorithm. Computer simulations show that this method has good robustness against image processing.

  4. Fourier-processed images of dynamic lung function from list-mode data

    SciTech Connect

    Zubal, I.G.; Rowe, R.W.; Bizais, Y.; Susskind, H.; Bennett, G.W.; Brill, A.B.

    1983-01-01

    Time and volume correlated amplitude and phase images are computed from nuclear medical ventilation studies and for dynamic transmission scans of the lungs. This is made possible by a hardware interface and data acquisition system, developed in-house, allowing camera events and multiple ancillary physiological signals (including lung volume) to be acquired simultaneously in list mode. The first harmonic amplitude and phase images are constructed on an event by event basis. These are computed for both equal time and equal lung volume increments. Time and volume correlated Fourier images for ventilation studies have shown details and functional structures not usually seen in conventional imaging techniques. Processed transmission scans show similar results compared to ventilation images.

  5. Stages: sub-Fourier dynamic shim updating using nonlinear magnetic field phase preparation.

    PubMed

    Witschey, Walter R T; Littin, Sebastian; Cocosco, Chris A; Gallichan, Daniel; Schultz, Gerrit; Weber, Hans; Welz, Anna; Hennig, Jürgen; Zaitsev, Maxim

    2014-01-01

    Heterogeneity of the static magnetic field in magnetic resonance imaging may cause image artifacts and degradation in image quality. The field heterogeneity can be reduced by dynamically adjusting shim fields or dynamic shim updating, in which magnetic field homogeneity is optimized for each tomographic slice to improve image quality. A limitation of this approach is that a new magnetic field can be applied only once for each slice, otherwise image quality would improve somewhere to its detriment elsewhere in the slice. The motivation of this work is to overcome this limitation and develop a technique using nonlinear magnetic fields to dynamically shim the static magnetic field within a single Fourier-encoded volume or slice, called sub-Fourier dynamic shim updating. However, the nonlinear magnetic fields are not used as shim fields; instead, they impart a strong spatial dependence to the acquired MR signal by nonlinear phase preparation, which may be exploited to locally improve magnetic field homogeneity during acquisition. A theoretical description of the method is detailed, simulations and a proof-of-principle experiment are performed using a magnet coil with a known field geometry. The method is shown to remove artifacts associated with magnetic field homogeneity in balanced steady-state free-precession pulse sequences. We anticipate that this method will be useful to improve the quality of magnetic resonance images by removing deleterious artifacts associated with a heterogeneous static magnetic field. PMID:23440677

  6. High throughput full Stokes Fourier transform imaging spectropolarimetry.

    PubMed

    Meng, Xin; Li, Jianxin; Xu, Tingting; Liu, Defang; Zhu, Rihong

    2013-12-30

    A complete full Stokes imaging spectropolarimeter is proposed. Four separate polarized spectra are fed into the Sagnac Fourier transform spectrometer without slit using different angle combinations of the polarized elements. The four polarized spectra are separated without spatial aliasing. And the system has a good performance to resist the instrument noise due to its high light throughput. The mathematical model for the approach is derived and an optimization of the retardance is discussed. For acquiring the four spectra simultaneously, an improved robust polarization modulator using aperture division is outlined. Then the system is discussed in detail including the imaging principle and spectral resolution. Lastly, two proven experiments are carried out and the experimental results in visible light are outlined. PMID:24514802

  7. Ultrahigh speed spectral/Fourier domain ophthalmic OCT imaging

    NASA Astrophysics Data System (ADS)

    Potsaid, Benjamin; Gorczynska, Iwona; Srinivasan, Vivek J.; Chen, Yueli; Liu, Jonathan; Jiang, James; Cable, Alex; Duker, Jay S.; Fujimoto, James G.

    2009-02-01

    Ultrahigh speed spectral / Fourier domain optical coherence tomography (OCT) imaging using a CMOS line scan camera with acquisition rates of 70,000 - 312,500 axial scans per second is investigated. Several design configurations are presented to illustrate trade-offs between acquisition speed, sensitivity, resolution and sensitivity roll-off performance. We demonstrate: extended imaging range and improved sensitivity roll-off at 70,000 axial scans per second , high speed and ultrahigh resolution imaging at 106,382 axial scans per second, and ultrahigh speed imaging at 250,000-312,500 axial scans per second. Each configuration is characterized through optical testing and the trade-offs demonstrated with in vivo imaging of the fovea and optic disk in the human retina. OCT fundus images constructed from 3D-OCT data acquired at 250,000 axial scans per second have no noticeable discontinuity of retinal features and show that there are minimal motion artifacts. The fine structures of the lamina cribrosa can be seen. Long cross sectional scans are acquired at 70,000 axial scans per second for imaging large areas of the retina, including the fovea and optic disk. Rapid repeated imaging of a small volume (4D-OCT) enables time resolved visualization of the capillary network surrounding the INL and may show individual red blood cells. The results of this study suggest that high speed CMOS cameras can achieve a significant improvement in performance for ophthalmic imaging. This promises to have a powerful impact in clinical applications by improving early diagnosis, reproducibility of measurements and enabling more sensitive assessment of disease progression or response to therapy.

  8. Integrated photoelasticity through imaging fourier polarimetry of an elliptic retarder.

    PubMed

    Berezhna, S; Berezhnyy, I; Takashi, M

    2001-02-10

    It is shown that three optical parameters that are necessary for stress computation in integrated photoelasticity can be measured with high accuracy by use of a Fourier polarimetry method. Inasmuch as a photoelastic sample, which is an object of investigation in integrated photoelasticity, is a kind of an elliptic retarder, the technique presented here measures relative retardation delta, azimuth angle theta, and ellipticity angle epsilon instead of the characteristic parameters that traditionally have been used in integrated photoelasticity. The ability of the new technique to provide better accuracy with a simpler setup has been proved experimentally. Furthermore, the technique is self-contained as for phase measurement; i.e., it automatically performs phase unwrapping at the points where phase data exceed the value of pi. The full value of a phase at a certain point is retrieved by processing of pi-modulo phase data that have been precisely measured at several wavelengths. The usefulness of the new method for integrated photoelasticity has been demonstrated through measurement of a diametrically compressed disk viewed at oblique light incidence. PMID:18357041

  9. Using a piezoelectric fiber stretcher to remove the depth ambiguity in optical Fourier domain imaging

    NASA Astrophysics Data System (ADS)

    Vergnole, Sébastien; Lamouche, Guy; Dufour, Marc; Gauthier, Bruno

    2007-07-01

    This paper reports the study of an Optical Fourier Domain Imaging (OFDI) setup for optical coherence tomography. One of the main drawbacks of OFDI is its inability to differentiate positive and negative depths. Some setups have already been proposed to remove this depth ambiguity by introducing a modulation by means of electro-optic or acousto-optic modulators. In our setup, we implement a piezoelectric fiber stretcher to generate a periodic phase shift between successive A-scans, thus introducing a transverse modulation. The depth ambiguity is then resolved by performing a Fourier treatment in the transverse direction before processing the data in the axial direction. It is similar to the B-M mode scanning already proposed for Spectral-Domain OCT1 but with a more efficient experimental setup. We discuss the advantages and the drawbacks of our technique compared to the technique based on acousto-optics modulators by comparing images of an onion obtained with both techniques.

  10. Research on algorithm for infrared hyperspectral imaging Fourier transform spectrometer technology

    NASA Astrophysics Data System (ADS)

    Wan, Lifang; Chen, Yan; Liao, Ningfang; Lv, Hang; He, Shufang; Li, Yasheng

    2015-08-01

    This paper reported the algorithm for Infrared Hyperspectral Imaging Radiometric Spectrometer Technology. Six different apodization functions are been used and compared, and the phase corrected technologies of Forman is researched and improved, fast fourier transform(FFT)is been used in this paper instead of the linear convolution to reduce the quantity of computation.The interferograms is achieved by the Infrared Hyperspectral Imaging Radiometric Spectrometer which are corrected and rebuilded by the improved algorithm, this algorithm reduce the noise and accelerate the computing speed with the higher accuracy of spectrometers.

  11. Continued Development of a Planetary Imaging Fourier Transform Spectrometer (PIFTS)

    NASA Technical Reports Server (NTRS)

    Sromovsky, L. A.

    2002-01-01

    This report describes continued efforts to evaluate a breadboard of a Planetary Imaging Fourier Transform Spectrometer (PIFTS). The PIFTS breadboard was developed under prior PIDDP funding. That effort is described in the final report for NASA Grant NAG5-6248 and in two conference papers (Sromovsky et al. 2000; Revercomb et al. 2000). The PIFTS breadboard was designed for near-IR (1-5.2 micrometer imaging of planetary targets with spectral resolving powers of several hundred to several thousand, using an InSb detector array providing at least 64x64 pixels imaging detail. The major focus of the development effort was to combine existing technologies to produce a small and low power design compatible with a very low mass flyable instrument. The objective of this grant (NAG5-10729) was further characterization of the breadboard performance, including intercomparisons with the highly accurate non-imaging Advanced Emitted Radiance Interferometer (AERI) (Revercomb et al. 1994; Best et al. 1997).

  12. Amplitude and phase fourier correlation of ``twin'' GC-spectra of fatty acids from sheep dairy

    NASA Astrophysics Data System (ADS)

    Teusdea, Alin C.; Gabor, Gianina; Hilma, Elena

    2012-08-01

    Authors present the discrimination performances of amplitude and phase-only Fourier correlation over the "twin" typed GC-spectra of sheep milk and ripened cheese. Therefore, in order to assess the most robust Fourier correlation method for the "twin" GC-spectra discrimination, the correlation matrix is built up over 17 analyzed GC-spectra in both amplitude and phase domains.

  13. Phase Contrast Imaging

    SciTech Connect

    Menk, Ralf Hendrik

    2008-11-13

    All standard (medical) x-ray imaging technologies, rely primarily on the amplitude properties of the incident radiation, and do not depend on its phase. This is unchanged since the discovery by Roentgen that the intensity of an x-ray beam, as measured by the exposure on a film, was related to the relative transmission properties of an object. However, recently various imaging techniques have emerged which depend on the phase of the x-rays as well as the amplitude. Phase becomes important when the beam is coherent and the imaging system is sensitive to interference phenomena. Significant new advances have been made in coherent optic theory and techniques, which now promise phase information in medical imaging. The development of perfect crystal optics and the increasing availability of synchrotron radiation facilities have contributed to a significant increase in the application of phase based imaging in materials and life sciences. Unique source characteristics such as high intensity, monochromaticity, coherence and high collimating provide an ideal source for advanced imaging. Phase contrast imaging has been applied in both projection and computed tomography modes, and recent applications have been made in the field of medical imaging. Due to the underlying principle of X-ray detection conventional image receptors register only intensities of wave fields and not their phases. During the last decade basically five different methods were developed that translate the phase information into intensity variations. These methods are based on measuring the phase shift {phi} directly (using interference phenomena), the gradient {nabla}{sub {phi}}, or the Laplacian {nabla}{sup 2}{phi}. All three methods can be applied to polychromatic X-ray sources keeping in mind that the native source is synchrotron radiation, featuring monochromatic and reasonable coherent X-ray beams. Due to the vast difference in the coefficients that are driven absorption and phase effects (factor 1

  14. Multiresolution graph Fourier transform for compression of piecewise smooth images.

    PubMed

    Hu, Wei; Cheung, Gene; Ortega, Antonio; Au, Oscar C

    2015-01-01

    Piecewise smooth (PWS) images (e.g., depth maps or animation images) contain unique signal characteristics such as sharp object boundaries and slowly varying interior surfaces. Leveraging on recent advances in graph signal processing, in this paper, we propose to compress the PWS images using suitable graph Fourier transforms (GFTs) to minimize the total signal representation cost of each pixel block, considering both the sparsity of the signal's transform coefficients and the compactness of transform description. Unlike fixed transforms, such as the discrete cosine transform, we can adapt GFT to a particular class of pixel blocks. In particular, we select one among a defined search space of GFTs to minimize total representation cost via our proposed algorithms, leveraging on graph optimization techniques, such as spectral clustering and minimum graph cuts. Furthermore, for practical implementation of GFT, we introduce two techniques to reduce computation complexity. First, at the encoder, we low-pass filter and downsample a high-resolution (HR) pixel block to obtain a low-resolution (LR) one, so that a LR-GFT can be employed. At the decoder, upsampling and interpolation are performed adaptively along HR boundaries coded using arithmetic edge coding, so that sharp object boundaries can be well preserved. Second, instead of computing GFT from a graph in real-time via eigen-decomposition, the most popular LR-GFTs are pre-computed and stored in a table for lookup during encoding and decoding. Using depth maps and computer-graphics images as examples of the PWS images, experimental results show that our proposed multiresolution-GFT scheme outperforms H.264 intra by 6.8 dB on average in peak signal-to-noise ratio at the same bit rate. PMID:25494508

  15. Comparison of kinoform synthesis methods for image reconstruction in Fourier plane

    NASA Astrophysics Data System (ADS)

    Cheremkhin, Pavel A.; Evtikhiev, Nikolay N.; Krasnov, Vitaly V.; Porshneva, Liudmila A.; Rodin, Vladislav G.; Starikov, Sergey N.

    2014-05-01

    Kinoform is synthesized phase diffractive optical element which allows to reconstruct image by its illumination with plane wave. Kinoforms are used in image processing systems. For tasks of kinoform synthesis iterative methods had become wide-spread because of relatively small error of resulting intensity distribution. There are articles in which two or three iterative methods are compared but they use only one or several test images. The goal of this work is to compare iterative methods by using many test images of different types. Images were reconstructed in Fourier plane from synthesized kinoforms displayed on phase-only LCOS SLM. Quality of reconstructed images and computational resources of the methods were analyzed. For kinoform synthesis four methods were implemented in programming environment: Gerchberg-Saxton algorithm (GS), Fienup algorithm (F), adaptive-additive algorithm (AA) and Gerchberg-Saxton algorithm with weight coefficients (GSW). To compare these methods 50 test images with different characteristics were used: binary and grayscale, contour and non-contour. Resolution of images varied from 64×64 to 1024×1024. Occupancy of images ranged from 0.008 to 0.89. Quantity of phase levels of synthesized kinoforms was 256 which is equal to number of phase levels of SLM LCOS HoloEye PLUTO VIS. Under numerical testing it was found that the best quality of reconstructed images provides the AA method. The GS, F and GSW methods showed worse results but roughly similar between each other. Execution time of single iteration of the analyzed methods is minimal for the GS method. The F method provides maximum execution time. Synthesized kinoforms were optically reconstructed using phase-only LCOS SLM HoloEye PLUTO VIS. Results of optical reconstruction were compared to the numerical ones. The AA method showed slightly better results than other methods especially in case of gray-scale images.

  16. Feasibility Demonstration of Wide-Field Fourier-Spectroscopic-Imaging in Infrared Region

    NASA Astrophysics Data System (ADS)

    Qi, Wei; Takuma, Takashi; Tsutsumi, Ryosuke; Inui, Asuka; Kagiyama, Hiroyasu; Kojima, Daisuke; Nishiyama, Akira; Ishimaru, Ichirou

    We are aiming at the realization of living-environment sensor and non-invasive blood-sugar sensor by the proposed imaging type 2-D Fourier spectroscopy. This method is based on the phase-shift interference between the object beams. As a result, even if the object beams are spatially incoherent, we can observe the phase-shift interference phenomena. In the near infrared region, we can obtain the high-contrast blood vessel image of mouse's ear in the deeper part by InGaAs camera. Furthermore, in the mid-infrared region, we have successfully measured the radiation spectroscopic-imaging with wild field of view by the infrared module, such as the house plants.

  17. Reconstruction of piecewise homogeneous images from partial knowledge of their Fourier Transform

    NASA Astrophysics Data System (ADS)

    Féron, Olivier; Chama, Zouaoui; Mohammad-Djafari, Ali

    2004-11-01

    Fourier synthesis (FS) inverse problem consists in reconstructing a multi-variable function from the measured data which correspond to partial and uncertain knowledge of its Fourier Transform (FT). By partial knowledge we mean either partial support and/or the knowledge of only the module and by uncertain we mean both uncertainty of the model and noisy data. This inverse problem arises in many applications such as : optical imaging, radio astronomy, magnetic resonance imaging (MRI) and diffraction scattering (ultrasounds or microwave imaging). Most classical methods of inversion are based on interpolation of the data and fast inverse FT. But when the data do not fill uniformly the Fourier domain or when the phase of the signal is lacking as in optical interferometry, the results obtained by such methods are not satisfactory, because these inverse problems are ill-posed. The Bayesian estimation approach, via an appropriate modeling of the unknown functions gives the possibility of compensating the lack of information in the data, thus giving satisfactory results. In this paper we study the case where the observations are a part of the FT modulus of objects which are composed of a few number of homogeneous materials. To model such objects we use a Hierarchical Hidden Markov Modeling (HMM) and propose a Bayesian inversion method using appropriate Markov Chain Monte Carlo (MCMC) algorithms.

  18. Optimized multiplexing super resolution imaging based on a Fourier ptychographic microscope

    NASA Astrophysics Data System (ADS)

    Sun, Jiasong; Chen, Qian; Zhang, Yuzhen; Zuo, Chao; Feng, Shijie; Hu, Yan; Zhang, Jialin

    2015-10-01

    Fourier ptychographic microscopy (FPM) is a recently developed super-resolution technique by using angularly varying illumination and a phase retrieval algorithm to surpass the diffraction limit of the objective lens. To be specific, FP captures a set of low-resolution (LR) images under angularly varying illuminations, and combines them into one high-resolution (HR) image in the Fourier domain. However, the long capturing process becomes an obvious limitation since there are large number of images need to be acquired. Furthermore, the time can be increased several times over in order to acquire high-dynamic range images. Utilizing the multiplexing principle, we propose an optimized multiplexing FP algorithm, which is highly efficient, to shorten the exposure time of each raw image in this work. High acquisition efficiency is achieved by employing two set of optimized multiplexing patterns for bright-field and dark-field imaging respectively. Experimental results demonstrated that this method could improve the quality of reconstructed HR intensity distributions in a faster measuring process.

  19. ULTRASOUND PULSE-ECHO IMAGING USING THE SPLIT-STEP FOURIER PROPAGATOR

    SciTech Connect

    HUANG, LIANJIE; QUAN, YOULI

    2007-01-31

    Ultrasonic reflection imaging has the potential to produce higher image resolution than transmission tomography, but imaging resolution and quality still need to be further improved for early cancer detection and diagnosis. We present an ultrasound reflection image reconstruction method using the split-step Fourier propagator. It is based on recursive inward continuation of ultrasonic wavefields in the frequency-space and frequency-wavenumber domains. The inward continuation within each extrapolation interval consists of two steps. In the first step, a phase-shift term is applied to the data in the frequency-wavenumber domain for propagation in a reference medium. The second step consists of applying another phase-shift term to data in the frequency-space domain to approximately compensate for ultrasonic scattering effects of heterogeneities within the breast. We use synthetic ultrasound pulse-echo data recorded around a ring for heterogeneous, computer-generated numerical breast phantoms to study the imaging capability of the method. The phantoms are derived from an experimental breast phantom and a sound-speed tomography image of an in-vivo ultrasound breast data collected usi ng a ring array. The heterogeneous sound-speed models used for pulse-echo imaging are obtained using a computationally efficient, first-arrival-time (time-of-flight) transmission tomography method. Our studies demonstrate that reflection image reconstruction using the split-step Fourier propagator with heterogeneous sound-speed models significantly improves image quality and resolution. We also numerically verify the spatial sampling criterion of wavefields for a ring transducer array.

  20. Imaging Fourier Transform Spectro-polarimetry in the Infrared

    NASA Astrophysics Data System (ADS)

    Jurgenson, C. A.; Stencel, R. E.; Stout, J.

    2004-12-01

    Imaging spectro-polarimetry has the capability to trace polarization changes in dust grains throughout an extended region of interest. An instrument that has the capability to achieve moderately high resolution (R = 2000 at 10 microns) via a stepping Fourier transform spectrometer, while preserving imaging polarimetry capabilities (TNTCAM2, Jurgenson et al. 2003), is set to achieve first light during early 2005. Motion control of the interferometer, as well as array control/readout is accomplished via an FPGA card programmed in LabVIEW(c). Mid-IR polarization studies are useful in approximating grain shapes and sizes in dusty environments. Correlation studies between mid and near-IR features can be used to test the core-mantle arrangement of grain growth. Polarization analysis is currently only possible between 8-13 microns, but the interferometer, as well as TNTCAM2, can operate at selected bandpasses in the near-IR region. A wire grid and waveplate would need to be purchased for work in the near-IR. Laboratory calibration results, both spectral and polarization, are reported. We are seeking collaborators in shared-risk science with this instrument, so please contact the authors if interested. Sigma Xi Grants In Aid of Research as well as the estate of William Herschel Womble provided funding for this endeavor.

  1. Ghost imaging of phase objects with classical incoherent light

    SciTech Connect

    Shirai, Tomohiro; Setaelae, Tero; Friberg, Ari T.

    2011-10-15

    We describe an optical setup for performing spatial Fourier filtering in ghost imaging with classical incoherent light. This is achieved by a modification of the conventional geometry for lensless ghost imaging. It is shown on the basis of classical coherence theory that with this technique one can realize what we call phase-contrast ghost imaging to visualize pure phase objects.

  2. Recognition of rotated images using the multi-valued neuron and rotation-invariant 2D Fourier descriptors

    NASA Astrophysics Data System (ADS)

    Aizenberg, Evgeni; Bigio, Irving J.; Rodriguez-Diaz, Eladio

    2012-03-01

    The Fourier descriptors paradigm is a well-established approach for affine-invariant characterization of shape contours. In the work presented here, we extend this method to images, and obtain a 2D Fourier representation that is invariant to image rotation. The proposed technique retains phase uniqueness, and therefore structural image information is not lost. Rotation-invariant phase coefficients were used to train a single multi-valued neuron (MVN) to recognize satellite and human face images rotated by a wide range of angles. Experiments yielded 100% and 96.43% classification rate for each data set, respectively. Recognition performance was additionally evaluated under effects of lossy JPEG compression and additive Gaussian noise. Preliminary results show that the derived rotation-invariant features combined with the MVN provide a promising scheme for efficient recognition of rotated images.

  3. High-resolution wave-theory-based ultrasound reflection imaging using the split-step fourier and globally optimized fourier finite-difference methods

    SciTech Connect

    Huang, Lianjie

    2013-10-29

    Methods for enhancing ultrasonic reflection imaging are taught utilizing a split-step Fourier propagator in which the reconstruction is based on recursive inward continuation of ultrasonic wavefields in the frequency-space and frequency-wave number domains. The inward continuation within each extrapolation interval consists of two steps. In the first step, a phase-shift term is applied to the data in the frequency-wave number domain for propagation in a reference medium. The second step consists of applying another phase-shift term to data in the frequency-space domain to approximately compensate for ultrasonic scattering effects of heterogeneities within the tissue being imaged (e.g., breast tissue). Results from various data input to the method indicate significant improvements are provided in both image quality and resolution.

  4. Palm-size wide-field Fourier spectroscopic imager with uncooled infrared microbolometer arrays for smartphone

    NASA Astrophysics Data System (ADS)

    Kawashima, Natsumi; Suzuki, Yo; Qi, Wei; Hosono, Satsuki; Saito, Tsubasa; Ogawa, Satoshi; Sato, Shun; Fujiwara, Masaru; Nishiyama, Akira; Wada, Kenji; Tanaka, Naotaka; Ishimaru, Ichiro

    2015-03-01

    We proposed the imaging-type 2-dimensional Fourier spectroscopy that is a near-common-path interferometer with strong robustness against mechanical vibrations. We introduced the miniature uncooled infrared microbolometer arrays for smartphone (e.g. product name: FILR ONE price: around 400USD). And we constructed the phase-shifter with the piezo impact drive mechanism (maker: Technohands.co.Ltd., stroke: 4.5mm, resolution: 0.01μm, size: 20mm, price: around 800USD). Thus, we realized the palm-size mid-infrared spectroscopic imager [size: L56mm×W69mm×H43mm weight: 500g]. And by using wide-angle lens as objective lens, the proposed method can obtain the wide-field 2- dimensional middle-infrared (wavelength: 7.5-13.5[μm]) spectroscopic imaging of radiation lights emitted from human bodies itself

  5. Geostationary Imaging Fourier Transform Spectrometer (GIFTS): science applications

    NASA Astrophysics Data System (ADS)

    Smith, W. L.; Revercomb, H. E.; Zhou, D. K.; Bingham, G. E.; Feltz, W. F.; Huang, H. L.; Knuteson, R. O.; Larar, A. M.; Liu, X.; Reisse, R.; Tobin, D. C.

    2006-12-01

    A revolutionary satellite weather forecasting instrument, called the "GIFTS" which stands for the "Geostationary Imaging Fourier Transform Spectrometer", was recently completed and successfully tested in a space chamber at the Utah State University's Space Dynamics Laboratory. The GIFTS was originally proposed by the NASA Langley Research Center, the University of Wisconsin, and the Utah State University and selected for flight demonstration as NASA's New Millennium Program (NMP) Earth Observing-3 (EO-3) mission, which was unfortunately cancelled in 2004. GIFTS is like a digital 3-d movie camera that, when mounted on a geostationary satellite, would provide from space a revolutionary four-dimensional view of the Earth's atmosphere. GIFTS will measure the distribution, change, and movement of atmospheric moisture, temperature, and certain pollutant gases, such as carbon monoxide and ozone. The observation of the convergence of invisible water vapor, and the change of atmospheric temperature, provides meteorologists with the observations needed to predict where, and when, severe thunderstorms, and possibly tornados, would occur, before they are visible on radar or in satellite cloud imagery. The ability of GIFTS to observe the motion of moisture and clouds at different altitudes enables atmospheric winds to be observed over vast, and otherwise data sparse, oceanic regions of the globe. These wind observations would provide the means to greatly improve the forecast of where tropical storms and hurricanes will move and where and when they will come ashore (i.e., their landfall position and time). GIFTS, if flown into geostationary orbit, would provide about 80,000 vertical profiles per minute, each one like a low vertical resolution (1-2km) weather balloon sounding, but with a spacing of 4 km. GIFTS is a revolutionary atmospheric sensing tool. A glimpse of the science measurement capabilities of GIFTS is provided through airborne measurements with the NPOESS Airborne

  6. Neural network calibration of a snapshot birefringent Fourier transform spectrometer with periodic phase errors.

    PubMed

    Luo, David; Kudenov, Michael W

    2016-05-16

    Systematic phase errors in Fourier transform spectroscopy can severely degrade the calculated spectra. Compensation of these errors is typically accomplished using post-processing techniques, such as Fourier deconvolution, linear unmixing, or iterative solvers. This results in increased computational complexity when reconstructing and calibrating many parallel interference patterns. In this paper, we describe a new method of calibrating a Fourier transform spectrometer based on the use of artificial neural networks (ANNs). In this way, it is demonstrated that a simpler and more straightforward reconstruction process can be achieved at the cost of additional calibration equipment. To this end, we provide a theoretical model for general systematic phase errors in a polarization birefringent interferometer. This is followed by a discussion of our experimental setup and a demonstration of our technique, as applied to data with and without phase error. The technique's utility is then supported by comparison to alternative reconstruction techniques using fast Fourier transforms (FFTs) and linear unmixing. PMID:27409947

  7. Rotational-translational fourier imaging system requiring only one grid pair

    NASA Technical Reports Server (NTRS)

    Campbell, Jonathan W. (Inventor)

    2006-01-01

    The sky contains many active sources that emit X-rays, gamma rays, and neutrons. Unfortunately hard X-rays, gamma rays, and neutrons cannot be imaged by conventional optics. This obstacle led to the development of Fourier imaging systems. In early approaches, multiple grid pairs were necessary in order to create rudimentary Fourier imaging systems. At least one set of grid pairs was required to provide multiple real components of a Fourier derived image, and another set was required to provide multiple imaginary components of the image. It has long been recognized that the expense associated with the physical production of the numerous grid pairs required for Fourier imaging was a drawback. Herein one grid pair (two grids), with accompanying rotation and translation, can be used if one grid has one more slit than the other grid, and if the detector is modified.

  8. The Pegg-Barnett phase operator and the discrete Fourier transform

    NASA Astrophysics Data System (ADS)

    Perez-Leija, Armando; Andrade-Morales, Luis A.; Soto-Eguibar, Francisco; Szameit, Alexander; Moya-Cessa, Héctor M.

    2016-04-01

    In quantum mechanics the position and momentum operators are related to each other via the Fourier transform. In the same way, here we show that the so-called Pegg-Barnett phase operator can be obtained by the application of the discrete Fourier transform to the number operators defined in a finite-dimensional Hilbert space. Furthermore, we show that the structure of the London-Susskind-Glogower phase operator, whose natural logarithm gives rise to the Pegg-Barnett phase operator, is contained in the Hamiltonian of circular waveguide arrays. Our results may find applications in the development of new finite-dimensional photonic systems with interesting phase-dependent properties.

  9. Midwave infrared imaging Fourier transform spectrometry of combustion plumes

    NASA Astrophysics Data System (ADS)

    Bradley, Kenneth C.

    A midwave infrared (MWIR) imaging Fourier transform spectrometer (IFTS) was used to successfully capture and analyze hyperspectral imagery of combustion plumes. Jet engine exhaust data from a small turbojet engine burning diesel fuel at a low rate of 300 cm3/min was collected at 1 cm -1 resolution from a side-plume vantage point on a 200x64 pixel window at a range of 11.2 meters. Spectral features of H2O, CO, and CO2 were present, and showed spatial variability within the plume structure. An array of thermocouple probes was positioned within the plume to aid in temperature analysis. A single-temperature plume model was implemented to obtain spatially-varying temperatures and plume concentrations. Model-fitted temperatures of 811 +/- 1.5 K and 543 +/- 1.6 K were obtained from plume regions in close proximity to thermocouple probes measuring temperatures of 719 K and 522 K, respectively. Industrial smokestack plume data from a coal-burning stack collected at 0.25 cm-1 resolution at a range of 600 meters featured strong emission from NO, CO, CO2, SO 2, and HCl in the spectral region 1800-3000 cm-1. A simplified radiative transfer model was employed to derive temperature and concentrations for clustered regions of the 128x64 pixel scene, with corresponding statistical error bounds. The hottest region (closest to stack centerline) was 401 +/- 0.36 K, compared to an in-stack measurement of 406 K, and model-derived concentration values of NO, CO2, and SO2 were 140 +/- 1 ppmV, 110,400 +/- 950 ppmV, and 382 +/- 4 ppmV compared to in-stack measurements of 120 ppmV (NOx), 94,000 ppmV, and 382 ppmV, respectively. In-stack measurements of CO and HCl were not provided by the stack operator, but model-derived values of 19 +/- 0.2 ppmV and 111 +/- 1 ppmV are reported near stack centerline. A deployment to Dugway Proving Grounds, UT to collect hyperspectral imagery of chemical and biological threat agent simulants resulted in weak spectral signatures from several species. Plume

  10. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography

    PubMed Central

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-01-01

    This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18. PMID:26977345

  11. Wide field-of-view fluorescence image deconvolution with aberration-estimation from Fourier ptychography.

    PubMed

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-02-01

    This paper presents a method to simultaneously acquire an aberration-corrected, wide field-of-view fluorescence image and a high-resolution coherent bright-field image using a computational microscopy method. First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff spatial frequency of the microscope objective lens. At the same time, redundancy within the set of acquired FPM bright-field images offers a means to estimate microscope aberrations. Second, the procedure acquires an aberrated fluorescence image, and computationally improves its resolution through deconvolution with the estimated aberration map. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by up to 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of at least ~18. PMID:26977345

  12. Complete fourier direct magnetic resonance imaging (CFD-MRI) for diffusion MRI

    PubMed Central

    Özcan, Alpay

    2013-01-01

    The foundation for an accurate and unifying Fourier-based theory of diffusion weighted magnetic resonance imaging (DW–MRI) is constructed by carefully re-examining the first principles of DW–MRI signal formation and deriving its mathematical model from scratch. The derivations are specifically obtained for DW–MRI signal by including all of its elements (e.g., imaging gradients) using complex values. Particle methods are utilized in contrast to conventional partial differential equations approach. The signal is shown to be the Fourier transform of the joint distribution of number of the magnetic moments (at a given location at the initial time) and magnetic moment displacement integrals. In effect, the k-space is augmented by three more dimensions, corresponding to the frequency variables dual to displacement integral vectors. The joint distribution function is recovered by applying the Fourier transform to the complete high-dimensional data set. In the process, to obtain a physically meaningful real valued distribution function, phase corrections are applied for the re-establishment of Hermitian symmetry in the signal. Consequently, the method is fully unconstrained and directly presents the distribution of displacement integrals without any assumptions such as symmetry or Markovian property. The joint distribution function is visualized with isosurfaces, which describe the displacement integrals, overlaid on the distribution map of the number of magnetic moments with low mobility. The model provides an accurate description of the molecular motion measurements via DW–MRI. The improvement of the characterization of tissue microstructure leads to a better localization, detection and assessment of biological properties such as white matter integrity. The results are demonstrated on the experimental data obtained from an ex vivo baboon brain. PMID:23596401

  13. Spatial Phase Imaging

    NASA Technical Reports Server (NTRS)

    2006-01-01

    Frequently, scientists grow crystals by dissolving a protein in a specific liquid solution, and then allowing that solution to evaporate. The methods used next have been, variously, invasive (adding a dye that is absorbed by the protein), destructive (crushing protein/salt-crystal mixtures and observing differences between the crushing of salt and protein), or costly and time-consuming (X-ray crystallography). In contrast to these methods, a new technology for monitoring protein growth, developed in part through NASA Small Business Innovation Research (SBIR) funding from Marshall Space Flight Center, is noninvasive, nondestructive, rapid, and more cost effective than X-ray analysis. The partner for this SBIR, Photon-X, Inc., of Huntsville, Alabama, developed spatial phase imaging technology that can monitor crystal growth in real time and in an automated mode. Spatial phase imaging scans for flaws quickly and produces a 3-D structured image of a crystal, showing volumetric growth analysis for future automated growth.

  14. Single-Grid-Pair Fourier Telescope for Imaging in Hard-X Rays and gamma Rays

    NASA Technical Reports Server (NTRS)

    Campbell, Jonathan

    2008-01-01

    This instrument, a proposed Fourier telescope for imaging in hard-x rays and gamma rays, would contain only one pair of grids made of an appropriate radiation-absorpting/ scattering material, in contradistinction to multiple pairs of such as grids in prior Fourier x- and gamma-ray telescopes. This instrument would also include a relatively coarse gridlike image detector appropriate to the radiant flux to be imaged. Notwithstanding the smaller number of grids and the relative coarseness of the imaging detector, the images produced by the proposed instrument would be of higher quality.

  15. Compact imaging spectrometer combining Fourier transform spectroscopy with a Fabry-Perot interferometer.

    PubMed

    Pisani, Marco; Zucco, Massimo

    2009-05-11

    An imaging spectrometer based on a Fabry-Perot interferometer is presented. The Fabry-Perot interferometer scans the mirror distance up to contact and the intensity modulated light signal is transformed using a Fourier Transform based algorithm, as the Michelson based Fourier Transform Spectrometers does. The resulting instrument has the advantage of a compact, high numerical aperture, high luminosity hyperspectral imaging device. Theory of operation is described along with one experimental realization and preliminary results. PMID:19434165

  16. A generalized Fourier penalty in prior-image-based reconstruction for cross-platform imaging

    NASA Astrophysics Data System (ADS)

    Pourmorteza, A.; Siewerdsen, J. H.; Stayman, J. W.

    2016-03-01

    Sequential CT studies present an excellent opportunity to apply prior-image-based reconstruction (PIBR) methods that leverage high-fidelity prior imaging studies to improve image quality and/or reduce x-ray exposure in subsequent studies. One major obstacle in using PIBR is that the initial and subsequent studies are often performed on different scanners (e.g. diagnostic CT followed by CBCT for interventional guidance); this results in mismatch in attenuation values due to hardware and software differences. While improved artifact correction techniques can potentially mitigate such differences, the correction is often incomplete. Here, we present an alternate strategy where the PIBR itself is used to mitigate these differences. We define a new penalty for the previously introduced PIBR called Reconstruction of Difference (RoD). RoD differs from many other PIBRs in that it reconstructs only changes in the anatomy (vs. reconstructing the current anatomy). Direct regularization of the difference image in RoD provides an opportunity to selectively penalize spatial frequencies of the difference image (e.g. low frequency differences associated with attenuation offsets and shading artifacts) without interfering with the variations in unchanged background image. We leverage this flexibility and introduce a novel regularization strategy using a generalized Fourier penalty within the RoD framework and develop the modified reconstruction algorithm. We evaluate the performance of the new approach in both simulation studies and in physical CBCT test-bench data. We find that generalized Fourier penalty can be highly effective in reducing low-frequency x-ray artifacts through selective suppression of spatial frequencies in the reconstructed difference image.

  17. Optical Fourier and Holographic Techniques for Medical Image Processing with Bacteriorhodopsin

    NASA Astrophysics Data System (ADS)

    Yelleswarapu, Chandra

    2008-03-01

    The biological photochrome bacteriorhodopsin (bR) shows many intrinsic optical and physical properties. The active chromophore in bR is a retinal group which absorbs light and goes through a photocycle. The unique feature of the system is its flexibility -- the photocycle can be optically controllable since the process of photoisomerization can go in both directions depending on wavelength, intensity and polarization of the incident light, opening a variety of possibilities for manipulating amplitude, phase, polarization and index of refraction of the incident light. Over the years we studied the basic nonlinear optics and successfully exploited the unique properties for several optical spatial filtering techniques with applications in medical image processing. For nonlinear Fourier filtering, the photo-controlled light modulating characteristics of bR films are exploited. At the Fourier plane, the spatial frequency information carried by a blue probe beam at 442 nm is selectively manipulated in the bR film by changing the position and intensity of a yellow control beam at 568 nm. In transient Fourier holography, photoisomerizative gratings are recorded and reconstructed in bR films. Desired spatial frequencies are obtained by matching the reference beam intensity to that of the particular frequency band in object beam. A novel feature of the technique is the ability to transient display of selected spatial frequencies in the reconstructing process which enables radiologists to study the features of interest in time scale. The results offer useful information to radiologists for early detection of breast cancer. Some of the highlights will be presented.

  18. Image watermarking extraction using Fourier domain Wiener filter

    NASA Astrophysics Data System (ADS)

    Birch, Philip; Pavlidis, Marios; Panwar, Ankit; Nnamadim, Ozoemena; Kypraios, Ioannis; Mitra, Bhargav; Young, Rupert; Chatwin, Chris

    2008-03-01

    Digital watermarking is a vital process for protecting the copyright of images. This paper presents a method of embedding a private robust watermark into a digital image. The full complex form the Wiener filter is used to extract the signal from the watermarked image. This is shown to outperform the more conventional approximate notation. The results are shown to be extremely noise insensitive.

  19. Nonlinear phased array imaging

    NASA Astrophysics Data System (ADS)

    Croxford, Anthony J.; Cheng, Jingwei; Potter, Jack N.

    2016-04-01

    A technique is presented for imaging acoustic nonlinearity within a specimen using ultrasonic phased arrays. Acoustic nonlinearity is measured by evaluating the difference in energy of the transmission bandwidth within the diffuse field produced through different focusing modes. The two different modes being classical beam forming, where delays are applied to different element of a phased array to physically focus the energy at a single location (parallel firing) and focusing in post processing, whereby one element at a time is fired and a focused image produced in post processing (sequential firing). Although these two approaches are linearly equivalent the difference in physical displacement within the specimen leads to differences in nonlinear effects. These differences are localized to the areas where the amplitude is different, essentially confining the differences to the focal point. Direct measurement at the focal point are however difficult to make. In order to measure this the diffuse field is used. It is a statistical property of the diffuse field that it represents the total energy in the system. If the energy in the diffuse field for both the sequential and parallel firing case is measured then the difference between these, within the input signal bandwidth, is largely due to differences at the focal spot. This difference therefore gives a localized measurement of where energy is moving out of the transmission bandwidth due to nonlinear effects. This technique is used to image fatigue cracks and other damage types undetectable with conventional linear ultrasonic measurements.

  20. Periodic artifact reduction in Fourier transforms of full field atomic resolution images.

    PubMed

    Hovden, Robert; Jiang, Yi; Xin, Huolin L; Kourkoutis, Lena F

    2015-04-01

    The discrete Fourier transform is among the most routine tools used in high-resolution scanning/transmission electron microscopy (S/TEM). However, when calculating a Fourier transform, periodic boundary conditions are imposed and sharp discontinuities between the edges of an image cause a cross patterned artifact along the reciprocal space axes. This artifact can interfere with the analysis of reciprocal lattice peaks of an atomic resolution image. Here we demonstrate that the recently developed Periodic Plus Smooth Decomposition technique provides a simple, efficient method for reliable removal of artifacts caused by edge discontinuities. In this method, edge artifacts are reduced by subtracting a smooth background that solves Poisson's equation with boundary conditions set by the image's edges. Unlike the traditional windowed Fourier transforms, Periodic Plus Smooth Decomposition maintains sharp reciprocal lattice peaks from the image's entire field of view. PMID:25597865

  1. Convex optimization-based windowed Fourier filtering with multiple windows for wrapped-phase denoising.

    PubMed

    Yatabe, Kohei; Oikawa, Yasuhiro

    2016-06-10

    The windowed Fourier filtering (WFF), defined as a thresholding operation in the windowed Fourier transform (WFT) domain, is a successful method for denoising a phase map and analyzing a fringe pattern. However, it has some shortcomings, such as extremely high redundancy, which results in high computational cost, and difficulty in selecting an appropriate window size. In this paper, an extension of WFF for denoising a wrapped-phase map is proposed. It is formulated as a convex optimization problem using Gabor frames instead of WFT. Two Gabor frames with differently sized windows are used simultaneously so that the above-mentioned issues are resolved. In addition, a differential operator is combined with a Gabor frame in order to preserve discontinuity of the underlying phase map better. Some numerical experiments demonstrate that the proposed method is able to reconstruct a wrapped-phase map, even for a severely contaminated situation. PMID:27409020

  2. Fabrication and Testing of Binary-Phase Fourier Gratings for Nonuniform Array Generation

    NASA Technical Reports Server (NTRS)

    Keys, Andrew S.; Crow, Robert W.; Ashley, Paul R.; Nelson, Tom R., Jr.; Parker, Jack H.; Beecher, Elizabeth A.

    2004-01-01

    This effort describes the fabrication and testing of binary-phase Fourier gratings designed to generate an incoherent array of output source points with nonuniform user-defined intensities, symmetric about the zeroth order. Like Dammann fanout gratings, these binary-phase Fourier gratings employ only two phase levels to generate a defined output array. Unlike Dammann fanout gratings, these gratings generate an array of nonuniform, user-defined intensities when projected into the far-field regime. The paper describes the process of design, fabrication, and testing for two different version of the binary-phase grating; one designed for a 12 micron wavelength, referred to as the Long-Wavelength Infrared (LWIR) grating, and one designed for a 5 micron wavelength, referred to as the Mid-Wavelength Infrared Grating (MWIR).

  3. In vivo human retinal imaging by Fourier domain optical coherence tomography.

    PubMed

    Wojtkowski, Maciej; Leitgeb, Rainer; Kowalczyk, Andrzej; Bajraszewski, Tomasz; Fercher, Adolf F

    2002-07-01

    We present what is to our knowledge the first in vivo tomograms of human retina obtained by Fourier domain optical coherence tomography. We would like to show that this technique might be as powerful as other optical coherence tomography techniques in the ophthalmologic imaging field. The method, experimental setup, data processing, and images are discussed. PMID:12175297

  4. Implementation and assessment of diffusion-weighted partial Fourier readout-segmented echo-planar imaging.

    PubMed

    Frost, Robert; Porter, David A; Miller, Karla L; Jezzard, Peter

    2012-08-01

    Single-shot echo-planar imaging has been used widely in diffusion magnetic resonance imaging due to the difficulties in correcting motion-induced phase corruption in multishot data. Readout-segmented EPI has addressed the multishot problem by introducing a two-dimensional nonlinear navigator correction with online reacquisition of uncorrectable data to enable acquisition of high-resolution diffusion data with reduced susceptibility artifact and T*(2) blurring. The primary shortcoming of readout-segmented EPI in its current form is its long acquisition time (longer than similar resolution single-shot echo-planar imaging protocols by approximately the number of readout segments), which limits the number of diffusion directions. By omitting readout segments at one side of k-space and using partial Fourier reconstruction, readout-segmented EPI imaging times could be reduced. In this study, the effects of homodyne and projection onto convex sets reconstructions on estimates of the fractional anisotropy, mean diffusivity, and diffusion orientation in fiber tracts and raw T(2)- and trace-weighted signal are compared, along with signal-to-noise ratio results. It is found that projections onto convex sets reconstruction with 3/5 segments in a 2 mm isotropic diffusion tensor image acquisition and 9/13 segments in a 0.9 × 0.9 × 4.0 mm(3) diffusion-weighted image acquisition provide good fidelity relative to the full k-space parameters. This allows application of readout-segmented EPI to tractography studies, and clinical stroke and oncology protocols. PMID:22535706

  5. Phase-space distributions in quasi-polar coordinates and the fractional Fourier transform.

    PubMed

    Alieva, T; Bastiaans, M J

    2000-12-01

    The ambiguity function and Cohen's class of bilinear phase-space distributions are represented in a quasipolar coordinate system instead of in a Cartesian system. Relationships between these distributions and the fractional Fourier transform are derived; in particular, derivatives of the ambiguity function are related to moments of the fractional power spectra. A simplification is achieved for the description of underspread signals, for optical beam characterization, and for the generation of signal-adaptive phase-space distributions. PMID:11140493

  6. Experimental geometry for simultaneous beam characterization and sample imaging allowing for pink beam Fourier transform holography or coherent diffractive imaging

    SciTech Connect

    Flewett, Samuel; Eisebitt, Stefan

    2011-02-20

    One consequence of the self-amplified stimulated emission process used to generate x rays in free electron lasers (FELs) is the intrinsic shot-to-shot variance in the wavelength and temporal coherence. In order to optimize the results from diffractive imaging experiments at FEL sources, it will be advantageous to acquire a means of collecting coherence and spectral information simultaneously with the diffraction pattern from the sample we wish to study. We present a holographic mask geometry, including a grating structure, which can be used to extract both temporal and spatial coherence information alongside the sample scatter from each individual FEL shot and also allows for the real space reconstruction of the sample using either Fourier transform holography or iterative phase retrieval.

  7. Robust Global Image Registration Based on a Hybrid Algorithm Combining Fourier- and Spatial-domain Techniques

    NASA Astrophysics Data System (ADS)

    Crabtree, P.; McNicholl, P.; Seanor, C.; Murray-Krezan, J.

    2012-09-01

    A variety of image registration techniques have been investigated for applications such as image analysis, fusion, compression, enhancement, and creating mosaics. In particular, robust registration is a key component for successful multi-frame processing aimed at super-resolution or high dynamic range imaging. Image registration techniques are broadly categorized as global (area) or feature-based, and can also be classified as being performed in either the Fourier- or spatial-domain. Spatial domain methods are typically used for applications requiring accurate estimation of sub-pixel motion, such as multi-frame super-resolution based on de-aliasing. However, these techniques often rely on the availability of a priori information (good initial guess), and are therefore limited in terms of the dynamic range of the global motion estimates. A Gaussian pyramid approach is one standard method for extending the region of convergence of spatial domain techniques. On the other hand, Fourier domain-based correlation techniques such as the log-polar FFT method provide fast and reasonably accurate estimates of global shifts, rotation, and uniform scale changes, and tend to perform well over a large range of frame-to-frame motion magnitudes. In this paper we explore several possible hybrid algorithms for robust global registration based on combining the log-polar FFT and spatial-domain techniques. This includes the straightforward use of the log-polar FFT algorithm to generate an initial guess for use by a spatial domain algorithm, as well as the intertwining of the two methods by applying both global correlation and spatial domain registration at each relevant step within the log-polar FFT algorithm. In addition, we explore the benefits of normalized gradient correlation in performing the coarse log-polar FFT registration. The use of normalized gradient correlation, as opposed to phase-only correlation, has recently been proposed for improving the log-polar FFT method in terms

  8. Plane wave imaging using phased array

    NASA Astrophysics Data System (ADS)

    Volker, Arno

    2014-02-01

    Phased arrays are often used for rapid inspections. Phased arrays can be used to synthesize different wave fronts. For imaging, focused wave fronts are frequently used. In order to build an image, the phased array has to be fired multiple times at the same location. Alternatively, different data acquisition configurations can be designed in combination with an imaging algorithm. The objective of this paper is to use the minimal amount of data required to construct an image. If a plane wave is synthesized, the region of interest is illuminated completely. For plane wave synthesis, all elements in the phase array are fired. This ensures a good signal to noise ratio. Imaging can be performed efficiently with a mapping algorithm in the wavenumber domain. The algorithm involves only two Fourier transforms and can therefore be extremely fast. The obtained resolution is comparable to conventional imaging algorithms. This work investigates the potential and limitations of this mapping algorithm on simulated data. With this approach, frame rates of more than 1 kHz can be achieved.

  9. Measured performance of an airborne Fourier-transform hyperspectral imager

    NASA Astrophysics Data System (ADS)

    Otten, Leonard John, III; Meigs, Andrew D.; Sellar, R. Glenn; Rafert, Bruce

    1996-11-01

    A new hyperspectral imager has recently been developed by Kestrel Corporation for use in light aircraft platforms. The instrument provides 256 spectral channels with 87 cm-1 spectral bandwidth over the 450 nm to 1000 nm portion of the spectrum. Operated as a pushbroom imager, the FTVHSI has been shown to have a IFOV of 0.75 mrad, and a FOV of 0.23 rad. The sensor includes an internal spectral/radiometric calibration source, a self contained spectrally resolved downwelling sensor, and complete line of sight and GPS positioning information. The instrument is now operating from a Cessna TU-206 single engine aircraft.

  10. Phase microscope imaging in phase space

    NASA Astrophysics Data System (ADS)

    Sheppard, Colin J. R.; Mehta, Shalin B.

    2016-03-01

    Imaging in a bright field or phase contrast microscope is partially coherent. We have found that the image can be conveniently considered and modeled in terms of the Wigner distribution function (WDF) of the object transmission. The WDF of the object has a simple physical interpretation for the case of a slowly varying object. Basically, the image intensity is the spatial marginal of the spatial convolution of the object WDF with the phase space imager kernel (PSIkernel), a rotated version of the transmission cross-coefficient. The PSI-kernel can be regarded as a partially-coherent generalization of the point spread function. This approach can be extended to consider the partial coherence of the image itself. In particular, we can consider the mutual intensity, WDF or ambiguity function of the image. It is important to note that the spatial convolution of the object WDF with the PSI-kernel is not a WDF, and not the WDF of the image. The phase space representations of the image have relevance to phase reconstruction methods such as phase space tomography, or the transport of intensity equation approach, and to the three-dimensional image properties.

  11. Improvement of quality of optical reconstruction of digital Fourier holograms displayed on phase-only SLM by its digital preprocessing

    NASA Astrophysics Data System (ADS)

    Cheremkhin, Pavel A.; Evtikhiev, Nikolay N.; Krasnov, Vitaly V.; Porshneva, Liudmila A.; Rodin, Vladislav G.; Starikov, Sergey N.

    2014-10-01

    Digital holography is popular tool for research and practical applications in various fields of science and technology. Most widespread method of optical reconstruction implements digital hologram display on spatial light modulators (SLM). Optical reconstruction of digital holograms is used for remote display of static and dynamic 2D and 3D scenes, in optical information processing, metrology, interferometry, microscopy, etc. Holograms recorded with digital cameras are amplitude type. Therefore quality of its optical reconstruction with phase SLM is worse compared to amplitude SLM. However application of phase SLM can provide higher diffraction efficiency. To improve quality of optical reconstruction with phase SLM, method of SLM phase modulation depth reduction at digital hologram display is proposed. To our knowledge, this method was applied only in analog holography. Also two other methods of quality improvement are considered: hologram to kinoform conversion and holograms multiplexing. Numerical experiments on modelling of digital Fourier holograms recording and their optical reconstruction by phase SLM were performed. Method of SLM phase modulation depth reduction at digital holograms display was proposed and tested. SLM phase modulation depth ranged from 0 to 2π. Quantity of hologram phase levels equal to 256 corresponds to 2π phase modulation depth. To keep SLM settings while changing phase modulation depth hologram phase distribution was renormalized instead. Dependencies of reconstruction quality on hologram phase modulation depth were obtained. Best quality is achieved at 0.27π÷0.31π phase modulation depth. To reduce speckle noise, hologram multiplexing can be applied. Modeling of multiplex holograms optical reconstruction was conducted. Speckle noise reduction was achieved. For improvement of digital hologram optical reconstruction quality and diffraction efficiency hologram to kinoform conversion can be used. Firstly numerically reconstructed image

  12. A Super-Imaging Fourier Transform Spectrometer for the VLT

    NASA Astrophysics Data System (ADS)

    Maillard, Jean-Pierre; Bacon, Roland

    A cryogenic, near-infrared (Hawaii2 domain) imaging FTS is proposed for a Nasmyth focus of an 8-m VLT, as a unique solution for providing integral field spectroscopy at high spectral resolution (R = 50,000 at 2 μm) over a large field, up to 3 x 3 arcmin FOV. Another mode is proposed behind AO with a smaller field but preserving high spectral resolution.

  13. Fourier magnetic imaging with nanoscale resolution and compressed sensing speed-up using electronic spins in diamond

    NASA Astrophysics Data System (ADS)

    Arai, K.; Belthangady, C.; Zhang, H.; Bar-Gill, N.; Devience, S. J.; Cappellaro, P.; Yacoby, A.; Walsworth, R. L.

    2015-10-01

    Optically detected magnetic resonance using nitrogen-vacancy (NV) colour centres in diamond is a leading modality for nanoscale magnetic field imaging, as it provides single electron spin sensitivity, three-dimensional resolution better than 1 nm (ref. 5) and applicability to a wide range of physical and biological samples under ambient conditions. To date, however, NV-diamond magnetic imaging has been performed using ‘real-space’ techniques, which are either limited by optical diffraction to ˜250 nm resolution or require slow, point-by-point scanning for nanoscale resolution, for example, using an atomic force microscope, magnetic tip, or super-resolution optical imaging. Here, we introduce an alternative technique of Fourier magnetic imaging using NV-diamond. In analogy with conventional magnetic resonance imaging (MRI), we employ pulsed magnetic field gradients to phase-encode spatial information on NV electronic spins in wavenumber or ‘k-space’ followed by a fast Fourier transform to yield real-space images with nanoscale resolution, wide field of view and compressed sensing speed-up.

  14. Fourier spectrum and phases for a signal in a finite interval

    NASA Astrophysics Data System (ADS)

    Belmont, Gérard; Dorville, Nicolas; Sahraoui, Fouad; Rezeau, Laurence

    2015-04-01

    When investigating the physics of turbulent media, as the solar wind or the magnetosheath plasmas, obtaining accurate Fourier spectra and phases is a crucial issue. For the different fields, the spectra allow in particular verifying whether one or several power laws can be determined in different frequency ranges. Accurate phases are necessary as well for all the "higher order statistics" studies in Fourier space, the coherence ones and for the polarization studies. Unfortunately, the Fourier analysis is not unique for a finite time interval of duration T: the frequencies lower than 1/T have a large influence on the result, which can hardly be controlled. This unknown "trend" has in particular the effect of introducing jumps at the edges of the interval, for the function under study itself, as well as for all its derivatives. The Fourier transform obtained directly by FFT (Fast Fourier Transform) is generally much influenced by these effects and cannot be used without care for wide band signals. The interference between the jumps and the signal itself provide in particular characteristic "hairs" on the spectrum, which are clearly visible on it with df≈1/T. These fluctuations are usually eliminated by smoothing the spectrum, or by averaging several successive spectra. Nevertheless, such treatments introduce uncertainties on the spectral laws (the phases being anyway completely lost). Windowing is also a method currently used to suppress or decrease the jumps, but it modifies the signal (the windowed trend has a spectrum, which is convolved with the searched one) and the phases are generally much altered. Here, we present a new data processing technique to circumvent these difficulties. It takes advantage of the fact that the signal is generally not unknown out of the interval under study: the complete signal is tapered to this interval of interest thanks to a new window function, sharp but not square. This window function is chosen such that the spectrum obtained

  15. Spectral multiplexing and coherent-state decomposition in Fourier ptychographic imaging

    PubMed Central

    Dong, Siyuan; Shiradkar, Radhika; Nanda, Pariksheet; Zheng, Guoan

    2014-01-01

    Information multiplexing is important for biomedical imaging and chemical sensing. In this paper, we report a microscopy imaging technique, termed state-multiplexed Fourier ptychography (FP), for information multiplexing and coherent-state decomposition. Similar to a typical Fourier ptychographic setting, we use an array of light sources to illuminate the sample from different incident angles and acquire corresponding low-resolution images using a monochromatic camera. In the reported technique, however, multiple light sources are lit up simultaneously for information multiplexing, and the acquired images thus represent incoherent summations of the sample transmission profiles corresponding to different coherent states. We show that, by using the state-multiplexed FP recovery routine, we can decompose the incoherent mixture of the FP acquisitions to recover a high-resolution sample image. We also show that, color-multiplexed imaging can be performed by simultaneously turning on R/G/B LEDs for data acquisition. The reported technique may provide a solution for handling the partially coherent effect of light sources used in Fourier ptychographic imaging platforms. It can also be used to replace spectral filter, gratings or other optical components for spectral multiplexing and demultiplexing. With the availability of cost-effective broadband LEDs, the reported technique may open up exciting opportunities for computational multispectral imaging. PMID:24940538

  16. Full-Stokes Fourier-transform imaging spectropolarimeter using a time-division polarization modulator.

    PubMed

    Meng, Xin; Li, Jianxin; Song, Huaqing; Zhu, Rihong

    2014-08-20

    A Fourier-transform imaging spectropolarimeter is presented and demonstrated. It is composed of a time-division polarization modulator and a high radiation throughput Fourier-transform spectrometer. Four polarization states of the input light are generated by rotating the retarder. Then, the polarized light enters the Fourier-transform spectrometer to create four sets of interferometric images, where we can recover four polarization spectra and calculate the full-Stokes vector in various wavenumber frequency. The method has good performance to resist instrument noise and has the advantage of high spatial resolution. The laboratory setup is described and the noise source is analyzed. Two proven experiments have been carried out in visible light. PMID:25321096

  17. Simple technique of Fourier-transform holographic microscope with compensation of phase aberration

    NASA Astrophysics Data System (ADS)

    Grishin, Oleg V.; Fedosov, Ivan V.; Tuchin, Valery V.

    2016-04-01

    In this paper, we present a novel simple technique of Fourier-transform holographic microscopy (FTHM). Simplicity of the scheme, possibility to use a small image sensor and provide compensation of aberration, enable one to construct inexpensive holographic microscopes. We experimentally compare FTHM with in-line holographic microscopy. In this paper, we present experimental scheme of FTHM, description of used algorithms and experimental results for an amplitude test object and biological samples (blood smears).

  18. The geometric phase analysis method based on the local high resolution discrete Fourier transform for deformation measurement

    NASA Astrophysics Data System (ADS)

    Dai, Xianglu; Xie, Huimin; Wang, Huaixi; Li, Chuanwei; Liu, Zhanwei; Wu, Lifu

    2014-02-01

    The geometric phase analysis (GPA) method based on the local high resolution discrete Fourier transform (LHR-DFT) for deformation measurement, defined as LHR-DFT GPA, is proposed to improve the measurement accuracy. In the general GPA method, the fundamental frequency of the image plays a crucial role. However, the fast Fourier transform, which is generally employed in the general GPA method, could make it difficult to locate the fundamental frequency accurately when the fundamental frequency is not located at an integer pixel position in the Fourier spectrum. This study focuses on this issue and presents a LHR-DFT algorithm that can locate the fundamental frequency with sub-pixel precision in a specific frequency region for the GPA method. An error analysis is offered and simulation is conducted to verify the effectiveness of the proposed method; both results show that the LHR-DFT algorithm can accurately locate the fundamental frequency and improve the measurement accuracy of the GPA method. Furthermore, typical tensile and bending tests are carried out and the experimental results verify the effectiveness of the proposed method.

  19. Imaging by Zernike phase plates in the TEM.

    PubMed

    Edgcombe, C J

    2016-08-01

    The images produced from simple phase objects, lenses and Zernike phase plates when all have rotational symmetry can be calculated by 1D Fourier-Bessel transforms. For a simple disc object producing a uniform phase shift over its diameter, the resulting image can be defined for any size of object phase change. The monotonic range of intensity variation with object phase is found to depend strongly on the phase change introduced by the phase plate; this property of the system is not well predicted by the weak phase approximation. The effect of spreading the phase transition at the plate over a range of radius is beneficial if the plate phase change is sufficiently small. Weak-phase calculations for a phase distribution more typical of a spherical object are also shown. PMID:27183505

  20. Instrumental phase-based method for Fourier transform spectrometer measurements processing

    SciTech Connect

    Saggin, Bortolino; Scaccabarozzi, Diego; Tarabini, Marco

    2011-04-20

    Phase correction is a critical procedure for most space-borne Fourier transform spectrometers (FTSs) whose accuracy (owing to often poor signal-to-noise ratio, SNR) can be jeopardized from many uncontrollable environmental conditions. This work considers the phase correction in an FTS working under significant temperature change during the measurement and affected by mechanical disturbances. The implemented method is based on the identification of an instrumental phase that is dependent on the interferometer temperature and on the extraction of a linear phase component through a least-squares approach. The use of an instrumental phase parameterized with the interferometer temperature eases the determination of the linear phase that can be extracted using only a narrow spectral region selected to be immune from disturbances. The procedure, in this way, is made robust against phase errors arising from instrumental effects, a key feature to reduce the disturbances through spectra averaging. The method was specifically developed for the Mars IR Mapper spectrometer, that was designed for operation onboard a rover on the Mars surface; the validation was performed using ground and in-flight measurements of the Fourier transform IR spectrometer planetary Fourier spectrometer, onboard the MarsExpress mission. The symmetrization has been exploited also for the spectra calibration, highlighting the issues deriving from the cases of relevant beamsplitter emission. The applicability of this procedure to other instruments is conditional to the presence in the spectra of at least one spectral region with a large SNR along with a negligible (or known) beamsplitter emission. For the PFS instrument, the processing of data with relevant beamsplitter emission has been performed exploiting the absorption carbon dioxide bands present in Martian spectra.

  1. Instrumental phase-based method for Fourier transform spectrometer measurements processing.

    PubMed

    Saggin, Bortolino; Scaccabarozzi, Diego; Tarabini, Marco

    2011-04-20

    Phase correction is a critical procedure for most space-borne Fourier transform spectrometers (FTSs) whose accuracy (owing to often poor signal-to-noise ratio, SNR) can be jeopardized from many uncontrollable environmental conditions. This work considers the phase correction in an FTS working under significant temperature change during the measurement and affected by mechanical disturbances. The implemented method is based on the identification of an instrumental phase that is dependent on the interferometer temperature and on the extraction of a linear phase component through a least-squares approach. The use of an instrumental phase parameterized with the interferometer temperature eases the determination of the linear phase that can be extracted using only a narrow spectral region selected to be immune from disturbances. The procedure, in this way, is made robust against phase errors arising from instrumental effects, a key feature to reduce the disturbances through spectra averaging. The method was specifically developed for the Mars IR Mapper spectrometer, that was designed for operation onboard a rover on the Mars surface; the validation was performed using ground and in-flight measurements of the Fourier transform IR spectrometer planetary Fourier spectrometer, onboard the MarsExpress mission. The symmetrization has been exploited also for the spectra calibration, highlighting the issues deriving from the cases of relevant beamsplitter emission. The applicability of this procedure to other instruments is conditional to the presence in the spectra of at least one spectral region with a large SNR along with a negligible (or known) beamsplitter emission. For the PFS instrument, the processing of data with relevant beamsplitter emission has been performed exploiting the absorption carbon dioxide bands present in Martian spectra. PMID:21509063

  2. Image deconvolution of extended objects - A comparison of the inverse Fourier and the Lucy techniques

    NASA Astrophysics Data System (ADS)

    Cunningham, C. C.; Anthony, D.

    1993-04-01

    Two methods of deconvolution, the inverse Fourier method and the Lucy iterative technique, are compared with respect to their applicability to restoration of Hubble Space Telescope images of Saturn. The two techniques are found to provide nearly identical results in the case of cloud morphologies and comparable results for fluxes from Saturn's bright disk.

  3. Gallery of Datacubes Obtained with the Livermore Imaging Fourier Transform Spectrometer

    SciTech Connect

    Wurtz, R; Wishnow, E H; Blais-Ouellette, S; Cook, K H; Holden, B P; Carr, D J; Stubbs, C W

    2002-09-12

    We have acquired spatial-spectral datacubes of astronomical objects using the Livermore visible-band imaging Fourier transform spectrometer at Apache Point Observatory. Each raw datacube contains hundreds of thousands of spectral interferograms. We present in-progress demonstrations of these observations.

  4. Gaseous effluent monitoring and identification using an imaging Fourier transform spectrometer

    SciTech Connect

    Carter, M.R.; Bennett, C.L.; Fields, D.J.; Hernandez, J.

    1993-10-01

    We are developing an imaging Fourier transform spectrometer for chemical effluent monitoring. The system consists of a 2-D infrared imaging array in the focal plane of a Michelson interferometer. Individual images are coordinated with the positioning of a moving mirror in the Michelson interferometer. A three dimensional data cube with two spatial dimensions and one interferogram dimension is then Fourier transformed to produce a hyperspectral data cube with one spectral dimension and two spatial dimensions. The spectral range of the instrument is determined by the choice of optical components and the spectral range of the focal plane array. Measurements in the near UV, visible, near IR, and mid-IR ranges are possible with the existing instrument. Gaseous effluent monitoring and identification measurements will be primarily in the ``fingerprint`` region of the spectrum, ({lambda} = 8 to 12 {mu}m). Initial measurements of effluent using this imaging interferometer in the mid-IR will be presented.

  5. FPGA-based phase control of acousto-optic modulator Fourier synthesis system through gradient descent phase-locking algorithm.

    PubMed

    Underwood, Kenneth J; Jones, Andrew M; Gopinath, Juliet T

    2015-06-20

    We present a new application of the stochastic parallel gradient descent (SPGD) algorithm to fast active phase control in a Fourier synthesis system. Pulses (4.9 ns) with an 80 MHz repetition rate are generated by feedback from a single phase-sensitive metric. Phase control is applied via fast current modulation of a tapered amplifier using an SPGD algorithm realized on a field-programmable gate array (FPGA). The waveforms are maintained by constant active feedback from the FPGA. We also discuss the extension of this technique to many more semiconductor laser emitters in a diode laser array. PMID:26193004

  6. Image Stability Requirements For a Geostationary Imaging Fourier Transform Spectrometer (GIFTS)

    NASA Technical Reports Server (NTRS)

    Bingham, G. E.; Cantwell, G.; Robinson, R. C.; Revercomb, H. E.; Smith, W. L.

    2001-01-01

    A Geostationary Imaging Fourier Transform Spectrometer (GIFTS) has been selected for the NASA New Millennium Program (NMP) Earth Observing-3 (EO-3) mission. Our paper will discuss one of the key GIFTS measurement requirements, Field of View (FOV) stability, and its impact on required system performance. The GIFTS NMP mission is designed to demonstrate new and emerging sensor and data processing technologies with the goal of making revolutionary improvements in meteorological observational capability and forecasting accuracy. The GIFTS payload is a versatile imaging FTS with programmable spectral resolution and spatial scene selection that allows radiometric accuracy and atmospheric sounding precision to be traded in near real time for area coverage. The GIFTS sensor combines high sensitivity with a massively parallel spatial data collection scheme to allow high spatial resolution measurement of the Earth's atmosphere and rapid broad area coverage. An objective of the GIFTS mission is to demonstrate the advantages of high spatial resolution (4 km ground sample distance - gsd) on temperature and water vapor retrieval by allowing sampling in broken cloud regions. This small gsd, combined with the relatively long scan time required (approximately 10 s) to collect high resolution spectra from geostationary (GEO) orbit, may require extremely good pointing control. This paper discusses the analysis of this requirement.

  7. Field-of-view analysis of a polarization interference Fourier transform imaging spectrometer.

    PubMed

    DeHoog, Edward; Xia, Xiaowei; Parfenov, Alexander; Shih, Min-Yi

    2011-09-20

    The Fourier transform imaging spectrometer (FTIS) is an important tool for the measurement of spectral information in a scene. Advances in electro-optic crystal systems have led to the advent of the FTIS based on polarization interference filters. The operation of these devices as spectrometers has been well characterized, but the imaging capabilities have yet to be thoroughly explored. We explore the field-of-view limitations that occur when using this particular type of FTIS. PMID:21947057

  8. Precise spectrum reconstruction of the Fourier transforms imaging spectrometer based on polarization beam splitters.

    PubMed

    Ren, Wenyi; Zhang, Chunmin; Jia, Chenling; Mu, Tingkui; Li, Qiwei; Zhang, Lin

    2013-04-15

    A method was proposed to precisely reconstruct the spectrum from the interferogram taken by the Fourier transform imaging spectrometer (FTIS) based on the polarization beam splitters. Taken the FTISs based on the Savart polariscope and Wollaston prism as examples, the distorted spectrums were corrected via the proposed method effectively. The feasibility of the method was verified via simulation. The distorted spectrum, recovered from the interferogram taken by the polarization imaging spectrometer developed by us, was corrected. PMID:23595463

  9. Two-dimensional Kerr-Fourier imaging of translucent phantoms in thick turbid media

    NASA Astrophysics Data System (ADS)

    Liang, X.; Wang, L.; Ho, P. P.; Alfano, R. R.

    1995-06-01

    Translucent scattering phantoms hidden inside a 5.5-cm-thick Intralipid solution were imaged as a function of phantom scattering coefficients by the use of a picosecond time-and space-gated Kerr-Fourier imaging system. A 2-mm-thick translucent phantom with a 0.1% concentration (scattering coefficient) difference from the 55-mm-thick surrounding scattering host can be distinguished at a signal level of approximately 10-10 of the incidence illumination intensity.

  10. Fourier spectrum and phases for a signal in a finite interval

    NASA Astrophysics Data System (ADS)

    Dorville, N.; Belmont, G.; Sahraoui, F.; Rezeau, L.

    2014-12-01

    When investigating the physics of turbulent media, as the solar wind or the magnetosheath plasmas, obtaining accurate Fourier spectra and phases is a crucial issue. For the different fields, the spectra allow in particular verifying whether one or several power laws can be determined in different frequency ranges. Accurate phases are necessary as well for all the "higher order statistics" studies in Fourier space, the coherence ones and for the polarization studies. Unfortunately, the Fourier analysis is not unique for a finite time interval of duration T: the frequencies lower than 1/T have a large influence on the result, which can hardly be controlled. This unknown "trend" has in particular the effect of superposing jumps at the edges of the interval, for the function under study itself, as well as for all its derivatives. The Fourier transform obtained directly by FFT (Fast Fourier Transform) is generally much influenced by these effects and cannot be used without care for wide band signals. The interferences between the jumps and the signal itself also provide "hairs" on the spectrum, which are clearly visible fluctuations with df≈1/T. These fluctuations are usually eliminated by smoothing the spectrum, or by averaging several successive spectra. Nevertheless, such smoothing introduces uncertainties on the spectral laws and it makes the phases lost. Windowing is also a method currently used to suppress the jumps, but it modifies the signal (the windowed trend has a spectrum, which is convolved with the searched one) and the phases are also lost to a large extent. Here, we present a new data processing technique to circumvent these difficulties. It takes advantage of the fact that the signal is generally not unknown out of the interval under study: the complete signal is tapered to this interval of interest thanks to a new kind of window, sharp but not square. This kind of window is such that the spectrum obtained can then be deconvolved almost exactly

  11. Optical coherence tomography for imaging of subpleural alveolar structure using a Fourier domain mode locked laser

    NASA Astrophysics Data System (ADS)

    Kirsten, Lars; Walther, Julia; Cimalla, Peter; Gaertner, Maria; Meissner, Sven; Koch, Edmund

    2011-06-01

    Optical coherence tomography (OCT) is a noninvasive imaging modality generating cross sectional and volumetric images of translucent samples. In Fourier domain OCT (FD OCT), the depth profile is calculated by a fast Fourier transformation of the interference spectrum, providing speed and SNR advantage and thus making FD OCT well suitable in biomedical applications. The interference spectrum can be acquired spectrally resolved in spectral domain OCT or time-resolved in optical frequency domain imaging (OFDI). Since OCT images still suffer from motion artifacts, especially under in vivo conditions, increased depth scan rates are required. Therefor, the principle of Fourier domain mode locking has been presented by R. Huber et al. circumventing the speed limitations of conventional FD OCT systems. In FDML lasers, a long single mode fiber is inserted in the ring resonator of the laser resulting in an optical round trip time of a few microseconds. Sweeping the wavelength synchronously by a tunable Fabry-Perot filter can provide wavelength sweeps with repetition rates up to a few MHz used for OFDI. Imaging of subpleural lung tissue for investigation of lung dynamics and its elastic properties is a further biomedical application demanding high-speed OCT imaging techniques. For the first time, the visualization of subpleural alveolar structures of a rabbit lung is presented by the use of an FDML-based OCT system enabling repetition rates of 49.5 kHz and 122.6 kHz, respectively.

  12. Phase shifts in the Fourier spectra of phase gratings and phase grids: an application for one-shot phase-shifting interferometry.

    PubMed

    Toto-Arellano, Noel-Ivan; Rodriguez-Zurita, Gustavo; Meneses-Fabian, Cruz; Vazquez-Castillo, Jose F

    2008-11-10

    Among several techniques, phase shifting interferometry can be implemented with a grating used as a beam divider to attain several interference patterns around each diffraction order. Because each pattern has to show a different phase-shift, a suitable shifting technique must be employed. Phase gratings are attractive to perform the former task due to their higher diffraction efficiencies. But as is very well known, the Fourier coefficients of only-phase gratings are integer order Bessel functions of the first kind. The values of these real-valued functions oscillate around zero, so they can adopt negative values, thereby introducing phase shifts of pi at certain diffraction orders. Because this almost trivial fact seems to have been overlooked in the literature regarding its practical implications, in this communication such phase shifts are stressed in the description of interference patterns obtained with grating interferometers. These patterns are obtained by placing two windows in the object plane of a 4f system with a sinusoidal grating/grid in the Fourier plane. It is shown that the corresponding experimental observations of the fringe modulation, as well as the corresponding phase measurements, are all in agreement with the proposed description. A one-shot phase shifting interferometer is finally proposed taking into account these properties after proper incorporation of modulation of polarization. PMID:19582027

  13. Novel Algorithm for Polar and Spherical Fourier Analysis on Two and Three Dimensional Images

    NASA Astrophysics Data System (ADS)

    Yang, Zhuo; Kamata, Sei-Ichiro

    Polar and Spherical Fourier analysis can be used to extract rotation invariant features for image retrieval and pattern recognition tasks. They are demonstrated to show superiorities comparing with other methods on describing rotation invariant features of two and three dimensional images. Based on mathematical properties of trigonometric functions and associated Legendre polynomials, fast algorithms are proposed for multimedia applications like real time systems and large multimedia databases in order to increase the computation speed. The symmetric points are computed simultaneously. Inspired by relative prime number theory, systematic analysis are given in this paper. Novel algorithm is deduced that provide even faster speed. Proposed method are 9-15% faster than previous work. The experimental results on two and three dimensional images are given to illustrate the effectiveness of the proposed method. Multimedia signal processing applications that need real time polar and spherical Fourier analysis can be benefit from this work.

  14. A compact Fourier transform imaging spectrometer employing a variable gap Fabry-Perot interferometer

    NASA Astrophysics Data System (ADS)

    Lucey, Paul G.; Akagi, Jason; Bingham, Adam L.; Hinrichs, John L.; Knobbe, Edward T.

    2014-05-01

    Fourier transform spectroscopy is a widely employed method for obtaining visible and infrared spectral imagery, with applications ranging from the desktop to remote sensing. Most fielded Fourier transform spectrometers (FTS) employ the Michelson interferometer and measure the spectrum encoded in a time-varying signal imposed by the source spectrum interaction with the interferometer. A second, less widely used form of FTS is the spatial FTS, where the spectrum is encoded in a pattern sampled by a detector array. Recently we described using a Fabry-Perot interferometer, with a deliberately wedged gap geometry and engineered surface reflectivities, to produce an imaging spatial FTS. The Fabry-Perot interferometer can be much lighter and more compact than a conventional interferometer configuration, thereby making them suitable for portable and handheld applications. This approach is suitable for use over many spectral regimes of interest, including visible and infrared regions. Primary efforts to date have focused on development and demonstration of long wave infrared (LWIR) spectral imagers. The LWIR version of the miniaturized Fabry-Perot has been shown to be effective for various applications including spectral imaging-based chemical detection. The compact LWIR spectral imager employs uncooled optics and a microbolometer camera; a handheld version is envisioned for future development. Recent advancements associated with the spatial Fourier Transform imaging spectrometer system are described.

  15. Fourier-based linear systems description of free-breathing pulmonary magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Capaldi, D. P. I.; Svenningsen, S.; Cunningham, I. A.; Parraga, G.

    2015-03-01

    Fourier-decomposition of free-breathing pulmonary magnetic resonance imaging (FDMRI) was recently piloted as a way to provide rapid quantitative pulmonary maps of ventilation and perfusion without the use of exogenous contrast agents. This method exploits fast pulmonary MRI acquisition of free-breathing proton (1H) pulmonary images and non-rigid registration to compensate for changes in position and shape of the thorax associated with breathing. In this way, ventilation imaging using conventional MRI systems can be undertaken but there has been no systematic evaluation of fundamental image quality measurements based on linear systems theory. We investigated the performance of free-breathing pulmonary ventilation imaging using a Fourier-based linear system description of each operation required to generate FDMRI ventilation maps. Twelve subjects with chronic obstructive pulmonary disease (COPD) or bronchiectasis underwent pulmonary function tests and MRI. Non-rigid registration was used to co-register the temporal series of pulmonary images. Pulmonary voxel intensities were aligned along a time axis and discrete Fourier transforms were performed on the periodic signal intensity pattern to generate frequency spectra. We determined the signal-to-noise ratio (SNR) of the FDMRI ventilation maps using a conventional approach (SNRC) and using the Fourier-based description (SNRF). Mean SNR was 4.7 ± 1.3 for subjects with bronchiectasis and 3.4 ± 1.8, for COPD subjects (p>.05). SNRF was significantly different than SNRC (p<.01). SNRF was approximately 50% of SNRC suggesting that the linear system model well-estimates the current approach.

  16. Digital watermarking algorithm research of color images based on quaternion Fourier transform

    NASA Astrophysics Data System (ADS)

    An, Mali; Wang, Weijiang; Zhao, Zhen

    2013-10-01

    A watermarking algorithm of color images based on the quaternion Fourier Transform (QFFT) and improved quantization index algorithm (QIM) is proposed in this paper. The original image is transformed by QFFT, the watermark image is processed by compression and quantization coding, and then the processed watermark image is embedded into the components of the transformed original image. It achieves embedding and blind extraction of the watermark image. The experimental results show that the watermarking algorithm based on the improved QIM algorithm with distortion compensation achieves a good tradeoff between invisibility and robustness, and better robustness for the attacks of Gaussian noises, salt and pepper noises, JPEG compression, cropping, filtering and image enhancement than the traditional QIM algorithm.

  17. Accurate determination of the diffusion coefficient of proteins by Fourier analysis with whole column imaging detection.

    PubMed

    Zarabadi, Atefeh S; Pawliszyn, Janusz

    2015-02-17

    Analysis in the frequency domain is considered a powerful tool to elicit precise information from spectroscopic signals. In this study, the Fourier transformation technique is employed to determine the diffusion coefficient (D) of a number of proteins in the frequency domain. Analytical approaches are investigated for determination of D from both experimental and data treatment viewpoints. The diffusion process is modeled to calculate diffusion coefficients based on the Fourier transformation solution to Fick's law equation, and its results are compared to time domain results. The simulations characterize optimum spatial and temporal conditions and demonstrate the noise tolerance of the method. The proposed model is validated by its application for the electropherograms from the diffusion path of a set of proteins. Real-time dynamic scanning is conducted to monitor dispersion by employing whole column imaging detection technology in combination with capillary isoelectric focusing (CIEF) and the imaging plug flow (iPF) experiment. These experimental techniques provide different peak shapes, which are utilized to demonstrate the Fourier transformation ability in extracting diffusion coefficients out of irregular shape signals. Experimental results confirmed that the Fourier transformation procedure substantially enhanced the accuracy of the determined values compared to those obtained in the time domain. PMID:25607375

  18. Remote Fourier transform-infrared spectral imaging system with hollow-optical fiber bundle.

    PubMed

    Huang, Chenhui; Kino, Saiko; Katagiri, Takashi; Matsuura, Yuji

    2012-10-10

    A spectral imaging system consisting of a Fourier transform-infrared spectrometer, a high-speed infrared camera, and a bundle of hollow-optical fibers transmitting infrared radiation images was constructed. Infrared transmission spectra were obtained by carefully processing multiple interferograms taken by high-speed photography. Infrared spectral images of a variety of samples captured by the system were measured. We successfully detected existence maps of the oil and fat of biological samples by mapping the transmission of specific wavelengths in the spectrum. PMID:23052066

  19. High-SNR static Fourier-transform imaging spectrometer based on differential structure

    NASA Astrophysics Data System (ADS)

    Jin, Peng; Zhu, Shuaishuai; Zhang, Yu; Lin, Jie

    2015-03-01

    Fourier-transform imaging spectrometers are rapidly developed due to their extensive use in industrial monitoring, target detection, and chemical identification. Static Fourier-transform imaging spectrometer (SFIS) containing a birefringent interferometer is one of the most popular directions due to its inherent robustness. However, the SFIS suffers from its low achievable signal-to-noise ratio (SNR) because of the restriction of incident angle. Meanwhile, in applications, the SNR is perhaps the most important factor to determine the usefulness of an instrument. In this paper, we report here a Static Fourier-transform imaging spectrometer based on differential structure (SFIS-DS) in the 400-800nm wavelength range with a high SNR. As in electronic system, the differential structure can double optical efficiency and strongly restrain common mode error in the SFIS-DS. And the differential structure described here is also available for any instruments containing a birefringent interferometer. However, the drawback of the SFIS-DS is that the two images obtained by the two differential channels need precise registration which can be overcome by a sub-pixel spatial registration algorithm. The experimental results indicate the SFIS-DS can increase the SNR by no less than 40%.

  20. Phase-sensitive swept source OCT imaging of the human retina with a VCSEL light source

    PubMed Central

    Choi, WooJhon; Potsaid, Benjamin; Jayaraman, Vijaysekhar; Baumann, Bernhard; Grulkowski, Ireneusz; Liu, Jonathan J.; Lu, Chen D.; Cable, Alex E.; Huang, David; Duker, Jay S.; Fujimoto, James G.

    2013-01-01

    Despite the challenges in achieving high phase stability, Doppler swept source / Fourier domain OCT has advantages of less fringe washout and faster imaging speeds compared to spectral / Fourier domain detection. This manuscript demonstrates swept source OCT with a VCSEL light source at 400kHz sweep rate for phase-sensitive Doppler imaging, measuring pulsatile total retinal blood flow with high sensitivity and phase stability. A robust, simple, and computationally efficient phase stabilization approach for phase-sensitive swept source imaging is also presented. PMID:23381430

  1. Phase Contrast Imaging in Neonates

    PubMed Central

    Zhong, Kai; Ernst, Thomas; Buchthal, Steve; Speck, Oliver; Anderson, Lynn; Chang, Linda

    2011-01-01

    Magnetic resonance phase images can yield superior gray and white matter contrast compared to conventional magnitude images. However, the underlying contrast mechanisms are not yet fully understood. Previous studies have been limited to high field acquisitions in adult volunteers and patients. In this study, phase imaging in the neonatal brain is demonstrated for the first time. Compared to adults, phase differences between gray and white matter are significantly reduced but not inverted in neonates with little myelination and iron deposits in their brains. The remaining phase difference between the neonatal and adult brains may be due to different macromolecule concentration in the unmyelinated brain of the neonates and thus different frequency due to water macromolecule exchange. Additionally, the susceptibility contrast from brain myelination can be separately studied in neonates during brain development. Therefore, magnetic resonance phase imaging is suggested as a novel tool to study neonatal brain development and pathologies in neonates. PMID:21232619

  2. Study on the algorithm of computational ghost imaging based on discrete fourier transform measurement matrix

    NASA Astrophysics Data System (ADS)

    Zhang, Leihong; Liang, Dong; Li, Bei; Kang, Yi; Pan, Zilan; Zhang, Dawei; Gao, Xiumin; Ma, Xiuhua

    2016-07-01

    On the basis of analyzing the cosine light field with determined analytic expression and the pseudo-inverse method, the object is illuminated by a presetting light field with a determined discrete Fourier transform measurement matrix, and the object image is reconstructed by the pseudo-inverse method. The analytic expression of the algorithm of computational ghost imaging based on discrete Fourier transform measurement matrix is deduced theoretically, and compared with the algorithm of compressive computational ghost imaging based on random measurement matrix. The reconstruction process and the reconstruction error are analyzed. On this basis, the simulation is done to verify the theoretical analysis. When the sampling measurement number is similar to the number of object pixel, the rank of discrete Fourier transform matrix is the same as the one of the random measurement matrix, the PSNR of the reconstruction image of FGI algorithm and PGI algorithm are similar, the reconstruction error of the traditional CGI algorithm is lower than that of reconstruction image based on FGI algorithm and PGI algorithm. As the decreasing of the number of sampling measurement, the PSNR of reconstruction image based on FGI algorithm decreases slowly, and the PSNR of reconstruction image based on PGI algorithm and CGI algorithm decreases sharply. The reconstruction time of FGI algorithm is lower than that of other algorithms and is not affected by the number of sampling measurement. The FGI algorithm can effectively filter out the random white noise through a low-pass filter and realize the reconstruction denoising which has a higher denoising capability than that of the CGI algorithm. The FGI algorithm can improve the reconstruction accuracy and the reconstruction speed of computational ghost imaging.

  3. Universal and special keys based on phase-truncated Fourier transform

    NASA Astrophysics Data System (ADS)

    Qin, Wan; Peng, Xiang; Meng, Xiangfeng; Gao, Bruce

    2011-08-01

    We propose a novel optical asymmetric cryptosystem based on a phase-truncated Fourier transform. Two decryption keys independent of each other are generated. They are referred to as universal key and special key, respectively. Each of them can be used for decryption independently in absence of the other. The universal key is applicable to decrypt any ciphertext encoded by the same encryption key, but with poor legibility. On the contrary, the special key is adequate for legible decryption, but only valid for one ciphertext corresponding to the specified plaintext. A set of simulation results show the interesting performance of two types of decryption keys.

  4. Fourier-interpolation superresolution optical fluctuation imaging (fSOFi) (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Enderlein, Joerg; Stein, Simon C.; Huss, Anja; Hähnel, Dirk; Gregor, Ingo

    2016-02-01

    Stochastic Optical Fluctuation Imaging (SOFI) is a superresolution fluorescence microscopy technique which allows to enhance the spatial resolution of an image by evaluating the temporal fluctuations of blinking fluorescent emitters. SOFI is not based on the identification and localization of single molecules such as in the widely used Photoactivation Localization Microsopy (PALM) or Stochastic Optical Reconstruction Microscopy (STORM), but computes a superresolved image via temporal cumulants from a recorded movie. A technical challenge hereby is that, when directly applying the SOFI algorithm to a movie of raw images, the pixel size of the final SOFI image is the same as that of the original images, which becomes problematic when the final SOFI resolution is much smaller than this value. In the past, sophisticated cross-correlation schemes have been used for tackling this problem. Here, we present an alternative, exact, straightforward, and simple solution using an interpolation scheme based on Fourier transforms. We exemplify the method on simulated and experimental data.

  5. Binary encoding method to encrypt Fourier-transformed information of digital images

    NASA Astrophysics Data System (ADS)

    Lin, Kuang Tsan

    2009-02-01

    An encoding method is used to encrypt the Fourier-transformed information of a hidden (covert) digital image in an overt image, while the Fourier-transformed information must be encoded with binary codes. All of the pixels in an overt image are classified into five groups that are called identification, type, tracing, dimension, and information codes. Identification codes are used to judge if the overt image contains codes that belong to the proposed encoding method or not; type codes are used to judge the encoding type; tracing codes are used to judge the encoding trace; dimension codes are used to judge the size of the hidden information; and information codes are used to decode the hidden information. Applying the proposed encoding method is rather easy, and host images corresponding to overt images are not needed for decoding work. The experiment has demonstrated four types of encoding for the proposed encoding method to reconstruct covert images without any distortion or only with a little distortion.

  6. Development of a multi-Fourier-transform interferometer: imaging experiments in millimeter and submillimeter wave bands.

    PubMed

    Ohta, Izumi S; Hattori, Makoto; Matsuo, Hiroshi

    2007-05-20

    We have developed a millimeter and submillimeter Michelson-type bolometric interferometer based on a Martin-Puplett-type Fourier-transform spectrometer named multi-Fourier-transform interferometer (MuFT). We have succeeded in proving that the MuFT is capable of performing broadband imaging observations as theoretically proposed by our previous paper (OHM) [Appl. Opt. 45, 2576 (2006)]. We succeeded in acquiring the mutual coherence signal for an extended source in broadband. By analyzing the obtained mutual coherence signal following the formula proposed in OHM, 2D source images for each wavenumber from 5 cm(-1) (150 GHz) to 35 cm(-1) (1.05 THz) with a wavenumber interval of 0.4 cm(-1) (12 GHz) were successfully extracted. The large dynamic range advantage of the MuFT proposed in OHM was confirmed experimentally. PMID:17514233

  7. Nonnegative image reconstruction from sparse Fourier data: a new deconvolution algorithm

    NASA Astrophysics Data System (ADS)

    Bonettini, S.; Prato, M.

    2010-09-01

    This paper deals with image restoration problems where the data are nonuniform samples of the Fourier transform of the unknown object. We study the inverse problem in both semidiscrete and fully discrete formulations, and our analysis leads to an optimization problem involving the minimization of the data discrepancy under nonnegativity constraints. In particular, we show that such a problem is equivalent to a deconvolution problem in the image space. We propose a practical algorithm, based on the gradient projection method, to compute a regularized solution in the discrete case. The key point in our deconvolution-based approach is that the fast Fourier transform can be employed in the algorithm implementation without the need of preprocessing the data. A numerical experimentation on simulated and real data from the NASA RHESSI mission is also performed.

  8. Effect of the fringe visibility on spectrum SNR of Fourier transform imaging spectrometer

    NASA Astrophysics Data System (ADS)

    Wang, Shuang; Bin, Xiangli; Jing, Juanjuan; Pi, Haifeng

    2013-08-01

    The principle of Fourier transform spectrometer is based on the relationship of Fourier-Transform between interferogram and spectrum. The spectral information of Fourier transform imaging spectrometer (FTIS) reconstructed from raw interferogram by data processing. So there are two kinds of signal-to-noise ratio (SNR) to evaluate instrument performance, one regarding interferogram and the other regarding reconstructed spectrum. Because the raw interferogram is intuitive, the interferogram SNR is studied usually. On the contrary, the spectrum SNR is studied less because of the complexity of the data processing from interferogram to spectrum. The research about the effect of the interference fringe visibility on the spectrum SNR is especially few. This paper present a research work on the relations between the interference fringe visibility and the spectrum SNR. Firstly, the reduction of fringe visibility caused by imaging lens defocus was analyzed. Secondly, the changes of the average spectrum signal and noise caused by the reduction of fringe visibility were calculated. For average spectrum signal, the math deductions are done base on Fourier transform theory. The average noise with different input signal optic-electrons number are simulated. the results show that the average spectrum signal is directly proportional to the fringe visibility, and the effect of fringe visibility on the noise related to signal can be ignorable. Finally, In order to demonstrate above results, the imaging experiment was done with white-light source, using LASIS (Large aperture static imaging spectrometer) based on Sagnac Interferometer. The average spectrum SNRs under different fringe visibility are calculated and analyzed. The experimental results show that: the average spectrum SNRs increase from 42.7 to 62.4.along with the fringe visibility increasing from 0.5051 to 0.687. the reconstructed spectrum SNR is directly proportional to the fringe visibility. As a result, the interferogram

  9. Image Reconstruction from Under sampled Fourier Data Using the Polynomial Annihilation Transform

    DOE PAGESBeta

    Archibald, Richard K.; Gelb, Anne; Platte, Rodrigo

    2015-09-09

    Fourier samples are collected in a variety of applications including magnetic resonance imaging and synthetic aperture radar. The data are typically under-sampled and noisy. In recent years, l1 regularization has received considerable attention in designing image reconstruction algorithms from under-sampled and noisy Fourier data. The underlying image is assumed to have some sparsity features, that is, some measurable features of the image have sparse representation. The reconstruction algorithm is typically designed to solve a convex optimization problem, which consists of a fidelity term penalized by one or more l1 regularization terms. The Split Bregman Algorithm provides a fast explicit solutionmore » for the case when TV is used for the l1l1 regularization terms. Due to its numerical efficiency, it has been widely adopted for a variety of applications. A well known drawback in using TV as an l1 regularization term is that the reconstructed image will tend to default to a piecewise constant image. This issue has been addressed in several ways. Recently, the polynomial annihilation edge detection method was used to generate a higher order sparsifying transform, and was coined the “polynomial annihilation (PA) transform.” This paper adapts the Split Bregman Algorithm for the case when the PA transform is used as the l1 regularization term. In so doing, we achieve a more accurate image reconstruction method from under-sampled and noisy Fourier data. Our new method compares favorably to the TV Split Bregman Algorithm, as well as to the popular TGV combined with shearlet approach.« less

  10. Image Reconstruction from Under sampled Fourier Data Using the Polynomial Annihilation Transform

    SciTech Connect

    Archibald, Richard K.; Gelb, Anne; Platte, Rodrigo

    2015-09-09

    Fourier samples are collected in a variety of applications including magnetic resonance imaging and synthetic aperture radar. The data are typically under-sampled and noisy. In recent years, l1 regularization has received considerable attention in designing image reconstruction algorithms from under-sampled and noisy Fourier data. The underlying image is assumed to have some sparsity features, that is, some measurable features of the image have sparse representation. The reconstruction algorithm is typically designed to solve a convex optimization problem, which consists of a fidelity term penalized by one or more l1 regularization terms. The Split Bregman Algorithm provides a fast explicit solution for the case when TV is used for the l1l1 regularization terms. Due to its numerical efficiency, it has been widely adopted for a variety of applications. A well known drawback in using TV as an l1 regularization term is that the reconstructed image will tend to default to a piecewise constant image. This issue has been addressed in several ways. Recently, the polynomial annihilation edge detection method was used to generate a higher order sparsifying transform, and was coined the “polynomial annihilation (PA) transform.” This paper adapts the Split Bregman Algorithm for the case when the PA transform is used as the l1 regularization term. In so doing, we achieve a more accurate image reconstruction method from under-sampled and noisy Fourier data. Our new method compares favorably to the TV Split Bregman Algorithm, as well as to the popular TGV combined with shearlet approach.

  11. A non-linear preprocessing for opto-digital image encryption using multiple-parameter discrete fractional Fourier transform

    NASA Astrophysics Data System (ADS)

    Azoug, Seif Eddine; Bouguezel, Saad

    2016-01-01

    In this paper, a novel opto-digital image encryption technique is proposed by introducing a new non-linear preprocessing and using the multiple-parameter discrete fractional Fourier transform (MPDFrFT). The non-linear preprocessing is performed digitally on the input image in the spatial domain using a piecewise linear chaotic map (PLCM) coupled with the bitwise exclusive OR (XOR). The resulting image is multiplied by a random phase mask before applying the MPDFrFT to whiten the image. Then, a chaotic permutation is performed on the output of the MPDFrFT using another PLCM different from the one used in the spatial domain. Finally, another MPDFrFT is applied to obtain the encrypted image. The parameters of the PLCMs together with the multiple fractional orders of the MPDFrFTs constitute the secret key for the proposed cryptosystem. Computer simulation results and security analysis are presented to show the robustness of the proposed opto-digital image encryption technique and the great importance of the new non-linear preprocessing introduced to enhance the security of the cryptosystem and overcome the problem of linearity encountered in the existing permutation-based opto-digital image encryption schemes.

  12. Terahertz holography for imaging amplitude and phase objects.

    PubMed

    Hack, Erwin; Zolliker, Peter

    2014-06-30

    A non-monochromatic THz Quantum Cascade Laser and an uncooled micro-bolometer array detector with VGA resolution are used in a beam-splitter free holographic set-up to measure amplitude and phase objects in transmission. Phase maps of the diffraction pattern are retrieved using the Fourier transform carrier fringe method; while a Fresnel-Kirchhoff back propagation algorithm is used to reconstruct the complex object image. A lateral resolution of 280 µm and a relative phase sensitivity of about 0.5 rad are estimated from reconstructed images of a metallic Siemens star and a polypropylene test structure, respectively. Simulations corroborate the experimental results. PMID:24977861

  13. Evaluation of Fourier transform coefficients for the diagnosis of rheumatoid arthritis from diffuse optical tomography images

    NASA Astrophysics Data System (ADS)

    Montejo, Ludguier D.; Jia, Jingfei; Kim, Hyun K.; Hielscher, Andreas H.

    2013-03-01

    We apply the Fourier Transform to absorption and scattering coefficient images of proximal interphalangeal (PIP) joints and evaluate the performance of these coefficients as classifiers using receiver operator characteristic (ROC) curve analysis. We find 25 features that yield a Youden index over 0.7, 3 features that yield a Youden index over 0.8, and 1 feature that yields a Youden index over 0.9 (90.0% sensitivity and 100% specificity). In general, scattering coefficient images yield better one-dimensional classifiers compared to absorption coefficient images. Using features derived from scattering coefficient images we obtain an average Youden index of 0.58 +/- 0.16, and an average Youden index of 0.45 +/- 0.15 when using features from absorption coefficient images.

  14. Depth resolved hyperspectral imaging spectrometer based on structured light illumination and Fourier transform interferometry.

    PubMed

    Choi, Heejin; Wadduwage, Dushan; Matsudaira, Paul T; So, Peter T C

    2014-10-01

    A depth resolved hyperspectral imaging spectrometer can provide depth resolved imaging both in the spatial and the spectral domain. Images acquired through a standard imaging Fourier transform spectrometer do not have the depth-resolution. By post processing the spectral cubes (x, y, λ) obtained through a Sagnac interferometer under uniform illumination and structured illumination, spectrally resolved images with depth resolution can be recovered using structured light illumination algorithms such as the HiLo method. The proposed scheme is validated with in vitro specimens including fluorescent solution and fluorescent beads with known spectra. The system is further demonstrated in quantifying spectra from 3D resolved features in biological specimens. The system has demonstrated depth resolution of 1.8 μm and spectral resolution of 7 nm respectively. PMID:25360367

  15. Depth resolved hyperspectral imaging spectrometer based on structured light illumination and Fourier transform interferometry

    PubMed Central

    Choi, Heejin; Wadduwage, Dushan; Matsudaira, Paul T.; So, Peter T.C.

    2014-01-01

    A depth resolved hyperspectral imaging spectrometer can provide depth resolved imaging both in the spatial and the spectral domain. Images acquired through a standard imaging Fourier transform spectrometer do not have the depth-resolution. By post processing the spectral cubes (x, y, λ) obtained through a Sagnac interferometer under uniform illumination and structured illumination, spectrally resolved images with depth resolution can be recovered using structured light illumination algorithms such as the HiLo method. The proposed scheme is validated with in vitro specimens including fluorescent solution and fluorescent beads with known spectra. The system is further demonstrated in quantifying spectra from 3D resolved features in biological specimens. The system has demonstrated depth resolution of 1.8 μm and spectral resolution of 7 nm respectively. PMID:25360367

  16. Perfusion and ventilation filters for Fourier-decomposition MR lung imaging.

    PubMed

    Wujcicki, Artur; Corteville, Dominique; Materka, Andrzej; Schad, Lothar R

    2015-03-01

    MR imaging without the use of contrast agents has recently been used for creating perfusion and ventilation functional lung images. The technique incorporates frequency- or wavelet-domain filters to separate the MR signal components. This paper presents a new, subject-adaptive algorithm for perfusion and ventilation filters design. The proposed algorithm uses a lung signal model for separation of the signal components in the frequency domain. Non-stationary lung signals are handled by a short time Fourier transform. This method was applied to sets of 192 and 90 co-registered non-contrast MR lung images measured for five healthy subjects at the rate of 3,33 images per second, using different slice thicknesses. In each case, the resulted perfusion and ventilation images showed a smaller amount of mutual information, when compared to those obtained using the known lowpass/highpass filter approach. PMID:25466452

  17. Ultrasonic imaging of an object at the presence of Fourier and non-Fourier transformation in the transmitted through the object acoustic field.

    PubMed

    Andreeva, A; Burova, M; Burov, J

    2007-06-01

    A metal object is computer visualized by registration of the amplitudes of the transmitted through the object short acoustic pulses. The pulses are separated by time, because of the presence of holes and internal compact components in the longitudinal section (structure along the propagation direction of acoustic wave). The acoustic field transmitted through the object is composited from a field presenting Fourier transformation of the hole shape and field, transmitted through the metal components in the longitudinal section of the object. A computer Fourier transformation of the digital data of the amplitude fields transmitted through the object components is performed instead of converging lens. The Fourier series of the object obtained as digital data after the transformation is multiplied with a term, describing the angle distribution of the field on spatial frequencies. The reconstruction of the image of the metal components is performed by reverse transformation, i.e. summing up in all spatial frequencies. 3D visualization of the transmitted through the hole acoustic field determines the hole geometry (circular, square, rectangular). It is shown that at the transmission of a short acoustic pulse through the components with different thicknesses and holes, presenting Fourier and non-Fourier transformation can be registered separately in contrast to the optics. PMID:17395232

  18. High-resolution retinal imaging using adaptive optics and Fourier-domain optical coherence tomography

    DOEpatents

    Olivier, Scot S.; Werner, John S.; Zawadzki, Robert J.; Laut, Sophie P.; Jones, Steven M.

    2010-09-07

    This invention permits retinal images to be acquired at high speed and with unprecedented resolution in three dimensions (4.times.4.times.6 .mu.m). The instrument achieves high lateral resolution by using adaptive optics to correct optical aberrations of the human eye in real time. High axial resolution and high speed are made possible by the use of Fourier-domain optical coherence tomography. Using this system, we have demonstrated the ability to image microscopic blood vessels and the cone photoreceptor mosaic.

  19. Spectral calibration for infrared hyperspectral imaging Fourier transform spectrometer based on absorption peaks

    NASA Astrophysics Data System (ADS)

    Li, YaSheng; Chen, Yan; Liao, Ningfang; Lyu, Hang; He, Shufang; Wan, Lifang

    2015-08-01

    A new calibration method for infrared hyperspectral imaging Fourier transform spectrometer is presented. Two kinds of common materials as Polypropylene (PP) and Polyethylene Terephthalate (PET) films which have special absorption peaks in the infrared band were used in the calibration experiment. As the wavelengths at the sharp absorption peaks of the films are known, an infrared imaging spectrometer can be calibrated on spectra with two or three peaks. With high precision and stability, this method simplifies the calibration work. It is especially appropriate for the measuring condition with a lack of calibration equipment or with inconvenience to calibrate the multiple light sources outdoors.

  20. Automated turbulences jitters correction with a dual ports imaging Fourier-transform spectrometer

    NASA Astrophysics Data System (ADS)

    Prel, Florent; Lantagne, Stéphane; Moreau, Louis; Roy, Claude

    2015-05-01

    When the scene observed by an imaging Fourier-Transform Spectrometer is not stable in amplitude or in position during the time it takes to acquire to spectrum, spectro-radiometric artifacts are generated. These artifacts reduce the radiometric accuracy and may also damage the spectral line shape. The displacements of the scene in the field of view can be due to air turbulence, platform jitters or scene jitters. We describe an automated correction process based on the information provided by the second output port of a two-port imaging FTS. Corrected and uncorrected data will be compared.

  1. Application of short-coherence lensless Fourier-transform digital holography in imaging through diffusive medium

    NASA Astrophysics Data System (ADS)

    Zhang, Yizhuo; Situ, Guohai; Pedrini, Giancarlo; Wang, Dayong; Javidi, Bahram; Osten, Wolfgang

    2013-01-01

    We propose a short-coherence lensless Fourier-transform digital holography for imaging through scattering media. The technique utilizes a low-power cw diode laser with short temporal coherence and enables the selection of the early-arriving photons through a diffusive medium by interfering with a spherical reference beam from the same source. An averaging technique is introduced to extract the weak signal from strong background noise. The proposed technique is verified using both theoretical analysis and experimental demonstration by imaging an object through a 3-mm-thick chicken breast tissue.

  2. Imaging Fourier transform spectroscopy of the boundary layer plume from laser irradiated polymers and carbon materials

    NASA Astrophysics Data System (ADS)

    Acosta, Roberto I.

    The high-energy laser (HEL) lethality community needs for enhanced laser weapons systems requires a better understanding of a wide variety of emerging threats. In order to reduce the dimensionality of laser-materials interaction it is necessary to develop novel predictive capabilities of these events. The objective is to better understand the fundamentals of laser lethality testing by developing empirical models from hyperspectral imagery, enabling a robust library of experiments for vulnerability assessments. Emissive plumes from laser irradiated fiberglass reinforced polymers (FRP), poly(methyl methacrylate) (PMMA) and porous graphite targets were investigated primarily using a mid-wave infrared (MWIR) imaging Fourier transform spectrometer (FTS). Polymer and graphite targets were irradiated with a continuous wave (cw) fiber lasers. Data was acquired with a spectral resolution of 2 cm-1 and spatial resolution as high as 0.52 mm2 per pixel. Strong emission from H2O, CO, CO2 and hydrocarbons were observed in the MWIR between 1900-4000 cm-1. A single-layer radiative transfer model was developed to estimate spatial maps of temperature and column densities of CO and CO2 from the hyperspectral imagery of the boundary layer plume. The spectral model was used to compute the absorption cross sections of CO and CO2, using spectral line parameters from the high temperature extension of the HITRAN. Also, spatial maps of gas-phase temperature and methyl methacrylate (MMA) concentration were developed from laser irradiated carbon black-pigmented PMMA at irradiances of 4-22 W/cm2. Global kinetics interplay between heterogeneous and homogeneous combustion kinetics are shown from experimental observations at high spatial resolutions. Overall the boundary layer profile at steady-state is consistent with CO being mainly produced at the surface by heterogeneous reactions followed by a rapid homogeneous combustion in the boundary layer towards buoyancy.

  3. Sampling reconstruction of N-dimensional bandlimited images after multilinear filtering in fractional Fourier domain

    NASA Astrophysics Data System (ADS)

    Wei, Deyun; Li, Yuanmin

    2013-05-01

    This paper addresses the problem of multidimensional signal reconstruction from generalized samples in fractional Fourier domain including the deterministic case and the stochastic case. The generalized sampling expansion is investigated for the case where the fractional bandlimited input depends on N real variable, i.e., f(t)=f(t1,⋯,tN) and is used as a common input to a parallel bank of m independent N dimensional linear fractional Fourier filters Hα,k(u), k=1,⋯,m. For the deterministic input, the input is assumed to have its N dimensional fractional Fourier transform bandlimited to the frequency rang |ui|≤Ωi, for i=1,⋯,N. If m, the number of fractional Fourier filters, is written as a product of positive integers in the form m=m1m2⋯mN, and if the fractional bandlimited input f(t) is processed by fractional Fourier filter Hα,k(u)resulting m outputs gk(t), then f(t) can be reconstructed in terms of the samples gk(nT), each output being sampled at the identical rates of Ω1 csc α/m1π, Ω2 csc α/m2π,⋯, ΩN csc α/mNπ samples/second in t1,⋯,tN respectively. This contrasts with the rates of Ω1 csc α/π, Ω2 csc α/π,⋯, ΩN csc α/π in t1,⋯,tN needed for reconstruction of the unfiltered input f(t). Input sampling expansions in terms of samples of the output filters are given for both deterministic and stochastic inputs, the generalized sampling expansion for random input having the same form as for the deterministic case but interpreted in the mean-square sense. Our formulation and results are general and include derivative sampling and periodic nonuniform sampling in the fractional Fourier domain for multidimensional signals as special case. Finally, the potensional application of the multidimensional generalized sampling is presented to show the advantage of the theory. Especially, the application of multidimensional generalized sampling in the context of the image scaling about image super-resolution is

  4. Mapping agroecological zones and time lag in vegetation growth by means of Fourier analysis of time series of NDVI images

    NASA Technical Reports Server (NTRS)

    Menenti, M.; Azzali, S.; Verhoef, W.; Van Swol, R.

    1993-01-01

    Examples are presented of applications of a fast Fourier transform algorithm to analyze time series of images of Normalized Difference Vegetation Index values. The results obtained for a case study on Zambia indicated that differences in vegetation development among map units of an existing agroclimatic map were not significant, while reliable differences were observed among the map units obtained using the Fourier analysis.

  5. Fourier synthesis image reconstruction by use of one-dimensional position-sensitive detectors.

    PubMed

    Kotoku, Jun'ichi; Makishima, Kazuo; Okada, Yuu; Negoro, Hitoshi; Terada, Yukikatsu; Kaneda, Hidehiro; Oda, Minoru

    2003-07-10

    An improvement of Fourier synthesis optics for hard x-ray imaging is described, and the basic performance of the new optics is confirmed through numerical simulations. The original concept of the Fourier synthesis imager utilizes nonposition-sensitive hard x-ray detectors coupled to individual bigrid modulation collimators. The improved concept employs a one-dimensional position-sensitive detector (such as a CdTe strip detector) instead of the second grid layer of each bigrid modulation collimator. This improves the imaging performance in several respects over the original design. One performance improvement is a two-fold increase in the average transmission, from 1/4 to 1/2. The second merit is that both the sine and cosine components can be derived from a single grid-detector module, and hence the number of imaging modules can be halved. Furthermore, it provides information along the depth direction simultaneously. This in turn enables a three-dimensional imaging hard x-ray microscope for medical diagnostics, incorporating radioactive tracers. A conceptual design of such a microscope is presented, designed to provide a field of view of 4 mm and a spatial resolution of 400 microm. PMID:12856730

  6. Field experiment performance of the receiver elements for a Fourier telescopy imaging system

    NASA Astrophysics Data System (ADS)

    Mathis, J.; Stapp, J.; Cuellar, E. L.; Cooper, J.; Morris, A.; Fairchild, P.; Hult, Dane; Koski, Katrina; Ramzel, Lee; Thornton, Marcia A.

    2005-08-01

    Fourier telescopy (FT) is an active imaging technique that is a candidate for high resolution imaging systems which can be used to obtain satellite images out to geosynchronous target ranges. Fourier telescopy uses multiple beams that illuminate the target with a fringe pattern that sweeps across it due to a set frequency difference between beams. In this way the target spatial frequency components are encoded in the temporal signal that is reflected from the target. The FT receiver can then be composed of a large area "light bucket" collector, since only the integrated temporal signal is necessary to reconstruct the target image. The GEO Light Imaging National Testbed (GLINT) system was previously designed to obtain satellite images at geosynchronous ranges by using this technique. The "light bucket" receiver was designed use forty heliostats, each having a collection area of ten meters square, and composed of a 16 x 16 grid of two foot square mirrors. The heliostats would redirect the return light from the target onto a large spherical concentrator array composed of hexagonal mirror segments. This concentrator would then focus the return light onto a photomultiplier tube (PMT) detector. The FT Field experiment presented in this paper uses one 10-meter square heliostat and a single PMT, plus a scaled down secondary array to provide the optical elements of the receiver for the FT field experiment. In this paper, we will describe the performance characteristics of the heliostat, secondary, and PMT detector. Performance characteristics include optical wavefront, alignment, and alignment stability of the optical elements. Finally, results will be presented after the receiver was integrated with a transmitter system that provided the modulated FT signal from various targets. Image reconstructions will show that even using low quality "Light bucket" receiver optics and a 1.5 km horizontal path through the atmosphere, the modulated signal can still produce good image

  7. Automated segmentation of intramacular layers in Fourier domain optical coherence tomography structural images from normal subjects

    PubMed Central

    Zhang, Xusheng; Yousefi, Siavash; An, Lin

    2012-01-01

    Abstract. Segmentation of optical coherence tomography (OCT) cross-sectional structural images is important for assisting ophthalmologists in clinical decision making in terms of both diagnosis and treatment. We present an automatic approach for segmenting intramacular layers in Fourier domain optical coherence tomography (FD-OCT) images using a searching strategy based on locally weighted gradient extrema, coupled with an error-removing technique based on statistical error estimation. A two-step denoising preprocess in different directions is also employed to suppress random speckle noise while preserving the layer boundary as intact as possible. The algorithms are tested on the FD-OCT volume images obtained from four normal subjects, which successfully identify the boundaries of seven physiological layers, consistent with the results based on manual determination of macular OCT images. PMID:22559689

  8. In-vivo human corneal nerve imaging using Fourier-domain OCT

    NASA Astrophysics Data System (ADS)

    Shin, Jun Geun; Lee, Byeong Ha; Eom, Tae Joong; Hwang, Ho Sik

    2015-03-01

    We have imaged human corneal nerve bundles by using real-time Fourier-domain OCT (FD-OCT). Corneal nerves contribute to the maintenance of healthy ocular surface owing to their trophic influences on the corneal epithelium. The FD-OCT system was based on a swept laser of a 50 kHz sweeping rate and 1.31 μm center wavelength. At the area including sclera, limbus, and cornea, we could successfully get the in-vivo tomograms of the corneal nerve bundles. The scan range was 5 x 5mm. In this study, the A-scan images in each B-scan were realigned to have a flat air-surface boundary in the final B-scan image. With this effort, we could align corneal nerve bundle in a same depth and get the 3D image showing the branched and threadlike corneal nerve bundles.

  9. Quantitative phase imaging of arthropods

    NASA Astrophysics Data System (ADS)

    Sridharan, Shamira; Katz, Aron; Soto-Adames, Felipe; Popescu, Gabriel

    2015-11-01

    Classification of arthropods is performed by characterization of fine features such as setae and cuticles. An unstained whole arthropod specimen mounted on a slide can be preserved for many decades, but is difficult to study since current methods require sample manipulation or tedious image processing. Spatial light interference microscopy (SLIM) is a quantitative phase imaging (QPI) technique that is an add-on module to a commercial phase contrast microscope. We use SLIM to image a whole organism springtail Ceratophysella denticulata mounted on a slide. This is the first time, to our knowledge, that an entire organism has been imaged using QPI. We also demonstrate the ability of SLIM to image fine structures in addition to providing quantitative data that cannot be obtained by traditional bright field microscopy.

  10. Quantitative phase imaging of arthropods

    PubMed Central

    Sridharan, Shamira; Katz, Aron; Soto-Adames, Felipe; Popescu, Gabriel

    2015-01-01

    Abstract. Classification of arthropods is performed by characterization of fine features such as setae and cuticles. An unstained whole arthropod specimen mounted on a slide can be preserved for many decades, but is difficult to study since current methods require sample manipulation or tedious image processing. Spatial light interference microscopy (SLIM) is a quantitative phase imaging (QPI) technique that is an add-on module to a commercial phase contrast microscope. We use SLIM to image a whole organism springtail Ceratophysella denticulata mounted on a slide. This is the first time, to our knowledge, that an entire organism has been imaged using QPI. We also demonstrate the ability of SLIM to image fine structures in addition to providing quantitative data that cannot be obtained by traditional bright field microscopy. PMID:26334858

  11. Field experiment and image reconstruction using a Fourier telescopy imaging system over a 600-m-long horizontal path.

    PubMed

    Yu, Shu-Hai; Dong, Lei; Liu, Xin-Yue; Lin, Xu-Dong; Megn, Hao-Ran; Zhong, Xing

    2016-08-20

    To confirm the effect of uplink atmospheric turbulence on Fourier telescopy (FT), we designed a system for far-field imaging, utilizing a T-type laser transmitting configuration with commercially available hardware, except for a green imaging laser. The horizontal light transmission distance for both uplink and downlink was ∼300  m. For both the transmitting and received beams, the height upon the ground was below 1 m. The imaging laser's pointing accuracy was ∼9.3  μrad. A novel image reconstruction approach was proposed, yielding significantly improved quality and Strehl ratio of reconstructed images. From the reconstruction result, we observed that the tip/tilt aberration is tolerated by the FT system even for Changchun's atmospheric coherence length parameter (r0) below 3 cm. The resolution of the reconstructed images was ∼0.615  μrad. PMID:27556991

  12. Phase-image-based content-addressable holographic data storage

    NASA Astrophysics Data System (ADS)

    John, Renu; Joseph, Joby; Singh, Kehar

    2004-03-01

    We propose and demonstrate the use of phase images for content-addressable holographic data storage. Use of binary phase-based data pages with 0 and π phase changes, produces uniform spectral distribution at the Fourier plane. The absence of strong DC component at the Fourier plane and more intensity of higher order spatial frequencies facilitate better recording of higher spatial frequencies, and improves the discrimination capability of the content-addressable memory. This improves the results of the associative recall in a holographic memory system, and can give low number of false hits even for small search arguments. The phase-modulated pixels also provide an opportunity of subtraction among data pixels leading to better discrimination between similar data pages.

  13. Utilization of a liquid crystal spatial light modulator in a gray scale detour phase method for Fourier holograms.

    PubMed

    Makey, Ghaith; El-Daher, Moustafa Sayem; Al-Shufi, Kanj

    2012-11-10

    This paper introduces a new modification for the well-known binary detour phase method, which is largely used to represent Fourier holograms; the modification utilizes gray scale level control provided by a liquid crystal spatial light modulator to improve the traditional binary detour phase. Results are shown by both simulation and experiment. PMID:23142903

  14. Remote measurement of highly toxic vapors by scanning imaging Fourier-transform spectrometry

    NASA Astrophysics Data System (ADS)

    Harig, Roland; Rusch, Peter; Dyer, Chris; Jones, Anita; Moseley, Richard; Truscott, Benjamin

    2005-11-01

    In the case of chemical accidents, terrorist attacks, or war, hazardous compounds may be released into the atmosphere. Remote sensing by Fourier-transform infrared spectrometry allows identification and quantification of these hazardous clouds. The output of current standoff detection systems is a yes/no decision by an automatic identification algorithm that analyses the measured spectrum. The interpretation of the measured spectrum by the operator is complicated and thus this task requires an expert. Even if a scanning system is used for surveillance of a large area the operator is dependent on the decision of the algorithm. In contrast to that, imaging systems allow automatic identification but also simple interpretation of the result, the image of the cloud. Therefore, an imaging spectrometer, the scanning infrared gas imaging system (SIGIS) has been developed. The system is based on an interferometer with a single detector element (Bruker OPAG 22) in combination with a telescope and a synchronised scanning mirror. The results of the analyses of the spectra are displayed by an overlay of a false colour image, the "chemical cloud image", on a video image. In this work, the first application of the system as chemical warfare agent identification and imaging system is described. The system, the data analysis method, and results of measurements of chemical warfare agents are presented.

  15. Fourier spatial frequency analysis for image classification: training the training set

    NASA Astrophysics Data System (ADS)

    Johnson, Timothy H.; Lhamo, Yigah; Shi, Lingyan; Alfano, Robert R.; Russell, Stewart

    2016-04-01

    The Directional Fourier Spatial Frequencies (DFSF) of a 2D image can identify similarity in spatial patterns within groups of related images. A Support Vector Machine (SVM) can then be used to classify images if the inter-image variance of the FSF in the training set is bounded. However, if variation in FSF increases with training set size, accuracy may decrease as the size of the training set increases. This calls for a method to identify a set of training images from among the originals that can form a vector basis for the entire class. Applying the Cauchy product method we extract the DFSF spectrum from radiographs of osteoporotic bone, and use it as a matched filter set to eliminate noise and image specific frequencies, and demonstrate that selection of a subset of superclassifiers from within a set of training images improves SVM accuracy. Central to this challenge is that the size of the search space can become computationally prohibitive for all but the smallest training sets. We are investigating methods to reduce the search space to identify an optimal subset of basis training images.

  16. Iterative Image Reconstruction for PROPELLER-MRI using the NonUniform Fast Fourier Transform

    PubMed Central

    Tamhane, Ashish A.; Anastasio, Mark A.; Gui, Minzhi; Arfanakis, Konstantinos

    2013-01-01

    Purpose To investigate an iterative image reconstruction algorithm using the non-uniform fast Fourier transform (NUFFT) for PROPELLER (Periodically Rotated Overlapping parallEL Lines with Enhanced Reconstruction) MRI. Materials and Methods Numerical simulations, as well as experiments on a phantom and a healthy human subject were used to evaluate the performance of the iterative image reconstruction algorithm for PROPELLER, and compare it to that of conventional gridding. The trade-off between spatial resolution, signal to noise ratio, and image artifacts, was investigated for different values of the regularization parameter. The performance of the iterative image reconstruction algorithm in the presence of motion was also evaluated. Results It was demonstrated that, for a certain range of values of the regularization parameter, iterative reconstruction produced images with significantly increased SNR, reduced artifacts, for similar spatial resolution, compared to gridding. Furthermore, the ability to reduce the effects of motion in PROPELLER-MRI was maintained when using the iterative reconstruction approach. Conclusion An iterative image reconstruction technique based on the NUFFT was investigated for PROPELLER MRI. For a certain range of values of the regularization parameter the new reconstruction technique may provide PROPELLER images with improved image quality compared to conventional gridding. PMID:20578028

  17. Fourier domain Pump-Probe Optical Coherence Tomography imaging of melanin.

    PubMed

    Jacob, Desmond; Shelton, Ryan L; Applegate, Brian E

    2010-06-01

    We report the development of a two-color Fourier domain Pump-Probe Optical Coherence Tomography (PPOCT) system. Tissue phantom experiments to characterize the system performance demonstrated imaging depths in excess of 725 microm, nearly comparable to the base Optical Coherence Tomography system. PPOCT A-line rates were also demonstrated in excess of 1 kHz. The physical origin of the PPOCT signal was investigated with a series of experiments which revealed that the signal is a mixture of short and long lifetime component signals. The short lifetime component was attributed to transient absorption while the long lifetime component may be due to a mixture of transient absorption and thermal effects. Ex vivo images of porcine iris demonstrated the potential for imaging melanin in the eye, where cancer of the melanocytes is the most common form of eye cancer in adults. PMID:20588366

  18. An image reconstruction method from Fourier data with uncertainties on the spatial frequencies

    NASA Astrophysics Data System (ADS)

    Cornelio, Anastasia; Bonettini, Silvia; Prato, Marco

    2013-10-01

    In this paper the reconstruction of a two-dimensional image from a nonuniform sampling of its Fourier transform is considered, in the presence of uncertainties on the frequencies corresponding to the measured data. The problem therefore becomes a blind deconvolution, in which the unknowns are both the image to be reconstructed and the exact frequencies. The availability of information on the image and the frequencies allows to reformulate the problem as a constrained minimization of the least squares functional. A regularized solution of this optimization problem is achieved by early stopping an alternating minimization scheme. In particular, a gradient projection method is employed at each step to compute an inexact solution of the minimization subproblems. The resulting algorithm is applied on some numerical examples arising in a real-world astronomical application.

  19. Modeling the viscoplastic micromechanical response of two-phase materials using fast Fourier transforms

    SciTech Connect

    Lebensohn, Ricardo A; Lee, Sukbin; Rollett, Anthony D

    2009-01-01

    A viscoplastic approach using the Fast Fourier Transform (FFT) method for obtaining local mechanical response is utilized to study microstructure-property relationships in composite materials. Specifically, three-dimensional, two-phase digital materials containing isotropically coarsened particles surrounded by a matrix phase, generated through a Kinetic Monte Carlo Potts model for Ostwald ripening, are used as instantiations in order to calculate the stress and strain rate fields under uniaxial tension. The effects of the morphology of the matrix phase, the volume fraction and the contiguity of particles, and the polycrystallinity of matrix phase, on the stress and strain rate fields under uniaxial tension are examined. It is found that the first moments of the stress and strain rate fields have a different dependence on the particle volume fraction and the particle contiguity from their second moments. The average stresses and average strain rates of both phases and of the overall composite have rather simple relationships with the particle volume fraction whereas their standard deviations vary strongly, especially when the particle volume fraction is high, and the contiguity of particles has a noticeable effect on the mechanical response. It is also found that the shape of stress distribution in the BCC hard particle phase evolves as the volume fraction of particles in the composite varies, such that it agrees with the stress field in the BCC polycrystal as the volume of particles approaches unity. Finally, it is observed that the stress and strain rate fields in the microstructures with a polycrystalline matrix are less sensitive to changes in volume fraction and contiguity of particles.

  20. SITELLE: a wide-field imaging Fourier transform spectrometer for the Canada-France-Hawaii Telescope

    NASA Astrophysics Data System (ADS)

    Drissen, L.; Bernier, A.-P.; Rousseau-Nepton, L.; Alarie, A.; Robert, C.; Joncas, G.; Thibault, S.; Grandmont, F.

    2010-07-01

    We describe the concept of a new instrument for the Canada-France-Hawaii telescope (CFHT), SITELLE (Spectromètre Imageur à Transformée de Fourier pour l'Etude en Long et en Large de raies d'Emission), as well as a science case and a technical study of its preliminary design. SITELLE will be an imaging Fourier transform spectrometer capable of obtaining the visible (350 nm - 950 nm) spectrum of every source of light in a field of view of 15 arcminutes, with 100% spatial coverage and a spectral resolution ranging from R = 1 (deep panchromatic image) to R = 104 (for gas dynamics). SITELLE will cover a field of view 100 to 1000 times larger than traditional integral field spectrographs, such as GMOS-IFU on Gemini or the future MUSE on the VLT. It is a legacy from BEAR, the first imaging FTS installed on the CFHT and the direct successor of SpIOMM, a similar instrument attached to the 1.6-m telescope of the Observatoire du Mont-Mégantic in Québec. SITELLE will be used to study the structure and kinematics of HII regions and ejecta around evolved stars in the Milky Way, emission-line stars in clusters, abundances in nearby gas-rich galaxies, and the star formation rate in distant galaxies.

  1. Analysis of the Advantages and Limitations of Stationary Imaging Fourier Transform Spectrometer. Revised

    NASA Technical Reports Server (NTRS)

    Beecken, Brian P.; Kleinman, Randall R.

    2004-01-01

    New developments in infrared sensor technology have potentially made possible a new space-based system which can measure far-infrared radiation at lower costs (mass, power and expense). The Stationary Imaging Fourier Transform Spectrometer (SIFTS) proposed by NASA Langley Research Center, makes use of new detector array technology. A mathematical model which simulates resolution and spectral range relationships has been developed for analyzing the utility of such a radically new approach to spectroscopy. Calculations with this forward model emulate the effects of a detector array on the ability to retrieve accurate spectral features. Initial computations indicate significant attenuation at high wavenumbers.

  2. A compact, high numerical aperture imaging Fourier transform spectrometer and its application

    NASA Astrophysics Data System (ADS)

    Alcock, R. D.; Coupland, J. M.

    2006-11-01

    This paper describes a compact imaging Fourier transform spectrometer with high numerical aperture. In comparison with other optical arrangements in which extended interferometer paths are required for the inclusion of dispersion compensation optics, this technique utilizes a rudimentary cubic beam splitter based Michelson interferometer with minimal optical path so that the numerical aperture of the system is maximized. Mathematical modelling is presented showing that the fringe distortions caused by the dispersion in the cubic beam splitter can be entirely removed without any loss of the spectral information. An illustration of the power of the technique is given classifying between different plant foliage performed using a Fisher discriminant function based optimal linear filtering.

  3. Imaging open-path Fourier transform infrared spectrometer for 3D cloud profiling

    NASA Astrophysics Data System (ADS)

    Rentz Dupuis, Julia; Mansur, David J.; Vaillancourt, Robert; Carlson, David; Evans, Thomas; Schundler, Elizabeth; Todd, Lori; Mottus, Kathleen

    2009-05-01

    OPTRA is developing an imaging open-path Fourier transform infrared (I-OP-FTIR) spectrometer for 3D profiling of chemical and biological agent simulant plumes released into test ranges and chambers. An array of I-OP-FTIR instruments positioned around the perimeter of the test site, in concert with advanced spectroscopic algorithms, enables real time tomographic reconstruction of the plume. The approach is intended as a referee measurement for test ranges and chambers. This Small Business Technology Transfer (STTR) effort combines the instrumentation and spectroscopic capabilities of OPTRA, Inc. with the computed tomographic expertise of the University of North Carolina, Chapel Hill.

  4. Design of spatio-temporally modulated static infrared imaging Fourier transform spectrometer.

    PubMed

    Wang, WenCong; Liang, JingQiu; Liang, ZhongZhu; Lü, JinGuang; Qin, YuXin; Tian, Chao; Wang, WeiBiao

    2014-08-15

    A novel static medium wave infrared (MWIR) imaging Fourier transform spectrometer (IFTS) is conceptually proposed and experimentally demonstrated. In this system, the moving mirror in traditional temporally modulated IFTS is replaced by multi-step micro-mirrors to realize the static design. Compared with the traditional spatially modulated IFTS, they have no slit system and are superior with larger luminous flux and higher energy efficiency. The use of the multi-step micro-mirrors can also make the system compact and light. PMID:25121906

  5. [Spectral reconstruction using algebraic reconstruction technology for Fourier transform computed tomography imaging spectrometer].

    PubMed

    Lin, Yu; Liao, Ning-fang; Luo, Yong-dao; Cui, De-qi; Tan, Bo-neng; Wu, Wen-min

    2010-08-01

    In the present paper, the authors will introduce our research on spectral reconstruction of Fourier transform computed tomography imaging spectrometer by means of the algebraic reconstruction technology. A simulation experiment was carried out to demonstrate the algorithm. The spatial similarities and spectral similarities were evaluated using the normalized correlation coefficient. The performance of ART was evaluated when the quantity of projection is 45. In that case, filter back projection can't work well. Actual spectral slices were reconstructed by using ART in the last part of this paper. PMID:20939312

  6. Standing wave integrated Fourier transform spectrometer for imaging spectrometry in the near infrared

    NASA Astrophysics Data System (ADS)

    Osowiecki, Gaël. D.; Madi, Mohammad; Shorubalko, Ivan; Philipoussis, Irène; Alberti, Edoardo; Scharf, Toralf; Herzig, Hans P.

    2015-09-01

    We show the miniaturization and parallelization of a scanning standing wave spectrometer with a long term goal of creating a compact imaging spectrometer. In our standing wave integrated Fourier transform spectrometer, light is injected with micro-lenses into several optical polymer waveguides. A piezo actuated mirror located at the waveguide end-facet can shift the interferogram to increase its sampling frequency. The spatial distribution of the standing wave intensity inside the waveguide is partially scattered out of the plane by a periodic metallic grating and recorded by a CCD camera. We present spectra acquisition for six adjacent waveguides simultaneously at a wavelength of 632.8 nm.

  7. High-resolution Fourier hologram synthesis from photographic images through computing the light field.

    PubMed

    Chen, Ni; Ren, Zhenbo; Lam, Edmund Y

    2016-03-01

    We present a technique for synthesizing the Fourier hologram of a three-dimensional scene from its light field. The light field captures the volumetric information of an object, and an important advantage is that it does not require coherent illumination, as in conventional holography. In this work, we show how to obtain a high-resolution digital hologram with the light field obtained from a series of photographic images captured along the optical axis. The method is verified both by simulations and experimentally captured light field. PMID:26974639

  8. The quantum state vector in phase space and Gabor's windowed Fourier transform

    NASA Astrophysics Data System (ADS)

    Bracken, A. J.; Watson, P.

    2010-10-01

    Representations of quantum state vectors by complex phase space amplitudes, complementing the description of the density operator by the Wigner function, have been defined by applying the Weyl-Wigner transform to dyadic operators, linear in the state vector and anti-linear in a fixed 'window state vector'. Here aspects of this construction are explored, and a connection is established with Gabor's 'windowed Fourier transform'. The amplitudes that arise for simple quantum states from various choices of windows are presented as illustrations. Generalized Bargmann representations of the state vector appear as special cases, associated with Gaussian windows. For every choice of window, amplitudes lie in a corresponding linear subspace of square-integrable functions on phase space. A generalized Born interpretation of amplitudes is described, with both the Wigner function and a generalized Husimi function appearing as quantities linear in an amplitude and anti-linear in its complex conjugate. Schrödinger's time-dependent and time-independent equations are represented on phase space amplitudes, and their solutions described in simple cases.

  9. Fourier transform interferometer alignment method.

    PubMed

    Goldberg, Kenneth A; Naulleau, Patrick; Bokor, Jeffrey

    2002-08-01

    A rapid and convenient method has been developed to facilitate the alignment of the image-plane components of point-diffraction interferometers, including the phase-shifting point-diffraction interferometer. In real time, the Fourier transform of the detected image is used to calculate a pseudoimage of the electric field in the image plane of the test optic where thecritical alignment o f variousoptical components is performed. Reconstruction of the pseudoimage is similar to off-axis, Fourier transform holography. Intermediate steps in the alignment procedure are described. Fine alignment is aided by the introduction and optimization of a global-contrast parameter that is easily calculated from the Fourier transform. Additional applications include the alignment of image-plane apertures in general optical systems, the rapid identification of patterned image-plane alignment marks, and the probing of important image-plane field properties. PMID:12153074

  10. Slit Function Measurement of An Imaging Spectrograph Using Fourier Transform Techniques

    NASA Technical Reports Server (NTRS)

    Park, Hongwoo; Swimyard, Bruce; Jakobsen, Peter; Moseley, Harvey; Greenhouse, Matthew

    2004-01-01

    Knowledge of a spectrograph slit function is necessary to interpret the unresolved lines in an observed spectrum. A theoretical slit function can be calculated from the sizes of the entrance slit, the detector aperture when it functions as an exit slit, the dispersion characteristic of the disperser, and the point spread function of the spectrograph. A measured slit function is preferred to the theoretical one for the correct interpretation of the spectral data. In a scanning spectrometer with a single exit slit, the slit function is easily measured. In a fixed grating/or disperser spectrograph, illuminating the entrance slit with a near monochromatic light from a pre-monochrmator or a tunable laser and varying the wavelength of the incident light can measure the slit function. Even though the latter technique had been used successfully for the slit function measurements, it had been very laborious and it would be prohibitive to an imaging spectrograph or a multi-object spectrograph that has a large field of view. We explore an alternative technique that is manageable for the measurements. In the proposed technique, the imaging spectrograph is used as a detector of a Fourier transform spectrometer. This method can be applied not only to an IR spectrograph but also has a potential to a visible/UV spectrograph including a wedge filter spectrograph. This technique will require a blackbody source of known temperature and a bolometer to characterize the interferometer part of the Fourier Transform spectrometer. This pa?er will describe the alternative slit function measurement technique using a Fourier transform spectrometer.

  11. The Anatomy of Fourier-Based Correlation Image Velocimetry and Sources of Decorrelating Errors

    NASA Astrophysics Data System (ADS)

    Giarra, Matthew; Vlachos, Pavlos

    2015-11-01

    Particle image velocimetry (PIV) algorithms have recently been applied to photographs captured using a variety of techniques including schlieren, synchrotron x-ray, and microscope imaging. While the characteristics of these types of images differ greatly from those of particle images, virtually no analysis has been done to determine how these differences affect the performance of Fourier-based cross correlation (CC) algorithms. Here, we analyze schlieren, x-ray, and traditional PIV images to show that the signal-to-noise ratios (SNR) of their CCs vary across spectral wavenumbers, and that the assignment of a single SNR to the CC is an oversimplification that obfuscates the underlying source of the decorrelating errors. We will show that the failure of traditional algorithms to distinguish correlated from uncorrelated wavenumbers introduces secondary CC peaks that increase measurement uncertainty by decreasing the correlation peak-height ratio, and can cause the measurement to fail by overtaking the true peak. Finally, we introduce a new algorithm that mitigates these issues and increases measurement accuracy by automatically discriminating correlated wavenumbers with no a priori information about the images' contents.

  12. Application of Fourier Domain OCT Imaging Technology to the Anterior Segment of the Human Eye

    NASA Astrophysics Data System (ADS)

    Wojtkowski, Maciej; Marcos, Susana; Ortiz, Sergio; Grulkowski, Ireneusz

    The anterior segment is the front part of the human eye, which forms the optical system and hence directly impacts vision. Traumatic or pathological changes in the anterior segment may lead to vision loss and, in some cases, even blindness. Since the eighteenth century, optical instrumentation for measuring and imaging the anterior segment of the human eye has been developing along with modern ophthalmology. The application of OCT to the anterior segment imaging is particularly of interest, since this could potentially provide substantial complementary information regarding the large-scale architecture of the cornea and the crystalline lens, or on small portions of tissue imaged with high spatial resolutions comparable to regular microscopy. Especially an introduction of Fourier domain detection in OCT has opened new frontiers in OCT ophthalmic applications. The resultant substantial speed improvement enables rapid image acquisition, helping to reduce artifacts due to patient motion. Thus, it is currently possible to perform high-speed, in vivo, three-dimensional volumetric imaging over large scales within a reasonable time limit and without reducing system sensitivity. This chapter describes the state-of the art OCT technology dedicated to anterior segment imaging and indicates all important parameters which are required for optimization of the performance of OCT instrument.

  13. Renal Graft Fibrosis and Inflammation Quantification by an Automated Fourier-Transform Infrared Imaging Technique.

    PubMed

    Vuiblet, Vincent; Fere, Michael; Gobinet, Cyril; Birembaut, Philippe; Piot, Olivier; Rieu, Philippe

    2016-08-01

    Renal interstitial fibrosis and interstitial active inflammation are the main histologic features of renal allograft biopsy specimens. Fibrosis is currently assessed by semiquantitative subjective analysis, and color image analysis has been developed to improve the reliability and repeatability of this evaluation. However, these techniques fail to distinguish fibrosis from constitutive collagen or active inflammation. We developed an automatic, reproducible Fourier-transform infrared (FTIR) imaging-based technique for simultaneous quantification of fibrosis and inflammation in renal allograft biopsy specimens. We generated and validated a classification model using 49 renal biopsy specimens and subsequently tested the robustness of this classification algorithm on 166 renal grafts. Finally, we explored the clinical relevance of fibrosis quantification using FTIR imaging by comparing results with renal function at 3 months after transplantation (M3) and the variation of renal function between M3 and M12. We showed excellent robustness for fibrosis and inflammation classification, with >90% of renal biopsy specimens adequately classified by FTIR imaging. Finally, fibrosis quantification by FTIR imaging correlated with renal function at M3, and the variation in fibrosis between M3 and M12 correlated well with the variation in renal function over the same period. This study shows that FTIR-based analysis of renal graft biopsy specimens is a reproducible and reliable label-free technique for quantifying fibrosis and active inflammation. This technique seems to be more relevant than digital image analysis and promising for both research studies and routine clinical practice. PMID:26683669

  14. Fourier transform infared spectroscopic imaging for the identification of concealed drug residue particles and fingerprints

    NASA Astrophysics Data System (ADS)

    Ricci, Camilla; Chan, K. L. Andrew; Kazarian, Sergei G.

    2006-09-01

    Conventional FTIR spectroscopy and microscopy has been widely used in forensic science. New opportunities exist to obtain rapid chemical images and to enhance the sensitivity of detection of trace materials using attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopy coupled with a focal-plane array (FPA) detector. In this work, the sensitivity of ATR-FTIR spectroscopic imaging using three different kinds of ATR crystals (Ge coupled with an infrared microscope, ZnSe and diamond) and resulting in three different optical arrangements for the detection of model drug particles is discussed. Model systems of ibuprofen and paracetamol particles having a size below 32 micrometers have been prepared by sieving. The sensitivity level in the three different approaches has been compared and it has been found that both micro and macro-ATR imaging methods have proven to be a promising techniques for the identification of concealed drug particles. To demonstrate the power and applicability of FTIR chemical imaging to forensic research, various examples are discussed. This includes investigation of the changes of chemical nature of latent fingerprint residue under controlled conditions of humidity and temperature studied by ATR-FTIR imaging. This study demonstrates the potential of spectroscopic imaging for visualizing the chemical changes of fingerprints.

  15. Imaging capabilities of weak-phase interferometric devices

    NASA Astrophysics Data System (ADS)

    Lannes, Andre

    1998-07-01

    The first imaging devices of optical interferometry are likely to be of weak phase, typically: a set of three- element arrays, coherent and stable, independently observing the same object. The study of their imaging capabilities essentially addresses the self-calibration problem and its stability. Like in VLBI, the principle of our self- calibration methods consists in preforming a series of alternate phase calibration operations and Fourier synthesis processes. Algebraic graph theory and algebraic number theory prove to be the key topics involved in the phase calibration operation. The latter can often be written in closed form. As expected, the relative expressions explicitly refer to a set of independent closure phases. To illustrate this essential point, we consider the special case of three-element arrays. The corresponding phase calibration formula, which is then particularly simple, provides all the elements for coping with the possible global instabilities. The Fourier synthesis process, which is also involved in the self-calibration cycles, is performed via WIPE, a methodology recently introduced in radio imaging and optical interferometry. The robustness of the image reconstruction process can then be well controlled.

  16. Design of an airborne Fourier transform visible hyperspectral imaging system for light aircraft environmental remote sensing

    NASA Astrophysics Data System (ADS)

    Otten, Leonard John, III; Butler, Eugene W.; Rafert, Bruce; Sellar, R. Glenn

    1995-06-01

    Kestrel Corporation and the Florida Institute of Technology have designed, and are now manufacturing, a Fourier transform visible hyperspectral imager system for use in a single engine light aircraft. The system is composed of a Sagnac-based interferometer optical subsystem, a data management system, and an aircraft attitude and current position sybsystem. The system is designed to have better than 5 nm spectral resolution at 450 nm, operates over the 440 nm to 1150 nm spectral band and has a 2D spatial resolution of 0.8 mrad. An internal calibration source is recorded with every frame of data to retain radiometric accuracy. The entire system fits into a Cessna 206 and uses a conventional downward looking view port located in the baggage compartment. During operation, data are collected at a rate of 15 Mbytes per second and stored direct to a disk array. Data storage has been sized to accommodate 56 minutes of observations. Designed for environmental mapping, this Fourier transform imager has uses in emergency response and military operations.

  17. A dynamically aligned, step scanning mechanism for an imaging Fourier transform spectrometer for astronomy

    NASA Astrophysics Data System (ADS)

    Landry, Jean-Thomas; Grandmont, Frédéric

    2006-06-01

    This paper presents an overview of a step scanning mechanism employing a flexure stage coupled with a dynamically aligned mirror used in the SpIOMM (Spectrometre Imageur de l'Observatoire du Mont Megantic) instrument, an Imaging Fourier Transform Spectrometer (IFTS) concept for ground based telescopes produced in collaboration with ABB and Universite Laval. This instrument can acquire spectra of variable resolutions up to R = λ/Δλ = 10 000 from the near UV to the near IR (350 nm to 900 nm). It is designed to fit the f/8 focus of the Mont Megantic (Quebec, Canada) 1.6m optical telescope. The innovative aspect of this instrument compared to other imaging spectrometers is the spatial coverage. The FOV covers spans of 12 arc minutes in diameter with a pixel sampling of 0.55 arc seconds. Hence spectra of more than a million scene elements are acquired at each measurement.

  18. Tensor representation of color images and fast 2D quaternion discrete Fourier transform

    NASA Astrophysics Data System (ADS)

    Grigoryan, Artyom M.; Agaian, Sos S.

    2015-03-01

    In this paper, a general, efficient, split algorithm to compute the two-dimensional quaternion discrete Fourier transform (2-D QDFT), by using the special partitioning in the frequency domain, is introduced. The partition determines an effective transformation, or color image representation in the form of 1-D quaternion signals which allow for splitting the N × M-point 2-D QDFT into a set of 1-D QDFTs. Comparative estimates revealing the efficiency of the proposed algorithms with respect to the known ones are given. In particular, a proposed method of calculating the 2r × 2r -point 2-D QDFT uses 18N2 less multiplications than the well-known column-row method and method of calculation based on the symplectic decomposition. The proposed algorithm is simple to apply and design, which makes it very practical in color image processing in the frequency domain.

  19. A Novel Gradient Projection Approach for Fourier-Based Image Restoration

    NASA Astrophysics Data System (ADS)

    Bonettini, S.; Prato, M.

    2010-09-01

    This work deals with the ill-posed inverse problem of reconstructing a two-dimensional image of an unknown object starting from sparse and nonuniform measurements of its Fourier Transform. In particular, if we consider a priori information about the target image (e.g., the nonnegativity of the pixels), this inverse problem can be reformulated as a constrained optimization problem, in which the stationary points of the objective function can be viewed as the solutions of a deconvolution problem with a suitable kernel. We propose a fast and effective gradient-projection iterative algorithm to provide regularized solutions of such a deconvolution problem by early stopping the iterations. Preliminary results on a real-world application in astronomy are presented.

  20. A Visible, Spatially-Modulated Imaging Fourier Transform Spectrometer (SMIFTS) for Astronomical Applications

    NASA Astrophysics Data System (ADS)

    Rafert, J. B.; Holbert, E. T.; Rusk, E. T.; Durham, S. E.; Caudill, E.; Keating, D.; Newby, H.

    1992-12-01

    We have constructed several visible, Spatially-Modulated Imaging Fourier Transform Spectrometers (SMIFTS) for spatially resolved spectral imaging in the visible wavelength region based on work by several authors including Yoshihara and Kitade (1967), Okamoto et al. (1984), Barnes (1985) and Smith and Schempp (1991). Our spectrometers require no moving parts, are compact and enjoy a number of advantages over the other spectral data collection technologies. The unique combination of characteristics define an important niche for astronomical, remote sensing, and reconnaissance spectral data acquisition. Our SMIFTS simultaneously acquires hundreds or thousands of spectral bands for hundreds or thousands of spectral channesl. This type of sensor has been called a "hyperspectral" sensor to emphasize the major quantitative difference between this type of sensor and multispectral imagers which collect only a few spectral bands. The SMIFTS consists of input optics (a telescope), a field limiting aperture, a beamsplitter which divides the input beam into two paths, two mirrors which redirect the split beams through the same path, a collimating lens which forms the interferogram of the input aperture on the detector plane, and a cylindrical imaging lens. Thus on the detector array one axis contains spatial information and the other axis contains the spectral information for each point of the spatial axis. The result of this arrangement is that each row of the detector array contains the interferogram of the corresponding point on the aperture or slit. This slit can be fixed upon the target, or the slit can be scanned across the target to build up a second axis of spatial information resulting in a data set with four dimensions: two spatial, one spectral, and one temporal. We present sample data for both astronomical and remote sensing applications taken with the Malabar SMIFTS. Barnes, T.H. "Photodiode Array Fourier Transform Spectrometer with Improved Dynamic Range", Appl

  1. Functional imaging of hemodynamic stimulus response in the rat retina with ultrahigh-speed spectral / Fourier domain OCT

    NASA Astrophysics Data System (ADS)

    Choi, WooJhon; Baumann, Bernhard; Clermont, Allen C.; Feener, Edward P.; Boas, David A.; Fujimoto, James G.

    2013-03-01

    Measuring retinal hemodynamics in response to flicker stimulus is important for investigating pathophysiology in small animal models of diabetic retinopathy, because a reduction in the hyperemic response is thought to be one of the earliest changes in diabetic retinopathy. In this study, we investigated functional imaging of retinal hemodynamics in response to flicker stimulus in the rat retina using an ultrahigh speed spectral / Fourier domain OCT system at 840nm with an axial scan rate of 244kHz. At 244kHz the nominal axial velocity range that could be measured without phase wrapping was +/-37.7mm/s. Pulsatile total retinal arterial blood flow as a function of time was measured using an en face Doppler approach where a 200μm × 200μm area centered at the central retinal artery was repeatedly raster scanned at a volume acquisition rate of 55Hz. Three-dimensional capillary imaging was performed using speckle decorrelation which has minimal angle dependency compared to other angiography techniques based on OCT phase information. During OCT imaging, a flicker stimulus could be applied to the retina synchronously by inserting a dichroic mirror in the imaging interface. An acute transient increase in total retinal blood flow could be detected. At the capillary level, an increase in the degree of speckle decorrelation in capillary OCT angiography images could also be observed, which indicates an increase in the velocity of blood at the capillary level. This method promises to be useful for the investigation of small animal models of ocular diseases.

  2. Optical design of a static LWIR Fourier-transform imaging spectrometer with high throughput

    NASA Astrophysics Data System (ADS)

    Wang, Hai-yang; Fu, Yan-peng; Zheng, Wei-jian; Liao, Ning-fang; Jin, Wei-qi

    2013-08-01

    A LWIR Fourier-transform imaging spectrometer based on the static Michelson interferometer with high throughput is presented. Advantages and disadvantages of some common structures of imaging spectrometer are analyzed. Some selection of optimum configurations for imaging spectrometer is proceeded. The interferogram is acquired over the whole field of the camera while the scene of interest scans the path difference range, and vignetting should be strongly limited while keeping the size of the interferometer as small as possible for manufacturability and practicability reasons. The key point is to put the entrance pupil of the imaging lens inside the interferometer. The design of optical system is proposed. The field of view(FOV) is 10°.The operating wavelength range is from 8 to 12μm, F number is 2 and the working temperature range is -20°C~40°C. Optical system with 100% cold shield efficiency is good adaptability to wide environment temperature change. The spectrometer system has low utilization of solar energy in the infrared band, so to ensure its transmittance, and it is necessary to use a small amount of lenses as possible, so here the method of the active electromechanical athermalisation just uses four lenses in the system. Modulation transfer function (MTF), aberrant and distortion etc of optical system are analyzed. The results show that an excellent performance and image performance are obtained despite the simple structure.

  3. Real-time three-dimensional Fourier-domain optical coherence tomography video image guided microsurgeries

    PubMed Central

    Huang, Yong; Zhang, Kang; Ibrahim, Zuhaib; Cha, Jaepyeong; Lee, W. P. Andrew; Brandacher, Gerald; Gehlbach, Peter L.

    2012-01-01

    Abstract. The authors describe the development of an ultrafast three-dimensional (3D) optical coherence tomography (OCT) imaging system that provides real-time intraoperative video images of the surgical site to assist surgeons during microsurgical procedures. This system is based on a full-range complex conjugate free Fourier-domain OCT (FD-OCT). The system was built in a CPU-GPU heterogeneous computing architecture capable of video OCT image processing. The system displays at a maximum speed of 10  volume/s for an image volume size of 160×80×1024 (X×Y×Z) pixels. We have used this system to visualize and guide two prototypical microsurgical maneuvers: microvascular anastomosis of the rat femoral artery and ultramicrovascular isolation of the retinal arterioles of the bovine retina. Our preliminary experiments using 3D-OCT-guided microvascular anastomosis showed optimal visualization of the rat femoral artery (diameter<0.8  mm), instruments, and suture material. Real-time intraoperative guidance helped facilitate precise suture placement due to optimized views of the vessel wall during anastomosis. Using the bovine retina as a model system, we have performed “ultra microvascular” feasibility studies by guiding handheld surgical micro-instruments to isolate retinal arterioles (diameter∼0.1  mm). Isolation of the microvessels was confirmed by successfully passing a suture beneath the vessel in the 3D imaging environment. PMID:23224164

  4. Hybrid-dual-fourier tomographic algorithm for a fast three-dimensionial optical image reconstruction in turbid media

    NASA Technical Reports Server (NTRS)

    Alfano, Robert R. (Inventor); Cai, Wei (Inventor)

    2007-01-01

    A reconstruction technique for reducing computation burden in the 3D image processes, wherein the reconstruction procedure comprises an inverse and a forward model. The inverse model uses a hybrid dual Fourier algorithm that combines a 2D Fourier inversion with a 1D matrix inversion to thereby provide high-speed inverse computations. The inverse algorithm uses a hybrid transfer to provide fast Fourier inversion for data of multiple sources and multiple detectors. The forward model is based on an analytical cumulant solution of a radiative transfer equation. The accurate analytical form of the solution to the radiative transfer equation provides an efficient formalism for fast computation of the forward model.

  5. Fourier phase analysis on equilibrium gated radionuclide ventriculography: Range of phase spread and cut-off limits in normal individuals

    PubMed Central

    Ramaiah, Vijayaraghavan L; Harish, B; Sunil, HV; Selvakumar, Job; Ravi, Kishore AG; Nair, Gopinathan

    2011-01-01

    Aim: To define the range of phase spread on equilibrium gated radionuclide ventriculography (ERNV) in normal individuals and derive the cut-off limit for the parameters to detect cardiac dyssynchrony. Materials and Methods: ERNV was carried out in 30 individuals (age 53±23 years, 25 males and 5 females) who had no history of cardiovascular disease. They all had normal left ventricular ejection fraction (LVEF 55–70%) as determined by echocardiography, were in sinus rhythm, with normal QRS duration (≤120 msec) and normal coronary angiography. First harmonic phase analysis was performed on scintigraphic data acquired in best septal view. Left and right ventricular standard deviation (LVSD and RVSD, respectively) and interventricular mechanical delay (IVMD), the absolute difference of mean phase angles of right and left ventricle, were computed and expressed in milliseconds. Mean + 3 standard deviation (SD) was used to derive the cut-off limits. Results: Average LVEF and duration of cardiac cycle in the study group were 62.5%±5.44% and 868.9±114.5 msec, respectively. The observations of LVSD, RVSD and right and left ventricular mean phase angles were shown to be normally distributed by Shapiro–Wilk test. Cut-off limits for LVSD, RVSD and IVMD were calculated to be 80 msec, 85 msec and 75 msec, respectively. Conclusion: Fourier phase analysis on ERNV is an effective tool for the evaluation of synchronicity of cardiac contraction. The cut-off limits of parameters of dyssynchrony can be used to separate heart failure patients with cardiac dyssynchrony from those without. ERNV can be used to select patients for cardiac resynchronization therapy. PMID:23326063

  6. X-ray Phase Imaging Microscopy with Two-Dimensional Knife-Edge Filters

    NASA Astrophysics Data System (ADS)

    Choi, Jaeho; Park, Yong-Sung

    2012-04-01

    A novel scheme of X-ray differential phase imaging was implemented with an array source and a two-dimensional Foucault knife-edge (2DFK). A pinhole array lens was employed to manipulate the X-ray beam on the Fourier space. An emerging biaxial scanning procedure was also demonstrated with the periodic 2DFK. The differential phase images (DPIs) of the midrib in a leaf of a rose bush were visualized to verify the phase imaging of biological specimens by the proposed method. It also has features of depicting multiple-stack phase images, and rendering morphological DPIs, because it acquires pure phase information.

  7. MEMS-Based Handheld Fourier Domain Doppler Optical Coherence Tomography for Intraoperative Microvascular Anastomosis Imaging

    PubMed Central

    Huang, Yong; Furtmüller, Georg J.; Tong, Dedi; Zhu, Shan; Lee, W. P. Andrew; Brandacher, Gerald; Kang, Jin U.

    2014-01-01

    Purpose To demonstrate the feasibility of a miniature handheld optical coherence tomography (OCT) imager for real time intraoperative vascular patency evaluation in the setting of super-microsurgical vessel anastomosis. Methods A novel handheld imager Fourier domain Doppler optical coherence tomography based on a 1.3-µm central wavelength swept source for extravascular imaging was developed. The imager was minimized through the adoption of a 2.4-mm diameter microelectromechanical systems (MEMS) scanning mirror, additionally a 12.7-mm diameter lens system was designed and combined with the MEMS mirror to achieve a small form factor that optimize functionality as a handheld extravascular OCT imager. To evaluate in-vivo applicability, super-microsurgical vessel anastomosis was performed in a mouse femoral vessel cut and repair model employing conventional interrupted suture technique as well as a novel non-suture cuff technique. Vascular anastomosis patency after clinically successful repair was evaluated using the novel handheld OCT imager. Results With an adjustable lateral image field of view up to 1.5 mm by 1.5 mm, high-resolution simultaneous structural and flow imaging of the blood vessels were successfully acquired for BALB/C mouse after orthotopic hind limb transplantation using a non-suture cuff technique and BALB/C mouse after femoral artery anastomosis using a suture technique. We experimentally quantify the axial and lateral resolution of the OCT to be 12.6 µm in air and 17.5 µm respectively. The OCT has a sensitivity of 84 dB and sensitivity roll-off of 5.7 dB/mm over an imaging range of 5 mm. Imaging with a frame rate of 36 Hz for an image size of 1000(lateral)×512(axial) pixels using a 50,000 A-lines per second swept source was achieved. Quantitative vessel lumen patency, lumen narrowing and thrombosis analysis were performed based on acquired structure and Doppler images. Conclusions A miniature handheld OCT imager that can be used for

  8. INTERFACE OF A REVERSE-PHASE HIGH-PERFORMANCE LIQUID CHROMATOGRAPH WITH A DIFFUSE REFLECTANCE FOURIER TRANSFORM INFRARED SPECTROMETER

    EPA Science Inventory

    An approach to the interface of a reverse-phase high-performance liquid chromatograph and a Fourier transform infrared spectrometer has been developed in which the solutes eluting from the column are continuously extracted into dichloromethane. The application of both flow cell a...

  9. PHASE CORRELATION METHOD FOR THE ALIGNMENT OF TOTAL SOLAR ECLIPSE IMAGES

    SciTech Connect

    Druckmueller, M.

    2009-12-01

    A modified phase correlation method, based on Fourier transform, which enables the alignment of solar coronal images taken during the total solar eclipses, is presented. The method enables the measurement of translation, rotation, and scaling factor between two images. With the application of this technique, pairs of images with different exposure times, different brightness scale, such as linear for CCD and nonlinear for images taken with photographic film, and even images from different emission lines can be aligned with sub-pixel precision.

  10. Hyperspectral imaging Fourier transform spectrometers for astronomical and remote sensing observations

    NASA Astrophysics Data System (ADS)

    Rafert, J. Bruce; Sellar, R. Glenn; Holbert, Eirik; Blatt, Joel H.; Tyler, David W.; Durham, Susan E.; Newby, Harold D.

    1994-06-01

    The Florida Institue of Technology and the Phillips Laboratory have developed several advanced visible (0.4-0.8 micrometers ) imaging fourier transform spectrometer (IFTS) brassboards, which simultaneously acquire one spatial and one spectral dimension of the hyperspectral image cube. The initial versions of these instruments may be scanned across a scene or configured with a scan mirror to pick up the second spatial dimension of the image cube. The current visible hyperspectral imagers possess a combination of features, including (1) low to moderate spectral resolution for hundreds/thousands of spectral channels, (2) robust design, with no moving parts, (3) detector limited free spectral range, (4) detector-limited spatial and spectral resolution, and (5) field widened operation. The utility of this type of instrument reaches its logical conclusion however, with an instrument designed to acquire all three dimensions of the hyperspectral image cube (both spatial and one spectral) simultaneously. In this paper we present the (1) detailed optical system designs for the brassboard instruments, (2) the current data acquisition system, (3) data reduction and analysis techniques unique to hyperspectral sensor systems which operate with photometric accuracy, and (4) several methods to modify the basic instrument design to allow simultaneous acquistion of the entire hyperspectral image cube. The hyperspectral sensor systems which are being developed and whose utility is being pioneered by Florida Tech and the Phillips Laboratory are applicable to numerous DoD and civil applications including (1) space object identification, (2) radiometrically correct satellite image and spectral signature database observations, (3) simultaneous spactial/spectral observations of booster plumes for strategic and surrogate tactical missile signature identification, and (4) spatial/spectral visible and IR astronomical observations with photometric accuracy.

  11. Deep-subwavelength Nanometric Image Reconstruction using Fourier Domain Optical Normalization

    PubMed Central

    Qin, Jing; Silver, Richard M.; Barnes, Bryan M.; Zhou, Hui; Dixson, Ronald G.; Henn, Mark-Alexander

    2016-01-01

    Quantitative optical measurements of deep sub-wavelength, three-dimensional, nanometric structures with sensitivity to sub-nanometer details address an ubiquitous measurement challenge. A Fourier domain normalization approach is used in the Fourier optical imaging code to simulate the full three-dimensional scattered light field of nominally 15 nm sized structures, accurately replicating the light field as a function of the focus position. Using the full three-dimensional light field, nanometer scale details such as a 2 nm thin conformal oxide and nanometer topography are rigorously fitted for features less than 1/30th of the wavelength in size. The densely packed structures are positioned nearly an order of magnitude closer than the conventional Rayleigh resolution limit and can be measured with sub-nanometer parametric uncertainties. This approach enables a practical measurement sensitivity to size variations of only a few atoms in size using a high throughput optical configuration with broad application in measuring nanometric structures and nanoelectronic devices. PMID:26925297

  12. A Fourier transform infrared microspectroscopic imaging investigation into an animal model exhibiting glioblastoma multiforme.

    PubMed

    Bambery, K R; Schültke, E; Wood, B R; Rigley MacDonald, S T; Ataelmannan, K; Griebel, R W; Juurlink, B H J; McNaughton, D

    2006-07-01

    Glioblastoma multiforme (GBM) is a highly malignant human brain tumour for which no cure is available at present. Numerous clinical studies as well as animal experiments are under way with the goal being to understand tumour biology and develop potential therapeutic approaches. C6 cell glioma in the adult rat is a frequently used and well accepted animal model for the malignant human glial tumour. By combining standard analytical methods such as histology and immunohistochemistry with Fourier Transform Infrared (FTIR) microspectroscopic imaging and multivariate statistical approaches, we are developing a novel approach to tumour diagnosis which allows us to obtain information about the structure and composition of tumour tissues that could not be obtained easily with either method alone. We have used a "Stingray" FTIR imaging spectrometer to analyse and compare the compositions of coronal brain tissue sections of a tumour-bearing animal and those from a healthy animal. We have found that the tumour tissue has a characteristic chemical signature, which distinguishes it from tumour-free brain tissue. The physical-chemical differences, determined by image and spectral comparison are consistent with changes in total protein absorbance, phosphodiester absorbance and physical dispersive artefacts. The results indicate that FTIR imaging analysis could become a valuable analytic method in brain tumour research and possibly in the diagnosis of human brain tumours. PMID:16815240

  13. Image reconstruction from partial pseudo polar Fourier sampling based on alternating direction total variation minimization

    NASA Astrophysics Data System (ADS)

    Liu, Qiu-hong; Shu, Fan; Zhang, Wen-kun; Cai, Ai-long; Li, Lei; Yan, Bin

    2013-08-01

    Linear scan Computed Tomography (LCT) has emerged as a promising technique in fields like industrial scanning and security inspection due to its straight-line source trajectory and high scanning speed. However, in practical applications of LCT, the ordinary algorithms suffer from serious artifacts owing to the limited-angle and insufficient data. In this paper, a new method which reconstructs image from partial Fourier data sampled in pseudo polar grid based on alternating direction anisometric total variation minimization has been proposed. The main idea is to reform the image reconstruction problem into solving an under-determined linear equation, and then reconstruct image by applying the popular total variation (TV) minimization to reform an unconstraint optimization by means of augmented Lagrange method and using the alternating minimization method of multiplier (ADMM) which contributes to the fast convergence. The proposed method is practical in the large-scale task of reconstruction due to its algorithmic simplicity and computational efficiency and reconstructs better images. The results of the numerical simulations and pseudo real data reconstructions from the linear scan validate that the proposed method is both efficient and accurate.

  14. An effective approach for iris recognition using phase-based image matching.

    PubMed

    Miyazawa, Kazuyuki; Ito, Koichi; Aoki, Takafumi; Kobayashi, Koji; Nakajima, Hiroshi

    2008-10-01

    This paper presents an efficient algorithm for iris recognition using phase-based image matching--an image matching technique using phase components in 2D Discrete Fourier Transforms (DFTs) of given images. Experimental evaluation using CASIA iris image databases (versions 1.0 and 2.0) and Iris Challenge Evaluation (ICE) 2005 database clearly demonstrates that the use of phase components of iris images makes possible to achieve highly accurate iris recognition with a simple matching algorithm. This paper also discusses major implementation issues of our algorithm. In order to reduce the size of iris data and to prevent the visibility of iris images, we introduce the idea of 2D Fourier Phase Code (FPC) for representing iris information. The 2D FPC is particularly useful for implementing compact iris recognition devices using state-of-the-art Digital Signal Processing (DSP) technology. PMID:18703828

  15. Higher-dimensional phase imaging

    NASA Astrophysics Data System (ADS)

    Huntley, Jonathan M.

    2010-04-01

    Traditional full-field interferometric techniques (speckle, moiré, holography etc) provide 2-D phase images, which encode the surface deformation state of the object under test. Over the past 15 years, the use of additional spatial or temporal dimensions has been investigated by a number of research groups. Early examples include the measurement of 3-D surface profiles by temporally-varying projected fringe patterns, and dynamic speckle interferometry. More recently (the past 5 years) a family of related techniques (Wavelength Scanning Interferometry, Phase Contrast Spectral Optical Coherence Tomography (OCT), and Tilt Scanning Interferometry) has emerged that provides the volume deformation state of the object. The techniques can be thought of as a marriage between the phase sensing capabilities of Phase Shifting Interferometry and the depth-sensing capabilities of OCT. Finally, in the past 12 months a technique called Hyperspectral Interferometry has been proposed in which absolute optical path distributions are obtained in a single shot through the spectral decomposition of a white light interferogram, and for which the additional dimension therefore corresponds to the illumination wavenumber. An overview of these developments, and the related issue of robust phase unwrapping of noisy 3-D wrapped phase volumes, is presented in this paper.

  16. GPC and quantitative phase imaging

    NASA Astrophysics Data System (ADS)

    Palima, Darwin; Bañas, Andrew Rafael; Villangca, Mark Jayson; Glückstad, Jesper

    2016-03-01

    Generalized Phase Contrast (GPC) is a light efficient method for generating speckle-free contiguous optical distributions using binary-only or analog phase levels. It has been used in applications such as optical trapping and manipulation, active microscopy, structured illumination, optical security, parallel laser marking and labelling and recently in contemporary biophotonics applications such as for adaptive and parallel two-photon optogenetics and neurophotonics. We will present our most recent GPC developments geared towards these applications. We first show a very compact static light shaper followed by the potential of GPC for biomedical and multispectral applications where we experimentally demonstrate the active light shaping of a supercontinuum laser over most of the visible wavelength range. Finally, we discuss how GPC can be advantageously applied for Quantitative Phase Imaging (QPI).

  17. Manipulating stored images with phase imprinting at low light levels.

    PubMed

    Zhao, L; Yang, Guojian; Duan, Wenhui

    2012-07-15

    Coherent manipulation of stored images is performed at low light levels based on enhanced cross-Kerr nonlinearity in a four-level N-type electromagnetically induced transparency (EIT) system. Using intensity masks in the signal pulse, quadratic phase shifts with low nonlinear absorption can be efficiently imprinted on the Fraunhofer diffraction patterns already stored in the EIT system. Fast-Fourier-transform-based numerical simulations clearly demonstrate that the far-field images of the retrieved probe light can be flexibly modulated by applying different signal fields. Our studies could help advance the goals of nonlinear all-optical processing for spatial information coherently stored in EIT systems. PMID:22825156

  18. New scientific results with SpIOMM: a testbed for CFHT's imaging Fourier transform spectrometer SITELLE

    NASA Astrophysics Data System (ADS)

    Drissen, L.; Alarie, A.; Martin, T.; Lagrois, D.; Rousseau-Nepton, L.; Bilodeau, A.; Robert, C.; Joncas, G.; Iglesias-Páramo, J.

    2012-09-01

    We present new data obtained with SpIOMM, the imaging Fourier transform spectrometer attached to the 1.6-m telescope of the Observatoire du Mont-Megantic in Québec. Recent technical and data reduction improvements have significantly increased SpIOMM's capabilities to observe fainter objects or weaker nebular lines, as well as continuum sources and absorption lines, and to increase its modulation efficiency in the near ultraviolet. To illustrate these improvements, we present data on the supernova remnant Cas A, planetary nebulae M27 and M97, the Wolf-Rayet ring nebula M1-67, spiral galaxies M63 and NGC 3344, as well as the interacting pair of galaxies Arp 84.

  19. Science results from the imaging Fourier transform spectrometer SpIOMM

    NASA Astrophysics Data System (ADS)

    Drissen, L.; Bernier, A.-P.; Charlebois, M.; Brière, É.; Robert, C.; Joncas, G.; Martin, P.; Grandmont, F.

    2008-07-01

    SpIOMM is an imaging Fourier transform spectrometer designed to obtain the visible range (350 - 850 nm) spectrum of every light source in a circular field of view of 12 arcminutes in diameter. Attached to the 1.6-m telescope of the Observatoire du Mont Megantic in southern Quebec. We present here some results of three successful observing runs in 2007, which highlight SpIOMM's capabilities to map emission line objects over a very wide field of view and a broad spectral range. In particular, we discuss data cubes from the planetary nebula M27, the supernova remnants NGC 6992 and M1, the barred spiral galaxy NGC7479, as well as Stephan's quintet, and interacting group of galaxies.

  20. Imaging open-path Fourier transform infrared spectrometer for 3D cloud profiling

    NASA Astrophysics Data System (ADS)

    Rentz Dupuis, Julia; Mansur, David J.; Vaillancourt, Robert; Carlson, David; Evans, Thomas; Schundler, Elizabeth; Todd, Lori; Mottus, Kathleen

    2010-04-01

    OPTRA has developed an imaging open-path Fourier transform infrared (I-OP-FTIR) spectrometer for 3D profiling of chemical and biological agent simulant plumes released into test ranges and chambers. An array of I-OP-FTIR instruments positioned around the perimeter of the test site, in concert with advanced spectroscopic algorithms, enables real time tomographic reconstruction of the plume. The approach is intended as a referee measurement for test ranges and chambers. This Small Business Technology Transfer (STTR) effort combines the instrumentation and spectroscopic capabilities of OPTRA, Inc. with the computed tomographic expertise of the University of North Carolina, Chapel Hill. In this paper, we summarize the design and build and detail system characterization and test of a prototype I-OP-FTIR instrument. System characterization includes radiometric performance and spectral resolution. Results from a series of tomographic reconstructions of sulfur hexafluoride plumes in a laboratory setting are also presented.

  1. Imaging open-path Fourier transform infrared spectrometer for 3D cloud profiling

    NASA Astrophysics Data System (ADS)

    Rentz Dupuis, Julia; Mansur, David J.; Engel, James R.; Vaillancourt, Robert; Todd, Lori; Mottus, Kathleen

    2008-04-01

    OPTRA and University of North Carolina are developing an imaging open-path Fourier transform infrared (I-OP-FTIR) spectrometer for 3D profiling of chemical and biological agent simulant plumes released into test ranges and chambers. An array of I-OP-FTIR instruments positioned around the perimeter of the test site, in concert with advanced spectroscopic algorithms, enables real time tomographic reconstruction of the plume. The approach will be considered as a candidate referee measurement for test ranges and chambers. This Small Business Technology Transfer (STTR) effort combines the instrumentation and spectroscopic capabilities of OPTRA, Inc. with the computed tomographic expertise of the University of North Carolina, Chapel Hill. In this paper, we summarize progress to date and overall system performance projections based on the instrument, spectroscopy, and tomographic reconstruction accuracy. We then present a preliminary optical design of the I-OP-FTIR.

  2. Short-range remote detection of liquid surface contamination by active imaging Fourier transform spectrometry.

    PubMed

    Harig, Roland; Braun, René; Dyer, Chris; Howle, Chris; Truscott, Benjamin

    2008-04-14

    An imaging Fourier transform spectrometer developed at TUHH was used for short-range remote detection and identification of liquids on surfaces. The method is based on the measurement of infrared radiation emitted and reflected by the surface and the liquid. A radiative transfer model that takes both the real and imaginary parts of the refractive index of the materials into account has been developed. The model is applied for the detection and identification of potentially hazardous liquids. Measurements of various liquids on diverse surfaces were performed. The measured spectra depend on the optical properties of the background surface. However, using the radiative transfer model, automatic remote detection and identification of the liquids is possible. The agreement between measured spectra and spectra calculated using the radiative transfer model is excellent. PMID:18542678

  3. Imaging phased telescope array study

    NASA Technical Reports Server (NTRS)

    Harvey, James E.

    1989-01-01

    The problems encountered in obtaining a wide field-of-view with large, space-based direct imaging phased telescope arrays were considered. After defining some of the critical systems issues, previous relevant work in the literature was reviewed and summarized. An extensive list was made of potential error sources and the error sources were categorized in the form of an error budget tree including optical design errors, optical fabrication errors, assembly and alignment errors, and environmental errors. After choosing a top level image quality requirment as a goal, a preliminary tops-down error budget allocation was performed; then, based upon engineering experience, detailed analysis, or data from the literature, a bottoms-up error budget reallocation was performed in an attempt to achieve an equitable distribution of difficulty in satisfying the various allocations. This exercise provided a realistic allocation for residual off-axis optical design errors in the presence of state-of-the-art optical fabrication and alignment errors. Three different computational techniques were developed for computing the image degradation of phased telescope arrays due to aberrations of the individual telescopes. Parametric studies and sensitivity analyses were then performed for a variety of subaperture configurations and telescope design parameters in an attempt to determine how the off-axis performance of a phased telescope array varies as the telescopes are scaled up in size. The Air Force Weapons Laboratory (AFWL) multipurpose telescope testbed (MMTT) configuration was analyzed in detail with regard to image degradation due to field curvature and distortion of the individual telescopes as they are scaled up in size.

  4. Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

    SciTech Connect

    Lupoi, Jason S.; Smith-Moritz, Andreia; Singh, Seema; McQualter, Richard; Scheller, Henrik V.; Simmons, Blake A.; Henry, Robert J.

    2015-07-10

    Background: Slow-degrading, fossil fuel-derived plastics can have deleterious effects on the environment, especially marine ecosystems. The production of bio-based, biodegradable plastics from or in plants can assist in supplanting those manufactured using fossil fuels. Polyhydroxybutyrate (PHB) is one such biodegradable polyester that has been evaluated as a possible candidate for relinquishing the use of environmentally harmful plastics. Results: PHB, possessing similar properties to polyesters produced from non-renewable sources, has been previously engineered in sugarcane, thereby creating a high-value co-product in addition to the high biomass yield. This manuscript illustrates the coupling of a Fourier-transform infrared microspectrometer, equipped with a focal plane array (FPA) detector, with multivariate imaging to successfully identify and localize PHB aggregates. Principal component analysis imaging facilitated the mining of the abundant quantity of spectral data acquired using the FPA for distinct PHB vibrational modes. PHB was measured in the chloroplasts of mesophyll and bundle sheath cells, acquiescent with previously evaluated plant samples. Conclusion: This study demonstrates the power of IR microspectroscopy to rapidly image plant sections to provide a snapshot of the chemical composition of the cell. While PHB was localized in sugarcane, this method is readily transferable to other value-added co-products in different plants.

  5. Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

    DOE PAGESBeta

    Lupoi, Jason S.; Smith-Moritz, Andreia; Singh, Seema; McQualter, Richard; Scheller, Henrik V.; Simmons, Blake A.; Henry, Robert J.

    2015-07-10

    Background: Slow-degrading, fossil fuel-derived plastics can have deleterious effects on the environment, especially marine ecosystems. The production of bio-based, biodegradable plastics from or in plants can assist in supplanting those manufactured using fossil fuels. Polyhydroxybutyrate (PHB) is one such biodegradable polyester that has been evaluated as a possible candidate for relinquishing the use of environmentally harmful plastics. Results: PHB, possessing similar properties to polyesters produced from non-renewable sources, has been previously engineered in sugarcane, thereby creating a high-value co-product in addition to the high biomass yield. This manuscript illustrates the coupling of a Fourier-transform infrared microspectrometer, equipped with a focalmore » plane array (FPA) detector, with multivariate imaging to successfully identify and localize PHB aggregates. Principal component analysis imaging facilitated the mining of the abundant quantity of spectral data acquired using the FPA for distinct PHB vibrational modes. PHB was measured in the chloroplasts of mesophyll and bundle sheath cells, acquiescent with previously evaluated plant samples. Conclusion: This study demonstrates the power of IR microspectroscopy to rapidly image plant sections to provide a snapshot of the chemical composition of the cell. While PHB was localized in sugarcane, this method is readily transferable to other value-added co-products in different plants.« less

  6. Discrimination of healthy and osteoarthritic articular cartilage by Fourier transform infrared imaging and Fisher's discriminant analysis.

    PubMed

    Mao, Zhi-Hua; Yin, Jian-Hua; Zhang, Xue-Xi; Wang, Xiao; Xia, Yang

    2016-02-01

    Fourier transform infrared spectroscopic imaging (FTIRI) technique can be used to obtain the quantitative information of content and spatial distribution of principal components in cartilage by combining with chemometrics methods. In this study, FTIRI combining with principal component analysis (PCA) and Fisher's discriminant analysis (FDA) was applied to identify the healthy and osteoarthritic (OA) articular cartilage samples. Ten 10-μm thick sections of canine cartilages were imaged at 6.25μm/pixel in FTIRI. The infrared spectra extracted from the FTIR images were imported into SPSS software for PCA and FDA. Based on the PCA result of 2 principal components, the healthy and OA cartilage samples were effectively discriminated by the FDA with high accuracy of 94% for the initial samples (training set) and cross validation, as well as 86.67% for the prediction group. The study showed that cartilage degeneration became gradually weak with the increase of the depth. FTIRI combined with chemometrics may become an effective method for distinguishing healthy and OA cartilages in future. PMID:26977354

  7. Effect of transmitting beam position error on the imaging quality of a Fourier telescope

    NASA Astrophysics Data System (ADS)

    Zhou, Zhi-sheng; Bin, Xiang-Li; Zhang, Wen-xi; Li, Yang; Kong, Xin-xin; Lv, Xiao-yu

    2013-09-01

    The effect of beam position error on the imaging quality of a Fourier telescope is analyzed in this paper. First, the origin of the transmitting beam position error and the error types are discussed. Second, a numerical analysis is performed. To focus on the transmitting beam position error, other noise sources exclusive of the reconstruction process are neglected. The Strehl ratio is set to be the objective function and the transfer function of the position error is constructed. Based on the numerical model, the features of Strehl ratio reduction caused by position error are deduced. Third, simulations are performed to study the position error effect on the imaging quality. A plot of the Strehl ratio versus the different levels of position errors is obtained and the simulation results validate the numerical model to a certain extent. According to the simulation results, a high value of the transmitting beam position error obviously degrades the imaging quality of the system; thus, it is essential to contain the position error within a relatively low level.

  8. 3D imaging of dental hard tissues with Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Chen, Yueli L.; Yang, Yi; Ma, Jing; Yan, Jun; Shou, Yuanxin; Wang, Tianheng; Ramesh, Aruna; Zhao, Jing; Zhu, Quing

    2011-03-01

    A fiber optical coherence tomography (OCT) probe is used for three dimensional dental imaging. The probe has a lightweight miniaturized design with a size of a pen to facilitate clinic in vivo diagnostics. The probe is interfaced with a swept-source / Fourier domain optical coherence tomography at 20K axial scanning rate. The tooth samples were scanned from occlusal, buccal, lingual, mesial, and distal orientations. Three dimensional imaging covers tooth surface area up to 10 mm x 10 mm with a depth about 5 mm, where a majority of caries affection occurs. OCT image provides better resolution and contrast compared to gold standard dental radiography (X-ray). In particular, the technology is well suited for occlusal caries detection. This is complementary to X-ray as occlusal caries affection is difficult to be detected due to the X-ray projectile scan geometry. The 3D topology of occlusal surface as well as the dentin-enamel junction (DEJ) surface inside the tooth can be visualized. The lesion area appears with much stronger back scattering signal intensity.

  9. Data processing pipeline for a time-sampled imaging Fourier transform spectrometer

    NASA Astrophysics Data System (ADS)

    Naylor, David A.; Fulton, Trevor R.; Davis, Peter W.; Chapman, Ian M.; Gom, Brad G.; Spencer, Locke D.; Lindner, John V.; Nelson-Fitzpatrick, Nathan E.; Tahic, Margaret K.; Davis, Gary R.

    2004-10-01

    Imaging Fourier transform spectrometers (IFTS) are becoming the preferred systems for remote sensing spectral imaging applications because of their ability to provide, simultaneously, both high spatial and spectral resolution images of a scene. IFTS can be operated in either step-and-integrate or rapid-scan modes, where it is common practice to sample interferograms at equal optical path difference intervals. The step-and-integrate mode requires a translation stage with fast and precise point-to-point motion and additional external trigger circuitry for the detector focal plane array (FPA), and produces uniformly position-sampled interferograms which can be analyzed using standard FFT routines. In the rapid-scan mode, the translation stage is continuously moving and interferograms are often acquired at the frame-rate of the FPA. Since all translation stages have associated velocity errors, the resulting interferograms are sampled at non-uniform intervals of optical path difference, which requires more sophisticated analysis. This paper discusses the processing pipeline which is being developed for the analysis of the non-uniform rapid-scan data produced by the Herschel/SPIRE IFTS.

  10. Proposal of AAA-battery-size one-shot ATR Fourier spectroscopic imager for on-site analysis: Simultaneous measurement of multi-components with high accuracy

    NASA Astrophysics Data System (ADS)

    Hosono, Satsuki; Qi, Wei; Sato, Shun; Suzuki, Yo; Fujiwara, Masaru; Hiramatsu, Hiroyuki; Suzuki, Satoru; Abeygunawardhana, P. K. W.; Wada, Kenji; Nishiyama, Akira; Ishimaru, Ichiro

    2015-03-01

    For simultaneous measurement of multi-components on-site like factories, the ultra-compact (diameter: 9[mm], length: 45[mm], weight: 200[g]) one-shot ATR (Attenuated Total Reflection) Fourier spectroscopic imager was proposed. Because the proposed one-shot Fourier spectroscopic imaging is based on spatial-phase-shift interferometer, interferograms could be obtained with simple optical configurations. We introduced the transmission-type relativeinclined phase-shifter, that was constructed with a cuboid prism and a wedge prism, onto the optical Fourier transform plane of infinity corrected optical systems. And also, small light-sources and cameras in the mid-infrared light region, whose size are several millimeter on a side, are essential components for the ultra-compact spectroscopic configuration. We selected the Graphite light source (light source area: 1.7×1.7[mm], maker: Hawkeye technologies) whose radiation factor was high. Fortunately, in these days we could apply the cost-effective 2-dimensional light receiving device for smartphone (e.g. product name: LEPTON, maker: FLIR, price: around 400USD). In the case of alcoholic drinks factory, conventionally workers measure glucose and ethanol concentrations by bringing liquid solution back to laboratories every day. The high portable spectroscopy will make it possible to measure multi-components simultaneously on manufacturing scene. But we found experimentally that absorption spectrum of glucose and water and ethanol were overlapped each other in near infrared light region. But for mid-infrared light region, we could distinguish specific absorption peaks of glucose (@10.5[μm]) and ethanol (@11.5[μm]) independently from water absorption. We obtained standard curve between absorption (@9.6[μm]) and ethanol concentration with high correlation coefficient 0.98 successfully by ATR imaging-type 2-dimensional Fourier spectroscopy (wavelength resolution: 0.057[μm]) with the graphite light source (maker: Hawkeye

  11. Fast Imaging Detector Readout Circuits with In-Pixel ADCs for Fourier Transform Imaging Spectrometers

    NASA Technical Reports Server (NTRS)

    Rider, D.; Blavier, J-F.; Cunningham, T.; Hancock, B.; Key, R.; Pannell, Z.; Sander, S.; Seshadri, S.; Sun, C.; Wrigley, C.

    2011-01-01

    Focal plane arrays (FPAs) with high frame rates and many pixels benefit several upcoming Earth science missions including GEO-CAPE, GACM, and ACE by enabling broader spatial coverage and higher spectral resolution. FPAs for the PanFTS, a high spatial resolution Fourier transform spectrometer and a candidate instrument for the GEO-CAPE mission are the focus of the developments reported here, but this FPA technology has the potential to enable a variety of future measurements and instruments. The ESTO ACT Program funded the developed of a fast readout integrated circuit (ROIC) based on an innovative in-pixel analog-to-digital converter (ADC). The 128 X 128 pixel ROIC features 60 ?m pixels, a 14-bit ADC in each pixel and operates at a continuous frame rate of 14 kHz consuming only 1.1 W of power. The ROIC outputs digitized data completely eliminating the bulky, power consuming signal chains needed by conventional FPAs. The 128 X 128 pixel ROIC has been fabricated in CMOS and tested at the Jet Propulsion Laboratory. The current version is designed to be hybridized with PIN photodiode arrays via indium bump bonding for light detection in the visible and ultraviolet spectral regions. However, the ROIC design incorporates a small photodiode in each cell to permit detailed characterization of the ROICperformance without the need for hybridization. We will describe the essential features of the ROIC design and present results of ROIC performance measurements.

  12. Correction for Eddy Current-Induced Echo-Shifting Effect in Partial-Fourier Diffusion Tensor Imaging

    PubMed Central

    Truong, Trong-Kha; Song, Allen W.; Chen, Nan-kuei

    2015-01-01

    In most diffusion tensor imaging (DTI) studies, images are acquired with either a partial-Fourier or a parallel partial-Fourier echo-planar imaging (EPI) sequence, in order to shorten the echo time and increase the signal-to-noise ratio (SNR). However, eddy currents induced by the diffusion-sensitizing gradients can often lead to a shift of the echo in k-space, resulting in three distinct types of artifacts in partial-Fourier DTI. Here, we present an improved DTI acquisition and reconstruction scheme, capable of generating high-quality and high-SNR DTI data without eddy current-induced artifacts. This new scheme consists of three components, respectively, addressing the three distinct types of artifacts. First, a k-space energy-anchored DTI sequence is designed to recover eddy current-induced signal loss (i.e., Type 1 artifact). Second, a multischeme partial-Fourier reconstruction is used to eliminate artificial signal elevation (i.e., Type 2 artifact) associated with the conventional partial-Fourier reconstruction. Third, a signal intensity correction is applied to remove artificial signal modulations due to eddy current-induced erroneous T2∗-weighting (i.e., Type 3 artifact). These systematic improvements will greatly increase the consistency and accuracy of DTI measurements, expanding the utility of DTI in translational applications where quantitative robustness is much needed. PMID:26413505

  13. Null test fourier domain alignment technique for phase-shifting point diffraction interferometer

    DOEpatents

    Naulleau, Patrick; Goldberg, Kenneth Alan

    2000-01-01

    Alignment technique for calibrating a phase-shifting point diffraction interferometer involves three independent steps where the first two steps independently align the image points and pinholes in rotation and separation to a fixed reference coordinate system, e.g, CCD. Once the two sub-elements have been properly aligned to the reference in two parameters (separation and orientation), the third step is to align the two sub-element coordinate systems to each other in the two remaining parameters (x,y) using standard methods of locating the pinholes relative to some easy to find reference point.

  14. Mathematical Investigation of Gamma Ray and Neutron Absorption Grid Patterns for Homeland Defense Related Fourier Imaging Systems

    NASA Technical Reports Server (NTRS)

    Boccio, Dona

    2003-01-01

    Terrorist suitcase nuclear devices typically using converted Soviet tactical nuclear warheads contain several kilograms of plutonium. This quantity of plutonium emits a significant number of gamma rays and neutrons as it undergoes radioactive decay. These gamma rays and neutrons normally penetrate ordinary matter to a significant distance. Unfortunately this penetrating quality of the radiation makes imaging with classical optics impractical. However, this radiation signature emitted by the nuclear source may be sufficient to be imaged from low-flying aerial platforms carrying Fourier imaging systems. The Fourier imaging system uses a pair of co-aligned absorption grids to measure a selected range of spatial frequencies from an object. These grids typically measure the spatial frequency in only one direction at a time. A grid pair that looks in all directions simultaneously would be an improvement over existing technology. A number of grid pairs governed by various parameters were investigated to solve this problem. By examining numerous configurations, it became apparent that an appropriate spiral pattern could be made to work. A set of equations was found to describe a grid pattern that produces straight fringes. Straight fringes represent a Fourier transform of a point source at infinity. An inverse Fourier transform of this fringe pattern would provide an accurate image (location and intensity) of a point source.

  15. Evaluation of the uncertainty of phase-difference measurements in (quasi-)Fourier transform digital holographic interferometry

    NASA Astrophysics Data System (ADS)

    Doval, Ángel F.; Trillo, Cristina; López Vázquez, José Carlos; Fernández, José L.

    2015-08-01

    Estimation of the uncertainty is an essential requisite for high-end measurement systems. In this communication we derive an expression to evaluate the standard uncertainty of the phase-difference measurements resulting from Fourier and quasi-Fourier transform digital holographic interferometry. We apply the law of propagation of uncertainty, as defined in the "Guide to the expression of uncertainty in measurement" (GUM), to the digital reconstruction of two holograms by Fourier transformation and to the subsequent calculation of the phase change between the holographic reconstructions. The resulting expression allows the evaluation of the uncertainty of the phase difference at every pixel in the reconstruction plane in terms of the measured hologram brightness values and their uncertainty at the whole of the pixels of the original digital holograms. This expression is simplified by assuming a linear dependence between the uncertainty and the local value of the original holograms; in that case, the local uncertainty of the phase difference can be evaluated from the local complex values of the reconstructed holograms. We assess the behavior of the method by comparing the predicted standard uncertainty with the sample variance obtained from experiments conducted under repeatability conditions, and found a good correlation between both quantities. This experimental procedure can be also used to calibrate the parameters of the linear function relating the uncertainty with the local value of the digital holograms, for a given set of operational conditions of the acquisition device.

  16. Technical improvements and performances of SpIOMM: an imaging Fourier transform spectrometer for astronomy

    NASA Astrophysics Data System (ADS)

    Bernier, Anne-Pier; Charlebois, Maxime; Drissen, Laurent; Grandmont, Frédéric

    2008-07-01

    We present the most recent technical improvements on SpIOMM, an Imaging Fourier Transform Spectrometer (IFTS) attached to the 1.6 telescope of the Mont Megantic Observatory. The recent development of SpIOMM demonstrates that the concept of IFTS for ground telescopes is a promising astronomical 3D spectroscopy technique for multi-object spectroscopy and multi-band imaging. SpIOMM has been developed through a collaboration between Universite Laval and the industry (ABB Bomem). It is designed for optical observations from the near UV (350 nm) to the near IR (850 nm) with variable spectral resolution. The circular FOV of the instrument covers 12' in diameter. We have recently improved the servo system algorithm which now controls the mirror displacement and alignment at a rate of ~7kHz. Hardware improvements to the servo and the metrology system will be described along with their impacts on performance in the laboratory and in observing conditions. The instrument has successfully been operated at the 1.6 meter telescope this year using the revised control systems and acquired several datacubes. We will discuss some issues regarding the sensitivity to environmental conditions implied by the use of such an instrument. An overview of the datacube reduction procedure will show some solutions proposed for observational problems encountered that affect the quality of the data such as sky transmission variations, wind, changing gravity vector and temperature.

  17. The study of a single BGC823 cell using Fourier transform infrared microspectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Wang, Xin; Qi, Zeming; Wang, Shengyi; Liu, Gang; Gao, Helong; Tian, Yangchao

    2011-09-01

    In order to investigate gastric cancer at cellular and sub-cellular level, a single human gastric adenocarcinoma BGC823 cell was studied by an infrared microscope equipped with a focal plane array (FPA) detector. The spectra showed difference between the nucleus and the endoplasmic reticulum (ER) of the BGC823 cell. The peak of v asPO 2- was shifted to a higher wavenumber at the nucleus compared with that at the ER. The height ratios of 2954 cm -1/2922 cm -1 (CH 3/CH 2) and 1088 cm -1/1539 cm -1 (DNA/amide II) of the nucleus were significantly higher than those of the ER. Furthermore, chemical images reveal the intensity distributions of lipids, proteins and DNA of the single BGC823 cell, and the intense absorptions of proteins and DNA were observed in the nuclear region of the cell while the intense absorption of lipids was found in the ER region of the cell. The Fourier transform infrared (FTIR) microspectroscopic imaging result indicates the study of the single gastric cancer cell at sub-cellular level can be beneficial for knowing gastric cancer more which will be of great importance for the study and diagnosis of gastric cancer. The result also suggests that FPA is a useful tool in the study of a single cell and may be a powerful tool for study and diagnosis of gastric cancer.

  18. Imaging of the Internal Nasal Valve Using Long-Range Fourier Domain Optical Coherence Tomography

    PubMed Central

    Englhard, Anna S.; Wiedmann, Maximilian; Ledderose, Georg J.; Lemieux, Bryan; Badran, Alan; Chen, Zhongping; Betz, Christian S.; Wong, Brian J.

    2016-01-01

    Objectives/Hypothesis To evaluate for the first time the feasibility and methodology of long-range Fourier domain optical coherence tomography (LR-OCT) imaging of the internal nasal valve (INV) area in healthy individuals. Study Design Prospective individual cohort study. Methods For 16 individuals, OCT was performed in each nare. The angle and the cross-sectional area of the INV were measured. OCT images were compared to corresponding digital pictures recorded with a flexible endoscope. Results INV angle measured by OCT was found to be 18.3° ± 3.1° (mean ± standard deviation). The cross-sectional area was 0.65 ± 0.23 cm2. The INV angle measured by endoscopy was 18.8° ± 6.9°. There was no statistically significant difference between endoscopy and OCT concerning the mean INV angle (P = .778), but there was a significant difference in test precision (coefficient of variance 50% vs. 15%; P < .001). Conclusions LR-OCT proved to be a fast and easily performed method. OCT could accurately quantify the INV area. The values of the angle and the cross-sectional area of the INV were reproducible and correlated well with the data seen with other methods. Changes in size could be reliably delineated. Endoscopy showed similar values but was significantly less precise. PMID:26599137

  19. Imaging Fourier-transform spectrometer measurements of a turbulent nonpremixed jet flame.

    PubMed

    Harley, Jacob L; Rankin, Brent A; Blunck, David L; Gore, Jay P; Gross, Kevin C

    2014-04-15

    This work presents recent measurements of a CH4/H2/N2 turbulent nonpremixed jet flame using an imaging Fourier-transform spectrometer (IFTS). Spatially resolved (128×192 pixels, 0.72  mm/pixel) mean radiance spectra were collected between 1800  cm(-1)≤ν˜≤4500  cm(-1) (2.22  μm≤λ≤5.55  μm) at moderate spectral resolution (δν=16  cm(-1), δλ=20  nm) spanning the visible flame. Higher spectral-resolution measurements (δν=0.25  cm(-1), δλ=0.3  nm) were also captured on a smaller window (8×192) at 20, 40, and 60 diameters above the jet exit and reveal the rotational fine structure associated with various vibrational transitions in CH4, CO2, CO, and H2O. These new imaging measurements compare favorably with existing spectra acquired at select flame locations, demonstrating the capability of IFTS for turbulent combustion studies. PMID:24978990

  20. Compact snapshot birefringent imaging Fourier transform spectrometer for remote sensing and endoscopy

    NASA Astrophysics Data System (ADS)

    Kudenov, Michael W.; Banerjee, Bhaskar; Chan, Victoria C.; Dereniak, Eustace L.

    2012-09-01

    The design and implementation of a compact multiple-image Fourier transform spectrometer (FTS) is presented. Based on the multiple-image FTS originally developed by A. Hirai, the presented device offers significant advantages over his original implementation. Namely, its birefringent nature results in a common-path interferometer which makes the spectrometer insensitive to vibration. Furthermore, it enables the potential of making the instrument ultra-compact, thereby improving the portability of the sensor. The theory of the birefringent FTS is provided, followed by details of its specific embodiment. A laboratory proof of concept of the sensor, designed and developed at the Optical Detection Lab, is also presented. Spectral measurements of laboratory sources are provided, including measurements of light-emitting diodes and gas-discharge lamps. These spectra are verified against a calibrated Ocean Optics USB2000 spectrometer. Other data were collected outdoors and of a rat esophagus, demonstrating the sensor's ability to resolve spectral signatures in both standard outdoor lighting and environmental conditions, as well as in fluorescence spectroscopy.

  1. Design considerations for the development of a space qualification Short Wavelength Imaging Fourier Transform Spectrometer (SWIFTS)

    SciTech Connect

    Abbink, R.E.

    1997-06-01

    This document is the final report on work performed at Sandia National Laboratories during FY 1992 and 1993 for a Laboratory Directed Research and Development (LDRD) program to look at problems associated with the design and long term operation of a short wavelength imaging Fourier Transform (FT) spectrometer for use in space. In attempts to answer two fundamental questions: is a FT spectrometer with a resolution of 1 cm{sup {minus}1} covering the silicon detector wavelength range of 0.4 to 1.1 microns feasible in a long life space instrument and, if so, is it the best method of obtaining the desired information? Emphasis has been on identifying methods which minimize reliance on precision mechanical alignment and precise velocity control. An important consideration has also been to develop methods which will be compatible with a variety of self-scanning solid state imaging devices. A breadboard instrument was constructed using cube corner retroreflectors and a laser diode position reference. Some preliminary results are reported. This work is primarily intended to act as an aid to engineers at Sandia who wish to pursue the fabrication of a flight qualified instrument. The theoretical parts are intended to be somewhat tutorial in nature to aid the engineer who is not familiar with FT spectroscopy.

  2. First imaging Fourier-transform spectral measurements of detonation in an internal combustion engine

    NASA Astrophysics Data System (ADS)

    Gross, Kevin C.; Borel, Chris; White, Allen; Sakai, Stephen; DeVasher, Rebecca; Perram, Glen P.

    2010-08-01

    The Telops Hyper-Cam midwave (InSb 1.5-5.5μm) imaging Fourier-transformspectrometer (IFTS) observed repeated detonations in an ethanol-powered internal combustion (IC) engine. The IC engine is aMegatech Corporation MEG 150 with a 1in. bore, 4in. stroke, and a compression ratio of 3 : 1. The IC combustion cylinder is made from sapphire permitting observation in the visible and infrared. From a distance of 3m, the IFTS imaged the combustion cylinder on a 64×32 pixel array with each pixel covering a 0.1×0.1cm2 area. More than 14,000 interferograms were collected at a rate of 16Hz. The maximum optical path difference of the interferograms was 0.017cm corresponding to an unapodized spectral resolution of 36cm-1. Engine speed was varied between 600-1200RPM to de-correlate the observation time scale from the occurrence of detonations. A method is devised to process the ensemble of interferograms which takes advantage of the DC component so that the time history of the combustion spectrum can be recovered at each pixel location. Preliminary results of this analysis will be presented.

  3. Characterizing and overcoming spectral artifacts in imaging Fourier-transform spectroscopy of turbulent exhaust plumes

    NASA Astrophysics Data System (ADS)

    Moore, Elizabeth A.; Gross, Kevin C.; Bowen, Spencer J.; Perram, Glen P.; Chamberland, Martin; Farley, Vincent; Gagnon, Jean-Philippe; Lagueux, Philippe; Villemaire, André

    2009-05-01

    The midwave and shortwave infrared regions of the electromagnetic spectrum contain rich information enabling the characterization of hot, rapid events such as explosions, engine plumes, flares and other combustion events. High-speed sensors are required to analyze the content of such rapidly evolving targets. Cameras with high frame rates and non-imaging spectrometers with high data rates are typically used; however the information from these two types of instruments must be later fused to enable characterization of the transient targets. Imaging spectrometers have recently become commercially available for general scientific use, thus enabling simultaneous capture of both spatial and spectral information without co-registration issues. However, their use against rapidly-varying sources has traditionally been considered problematic, for even at moderate spatial and spectral resolutions the time to acquire a single spectrum can be long compared to the timescales associated with combustion events. This paper demonstrates that imaging Fourier-transform spectroscopy (IFTS) can successfully characterize the turbulent combustion exhaust from a turbojet engine. A Telops Hyper-Cam IFTS collected hyperspectral video from a Turbine Technologies SR-30 turbojet engine with a spectral resolution of δν = 1/cm-1 on a 200×64 pixel sub-window at a rate of 0.3 Hz. Scene-change artifacts (SCAs) are present in the spectra; however, the stochastic fluctuations in source intensity translate into high-frequency "noise." Temporal averaging affords a significant reduction of the noise associated with SCAs. Emission from CO and CO2 are clearly recognized in the averaged spectra, and information about their temperature and relative concentrations is evident.

  4. Spectrum reconstruction using relative-deviation-based kernel regression in temporally and spatially modulated Fourier transform imaging spectrometer.

    PubMed

    Huang, Fengzhen; Yuan, Yan; Li, Jingzhen; Cao, Jun

    2015-08-01

    During the temporally and spatially modulated Fourier transform imaging spectrometer push-broom scanning process, the motion state of the spectrometer platform can vary. Thus, the target interferogram obtained from the image sequence deviates from the ideal interferogram obtained using high platform stability. The recovered target spectrum will not reflect the true target characteristics. We adopted target tracking to acquire the target position in the image sequence via a proposed kernel regression, with a relative deviation method for determining the target intensities, and the recovery of the spectrogram using the nonuniform fast Fourier transform algorithm. We tested our algorithm on simulated and experimentally obtained aerial images and, from comparison with accurate spectrograms, demonstrate the effectiveness of the proposed method. PMID:26368088

  5. Design of a high aperture compression ratio, dual-band static Fourier transform imaging spectrometer for remote sensing

    NASA Astrophysics Data System (ADS)

    Zou, Chun-bo; Hu, Bing-Liang; Li, Li-bo; Bai, Qing-Lan; Sun, Xin; Li, Ran; Yang, Jian-Feng

    2014-11-01

    A novel dual-band static Fourier transform imaging spectrometer was designed, which was the spatio-temporally modulated imaging Fourier transform spectrometer based on Sagnac interferometer. The approach represented a simplification and mass reduction over the traditional approach. It could obtain two-dimensional spatial images and one dimensional spectral image in two bands simultaneously. The two bands was separated through a dichroic prism and imaging in two detectors. one band was the visible and near infrared band, with the spectral range 400nm-1000nm and spectral resolution 187.5 wave numbers; the other was the short wave infrared band, with the spectral range 1000nm- 2500nm and spectral resolution 150 wave numbers. To reduce the size of the Interferometer, a high aperture compression ratio telescope system was designed before. The optical aperture was compressed to 1/10, and the volume of interferometer was reduced to 1/1000. For the convenience of engineering implementation, the telescope was composed of two no-aberration object lens: fore-lens and Collimating lens. The two band imaging spectrometers shared the primary lens and the second lens of the fore-lens and use their own collimating lens, interferometers and Fourier transform lens. The collimating lens and the Fourier transform lens of each spectrometer could be designed to the same structural style and parameters. The both spectrometers had a focal length of 1000mm, F number of 5, FOV(field of view) of 1°. Moreover, both image qualities were close to the diffraction limit, the distortion was less than 2%. The advantage of the instrument was that dual band spectral image could be acquired at the same time and the interferometer was miniaturized extremely in the case of unchanged technical indicators.

  6. Fourier plane colorimetric sensing using broadband imaging of surface plasmons and application to biosensing

    NASA Astrophysics Data System (ADS)

    Arora, P.; Krishnan, A.

    2015-12-01

    We demonstrate an optical technique for refractive index and thickness sensing of sub-wavelength-thick dielectric analytes. The technique utilizes the broadband, multimode, directional leakage radiation arising from the excitation of hybrid mode surface plasmons (SP) on low aspect ratio periodic plasmonic substrates with period ≈λ. The approach requires relaxed fabrication tolerances compared to extra ordinary transmission-based sensing techniques, wherein minor shifts in the fabricated dimensions result in a very large change from the designed resonant wavelength. We show that refractive index perturbations due to about 10-nm-thick dielectric can be captured optically by the usage of carefully designed plasmonic substrates, a halogen lamp source, free-space optical components, polarizers, and a low-end, consumer-grade charge coupled device camera. The plasmonic substrates were designed for converting the signature of hybrid mode SP excitation into a transmission peak by utilizing a thin homogeneous metal layer sandwiched between the periodic plasmonic structures and the substrate. The resonance is highly sensitive to the refractive index and thickness of the analyte superstrate. The excitation of hybrid mode SP results in a polarization rotation of 90° of the leaked radiation at resonant wavelength. In order to eliminate the problem of image registration (i.e., placing the same feature in the same pixel of the image, for comparison before and after a change in refractive index) for sensing, we perform the color analysis in the Fourier plane. The change in color of the bright emitted spot with highest momentum, corresponding to the leakage of fundamental SP mode, was used to measure the changes in refractive index, whereas the number and color of spots of lower momenta, corresponding to higher-order Fabry Perot modes, was used to measure the variation in thickness. We further show that the Fourier plane analysis can also be used to sense the index of thicker

  7. Fourier plane colorimetric sensing using broadband imaging of surface plasmons and application to biosensing

    SciTech Connect

    Arora, P.; Krishnan, A.

    2015-12-21

    We demonstrate an optical technique for refractive index and thickness sensing of sub-wavelength-thick dielectric analytes. The technique utilizes the broadband, multimode, directional leakage radiation arising from the excitation of hybrid mode surface plasmons (SP) on low aspect ratio periodic plasmonic substrates with period ≈λ. The approach requires relaxed fabrication tolerances compared to extra ordinary transmission-based sensing techniques, wherein minor shifts in the fabricated dimensions result in a very large change from the designed resonant wavelength. We show that refractive index perturbations due to about 10-nm-thick dielectric can be captured optically by the usage of carefully designed plasmonic substrates, a halogen lamp source, free-space optical components, polarizers, and a low-end, consumer-grade charge coupled device camera. The plasmonic substrates were designed for converting the signature of hybrid mode SP excitation into a transmission peak by utilizing a thin homogeneous metal layer sandwiched between the periodic plasmonic structures and the substrate. The resonance is highly sensitive to the refractive index and thickness of the analyte superstrate. The excitation of hybrid mode SP results in a polarization rotation of 90° of the leaked radiation at resonant wavelength. In order to eliminate the problem of image registration (i.e., placing the same feature in the same pixel of the image, for comparison before and after a change in refractive index) for sensing, we perform the color analysis in the Fourier plane. The change in color of the bright emitted spot with highest momentum, corresponding to the leakage of fundamental SP mode, was used to measure the changes in refractive index, whereas the number and color of spots of lower momenta, corresponding to higher-order Fabry Perot modes, was used to measure the variation in thickness. We further show that the Fourier plane analysis can also be used to sense the index of thicker

  8. Phase calibration target for quantitative phase imaging with ptychography.

    PubMed

    Godden, T M; Muñiz-Piniella, A; Claverley, J D; Yacoot, A; Humphry, M J

    2016-04-01

    Quantitative phase imaging (QPI) utilizes refractive index and thickness variations that lead to optical phase shifts. This gives contrast to images of transparent objects. In quantitative biology, phase images are used to accurately segment cells and calculate properties such as dry mass, volume and proliferation rate. The fidelity of the measured phase shifts is of critical importance in this field. However to date, there has been no standardized method for characterizing the performance of phase imaging systems. Consequently, there is an increasing need for protocols to test the performance of phase imaging systems using well-defined phase calibration and resolution targets. In this work, we present a candidate for a standardized phase resolution target, and measurement protocol for the determination of the transfer of spatial frequencies, and sensitivity of a phase imaging system. The target has been carefully designed to contain well-defined depth variations over a broadband range of spatial frequencies. In order to demonstrate the utility of the target, we measure quantitative phase images on a ptychographic microscope, and compare the measured optical phase shifts with Atomic Force Microscopy (AFM) topography maps and surface profile measurements from coherence scanning interferometry. The results show that ptychography has fully quantitative nanometer sensitivity in optical path differences over a broadband range of spatial frequencies for feature sizes ranging from micrometers to hundreds of micrometers. PMID:27137054

  9. ORBS: A data reduction software for the imaging Fourier transform spectrometers SpIOMM and SITELLE

    NASA Astrophysics Data System (ADS)

    Martin, T.; Drissen, L.; Joncas, G.

    2012-09-01

    SpIOMM (Spectromètre-Imageur de l'Observatoire du Mont Mégantic) is still the only operational astronomical Imaging Fourier Transform Spectrometer (IFTS) capable of obtaining the visible spectrum of every source of light in a field of view of 12 arc-minutes. Even if it has been designed to work with both outputs of the Michelson interferometer, up to now only one output has been used. Here we present ORBS (Outils de Réduction Binoculaire pour SpIOMM/SITELLE), the reduction software we designed in order to take advantage of the two output data. ORBS will also be used to reduce the data of SITELLE (Spectromètre-Imageur pour l' Étude en Long et en Large des raies d' Émissions) { the direct successor of SpIOMM, which will be in operation at the Canada-France- Hawaii Telescope (CFHT) in early 2013. SITELLE will deliver larger data cubes than SpIOMM (up to 2 cubes of 34 Go each). We thus have made a strong effort in optimizing its performance efficiency in terms of speed and memory usage in order to ensure the best compliance with the quality characteristics discussed with the CFHT team. As a result ORBS is now capable of reducing 68 Go of data in less than 20 hours using only 5 Go of random-access memory (RAM).

  10. [Stability analysis of on-board calibration system of spatially modulated imaging Fourier transform spectrometer].

    PubMed

    Gao, Jingz; Ji, Zhong-Ying; Wang, Zhong-Hou; Cui, Yan

    2010-04-01

    Spatially modulated imaging Fourier transform spectrometer (SMIFTS) was an instrument that depended on interference, and after calibration, the reconstruction spectrum can quantificationally reflect the diffuse reflection of target under sunshine. On-board calibration of SMIFTS confirmed the change of SMIFTS according to relative spectrum calibration, inspected long-time attenuation of SMIFTS optical system, and corrected export data of SMIFTS. According to the requirement of remote sensor application, it must stay in vacuum environment for a long time. As a radiant standard, the stability of lamp-house in long time is the most important characteristic of on-board calibration system. By calculation and experimentation, analyses of on-board calibration of SMIFTS, and testing spaceflight environment characteristic of on-board calibration, the difficulty in the key parts of on-board calibration of SMIFTS such as lamp-house, spectrum filter and integrating sphere was solved. According to the radiation-time stability testing for lamp-house and optics, particle-radiation testing, environmental-mechanics testing and hot vacuum examination, good result was obtained. By whole-aperture and part-field comparative wavelength calibration, the spectrum curve and before-launch interferogram were obtained. After comparison with reconstruction spectrum under different condition, the stability and credibility of SMIFTS on-board calibration system was proved. PMID:20545151

  11. First results and current development of SpIOMM: an imaging Fourier transform spectrometer for astronomy

    NASA Astrophysics Data System (ADS)

    Bernier, A.-P.; Grandmont, F.; Rochon, J.-F.; Charlebois, M.; Drissen, L.

    2006-06-01

    We present an overview of SpIOMM, an Imaging Fourier Transform Spectrometer (IFTS) for astronomy developed at University Laval in collaboration with ABB, INO and the Canadian Space Agency. SpIOMM, attached to the 1.6 meter (f/8) telescope at the Observatoire du mont Megantic in Quebec. It is a Michelson-type interferometer capable of obtaining the visible spectrum (from 350 nm to 900 nm) of every light source within its 12 arcminute circular field of view. This design will allow the correction of variable sky transmission. It consists of a dual output port and the total throughput is exploited by two CCDs used as detectors. We present the concept and design of this unique instrument. A metrology system combined with a dynamic alignment assures a good sampling and mirror alignment during the entire acquisition sequence. This particular servo control is explained and demonstrated and its capabilities and performance are discussed. We introduce the use of specific bandpass filters centered on the most important groups of emission lines which, when combined with spectral folding algorithms, allows us to reach high spectral resolution (R = 25 000, or 1 cm -1). Astronomical data collected by SpIOMM in 2004-2005 are also presented.

  12. Fourier transform infrared spectroscopic imaging of cardiac tissue to detect collagen deposition after myocardial infarction

    NASA Astrophysics Data System (ADS)

    Cheheltani, Rabee; Rosano, Jenna M.; Wang, Bin; Sabri, Abdel Karim; Pleshko, Nancy; Kiani, Mohammad F.

    2012-05-01

    Myocardial infarction often leads to an increase in deposition of fibrillar collagen. Detection and characterization of this cardiac fibrosis is of great interest to investigators and clinicians. Motivated by the significant limitations of conventional staining techniques to visualize collagen deposition in cardiac tissue sections, we have developed a Fourier transform infrared imaging spectroscopy (FT-IRIS) methodology for collagen assessment. The infrared absorbance band centered at 1338 cm-1, which arises from collagen amino acid side chain vibrations, was used to map collagen deposition across heart tissue sections of a rat model of myocardial infarction, and was compared to conventional staining techniques. Comparison of the size of the collagen scar in heart tissue sections as measured with this methodology and that of trichrome staining showed a strong correlation (R=0.93). A Pearson correlation model between local intensity values in FT-IRIS and immuno-histochemical staining of collagen type I also showed a strong correlation (R=0.86). We demonstrate that FT-IRIS methodology can be utilized to visualize cardiac collagen deposition. In addition, given that vibrational spectroscopic data on proteins reflect molecular features, it also has the potential to provide additional information about the molecular structure of cardiac extracellular matrix proteins and their alterations.

  13. Study on optical design of all-reflective Fourier transform imaging spectrometer

    NASA Astrophysics Data System (ADS)

    Liang, Min-yong; Liao, Ning-fang

    2008-03-01

    The Fourier Transform Imaging Spectrometer (FTIS) used for remote sensing has been developed rapidly in the past two decades. Most of the Temporarily Modulated FTIS and the Spatially Modulated FTIS include a beam splitter structure, such as Sagnac prism or double refraction crystal beam splitter. The material of the beam splitter which is optical glass, crystalline materials or plastic optical materials all have the transmission limitation, so the spectrum range would be limited; the transparent material also would cause the chromatic aberration. We presented an all-reflective optical structure based on the Fresnel double mirror interference structure that could overcome these two shortcomings. The three-mirror anastigmat (TMA) telescope is employed to realize all-reflective fore-optics, it has a compact structure, wide field of view (FOV) and competent modulation transfer function (MTF). An abaxial parabolic-cylindrical mirror has been designed to focus the interference fringes onto the plane focal array (FPA) which would increase the signal to noise ratio (SNR).

  14. Vibrational mapping of sinonasal lesions by Fourier transform infrared imaging spectroscopy.

    PubMed

    Giorgini, Elisabetta; Sabbatini, Simona; Conti, Carla; Rubini, Corrado; Rocchetti, Romina; Re, Massimo; Vaccari, Lisa; Mitri, Elisa; Librando, Vito

    2015-12-01

    Fourier transform infrared imaging (FTIRI) is a powerful tool for analyzing biochemical changes in tumoral tissues. The head and neck region is characterized by a great variety of lesions, with different degrees of malignancy, which are often difficult to diagnose. Schneiderian papillomas are sinonasal benign neoplasms arising from the Schneiderian mucosa; they can evolve into malignant tumoral lesions (squamous cell carcinoma). In addition, they can sometimes be confused with the more common inflammatory polyps. Therefore, an early and definitive diagnosis of this pathology is mandatory. Progressing in our research on the study of oral cavity lesions, 15 sections consisting of inflammatory sinonasal polyps, benign Schneiderian papillomas, and sinonasal undifferentiated carcinomas were analyzed using FTIRI. To allow a rigorous description of these pathologies and to gain objective diagnosis, the epithelial layer and the adjacent connective tissue of each section were separately investigated by following a multivariate analysis approach. According to the nature of the lesion, interesting modifications were detected in the average spectra of the different tissue components, above all in the lipid and protein patterns. Specific band-area ratios acting as spectral markers of the different pathologies were also highlighted. PMID:26677069

  15. Cryo-EM Image Alignment Based on Nonuniform Fast Fourier Transform

    PubMed Central

    Yang, Zhengfan; Penczek, Pawel A.

    2008-01-01

    In single particle analysis, two-dimensional (2-D) alignment is a fundamental step intended to put into register various particle projections of biological macromolecules collected at the electron microscope. The efficiency and quality of three-dimensional (3-D) structure reconstruction largely depends on the computational speed and alignment accuracy of this crucial step. In order to improve the performance of alignment, we introduce a new method that takes advantage of the highly accurate interpolation scheme based on the gridding method, a version of the nonuniform Fast Fourier Transform, and utilizes a multi-dimensional optimization algorithm for the refinement of the orientation parameters. Using simulated data, we demonstrate that by using less than half of the sample points and taking twice the runtime, our new 2-D alignment method achieves dramatically better alignment accuracy than that based on quadratic interpolation. We also apply our method to image to volume registration, the key step in the single particle EM structure refinement protocol. We find that in this case the accuracy of the method not only surpasses the accuracy of the commonly used real-space implementation, but results are achieved in much shorter time, making gridding-based alignment a perfect candidate for efficient structure determination in single particle analysis. PMID:18499351

  16. Vibrational mapping of sinonasal lesions by Fourier transform infrared imaging spectroscopy

    NASA Astrophysics Data System (ADS)

    Giorgini, Elisabetta; Sabbatini, Simona; Conti, Carla; Rubini, Corrado; Rocchetti, Romina; Re, Massimo; Vaccari, Lisa; Mitri, Elisa; Librando, Vito

    2015-12-01

    Fourier transform infrared imaging (FTIRI) is a powerful tool for analyzing biochemical changes in tumoral tissues. The head and neck region is characterized by a great variety of lesions, with different degrees of malignancy, which are often difficult to diagnose. Schneiderian papillomas are sinonasal benign neoplasms arising from the Schneiderian mucosa; they can evolve into malignant tumoral lesions (squamous cell carcinoma). In addition, they can sometimes be confused with the more common inflammatory polyps. Therefore, an early and definitive diagnosis of this pathology is mandatory. Progressing in our research on the study of oral cavity lesions, 15 sections consisting of inflammatory sinonasal polyps, benign Schneiderian papillomas, and sinonasal undifferentiated carcinomas were analyzed using FTIRI. To allow a rigorous description of these pathologies and to gain objective diagnosis, the epithelial layer and the adjacent connective tissue of each section were separately investigated by following a multivariate analysis approach. According to the nature of the lesion, interesting modifications were detected in the average spectra of the different tissue components, above all in the lipid and protein patterns. Specific band-area ratios acting as spectral markers of the different pathologies were also highlighted.

  17. Fuzzy Logic Classification of Imaging Laser Desorption Fourier Transform Mass Spectrometry Data

    SciTech Connect

    Timothy R. McJunkin; Jill R. Scott

    2008-06-01

    The fuzzy logic method is applied to classification of mass spectra obtained with an imaging internal source Fourier transform mass spectrometer (I2LD-FTMS). Traditionally, an operator uses the relative abundance of ions with specific mass-to-charge (m/z) ratios to categorize spectra. An operator does this by comparing the spectrum of m/z versus abundance of an unknown sample against a library of spectra from known samples. Automated positioning and acquisition allow the I2LD-FTMS to acquire data from very large grids, which would require classification of up to 3600 spectra per hour to keep pace with the acquisition. The tedious job of classifying numerous spectra generated in an I2LD-FTMS imaging application can be replaced by a fuzzy rule base if the cues an operator uses can be encapsulated. Appropriate methods for assigning fuzzy membership values for inputs (e.g., mass spectrum abundances) and choice of fuzzy inference operators to translate linguistic antecedent into confidence values for the consequence (or in this case the classification) is followed by using the maximum confidence and a necessary minimum threshold for making a crisp decision. This paper also describes a method for gathering statistics on ions, which are not currently used in the rule base, but which may be candidates for making the rule base more accurate and complete or to form new rule bases based on data obtained from known samples. A spatial method for classifying spectra with low membership values, based on neighboring sample classifications, is also presented.

  18. Filling factor characteristics of masking phase-only hologram on the quality of reconstructed images

    NASA Astrophysics Data System (ADS)

    Deng, Yuanbo; Chu, Daping

    2016-03-01

    The present study evaluates the filling factor characteristics of masking phase-only hologram on its corresponding reconstructed image. A square aperture with different filling factor is added on the phase-only hologram of the target image, and average cross-section intensity profile of the reconstructed image is obtained and deconvolved with that of the target image to calculate the point spread function (PSF) of the image. Meanwhile, Lena image is used as the target image and evaluated by metrics RMSE and SSIM to assess the quality of reconstructed image. The results show that the PSF of the image agrees with the PSF of the Fourier transform of the mask, and as the filling factor of the mask decreases, the width of PSF increases and the quality of reconstructed image drops. These characteristics could be used in practical situations where phase-only hologram is confined or need to be sliced or tiled.

  19. Security enhancement of a phase-truncation based image encryption algorithm.

    PubMed

    Wang, Xiaogang; Zhao, Daomu

    2011-12-20

    The asymmetric cryptosystem, which is based on phase-truncated Fourier transforms (PTFTs), can break the linearity of conventional systems. However, it has been proven to be vulnerable to a specific attack based on iterative Fourier transforms when the two random phase masks are used as public keys to encrypt different plaintexts. An improvement from the asymmetric cryptosystem may be taken by relocating the amplitude values in the output plane. In this paper, two different methods are adopted to realize the amplitude modulation of the output image. The first one is to extend the PTFT-based asymmetrical cryptosystem into the anamorphic fractional Fourier transform domain directly, and the second is to add an amplitude mask in the Fourier plane of the encryption scheme. Some numerical simulations are presented to prove the good performance of the proposed cryptosystems. PMID:22193194

  20. Sub-pixel spatial resolution wavefront phase imaging

    NASA Technical Reports Server (NTRS)

    Stahl, H. Philip (Inventor); Mooney, James T. (Inventor)

    2012-01-01

    A phase imaging method for an optical wavefront acquires a plurality of phase images of the optical wavefront using a phase imager. Each phase image is unique and is shifted with respect to another of the phase images by a known/controlled amount that is less than the size of the phase imager's pixels. The phase images are then combined to generate a single high-spatial resolution phase image of the optical wavefront.

  1. Time-domain surface profile imaging via a hyperspectral Fourier transform spectrometer.

    PubMed

    Dupuis, Julia Rentz; Unlü, M Selim

    2008-06-15

    We describe a method for time-domain surface profile measurements via white-light reflection spectroscopy using a hyperspectral Fourier transform spectrometer (HS-FTS). This technique measures the frequency of the spectral modulation of reflected light from a multilayer optical surface and reports the spatially resolved optical thickness. Owing to the Fourier relationship, the Fourier transform spectrometer manifests this spectral modulation as temporal satellites in interferogram space. We show that measurement of the positions of these satellites can be used to reconstruct the optical thickness profile over a surface using the HS-FTS. PMID:18552962

  2. Balloon Demonstrator Imaging Fourier Transform Spectrometer for the Measurement of Methane and Carbon Dioxide over the Arctic

    NASA Astrophysics Data System (ADS)

    Vaziri Z., Zahra; McElroy, Charles T.; Feng, Keh-Harng; Moeini, Omid; Walker, Kaley A.; Martin, Randall; Grandmont, Frederic J.

    2015-04-01

    Arctic climate is changing more rapidly than expected. Multi-year ice is melting and opening the way for shipping and exploration activity for natural resources which in turn increases air pollution. Observing greenhouse gases on a global scale is essential to monitor climate change, especially in the Arctic. Several space missions monitor trace gasses but are in low-earth, sun synchronous orbits and do not have a 24/7 view of northern latitudes. The Canadian Space Agency (CSA), along with other Canadian government departments, is proposing the Polar Communications and Weather (PCW) satellite to provide weather, communication and atmospheric composition information over the Arctic. The use of two satellites in out-of-phase highly elliptical three-apogee orbits with an apogee at ~40,000 km over the Arctic, will provide continuous quasi-geostationary viewing of the northern latitudes. The planned meteorological instrument for the PCW mission is a 21-channel spectral imager with UV, visible, NIR and MIR channels, similar to MODIS and ABI, capable of measuring several different trace gasses. This paper will focus on the development of an Imaging Fourier Transform Spectrometer (IFTS) to be flown on a high-altitude balloon to demonstrate the capacity to monitor methane and carbon dioxide in the Arctic as part of the PHEOS-WCA (Polar Highly Elliptical Orbit Science - Weather, Climate and Air quality) instrument suit; a science complement to the PCW mission. Funding through the CSA Flights for the Advancement of Science and Technology (FAST) program is in place to develop the demonstrator IFTS to show that measurements of methane and carbon dioxide can be collected from space in the 1.6 µm band. The characteristics of the instrument and plans for the balloon flight will be discussed and details of the PCW mission and PHEOS-WCA component will be presented. The authors acknowledge support of the PHEOS-WCA science team.

  3. Spatial-phase code-division multiple-access system with multiplexed Fourier holography switching for reconfigurable optical interconnection.

    PubMed

    Takasago, K; Takekawa, M; Shirakawa, A; Kannari, F

    2000-05-10

    A new, to our knowledge, space-variant optical interconnection system based on a spatial-phase code-division multiple-access technique with multiplexed Fourier holography is described. In this technique a signal beam is spread over wide spatial frequencies by an M-sequence pseudorandom phase code. At a receiver side a selected signal beam is properly decoded, and at the same time its spatial pattern is shaped with a Fourier hologram, which is recorded by light that is encoded with the same M-sequence phase mask as the desired signal beam and by light whose spatial beam pattern is shaped to a signal routing pattern. Using the multiplexed holography, we can simultaneously route multisignal flows into individually specified receiver elements. The routing pattern can also be varied by means of switching the encoding phase code or replacing the hologram. We demonstrated a proof-of-principle experiment with a doubly multiplexed hologram that enables simultaneous routing of two signal beams. Using a numerical model, we showed that the proposed scheme can manage more than 250 routing patterns for one signal flow with one multiplexed hologram at a signal-to-noise ratio of ~5. PMID:18345134

  4. Reconstruction of color biomedical images by means of quaternion generic Jacobi-Fourier moments in the framework of polar pixels.

    PubMed

    Camacho-Bello, César; Padilla-Vivanco, Alfonso; Toxqui-Quitl, Carina; Báez-Rojas, José Javier

    2016-01-01

    A detailed analysis of the quaternion generic Jacobi-Fourier moments (QGJFMs) for color image description is presented. In order to reach numerical stability, a recursive approach is used during the computation of the generic Jacobi radial polynomials. Moreover, a search criterion is performed to establish the best values for the parameters [Formula: see text] and [Formula: see text] of the radial Jacobi polynomial families. Additionally, a polar pixel approach is taken into account to increase the numerical accuracy in the calculation of the QGJFMs. To prove the mathematical theory, some color images from optical microscopy and human retina are used. Experiments and results about color image reconstruction are presented. PMID:27014716

  5. Imaging of the three-dimensional alveolar structure and the alveolar mechanics of a ventilated and perfused isolated rabbit lung with Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Popp, Alexander; Wendel, Martina; Knels, Lilla; Koch, T.; Koch, Edmund

    2006-01-01

    In this feasibility study, Fourier domain optical coherence tomography (FDOCT) is used for visualizing the 3-D structure of fixated lung parenchyma and to capture real-time cross sectional images of the subpleural alveolar mechanics in a ventilated and perfused isolated rabbit lung. The compact and modular setup of the FDOCT system allows us to image the first 500 µm of subpleural lung parenchyma with a 3-D resolution of 16×16×8 µm (in air). During mechanical ventilation, real-time cross sectional FDOCT images visualize the inflation and deflation of alveoli and alveolar sacks (acini) in successive images of end-inspiratory and end-expiratory phase. The FDOCT imaging shows the relation of local alveolar mechanics to the setting of tidal volume (VT), peak airway pressure, and positive end-expiratory pressure (PEEP). Application of PEEP leads to persistent recruitment of alveoli and acini in the end-expiratory phase, compared to ventilation without PEEP where alveolar collapse and reinflation are observed. The imaging of alveolar mechanics by FDOCT will help to determine the amount of mechanical stress put on the alveolar walls during tidal ventilation, which is a key factor in understanding the development of ventilator induced lung injury (VILI).

  6. Imaging of the three-dimensional alveolar structure and the alveolar mechanics of a ventilated and perfused isolated rabbit lung with Fourier domain optical coherence tomography.

    PubMed

    Popp, Alexander; Wendel, Martina; Knels, Lilla; Koch, Thea; Koch, Edmund

    2006-01-01

    In this feasibility study, Fourier domain optical coherence tomography (FDOCT) is used for visualizing the 3-D structure of fixated lung parenchyma and to capture real-time cross sectional images of the subpleural alveolar mechanics in a ventilated and perfused isolated rabbit lung. The compact and modular setup of the FDOCT system allows us to image the first 500 microm of subpleural lung parenchyma with a 3-D resolution of 16 x 16 x 8 microm (in air). During mechanical ventilation, real-time cross sectional FDOCT images visualize the inflation and deflation of alveoli and alveolar sacks (acini) in successive images of end-inspiratory and end-expiratory phase. The FDOCT imaging shows the relation of local alveolar mechanics to the setting of tidal volume (VT), peak airway pressure, and positive end-expiratory pressure (PEEP). Application of PEEP leads to persistent recruitment of alveoli and acini in the end-expiratory phase, compared to ventilation without PEEP where alveolar collapse and reinflation are observed. The imaging of alveolar mechanics by FDOCT will help to determine the amount of mechanical stress put on the alveolar walls during tidal ventilation, which is a key factor in understanding the development of ventilator induced lung injury (VILI). PMID:16526892

  7. Fourier Transform Methods Applied To The Analysis Of Microphotometric Images Of Histologic Sections

    NASA Astrophysics Data System (ADS)

    Dytch, Harvey E.; Wied, George L.

    1989-06-01

    Implementation of one-dimensional Fourier transform techniques for the analysis of histologic sections is discussed, as is the motivation for their use. Features of the frequency domain representation derived by such a transform are shown to be related to several important diagnostic clues. The interpretation of the Fourier magnitude spectrum in histologically relevant terms is examined by means of Fourier transforms of idealized tissue simulations. Some of the perturbations of these ideal spectra produced by biologic reality are discussed. Three classic types of cervical epithelial tissue are modeled, and their representation as Fourier magnitude spectra interpreted in the light of the previous results: characteristic frequency domain signatures are obtained for each. It is concluded that these techniques may provide diagnostically important objective measures, and may be applied to otherwise intractable histologic specimens with crowded and overlapping nuclei.

  8. Lossless compression of the geostationary imaging Fourier transform spectrometer (GIFTS) data via predictive partitioned vector quantization

    NASA Astrophysics Data System (ADS)

    Huang, Bormin; Wei, Shih-Chieh; Huang, Allen H.-L.; Smuga-Otto, Maciek; Knuteson, Robert; Revercomb, Henry E.; Smith, William L., Sr.

    2007-09-01

    The Geostationary Imaging Fourier Transform Spectrometer (GIFTS), as part of NASA's New Millennium Program, is an advanced instrument to provide high-temporal-resolution measurements of atmospheric temperature and water vapor, which will greatly facilitate the detection of rapid atmospheric changes associated with destructive weather events, including tornadoes, severe thunderstorms, flash floods, and hurricanes. The Committee on Earth Science and Applications from Space under the National Academy of Sciences recommended that NASA and NOAA complete the fabrication, testing, and space qualification of the GIFTS instrument and that they support the international effort to launch GIFTS by 2008. Lossless data compression is critical for the overall success of the GIFTS experiment, or any other very high data rate experiment where the data is to be disseminated to the user community in real-time and archived for scientific studies and climate assessment. In general, lossless data compression is needed for high data rate hyperspectral sounding instruments such as GIFTS for (1) transmitting the data down to the ground within the bandwidth capabilities of the satellite transmitter and ground station receiving system, (2) compressing the data at the ground station for distribution to the user community (as is traditionally performed with GOES data via satellite rebroadcast), and (3) archival of the data without loss of any information content so that it can be used in scientific studies and climate assessment for many years after the date of the measurements. In this paper we study lossless compression of GIFTS data that has been collected as part of the calibration or ground based tests that were conducted in 2006. The predictive partitioned vector quantization (PPVQ) is investigated for higher lossless compression performance. PPVQ consists of linear prediction, channel partitioning and vector quantization. It yields an average compression ratio of 4.65 on the GIFTS test

  9. Remote identification and quantification of industrial smokestack effluents via imaging Fourier-transform spectroscopy.

    PubMed

    Gross, Kevin C; Bradley, Kenneth C; Perram, Glen P

    2010-12-15

    Industrial smokestack plume emissions were remotely measured with a midwave infrared (1800-3000 cm(-1)) imaging Fourier-transform spectrometer operating at moderate spatial (128 × 64 with 19.4 × 19.4 cm(2) per pixel) and high spectral (0.25 cm(-1)) resolution over a 20 min period. Strong emissions from CO(2), H(2)O, SO(2), NO, HCl, and CO were observed. A single-layer plume radiative transfer model was used to estimate temperature T and effluent column densities q(i) for each pixel's spectrum immediately above the smokestack exit. Across the stack, temperature was uniform with T = 396.3 ± 1.3 K (mean ± stdev), and each q(i) varied in accordance with the plume path length defined by its cylindrical geometry. Estimated CO(2) and SO(2) volume fractions of 8.6 ± 0.4% and 380 ± 23 ppm(v), respectively, compared favorably with in situ measurements of 9.40 ± 0.03% and 383 ± 2 ppm(v). Total in situ NO(x) concentration (NO + NO(2)) was reported at 120 ± 1 ppm(v). While NO(2) was not spectrally detected, NO was remotely observed with a concentration of 104 ± 7 ppm(v). Concentration estimates for the unmonitored species CO, HCl, and H(2)O were 14.4 ± 0.3 ppm(v), 88 ± 1 ppm(v), and 4.7 ± 0.1%, respectively. PMID:21069951

  10. High-speed all-optical pattern recognition of dispersive Fourier images through a photonic reservoir computing subsystem.

    PubMed

    Mesaritakis, Charis; Bogris, Adonis; Kapsalis, Alexandros; Syvridis, Dimitris

    2015-07-15

    In this Letter, we present and fully model a photonic scheme that allows the high-speed identification of images acquired through the dispersive Fourier technique. The proposed setup consists of a photonic reservoir-computing scheme that is based on the nonlinear response of randomly interconnected InGaAsP microring resonators. This approach allowed classification errors of 0.6%, whereas it alleviates the need for complex high-cost optoelectronic sampling and digital processing. PMID:26176483

  11. A Synthetic Quadrature Phase Detector/Demodulator for Fourier Transform Transform Spectrometers

    NASA Technical Reports Server (NTRS)

    Campbell, Joel

    2008-01-01

    A method is developed to demodulate (velocity correct) Fourier transform spectrometer (FTS) data that is taken with an analog to digital converter that digitizes equally spaced in time. This method makes it possible to use simple low cost, high resolution audio digitizers to record high quality data without the need for an event timer or quadrature laser hardware, and makes it possible to use a metrology laser of any wavelength. The reduced parts count and simplicity implementation makes it an attractive alternative in space based applications when compared to previous methods such as the Brault algorithm.

  12. Light-field-based phase imaging

    NASA Astrophysics Data System (ADS)

    Liu, Jingdan; Xu, Tingfa; Yue, Weirui; Situ, Guohai

    2014-10-01

    Phase contains important information about the diffraction or scattering property of an object, and therefore the imaging of phase is vital to many applications including biomedicine and metrology, just name a few. However, due to the limited bandwidth of image sensors, it is not possible to directly detect the phase of an optical field. Many methods including the Transport of Intensity Equation (TIE) have been well demonstrated for quantitative and non-interferometric imaging of phase. The TIE offers an experimentally simple technique for computing phase quantitatively from two or more defocused images. Usually, the defocused images were experimentally obtained by shifting the camera along the optical axis with slight intervals. Note that light field imaging has the capability to take an image stack focused at different depths by digital refocusing the captured light field of a scene. In this paper, we propose to combine Light Field Microscopy and the TIE method for phase imaging, taking the digital-refocusing advantage of Light Field Microscopy. We demonstrate the propose technique by simulation results. Compare with the traditional camera-shifting technique, light-field imaging allows the capturing the defocused images without any mechanical instability and therefore demonstrate advantage in practical applications.

  13. Design and calibration of a digital Fourier holographic microscope for particle sizing via goniometry and optical scatter imaging in transmission.

    PubMed

    Rossi, Vincent M; Jacques, Steven L

    2016-06-13

    Goniometry and optical scatter imaging have been used for optical determination of particle size based upon optical scattering. Polystyrene microspheres in suspension serve as a standard for system validation purposes. The design and calibration of a digital Fourier holographic microscope (DFHM) are reported. Of crucial importance is the appropriate scaling of scattering angle space in the conjugate Fourier plane. A detailed description of this calibration process is described. Spatial filtering of the acquired digital hologram to use photons scattered within a restricted angular range produces an image. A pair of images, one using photons narrowly scattered within 8 - 15° (LNA), and one using photons broadly scattered within 8 - 39° (HNA), are produced. An image based on the ratio of these two images, OSIR = HNA/LNA, following Boustany et al. (2002), yields a 2D Optical Scatter Image (OSI) whose contrast is based on the angular dependence of photon scattering and is sensitive to the microsphere size, especially in the 0.5-1.0µm range. Goniometric results are also given for polystyrene microspheres in suspension as additional proof of principle for particle sizing via the DFHM. PMID:27410298

  14. White-light quantitative phase imaging unit

    NASA Astrophysics Data System (ADS)

    Baek, YoonSeok; Lee, KyeoReh; Yoon, Jonghee; Kim, Kyoohyun; Park, YongKeun

    2016-05-01

    We introduce the white light quantitative phase imaging unit (WQPIU) as a practical realization of quantitative phase imaging (QPI) on standard microscope platforms. The WQPIU is a compact stand-alone unit which measures sample induced phase delay under white-light illumination. It does not require any modification of the microscope or additional accessories for its use. The principle of the WQPIU based on lateral shearing interferometry and phase shifting interferometry provides a cost-effective and user-friendly use of QPI. The validity and capacity of the presented method are demonstrated by measuring quantitative phase images of polystyrene beads, human red blood cells, HeLa cells and mouse white blood cells. With speckle-free imaging capability due to the use of white-light illumination, the WQPIU is expected to expand the scope of QPI in biological sciences as a powerful but simple imaging tool.

  15. White-light quantitative phase imaging unit.

    PubMed

    Baek, YoonSeok; Lee, KyeoReh; Yoon, Jonghee; Kim, Kyoohyun; Park, YongKeun

    2016-05-01

    We introduce the white-light quantitative phase imaging unit (WQPIU) as a practical realization of quantitative phase imaging (QPI) on standard microscope platforms. The WQPIU is a compact stand-alone unit which measures sample induced phase delay under white-light illumination. It does not require any modification of the microscope or additional accessories for its use. The principle of the WQPIU based on lateral shearing interferometry and phase shifting interferometry provides a cost-effective and user-friendly use of QPI. The validity and capacity of the presented method are demonstrated by measuring quantitative phase images of polystyrene beads, human red blood cells, HeLa cells and mouse white blood cells. With speckle-free imaging capability due to the use of white-light illumination, the WQPIU is expected to expand the scope of QPI in biological sciences as a powerful but simple imaging tool. PMID:27137546

  16. Phase contrast imaging of cochlear soft tissue.

    SciTech Connect

    Smith, S.; Hwang, M.; Rau, C.; Fishman, A.; Lee, W.; Richter, C.

    2011-01-01

    A noninvasive technique to image soft tissue could expedite diagnosis and disease management in the auditory system. We propose inline phase contrast imaging with hard X-rays as a novel method that overcomes the limitations of conventional absorption radiography for imaging soft tissue. In this study, phase contrast imaging of mouse cochleae was performed at the Argonne National Laboratory Advanced Photon Source. The phase contrast tomographic reconstructions show soft tissue structures of the cochlea, including the inner pillar cells, the inner spiral sulcus, the tectorial membrane, the basilar membrane, and the Reissner's membrane. The results suggest that phase contrast X-ray imaging and tomographic techniques hold promise to noninvasively image cochlear structures at an unprecedented cellular level.

  17. FPGA-based multi-channel fluorescence lifetime analysis of Fourier multiplexed frequency-sweeping lifetime imaging

    PubMed Central

    Zhao, Ming; Li, Yu; Peng, Leilei

    2014-01-01

    We report a fast non-iterative lifetime data analysis method for the Fourier multiplexed frequency-sweeping confocal FLIM (Fm-FLIM) system [ Opt. Express22, 10221 ( 2014)24921725]. The new method, named R-method, allows fast multi-channel lifetime image analysis in the system’s FPGA data processing board. Experimental tests proved that the performance of the R-method is equivalent to that of single-exponential iterative fitting, and its sensitivity is well suited for time-lapse FLIM-FRET imaging of live cells, for example cyclic adenosine monophosphate (cAMP) level imaging with GFP-Epac-mCherry sensors. With the R-method and its FPGA implementation, multi-channel lifetime images can now be generated in real time on the multi-channel frequency-sweeping FLIM system, and live readout of FRET sensors can be performed during time-lapse imaging. PMID:25321778

  18. System design of Fourier transform imaging spectrometer using tunable lateral shearing splitter

    NASA Astrophysics Data System (ADS)

    Meng, Xin; Li, Jianxin; Bai, Caixun; Zhu, Rihong

    2015-04-01

    The Fourier transform spectrometer without slit has the advantages of high radiation throughput and high spatial resolution. It can be used for detecting more details of the spectral and spatial information. We present the initial structure of the collimator and objective based on the analysis of the principle of the Fourier transform spectrometer. Then the collimator and objective are optimized by Zemax. The MTF of the cut-off frequency is great than 0.7. The tunable lateral shearing splitter is used as the interferometer, which makes the system more compact compared with the system using Sagnac lateral shearing splitter. The method to calculate the geometric dimension of the splitter is presented. Then the complete Fourier transform spectrometer is designed. The MTF of the cut-off frequency is great than 0.6. And the largest RMS of the spot is less than 6μm.

  19. From regular text to artistic writing and artworks: Fourier statistics of images with low and high aesthetic appeal

    PubMed Central

    Melmer, Tamara; Amirshahi, Seyed A.; Koch, Michael; Denzler, Joachim; Redies, Christoph

    2013-01-01

    The spatial characteristics of letters and their influence on readability and letter identification have been intensely studied during the last decades. There have been few studies, however, on statistical image properties that reflect more global aspects of text, for example properties that may relate to its aesthetic appeal. It has been shown that natural scenes and a large variety of visual artworks possess a scale-invariant Fourier power spectrum that falls off linearly with increasing frequency in log-log plots. We asked whether images of text share this property. As expected, the Fourier spectrum of images of regular typed or handwritten text is highly anisotropic, i.e., the spectral image properties in vertical, horizontal, and oblique orientations differ. Moreover, the spatial frequency spectra of text images are not scale-invariant in any direction. The decline is shallower in the low-frequency part of the spectrum for text than for aesthetic artworks, whereas, in the high-frequency part, it is steeper. These results indicate that, in general, images of regular text contain less global structure (low spatial frequencies) relative to fine detail (high spatial frequencies) than images of aesthetics artworks. Moreover, we studied images of text with artistic claim (ornate print and calligraphy) and ornamental art. For some measures, these images assume average values intermediate between regular text and aesthetic artworks. Finally, to answer the question of whether the statistical properties measured by us are universal amongst humans or are subject to intercultural differences, we compared images from three different cultural backgrounds (Western, East Asian, and Arabic). Results for different categories (regular text, aesthetic writing, ornamental art, and fine art) were similar across cultures. PMID:23554592

  20. From regular text to artistic writing and artworks: Fourier statistics of images with low and high aesthetic appeal.

    PubMed

    Melmer, Tamara; Amirshahi, Seyed A; Koch, Michael; Denzler, Joachim; Redies, Christoph

    2013-01-01

    The spatial characteristics of letters and their influence on readability and letter identification have been intensely studied during the last decades. There have been few studies, however, on statistical image properties that reflect more global aspects of text, for example properties that may relate to its aesthetic appeal. It has been shown that natural scenes and a large variety of visual artworks possess a scale-invariant Fourier power spectrum that falls off linearly with increasing frequency in log-log plots. We asked whether images of text share this property. As expected, the Fourier spectrum of images of regular typed or handwritten text is highly anisotropic, i.e., the spectral image properties in vertical, horizontal, and oblique orientations differ. Moreover, the spatial frequency spectra of text images are not scale-invariant in any direction. The decline is shallower in the low-frequency part of the spectrum for text than for aesthetic artworks, whereas, in the high-frequency part, it is steeper. These results indicate that, in general, images of regular text contain less global structure (low spatial frequencies) relative to fine detail (high spatial frequencies) than images of aesthetics artworks. Moreover, we studied images of text with artistic claim (ornate print and calligraphy) and ornamental art. For some measures, these images assume average values intermediate between regular text and aesthetic artworks. Finally, to answer the question of whether the statistical properties measured by us are universal amongst humans or are subject to intercultural differences, we compared images from three different cultural backgrounds (Western, East Asian, and Arabic). Results for different categories (regular text, aesthetic writing, ornamental art, and fine art) were similar across cultures. PMID:23554592

  1. Amplified dispersive Fourier-transform imaging for ultrafast displacement sensing and barcode reading

    NASA Astrophysics Data System (ADS)

    Goda, Keisuke; Tsia, Kevin K.; Jalali, Bahram

    2008-09-01

    Dispersive Fourier transformation is a powerful technique in which the spectrum of an optical pulse is mapped into a time-domain waveform using chromatic dispersion. It replaces a diffraction grating and detector array with a dispersive fiber and single photodetector. This simplifies the system and, more importantly, enables fast real-time measurements. Here we describe a novel ultrafast barcode reader and displacement sensor that employs internally amplified dispersive Fourier transformation. This technique amplifies and simultaneously maps the spectrally encoded barcode into a temporal waveform. It achieves a record acquisition speed of 25MHz—four orders of magnitude faster than the current state of the art.

  2. A Panchromatic Imaging Fourier Transform Spectrometer for the NASA Geostationary Coastal and Air Pollution Events Mission

    NASA Technical Reports Server (NTRS)

    Wu, Yen-Hung; Key, Richard; Sander, Stanley; Blavier, Jean-Francois; Rider, David

    2011-01-01

    This paper summarizes the design and development of the Panchromatic Imaging Fourier Transform Spectrometer (PanFTS) for the NASA Geostationary Coastal and Air Pollution Events (GEO-CAPE) Mission. The PanFTS instrument will advance the understanding of the global climate and atmospheric chemistry by measuring spectrally resolved outgoing thermal and reflected solar radiation. With continuous spectral coverage from the near-ultraviolet through the thermal infrared, this instrument is designed to measure pollutants, greenhouse gases, and aerosols as called for by the U.S. National Research Council Decadal Survey; Earth Science and Applications from Space: National Imperatives for the Next Decade and Beyond1. The PanFTS instrument is a hybrid instrument based on spectrometers like the Tropospheric Emissions Spectrometer (TES) that measures thermal emission, and those like the Orbiting Carbon Observatory (OCO), and the Ozone Monitoring Instrument (OMI) that measure scattered solar radiation. Simultaneous measurements over the broad spectral range from IR to UV is accomplished by a two sided interferometer with separate optical trains and detectors for the ultraviolet-visible and infrared spectral domains. This allows each side of the instrument to be independently optimized for its respective spectral domain. The overall interferometer design is compact because the two sides share a single high precision cryogenic optical path difference mechanism (OPDM) and metrology laser as well as a number of other instrument systems including the line-of-sight pointing mirror, the data management system, thermal control system, electrical system, and the mechanical structure. The PanFTS breadboard instrument has been tested in the laboratory and demonstrated the basic functionality for simultaneous measurements in the visible and infrared. It is set to begin operations in the field at the California Laboratory for Atmospheric Remote Sensing (CLARS) observatory on Mt. Wilson

  3. A Panchromatic Imaging Fourier Transform Spectrometer for the NASA Geostationary Coastal and Air Pollution Events Mission

    NASA Astrophysics Data System (ADS)

    Wu, Yen-Hung; Key, Richard; Sander, Stanley; Blavier, Jean-Francois; Rider, David

    2011-10-01

    This paper summarizes the design and development of the Panchromatic Imaging Fourier Transform Spectrometer (PanFTS) for the NASA Geostationary Coastal and Air Pollution Events (GEO-CAPE) Mission. The PanFTS instrument will advance the understanding of the global climate and atmospheric chemistry by measuring spectrally resolved outgoing thermal and reflected solar radiation. With continuous spectral coverage from the near-ultraviolet through the thermal infrared, this instrument is designed to measure pollutants, greenhouse gases, and aerosols as called for by the U.S. National Research Council Decadal Survey; Earth Science and Applications from Space: National Imperatives for the Next Decade and Beyond1. The PanFTS instrument is a hybrid based on spectrometers like the Tropospheric Emissions Spectrometer (TES) that measures thermal emission, and those like the Orbiting Carbon Observatory (OCO), and the Ozone Monitoring Instrument (OMI) that measure scattered solar radiation. Simultaneous measurements over the broad spectral range from IR to UV is accomplished by a two sided interferometer with separate optical trains and detectors for the UV-visible and IR spectral domains. This allows each side of the instrument to be independently optimized for its respective spectral domain. The overall interferometer design is compact because the two sides share a single high precision cryogenic optical path difference mechanism (OPDM) and metrology laser as well as a number of other instrument systems including the line-of-sight pointing mirror, the data management system, thermal control system, electrical system, and the mechanical structure. The PanFTS breadboard instrument has been tested in the laboratory and demonstrated the basic functionality for simultaneous measurements in the visible and IR. It is set to begin operations in the field at the California Laboratory for Atmospheric Remote Sensing (CLARS) observatory on Mt. Wilson measuring the atmospheric chemistry

  4. Quantitative Fourier transform infrared analysis of gas phase cigarette smoke and other gas mixtures

    SciTech Connect

    Cueto, R.; Church, D.F.; Pryor, W.A. )

    1989-03-01

    A new method for the analysis of selected components in complex gas mixtures has been developed utilizing a relatively inexpensive Fourier transform infrared spectrometer and a continuous flow gas cell. The method was used to monitor nitric oxide and nitrogen dioxide concentrations in cigarette smoke with time. Using multivariate least-square regression analysis, it is possible to simultaneously quantitate both NO and NO{sub 2}, even in the presence of overlapping peaks. Using this method, the oxidation of nitric oxide in the presence of isoprene in cigarette smoke and in a model system was followed with time. The method also can be applied to other compounds in smoke or to any other gaseous mixture.

  5. Molecular Dynamics at Electrical- and Optical-Driven Phase Transitions: Time-Resolved Infrared Studies Using Fourier-Transform Spectrometers

    NASA Astrophysics Data System (ADS)

    Peterseim, Tobias; Dressel, Martin

    2016-06-01

    The time-dependent optical properties of molecular systems are investigated by step-scan Fourier-transform spectroscopy in order to explore the dynamics at phase transitions and molecular orientation in the milli- and microsecond range. The electrical switching of liquid crystals traced by vibrational spectroscopy reveals a rotation of the molecules with a relaxation time of 2 ms. The photo-induced neutral-ionic transition in TTF-CA takes place by a suppression of the dimerization in the ionic phase and creation of neutral domains. The time-dependent infrared spectra, employed to investigate the domain-wall dynamics, depend on temperature and laser pulse intensity; the relaxation of the spectra follows a stretched-exponential decay with relaxation times in the microsecond range strongly dependent on temperature and laser intensity. We present all details of the experimental setups and thoroughly discuss the technical challenges.

  6. Absorption-Mode Fourier Transform Mass Spectrometry: The Effects of Apodization and Phasing on Modified Protein Spectra

    NASA Astrophysics Data System (ADS)

    Qi, Yulin; Li, Huilin; Wills, Rebecca H.; Perez-Hurtado, Pilar; Yu, Xiang; Kilgour, David P. A.; Barrow, Mark P.; Lin, Cheng; O'Connor, Peter B.

    2013-06-01

    The method of phasing broadband Fourier transform ion cyclotron resonance (FT-ICR) spectra allows plotting the spectra in the absorption-mode; this new approach significantly improves the quality of the data at no extra cost. Herein, an internal calibration method for calculating the phase function has been developed and successfully applied to the top-down spectra of modified proteins, where the peak intensities vary by 100×. The result shows that the use of absorption-mode spectra allows more peaks to be discerned within the recorded data, and this can reveal much greater information about the protein and modifications under investigation. In addition, noise and harmonic peaks can be assigned immediately in the absorption-mode.

  7. Symmetric Phase-Only Filtering in Particle-Image Velocimetry

    NASA Technical Reports Server (NTRS)

    Wemet, Mark P.

    2008-01-01

    Symmetrical phase-only filtering (SPOF) can be exploited to obtain substantial improvements in the results of data processing in particle-image velocimetry (PIV). In comparison with traditional PIV data processing, SPOF PIV data processing yields narrower and larger amplitude correlation peaks, thereby providing more-accurate velocity estimates. The higher signal-to-noise ratios associated with the higher amplitude correlation peaks afford greater robustness and reliability of processing. SPOF also affords superior performance in the presence of surface flare light and/or background light. SPOF algorithms can readily be incorporated into pre-existing algorithms used to process digitized image data in PIV, without significantly increasing processing times. A summary of PIV and traditional PIV data processing is prerequisite to a meaningful description of SPOF PIV processing. In PIV, a pulsed laser is used to illuminate a substantially planar region of a flowing fluid in which particles are entrained. An electronic camera records digital images of the particles at two instants of time. The components of velocity of the fluid in the illuminated plane can be obtained by determining the displacements of particles between the two illumination pulses. The objective in PIV data processing is to compute the particle displacements from the digital image data. In traditional PIV data processing, to which the present innovation applies, the two images are divided into a grid of subregions and the displacements determined from cross-correlations between the corresponding sub-regions in the first and second images. The cross-correlation process begins with the calculation of the Fourier transforms (or fast Fourier transforms) of the subregion portions of the images. The Fourier transforms from the corresponding subregions are multiplied, and this product is inverse Fourier transformed, yielding the cross-correlation intensity distribution. The average displacement of the

  8. Near-field imaging and nano-Fourier-transform infrared spectroscopy using broadband synchrotron radiation.

    PubMed

    Hermann, Peter; Hoehl, Arne; Patoka, Piotr; Huth, Florian; Rühl, Eckart; Ulm, Gerhard

    2013-02-11

    We demonstrate scanning near-field optical microscopy with a spatial resolution below 100 nm by using low intensity broadband synchrotron radiation in the IR regime. The use of such a broadband radiation source opens up the possibility to perform nano-Fourier-transform infrared spectroscopy over a wide spectral range. PMID:23481749

  9. Recent developments in Fourier domain mode locked lasers for optical coherence tomography: imaging at 1310 nm vs. 1550 nm wavelength.

    PubMed

    Biedermann, Benjamin R; Wieser, Wolfgang; Eigenwillig, Christoph M; Huber, Robert

    2009-07-01

    We report on recent progress in Fourier domain mode-locking (FDML) technology. The paper focuses on developments beyond pushing the speed of these laser sources. After an overview of improvements to FDML over the last three years, a brief analysis of OCT imaging using FDML lasers with different wavelengths is presented. For the first time, high speed, high quality FDML imaging at 1550 nm is presented and compared to a system at 1310 nm. The imaging results of human skin for both wavelengths are compared and analyzed. Sample arm optics, power on the sample, heterodyne gain, detection bandwidth, colour cut levels and sample location have been identical to identify the influence of difference in scattering and water absorption. The imaging performance at 1310 nm in human skin is only slightly better and the results suggest that water absorption only marginally affects the penetration depth in human skin at 1550 nm. For several applications this wavelength may be preferred. PMID:19565537

  10. Tests of a practical visible-NIR imaging Fourier transform spectrometer for biological and chemical fluorescence emission measurements.

    PubMed

    Li, Jianping; Chan, Robert K Y; Wang, Xuzhu

    2009-11-01

    An imaging Fourier transform spectrometer (IFTS) designed for fluorescence emission measurements is reported. The spectral range extension from NIR to visible of the system is realized by using a simple and low-cost optical beam-folding position-tracking technique. Spectral resolution as high as 9.78cm(-1)(0.4nm at 632.8nm) and maximum image resolution up to 300x300 pixels are proved by the system tests on its optical performances. Imaging fluorescence spectra acquisition of quantum dot clusters and single 200nm diameter fluorescent beads have demonstrated the system's potential for high throughput imaging spectroscopic measurements of fluorescent biological and chemical samples. PMID:19997347

  11. Fourier transform infrared assay of membrane lipids immobilized to silica: leaching and stability of immobilized artificial membrane-bonded phases.

    PubMed

    Markovich, R J; Stevens, J M; Pidgeon, C

    1989-11-01

    A nondestructive, sensitive assay to monitor the hydrocarbon content of silica-based chromatography particles has been developed. The assay requires a microscope accessory interfaced with a Fourier transform infrared (FTIR) spectrometer. For determining hydrocarbon content, undiluted alkyl-silica-bonded phases were pressed into a thin wafer. Hydrocarbon content was quantitated using the integrated hydrocarbon band intensity between 2995 and 2825 cm-1 [i.e., band area C-H] and the integrated silica oxide band intensity between 1945 and 1780 cm-1 [i.e., band area Si-O]. Plotting the [band area C-H]/[band area Si-O] ratio vs the carbon content determined by elemental analysis gave a correlation coefficient of r = 0.997. The FTIR assay was validated on 5-, 7-, and 12-microns silica particles using three different immobilized artificial membrane (IAM) silica-bonded phases. The utility of the FTIR assay in determining hydrocarbon content was demonstrated by evaluating hydrocarbon leaching from IAM phases exposed to mobile-phase solvents. The ability of organic solvents to leach hydrocarbon from IAM phases containing phosphatidylcholine (PC) as the immobilized ligand was chloroform greater than ethanol approximately methanol greater than ethyl acetate greater than methylene chloride greater than acetonitrile greater than acetone. Acetone and acetonitrile cause very little hydrocarbon leaching from HPLC-IAM.PC columns. When challenged with different mobile phases, IAM.PC columns perfused with mobile phase are more stable than IAM.PC-bonded phases stirred in mobile phases. IAM.PC contains lecithin linked to silica by amide bonds.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:2558589

  12. Phase and TV Based Convex Sets for Blind Deconvolution of Microscopic Images

    NASA Astrophysics Data System (ADS)

    Tofighi, Mohammad; Yorulmaz, Onur; Kose, Kivanc; Yildirim, Deniz Cansen; Cetin-Atalay, Rengul; Cetin, A. Enis

    2016-02-01

    In this article, two closed and convex sets for blind deconvolution problem are proposed. Most blurring functions in microscopy are symmetric with respect to the origin. Therefore, they do not modify the phase of the Fourier transform (FT) of the original image. As a result blurred image and the original image have the same FT phase. Therefore, the set of images with a prescribed FT phase can be used as a constraint set in blind deconvolution problems. Another convex set that can be used during the image reconstruction process is the epigraph set of Total Variation (TV) function. This set does not need a prescribed upper bound on the total variation of the image. The upper bound is automatically adjusted according to the current image of the restoration process. Both of these two closed and convex sets can be used as a part of any blind deconvolution algorithm. Simulation examples are presented.

  13. Quantitative phase imaging using grating-based quadrature phase interferometer

    NASA Astrophysics Data System (ADS)

    Wu, Jigang; Yaqoob, Zahid; Heng, Xin; Cui, Xiquan; Yang, Changhuei

    2007-02-01

    In this paper, we report the use of holographic gratings, which act as the free-space equivalent of the 3x3 fiber-optic coupler, to perform full field phase imaging. By recording two harmonically-related gratings in the same holographic plate, we are able to obtain nontrivial phase shift between different output ports of the gratings-based Mach-Zehnder interferometer. The phase difference can be adjusted by changing the relative phase of the recording beams when recording the hologram. We have built a Mach-Zehnder interferometer using harmonically-related holographic gratings with 600 and 1200 lines/mm spacing. Two CCD cameras at the output ports of the gratings-based Mach-Zehnder interferometer are used to record the full-field quadrature interferograms, which are subsequently processed to reconstruct the phase image. The imaging system has ~12X magnification with ~420μmx315μm field-of-view. To demonstrate the capability of our system, we have successfully performed phase imaging of a pure phase object and a paramecium caudatum.

  14. Image Display and Manipulation System (IDAMS) program documentation, Appendixes A-D. [including routines, convolution filtering, image expansion, and fast Fourier transformation

    NASA Technical Reports Server (NTRS)

    Cecil, R. W.; White, R. A.; Szczur, M. R.

    1972-01-01

    The IDAMS Processor is a package of task routines and support software that performs convolution filtering, image expansion, fast Fourier transformation, and other operations on a digital image tape. A unique task control card for that program, together with any necessary parameter cards, selects each processing technique to be applied to the input image. A variable number of tasks can be selected for execution by including the proper task and parameter cards in the input deck. An executive maintains control of the run; it initiates execution of each task in turn and handles any necessary error processing.

  15. Attenuated total reflection-Fourier transform infrared spectroscopic imaging of pharmaceuticals in microfluidic devices.

    PubMed

    Ewing, Andrew V; Clarke, Graham S; Kazarian, Sergei G

    2016-03-01

    The poor aqueous solubility of many active pharmaceutical ingredients presents challenges for effective drug delivery. In this study, the combination of attenuated total reflection (ATR)-FTIR spectroscopic imaging with specifically designed polydimethylsiloxane microfluidic devices to study drug release from pharmaceutical formulations has been developed. First, the high-throughput analysis of the dissolution of micro-formulations studied under flowing conditions has been introduced using a model formulation of ibuprofen and polyethylene glycol. The behaviour and release of the drug was monitored in situ under different pH conditions. In contrast to the neutral solution, where both the drug and excipient dissolved at a similar rate, structural change from the molecularly dispersed to a crystalline form of ibuprofen was characterised in the obtained spectroscopic images and the corresponding ATR-FTIR spectra for the experiments carried out in the acidic medium. Further investigations into the behaviour of the drug after its release from formulations (i.e., dissolved drug) were also undertaken. Different solutions of sodium ibuprofen dissolved in a neutral medium were studied upon contact with acidic conditions. The phase transition from a dissolved species of sodium ibuprofen to the formation of solid crystalline ibuprofen was revealed in the microfluidic channels. This innovative approach could offer a promising platform for high-throughput analysis of a range of micro-formulations, which are of current interest due to the advent of 3D printed pharmaceutical and microparticulate delivery systems. Furthermore, the ability to study dissolved drug in solution under flowing conditions can be useful for the studies of the diffusion of drugs into tissues or live cells. PMID:27158293

  16. Automated broadband phase correction of Fourier transform ion cyclotron resonance mass spectra.

    PubMed

    Xian, Feng; Hendrickson, Christopher L; Blakney, Greg T; Beu, Steven C; Marshall, Alan G

    2010-11-01

    It has been known for 35 years that phase correction of FTICR data can in principle produce an absorption-mode spectrum with mass resolving power as much as a factor of 2 higher than conventional magnitude-mode display, an improvement otherwise requiring a (much more expensive) increase in magnetic field strength. However, temporally dispersed excitation followed by time-delayed detection results in steep quadratic variation of signal phase with frequency. Here, we present a robust, rapid, automated method to enable accurate broadband phase correction for all peaks in the mass spectrum. Low-pass digital filtering effectively eliminates the accompanying baseline roll. Experimental FTICR absorption-mode mass spectra exhibit at least 40% higher resolving power (and thus an increased number of resolved peaks) as well as higher mass accuracy relative to magnitude mode spectra, for more complete and more reliable elemental composition assignments for mixtures as complex as petroleum. PMID:20954755

  17. [High precision all-reflection Fourier transform imaging spectrometer spectral calibration using homogeneous broadening of the wave number model].

    PubMed

    Cui, De-qi; Liao, Ning-fang; Cao, Wei-liang; Tan, Bo-neng; Tian, Li-xun

    2011-07-01

    All-reflection Fourier transform imaging spectrometer (ARFTIS) is a novel imaging spectrometer. The specialty is not only high spectrum resolution, but also wide band and non-chromatism. It is good for remote sensing field of wide band imaging. Single spectrum calibration, average calibration and weighted average calibration are three common calibration methods. However, they all are limited. Because they cannot meet the demand on both convenience and high precision. In the present paper, the authors propose a novel model for spectrum calibration. It can work in high precision with single spectrum calibration. At the same time, the method is steady, and the average error is less than 5% with multi-bands calibration. It provides a convenient way for the non-professional calibration situation and outer simply calibration work. PMID:21942019

  18. Imaging the Ocular Anterior Segment With Real-Time, Full-Range Fourier-Domain Optical Coherence Tomography

    PubMed Central

    Sarunic, Marinko V.; Asrani, Sanjay; Izatt, Joseph A.

    2009-01-01

    We have demonstrated a novel Fourier-domain optical coherence tomography system and signal-processing algorithm for full-range, real-time, artifact-free quantitative imaging of the anterior chamber. Cross-sectional full-range images comprising 1024×800 pixels (axial×lateral) were acquired and displayed at 6.7 images/s. Volumetric data comprising 1024×400×60 pixels (axial×lateral×elevation) were acquired in 4.5 seconds with real-time visualization of individual slices and 3-dimensional reconstruction performed in postprocessing. Details of the cornea, limbus, iris, anterior lens capsule, trabecular meshwork, and Schlemm’s canal were visualized. Quantitative surface height maps of the corneal epithelium and endothelium were obtained from the volumetric data and used to generate corneal thickness maps. PMID:18413525

  19. Genetic Algorithm Phase Retrieval for the Systematic Image-Based Optical Alignment Testbed

    NASA Technical Reports Server (NTRS)

    Taylor, Jaime; Rakoczy, John; Steincamp, James

    2003-01-01

    Phase retrieval requires calculation of the real-valued phase of the pupil fimction from the image intensity distribution and characteristics of an optical system. Genetic 'algorithms were used to solve two one-dimensional phase retrieval problem. A GA successfully estimated the coefficients of a polynomial expansion of the phase when the number of coefficients was correctly specified. A GA also successfully estimated the multiple p h e s of a segmented optical system analogous to the seven-mirror Systematic Image-Based Optical Alignment (SIBOA) testbed located at NASA s Marshall Space Flight Center. The SIBOA testbed was developed to investigate phase retrieval techniques. Tiphilt and piston motions of the mirrors accomplish phase corrections. A constant phase over each mirror can be achieved by an independent tip/tilt correction: the phase Conection term can then be factored out of the Discrete Fourier Tranform (DFT), greatly reducing computations.

  20. Multifocus image fusion using phase congruency

    NASA Astrophysics Data System (ADS)

    Zhan, Kun; Li, Qiaoqiao; Teng, Jicai; Wang, Mingying; Shi, Jinhui

    2015-05-01

    We address the problem of fusing multifocus images based on the phase congruency (PC). PC provides a sharpness feature of a natural image. The focus measure (FM) is identified as strong PC near a distinctive image feature evaluated by the complex Gabor wavelet. The PC is more robust against noise than other FMs. The fusion image is obtained by a new fusion rule (FR), and the focused region is selected by the FR from one of the input images. Experimental results show that the proposed fusion scheme achieves the fusion performance of the state-of-the-art methods in terms of visual quality and quantitative evaluations.

  1. Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra

    NASA Astrophysics Data System (ADS)

    Kleinert, A.; Friedl-Vallon, F.; Guggenmoser, T.; Höpfner, M.; Neubert, T.; Ribalda, R.; Sha, M. K.; Ungermann, J.; Blank, J.; Ebersoldt, A.; Kretschmer, E.; Latzko, T.; Oelhaf, H.; Olschewski, F.; Preusse, P.

    2014-03-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) is an imaging Fourier transform spectrometer that is capable of operating on various high altitude research aircraft. It measures the atmospheric emission in the thermal infrared spectral region in limb and nadir geometry. GLORIA consists of a classical Michelson interferometer combined with an infrared camera. The infrared detector has a usable range of 128 × 128 pixels, measuring up to 16 384 interferograms simultaneously. Imaging Fourier transform spectrometers impose a number of challenges with respect to instrument calibration and algorithm development. The innovative optical setup with extremely high optical throughput requires the development of new methods and algorithms for spectral and radiometric calibration. Due to the vast amount of data there is a high demand for scientifically intelligent optimisation of the data processing. This paper outlines the characterisation and processing steps required for the generation of radiometrically and spectrally calibrated spectra. Methods for performance optimisation of the processing algorithm are presented. The performance of the data processing and the quality of the calibrated spectra are demonstrated for measurements collected during the first deployments of GLORIA on aircraft.

  2. Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra

    NASA Astrophysics Data System (ADS)

    Kleinert, A.; Friedl-Vallon, F.; Guggenmoser, T.; Höpfner, M.; Neubert, T.; Ribalda, R.; Sha, M. K.; Ungermann, J.; Blank, J.; Ebersoldt, A.; Kretschmer, E.; Latzko, T.; Oelhaf, H.; Olschewski, F.; Preusse, P.

    2014-12-01

    The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA) is an imaging Fourier transform spectrometer that is capable of operating on various high-altitude research aircraft. It measures the atmospheric emission in the thermal infrared spectral region in limb and nadir geometry. GLORIA consists of a classical Michelson interferometer combined with an infrared camera. The infrared detector has a usable area of 128 × 128 pixels, measuring up to 16 384 interferograms simultaneously. Imaging Fourier transform spectrometers impose a number of challenges with respect to instrument calibration and algorithm development. The optical setup with extremely high optical throughput requires the development of new methods and algorithms for spectral and radiometric calibration. Due to the vast amount of data there is a high demand for scientifically intelligent optimisation of the data processing. This paper outlines the characterisation and processing steps required for the generation of radiometrically and spectrally calibrated spectra. Methods for performance optimisation of the processing algorithm are presented. The performance of the data processing and the quality of the calibrated spectra are demonstrated for measurements collected during the first deployments of GLORIA on aircraft.

  3. Phase imaging in brain using SWIFT

    NASA Astrophysics Data System (ADS)

    Lehto, Lauri Juhani; Garwood, Michael; Gröhn, Olli; Corum, Curtis Andrew

    2015-03-01

    The majority of MRI phase imaging is based on gradient recalled echo (GRE) sequences. This work studies phase contrast behavior due to small off-resonance frequency offsets in brain using SWIFT, a FID-based sequence with nearly zero acquisition delay. 1D simulations and a phantom study were conducted to describe the behavior of phase accumulation in SWIFT. Imaging experiments of known brain phase contrast properties were conducted in a perfused rat brain comparing GRE and SWIFT. Additionally, a human brain sample was imaged. It is demonstrated how SWIFT phase is orientation dependent and correlates well with GRE, linking SWIFT phase to similar off-resonance sources as GRE. The acquisition time is shown to be analogous to TE for phase accumulation time. Using experiments with and without a magnetization transfer preparation, the likely effect of myelin water pool contribution is seen as a phase increase for all acquisition times. Due to the phase accumulation during acquisition, SWIFT phase contrast can be sensitized to small frequency differences between white and gray matter using low acquisition bandwidths.

  4. Phase contrast portal imaging using synchrotron radiation

    NASA Astrophysics Data System (ADS)

    Umetani, K.; Kondoh, T.

    2014-07-01

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  5. Phase contrast portal imaging using synchrotron radiation

    SciTech Connect

    Umetani, K.; Kondoh, T.

    2014-07-15

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  6. Method of spectral subtraction of gas-phase Fourier transform infrared (FT-IR) spectra by minimizing the spectrum length.

    PubMed

    Kozlov, Denis; Besov, Alexey

    2011-08-01

    A new method of spectral subtraction for gas-phase Fourier transform infrared (FT-IR) spectra was developed for long-path gas measurements. The method is based on minimization of the length of the spectrum that results from subtracting the spectrum of an individual component of a gas mixture (water, CO(2), etc.) from the experimental spectrum of the mixture. For this purpose a subtraction coefficient (k(min)) is found for which the length of the resulting spectrum is minimized. A mathematical simulation with two Lorentzian absorption bands was conducted and the limits of application for the proposed method were determined. Two experimental examples demonstrate that a successful result could be achieved in the case when the subtrahend spectrum contains a number of narrow absorption bands (such as the spectrum of water vapor). PMID:21819781

  7. Stage-II-screening device for testing of heterogeneous catalysts in gas phase reactions with Fourier transform infrared analysis

    NASA Astrophysics Data System (ADS)

    Brüning, Rainer; Scholz, Peter; Ondruschka, Bernd

    2005-07-01

    The construction of a stage-II-screening device for heterogeneous catalysts in gas phase reactions under ambient pressure is described. The concentrations of the reaction products are determined by Fourier transform infrared analysis in combination with a chemometric interpretation of the obtained spectra. Thus, fast high-precision product analyses with complete mass balances are feasible, within the limits of accuracy of the measurements. The device is designed to screen up to 17 catalysts in one testing cycle. It is possible to determine temperature-conversion-selectivity dependencies as well as long-term measurements under constant conditions. With the help of the device described, the catalytic properties of new materials were parallel tested for the oxidative dehydrogenation of isopropanol.

  8. Optical character recognition of camera-captured images based on phase features

    NASA Astrophysics Data System (ADS)

    Diaz-Escobar, Julia; Kober, Vitaly

    2015-09-01

    Nowadays most of digital information is obtained using mobile devices specially smartphones. In particular, it brings the opportunity for optical character recognition in camera-captured images. For this reason many recognition applications have been recently developed such as recognition of license plates, business cards, receipts and street signal; document classification, augmented reality, language translator and so on. Camera-captured images are usually affected by geometric distortions, nonuniform illumination, shadow, noise, which make difficult the recognition task with existing systems. It is well known that the Fourier phase contains a lot of important information regardless of the Fourier magnitude. So, in this work we propose a phase-based recognition system exploiting phase-congruency features for illumination/scale invariance. The performance of the proposed system is tested in terms of miss classifications and false alarms with the help of computer simulation.

  9. Ultrahigh-speed imaging of the rat retina using ultrahigh-resolution spectral/Fourier domain OCT

    NASA Astrophysics Data System (ADS)

    Liu, Jonathan J.; Potsaid, Benjamin; Chen, Yueli; Gorczynska, Iwona; Srinivasan, Vivek J.; Duker, Jay S.; Fujimoto, James G.

    2010-02-01

    We performed OCT imaging of the rat retina at 70,000 axial scans per second with ~3 μm axial resolution. Three-dimensional OCT (3D-OCT) data sets of the rat retina were acquired. The high speed and high density data sets enable improved en face visualization by reducing eye motion artifacts and improve Doppler OCT measurements. Minimal motion artifacts were visible and the OCT fundus images offer more precise registration of individual OCT images to retinal fundus features. Projection OCT fundus images show features such as the nerve fiber layer, retinal capillary networks and choroidal vasculature. Doppler OCT images and quantitative measurements show pulsatility in retinal blood vessels. Doppler OCT provides noninvasive in vivo quantitative measurements of retinal blood flow properties and may benefit studies of diseases such as glaucoma and diabetic retinopathy. Ultrahigh speed imaging using ultrahigh resolution spectral / Fourier domain OCT promises to enable novel protocols for measuring small animal retinal structure and retinal blood flow. This non-invasive imaging technology is a promising tool for monitoring disease progression in rat and mouse models to assess ocular disease pathogenesis and response to treatment.

  10. Automated ambient desorption-ionization platform for surface imaging integrated with a commercial Fourier transform ion cyclotron resonance mass spectrometer.

    PubMed

    Pól, Jaroslav; Vidová, Veronika; Kruppa, Gary; Kobliha, Václav; Novák, Petr; Lemr, Karel; Kotiaho, Tapio; Kostiainen, Risto; Havlícek, Vladimír; Volný, Michael

    2009-10-15

    A fully automated atmospheric pressure ionization platform has been built and coupled with a commercial high-resolution Fourier transform ion cyclotron resonance mass spectrometer (FTICR-MS) instrument. The outstanding performance of this instrument allowed screening on the basis of exact masses in imaging mode. The main novel aspect was in the integration of the atmospheric pressure ionization imaging into the current software for matrix-assisted laser desorption ionization (MALDI) imaging, which allows the user of this commercial dual-source mass spectrometer to perform MALDI-MS and different ambient MS imaging from the same user interface and to utilize the same software tools. Desorption electrospray ionization (DESI) and desorption atmospheric pressure photoionization (DAPPI) were chosen to test the ambient surface imaging capabilities of this new ionization platform. Results of DESI imaging experiments performed on brain tissue sections are in agreement with previous MS imaging reports obtained by DESI imaging, but due to the high resolution and mass accuracy of the FTICR instrument it was possible to resolve several ions at the same nominal mass in the DESI-MS spectra of brain tissue. These isobaric interferences at low resolution are due to the overlap of ions from different lipid classes with different biological relevance. It was demonstrated that with the use of high-resolution MS fast imaging screening of lipids can be achieved without any preseparation steps. DAPPI, which is a relatively new and less developed ambient ionization technique compared to DESI, was used in imaging mode for the first time ever. It showed promise in imaging of phytocompounds from plant leaves, and selective ionization of a sterol lipid was achieved by DAPPI from a brain tissue sample. PMID:19761221

  11. Spectral modulation interferometry for quantitative phase imaging

    PubMed Central

    Shang, Ruibo; Chen, Shichao; Li, Chengshuai; Zhu, Yizheng

    2015-01-01

    We propose a spectral-domain interferometric technique, termed spectral modulation interferometry (SMI), and present its application to high-sensitivity, high-speed, and speckle-free quantitative phase imaging. In SMI, one-dimensional complex field of an object is interferometrically modulated onto a broadband spectrum. Full-field phase and intensity images are obtained by scanning along the orthogonal direction. SMI integrates the high sensitivity of spectral-domain interferometry with the high speed of spectral modulation to quantify fast phase dynamics, and its dispersive and confocal nature eliminates laser speckles. The principle and implementation of SMI are discussed. Its performance is evaluated using static and dynamic objects. PMID:25780737

  12. Simultaneous fluorescence and high-resolution bright-field imaging with aberration correction over a wide field-of-view with Fourier ptychographic microscopy (FPM) (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Chung, Jaebum; Kim, Jinho; Ou, Xiaoze; Horstmeyer, Roarke; Yang, Changhuei

    2016-03-01

    We present a method to acquire both fluorescence and high-resolution bright-field images with correction for the spatially varying aberrations over a microscope's wide field-of-view (FOV). First, the procedure applies Fourier ptychographic microscopy (FPM) to retrieve the amplitude and phase of a sample, at a resolution that significantly exceeds the cutoff frequency of the microscope objective lens. At the same time, FPM algorithm is able to leverage on the redundancy within the set of acquired FPM bright-field images to estimate the microscope aberrations, which usually deteriorate in regions further away from the FOV's center. Second, the procedure acquires a raw wide-FOV fluorescence image within the same setup. Lack of moving parts allows us to use the FPM-estimated aberration map to computationally correct for the aberrations in the fluorescence image through deconvolution. Overlaying the aberration-corrected fluorescence image on top of the high-resolution bright-field image can be done with accurate spatial correspondence. This can provide means to identifying fluorescent regions of interest within the context of the sample's bright-field information. An experimental demonstration successfully improves the bright-field resolution of fixed, stained and fluorescently tagged HeLa cells by a factor of 4.9, and reduces the error caused by aberrations in a fluorescence image by 31%, over a field of view of 6.2 mm by 9.3 mm. For optimal deconvolution, we show the fluorescence image needs to have a signal-to-noise ratio of ~18.

  13. Multiple image encryption by phase retrieval

    NASA Astrophysics Data System (ADS)

    Di, Hong; Kang, Yanmei; Liu, Yueqin; Zhang, Xin

    2016-07-01

    Multiple image encryption (MIE) was proposed to increase the efficiency of encrypting images by processing several images simultaneously. Because of the advantage of optical technology in processing twodimensional images at high throughput, MIE has been significantly improved by use of methods originating from optics. Phase retrieval was the process of algorithmically finding solutions to the phase loss problem due to light detectors only capturing the intensity. It was to retrieve phase information for the determination of a structure from diffraction data. Error-reduction algorithm is a typical phase retrieval method. Here, we employ it to illustrate that methods in phase retrieval are able to encrypt multiple images and compress them into encrypted data simultaneously. Moreover, the decryption is also designed to handle multiple images at the same time. The whole process including both the encryption and decryption is proposed to improve MIE with respect to the compression and efficiency. The feasibility and encryption of the MIE scheme is demonstrated with encryption experiments under Gaussian white noise and unauthorized access.

  14. Single image orthogonal fringe technique for resolution enhancement of the Fourier transform fringe analysis method

    NASA Astrophysics Data System (ADS)

    Tavares, Paulo J.; Vaz, Mário A. P.

    2013-03-01

    Gradient range and spatial resolution in Fourier Transform Profilometry depend on the size of the filter window in reciprocal space. The proposed methods to date for the elimination of the fundamental frequency and enlargement of the filter window are either too computationally complex or depend on the possibility of using two frames, thus disabling the method's ability to cope with dynamic situations and subjecting the results to possible intensity changes between the two frame acquisitions. This article describes a simple method for using a single crossed fringe pattern to accomplish that objective, greatly improving the previously reported technique, whilst retaining its main advantages.

  15. Synchronous Phase-Resolving Flash Range Imaging

    NASA Technical Reports Server (NTRS)

    Pain, Bedabrata; Hancock, Bruce

    2007-01-01

    An apparatus, now undergoing development, for range imaging based on measurement of the round-trip phase delay of a pulsed laser beam is described. The apparatus would operate in a staring mode. A pulsed laser would illuminate a target. Laser light reflected from the target would be imaged on a verylarge- scale integrated (VLSI)-circuit image detector, each pixel of which would contain a photodetector and a phase-measuring circuit. The round-trip travel time for the reflected laser light incident on each pixel, and thus the distance to the portion of the target imaged in that pixel, would be measured in terms of the phase difference between (1) the photodetector output pulse and (2) a local-oscillator signal that would have a frequency between 10 and 20 MHz and that would be synchronized with the laser-pulse-triggering signal.

  16. Concentration profiles of collagen and proteoglycan in articular cartilage by Fourier transform infrared imaging and principal component regression

    NASA Astrophysics Data System (ADS)

    Yin, Jianhua; Xia, Yang; Lu, Mei

    2012-03-01

    Fourier-transform infrared imaging (FT-IRI) technique with the principal component regression (PCR) method was used to quantitatively determine the 2D images and the depth-dependent concentration profiles of two principal macromolecular components (collagen and proteoglycan) in articular cartilage. Ten 6 μm thick sections of canine humeral cartilage were imaged at a pixel size of 6.25 μm in FT-IRI. The infrared spectra extracted from FT-IRI experiments were imported into a PCR program to calculate the quantitative distributions of both collagen and proteoglycan in dry cartilage, which were subsequently converted into the wet-weight based concentration profiles. The proteoglycan profiles by FT-IRI and PCR significantly correlated in linear regression with the proteoglycan profiles by the non-destructive μMRI (the goodness-of-fit 0.96 and the Pearson coefficient 0.98). Based on these concentration relationships, the concentration images of collagen and proteoglycan in both healthy and lesioned articular cartilage were successfully constructed two dimensionally. The simultaneous construction of both collagen and proteoglycan concentration images demonstrates that this combined imaging and chemometrics approach could be used as a sensitive tool to accurately resolve and visualize the concentration distributions of macromolecules in biological tissues.

  17. Quantitative x-ray phase imaging at the nanoscale by multilayer Laue lenses

    PubMed Central

    Yan, Hanfei; Chu, Yong S.; Maser, Jörg; Nazaretski, Evgeny; Kim, Jungdae; Kang, Hyon Chol; Lombardo, Jeffrey J.; Chiu, Wilson K. S.

    2013-01-01

    For scanning x-ray microscopy, many attempts have been made to image the phase contrast based on a concept of the beam being deflected by a specimen, the so-called differential phase contrast imaging (DPC). Despite the successful demonstration in a number of representative cases at moderate spatial resolutions, these methods suffer from various limitations that preclude applications of DPC for ultra-high spatial resolution imaging, where the emerging wave field from the focusing optic tends to be significantly more complicated. In this work, we propose a highly robust and generic approach based on a Fourier-shift fitting process and demonstrate quantitative phase imaging of a solid oxide fuel cell (SOFC) anode by multilayer Laue lenses (MLLs). The high sensitivity of the phase to structural and compositional variations makes our technique extremely powerful in correlating the electrode performance with its buried nanoscale interfacial structures that may be invisible to the absorption and fluorescence contrasts. PMID:23419650

  18. Phase congruency assesses hyperspectral image quality

    NASA Astrophysics Data System (ADS)

    Shao, Xiaopeng; Zhong, Cheng

    2012-10-01

    Blind image quality assessment (QA) is a tough task especially for hyperspectral imagery which is degraded by noise, distortion, defocus, and other complex factors. Subjective hyperspectral imagery QA methods are basically measured the degradation of image from human perceptual visual quality. As the most important image quality measurement features, noise and blur, determined the image quality greatly, are employed to predict the objective hyperspectral imagery quality of each band. We demonstrate a novel no-reference hyperspectral imagery QA model based on phase congruency (PC), which is a dimensionless quantity and provides an absolute measure of the significance of feature point. First, Log Gabor wavelet is used to calculate the phase congruency of frequencies of each band image. The relationship between noise and PC can be derived from above transformation under the assumption that noise is additive. Second, PC focus measure evaluation model is proposed to evaluate blur caused by different amounts of defocus. The ratio and mean factors of edge blur level and noise is defined to assess the quality of each band image. This image QA method obtains excellent correlation with subjective image quality score without any reference. Finally, the PC information is utilized to improve the quality of some bands images.

  19. TH-E-17A-08: Estimation of Image Quality of 4-Dimensional Computed Tomography (4DCT) Via Fourier Analysis of Corresponding 1D Breathing Surrogate

    SciTech Connect

    Caraveo, M; McNamara, J; Rimner, A; Yorke, E; Li, G; Wei, J

    2014-06-15

    Purpose: Motion artifacts are common in patient 4DCT, leading to an illdefined tumor volume with variation up to 110% or setting up a poor foundation with low imaging fidelity for tumor motion study. We developed a method to estimate 4DCT image quality by establishing a correlation between the severity of motion artifacts in 4DCT images and the periodicity of corresponding 1D respiratory wave-function (1DRW) surrogate used for 4DCT reconstruction. Methods: Fast Fourier Transformation (FFT) was applied to analyze 1DRW periodicity, defined as the sum of the 5 largest Fourier coefficients, ranging in 0–1. Distortional motion artifacts of cine-scan 4DCT at the junctions of adjacent couchposition scans around the diaphragm were identified in 3 categories: incomplete, overlapping and duplicate. To quantify these artifacts, the discontinuity of the diaphragm at the junctions was measured in distance and averaged along 6 directions in 3 orthogonal views. Mean and sum artifacts per junction (APJ) across the entire diaphragm were calculated in each breathing phase. To make the APJ inter-patient comparable, patientspecific motion was removed from APJ by dividing patient-specific diaphragmatic velocity (displacement divided by the mean period, from FFT analysis of the 1DRW) and the normalized APJ was defined as motion artifact severity (MAS). Twenty-five patients with free-breathing 10-phase 4DCT and corresponding 1DRW surrogate datasets were studied. Results: A mild correlation of 0.56 was found between 1DRW periodicity and 4DCT artifact severity. Higher MAS tends to appear around mid inhalation and mid exhalation and the lowest MAS tends to be around full exhalation. The breathing periodicity of >0.8 possesses minimal motion artifacts. Conclusion: The 1D-4D correlation provides a fast means to estimate 4DCT image quality. Using 1DRW signal, we can retrospectively screen out high-quality 4DCT images for clinical research (periodicity>0.8) and prospectively identify poor

  20. Digital pathology with Fourier ptychography

    PubMed Central

    Horstmeyer, Roarke; Ou, Xiaoze; Zheng, Guoan; Willems, Phil; Yang, Changhuei

    2015-01-01

    Fourier ptychographic microscopy (FPM) is a recently introduced method of acquiring high-resolution, wide field of view (FOV) giga-pixel histology images. The FPM procedure first acquires a sequence of low-resolution images of a sample under variable-angle illumination. It then combines these images using a novel phase retrieval algorithm to improve the employed microscope’s resolution beyond its conventional limit. Here, we first describe how FPM’s resolution improvement can enhance wide FOV histology imaging. Second, we show that FPM also records a thin sample’s optical phase, which can help pathologists digitally extract as much information as possible from a given histology slide. PMID:25481664

  1. Optical imaging through dynamic turbid media using the Fourier-domain shower-curtain effect

    PubMed Central

    Edrei, Eitan; Scarcelli, Giuliano

    2016-01-01

    Several phenomena have been recently exploited to circumvent scattering and have succeeded in imaging or focusing light through turbid layers. However, the requirement for the turbid medium to be steady during the imaging process remains a fundamental limitation of these methods. Here we introduce an optical imaging modality that overcomes this challenge by taking advantage of the so-called shower-curtain effect, adapted to the spatial-frequency domain via speckle correlography. We present high resolution imaging of objects hidden behind millimeter-thick tissue or dense lens cataracts. We demonstrate our imaging technique to be insensitive to rapid medium movements (> 5 m/s) beyond any biologically-relevant motion. Furthermore, we show this method can be extended to several contrast mechanisms and imaging configurations. PMID:27347498

  2. Improved Fourier-transform profilometry

    SciTech Connect

    Mao Xianfu; Chen Wenjing; Su Xianyu

    2007-02-10

    An improved optical geometry of the projected-fringe profilometry technique, in which the exit pupil of the projecting lens and the entrance pupil of the imaging lens are neither at the same height above the reference plane nor coplanar, is discussed and used in Fourier-transform profilometry. Furthermore, an improved fringe-pattern description and phase-height mapping formula based on the improved geometrical generalization is deduced. Employing the new optical geometry, it is easier for us to obtain the full-field fringe by moving either the projector or the imaging device. Therefore the new method offers a flexible way to obtain reliable height distribution of a measured object.

  3. Writing trace identification using ultraviolet Fourier-transform imaging spectroscopy technique

    NASA Astrophysics Data System (ADS)

    Lyu, Hang; Liao, Ningfang; Wu, Wenmin; Li, Yasheng; Cao, Bin

    2015-08-01

    Conventional identification methods of writing traces commonly utilize imaging or spectroscopic techniques which work in visible to near infrared range or short-wave infrared range. Yet they cannot be applied in identifying the erased writing traces. In this study, we perform a research in identification of erased writing traces applying an ultraviolet Fouriertransform imaging spectrometer. Experiments of classifying the reflected ultraviolet spectra of erasable pens are made. The resulting hyperspectral images demonstrate that the erased writing traces on printing paper can be clearly identified by this ultraviolet imaging spectrometer.

  4. Imaging IR spectrometer, phase 2

    NASA Technical Reports Server (NTRS)

    Gradie, Jonathan; Lewis, Ralph; Lundeen, Thomas; Wang, Shu-I

    1990-01-01

    The development is examined of a prototype multi-channel infrared imaging spectrometer. The design, construction and preliminary performance is described. This instrument is intended for use with JPL Table Mountain telescope as well as the 88 inch UH telescope on Mauna Kea. The instrument is capable of sampling simultaneously the spectral region of 0.9 to 2.6 um at an average spectral resolution of 1 percent using a cooled (77 K) optical bench, a concave holographic grating and a special order sorting filter to allow the acquisition of the full spectral range on a 128 x 128 HgCdTe infrared detector array. The field of view of the spectrometer is 0.5 arcsec/pixel in mapping mode and designed to be 5 arcsec/pixel in spot mode. The innovative optical design has resulted in a small, transportable spectrometer, capable of remote operation. Commercial applications of this spectrometer design include remote sensing from both space and aircraft platforms as well as groundbased astronomical observations.

  5. Evaluation of a new reconstruction algorithm for x-ray phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Seifert, Maria; Hauke, Christian; Horn, Florian; Lachner, Sebastian; Ludwig, Veronika; Pelzer, Georg; Rieger, Jens; Schuster, Max; Wandner, Johannes; Wolf, Andreas; Michel, Thilo; Anton, Gisela

    2016-04-01

    X-ray grating-based phase-contrast imaging might open up entirely new opportunities in medical imaging. However, transferring the interferometer technique from laboratory setups to conventional imaging systems the necessary rigidity of the system is difficult to achieve. Therefore, vibrations or distortions of the system lead to inaccuracies within the phase-stepping procedure. Given insufficient stability of the phase-step positions, up to now, artifacts in phase-contrast images occur, which lower the image quality. This is a problem with regard to the intended use of phase-contrast imaging in clinical routine as for example tiny structures of the human anatomy cannot be observed. In this contribution we evaluate an algorithm proposed by Vargas et.al.1 and applied to X-ray imaging by Pelzer et.al. that enables us to reconstruct a differential phase-contrast image without the knowledge of the specific phase-step positions. This method was tested in comparison to the standard reconstruction by Fourier analysis. The quality of phase-contrast images remains stable, even if the phase-step positions are completely unknown and not uniformly distributed. To also achieve attenuation and dark-field images the proposed algorithm has been combined with a further algorithm of Vargas et al.3 Using this algorithm, the phase-step positions can be reconstructed. With the help of the proper phase-step positions it is possible to get information about the phase, the amplitude and the offset of the measured data. We evaluated this algorithm concerning the measurement of thick objects which show a high absorbency.

  6. Phase retrieval from single frame projection fringe pattern with variational image decomposition

    NASA Astrophysics Data System (ADS)

    Zhu, Xinjun; Tang, Chen; Li, Biyuan; Sun, Chen; Wang, Linlin

    2014-08-01

    Phase retrieval from single frame projection fringe pattern is of fundamental importance, and is also a challenging problem in fringe projection measurement. In this paper, we present a new method for phase retrieval from a single frame projection fringe pattern based on variational image decomposition (VID) methods. We propose a new image decomposition model TV-G-Shearlet in order to effectively split a projection fringe pattern into background part, fringe part and noise part. The performance of the proposed approach is verified by simulated and real projection fringes as well as the comparison with the widely used and well-known Fourier transform method and wavelet transform method.

  7. Image fusion algorithm for differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Roessl, Ewald; Koehler, Thomas; van Stevendaal, Udo; Martens, Gerhard; Hauser, Nik; Wang, Zhentian; Stampanoni, Marco

    2012-03-01

    Differential phase-contrast imaging in the x-ray domain provides three physically complementary signals:1, 2 the attenuation, the differential phase-contrast, related to the refractive index, and the dark-field signal, strongly influenced by the total amount of radiation scattered into very small angles. In medical applications, it is of the utmost importance to present to the radiologist all clinically relevant information in as compact a way as possible. Hence, the need arises for a method to combine two or more of the above mentioned signals into one image containing all information relevant for diagnosis. We present an image composition algorithm that fuses the attenuation image and the differential phase contrast image into a composite, final image based on the assumption that the real and imaginary part of the complex refractive index of the sample can be related by a constant scaling factor. The merging is performed in such a way that the composite image is characterized by minimal noise-power at each frequency component.

  8. Attenuated total reflection Fourier-transform infrared (ATR-FTIR) imaging of tissues and live cells.

    PubMed

    Andrew Chan, K L; Kazarian, Sergei G

    2016-03-29

    FTIR spectroscopic imaging is a label-free, non-destructive and chemically specific technique that can be utilised to study a wide range of biomedical applications such as imaging of biopsy tissues, fixed cells and live cells, including cancer cells. In particular, the use of FTIR imaging in attenuated total reflection (ATR) mode has attracted much attention because of the small, but well controlled, depth of penetration and corresponding path length of infrared light into the sample. This has enabled the study of samples containing large amounts of water, as well as achieving an increased spatial resolution provided by the high refractive index of the micro-ATR element. This review is focused on discussing the recent developments in FTIR spectroscopic imaging, particularly in ATR sampling mode, and its applications in the biomedical science field as well as discussing the future opportunities possible as the imaging technology continues to advance. PMID:26488803

  9. Phase Imaging using Focusing Polycapillary Optics

    NASA Astrophysics Data System (ADS)

    Bashir, Sajid

    The interaction of X rays in diagnostic energy range with soft tissues can be described by Compton scattering and by the complex refractive index, which together characterize the attenuation properties of the tissue and the phase imparted to X rays passing through it. Many soft tissues exhibit extremely similar attenuation, so that their discrimination using conventional radiography, which generates contrast in an image through differential attenuation, is challenging. However, these tissues will impart phase differences significantly greater than attenuation differences to the X rays passing through them, so that phase-contrast imaging techniques can enable their discrimination. A major limitation to the widespread adoption of phase-contrast techniques is that phase contrast requires significant spatial coherence of the X-ray beam, which in turn requires specialized sources. For tabletop sources, this often requires a small (usually in the range of 10-50 micron) X-ray source. In this work, polycapillary optics were employed to create a small secondary source from a large spot rotating anode. Polycapillary optics consist of arrays of small hollow glass tubes through which X rays can be guided by total internal reflection from the tube walls. By tapering the tubes to guide the X rays to a point, they can be focused to a small spot which can be used as a secondary source. The polycapillary optic was first aligned with the X-ray source. The spot size was measured using a computed radiography image plate. Images were taken at a variety of optic-to-object and object-to-detector distances and phase-contrast edge enhancement was observed. Conventional absorption images were also acquired at a small object-to detector distances for comparison. Background division was performed to remove strong non-uniformity due to the optics. Differential phase contrast reconstruction demonstrates promising preliminary results. This manuscript is divided into six chapters. The second

  10. [Research of dual-photoelastic-modulator-based beat frequency modulation and Fourier-Bessel transform imaging spectrometer].

    PubMed

    Wang, Zhi-Bin; Zhang, Rui; Wang, Yao-Li; Huang, Yan-Fei; Chen, You-Hua; Wang, Li-Fu; Yang, Qiang

    2014-02-01

    As the existing photoelastic-modulator(PEM) modulating frequency in the tens of kHz to hundreds of kHz between, leading to frequency of modulated interference signal is higher, so ordinary array detector cannot effectively caprure interference signal..A new beat frequency modulation method based on dual-photoelastic-modulator (Dual-PEM) and Fourier-Bessel transform is proposed as an key component of dual-photoelastic-modulator-based imaging spectrometer (Dual-PEM-IS) combined with charge coupled device (CCD). The dual-PEM are operated as an electro-optic circular retardance modulator, Operating the PEMs at slightly different resonant frequencies w1 and w2 respectively, generates a differential signal at a much lower heterodyne frequency that modulates the incident light. This method not only retains the advantages of the existing PEM, but also the frequency of modulated photocurrent decreased by 2-3 orders of magnitude (10-500 Hz) and can be detected by common array detector, and the incident light spectra can be obtained by Fourier-Bessel transform of low frequency component in the modulated signal. The method makes the PEM has the dual capability of imaging and spectral measurement. The basic principle is introduced, the basic equations is derived, and the feasibility is verified through the corresponding numerical simulation and experiment. This method has' potential applications in imaging spectrometer technology, and analysis of the effect of deviation of the optical path difference. This work provides the necessary theoretical basis for remote sensing of new Dual-PEM-IS and for engineering implementation of spectra inversion. PMID:24822442

  11. High resolution quantitative phase imaging of live cells with constrained optimization approach

    NASA Astrophysics Data System (ADS)

    Pandiyan, Vimal Prabhu; Khare, Kedar; John, Renu

    2016-03-01

    Quantitative phase imaging (QPI) aims at studying weakly scattering and absorbing biological specimens with subwavelength accuracy without any external staining mechanisms. Use of a reference beam at an angle is one of the necessary criteria for recording of high resolution holograms in most of the interferometric methods used for quantitative phase imaging. The spatial separation of the dc and twin images is decided by the reference beam angle and Fourier-filtered reconstructed image will have a very poor resolution if hologram is recorded below a minimum reference angle condition. However, it is always inconvenient to have a large reference beam angle while performing high resolution microscopy of live cells and biological specimens with nanometric features. In this paper, we treat reconstruction of digital holographic microscopy images as a constrained optimization problem with smoothness constraint in order to recover only complex object field in hologram plane even with overlapping dc and twin image terms. We solve this optimization problem by gradient descent approach iteratively and the smoothness constraint is implemented by spatial averaging with appropriate size. This approach will give excellent high resolution image recovery compared to Fourier filtering while keeping a very small reference angle. We demonstrate this approach on digital holographic microscopy of live cells by recovering the quantitative phase of live cells from a hologram recorded with nearly zero reference angle.

  12. Final design of SITELLE: a wide-field imaging Fourier transform spectrometer for the Canada-France-Hawaii Telescope

    NASA Astrophysics Data System (ADS)

    Grandmont, F.; Drissen, L.; Mandar, Julie; Thibault, S.; Baril, Marc

    2012-09-01

    We report here on the current status of SITELLE, an imaging Fourier transform spectrometer to be installed on the Canada-France Hawaii Telescope in 2013. SITELLE is an Integral Field Unit (IFU) spectrograph capable of obtaining the visible (350 nm - 900 nm) spectrum of every pixel of a 2k x 2k CCD imaging a field of view of 11 x 11 arcminutes, with 100% spatial coverage and a spectral resolution ranging from R = 1 (deep panchromatic image) to R < 104 (for gas dynamics). SITELLE will cover a field of view 100 to 1000 times larger than traditional IFUs, such as GMOS-IFU on Gemini or the upcoming MUSE on the VLT. SITELLE follows on the legacy of BEAR, an imaging conversion of the CFHT FTS and the direct successor of SpIOMM, a similar instrument attached to the 1.6-m telescope of the Observatoire du Mont-Mégantic in Québec. SITELLE will be used to study the structure and kinematics of HII regions and ejecta around evolved stars in the Milky Way, emission-line stars in clusters, abundances in nearby gas-rich galaxies, and the star formation rate in distant galaxies.

  13. Ultrahigh speed spectral / Fourier domain OCT ophthalmic imaging at 70,000 to 312,500 axial scans per second.

    PubMed

    Potsaid, Benjamin; Gorczynska, Iwona; Srinivasan, Vivek J; Chen, Yueli; Jiang, James; Cable, Alex; Fujimoto, James G

    2008-09-15

    We demonstrate ultrahigh speed spectral / Fourier domain optical coherence tomography (OCT) using an ultrahigh speed CMOS line scan camera at rates of 70,000 - 312,500 axial scans per second. Several design configurations are characterized to illustrate trade-offs between acquisition speed, resolution, imaging range, sensitivity and sensitivity roll-off performance. Ultrahigh resolution OCT with 2.5 - 3.0 micron axial image resolution is demonstrated at approximately 100,000 axial scans per second. A high resolution spectrometer design improves sensitivity roll-off and imaging range performance, trading off imaging speed to 70,000 axial scans per second. Ultrahigh speed imaging at >300,000 axial scans per second with standard image resolution is also demonstrated. Ophthalmic OCT imaging of the normal human retina is investigated. The high acquisition speeds enable dense raster scanning to acquire densely sampled volumetric three dimensional OCT (3D-OCT) data sets of the macula and optic disc with minimal motion artifacts. Imaging with approximately 8 - 9 micron axial resolution at 250,000 axial scans per second, a 512 x 512 x 400 voxel volumetric 3D-OCT data set can be acquired in only approximately 1.3 seconds. Orthogonal registration scans are used to register OCT raster scans and remove residual axial eye motion, resulting in 3D-OCT data sets which preserve retinal topography. Rapid repetitive imaging over small volumes can visualize small retinal features without motion induced distortions and enables volume registration to remove eye motion. Cone photoreceptors in some regions of the retina can be visualized without adaptive optics or active eye tracking. Rapid repetitive imaging of 3D volumes also provides dynamic volumetric information (4D-OCT) which is shown to enhance visualization of retinal capillaries and should enable functional imaging. Improvements in the speed and performance of 3D-OCT volumetric imaging promise to enable earlier diagnosis and

  14. Quantitative Fourier Domain Optical Coherence Tomography Imaging of the Ocular Anterior Segment

    NASA Astrophysics Data System (ADS)

    McNabb, Ryan Palmer

    Clinical imaging within ophthalmology has had transformative effects on ocular health over the last century. Imaging has guided clinicians in their pharmaceutical and surgical treatments of macular degeneration, glaucoma, cataracts and numerous other pathologies. Many of the imaging techniques currently used are photography based and are limited to imaging the surface of ocular structures. This limitation forces clinicians to make assumptions about the underlying tissue which may reduce the efficacy of their diagnoses. Optical coherence tomography (OCT) is a non-invasive, non-ionizing imaging modality that has been widely adopted within the field of ophthalmology in the last 15 years. As an optical imaging technique, OCT utilizes low-coherence interferometry to produce micron-scale three-dimensional datasets of a tissue's structure. Much of the human body consists of tissues that significantly scatter and attenuate optical signals limiting the imaging depth of OCT in those tissues to only 1-2mm. However, the ocular anterior segment is unique among human tissue in that it is primarily transparent or translucent. This allows for relatively deep imaging of tissue structure with OCT and is no longer limited by the optical scattering properties of the tissue. This goal of this work is to develop methods utilizing OCT that offer the potential to reduce the assumptions made by clinicians in their evaluations of their patients' ocular anterior segments. We achieved this by first developing a method to reduce the effects of patient motion during OCT volume acquisitions allowing for accurate, three dimensional measurements of corneal shape. Having accurate corneal shape measurements then allowed us to determine corneal spherical and astigmatic refractive contribution in a given individual. This was then validated in a clinical study that showed OCT better measured refractive change due to surgery than other clinical devices. Additionally, a method was developed to combine

  15. Analysis of hyper-spectral data derived from an imaging Fourier transform: A statistical perspective

    SciTech Connect

    Sengupta, S.K.; Clark, G.A.; Fields, D.J.

    1996-01-10

    Fourier transform spectrometers (FTS) using optical sensors are increasingly being used in various branches of science. Typically, a FTS generates a three-dimensional data cube with two spatial dimensions and one frequency/wavelength dimension. The number of frequency dimensions in such data cubes is generally very large, often in the hundreds, making data analytical procedures extremely complex. In the present report, the problem is viewed from a statistical perspective. A set of procedures based on the high degree of inter-channel correlation structure often present in such hyper-spectral data, has been identified and applied to an example data set of dimension 100 x 128 x 128 comprising 128 spectral bands. It is shown that in this case, the special eigen-structure of the correlation matrix has allowed the authors to extract just a few linear combinations of the channels (the significant principal vectors) that effectively contain almost all of the spectral information contained in the data set analyzed. This in turn, enables them to segment the objects in the given spatial frame using, in a parsimonious yet highly effective way, most of the information contained in the data set.

  16. Phase correction algorithms for a snapshot hyperspectral imaging system

    NASA Astrophysics Data System (ADS)

    Chan, Victoria C.; Kudenov, Michael; Dereniak, Eustace

    2015-09-01

    We present image processing algorithms that improve spatial and spectral resolution on the Snapshot Hyperspectral Imaging Fourier Transform (SHIFT) spectrometer. Final measurements are stored in the form of threedimensional datacubes containing the scene's spatial and spectral information. We discuss calibration procedures, review post-processing methods, and present preliminary results from proof-of-concept experiments.

  17. Demonstration of Imaging Fourier Transform Spectrometer (FTS) Performance for Planetary and Geostationary Earth Observing

    NASA Technical Reports Server (NTRS)

    Revercomb, Henry E.; Sromovsky, Lawrence A.; Fry, Patrick M.; Best, Fred A.; LaPorte, Daniel D.

    2001-01-01

    The combination of massively parallel spatial sampling and accurate spectral radiometry offered by imaging FTS makes it extremely attractive for earth and planetary remote sensing. We constructed a breadboard instrument to help assess the potential for planetary applications of small imaging FTS instruments in the 1 - 5 micrometer range. The results also support definition of the NASA Geostationary Imaging FTS (GIFTS) instrument that will make key meteorological and climate observations from geostationary earth orbit. The Planetary Imaging FTS (PIFTS) breadboard is based on a custom miniaturized Bomen interferometer that uses corner cube reflectors, a wishbone pivoting voice-coil delay scan mechanism, and a laser diode metrology system. The interferometer optical output is measured by a commercial infrared camera procured from Santa Barbara Focalplane. It uses an InSb 128x128 detector array that covers the entire FOV of the instrument when coupled with a 25 mm focal length commercial camera lens. With appropriate lenses and cold filters the instrument can be used from the visible to 5 micrometers. The delay scan is continuous, but slow, covering the maximum range of +/- 0.4 cm in 37.56 sec at a rate of 500 image frames per second. Image exposures are timed to be centered around predicted zero crossings. The design allows for prediction algorithms that account for the most recent fringe rate so that timing jitter produced by scan speed variations can be minimized. Response to a fixed source is linear with exposure time nearly to the point of saturation. Linearity with respect to input variations was demonstrated to within 0.16% using a 3-point blackbody calibration. Imaging of external complex scenes was carried out at low and high spectral resolution. These require full complex calibration to remove background contributions that vary dramatically over the instrument FOV. Testing is continuing to demonstrate the precise radiometric accuracy and noise characteristics.

  18. Phased Contrast X-Ray Imaging

    ScienceCinema

    Erin Miller

    2012-12-31

    The Pacific Northwest National Laboratory is developing a range of technologies to broaden the field of explosives detection. Phased contrast X-ray imaging, which uses silicon gratings to detect distortions in the X-ray wave front, may be applicable to mail or luggage scanning for explosives; it can also be used in detecting other contraband, small-parts inspection, or materials characterization.

  19. Digitizing Images for Curriculum 21: Phase II.

    ERIC Educational Resources Information Center

    Walker, Alice D.

    Although visual databases exist for the study of art, architecture, geography, health care, and other areas, readily accessible sources of quality images are not available for engineering faculty interested in developing multimedia modules or for student projects. Presented here is a brief review of Phase I of the Engineering Visual Database…

  20. Phase-Scrambler Plate Spreads Point Image

    NASA Technical Reports Server (NTRS)

    Edwards, Oliver J.; Arild, Tor

    1992-01-01

    Array of small prisms retrofit to imaging lens. Phase-scrambler plate essentially planar array of small prisms partitioning aperture of lens into many subapertures, and prism at each subaperture designed to divert relatively large diffraction spot formed by that subaperture to different, specific point on focal plane.

  1. Computer-generated phase-modulated full parallax holographic stereograms without conjugate images

    NASA Astrophysics Data System (ADS)

    Pei, Chuang; Yan, Xingpeng; Jiang, Xiaoyu

    2014-10-01

    A pure phase-modulated computer-generated hologram (CGH) method is presented to generate a full parallax holographic stereogram. The holographic stereogram plane is divided into several two-dimensional holographic elements (hogels). The spectra of the hogels are rendered from multiview full parallax images of three-dimensional (3-D) objects. The phase-modulated hogel is calculated by iterative Fourier transform algorithms to improve diffraction efficiency and eliminate conjugate images. A gray calibration technique is introduced to generate the accurate intensity modulation of pure phase hogels. The holographic stereogram that we proposed is reconstructed by an optical system based on a phase only spatial light modulator. The experimental results demonstrate that our proposed method can successfully reconstruct parallax images of 3-D objects.

  2. Proteoglycan concentrations in healthy and diseased articular cartilage by Fourier transform infrared imaging and principal component regression

    NASA Astrophysics Data System (ADS)

    Yin, Jianhua; Xia, Yang

    2014-12-01

    Fourier transform infrared imaging (FTIRI) combining with principal component regression (PCR) analysis were used to determine the reduction of proteoglycan (PG) in articular cartilage after the transection of the anterior cruciate ligament (ACL). A number of canine knee cartilage sections were harvested from the meniscus-covered and meniscus-uncovered medial tibial locations from the control joints, the ACL joints at three time points after the surgery, and their contralateral joints. The PG loss in the ACL cartilage was related positively to the durations after the surgery. The PG loss in the contralateral knees was less than that of the ACL knees. The PG loss in the meniscus-covered cartilage was less than that of the meniscus-uncovered tissue in both ACL and contralateral knees. The quantitative mapping of PG loss could monitor the disease progression and repair processes in arthritis.

  3. Ruthenium trisbipyridine as a candidate for gas-phase spectroscopic studies in a Fourier transform mass spectrometer

    DOE PAGESBeta

    Scott, Jill R.; Ham, Jason E.; Durham, Bill; Tremblay, Paul L.

    2004-01-01

    Metal polypyridines are excellent candidates for gas-phase optical experiments where their intrinsic properties can be studied without complications due to the presence of solvent. The fluorescence lifetimes of [Ru(bpy) 3 ] 1+ trapped in an optical detection cell within a Fourier transform mass spectrometer were obtained using matrix-assisted laser desorption/ionization to generate the ions with either 2,5-dihydroxybenzoic acid (DHB) or sinapinic acid (SA) as matrix. All transients acquired, whether using DHB or SA for ion generation, were best described as approximately exponential decays. The rate constant for transients derived using DHB as matrix was 4×10 7 s −1 ,more » while the rate constant using SA was 1×10 7 s −1 . Some suggestions of multiple exponential decay were evident although limited by the quality of the signals. Photodissociation experiments revealed that [Ru(bpy) 3 ] 1+ generated using DHB can decompose to [Ru(bpy) 2 ] 1+ , whereas ions generated using SA showed no decomposition. Comparison of the mass spectra with the fluorescence lifetimes illustrates the promise of incorporating optical detection with trapped ion mass spectrometry techniques.« less

  4. Ruthenium Trisbipyridine as a Candidate for Gas-Phase Spectroscopic Studies in a Fourier Transform Mass Spectrometer

    SciTech Connect

    Jill R. Scott; Jason E. Ham; Bill Durham; Paul L. Tremblay

    2004-02-01

    Metal polypyridines are excellent candidates for gas-phase optical experiments where their intrinsic properties can be studied without complications due to the presence of solvent. The fluorescence lifetimes of [Ru(bpy)3]1+ trapped in an optical detection cell within a Fourier transform mass spectrometer were obtained using matrix-assisted laser desorption/ionization to generate the ions with either 2,5-dihydroxybenzoic acid (DHB) or sinapinic acid (SA) as matrix. All transients acquired, whether using DHB or SA for ion generation, were best described as approximately exponential decays. The rate constant for transients derived using DHB as matrix was 4×107 s-1, while the rate constant using SA was 1×107 s-1. Some suggestions of multiple exponential decay were evident although limited by the quality of the signals. Photodissociation experiments revealed that [Ru(bpy)3]1+ generated using DHB can decompose to [Ru(bpy)2]1+, whereas ions generated using SA showed no decomposition. Comparison of the mass spectra with the fluorescence lifetimes illustrates the promise of incorporating optical detection with trapped ion mass spectrometry techniques.

  5. In Vivo 3D Meibography of the Human Eyelid Using Real Time Imaging Fourier-Domain OCT

    PubMed Central

    Hwang, Ho Sik; Shin, Jun Geun; Lee, Byeong Ha; Eom, Tae Joong; Joo, Choun-Ki

    2013-01-01

    Recently, we reported obtaining tomograms of meibomian glands from healthy volunteers using commercial anterior segment optical coherence tomography (AS-OCT), which is widely employed in clinics for examination of the anterior segment. However, we could not create 3D images of the meibomian glands, because the commercial OCT does not have a 3D reconstruction function. In this study we report the creation of 3D images of the meibomian glands by reconstructing the tomograms of these glands using high speed Fourier-Domain OCT (FD-OCT) developed in our laboratory. This research was jointly undertaken at the Department of Ophthalmology, Seoul St. Mary's Hospital (Seoul, Korea) and the Advanced Photonics Research Institute of Gwangju Institute of Science and Technology (Gwangju, Korea) with two healthy volunteers and seven patients with meibomian gland dysfunction. A real time imaging FD-OCT system based on a high-speed wavelength swept laser was developed that had a spectral bandwidth of 100 nm at the 1310 nm center wavelength. The axial resolution was 5 µm and the lateral resolution was 13 µm in air. Using this device, the meibomian glands of nine subjects were examined. A series of tomograms from the upper eyelid measuring 5 mm (from left to right, B-scan) × 2 mm (from upper part to lower part, C-scan) were collected. Three-D images of the meibomian glands were then reconstructed using 3D “data visualization, analysis, and modeling software”. Established infrared meibography was also performed for comparison. The 3D images of healthy subjects clearly showed the meibomian glands, which looked similar to bunches of grapes. These results were consistent with previous infrared meibography results. The meibomian glands were parallel to each other, and the saccular acini were clearly visible. Here we report the successful production of 3D images of human meibomian glands by reconstructing tomograms of these glands with high speed FD-OCT. PMID:23805297

  6. Compression and denoising in magnetic resonance imaging via SVD on the Fourier domain using computer algebra

    NASA Astrophysics Data System (ADS)

    Díaz, Felipe

    2015-09-01

    Magnetic resonance (MR) data reconstruction can be computationally a challenging task. The signal-to-noise ratio might also present complications, especially with high-resolution images. In this sense, data compression can be useful not only for reducing the complexity and memory requirements, but also to reduce noise, even to allow eliminate spurious components.This article proposes the use of a system based on singular value decomposition of low order for noise reconstruction and reduction in MR imaging system. The proposed method is evaluated using in vivo MRI data. Rebuilt images with less than 20 of the original data and with similar quality in terms of visual inspection are presented. Also a quantitative evaluation of the method is presented.

  7. Demonstration of imaging Fourier Transform Spectrometer (FTS) performance for planetary and geostationary Earth observing

    NASA Astrophysics Data System (ADS)

    Revercomb, Henry E.; Sromovsky, Lawrence A.; Fry, Patrick M.; Best, Fred A.; LaPorte, Daniel D.

    2001-02-01

    The combination of massively parallel spatial sampling and accurate spectral radiometry offered by imaging FTS makes it extremely attractive for earth and planetary remote sensing. We constructed a breadboard instrument to help assess the potential for planetary applications of small imaging FTS instruments in the 1-5 micrometers range. The results also support definition of the NASA Geostationary Imaging FTS instrument that will make key meteorological and climate observations from geostationary earth orbit. The PIFTS pivoting voice- coil delay scan mechanism, and laser diode metrology system. The interferometer optical output is measured by a commercial IR camera procured from Santa Barbara Focal plane. It uses an InSb 128 by 128 detector array that covers the entire FOV of the instrument when coupled with a 25-mm focal length commercial camera lens. With appropriate lenses and cold filters the instrument can be used from the visible to 5 micrometers . The delay scan is continuos, but slow, covering the maximum range of +/- 0.4 cm in 37.56 sec at a rate of 500 image frames per second. Image exposures are timed to be centered around predicted zero crossings. The design allows for prediction algorithms that account for the most recent fringe rate so that timing jitter produced by scan speed variations can be minimized. Response to a fixed source is linear with exposure time nearly to the point of saturation. Linearity with respect to input variations was demonstrated to within 0.16 percent using a 3-point blackbody calibration. Imaging of external complex scenes was carried out at low and high spectral resolution. These require full complex calibration to remove background contributions that vary dramatically over the instrument FOV. Testing is continuing to demonstrate the precise radiometric accuracy and noise characteristics.

  8. Picometer registration of zinc impurity states in Bi2Sr2CaCu2O8+δ for phase determination in intra-unit-cell Fourier transform STM

    NASA Astrophysics Data System (ADS)

    Hamidian, M. H.; Firmo, I. A.; Fujita, K.; Mukhopadhyay, S.; Orenstein, J. W.; Eisaki, H.; Uchida, S.; Lawler, M. J.; Kim, E.-A.; Davis, J. C.

    2012-05-01

    Direct visualization of electronic-structure symmetry within each crystalline unit cell is a new technique for complex electronic matter research (Lawler et al 2010 Nature 466 347-51, Schmidt et al 2011 New J. Phys. 13 065014, Fujita K et al 2012 J. Phys. Soc. Japan 81 011005). By studying the Bragg peaks in Fourier transforms of electronic structure images and particularly by resolving both the real and imaginary components of the Bragg amplitudes, distinct types of intra-unit-cell symmetry breaking can be studied. However, establishing the precise symmetry point of each unit cell in real space is crucial in defining the phase for such a Bragg-peak Fourier analysis. Exemplary of this challenge is the high-temperature superconductor Bi2Sr2CaCu2O8+δ for which the surface Bi atom locations are observable, while it is the invisible Cu atoms that define the relevant CuO2 unit-cell symmetry point. Here we demonstrate, by imaging with picometer precision the electronic impurity states at individual Zn atoms substituted at Cu sites, that the phase established using the Bi lattice produces a ˜2%(2π) error relative to the actual Cu lattice. Such a phase assignment error would not diminish reliability in the determination of intra-unit-cell rotational symmetry breaking at the CuO2 plane (Lawler et al 2010 Nature 466 347-51, Schmidt et al 2011 New J. Phys. 13 065014, Fujita K et al 2012 J. Phys. Soc. Japan 81 011005). Moreover, this type of impurity atom substitution at the relevant symmetry site can be of general utility in phase determination for the Bragg-peak Fourier analysis of intra-unit-cell symmetry.

  9. Fourier Transform Infrared Spectroscopy for Identification and Quantification of Organic Functional Groups in Aqueous Phase Secondary Organic Aerosol

    NASA Astrophysics Data System (ADS)

    George, K.; Ruthenburg, T. C.; Smith, J.; Anastasio, C.; Dillner, A. M.

    2011-12-01

    Particles in the atmosphere influence visibility, climate, and human health. Secondary organic aerosols (SOA) formed from chemical reactions in the atmosphere constitute a portion of total organic particle mass. Most research on SOA has focused on gas phase reactions; however, reactions taking place in cloud and fog drops may be significant. One group of water-soluble compounds that participate in these reactions is phenols. Phenols, emitted from biomass burning, react in the aqueous phase to form low-volatility SOA products. The products formed from these reactions are currently poorly characterized. In order to characterize laboratory-generated samples, we are developing an attenuated total reflectance-Fourier transform infrared spectroscopic (ATR-FTIR) technique to identify and quantify organic functional groups in SOA. Aqueous SOA is made in the laboratory by illuminating solutions of phenolic compounds with an oxidant. The illuminated solution is then blown to dryness in order to determine the mass of SOA produced. The dry SOA is reconstituted in water and drops of this solution are placed onto a single-reflection ATR accessory. In order to identify and quantify functional groups in the complex SOA samples, it is necessary to calibrate with compounds and mixtures of compounds containing bond types similar to those found in the laboratory-generated SOA. Initially, focus has been placed on multiple peaks located in the region between 1800 cm-1 and 800 cm-1, including peaks for C=O and C-O. We distinguish between characteristic absorbances to begin determining the organic functional group composition of the SOA samples. This ATR-FTIR technique complements information from mass spectrometry measurements and allows us to quantify organic mass for non-volatile SOA products.

  10. Dithranol as a MALDI matrix for tissue imaging of lipids by Fourier transform ion cyclotron resonance mass spectrometry.

    PubMed

    Le, Cuong H; Han, Jun; Borchers, Christoph H

    2012-10-01

    To fill the unmet need for improved matrixes for matrix-assisted laser desorption ionization (MALDI) tissue imaging of small molecules, dithranol (DT)--a matrix mainly used for the analysis of synthetic polymers--was evaluated for detection of lipids in rat liver and bovine calf lens, using MALDI Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS). The use of DT resulted in better detection of endogenous lipids than did two other commonly used matrixes, α-cyano-4-hydroxycinnamic acid (CHCA) and 2,5-dihydroxybenzoic acid (DHB), with >70 lipid entities (including phosphatidylcholines, phosphatidylethanolamines, sphingomyelins, phosphatidylserines, phosphatidylglycerol, phosphatidic acids, ceramide phosphates, sterol lipids, acyl carnitines, and glycerides) being detected in rat liver and bovine lens tissue sections, using positive-ion detection. Using saturated DT in chloroform/methanol (2:1, v/v), with 1% formic acid in the final mixture, 57 lipid entities were successfully imaged from bovine calf lens, with clear and distinct distribution patterns. In a section across the lens equatorial plane, all compounds showed concentric distributions around the lens nucleus and most showed specific abundance changes, which correlated with lens fiber cell age. As a novel finding, palmitoylcarnitine and oleoylcarnitine were found uniquely localized to the younger lens fiber cell cortex region. This work demonstrates the potential of DT as a new matrix for tissue imaging by MALDI-FTICR MS. PMID:22931516

  11. Ground-Based Measurement Experiment and First Results with Geosynchronous-Imaging Fourier Transform Spectrometer Engineering Demonstration Unit

    NASA Technical Reports Server (NTRS)

    Zhou, Daniel K.; Smith, William L.; Bingham, Gail E.; Huppi, Ronald J.; Revercomb, Henry E.; Zollinger, Lori J.; Larar, Allen M.; Liu, Xu; Tansock, Joseph J.; Reisse, Robert A.; Hooker, Ronald

    2007-01-01

    The geosynchronous-imaging Fourier transform spectrometer (GIFTS) engineering demonstration unit (EDU) is an imaging infrared spectrometer designed for atmospheric soundings. It measures the infrared spectrum in two spectral bands (14.6 to 8.8 microns, 6.0 to 4.4 microns) using two 128 x 128 detector arrays with a spectral resolution of 0.57 cm(exp -1) with a scan duration of approximately 11 seconds. From a geosynchronous orbit, the instrument will have the capability of taking successive measurements of such data to scan desired regions of the globe, from which atmospheric status, cloud parameters, wind field profiles, and other derived products can be retrieved. The GIFTS EDU provides a flexible and accurate testbed for the new challenges of the emerging hyperspectral era. The EDU ground-based measurement experiment, held in Logan, Utah during September 2006, demonstrated its extensive capabilities and potential for geosynchronous and other applications (e.g., Earth observing environmental measurements). This paper addresses the experiment objectives and overall performance of the sensor system with a focus on the GIFTS EDU imaging capability and proof of the GIFTS measurement concept.

  12. Development of a practical spatial-spectral analysis protocol for breast histopathology using Fourier transform infrared spectroscopic imaging.

    PubMed

    Pounder, F Nell; Reddy, Rohith K; Bhargava, Rohit

    2016-06-23

    Breast cancer screening provides sensitive tumor identification, but low specificity implies that a vast majority of biopsies are not ultimately diagnosed as cancer. Automated techniques to evaluate biopsies can prevent errors, reduce pathologist workload and provide objective analysis. Fourier transform infrared (FT-IR) spectroscopic imaging provides both molecular signatures and spatial information that may be applicable for pathology. Here, we utilize both the spectral and spatial information to develop a combined classifier that provides rapid tissue assessment. First, we evaluated the potential of IR imaging to provide a diagnosis using spectral data alone. While highly accurate histologic [epithelium, stroma] recognition could be achieved, the same was not possible for disease [cancer, no-cancer] due to the diversity of spectral signals. Hence, we employed spatial data, developing and evaluating increasingly complex models, to detect cancers. Sub-mm tumors could be very confidently predicted as indicated by the quantitative measurement of accuracy via receiver operating characteristic (ROC) curve analyses. The developed protocol was validated with a small set and statistical performance used to develop a model that predicts study design for a large scale, definitive validation. The results of evaluation on different instruments, at higher noise levels, under a coarser spectral resolution and two sampling modes [transmission and transflection], indicate that the protocol is highly accurate under a variety of conditions. The study paves the way to validating IR imaging for rapid breast tumor detection, its statistical validation and potential directions for optimization of the speed and sampling for clinical deployment. PMID:27095431

  13. Tests of various colorants for application of a Fourier transform infrared imaging system to deciphering obliterated writings

    NASA Astrophysics Data System (ADS)

    Sugawara, Shigeru

    2015-10-01

    Obliterated writing is writing that has been obscured by different-colored materials. There are obliterated writings that cannot be detected by conventional methods. A method for deciphering such obliterated writings was developed in this study. Mid-infrared spectroscopic imaging in the wavelength range of 2.5-14 μm was used for deciphering because the infrared spectrum differs among different brands of colorants. Obliterated writings were made by pressing information protection stamps onto characters written by 4 kinds of colorants. The samples were tested for deciphering by the Fourier-transform infrared imaging system. Two peak areas of two specific wavenumber regions of each reflectance spectrum were calculated and the ratio of the two values is displayed as a unique gray scale in the spectroscopic image. As a result, the absorption peak at various wavenumbers could be used to decipher obliterated writings that could not be detected by the conventional methods. Ten different parameters for deciphering obliterated writing were found in this study.

  14. Megahertz OCT for ultrawide-field retinal imaging with a 1050 nm Fourier domain mode-locked laser.

    PubMed

    Klein, Thomas; Wieser, Wolfgang; Eigenwillig, Christoph M; Biedermann, Benjamin R; Huber, Robert

    2011-02-14

    We demonstrate ultrahigh speed swept source retinal OCT imaging using a Fourier domain mode locked (FDML) laser. The laser uses a combination of a semiconductor optical amplifier and an ytterbium doped fiber amplifier to provide more than 50 mW output power. The 1050 nm FDML laser uses standard telecom fiber for the km long delay line instead of two orders of magnitude more expensive real single mode fiber. We investigate the influence of this "oligo-mode" fiber on the FDML laser performance. Two design configurations with 684,400 and 1,368,700 axial scans per second are investigated, 25x and 50x faster than current commercial instruments and more than 4x faster than previous single spot ophthalmic results. These high speeds enable the acquisition of densely sampled ultrawide-field data sets of the retina within a few seconds. Ultrawide-field data consisting of 1900 x 1900 A-scans with ~70° angle of view are acquired within only 3 and 6 seconds using the different setups. Such OCT data sets, more than double as large as previously reported, are collapsed to a 4 megapixel high definition fundus image. We achieve good penetration into the choroid by hardware spectral shaping of the laser output. The axial resolution in tissue is 12 µm (684 kHz) and 19 µm (1.37 MHz). A series of new data processing and imaging extraction protocols, enabled by the ultrawide-field isotropic data sets, are presented. Dense isotropic sampling enables both, cross-sectional images along arbitrary coordinates and depth-resolved en-face fundus images. Additionally, we investigate how isotropic averaging compares to the averaging of cross-sections along the slow axis. PMID:21369128

  15. Improved Two-Dimensional Millimeter-Wave Imaging for Concealed Weapon Detection Through Partial Fourier Sampling

    NASA Astrophysics Data System (ADS)

    Farsaei, Amir Ashkan; Mokhtari-Koushyar, Farzad; Javad Seyed-Talebi, Seyed Mohammad; Kavehvash, Zahra; Shabany, Mahdi

    2016-03-01

    Active millimeter-wave imaging based on synthetic aperture focusing offers certain unique and practical advantages in nondestructive testing applications. Traditionally, the imaging for this purpose is performed through a long procedure of raster scanning with a single antenna across a two-dimensional grid, leading to a slow, bulky, and expensive scanning platform. In this paper, an improved bistatic structure based on radial compressive sensing is proposed, where one fixed transmitter antenna and a linear array of receiving antennas are used. The main contributions of this paper are (a) reducing the scanning time, (b) improving the output quality, and (c) designing an inexpensive setup. These improvements are the result of the underlying proposed simpler scanning structure and faster reconstruction process.

  16. Cardiac phase detection in intravascular ultrasound images

    NASA Astrophysics Data System (ADS)

    Matsumoto, Monica M. S.; Lemos, Pedro Alves; Yoneyama, Takashi; Furuie, Sergio Shiguemi

    2008-03-01

    Image gating is related to image modalities that involve quasi-periodic moving organs. Therefore, during intravascular ultrasound (IVUS) examination, there is cardiac movement interference. In this paper, we aim to obtain IVUS gated images based on the images themselves. This would allow the reconstruction of 3D coronaries with temporal accuracy for any cardiac phase, which is an advantage over the ECG-gated acquisition that shows a single one. It is also important for retrospective studies, as in existing IVUS databases there are no additional reference signals (ECG). From the images, we calculated signals based on average intensity (AI), and, from consecutive frames, average intensity difference (AID), cross-correlation coefficient (CC) and mutual information (MI). The process includes a wavelet-based filter step and ascendant zero-cross detection in order to obtain the phase information. Firstly, we tested 90 simulated sequences with 1025 frames each. Our method was able to achieve more than 95.0% of true positives and less than 2.3% of false positives ratio, for all signals. Afterwards, we tested in a real examination, with 897 frames and ECG as gold-standard. We achieved 97.4% of true positives (CC and MI), and 2.5% of false positives. For future works, methodology should be tested in wider range of IVUS examinations.

  17. Quantitative phase imaging through scattering media

    NASA Astrophysics Data System (ADS)

    Kollárová, Vera; Colláková, Jana; Dostál, Zbynek; Slabý, Tomas; Veselý, Pavel; Chmelík, Radim

    2015-03-01

    Coherence-controlled holographic microscope (CCHM) is an off-axis holographic system. It enables observation of a sample and its quantitative phase imaging with coherent as well as with incoherent illumination. The spatial and temporal coherence can be modified and thus also the quality and type of the image information. The coherent illumination provides numerical refocusing in wide depth range similarly to a classic coherent-light digital holographic microscopy (HM). Incoherent-light HM is characterized by a high quality, coherence-noise-free imaging with up to twice higher resolution compared to coherent illumination. Owing to an independent, free of sample reference arm of the CCHM the low spatial light coherence induces coherence-gating effect. This makes possible to observe specimen also through scattering media. We have described theoretically and simulated numerically imaging of a two dimensional object through a scattering layer by CCHM using the linear systems theory. We have investigated both strongly and weakly scattering media characterized by different amount of ballistic and diffuse light. The influence of a scattering layer on the quality of a phase signal is discussed for both types of the scattering media. A strong dependence of the imaging process on the light coherence is demonstrated. The theoretical calculations and numerical simulations are supported by experimental data gained with model samples, as well as real biologic objects particularly then by time-lapse observations of live cells reactions to substances producing optically turbid emulsion.

  18. Extending Single-Molecule Microscopy Using Optical Fourier Processing

    PubMed Central

    2015-01-01

    This article surveys the recent application of optical Fourier processing to the long-established but still expanding field of single-molecule imaging and microscopy. A variety of single-molecule studies can benefit from the additional image information that can be obtained by modulating the Fourier, or pupil, plane of a widefield microscope. After briefly reviewing several current applications, we present a comprehensive and computationally efficient theoretical model for simulating single-molecule fluorescence as it propagates through an imaging system. Furthermore, we describe how phase/amplitude-modulating optics inserted in the imaging pathway may be modeled, especially at the Fourier plane. Finally, we discuss selected recent applications of Fourier processing methods to measure the orientation, depth, and rotational mobility of single fluorescent molecules. PMID:24745862

  19. Synthesized Bistatic Echo Imaging Using Phased Arrays

    NASA Astrophysics Data System (ADS)

    Soumekh, Mehrdad

    1990-01-01

    An object illuminated by a source produces a scattered signal; this signal depends upon both the source and the physical properties of the object. The problem of deducing coordinates, shape and/or certain physical properties of the object from the measurements of the returned signal is an inverse problem called echo imaging. The problem of echo imaging arises in medical imaging, remote sensing (radar; sonar; geophysical exploration), and non-destructive testing. In this paper, we address the problem of imaging an object form its returned signals using a phased array. Our approach is to exploit the array's various radiation patterns and the recordable portion of the returned signal's spectrum to generate the data base for this echo imaging system. Rapid steering of a phased array's radiation patterns can be achieved electronically. These steered waves can be utilized to synthesize waves with varying angles of propagation. In this case, the recorded returned signal for each direction of propagation can be viewed as data obtained by a bistatic array configuration. We first formulate the imaging problem for a plane wave source in a bistatic configuration. We utilize the two-way propagation time and amplitude of the returned signal to relate the object's properties, reflectivity function and coordinates, to the measured data (system modeling). This relationship is the basis for deducing the object's reflectivity function from the recorded data (inverse problem). We then extend these results for an arbitrary radiation pattern and synthesized radiation patterns generated by an array capable of beam steering in cross-range. We show that the recorded returned signals can be related to the spatial frequency contents of the reflectivity function. We also show that these array processing principles can be utilized to formulate a system model and inversion for synthetic aperture radar (SAR) imaging that incorporates wavefront curvature.

  20. Balloon Demonstrator Imaging Fourier Transform Spectrometer for the Measurement of Methane and Carbon Dioxide over the Arctic

    NASA Astrophysics Data System (ADS)

    McElroy, C. T.; Walker, K. A.; Vaziri, Z.; Moeini, O.; Martin, R.

    2014-12-01

    The Arctic multi-year ice cover is disappearing more rapidly than climate models estimate and the Arctic climate is also changing. With declining ice cover, the Arctic Ocean will likely be subject to increased shipping traffic in addition to exploration activity for natural resources with a concomitant increase in air pollution. Thus, there is a multifaceted need to monitor the polar region. A number of Canadian government departments, led by the Canadian Space Agency (CSA), are proposing the Polar Communications and Weather (PCW) mission to provide improved communications and critically important meteorological and air quality information for the Arctic using an operational meteorological imager. Two satellites in highly eccentric orbits with apogees at ~ 40,000 km over the Arctic would provide quasi-geostationary viewing over the Arctic with 24-7 coverage in the IR and measurements using solar reflected light in the summertime. The planned operational meteorological instrument is a 21-channel spectral imager with UV, visible, NIR and MIR channels similar to MODIS and ABI. This presentation will focus on the development of an Imaging Fourier Transform Spectrometer (IFTS) to be flown on a high-altitude balloon to demonstrate the capacity to monitor methane and carbon dioxide in the Arctic as part of the PHEOS-WCA (Weather, Climate and Air quality) mission, which is an atmospheric science complement to the operational PCW mission.Funding is now in place to develop the demonstrator IFTS to show that images of methane and carbon dioxide can be collected from space. The characteristics of the instrument and plans for the balloon flight will be discussed and details of the full PCW mission and PHEOS-WCA component will be presented. The author wishes to acknowledge the support of the PHEOS-WCA science team.

  1. Imaging retinal degeneration in mice by combining Fourier domain optical coherence tomography and fluorescent scanning laser ophthalmoscopy

    NASA Astrophysics Data System (ADS)

    Hossein-Javaheri, Nima; Molday, Laurie L.; Xu, Jing; Molday, Robert S.; Sarunic, Marinko V.

    2009-02-01

    Visualization of the internal structures of the retina is critical for clinical diagnosis and monitoring of pathology as well as for medical research investigating the root causes of retinal degeneration. Optical Coherence Tomography (OCT) is emerging as the preferred technique for non-contact sub-surface depth-resolved imaging of the retina. The high resolution cross sectional images acquired in vivo by OCT can be compared to histology to visually delineate the retinal layers. The recent demonstration of the significant sensitivity increase obtained through use of Fourier domain (FD) detection with OCT has been used to facilitate high speed scanning for volumetric reconstruction of the retina in software. The images acquired by OCT are purely structural, relying on refractive index differences in the tissue for contrast, and do not provide information on the molecular content of the sample. We have constructed a FDOCT prototype and combined it with a fluorescent Scanning Laser Ophthalmoscope (fSLO) to permit real time alignment of the field of view on the retina. The alignment of the FDOCT system to the specimen is crucial for the registration of measurements taken throughout longitudinal studies. In addition, fluorescence detection has been integrated with the SLO to enable the en face localization of a molecular contrast signal, which is important for retinal angiography, and also for detection of autofluorescence associated with some forms of retinal degeneration, for example autofluorescence lipofuscin accumulations are associated with Stargardt's Macular Dystrophy. The integrated FD OCT/fSLO system was investigated for imaging the retina of the mice in vivo.

  2. Toward Fourier interferometry fluorescence excitation/emission imaging of malignant cells combined with photoacoustic microscopy

    NASA Astrophysics Data System (ADS)

    Kohen, Elli; Hirschberg, Joseph G.; Berry, John P.; Ozkutuk, Nuri; Ornek, Ceren; Monti, Marco; Leblanc, Roger M.; Schachtschabel, Dietrich O.; Haroon, Sumaira

    2003-10-01

    Dual excitation fluorescence imaging has been used as a first step towards multi-wavelength excitation/emission fluorescence spectral imaging. Target cells are transformed keratinocytes, and other osteosarcoma, human breast and color cancer cells. Mitochondrial membrane potential probes, e.g. TMRM (tetramethylrhodamine methyl ester), Mitotracker Green (Molecular Probes, Inc., Eugene OR,USA; a recently synthesized mitochondrial oxygen probe, [PRE,P1"- pyrene butyl)-2-rhodamine ester] allow dual excitation in the UV plus in teh blue-green spectral regions. Also, using the natural endogenous probe NAD(P)H, preliminary results indicate mitochondrial responses to metabolic challenges (e.g. glucose addition), plus changes in mitochonrial distribution and morphology. In terms of application to biomedicine (for diagnostiscs, prognostsics and drug trials) three parameters have been selected in addition to the natural probe NAD(P)H, i.e. vital fluorescence probing of mitochondria, lysosomes and Golgi apparatus. It is hoped that such a multiparameter approach will allow malignant cell characterization and grading. A new area being introduced is the use of similar methodology for biotechnical applications such as the study of the hydrogen-producing alga Chlamydomonas Reinhardtii, and possible agricultural applications, such as Saccharomyces yeast for oenology. Complementation by Photoacoustic Microscopy is also contemplated, to study the internal conversion component which follows the excitation by photons.

  3. Generalized fiber Fourier optics.

    PubMed

    Cincotti, Gabriella

    2011-06-15

    A twofold generalization of the optical schemes that perform the discrete Fourier transform (DFT) is given: new passive planar architectures are presented where the 2 × 2 3 dB couplers are replaced by M × M hybrids, reducing the number of required connections and phase shifters. Furthermore, the planar implementation of the discrete fractional Fourier transform (DFrFT) is also described, with a waveguide grating router (WGR) configuration and a properly modified slab coupler. PMID:21686007

  4. Imaging of Osteoarthritic Human Articular Cartilage using Fourier Transform Infrared Microspectroscopy Combined with Multivariate and Univariate Analysis.

    PubMed

    Oinas, J; Rieppo, L; Finnilä, M A J; Valkealahti, M; Lehenkari, P; Saarakkala, S

    2016-01-01

    The changes in chemical composition of human articular cartilage (AC) caused by osteoarthritis (OA) were investigated using Fourier transform infrared microspectroscopy (FTIR-MS). We demonstrate the sensitivity of FTIR-MS for monitoring compositional changes that occur with OA progression. Twenty-eight AC samples from tibial plateaus were imaged with FTIR-MS. Hyperspectral images of all samples were combined for K-means clustering. Partial least squares regression (PLSR) analysis was used to compare the spectra with the OARSI grade (histopathological grading of OA). Furthermore, the amide I and the carbohydrate regions were used to estimate collagen and proteoglycan contents, respectively. Spectral peak at 1338 cm(-1) was used to estimate the integrity of the collagen network. The layered structure of AC was revealed using the carbohydrate region for clustering. Statistically significant correlation was observed between the OARSI grade and the collagen integrity in the superficial (r = -0.55) and the deep (r = -0.41) zones. Furthermore, PLSR models predicted the OARSI grade from the superficial (r = 0.94) and the deep (r = 0.77) regions of the AC with high accuracy. Obtained results suggest that quantitative and qualitative changes occur in the AC composition during OA progression, and these can be monitored by the use of FTIR-MS. PMID:27445254

  5. Vacuum compatible sample positioning device for matrix assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry imaging

    PubMed Central

    Aizikov, Konstantin; Smith, Donald F.; Chargin, David A.; Ivanov, Sergei; Lin, Tzu-Yung; Heeren, Ron M. A.; O’Connor, Peter B.

    2011-01-01

    The high mass accuracy and resolving power of Fourier transform ion cyclotron resonance mass spectrometers (FT-ICR MS) make them ideal mass detectors for mass spectrometry imaging (MSI), promising to provide unmatched molecular resolution capabilities. The intrinsic low tolerance of FT-ICR MS to RF interference, however, along with typically vertical positioning of the sample, and MSI acquisition speed requirements present numerous engineering challenges in creating robotics capable of achieving the spatial resolution to match. This work discusses a two-dimensional positioning stage designed to address these issues. The stage is capable of operating in ∼1 × 10–8 mbar vacuum. The range of motion is set to 100 mm × 100 mm to accommodate large samples, while the positioning accuracy is demonstrated to be less than 0.4 micron in both directions under vertical load over the entire range. This device was integrated into three different matrix assisted laser desorption/ionization (MALDI) FT-ICR instruments and showed no detectable RF noise. The “oversampling” MALDI-MSI experiments, under which the sample is completely ablated at each position, followed by the target movement of the distance smaller than the laser beam, conducted on the custom-built 7T FT-ICR MS demonstrate the stability and positional accuracy of the stage robotics which delivers high spatial resolution mass spectral images at a fraction of the laser spot diameter. PMID:21639522

  6. Ultrafast nuclear dynamics in halomethanes studied with time-resolved Coulomb explosion imaging and channel-selective Fourier spectroscopy

    NASA Astrophysics Data System (ADS)

    Malakar, Y.; Kaderiya, B.; Pearson, W. L.; Ziaee, F.; Kanaka Raju, P.; Zohrabi, M.; Jensen, K.; Rajput, J.; Ben-Itzhak, I.; Rolles, D.; Rudenko, A.

    2016-05-01

    Halomethanes have recently attracted considerable attention since they often serve as prototype systems for laser-controlled chemistry (e.g., selective bond breaking or concerted elimination reactions), and are important molecules in atmospheric chemistry. Here we combine a femtosecond laser pump-probe setup with coincident 3D ion momentum imaging apparatus to study strong-field induced nuclear dynamics in methane and several of its halogenated derivatives (CH3 I, CH2 I2, CH2 ICl). We apply a time-resolved Coulomb explosion imaging technique to map the nuclear motion on both, bound and continuum potential surfaces, disentangle different fragmentation pathways and, for halogenated molecules, observe clear signatures of vibrational wave packets in neutral or ionized states. Channel-selective and kinetic-energy resolved Fourier analysis of these data allows for unique identification of different electronic states and vibrational modes responsible for a particular structure. Supported by the Chemical Sciences, Geosciences, and Biosciences Division, Office of Basic Energy Sciences, Office of Science, U. S. DOE. K. R. P. and W. L. P. supported by NSF Award No. IIA-143049. K.J. supported by the NSF-REU Grant No. PHYS-1461251.

  7. Fourier Transform Infrared Imaging Showing Reduced Unsaturated Lipid Content in the Hippocampus of a mouse Model of Alzheimer's Disease

    SciTech Connect

    Leskovjan, A.C.; Kretlow, A.; Miller, L.M.

    2010-04-01

    Polyunsaturated fatty acids are essential to brain functions such as membrane fluidity, signal transduction, and cell survival. It is also thought that low levels of unsaturated lipid in the brain may contribute to Alzheimer's disease (AD) risk or severity. However, it is not known how accumulation of unsaturated lipids is affected in different regions of the hippocampus, which is a central target of AD plaque pathology, during aging. In this study, we used Fourier transform infrared imaging (FTIRI) to visualize the unsaturated lipid content in specific regions of the hippocampus in the PSAPP mouse model of AD as a function of plaque formation. Specifically, the unsaturated lipid content was imaged using the olefinic {double_bond}CH stretching mode at 3012 cm{sup -1}. The axonal, dendritic, and somatic layers of the hippocampus were examined in the mice at 13, 24, 40, and 56 weeks old. Results showed that lipid unsaturation in the axonal layer was significantly increased with normal aging in control (CNT) mice (p < 0.01) but remained low and relatively constant in PSAPP mice. Thus, these findings indicate that unsaturated lipid content is reduced in hippocampal white matter during amyloid pathogenesis and that maintaining unsaturated lipid content early in the disease may be critical in avoiding progression of the disease.

  8. Investigating the biochemical progression of liver disease through fibrosis, cirrhosis, dysplasia, and hepatocellular carcinoma using Fourier transform infrared spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Sreedhar, Hari; Pant, Mamta; Ronquillo, Nemencio R.; Davidson, Bennett; Nguyen, Peter; Chennuri, Rohini; Choi, Jacqueline; Herrera, Joaquin A.; Hinojosa, Ana C.; Jin, Ming; Kajdacsy-Balla, Andre; Guzman, Grace; Walsh, Michael J.

    2014-03-01

    Hepatocellular carcinoma (HCC) is the most common form of primary hepatic carcinoma. HCC ranks the fourth most prevalent malignant tumor and the third leading cause of cancer related death in the world. Hepatocellular carcinoma develops in the context of chronic liver disease and its evolution is characterized by progression through intermediate stages to advanced disease and possibly even death. The primary sequence of hepatocarcinogenesis includes the development of cirrhosis, followed by dysplasia, and hepatocellular carcinoma.1 We addressed the utility of Fourier Transform Infrared (FT-IR) spectroscopic imaging, both as a diagnostic tool of the different stages of the disease and to gain insight into the biochemical process associated with disease progression. Tissue microarrays were obtained from the University of Illinois at Chicago tissue bank consisting of liver explants from 12 transplant patients. Tissue core biopsies were obtained from each explant targeting regions of normal, liver cell dysplasia including large cell change and small cell change, and hepatocellular carcinoma. We obtained FT-IR images of these tissues using a modified FT-IR system with high definition capabilities. Firstly, a supervised spectral classifier was built to discriminate between normal and cancerous hepatocytes. Secondly, an expanded classifier was built to discriminate small cell and large cell changes in liver disease. With the emerging advances in FT-IR instrumentation and computation there is a strong drive to develop this technology as a powerful adjunct to current histopathology approaches to improve disease diagnosis and prognosis.

  9. Vacuum compatible sample positioning device for matrix assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry imaging

    SciTech Connect

    Aizikov, Konstantin; Lin, Tzu-Yung; Smith, Donald F.; Heeren, Ron M. A.; Chargin, David A.; Ivanov, Sergei; O'Connor, Peter B.

    2011-05-15

    The high mass accuracy and resolving power of Fourier transform ion cyclotron resonance mass spectrometers (FT-ICR MS) make them ideal mass detectors for mass spectrometry imaging (MSI), promising to provide unmatched molecular resolution capabilities. The intrinsic low tolerance of FT-ICR MS to RF interference, however, along with typically vertical positioning of the sample, and MSI acquisition speed requirements present numerous engineering challenges in creating robotics capable of achieving the spatial resolution to match. This work discusses a two-dimensional positioning stage designed to address these issues. The stage is capable of operating in {approx}1 x 10{sup -8} mbar vacuum. The range of motion is set to 100 mm x 100 mm to accommodate large samples, while the positioning accuracy is demonstrated to be less than 0.4 micron in both directions under vertical load over the entire range. This device was integrated into three different matrix assisted laser desorption/ionization (MALDI) FT-ICR instruments and showed no detectable RF noise. The ''oversampling'' MALDI-MSI experiments, under which the sample is completely ablated at each position, followed by the target movement of the distance smaller than the laser beam, conducted on the custom-built 7T FT-ICR MS demonstrate the stability and positional accuracy of the stage robotics which delivers high spatial resolution mass spectral images at a fraction of the laser spot diameter.

  10. Imaging of Osteoarthritic Human Articular Cartilage using Fourier Transform Infrared Microspectroscopy Combined with Multivariate and Univariate Analysis

    PubMed Central

    Oinas, J.; Rieppo, L.; Finnilä, M. A. J.; Valkealahti, M.; Lehenkari, P.; Saarakkala, S.

    2016-01-01

    The changes in chemical composition of human articular cartilage (AC) caused by osteoarthritis (OA) were investigated using Fourier transform infrared microspectroscopy (FTIR-MS). We demonstrate the sensitivity of FTIR-MS for monitoring compositional changes that occur with OA progression. Twenty-eight AC samples from tibial plateaus were imaged with FTIR-MS. Hyperspectral images of all samples were combined for K-means clustering. Partial least squares regression (PLSR) analysis was used to compare the spectra with the OARSI grade (histopathological grading of OA). Furthermore, the amide I and the carbohydrate regions were used to estimate collagen and proteoglycan contents, respectively. Spectral peak at 1338 cm−1 was used to estimate the integrity of the collagen network. The layered structure of AC was revealed using the carbohydrate region for clustering. Statistically significant correlation was observed between the OARSI grade and the collagen integrity in the superficial (r = −0.55) and the deep (r = −0.41) zones. Furthermore, PLSR models predicted the OARSI grade from the superficial (r = 0.94) and the deep (r = 0.77) regions of the AC with high accuracy. Obtained results suggest that quantitative and qualitative changes occur in the AC composition during OA progression, and these can be monitored by the use of FTIR-MS. PMID:27445254

  11. A general theory of interference fringes in x-ray phase grating imaging

    SciTech Connect

    Yan, Aimin; Wu, Xizeng E-mail: liu@ou.edu; Liu, Hong E-mail: liu@ou.edu

    2015-06-15

    Purpose: The authors note that the concept of the Talbot self-image distance in x-ray phase grating interferometry is indeed not well defined for polychromatic x-rays, because both the grating phase shift and the fractional Talbot distances are all x-ray wavelength-dependent. For x-ray interferometry optimization, there is a need for a quantitative theory that is able to predict if a good intensity modulation is attainable at a given grating-to-detector distance. In this work, the authors set out to meet this need. Methods: In order to apply Fourier analysis directly to the intensity fringe patterns of two-dimensional and one-dimensional phase grating interferometers, the authors start their derivation from a general phase space theory of x-ray phase-contrast imaging. Unlike previous Fourier analyses, the authors evolved the Wigner distribution to obtain closed-form expressions of the Fourier coefficients of the intensity fringes for any grating-to-detector distance, even if it is not a fractional Talbot distance. Results: The developed theory determines the visibility of any diffraction order as a function of the grating-to-detector distance, the phase shift of the grating, and the x-ray spectrum. The authors demonstrate that the visibilities of diffraction orders can serve as the indicators of the underlying interference intensity modulation. Applying the theory to the conventional and inverse geometry configurations of single-grating interferometers, the authors demonstrated that the proposed theory provides a quantitative tool for the grating interferometer optimization with or without the Talbot-distance constraints. Conclusions: In this work, the authors developed a novel theory of the interference intensity fringes in phase grating x-ray interferometry. This theory provides a quantitative tool in design optimization of phase grating x-ray interferometers.

  12. A general theory of interference fringes in x-ray phase grating imaging

    PubMed Central

    Yan, Aimin; Wu, Xizeng; Liu, Hong

    2015-01-01

    Purpose: The authors note that the concept of the Talbot self-image distance in x-ray phase grating interferometry is indeed not well defined for polychromatic x-rays, because both the grating phase shift and the fractional Talbot distances are all x-ray wavelength-dependent. For x-ray interferometry optimization, there is a need for a quantitative theory that is able to predict if a good intensity modulation is attainable at a given grating-to-detector distance. In this work, the authors set out to meet this need. Methods: In order to apply Fourier analysis directly to the intensity fringe patterns of two-dimensional and one-dimensional phase grating interferometers, the authors start their derivation from a general phase space theory of x-ray phase-contrast imaging. Unlike previous Fourier analyses, the authors evolved the Wigner distribution to obtain closed-form expressions of the Fourier coefficients of the intensity fringes for any grating-to-detector distance, even if it is not a fractional Talbot distance. Results: The developed theory determines the visibility of any diffraction order as a function of the grating-to-detector distance, the phase shift of the grating, and the x-ray spectrum. The authors demonstrate that the visibilities of diffraction orders can serve as the indicators of the underlying interference intensity modulation. Applying the theory to the conventional and inverse geometry configurations of single-grating interferometers, the authors demonstrated that the proposed theory provides a quantitative tool for the grating interferometer optimization with or without the Talbot-distance constraints. Conclusions: In this work, the authors developed a novel theory of the interference intensity fringes in phase grating x-ray interferometry. This theory provides a quantitative tool in design optimization of phase grating x-ray interferometers. PMID:26127056

  13. A tilt-compensated Fourier transform spectrometer with an image rotator

    NASA Astrophysics Data System (ADS)

    Wei, Ruyi; Yin, Bangsheng

    2015-07-01

    Due to the moving plane mirror, tilt compensation is crucial and challenging in designing high precision Michelson-type interferometers. In this paper, we propose an optical configuration design using an image rotator and plane mirrors, including a movable double-sided mirror (DSM) to balance out the tilt of the mirror. We analysed the optical path differences (OPD) caused by the tilt of the DSM and their effects on interferogram under different tilt cases. Analyses demonstrate that this design is able to cancel out the offset of the OPD introduced by the tilt pitch angle. For different incident rays in parallel, the position of the tilt centre has no relationship with the change of the OPD, implying that the OPD could be self-compensated, and the modulation of the interferogram will not be degraded due to the tilt. This configuration effectively relaxes the requirements on the control of the precision of the postures of the moving mirror and thus may have broad applications.

  14. Analysis of the nutritional status of algae by Fourier transform infrared chemical imaging

    NASA Astrophysics Data System (ADS)

    Hirschmugl, Carol J.; Bayarri, Zuheir-El; Bunta, Maria; Holt, Justin B.; Giordano, Mario

    2006-09-01

    A new non-destructive method to study the nutritional status of algal cells and their environments is demonstrated. This approach allows rapid examination of whole cells without any or little pre-treatment providing a large amount of information on the biochemical composition of cells and growth medium. The method is based on the analysis of a collection of infrared (IR) spectra for individual cells; each spectrum describes the biochemical composition of a portion of a cell; a complete set of spectra is used to reconstruct an image of the entire cell. To obtain spatially resolved information synchrotron radiation was used as a bright IR source. We tested this method on the green flagellate Euglena gracilis; a comparison was conducted between cells grown in nutrient replete conditions (Type 1) and on cells allowed to deplete their medium (Type 2). Complete sets of spectra for individual cells of both types were analyzed with agglomerative hierarchical clustering, leading to distinct clusters representative of the two types of cells. The average spectra for the clusters confirmed the similarities between the clusters and the types of cells. The clustering analysis, therefore, allows the distinction of cells of the same species, but with different nutritional histories. In order to facilitate the application of the method and reduce manipulation (washing), we analyzed the cells in the presence of residual medium. The results obtained showed that even with residual medium the outcome of the clustering analysis is reliable. Our results demonstrate the applicability FTIR microspectroscopy for ecological and ecophysiological studies.

  15. The Fourier Imaging X-ray Spectrometer (FIXS) for the Argentinian, Scout-launched satelite de Aplicaciones Cienficas-1 (SAC-1)

    NASA Technical Reports Server (NTRS)

    Dennis, Brian R.; Crannell, Carol JO; Desai, Upendra D.; Orwig, Larry E.; Kiplinger, Alan L.; Schwartz, Richard A.; Hurford, Gordon J.; Emslie, A. Gordon; Machado, Marcos; Wood, Kent

    1988-01-01

    The Fourier Imaging X-ray Spectrometer (FIXS) is one of four instruments on SAC-1, the Argentinian satellite being proposed for launch by NASA on a Scout rocket in 1992/3. The FIXS is designed to provide solar flare images at X-ray energies between 5 and 35 keV. Observations will be made on arcsecond size scales and subsecond time scales of the processes that modify the electron spectrum and the thermal distribution in flaring magnetic structures.

  16. Quantitative phase imaging with programmable illumination

    NASA Astrophysics Data System (ADS)

    Kim, Taewoo; Edwards, Chris; Goddard, Lynford L.; Popescu, Gabriel

    2015-03-01

    Even with the recent rapid advances in the field of microscopy, non-laser light sources used for light microscopy have not been developing significantly. Most current optical microscopy systems use halogen bulbs as their light sources to provide a white-light illumination. Due to the confined shapes and finite filament size of the bulbs, little room is available for modification in the light source, which prevents further advances in microscopy. By contrast, commercial projectors provide a high power output that is comparable to the halogen lamps while allowing for great flexibility in patterning the illumination. In addition to their high brightness, the illumination can be patterned to have arbitrary spatial and spectral distributions. Therefore, commercial projectors can be adopted as a flexible light source to an optical microscope by careful alignment to the existing optical path. In this study, we employed a commercial projector source to a quantitative phase imaging system called spatial light interference microscopy (SLIM), which is an outside module for an existing phase contrast (PC) microscope. By replacing the ring illumination of PC with a ring-shaped pattern projected onto the condenser plane, we were able to recover the same result as the original SLIM. Furthermore, the ring illumination is replaced with multiple dots aligned along the same ring to minimize the overlap between the scattered and unscattered fields. This new method minimizes the halo artifact of the imaging system, which allows for a halo-free high-resolution quantitative phase microscopy system.

  17. Matrix-free mass spectrometric imaging using laser desorption ionisation Fourier transform ion cyclotron resonance mass spectrometry.

    PubMed

    Goodwin, Richard J A; Pitt, Andrew R; Harrison, David; Weidt, Stefan K; Langridge-Smith, Pat R R; Barrett, Michael P; Logan Mackay, C

    2011-04-15

    Mass spectrometry imaging (MSI) is a powerful tool in metabolomics and proteomics for the spatial localization and identification of pharmaceuticals, metabolites, lipids, peptides and proteins in biological tissues. However, sample preparation remains a crucial variable in obtaining the most accurate distributions. Common washing steps used to remove salts, and solvent-based matrix application, allow analyte spreading to occur. Solvent-free matrix applications can reduce this risk, but increase the possibility of ionisation bias due to matrix adhesion to tissue sections. We report here the use of matrix-free MSI using laser desorption ionisation performed on a 12 T Fourier transform ion cyclotron resonance (FTICR) mass spectrometer. We used unprocessed tissue with no post-processing following thaw-mounting on matrix-assisted laser desorption ionisation (MALDI) indium-tin oxide (ITO) target plates. The identification and distribution of a range of phospholipids in mouse brain and kidney sections are presented and compared with previously published MALDI time-of-flight (TOF) MSI distributions. PMID:21416534

  18. Automation and Control of an Imaging Internal Laser Desorption Fourier Transform Mass Spectrometer (I2LD-FTMS)

    SciTech Connect

    McJunkin, Timothy R; Tranter, Troy Joseph; Scott, Jill Rennee

    2002-06-01

    This paper describes the automation of an imaging internal source laser desorption Fourier transform mass spectrometer (I2LD-FTMS). The I2LD-FTMS consists of a laser-scanning device [Scott and Tremblay, Rev. Sci. Instrum. 2002, 73, 1108–1116] that has been integrated with a laboratory-built FTMS using a commercial data acquisition system (ThermoFinnigan FT/MS, Bremen, Germany). A new user interface has been developed in National Instrument's (Austin, Texas) graphical programming language LabVIEW to control the motors of the laser positioning system and the commercial FTMS data acquisition system. A feature of the FTMS software that allows the user to write macros in a scripting language is used creatively to our advantage in creating a mechanism to control the FTMS from outside its graphical user interface. The new user interface also allows the user to configure target locations. Automation of the data analysis along with data display using commercial graphing software is also described.

  19. Multiple template-based image matching using alpha-rooted quaternion phase correlation

    NASA Astrophysics Data System (ADS)

    DelMarco, Stephen

    2010-04-01

    In computer vision applications, image matching performed on quality-degraded imagery is difficult due to image content distortion and noise effects. State-of-the art keypoint based matchers, such as SURF and SIFT, work very well on clean imagery. However, performance can degrade significantly in the presence of high noise and clutter levels. Noise and clutter cause the formation of false features which can degrade recognition performance. To address this problem, previously we developed an extension to the classical amplitude and phase correlation forms, which provides improved robustness and tolerance to image geometric misalignments and noise. This extension, called Alpha-Rooted Phase Correlation (ARPC), combines Fourier domain-based alpha-rooting enhancement with classical phase correlation. ARPC provides tunable parameters to control the alpha-rooting enhancement. These parameter values can be optimized to tradeoff between high narrow correlation peaks, and more robust wider, but smaller peaks. Previously, we applied ARPC in the radon transform domain for logo image recognition in the presence of rotational image misalignments. In this paper, we extend ARPC to incorporate quaternion Fourier transforms, thereby creating Alpha-Rooted Quaternion Phase Correlation (ARQPC). We apply ARQPC to the logo image recognition problem. We use ARQPC to perform multiple-reference logo template matching by representing multiple same-class reference templates as quaternion-valued images. We generate recognition performance results on publicly-available logo imagery, and compare recognition results to results generated from standard approaches. We show that small deviations in reference templates of sameclass logos can lead to improved recognition performance using the joint matching inherent in ARQPC.

  20. Measurement of retinal blood flow in the rat by combining Doppler Fourier-domain optical coherence tomography with fundus imaging

    NASA Astrophysics Data System (ADS)

    Werkmeister, René M.; Vietauer, Martin; Knopf, Corinna; Fürnsinn, Clemens; Leitgeb, Rainer A.; Reitsamer, Herbert; Gröschl, Martin; Garhöfer, Gerhard; Vilser, Walthard; Schmetterer, Leopold

    2014-10-01

    A wide variety of ocular diseases are associated with abnormalities in ocular circulation. As such, there is considerable interest in techniques for quantifying retinal blood flow, among which Doppler optical coherence tomography (OCT) may be the most promising. We present an approach to measure retinal blood flow in the rat using a new optical system that combines the measurement of blood flow velocities via Doppler Fourier-domain optical coherence tomography and the measurement of vessel diameters using a fundus camera-based technique. Relying on fundus images for extraction of retinal vessel diameters instead of OCT images improves the reliability of the technique. The system was operated with an 841-nm superluminescent diode and a charge-coupled device camera that could be operated at a line rate of 20 kHz. We show that the system is capable of quantifying the response of 100% oxygen breathing on the retinal blood flow. In six rats, we observed a decrease in retinal vessel diameters of 13.2% and a decrease in retinal blood velocity of 42.6%, leading to a decrease in retinal blood flow of 56.7%. Furthermore, in four rats, the response of retinal blood flow during stimulation with diffuse flicker light was assessed. Retinal vessel diameter and blood velocity increased by 3.4% and 28.1%, respectively, leading to a relative increase in blood flow of 36.2%;. The presented technique shows much promise to quantify early changes in retinal blood flow during provocation with various stimuli in rodent models of ocular diseases in rats.

  1. Radiometric Modeling and Calibration of the Geostationary Imaging Fourier Transform Spectrometer (GIFTS)Ground Based Measurement Experiment

    NASA Technical Reports Server (NTRS)

    Tian, Jialin; Smith, William L.; Gazarik, Michael J.

    2008-01-01

    The ultimate remote sensing benefits of the high resolution Infrared radiance spectrometers will be realized with their geostationary satellite implementation in the form of imaging spectrometers. This will enable dynamic features of the atmosphere s thermodynamic fields and pollutant and greenhouse gas constituents to be observed for revolutionary improvements in weather forecasts and more accurate air quality and climate predictions. As an important step toward realizing this application objective, the Geostationary Imaging Fourier Transform Spectrometer (GIFTS) Engineering Demonstration Unit (EDU) was successfully developed under the NASA New Millennium Program, 2000-2006. The GIFTS-EDU instrument employs three focal plane arrays (FPAs), which gather measurements across the long-wave IR (LWIR), short/mid-wave IR (SMWIR), and visible spectral bands. The GIFTS calibration is achieved using internal blackbody calibration references at ambient (260 K) and hot (286 K) temperatures. In this paper, we introduce a refined calibration technique that utilizes Principle Component (PC) analysis to compensate for instrument distortions and artifacts, therefore, enhancing the absolute calibration accuracy. This method is applied to data collected during the GIFTS Ground Based Measurement (GBM) experiment, together with simultaneous observations by the accurately calibrated AERI (Atmospheric Emitted Radiance Interferometer), both simultaneously zenith viewing the sky through the same external scene mirror at ten-minute intervals throughout a cloudless day at Logan Utah on September 13, 2006. The accurately calibrated GIFTS radiances are produced using the first four PC scores in the GIFTS-AERI regression model. Temperature and moisture profiles retrieved from the PC-calibrated GIFTS radiances are verified against radiosonde measurements collected throughout the GIFTS sky measurement period. Using the GIFTS GBM calibration model, we compute the calibrated radiances from data

  2. Measurement of retinal blood flow in the rat by combining Doppler Fourier-domain optical coherence tomography with fundus imaging.

    PubMed

    Werkmeister, René M; Vietauer, Martin; Knopf, Corinna; Fürnsinn, Clemens; Leitgeb, Rainer A; Reitsamer, Herbert; Gröschl, Martin; Garhöfer, Gerhard; Vilser, Walthard; Schmetterer, Leopold

    2014-01-01

    A wide variety of ocular diseases are associated with abnormalities in ocular circulation. As such, there is considerable interest in techniques for quantifying retinal blood flow, among which Doppler optical coherence tomography (OCT) may be the most promising. We present an approach to measure retinal blood flow in the rat using a new optical system that combines the measurement of blood flow velocities via Doppler Fourier-domain optical coherence tomography and the measurement of vessel diameters using a fundus camera-based technique. Relying on fundus images for extraction of retinal vessel diameters instead of OCT images improves the reliability of the technique. The system was operated with an 841-nm superluminescent diode and a charge-coupled device camera that could be operated at a line rate of 20 kHz. We show that the system is capable of quantifying the response of 100% oxygen breathing on the retinal blood flow. In six rats, we observed a decrease in retinal vessel diameters of 13.2% and a decrease in retinal blood velocity of 42.6%, leading to a decrease in retinal blood flow of 56.7%. Furthermore, in four rats, the response of retinal blood flow during stimulation with diffuse flicker light was assessed. Retinal vessel diameter and blood velocity increased by 3.4% and 28.1%, respectively, leading to a relative increase in blood flow of 36.2%. The presented technique shows much promise to quantify early changes in retinal blood flow during provocation with various stimuli in rodent models of ocular diseases in rats. PMID:25321400

  3. Phase error suppression by low-pass filtering for synthetic aperture imaging ladar

    NASA Astrophysics Data System (ADS)

    Sun, Zhiwei; Hou, Peipei; Zhi, Ya'nan; Sun, Jianfeng; Zhou, Yu; Xu, Qian; Lu, Zhiyong; Liu, Liren

    2014-09-01

    Compared to synthetic aperture radar (SAR), synthetic aperture imaging ladar (SAIL) is more sensitive to the phase errors induced by atmospheric turbulence, undesirable line-of-sight translation-vibration and waveform phase error, because the light wavelength is about 3-6 orders of magnitude less than that of the radio frequency. This phase errors will deteriorate the imaging results. In this paper, an algorithm based on low-pass filtering to suppress the phase error is proposed. In this algorithm, the azimuth quadratic phase history with phase error is compensated, then the fast Fourier transform (FFT) is performed in azimuth direction, after the low-pass filtering, the inverse FFT is performed, then the image is reconstructed simultaneously in the range and azimuth direction by the two-dimensional (2D) FFT. The highfrequency phase error can be effectively eliminated hence the imaging results can be optimized by this algorithm. The mathematical analysis by virtue of data-collection equation of side-looking SAIL is presented. The theoretical modeling results are also given. In addition, based on this algorithm, a principle scheme of optical processor is proposed. The verified experiment is performed employing the data obtained from a SAIL demonstrator.

  4. High resolution imaging Fourier transform spectrometer with no moving components for the measurement of atmospheric trace gases

    NASA Astrophysics Data System (ADS)

    Mortimer, H.

    2014-12-01

    A high resolution Static Imaging Fourier Transform Spectrometer, SIFTS, with no moving parts has been developed for the detection of atmospheric gases. The instrument has been shown to have high spectral resolution (4 cm-1) and temporal resolution (10kHz) resolution in both the mid and near infrared and moderate spectral resolution (14cm-1) in the visible. This instrument has been developed for the remote sensing and in-situ measurements of atmospheric gases. It has been identified that due to the low mass and compact size of the instrument system, that the SIFTS could be deployed as a remote sensing instrument onboard a Earth Observation satellite or Unmanned Aerial Vehicle (UAV), or conversely as a radiosonde instrument for in-situ measurements of atmospheric gases. The technique is based on a static optical configuration whereby light is split into two paths and made to recombine along a focal plane producing an interference pattern. The spectral information is returned using a detector array to digitally capture the interferogram which can then be processed into a spectrum by applying a Fourier transform. As there are no moving components, the speed of measurement is determined by the frame rate of the detector array. Thus, this instrument has a temporal advantage over common Michelson FTIR instruments. Using a high speed Toshiba CCD line array, sensitive over the spectral region of 400 - 1100nm, spectra have been recorded at a rate of one every 100 microseconds. Using an uncooled microbolometer infrared detector array, sensitive over the spectral region of 2 to 15μm, the gases NH3, O3 and CH4 have been used to demonstrate the sensitivity of the SIFTS instrument. It has been shown that the Signal to Noise of the SIFTSMIR is >1200 using an integration time of 77msec. The novel optical design has reduced the optics to only 3 optical components, and the detector array, to generate and measure the interferogram. The experimental performance of the SIFTS instrument

  5. Fast numerical autofocus of multispectral complex fields in digital holographic microscopy with a criterion based on the phase in the Fourier domain.

    PubMed

    Dohet-Eraly, Jérôme; Yourassowsky, Catherine; Dubois, Frank

    2016-09-01

    The knowledge of the complex amplitude of optical fields, that is, both quantitative phase and intensity, enables numeric reconstruction along the optical axis. Nonetheless, a criterion is required for autofocusing. This Letter presents a robust and rapid refocusing criterion suitable for color interferometric digital holographic microscopy, and, more generally, for applications where complex amplitude is known for at least two different wavelengths. This criterion uses the phase in the Fourier domain, which is compared among wavelengths. It is applicable whatever the nature of the observed object: opaque, refractive, or both mixed. The method is validated with simulated and experimental holograms. PMID:27607975

  6. Color image encryption based on color blend and chaos permutation in the reality-preserving multiple-parameter fractional Fourier transform domain

    NASA Astrophysics Data System (ADS)

    Lang, Jun

    2015-03-01

    In this paper, we propose a novel color image encryption method by using Color Blend (CB) and Chaos Permutation (CP) operations in the reality-preserving multiple-parameter fractional Fourier transform (RPMPFRFT) domain. The original color image is first exchanged and mixed randomly from the standard red-green-blue (RGB) color space to R‧G‧B‧ color space by rotating the color cube with a random angle matrix. Then RPMPFRFT is employed for changing the pixel values of color image, three components of the scrambled RGB color space are converted by RPMPFRFT with three different transform pairs, respectively. Comparing to the complex output transform, the RPMPFRFT transform ensures that the output is real which can save storage space of image and convenient for transmission in practical applications. To further enhance the security of the encryption system, the output of the former steps is scrambled by juxtaposition of sections of the image in the reality-preserving multiple-parameter fractional Fourier domains and the alignment of sections is determined by two coupled chaotic logistic maps. The parameters in the Color Blend, Chaos Permutation and the RPMPFRFT transform are regarded as the key in the encryption algorithm. The proposed color image encryption can also be applied to encrypt three gray images by transforming the gray images into three RGB color components of a specially constructed color image. Numerical simulations are performed to demonstrate that the proposed algorithm is feasible, secure, sensitive to keys and robust to noise attack and data loss.

  7. Optical image encryption using password key based on phase retrieval algorithm

    NASA Astrophysics Data System (ADS)

    Zhao, Tieyu; Ran, Qiwen; Yuan, Lin; Chi, Yingying; Ma, Jing

    2016-04-01

    A novel optical image encryption system is proposed using password key based on phase retrieval algorithm (PRA). In the encryption process, a shared image is taken as a symmetric key and the plaintext is encoded into the phase-only mask based on the iterative PRA. The linear relationship between the plaintext and ciphertext is broken using the password key, which can resist the known plaintext attack. The symmetric key and the retrieved phase are imported into the input plane and Fourier plane of 4f system during the decryption, respectively, so as to obtain the plaintext on the CCD. Finally, we analyse the key space of the password key, and the results show that the proposed scheme can resist a brute force attack due to the flexibility of the password key.

  8. Phase correlation imaging of unlabeled cell dynamics.

    PubMed

    Ma, Lihong; Rajshekhar, Gannavarpu; Wang, Ru; Bhaduri, Basanta; Sridharan, Shamira; Mir, Mustafa; Chakraborty, Arindam; Iyer, Rajashekar; Prasanth, Supriya; Millet, Larry; Gillette, Martha U; Popescu, Gabriel

    2016-01-01

    We present phase correlation imaging (PCI) as a novel approach to study cell dynamics in a spatially-resolved manner. PCI relies on quantitative phase imaging time-lapse data and, as such, functions in label-free mode, without the limitations associated with exogenous markers. The correlation time map outputted in PCI informs on the dynamics of the intracellular mass transport. Specifically, we show that PCI can extract quantitatively the diffusion coefficient map associated with live cells, as well as standard Brownian particles. Due to its high sensitivity to mass transport, PCI can be applied to studying the integrity of actin polymerization dynamics. Our results indicate that the cyto-D treatment blocking the actin polymerization has a dominant effect at the large spatial scales, in the region surrounding the cell. We found that PCI can distinguish between senescent and quiescent cells, which is extremely difficult without using specific markers currently. We anticipate that PCI will be used alongside established, fluorescence-based techniques to enable valuable new studies of cell function. PMID:27615512

  9. TIRCIS: Hyperspectral Thermal Infrared Imaging Using a Small-Satellite Compliant Fourier-Transform Imaging Spectrometer, for Natural Hazard Applications

    NASA Astrophysics Data System (ADS)

    Wright, R.; Lucey, P. G.; Crites, S.; Garbeil, H.; Wood, M.

    2015-12-01

    Many natural hazards, including wildfires, volcanic eruptions, and, from the perspective of climate-related hazards, urban heat islands, could be better quantified via the routine availability of hyperspectral thermal infrared remote sensing data from orbit. However, no sensors are currently in operation that provide such data at high-to-moderate spatial resolution (e.g. Landsat-class resolution). In this presentation we will describe a prototype instrument, developed using funding provided by NASA's Instrument Incubator Program, that can make these important measurements. Significantly, the instrument has been designed such that its size, mass, power, and cost are consistent with its integration into small satellite platforms, or deployment as part of small satellite constellations. The instrument, TIRCIS (Thermal Infra-Red Compact Imaging Spectrometer), uses a Fabry-Perot interferometer, an uncooled microbolometer array, and push-broom scanning to acquire hyperspectral image data cubes. Radiometric calibration is provided by blackbody targets while spectral calibration is achieved using monochromatic light sources. Neither the focal plane nor the optics need to be cooled, and the instrument has a mass of <10 kg and dimensions of 53 cm × 25 cm × 22 cm. Although the prototype has four moving parts, this can easily be reduced to one. The current optical design yields a 120 m ground sample size given an orbit of 500 km. Over the wavelength interval of 7.5 to 14 microns up to 90 spectral samples are possible, by varying the physical design of the interferometer. Our performance model indicates signal-to-noise ratios of the order of about 200 to 300:1. In this presentation we will provide an overview of the instrument design, fabrication, results from our initial laboratory characterization, and some of the application areas in which small-satellite-ready instruments such as TIRCIS could make a valuable contribution to the study of natural hazards.

  10. Multicontrast x-ray computed tomography imaging using Talbot-Lau interferometry without phase stepping

    SciTech Connect

    Bevins, Nicholas; Zambelli, Joseph; Li Ke; Qi Zhihua; Chen Guanghong

    2012-01-15

    Purpose: The purpose of this work is to demonstrate that multicontrast computed tomography (CT) imaging can be performed using a Talbot-Lau interferometer without phase stepping, thus allowing for an acquisition scheme like that used for standard absorption CT. Methods: Rather than using phase stepping to extract refraction, small-angle scattering (SAS), and absorption signals, the two gratings of a Talbot-Lau interferometer were rotated slightly to generate a moire pattern on the detector. A Fourier analysis of the moire pattern was performed to obtain separate projection images of each of the three contrast signals, all from the same single-shot of x-ray exposure. After the signals were extracted from the detector data for all view angles, image reconstruction was performed to obtain absorption, refraction, and SAS CT images. A physical phantom was scanned to validate the proposed data acquisition method. The results were compared with a phantom scan using the standard phase stepping approach. Results: The reconstruction of each contrast mechanism produced the expected results. Signal levels and contrasts match those obtained using the phase stepping technique. Conclusions: Absorption, refraction, and SAS CT imaging can be achieved using the Talbot-Lau interferometer without the additional overhead of long scan time and phase stepping.

  11. Heralded phase-contrast imaging using an orbital angular momentum phase-filter

    NASA Astrophysics Data System (ADS)

    Aspden, Reuben S.; Morris, Peter A.; He, Ruiqing; Chen, Qian; Padgett, Miles J.

    2016-05-01

    We utilise the position and orbital angular momentum (OAM) correlations between the signal and idler photons generated in the down-conversion process to obtain ghost images of a phase object. By using an OAM phase filter, which is non-local with respect to the object, the images exhibit isotropic edge-enhancement. This imaging technique is the first demonstration of a full-field, phase-contrast imaging system with non-local edge enhancement, and enables imaging of phase objects using significantly fewer photons than standard phase-contrast imaging techniques.

  12. Experimental modules covering imaging, diffraction, Fourier optics and polarization based on a liquid-crystal cell SLM

    NASA Astrophysics Data System (ADS)

    Hermerschmidt, Andreas

    2009-06-01

    In close collaboration with four German universities, we have developed tutorials for experiments based on a transmissive liquid-crystal spatial light modulator (SLM). The experimental tutorials are grouped in six project modules, which cover a wide range of phenomena and have different levels of difficulty. At a basic level, students can investigate the SLM in its probably most well-known application as an image-generating element in a simple optical projector setup. At more advanced levels, the application as an adaptive optical element can be investigated in three different projects covering wave-optical phenomena. The fields covered include Fourier Optics using the SLM as a dynamic fan-out beam-splitter or kinoform, Computer-Generated Holography and basic Interferometry. For the support of these projects, software was developed which permits the generation of adaptive optical structures by the student with a user-friendly interface, while the underlying algorithms are explained in the theoretical tutorial. The modulation of the light by the twisted-neumatic liquid crystal cells of the SLM can be investigated in the two most advanced projects. In the first one, the parameters of the cell and the components of its Jones matrix can be derived from transmission measurements with rotatable polarizers at a number of different wavelengths. This project gives insight to the Jones matrix calculus at the level required for the analysis. In the second one, the complex-valued transmission of the SLM is determined by measuring the diffraction efficiency of dynamically addressed Ronchi gratings.

  13. A simple public-key attack on phase-truncation-based double-images encryption system

    NASA Astrophysics Data System (ADS)

    Ding, Xiangling; Yang, Gaobo; He, Dajiang

    2015-07-01

    Phase-truncation based double-images cryptosystem can avoid the iterative Fourier transforms and realize double-images encryption. In this paper, a simple public-key attack is proposed to break this cryptosystem by using arbitrary position parameters and three public keys. The attack process is composed of two steps. Firstly, the decryption keys are simply generated with the help of arbitrary position parameters and the three public keys. Secondly, the two approximate values of the original images are obtained by using the generated decryption keys. Moreover, the proposed public-key attack is different from the existing attacks. It is not sensitive to position parameters of the double-images and the computing efficiency is also much better. Computer simulation results further prove its vulnerability.

  14. Encrypted imaging based on algebraic implementation of double random phase encoding.

    PubMed

    Nakano, Kazuya; Takeda, Masafumi; Suzuki, Hiroyuki; Yamaguchi, Masahiro

    2014-05-10

    The security of important information captured by sensors and cameras is currently a growing concern as information theft via techniques such as side-channel attacks become increasingly more prevalent. Double random phase encoding (DRPE) is an optical encryption method based on optical Fourier transform that is currently being used to implement secure coherent optical systems. In this paper, we propose a new DRPE implementation for incoherent optical systems based on integral photography that can be applied to "encrypted imaging (EI)" to optically encrypt an image before it is captured by an image sensor. Because the proposed incoherent DRPE is constituted from conventional DRPE by rewriting the optical encryption via discretization and Euler's formula, its security level is the same as that of conventional DRPE. The results of an experiment in which we encrypted a plaintext image optically and then decrypted it numerically demonstrate that our proposed incoherent optical security system is feasible. PMID:24922013

  15. Chemical morphology of Areca nut characterized directly by Fourier transform near-infrared and mid-infrared microspectroscopic imaging in reflection modes.

    PubMed

    Chen, Jian-Bo; Sun, Su-Qin; Zhou, Qun

    2016-12-01

    Fourier transform near-infrared (NIR) and mid-infrared (MIR) imaging techniques are essential tools to characterize the chemical morphology of plant. The transmission imaging mode is mostly used to obtain easy-to-interpret spectra with high signal-to-noise ratio. However, the native chemical compositions and physical structures of plant samples may be altered when they are microtomed for the transmission tests. For the direct characterization of thick plant samples, the combination of the reflection NIR imaging and the attenuated total reflection (ATR) MIR imaging is proposed in this research. First, the reflection NIR imaging method can explore the whole sample quickly to find out typical regions in small sizes. Next, each small typical region can be measured by the ATR-MIR imaging method to reveal the molecular structures and spatial distributions of compounds of interest. As an example, the chemical morphology of Areca nut section is characterized directly by the above approach. PMID:27374557

  16. Built-in hyperspectral camera for smartphone in visible, near-infrared and middle-infrared lights region (first report): trial products of beans-size Fourier-spectroscopic line-imager and feasibility experimental results of middle-infrared spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Ishimaru, Ichiro; Kawashima, Natsumi; Hosono, Satsuki

    2016-05-01

    We had already proposed and reported the little-finger size hyperspectral-camera that was able to be applied to visible and infrared lights. The proposed method has been expected to be mounted on smartphones for healthcare sensors, and unmanned air vehicles such as drones for antiterrorism measures or environmental measurements. In this report, we will mention the trial product of the thumb size apparatus whose lens diameter was 5[mm]. The proposed Fourier spectroscopic imager is a kind of wavefront-division and common-path phase-shift interferometers. We installed the relative inclined phase-shifter onto optical Fourier transform plane of infinity corrected optical systems. The infinity corrected optical systems was configured with an objective lens and a cylindrical imaging lens. The relative inclined phase-shifter, what was made from a thin glass less than 0.3[mm] thick, had the wedge-prism and cuboid-glass region, because half surface of a thin glass was polished at an oblique angle of around 1[deg.]. The collimated half flux of objective beams derived from single-bright points on objective surface penetrate through the wedge prism and the cuboid glass respectively. These two beams are interfered each other and form the infererogram as spatial fringe patterns. In this case, the horizontal axis on 2-dimensional light receiving device is assigned to the amount of phase-shift. And also the vertical axis is assigned to the imaging coordinates on a line view field. Thus, by installing thin phase-shifter onto optical Fourier transform plane, the line spectroscopic imager, what obtains 1 dimensional spectral character distributions, were able to be realized.

  17. Micro- and macro-attenuated total reflection Fourier transform infrared spectroscopic imaging. Plenary Lecture at the 5th International Conference on Advanced Vibrational Spectroscopy, 2009, Melbourne, Australia.

    PubMed

    Kazarian, Sergei G; Chan, K L Andrew

    2010-05-01

    Fourier transform infrared (FT-IR) spectroscopic imaging has become a very powerful method in chemical analysis. In this review paper we describe a variety of opportunities for obtaining FT-IR images using the attenuated total reflection (ATR) approach and provide an overview of fundamental aspects, accessories, and applications in both micro- and macro-ATR imaging modes. The advantages and versatility of both ATR imaging modes are discussed and the spatial resolution of micro-ATR imaging is demonstrated. Micro-ATR imaging has opened up many new areas of study that were previously precluded by inadequate spatial resolution (polymer blends, pharmaceutical tablets, cross-sections of blood vessels or hair, surface of skin, single live cells, cancerous tissues). Recent applications of ATR imaging in polymer research, biomedical and forensic sciences, objects of cultural heritage, and other complex materials are outlined. The latest advances include obtaining spatially resolved chemical images from different depths within a sample, and surface-enhanced images for macro-ATR imaging have also been presented. Macro-ATR imaging is a valuable approach for high-throughput analysis of materials under controlled environments. Opportunities exist for chemical imaging of dynamic aqueous systems, such as dissolution, diffusion, microfluidics, or imaging of dynamic processes in live cells. PMID:20482963

  18. Two-dimensional wave-number spectral analysis techniques for phase contrast imaging turbulence imaging data on large helical device.

    PubMed

    Michael, C A; Tanaka, K; Vyacheslavov, L; Sanin, A; Kawahata, K

    2015-09-01

    An analysis method for unfolding the spatially resolved wave-number spectrum and phase velocity from the 2D CO2 laser phase contrast imaging system on the large helical device is described. This is based on the magnetic shear technique which identifies propagation direction from 2D spatial Fourier analysis of images detected by a 6 × 8 detector array. Because the strongest modes have wave-number at the lower end of the instrumental k range, high resolution spectral techniques are necessary to clearly resolve the propagation direction and hence the spatial distribution of fluctuations along the probing laser beam. Multiple-spatial point cross-correlation averaging is applied before calculating the spatial power spectrum. Different methods are compared, and it is found that the maximum entropy method (MEM) gives best results. The possible generation of artifacts from the over-narrowing of spectra are investigated and found not to be a significant problem. The spatial resolution Δρ (normalized radius) around the peak wave-number, for conventional Fourier analysis, is ∼0.5, making physical interpretation difficult, while for MEM, Δρ ∼ 0.1. PMID:26429439

  19. Two-dimensional wave-number spectral analysis techniques for phase contrast imaging turbulence imaging data on large helical device

    SciTech Connect

    Michael, C. A.; Tanaka, K.; Kawahata, K.; Vyacheslavov, L.; Sanin, A.

    2015-09-15

    An analysis method for unfolding the spatially resolved wave-number spectrum and phase velocity from the 2D CO{sub 2} laser phase contrast imaging system on the large helical device is described. This is based on the magnetic shear technique which identifies propagation direction from 2D spatial Fourier analysis of images detected by a 6 × 8 detector array. Because the strongest modes have wave-number at the lower end of the instrumental k range, high resolution spectral techniques are necessary to clearly resolve the propagation direction and hence the spatial distribution of fluctuations along the probing laser beam. Multiple-spatial point cross-correlation averaging is applied before calculating the spatial power spectrum. Different methods are compared, and it is found that the maximum entropy method (MEM) gives best results. The possible generation of artifacts from the over-narrowing of spectra are investigated and found not to be a significant problem. The spatial resolution Δρ (normalized radius) around the peak wave-number, for conventional Fourier analysis, is ∼0.5, making physical interpretation difficult, while for MEM, Δρ ∼ 0.1.

  20. Comparison of retinal thickness by Fourier-domain optical coherence tomography and OCT retinal image analysis software segmentation analysis derived from Stratus optical coherence tomography images

    NASA Astrophysics Data System (ADS)

    Tátrai, Erika; Ranganathan, Sudarshan; Ferencz, Mária; Debuc, Delia Cabrera; Somfai, Gábor Márk

    2011-05-01

    Purpose: To compare thickness measurements between Fourier-domain optical coherence tomography (FD-OCT) and time-domain OCT images analyzed with a custom-built OCT retinal image analysis software (OCTRIMA). Methods: Macular mapping (MM) by StratusOCT and MM5 and MM6 scanning protocols by an RTVue-100 FD-OCT device are performed on 11 subjects with no retinal pathology. Retinal thickness (RT) and the thickness of the ganglion cell complex (GCC) obtained with the MM6 protocol are compared for each early treatment diabetic retinopathy study (ETDRS)-like region with corresponding results obtained with OCTRIMA. RT results are compared by analysis of variance with Dunnett post hoc test, while GCC results are compared by paired t-test. Results: A high correlation is obtained for the RT between OCTRIMA and MM5 and MM6 protocols. In all regions, the StratusOCT provide the lowest RT values (mean difference 43 +/- 8 μm compared to OCTRIMA, and 42 +/- 14 μm compared to RTVue MM6). All RTVue GCC measurements were significantly thicker (mean difference between 6 and 12 μm) than the GCC measurements of OCTRIMA. Conclusion: High correspondence of RT measurements is obtained not only for RT but also for the segmentation of intraretinal layers between FD-OCT and StratusOCT-derived OCTRIMA analysis. However, a correction factor is required to compensate for OCT-specific differences to make measurements more comparable to any available OCT device.

  1. Fourier Ellipsometry -- An Ellipsometric Approach to Fourier Scatterometry

    NASA Astrophysics Data System (ADS)

    Petrik, P.; Kumar, N.; Fried, M.; Fodor, B.; Juhasz, G.; Pereira, S. F.; Burger, S.; Urbach, H. P.

    2015-01-01

    An extension of Fourier scatterometry is presented, aiming at increasing the sensitivity by measuring the phase difference between the reflections polarized parallel and perpendicular to the plane of incidence. The ellipsometric approach requires no additional hardware elements compared with conventional Fourier scatterometry. Furthermore, incoherent illumination is also sufficient, which enables spectroscopy using standard low-cost light sources.

  2. Phase contrast image guidance for synchrotron microbeam radiotherapy

    NASA Astrophysics Data System (ADS)

    Pelliccia, Daniele; Crosbie, Jeffrey C.; Larkin, Kieran G.

    2016-08-01

    Recent image guidance developments for preclinical synchrotron microbeam radiotherapy represent a necessary step for future clinical translation of the technique. Image quality can be further improved using x-ray phase contrast, which is readily available at synchrotron facilities. We here describe a methodology for phase contrast image guidance at the Imaging and Medical Beamline at the Australian Synchrotron. Differential phase contrast is measured alongside conventional attenuation and used to improve the image quality. Post-processing based on the inverse Riesz transform is employed on the measured data to obtain noticeably sharper images. The procedure is extremely well suited for applications such as image guidance which require both visual assessment and sample alignment based on semi automatic image registration. Moreover, our approach can be combined with all other differential phase contrast imaging techniques, in all cases where a quantitative evaluation of the refractive index is not required.

  3. Phase contrast image guidance for synchrotron microbeam radiotherapy.

    PubMed

    Pelliccia, Daniele; Crosbie, Jeffrey C; Larkin, Kieran G

    2016-08-21

    Recent image guidance developments for preclinical synchrotron microbeam radiotherapy represent a necessary step for future clinical translation of the technique. Image quality can be further improved using x-ray phase contrast, which is readily available at synchrotron facilities. We here describe a methodology for phase contrast image guidance at the Imaging and Medical Beamline at the Australian Synchrotron. Differential phase contrast is measured alongside conventional attenuation and used to improve the image quality. Post-processing based on the inverse Riesz transform is employed on the measured data to obtain noticeably sharper images. The procedure is extremely well suited for applications such as image guidance which require both visual assessment and sample alignment based on semi automatic image registration. Moreover, our approach can be combined with all other differential phase contrast imaging techniques, in all cases where a quantitative evaluation of the refractive index is not required. PMID:27436750

  4. Structured illumination quantitative phase microscopy for enhanced resolution amplitude and phase imaging

    PubMed Central

    Chowdhury, Shwetadwip; Izatt, Joseph

    2013-01-01

    Structured illumination microscopy (SIM) is an established microscopy technique typically used to image samples at resolutions beyond the diffraction limit. Until now, however, achieving sub-diffraction resolution has predominantly been limited to intensity-based imaging modalities. Here, we introduce an analogue to conventional SIM that allows sub-diffraction resolution, quantitative phase-contrast imaging of optically transparent objects. We demonstrate sub-diffraction resolution amplitude and quantitative-phase imaging of phantom targets and enhanced resolution quantitative-phase imaging of cells. We report a phase accuracy to within 5% and phase noise of 0.06 rad. PMID:24156044

  5. Quantitative characterization of chitosan in the skin by Fourier-transform infrared spectroscopic imaging and ninhydrin assay: application in transdermal sciences.

    PubMed

    Nawaz, A; Wong, T W

    2016-07-01

    The chitosan has been used as the primary excipient in transdermal particulate dosage form design. Its distribution pattern across the epidermis and dermis is not easily accessible through chemical assay and limited to radiolabelled molecules via quantitative autoradiography. This study explored Fourier-transform infrared spectroscopy imaging technique with built-in microscope as the means to examine chitosan molecular distribution over epidermis and dermis with the aid of histology operation. Fourier-transform infrared spectroscopy skin imaging was conducted using chitosan of varying molecular weights, deacetylation degrees, particle sizes and zeta potentials, obtained via microwave ligation of polymer chains at solution state. Both skin permeation and retention characteristics of chitosan increased with the use of smaller chitosan molecules with reduced acetyl content and size, and increased positive charge density. The ratio of epidermal to dermal chitosan content decreased with the use of these chitosan molecules as their accumulation in dermis (3.90% to 18.22%) was raised to a greater extent than epidermis (0.62% to 1.92%). A larger dermal chitosan accumulation nonetheless did not promote the transdermal polymer passage more than the epidermal chitosan. A small increase in epidermal chitosan content apparently could fluidize the stratum corneum and was more essential to dictate molecular permeation into dermis and systemic circulation. The histology technique aided Fourier-transform infrared spectroscopy imaging approach introduces a new dimension to the mechanistic aspect of chitosan in transdermal delivery. PMID:26695532

  6. Fourier analysis of a gated blood-pool study during atrial flutter

    SciTech Connect

    Makler, P.T. Jr.; McCarthy, D.M.; London, J.W.; Sandler, M.S.; Alavi, A.

    1983-08-01

    First-harmonic Fourier analysis of a gated blood-pool study is based on the assumption that the cardiac chambers contract once per cardiac cycle. In atrial arrhythmias this condition may not exist for the atria. We recently studied a patient with atrial flutter and 2:1 artioventricular conduction. There were predictable alterations in the first-harmonic Fourier phase and amplitude images. The observed changes from first-harmonic Fourier analysis were: (a) very low atrial amplitude values, and (b) absence of identifiable atrial regions on the phase image.

  7. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    NASA Astrophysics Data System (ADS)

    Ramamoorthy, Sripriya; Zhang, Yuan; Petrie, Tracy; Jacques, Steven; Wang, Ruikang; Nuttall, Alfred L.

    2015-12-01

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  8. Development of a phase-sensitive Fourier domain optical coherence tomography system to measure mouse organ of Corti vibrations in two cochlear turns

    SciTech Connect

    Ramamoorthy, Sripriya; Zhang, Yuan; Jacques, Steven; Petrie, Tracy; Wang, Ruikang; Nuttall, Alfred L.

    2015-12-31

    In this study, we have developed a phase-sensitive Fourier-domain optical coherence tomography system to simultaneously measure the in vivo inner ear vibrations in the hook area and second turn of the mouse cochlea. This technical development will enable measurement of intra-cochlear distortion products at ideal locations such as the distortion product generation site and reflection site. This information is necessary to un-mix the complex mixture of intra-cochlear waves comprising the DPOAE and thus leads to the non-invasive identification of the local region of cochlear damage.

  9. Phase Retrieval Using a Genetic Algorithm on the Systematic Image-Based Optical Alignment Testbed

    NASA Technical Reports Server (NTRS)

    Taylor, Jaime R.

    2003-01-01

    NASA s Marshall Space Flight Center s Systematic Image-Based Optical Alignment (SIBOA) Testbed was developed to test phase retrieval algorithms and hardware techniques. Individuals working with the facility developed the idea of implementing phase retrieval by breaking the determination of the tip/tilt of each mirror apart from the piston motion (or translation) of each mirror. Presented in this report is an algorithm that determines the optimal phase correction associated only with the piston motion of the mirrors. A description of the Phase Retrieval problem is first presented. The Systematic Image-Based Optical Alignment (SIBOA) Testbeb is then described. A Discrete Fourier Transform (DFT) is necessary to transfer the incoming wavefront (or estimate of phase error) into the spatial frequency domain to compare it with the image. A method for reducing the DFT to seven scalar/matrix multiplications is presented. A genetic algorithm is then used to search for the phase error. The results of this new algorithm on a test problem are presented.

  10. PRECL: A new method for interferometry imaging from closure phase

    NASA Astrophysics Data System (ADS)

    Ikeda, Shiro; Tazaki, Fumie; Akiyama, Kazunori; Hada, Kazuhiro; Honma, Mareki

    2016-06-01

    For short-wavelength VLBI observations, it is difficult to measure the phase of the visibility function accurately. The closure phases are reliable measurements under this situation, though it is not sufficient to retrieve all of the phase information. We propose a new method, phase retrieval from closure phase (PRECL). PRECL estimates all the visibility phases only from the closure phases. Combining PRECL with a sparse modeling method we have already proposed, the imaging process of VLBI does not rely on a dirty image or self-calibration. The proposed method is tested numerically and the results are promising.

  11. Application of group analysis to the spatially homogeneous and isotropic Boltzmann equation with source using its Fourier image

    NASA Astrophysics Data System (ADS)

    Grigoriev, Yurii N.; Meleshko, Sergey V.; Suriyawichitseranee, Amornrat

    2015-06-01

    Group analysis of the spatially homogeneous and molecular energy dependent Boltzmann equations with source term is carried out. The Fourier transform of the Boltzmann equation with respect to the molecular velocity variable is considered. The correspondent determining equation of the admitted Lie group is reduced to a partial differential equation for the admitted source. The latter equation is analyzed by an algebraic method. A complete group classification of the Fourier transform of the Boltzmann equation with respect to a source function is given. The representation of invariant solutions and corresponding reduced equations for all obtained source functions are also presented.

  12. Real-time measurement of alveolar size and population using phase contrast x-ray imaging

    PubMed Central

    Leong, Andrew F.T.; Buckley, Genevieve A.; Paganin, David M.; Hooper, Stuart B.; Wallace, Megan J.; Kitchen, Marcus J.

    2014-01-01

    Herein a propagation-based phase contrast x-ray imaging technique for measuring particle size and number is presented. This is achieved with an algorithm that utilizes the Fourier space signature of the speckle pattern associated with the images of particles. We validate this algorithm using soda-lime glass particles, demonstrating its effectiveness on random and non-randomly packed particles. This technique is then applied to characterise lung alveoli, which are difficult to measure dynamically in vivo with current imaging modalities due to inadequate temporal resolution and/or depth of penetration and field-of-view. We obtain an important result in that our algorithm is able to measure changes in alveolar size on the micron scale during ventilation and shows the presence of alveolar recruitment/de-recruitment in newborn rabbit kittens. This technique will be useful for ventilation management and lung diagnostic procedures. PMID:25426328

  13. Real-time measurement of alveolar size and population using phase contrast x-ray imaging.

    PubMed

    Leong, Andrew F T; Buckley, Genevieve A; Paganin, David M; Hooper, Stuart B; Wallace, Megan J; Kitchen, Marcus J

    2014-11-01

    Herein a propagation-based phase contrast x-ray imaging technique for measuring particle size and number is presented. This is achieved with an algorithm that utilizes the Fourier space signature of the speckle pattern associated with the images of particles. We validate this algorithm using soda-lime glass particles, demonstrating its effectiveness on random and non-randomly packed particles. This technique is then applied to characterise lung alveoli, which are difficult to measure dynamically in vivo with current imaging modalities due to inadequate temporal resolution and/or depth of penetration and field-of-view. We obtain an important result in that our algorithm is able to measure changes in alveolar size on the micron scale during ventilation and shows the presence of alveolar recruitment/de-recruitment in newborn rabbit kittens. This technique will be useful for ventilation management and lung diagnostic procedures. PMID:25426328

  14. Quantitative phase imaging of Breast cancer cell based on SLIM

    NASA Astrophysics Data System (ADS)

    Wu, Huaqin; Li, Zhifang; Li, Hui; Wu, Shulian

    2016-02-01

    We illustrated a novel optical microscopy technique to observe cell dynamics via spatial light interference microscopy (SLIM). SLIM combines Zemike's phase contrast microscopy and Gabor's holography. When the light passes through the transparent specimens, it could render high contrast intensity and record the phase information from the object. We reconstructed the Breast cancer cell phase image by SLIM and the reconstruction algorithm. Our investigation showed that SLIM has the ability to achieve the quantitative phase imaging (QPI).

  15. Multivariate Analysis of Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) Spectroscopic Data to Confirm Phase Partitioning in Methacrylate-Based Dentin Adhesive

    PubMed Central

    Ye, Qiang; Parthasarathy, Ranganathan; Abedin, Farhana; Laurence, Jennifer S.; Misra, Anil; Spencer, Paulette

    2014-01-01

    Water is ubiquitous in the mouths of healthy individuals and is a major interfering factor in the development of a durable seal between the tooth and composite restoration. Water leads to the formation of a variety of defects in dentin adhesives; these defects undermine the tooth-composite bond. Our group recently analyzed phase partitioning of dentin adhesives using high-performance liquid chromatography (HPLC). The concentration measurements provided by HPLC offered a more thorough representation of current adhesive performance and elucidated directions to be taken for further improvement. The sample preparation and instrument analysis using HPLC are, however, time-consuming and labor-intensive. The objective of this work was to develop a methodology for rapid, reliable, and accurate quantitative analysis of near-equilibrium phase partitioning in adhesives exposed to conditions simulating the wet oral environment. Analysis by Fourier transform infrared (FT-IR) spectroscopy in combination with multivariate statistical methods, including partial least squares (PLS) regression and principal component regression (PCR), were used for multivariate calibration to quantify the compositions in separated phases. Excellent predictions were achieved when either the hydrophobic-rich phase or the hydrophilic-rich phase mixtures were analyzed. These results indicate that FT-IR spectroscopy has excellent potential as a rapid method of detection and quantification of dentin adhesives that experience phase separation under conditions that simulate the wet oral environment. PMID:24359662

  16. Analysis and measurement of the modulation transfer function of harmonic shear wave induced phase encoding imaging.

    PubMed

    McAleavey, Stephen A

    2014-05-01

    Shear wave induced phase encoding (SWIPE) imaging generates ultrasound backscatter images of tissue-like elastic materials by using traveling shear waves to encode the lateral position of the scatters in the phase of the received echo. In contrast to conventional ultrasound B-scan imaging, SWIPE offers the potential advantages of image formation without beam focusing or steering from a single transducer element, lateral resolution independent of aperture size, and the potential to achieve relatively high lateral resolution with low frequency ultrasound. Here a Fourier series description of the phase modulated echo signal is developed, demonstrating that echo harmonics at multiples of the shear wave frequency reveal target k-space data at identical multiples of the shear wavenumber. Modulation transfer functions of SWIPE imaging systems are calculated for maximum shear wave acceleration and maximum shear constraints, and compared with a conventionally focused aperture. The relative signal-to-noise ratio of the SWIPE method versus a conventionally focused aperture is found through these calculations. Reconstructions of wire targets in a gelatin phantom using 1 and 3.5 MHz ultrasound and a cylindrical shear wave source are presented, generated from the fundamental and second harmonic of the shear wave modulation frequency, demonstrating weak dependence of lateral resolution with ultrasound frequency. PMID:24815265

  17. Analysis and measurement of the modulation transfer function of harmonic shear wave induced phase encoding imaging

    PubMed Central

    McAleavey, Stephen A.

    2014-01-01

    Shear wave induced phase encoding (SWIPE) imaging generates ultrasound backscatter images of tissue-like elastic materials by using traveling shear waves to encode the lateral position of the scatters in the phase of the received echo. In contrast to conventional ultrasound B-scan imaging, SWIPE offers the potential advantages of image formation without beam focusing or steering from a single transducer element, lateral resolution independent of aperture size, and the potential to achieve relatively high lateral resolution with low frequency ultrasound. Here a Fourier series description of the phase modulated echo signal is developed, demonstrating that echo harmonics at multiples of the shear wave frequency reveal target k-space data at identical multiples of the shear wavenumber. Modulation transfer functions of SWIPE imaging systems are calculated for maximum shear wave acceleration and maximum shear constraints, and compared with a conventionally focused aperture. The relative signal-to-noise ratio of the SWIPE method versus a conventionally focused aperture is found through these calculations. Reconstructions of wire targets in a gelatin phantom using 1 and 3.5 MHz ultrasound and a cylindrical shear wave source are presented, generated from the fundamental and second harmonic of the shear wave modulation frequency, demonstrating weak dependence of lateral resolution with ultrasound frequency. PMID:24815265

  18. Characterization of skin abnormalities in a mouse model of osteogenesis imperfecta using high resolution magnetic resonance imaging and Fourier transform infrared imaging spectroscopy.

    PubMed

    Canuto, H C; Fishbein, K W; Huang, A; Doty, S B; Herbert, R A; Peckham, J; Pleshko, N; Spencer, R G

    2012-01-01

    Evaluation of the skin phenotype in osteogenesis imperfecta (OI) typically involves biochemical measurements, such as histologic or biochemical assessment of the collagen produced from biopsy-derived dermal fibroblasts. As an alternative, the current study utilized non-invasive magnetic resonance imaging (MRI) microscopy and optical spectroscopy to define biophysical characteristics of skin in an animal model of OI. MRI of skin harvested from control, homozygous oim/oim and heterozygous oim/+ mice demonstrated several differences in anatomic and biophysical properties. Fourier transform infrared imaging spectroscopy (FT-IRIS) was used to interpret observed MRI signal characteristics in terms of chemical composition. Differences between wild-type and OI mouse skin included the appearance of a collagen-depleted lower dermal layer containing prominent hair follicles in the oim/oim mice, accounting for 55% of skin thickness in these. The MRI magnetization transfer rate was lower by 50% in this layer as compared to the upper dermis, consistent with lower collagen content. The MRI transverse relaxation time, T2, was greater by 30% in the dermis of the oim/oim mice compared to controls, consistent with a more highly hydrated collagen network. Similarly, an FT-IRIS-defined measure of collagen integrity was 30% lower in the oim/oim mice. We conclude that characterization of phenotypic differences between the skin of OI and wild-type mice by MRI and FT-IRIS is feasible, and that these techniques provide powerful complementary approaches for the analysis of the skin phenotype in animal models of disease. PMID:21845737

  19. Comparison of retinal thickness by Fourier-domain optical coherence tomography and OCT retinal image analysis software segmentation analysis derived from Stratus optical coherence tomography images

    PubMed Central

    Tátrai, Erika; Ranganathan, Sudarshan; Ferencz, Mária; DeBuc, Delia Cabrera; Somfai, Gábor Márk

    2011-01-01

    Purpose: To compare thickness measurements between Fourier-domain optical coherence tomography (FD-OCT) and time-domain OCT images analyzed with a custom-built OCT retinal image analysis software (OCTRIMA). Methods: Macular mapping (MM) by StratusOCT and MM5 and MM6 scanning protocols by an RTVue-100 FD-OCT device are performed on 11 subjects with no retinal pathology. Retinal thickness (RT) and the thickness of the ganglion cell complex (GCC) obtained with the MM6 protocol are compared for each early treatment diabetic retinopathy study (ETDRS)-like region with corresponding results obtained with OCTRIMA. RT results are compared by analysis of variance with Dunnett post hoc test, while GCC results are compared by paired t-test. Results: A high correlation is obtained for the RT between OCTRIMA and MM5 and MM6 protocols. In all regions, the StratusOCT provide the lowest RT values (mean difference 43 ± 8 μm compared to OCTRIMA, and 42 ± 14 μm compared to RTVue MM6). All RTVue GCC measurements were significantly thicker (mean difference between 6 and 12 μm) than the GCC measurements of OCTRIMA. Conclusion: High correspondence of RT measurements is obtained not only for RT but also for the segmentation of intraretinal layers between FD-OCT and StratusOCT-derived OCTRIMA analysis. However, a correction factor is required to compensate for OCT-specific differences to make measurements more comparable to any available OCT device. PMID:21639572

  20. Multi-oriented windowed harmonic phase reconstruction for robust cardiac strain imaging.

    PubMed

    Cordero-Grande, Lucilio; Royuela-del-Val, Javier; Sanz-Estébanez, Santiago; Martín-Fernández, Marcos; Alberola-López, Carlos

    2016-04-01

    The purpose of this paper is to develop a method for direct estimation of the cardiac strain tensor by extending the harmonic phase reconstruction on tagged magnetic resonance images to obtain more precise and robust measurements. The extension relies on the reconstruction of the local phase of the image by means of the windowed Fourier transform and the acquisition of an overdetermined set of stripe orientations in order to avoid the phase interferences from structures outside the myocardium and the instabilities arising from the application of a gradient operator. Results have shown that increasing the number of acquired orientations provides a significant improvement in the reproducibility of the strain measurements and that the acquisition of an extended set of orientations also improves the reproducibility when compared with acquiring repeated samples from a smaller set of orientations. Additionally, biases in local phase estimation when using the original harmonic phase formulation are greatly diminished by the one here proposed. The ideas here presented allow the design of new methods for motion sensitive magnetic resonance imaging, which could simultaneously improve the resolution, robustness and accuracy of motion estimates. PMID:26745763

  1. Monitoring stem cells in phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Lam, K. P.; Dempsey, K. P.; Collins, D. J.; Richardson, J. B.

    2016-04-01

    Understanding the mechanisms behind the proliferation of Mesenchymal Stem cells (MSCs) can offer a greater insight into the behaviour of these cells throughout their life cycles. Traditional methods of determining the rate of MSC differentiation rely on population based studies over an extended time period. However, such methods can be inadequate as they are unable to track cells as they interact; for example, in autologous cell therapies for osteoarthritis, the development of biological assays that could predict in vivo functional activity and biological action are particularly challenging. Here further research is required to determine non-histochemical biomarkers which provide correlations between cell survival and predictive functional outcome. This paper proposes using a (previously developed) advanced texture-based analysis algorithm to facilitate in vitro cells tracking using time-lapsed microscopy. The technique was adopted to monitor stem cells in the context of unlabelled, phase contrast imaging, with the goal of examining the cell to cell interactions in both monoculture and co-culture systems. The results obtained are analysed using established exploratory procedures developed for time series data and compared with the typical fluorescent-based approach of cell labelling. A review of the progress and the lessons learned are also presented.

  2. Resolution enhancement phase-contrast imaging by microsphere digital holography

    NASA Astrophysics Data System (ADS)

    Wang, Yunxin; Guo, Sha; Wang, Dayong; Lin, Qiaowen; Rong, Lu; Zhao, Jie

    2016-05-01

    Microsphere has shown the superiority of super-resolution imaging in the traditional 2D intensity microscope. Here a microsphere digital holography approach is presented to realize the resolution enhancement phase-contrast imaging. The system is designed by combining the microsphere with the image-plane digital holography. A microsphere very close to the object can increase the resolution by transforming the object wave from the higher frequency to the lower one. The resolution enhancement amplitude and phase images can be retrieved from a single hologram. The experiments are carried on the 1D and 2D gratings, and the results demonstrate that the observed resolution has been improved, meanwhile, the phase-contrast image is obtained. The proposed method can improve the transverse resolution in all directions based on a single exposure. Furthermore, this system has extended the application of the microsphere from the conventional 2D microscopic imaging to 3D phase-contrast microscopic imaging.

  3. Fourier transform profilometry for 360-deg shape using TDI camera

    NASA Astrophysics Data System (ADS)

    Su, Xianyu; Sajan, M. R.; Asundi, Anand K.

    1997-03-01

    This paper demonstrates a Fourier transform profilometry for 360 degree shape using TDI camera. Single stripe structured light can be recorded sequentially on one image when the camera is in TDI mode. An extended and deformed grating could be recorded in high speed and high resolution. The deformed fringe pattern is regarded as a fringe pattern in the Telecentric Fourier Transform Profilometry (TFTP), of which a wrapped phase is obtained directly. The unwrapped phase of TFTP gives the extended 360 degree profile without high frequency noise. Theoretical and experimental results are presented.

  4. Accurate estimators of correlation functions in Fourier space

    NASA Astrophysics Data System (ADS)

    Sefusatti, E.; Crocce, M.; Scoccimarro, R.; Couchman, H. M. P.

    2016-08-01

    Efficient estimators of Fourier-space statistics for large number of objects rely on fast Fourier transforms (FFTs), which are affected by aliasing from unresolved small-scale modes due to the finite FFT grid. Aliasing takes the form of a sum over images, each of them corresponding to the Fourier content displaced by increasing multiples of the sampling frequency of the grid. These spurious contributions limit the accuracy in the estimation of Fourier-space statistics, and are typically ameliorated by simultaneously increasing grid size and discarding high-frequency modes. This results in inefficient estimates for e.g. the power spectrum when desired systematic biases are well under per cent level. We show that using interlaced grids removes odd images, which include the dominant contribution to aliasing. In addition, we discuss the choice of interpolation kernel used to define density perturbations on the FFT grid and demonstrate that using higher order interpolation kernels than the standard Cloud-In-Cell algorithm results in significant reduction of the remaining images. We show that combining fourth-order interpolation with interlacing gives very accurate Fourier amplitudes and phases of density perturbations. This results in power spectrum and bispectrum estimates that have systematic biases below 0.01 per cent all the way to the Nyquist frequency of the grid, thus maximizing the use of unbiased Fourier coefficients for a given grid size and greatly reducing systematics for applications to large cosmological data sets.

  5. Optical cryptosystem of color images using random phase masks in the fractional wavelet transform domain

    NASA Astrophysics Data System (ADS)

    Singh, Hukum

    2016-05-01

    An optical color image encryption in the Fractional Wavelet Transform (FWT) domain is carried out. The original images are segregated into three colors components: R (red), G (green) and B (blue). After that the components are encrypted separately using double random phase encoding (DRPE) in the FWT domain. Random phase masks (RPMs) are used in the input as well as in Fourier plane. The images to be encrypted are transformed with the discrete wavelet transform (DWT), the resulting coefficients from the DWT are multiplied each one by masks different form RPM. Masks are independent each other and the results are applied an inverse discrete Wavelet Transform (IDWT), obtaining the encrypted images. The input images are recovered from their corresponding encrypted images by using the correct parameters of the FWT, and its digital implementation has been performed using MATLAB 7.6.0 (R2008a). The mother wavelet family and fractional orders associated with the FWT are extra keys that access difficulty an attacker; thereby the scheme is more secure as compared to conventional techniques. The sensitivity of proposed scheme is verified with encryption parameters, occlusions, and noise attacks.

  6. Phase contrast without phase plates and phase rings--optical solutions for improved imaging of phase structures.

    PubMed

    Piper, Timm; Piper, Jörg

    2013-10-01

    Using the optical methods described, phase specimens can be observed with a modified light microscope in enhanced clarity, purified from typical artifacts which are apparent in standard phase contrast illumination. In particular, haloing and shade-off are absent, lateral and vertical resolution are maximized and the image quality remains constant even in problematic preparations which cannot be well examined in normal phase contrast, such as specimens beyond a critical thickness or covered by obliquely situated cover slips. The background brightness and thus the range of contrast can be continuously modulated and specimens can be illuminated in concentric-peripheral, axial or paraxial light. Additional contrast effects can be achieved by spectral color separation. Normal glass or mirror lenses can be used; they do not need to be fitted with a phase plate or a phase ring. The methods described should be of general interest for all disciplines using phase microscopy. PMID:23913620

  7. High-sensitive and broad-dynamic-range quantitative phase imaging with spectral domain phase microscopy.

    PubMed

    Yan, Yangzhi; Ding, Zhihua; Shen, Yi; Chen, Zhiyan; Zhao, Chen; Ni, Yang

    2013-11-01

    Spectral domain phase microscopy for high-sensitive and broad-dynamic-range quantitative phase imaging is presented. The phase retrieval is realized in the depth domain to maintain a high sensitivity, while the phase information obtained in the spectral domain is exploited to extend the dynamic range of optical path difference. Sensitivity advantage of phase retrieved in the depth domain over that in the spectral domain is thoroughly investigated. The performance of the proposed depth domain phase based approach is illustrated by phase imaging of a resolution target and an onion skin. PMID:24216799

  8. Magnetic field induced differential neutron phase contrast imaging

    SciTech Connect

    Strobl, M.; Treimer, W.; Walter, P.; Keil, S.; Manke, I.

    2007-12-17

    Besides the attenuation of a neutron beam penetrating an object, induced phase changes have been utilized to provide contrast in neutron and x-ray imaging. In analogy to differential phase contrast imaging of bulk samples, the refraction of neutrons by magnetic fields yields image contrast. Here, it will be reported how double crystal setups can provide quantitative tomographic images of magnetic fields. The use of magnetic air prisms adequate to split the neutron spin states enables a distinction of field induced phase shifts and these introduced by interaction with matter.

  9. First principles multielectron mixed quantum/classical simulations in the condensed phase. I. An efficient Fourier-grid method for solving the many-electron problem

    NASA Astrophysics Data System (ADS)

    Glover, William J.; Larsen, Ross E.; Schwartz, Benjamin J.

    2010-04-01

    We introduce an efficient multielectron first-principles based electronic structure method, the two-electron Fourier-grid (2EFG) approach, that is particularly suited for use in mixed quantum/classical simulations of condensed-phase systems. The 2EFG method directly solves for the six-dimensional wave function of a two-electron Hamiltonian in a Fourier-grid representation such that the effects of electron correlation and exchange are treated exactly for both the ground and excited states. Due to the simplicity of a Fourier-grid representation, the 2EFG is readily parallelizable and we discuss its computational implementation in a distributed-memory parallel environment. We show our method is highly efficient, being able to find two-electron wave functions in ˜20 s on a modern desktop computer for a calculation this is equivalent to full configuration interaction (FCI) in a basis of 17 million Slater determinants. We benchmark the accuracy of the 2EFG by applying it to two electronic structure test problems: the harmonium atom and the sodium dimer. We find that even with a modest grid basis size, our method converges to the analytically exact solutions of harmonium in both the weakly and strongly correlated electron regimes. Our method also reproduces the low-lying potential energy curves of the sodium dimer to a similar level of accuracy as a valence CI calculation, thus demonstrating its applicability to molecular systems. In the following paper [W. J. Glover, R. E. Larsen, and B. J. Schwartz, J. Chem. Phys. 132, 144102 (2010)], we use the 2EFG method to explore the nature of the electronic states that comprise the charge-transfer-to-solvent absorption band of sodium anions in liquid tetrahydrofuran.

  10. Fourier analysis of RGB fringe-projection profilometry and robust phase-demodulation methods against crosstalk distortion.

    PubMed

    Padilla, Moises; Servin, Manuel; Garnica, Guillermo

    2016-07-11

    In this paper, we apply the frequency transfer function formalism to analyze the red, green and blue (RGB) phase-shifting fringe-projection profilometry technique. The phase-shifted patterns in RGB fringe projection are typically corrupted by crosstalk because the sensitivity curves of most projection-recording systems overlap. This crosstalk distortion needs to be compensated in order to obtain high quality measurements. We study phase-demodulation methods for null/mild, moderate, and severe levels of RGB crosstalk. For null/mild crosstalk distortion, we can estimate the searched phase-map using Bruning's 3-step phase-shifting algorithm (PSA). For moderate crosstalk, the recorded data is usually preprocessed before feeding it into the PSA; alternatively, in this paper we propose a computationally more efficient approach, which combines linear crosstalk compensation with the phase-demodulation algorithm. For severe RGB crosstalk, we expect non-sinusoidal fringes' profiles (distorting harmonics) and a significant uncertainty on the linear crosstalk calibration (which produces pseudo-detuning error). Analyzing these distorting phenomena, we conclude that squeezing interferometry is the most robust demodulation method for RGB fringe-projection techniques. Finally, we support our conclusions with numerical simulations and experimental results. PMID:27410817

  11. Broadband Phase Retrieval for Image-Based Wavefront Sensing

    NASA Technical Reports Server (NTRS)

    Dean, Bruce H.

    2007-01-01

    A focus-diverse phase-retrieval algorithm has been shown to perform adequately for the purpose of image-based wavefront sensing when (1) broadband light (typically spanning the visible spectrum) is used in forming the images by use of an optical system under test and (2) the assumption of monochromaticity is applied to the broadband image data. Heretofore, it had been assumed that in order to obtain adequate performance, it is necessary to use narrowband or monochromatic light. Some background information, including definitions of terms and a brief description of pertinent aspects of image-based phase retrieval, is prerequisite to a meaningful summary of the present development. Phase retrieval is a general term used in optics to denote estimation of optical imperfections or aberrations of an optical system under test. The term image-based wavefront sensing refers to a general class of algorithms that recover optical phase information, and phase-retrieval algorithms constitute a subset of this class. In phase retrieval, one utilizes the measured response of the optical system under test to produce a phase estimate. The optical response of the system is defined as the image of a point-source object, which could be a star or a laboratory point source. The phase-retrieval problem is characterized as image-based in the sense that a charge-coupled-device camera, preferably of scientific imaging quality, is used to collect image data where the optical system would normally form an image. In a variant of phase retrieval, denoted phase-diverse phase retrieval [which can include focus-diverse phase retrieval (in which various defocus planes are used)], an additional known aberration (or an equivalent diversity function) is superimposed as an aid in estimating unknown aberrations by use of an image-based wavefront-sensing algorithm. Image-based phase-retrieval differs from such other wavefront-sensing methods, such as interferometry, shearing interferometry, curvature

  12. Speckle imaging algorithms for planetary imaging

    SciTech Connect

    Johansson, E.

    1994-11-15

    I will discuss the speckle imaging algorithms used to process images of the impact sites of the collision of comet Shoemaker-Levy 9 with Jupiter. The algorithms use a phase retrieval process based on the average bispectrum of the speckle image data. High resolution images are produced by estimating the Fourier magnitude and Fourier phase of the image separately, then combining them and inverse transforming to achieve the final result. I will show raw speckle image data and high-resolution image reconstructions from our recent experiment at Lick Observatory.

  13. Simple phase extraction in x-ray differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Xin, Liu; Jin-Chuan, Guo; Yao-Hu, Lei; Ji, Li; Han-Ben, Niu

    2016-02-01

    A fast and simple method to extract phase-contrast images from interferograms is proposed, and its effectiveness is demonstrated through simulation and experiment. For x-ray differential phase contrast imaging, a strong attenuation signal acts as an overwhelming background intensity that obscures the weak phase signal so that no obvious phase-gradient information is detectable in the raw image. By subtracting one interferogram from another, chosen at particular intervals, the phase signal can be isolated and magnified. Project supported by the National Natural Science Foundation of China (Grant Nos. 61101175, 61571305, and 61227802).

  14. Image quality and dose efficiency of high energy phase sensitive x-ray imaging: Phantom studies

    PubMed Central

    Wong, Molly Donovan; Wu, Xizeng; Liu, Hong

    2014-01-01

    The goal of this preliminary study was to perform an image quality comparison of high energy phase sensitive imaging with low energy conventional imaging at similar radiation doses. The comparison was performed with the following phantoms: American College of Radiology (ACR), contrast-detail (CD), acrylic edge and tissue-equivalent. Visual comparison of the phantom images indicated comparable or improved image quality for all phantoms. Quantitative comparisons were performed through ACR and CD observer studies, both of which indicated higher image quality in the high energy phase sensitive images. The results of this study demonstrate the ability of high energy phase sensitive imaging to overcome existing challenges with the clinical implementation of phase contrast imaging and improve the image quality for a similar radiation dose as compared to conventional imaging near typical mammography energies. In addition, the results illustrate the capability of phase sensitive imaging to sustain the image quality improvement at high x-ray energies and for – breast – simulating phantoms, both of which indicate the potential to benefit fields such as mammography. Future studies will continue to investigate the potential for dose reduction and image quality improvement provided by high energy phase sensitive contrast imaging. PMID:24865208

  15. Phase contrast portal imaging for image-guided microbeam radiation therapy

    NASA Astrophysics Data System (ADS)

    Umetani, Keiji; Kondoh, Takeshi

    2014-03-01

    High-dose synchrotron microbeam radiation therapy is a unique treatment technique used to destroy tumors without severely affecting circumjacent healthy tissue. We applied a phase contrast technique to portal imaging in preclinical microbeam radiation therapy experiments. Phase contrast portal imaging is expected to enable us to obtain higherresolution X-ray images at therapeutic X-ray energies compared to conventional portal imaging. Frontal view images of a mouse head sample were acquired in propagation-based phase contrast imaging. The phase contrast images depicted edge-enhanced fine structures of the parietal bones surrounding the cerebrum. The phase contrast technique is expected to be effective in bony-landmark-based verification for image-guided radiation therapy.

  16. Effect of coherence loss in differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Cai, Weixing; Ning, Ruola; Liu, Jiangkun

    2014-03-01

    Coherence property of x-rays is critical in the grating-based differential phase contrast (DPC) imaging because it is the physical foundation that makes any form of phase contrast imaging possible. Loss of coherence is an important experimental issue, which results in increased image noise and reduced object contrast in DPC images and DPC cone beam CT (DPC-CBCT) reconstructions. In this study, experimental results are investigated to characterize the visibility loss (a measurement of coherence loss) in several different applications, including different-sized phantom imaging, specimen imaging and small animal imaging. Key measurements include coherence loss (relative intensity changes in the area of interest in phase-stepping images), contrast and noise level in retrieved DPC images, and contrast and noise level in reconstructed DPC-CBCT images. The influence of size and composition of imaged object (uniform object, bones, skin hairs, tissues, and etc) will be quantified. The same investigation is also applied for moiré pattern-based DPC-CBCT imaging with the same exposure dose. A theoretical model is established to relate coherence loss, noise level in phase stepping images (or moiré images), and the contrast and noise in the retrieved DPC images. Experiment results show that uniform objects lead to a small coherence loss even when the attenuation is higher, while objects with large amount of small structures result in huge coherence loss even when the attenuation is small. The theoretical model predicts the noise level in retrieved DPC images, and it also suggests a minimum dose required for DPC imaging to compensate for coherence loss.

  17. Interpretation of Line-Integrated Signals from 2-D Phase Contrast Imaging on LHD

    NASA Astrophysics Data System (ADS)

    Michael, Clive; Tanaka, Kenji; Vyacheslavov, Leonid; Sanin, Andrei; Kawahata, Kazuo; Okajima, S.

    Two dimensional (2D) phase contrast imaging (PCI) is an excellent method to measure core and edge turbulence with good spatial resolution (Δρ ˜ 0.1). General analytical consideration is given to the signal interpretation of the line-integrated signals, with specific application to images from 2D PCI. It is shown that the Fourier components of fluctuations having any non-zero component propagating along the line of sight are not detected. The ramifications of this constraint are discussed, including consideration of the angle between the sight line and flux surface normal. In the experimental geometry, at the point where the flux surfaces are tangent to the sight line, it is shown that it may be possible to detect large poloidally extended (though with small radial wavelength) structures, such as GAMS. The spatial localization technique of this diagnostic is illustrated with experimental data.

  18. Two dimensional vibrations of the guinea pig apex organ of Corti measured in vivo using phase sensitive Fourier domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Ramamoorthy, Sripriya; Zhang, Yuan; Petrie, Tracy; Fridberger, Anders; Ren, Tianying; Wang, Ruikang; Jacques, Steven L.; Nuttall, Alfred L.

    2015-02-01

    In this study, we measure the in vivo apical-turn vibrations of the guinea pig organ of Corti in both axial and radial directions using phase-sensitive Fourier domain optical coherence tomography. The apical turn in guinea pig cochlea has best frequencies around 100 - 500 Hz which are relevant for human speech. Prior measurements of vibrations in the guinea pig apex involved opening the otic capsule, which has been questioned on the basis of the resulting changes to cochlear hydrodynamics. Here this limitation is overcome by measuring the vibrations through bone without opening the otic capsule. Furthermore, we have significantly reduced the surgery needed to access the guinea pig apex in the axial direction by introducing a miniature mirror inside the bulla. The method and preliminary data are discussed in this article.

  19. Phase-retrieval ghost imaging of complex-valued objects

    SciTech Connect

    Gong Wenlin; Han Shensheng

    2010-08-15

    An imaging approach, based on ghost imaging, is reported to recover a pure-phase object or a complex-valued object. Our analytical results, which are backed up by numerical simulations, demonstrate that both the complex-valued object and its amplitude-dependent part can be separately and nonlocally reconstructed using this approach. Both effects influencing the quality of reconstructed images and methods to further improve the imaging quality are also discussed.

  20. Phase space representation of spatially partially coherent imaging.

    PubMed

    Castaneda, Roman

    2008-08-01

    The phase space representation of imaging with optical fields in any state of spatial coherence is developed by using spatial coherence wavelets. It leads to new functions for describing the optical transfer and response of imaging systems when the field is represented by Wigner distribution functions. Specific imaging cases are analyzed in this context, and special attention is devoted to the imaging of two point sources. PMID:18670542

  1. Non-interferometric quantitative phase imaging of yeast cells

    NASA Astrophysics Data System (ADS)

    Poola, Praveen K.; Pandiyan, Vimal Prabhu; John, Renu

    2015-12-01

    Real-time imaging of live cells is quite difficult without the addition of external contrast agents. Various methods for quantitative phase imaging of living cells have been proposed like digital holographic microscopy and diffraction phase microscopy. In this paper, we report theoretical and experimental results of quantitative phase imaging of live yeast cells with nanometric precision using transport of intensity equations (TIE). We demonstrate nanometric depth sensitivity in imaging live yeast cells using this technique. This technique being noninterferometric, does not need any coherent light sources and images can be captured through a regular bright-field microscope. This real-time imaging technique would deliver the depth or 3-D volume information of cells and is highly promising in real-time digital pathology applications, screening of pathogens and staging of diseases like malaria as it does not need any preprocessing of samples.

  2. Kernel Phase and Kernel Amplitude in Fizeau Imaging

    NASA Astrophysics Data System (ADS)

    Pope, Benjamin J. S.

    2016-09-01

    Kernel phase interferometry is an approach to high angular resolution imaging which enhances the performance of speckle imaging with adaptive optics. Kernel phases are self-calibrating observables that generalize the idea of closure phases from non-redundant arrays to telescopes with arbitrarily shaped pupils, by considering a matrix-based approximation to the diffraction problem. In this paper I discuss the recent fhistory of kernel phase, in particular in the matrix-based study of sparse arrays, and propose an analogous generalization of the closure amplitude to kernel amplitudes. This new approach can self-calibrate throughput and scintillation errors in optical imaging, which extends the power of kernel phase-like methods to symmetric targets where amplitude and not phase calibration can be a significant limitation, and will enable further developments in high angular resolution astronomy.

  3. Adaptive optics and phase diversity imaging for responsive space applications.

    SciTech Connect

    Smith, Mark William; Wick, David Victor

    2004-11-01

    The combination of phase diversity and adaptive optics offers great flexibility. Phase diverse images can be used to diagnose aberrations and then provide feedback control to the optics to correct the aberrations. Alternatively, phase diversity can be used to partially compensate for aberrations during post-detection image processing. The adaptive optic can produce simple defocus or more complex types of phase diversity. This report presents an analysis, based on numerical simulations, of the efficiency of different modes of phase diversity with respect to compensating for specific aberrations during post-processing. It also comments on the efficiency of post-processing versus direct aberration correction. The construction of a bench top optical system that uses a membrane mirror as an active optic is described. The results of characterization tests performed on the bench top optical system are presented. The work described in this report was conducted to explore the use of adaptive optics and phase diversity imaging for responsive space applications.

  4. Absorption-Mode Fourier Transform Mass Spectrometry: the Effects of Apodization and Phasing on Modified Protein Spectra

    PubMed Central

    Qi, Yulin; Li, Huilin; Wills, Rebecca H.; Perez-Hurtado, Pilar; Yu, Xiang; Kilgour, David. P. A.; Barrow, Mark P.; Lin, Cheng; O’Connor, Peter B.

    2014-01-01

    The method of phasing broadband FT-ICR spectra allows plotting the spectra in the absorption-mode; this new approach significantly improves the quality of the data at no extra cost. Herein, an internal calibration method for calculating the phase function has been developed, and successfully applied to the top-down spectra of modified proteins, where the peak intensities vary by >100×. The result shows that the use of absorption-mode spectra allows more peaks to be discerned within the recorded data, and this can reveal much greater information about the protein and modifications under investigation. In addition, noise and harmonic peaks can be assigned immediately in the absorption-mode. PMID:23568027

  5. A new imaging technique on strength and phase of pulsatile tissue-motion in brightness-mode ultrasonogram

    NASA Astrophysics Data System (ADS)

    Fukuzawa, Masayuki; Yamada, Masayoshi; Nakamori, Nobuyuki; Kitsunezuka, Yoshiki

    2007-03-01

    A new imaging technique has been developed for observing both strength and phase of pulsatile tissue-motion in a movie of brightness-mode ultrasonogram. The pulsatile tissue-motion is determined by evaluating the heartbeat-frequency component in Fourier transform of a series of pixel value as a function of time at each pixel in a movie of ultrasonogram (640x480pixels/frame, 8bit/pixel, 33ms/frame) taken by a conventional ultrasonograph apparatus (ATL HDI5000). In order to visualize both the strength and the phase of the pulsatile tissue-motion, we propose a pulsatile-phase image that is obtained by superimposition of color gradation proportional to the motion phase on the original ultrasonogram only at which the motion strength exceeds a proper threshold. The pulsatile-phase image obtained from a cranial ultrasonogram of normal neonate clearly reveals that the motion region gives good agreement with the anatomical shape and position of the middle cerebral artery and the corpus callosum. The motion phase is fluctuated with the shape of arteries revealing local obstruction of blood flow. The pulsatile-phase images in the neonates with asphyxia at birth reveal decreases of the motion region and increases of the phase fluctuation due to the weakness and local disturbance of blood flow, which is useful for pediatric diagnosis.

  6. High-speed parallel phase-shifting digital holography system using special-purpose computer for image reconstruction

    NASA Astrophysics Data System (ADS)

    Kakue, Takashi; Shimobaba, Tomoyoshi; Ito, Tomoyoshi

    2015-05-01

    We report a high-speed parallel phase-shifting digital holography system using a special-purpose computer for image reconstruction. Parallel phase-shifting digital holography is a technique capable of single-shot phase-shifting interferometry. This technique records information of multiple phase-shifted holograms required for calculation of phase-shifting interferometry with a single shot by using space-division multiplexing. This technique needs image-reconstruction process for a huge amount of recorded holograms. In particular, it takes a long time to calculate light propagation based on fast Fourier transform in the process and to obtain a motion picture of a dynamically and fast moving object. Then we designed a special-purpose computer for accelerating the image-reconstruction process of parallel phase-shifting digital holography. We developed a special-purpose computer consisting of VC707 evaluation kit (Xilinx Inc.) which is a field programmable gate array board. We also recorded holograms consisting of 128 × 128 pixels at a frame rate of 180,000 frames per second by the constructed parallel phase-shifting digital holography system. By applying the developed computer to the recorded holograms, we confirmed that the designed computer can accelerate the calculation of image-reconstruction process of parallel phase-shifting digital holography ~50 times faster than a CPU.

  7. Motion-compensated hand-held common-path Fourier-domain optical coherence tomography probe for image-guided intervention

    PubMed Central

    Huang, Yong; Liu, Xuan; Song, Cheol; Kang, Jin U.

    2012-01-01

    A motion-compensated, hand-held, common-path, Fourier-domain optical coherence tomography imaging probe has been developed for image-guided intervention during microsurgery. A hand-held prototype instrument was achieved by integrating an imaging fiber probe inside a stainless steel needle and attached to the ceramic shaft of a piezoelectric motor housed in an aluminum handle. The fiber probe obtains A-scan images. The distance information was extracted from the A-scans to track the sample surface distance and a fixed distance was maintained by a feedback motor control which effectively compensated hand tremor and target movements in the axial direction. Real-time data acquisition, processing, motion compensation, and image visualization and saving were implemented on a custom CPU-GPU hybrid architecture. We performed 10× zero padding to the raw spectrum to obtain 0.16 µm position accuracy with a compensation rate of 460 Hz. The root-mean-square error of hand-held distance variation from target position was measured to be 2.93 µm. We used a cross-correlation maximization-based shift correction algorithm for topology correction. To validate the system, we performed free-hand OCT M-scan imaging using various samples. PMID:23243562

  8. Experimental verification of phase retrieval of microbeads in high-speed phase imaging using digital holography

    NASA Astrophysics Data System (ADS)

    Matoba, Osamu; Xia, Peng; Quan, Xiangyu; Nagahama, Naoya; Tanimoto, Shunsuke; Nitta, Kouichi; Awatsuji, Yasuhiro

    2016-06-01

    One of fast measurement systems of μm-size phase objects based on digital holographic microscope with transmission geometry is presented. For building a 3D inspection system of the phase objects, the improvement of recovered phase image is discussed. Under the CW laser illumination, the movement afterimage of phase object was observed. The phase object is recovered by deconvolution filter. Experimental and numerical evaluation are presented.

  9. Overlapped Fourier coding for optical aberration removal

    PubMed Central

    Horstmeyer, Roarke; Ou, Xiaoze; Chung, Jaebum; Zheng, Guoan; Yang, Changhuei

    2014-01-01

    We present an imaging procedure that simultaneously optimizes a camera’s resolution and retrieves a sample’s phase over a sequence of snapshots. The technique, termed overlapped Fourier coding (OFC), first digitally pans a small aperture across a camera’s pupil plane with a spatial light modulator. At each aperture location, a unique image is acquired. The OFC algorithm then fuses these low-resolution images into a full-resolution estimate of the complex optical field incident upon the detector. Simultaneously, the algorithm utilizes redundancies within the acquired dataset to computationally estimate and remove unknown optical aberrations and system misalignments via simulated annealing. The result is an imaging system that can computationally overcome its optical imperfections to offer enhanced resolution, at the expense of taking multiple snapshots over time. PMID:25321982

  10. Bessel Fourier Orientation Reconstruction (BFOR): An Analytical Diffusion Propagator Reconstruction for Hybrid Diffusion Imaging and Computation of q-Space Indices

    PubMed Central

    Hosseinbor, A. Pasha; Chung, Moo K.; Wu, Yu-Chien; Alexander, Andrew L.

    2012-01-01

    The ensemble average propagator (EAP) describes the 3D average diffusion process of water molecules, capturing both its radial and angular contents. The EAP can thus provide richer information about complex tissue microstructure properties than the orientation distribution function (ODF), an angular feature of the EAP. Recently, several analytical EAP reconstruction schemes for multiple q-shell acquisitions have been proposed, such as diffusion propagator imaging (DPI) and spherical polar Fourier imaging (SPFI). In this study, a new analytical EAP reconstruction method is proposed, called Bessel Fourier orientation reconstruction (BFOR), whose solution is based on heat equation estimation of the diffusion signal for each shell acquisition, and is validated on both synthetic and real datasets. A significant portion of the paper is dedicated to comparing BFOR, SPFI, and DPI using hybrid, non-Cartesian sampling for multiple b-value acquisitions. Ways to mitigate the effects of Gibbs ringing on EAP reconstruction are also explored. In addition to analytical EAP reconstruction, the aforementioned modeling bases can be used to obtain rotationally invariant q-space indices of potential clinical value, an avenue which has not yet been thoroughly explored. Three such measures are computed: zero-displacement probability (Po), mean squared displacement (MSD), and generalized fractional anisotropy (GFA). PMID:22963853

  11. Phase contrast imaging of buccal mucosa tissues-Feasibility study

    NASA Astrophysics Data System (ADS)

    Fatima, A.; Tripathi, S.; Shripathi, T.; Kulkarni, V. K.; Banda, N. R.; Agrawal, A. K.; Sarkar, P. S.; Kashyap, Y.; Sinha, A.

    2015-06-01

    Phase Contrast Imaging (PCI) technique has been used to interpret physical parameters obtained from the image taken on the normal buccal mucosa tissue extracted from cheek of a patient. The advantages of this method over the conventional imaging techniques are discussed. PCI technique uses the X-ray phase shift at the edges differentiated by very minute density differences and the edge enhanced high contrast images reveal details of soft tissues. The contrast in the images produced is related to changes in the X-ray refractive index of the tissues resulting in higher clarity compared with conventional absorption based X-ray imaging. The results show that this type of imaging has better ability to visualize microstructures of biological soft tissues with good contrast, which can lead to the diagnosis of lesions at an early stage of the diseases.

  12. Image fusion in x-ray differential phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Haas, W.; Polyanskaya, M.; Bayer, F.; Gödel, K.; Hofmann, H.; Rieger, J.; Ritter, A.; Weber, T.; Wucherer, L.; Durst, J.; Michel, T.; Anton, G.; Hornegger, J.

    2012-02-01

    Phase-contrast imaging is a novel modality in the field of medical X-ray imaging. The pioneer method is the grating-based interferometry which has no special requirements to the X-ray source and object size. Furthermore, it provides three different types of information of an investigated object simultaneously - absorption, differential phase-contrast and dark-field images. Differential phase-contrast and dark-field images represent a completely new information which has not yet been investigated and studied in context of medical imaging. In order to introduce phase-contrast imaging as a new modality into medical environment the resulting information about the object has to be correctly interpreted. The three output images reflect different properties of the same object the main challenge is to combine and visualize these data in such a way that it diminish the information explosion and reduce the complexity of its interpretation. This paper presents an intuitive image fusion approach which allows to operate with grating-based phase-contrast images. It combines information of the three different images and provides a single image. The approach is implemented in a fusion framework which is aimed to support physicians in study and analysis. The framework provides the user with an intuitive graphical user interface allowing to control the fusion process. The example given in this work shows the functionality of the proposed method and the great potential of phase-contrast imaging in medical practice.

  13. Phase-sensitive X-ray imager

    DOEpatents

    Baker, Kevin Louis

    2013-01-08

    X-ray phase sensitive wave-front sensor techniques are detailed that are capable of measuring the entire two-dimensional x-ray electric field, both the amplitude and phase, with a single measurement. These Hartmann sensing and 2-D Shear interferometry wave-front sensors do not require a temporally coherent source and are therefore compatible with x-ray tubes and also with laser-produced or x-pinch x-ray sources.

  14. Automated detection of cardiac phase from intracoronary ultrasound image sequences.

    PubMed

    Sun, Zheng; Dong, Yi; Li, Mengchan

    2015-01-01

    Intracoronary ultrasound (ICUS) is a widely used interventional imaging modality in clinical diagnosis and treatment of cardiac vessel diseases. Due to cyclic cardiac motion and pulsatile blood flow within the lumen, there exist changes of coronary arterial dimensions and relative motion between the imaging catheter and the lumen during continuous pullback of the catheter. The action subsequently causes cyclic changes to the image intensity of the acquired image sequence. Information on cardiac phases is implied in a non-gated ICUS image sequence. A 1-D phase signal reflecting cardiac cycles was extracted according to cyclical changes in local gray-levels in ICUS images. The local extrema of the signal were then detected to retrieve cardiac phases and to retrospectively gate the image sequence. Results of clinically acquired in vivo image data showed that the average inter-frame dissimilarity of lower than 0.1 was achievable with our technique. In terms of computational efficiency and complexity, the proposed method was shown to be competitive when compared with the current methods. The average frame processing time was lower than 30 ms. We effectively reduced the effect of image noises, useless textures, and non-vessel region on the phase signal detection by discarding signal components caused by non-cardiac factors. PMID:26406038

  15. Phase contrast image segmentation using a Laue analyser crystal

    NASA Astrophysics Data System (ADS)

    Kitchen, Marcus J.; Paganin, David M.; Uesugi, Kentaro; Allison, Beth J.; Lewis, Robert A.; Hooper, Stuart B.; Pavlov, Konstantin M.

    2011-02-01

    Dual-energy x-ray imaging is a powerful tool enabling two-component samples to be separated into their constituent objects from two-dimensional images. Phase contrast x-ray imaging can render the boundaries between media of differing refractive indices visible, despite them having similar attenuation properties; this is important for imaging biological soft tissues. We have used a Laue analyser crystal and a monochromatic x-ray source to combine the benefits of both techniques. The Laue analyser creates two distinct phase contrast images that can be simultaneously acquired on a high-resolution detector. These images can be combined to separate the effects of x-ray phase, absorption and scattering and, using the known complex refractive indices of the sample, to quantitatively segment its component materials. We have successfully validated this phase contrast image segmentation (PCIS) using a two-component phantom, containing an iodinated contrast agent, and have also separated the lungs and ribcage in images of a mouse thorax. Simultaneous image acquisition has enabled us to perform functional segmentation of the mouse thorax throughout the respiratory cycle during mechanical ventilation.

  16. Imaging of Phase Objects using Partially Coherent Illumination

    SciTech Connect

    Ravizza, F. L.

    2013-01-01

    Screening high-power laser optics for light intensifying phase objects that cause laserinduced damage on downstream optics is critical to sustaining laser operation. Identifying such flaws on large-apertures is quite challenging since they are relatively small and invisible to conventional inspection methods. A Linescan Phase Differential Imaging (LPDI) system was developed to rapidly identify these flaws on large-aperture optics within a single full-aperture dark-field image. We describe a two-step production phase object screening process consisting of LPDI mapping and image analysis, followed by high-resolution interferometry and propagation based evaluation of the downstream damage potential of identified flaws. An image simulation code capable of modeling the LPDI partially coherent illumination was used to optimize its phase object sensitivity.

  17. Transformation of light double cones in the human retina: the origin of trichromatism, of 4D-spatiotemporal vision, and of patchwise 4D Fourier transformation in Talbot imaging

    NASA Astrophysics Data System (ADS)

    Lauinger, Norbert

    1997-09-01

    The interpretation of the 'inverted' retina of primates as an 'optoretina' (a light cones transforming diffractive cellular 3D-phase grating) integrates the functional, structural, and oscillatory aspects of a cortical layer. It is therefore relevant to consider prenatal developments as a basis of the macro- and micro-geometry of the inner eye. This geometry becomes relevant for the postnatal trichromatic synchrony organization (TSO) as well as the adaptive levels of human vision. It is shown that the functional performances, the trichromatism in photopic vision, the monocular spatiotemporal 3D- and 4D-motion detection, as well as the Fourier optical image transformation with extraction of invariances all become possible. To transform light cones into reciprocal gratings especially the spectral phase conditions in the eikonal of the geometrical optical imaging before the retinal 3D-grating become relevant first, then in the von Laue resp. reciprocal von Laue equation for 3D-grating optics inside the grating and finally in the periodicity of Talbot-2/Fresnel-planes in the near-field behind the grating. It is becoming possible to technically realize -- at least in some specific aspects -- such a cortical optoretina sensor element with its typical hexagonal-concentric structure which leads to these visual functions.

  18. To enhance imaging performance of hybrid imaging systems by using two asymmetrical phase masks.

    PubMed

    Le, Van Nhu; Chen, Shouqian; Fan, Zhigang; Pham, Nghia Minh

    2016-02-10

    We propose the use of two asymmetrical phase masks combined with the subtracted imaging method to enhance the signal-to-noise ratio in wavefront coding systems. This subtracted imaging technique is similar to the variable pinhole diameter in confocal microscopy. Two different phase modulations of same phase masks are employed to promote the magnitude of the optical transfer function (OTF). The ratio factor is used to control the phase variation between two phase masks. The noise of decoded images is suppressed owing to the higher magnitude of the OTF than the wavefront coding systems with a phase mask. A tangent phase mask as an example is used to demonstrate our concept. Simulated results show that the performance promotion controls noise amplification of decoded images while maintaining a depth-of-field extension. PMID:26906377

  19. Phase Sensitive X-Ray Imaging: Towards its Interdisciplinary Applications

    NASA Astrophysics Data System (ADS)

    Kottler, C.; Revol, V.; Kaufmann, R.; Urban, C.; Knop, K.; Sennhauser, U.; Jerjen, I.; Lüthi, T.; Cardot, F.; Niedermann, P.; Morel, J.-P.; Maake, C.; Walt, H.; Knop, E.; Blanc, N.

    2010-04-01

    X-ray phase imaging including phase tomography has been attracting increasing attention during the past few decades. The advantage of X-ray phase imaging is that an extremely high sensitivity is achieved for weakly absorbing materials, such as biological soft tissues, which generate a poor contrast by conventional schemes. Especially for such living samples, where the reduction of the applied dose is of paramount interest, phase sensitive measurements schemes have an inherent potential for a significant dose reduction combined with an image quality enhancement. Several methods have been invented for x-ray phase contrast imaging that either use an approach based on interferometry, diffraction or wave-field propagation. Some of these techniques have a potential for commercial applications, such as in medicine, non-destructive testing, security and inspection. The scope of this manuscript thus deals with one particular such technique that measures the diffraction caused by the specimen by means of a grating interferometer. Examples of measurements are shown that depict the potential of phase contrast imaging for future commercial applications, such as in medical imaging, non-destructive testing and inspection for quality control. The current state of the technology is briefly reviewed as well as its shortcomings to be overcome with regard to the applications.

  20. Phase estimation for magnetic resonance imaging near metal prostheses

    NASA Astrophysics Data System (ADS)

    Bones, Philip J.; King, Laura J.; Millane, Rick P.

    2015-09-01

    Magnetic resonance imaging (MRI) has the potential to be the best technique for assessing complications in patients with metal orthopedic implants. The presence of fat can obscure definition of the other soft tissues in MRI images, so fat suppression is often required. However, the performance of existing fat suppression techniques is inadequate near implants, due to very significant magnetic field perturbations induced by the metal. The three-point Dixon technique is potentially a method of choice as it is able to suppress fat in the presence of inhomogeneities, but the success of this technique depends on being able to accurately calculate the phase shift. This is generally done using phase unwrapping and/or iterative reconstruction algorithms. Most current phase unwrapping techniques assume that the phase function is slowly varying and phase differences between adjacent points are limited to less than π radians in magnitude. Much greater phase differences can be present near metal implants. We present our experience with two phase unwrapping techniques which have been adapted to use prior knowledge of the implant. The first method identifies phase discontinuities before recovering the phase along paths through the image. The second method employs a transform to find the least squares solution to the unwrapped phase. Simulation results indicate that the methods show promise.