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Sample records for free-breathing abdominal phase-contrast

  1. Dual registration of abdominal motion for motility assessment in free-breathing data sets acquired using dynamic MRI

    NASA Astrophysics Data System (ADS)

    Menys, A.; Hamy, V.; Makanyanga, J.; Hoad, C.; Gowland, P.; Odille, F.; Taylor, S. A.; Atkinson, D.

    2014-08-01

    At present, registration-based quantification of bowel motility from dynamic MRI is limited to breath-hold studies. Here we validate a dual-registration technique robust to respiratory motion for the assessment of small bowel and colonic motility. Small bowel datasets were acquired in breath-hold and free-breathing in 20 healthy individuals. A pre-processing step using an iterative registration of the low rank component of the data was applied to remove respiratory motion from the free breathing data. Motility was then quantified with an existing optic-flow (OF) based registration technique to form a dual-stage approach, termed Dual Registration of Abdominal Motion (DRAM). The benefit of respiratory motion correction was assessed by (1) assessing the fidelity of automatically propagated segmental regions of interest (ROIs) in the small bowel and colon and (2) comparing parametric motility maps to a breath-hold ground truth. DRAM demonstrated an improved ability to propagate ROIs through free-breathing small bowel and colonic motility data, with median error decreased by 90% and 55%, respectively. Comparison between global parametric maps showed high concordance between breath-hold data and free-breathing DRAM. Quantification of segmental and global motility in dynamic MR data is more accurate and robust to respiration when using the DRAM approach.

  2. Effects of arterial blood flow on walls of the abdominal aorta: distributions of wall shear stress and oscillatory shear index determined by phase-contrast magnetic resonance imaging.

    PubMed

    Sughimoto, Koichi; Shimamura, Yoshiaki; Tezuka, Chie; Tsubota, Ken'ichi; Liu, Hao; Okumura, Kenichiro; Masuda, Yoshitada; Haneishi, Hideaki

    2016-07-01

    Although abdominal aortic aneurysms (AAAs) occur mostly inferior to the renal artery, the mechanism of the development of AAA in relation to its specific location is not yet clearly understood. The objective of this study was to evaluate the hypothesis that even healthy volunteers may manifest specific flow characteristics of blood flow and alter wall shear or oscillatory shear stress in the areas where AAAs commonly develop. Eight healthy male volunteers were enrolled in this prospective study, aged from 24 to 27. Phase-contrast magnetic resonance imaging (MRI) was performed with electrocardiographic triggering. Flow-sensitive four-dimensional MR imaging of the abdominal aorta, with three-directional velocity encoding, including simple morphological image acquisition, was performed. Information on specific locations on the aortic wall was applied to the flow encodes to calculate wall shear stress (WSS) and oscillatory shear index (OSI). While time-framed WSS showed the highest peak of 1.14 ± 0.25 Pa in the juxtaposition of the renal artery, the WSS plateaued to 0.61 Pa at the anterior wall of the abdominal aorta. The OSI peaked distal to the renal arteries at the posterior wall of the abdominal aorta of 0.249 ± 0.148, and was constantly elevated in the whole abdominal aorta at more than 0.14. All subjects were found to have elevated OSI in regions where AAAs commonly occur. These findings indicate that areas of constant peaked oscillatory shear stress in the infra-renal aorta may be one of the factors that lead to morphological changes over time, even in healthy individuals. PMID:26481791

  3. A free-breathing lung motion model

    NASA Astrophysics Data System (ADS)

    Zhao, Tianyu

    Lung cancer has been the leading cause of cancer deaths for decades in the United States. Although radiotherapy is one of the most effective treatments, side effects from error in delivery of radiation due to organ motion during breathing remain a significant issue. To compensate the breathing motion during the treatment, a free breathing lung motion model, x= x0+αv+betaf, was developed and discussed, where x is the position of a piece of tissue located at reference position x0. α is a parameter which characterizes the motion due to local air filling (motion as a function of tidal volume) and beta is the parameter that accounts for the motion due to the imbalance of dynamical stress distributions during inspiration and exhalation which cause lung motion hysteresis (motion as a function of airflow). The parameters α and beta together provide a quantitative characterization of breathing motion that inherently includes the complex hysteresis interplay. The theoretical foundation of the model was built by investigating the stress distribution inside of a lung and the biomechanical properties of the lung tissues. Accuracy of the model was investigated by using 49 free-breathing patient data sets. Applications of the model in localizing lung cancer, monitoring radiation damage and suppressing artifacts in free-breathing PET images were also discussed. This work supported in part by NIHR01CA096679 and NIHR01CA116712.

  4. Compressive phase contrast tomography

    NASA Astrophysics Data System (ADS)

    Maia, F.; MacDowell, A.; Marchesini, S.; Padmore, H. A.; Parkinson, D. Y.; Pien, J.; Schirotzek, A.; Yang, C.

    2010-08-01

    When x-rays penetrate soft matter, their phase changes more rapidly than their amplitude. Interference effects visible with high brightness sources creates higher contrast, edge enhanced images. When the object is piecewise smooth (made of big blocks of a few components), such higher contrast datasets have a sparse solution. We apply basis pursuit solvers to improve SNR, remove ring artifacts, reduce the number of views and radiation dose from phase contrast datasets collected at the Hard X-Ray Micro Tomography Beamline at the Advanced Light Source. We report a GPU code for the most computationally intensive task, the gridding and inverse gridding algorithm (non uniform sampled Fourier transform).

  5. Compressive Phase Contrast Tomography

    SciTech Connect

    Maia, Filipe; MacDowell, Alastair; Marchesini, Stefano; Padmore, Howard A.; Parkinson, Dula Y.; Pien, Jack; Schirotzek, Andre; Yang, Chao

    2010-09-01

    When x-rays penetrate soft matter, their phase changes more rapidly than their amplitude. Interference effects visible with high brightness sources creates higher contrast, edge enhanced images. When the object is piecewise smooth (made of big blocks of a few components), such higher contrast datasets have a sparse solution. We apply basis pursuit solvers to improve SNR, remove ring artifacts, reduce the number of views and radiation dose from phase contrast datasets collected at the Hard X-Ray Micro Tomography Beamline at the Advanced Light Source. We report a GPU code for the most computationally intensive task, the gridding and inverse gridding algorithm (non uniform sampled Fourier transform).

  6. Phase Contrast Imaging

    SciTech Connect

    Menk, Ralf Hendrik

    2008-11-13

    All standard (medical) x-ray imaging technologies, rely primarily on the amplitude properties of the incident radiation, and do not depend on its phase. This is unchanged since the discovery by Roentgen that the intensity of an x-ray beam, as measured by the exposure on a film, was related to the relative transmission properties of an object. However, recently various imaging techniques have emerged which depend on the phase of the x-rays as well as the amplitude. Phase becomes important when the beam is coherent and the imaging system is sensitive to interference phenomena. Significant new advances have been made in coherent optic theory and techniques, which now promise phase information in medical imaging. The development of perfect crystal optics and the increasing availability of synchrotron radiation facilities have contributed to a significant increase in the application of phase based imaging in materials and life sciences. Unique source characteristics such as high intensity, monochromaticity, coherence and high collimating provide an ideal source for advanced imaging. Phase contrast imaging has been applied in both projection and computed tomography modes, and recent applications have been made in the field of medical imaging. Due to the underlying principle of X-ray detection conventional image receptors register only intensities of wave fields and not their phases. During the last decade basically five different methods were developed that translate the phase information into intensity variations. These methods are based on measuring the phase shift {phi} directly (using interference phenomena), the gradient {nabla}{sub {phi}}, or the Laplacian {nabla}{sup 2}{phi}. All three methods can be applied to polychromatic X-ray sources keeping in mind that the native source is synchrotron radiation, featuring monochromatic and reasonable coherent X-ray beams. Due to the vast difference in the coefficients that are driven absorption and phase effects (factor 1

  7. Free-Breathing Phase Contrast MRI with Near 100% Respiratory Navigator Efficiency using k-space Dependent Respiratory Gating

    PubMed Central

    Akçakaya, Mehmet; Gulaka, Praveen; Basha, Tamer A.; Ngo, Long H.; Manning, Warren J.; Nezafat, Reza

    2013-01-01

    Purpose To investigate the efficacy of a novel respiratory motion scheme, where only the center of k-space is gated using respiratory navigators, versus a fully respiratory-gated acquisition for 3D flow imaging. Methods 3D flow images were acquired axially using a GRE sequence in a volume covering the ascending and descending aorta, and the pulmonary artery bifurcation in 12 healthy subjects (33.2±15.8 years; 5 men). For respiratory motion compensation, two gating & tracking strategies were used with a 7mm gating window: 1) All of k-space acquired within the gating window (fully-gated), 2) Central k-space acquired within the gating window, and the remainder of k-space acquired without any gating (center-gated). Each scan was repeated twice. Stroke volume, mean flow, peak velocity and signal-to-noise-ratio measurements were performed both on the ascending and the descending aorta for all acquisitions, which were compared using a linear mixed-effects model and Bland-Altman analysis. Results There were no statistical differences between the fully-gated and center-gated strategies for the quantification of stroke volume, peak velocity and mean flow, as well as the signal-to-noise-ratio measurements. Furthermore, the proposed center-gated strategy had significantly shorter acquisition time compared to the fully-gated strategy (13:19±3:02 vs. 19:35±5:02, P<0.001). Conclusions The proposed novel center-gated strategy for 3D flow MRI allows for markedly shorter acquisition time without any systematic variation in quantitative flow measurements in this small group of healthy volunteers. PMID:23900942

  8. Feasibility of Free-breathing CCTA using 256-MDCT.

    PubMed

    Liu, Zhuo; Sun, Ye; Zhang, Zhuolu; Chen, Lei; Hong, Nan

    2016-07-01

    Usually, coronary computed tomography angiography (CCTA) is performed during breath-holding to reduce artifact caused by respiration. The objective of this study was to evaluate the feasibility of free-breathing CCTA compared to breath-holding using CT scanner with wide detector. To evaluate the feasibility of CCTA during free-breathing using a 256-MDCT. In 80 patients who underwent CCTA, 40 were performed during breath-holding (group A), and the remaining 40 during free-breathing (group B). The quality scores for coronary arteries were analyzed and defined as: 3 (excellent), 2 (good), and 1 (poor). The image noise, signal-to-noise ratio and effective radiation dose as well as the heart rate variation were compared. The noise, signal-to-noise ratio, and effective radiation dose were not significantly different between the 2 groups. The mean heart rate variation between planning and scanning for group A was 7 ± 7.6 bpm, and larger than 3 ± 2.6 bpm for group B (P = 0.012). Quality scores of the free-breathing group were better than those of the breath-holding group (group A: 2.55 ± 0.64, group B: 2.85 ± 0.36, P = 0.018). Free-breathing CCTA is feasible on wide detector CT scanner to provide acceptable image quality with reduced heart rate variation and better images for certain patients. PMID:27399104

  9. Surface metrology by phase contrast

    NASA Astrophysics Data System (ADS)

    Baker, Lionel R.

    1990-08-01

    Increasing use of electrooptical imaging and detection systems in thermography high density information storage laser instrumentation and X-ray optics has led to a pressing need for machinecompatible sensors for the measurement of surface texture. This paper reviews recent advances in the use of deterministic and parametric noncontact methods for texture measurement and justifies the need for objective simple and yet precise means for displaying the microfinish of a machined surface. The design of a simple two channel phase contrast microscope is described which can be calibrated by test pieces and used as a means for optimising the process parameters involved in the generation of high quality surfaces. Typical results obtained with this technique including dynamic range and ultimate sensitivity are discussed. 1 . NEED FOR SURFACE METROLOGY Surface quality has a direct influence on product acceptability in many different industries including those concerned with optoelectronics and engineering. The influence may be cosmetic as with paint finish on a motor car body or functional for example when excessive wear rates may occur in a bearing surface with inadequate oil retention. Since perfection can never be achieved and overspecification can be costly it is clearly necessary to be able to define thresholds of acceptance in relation to different situations. Such thresholds do of course require agreed methods of measurement with traceability to national standards. The current trends in surface metrology are towards higher

  10. Free-breathing conformal irradiation of pancreatic cancer.

    PubMed

    Solla, Ignazio; Zucca, Sergio; Possanzini, Marco; Piras, Sara; Pusceddu, Claudio; Porru, Sergio; Meleddu, Gianfranco; Farace, Paolo

    2013-01-01

    The purpose of this study was to assess treatment margins in free-breathing irradiation of pancreatic cancer after bone alignment, and evaluate their impact on conformal radiotherapy. Fifteen patients with adenocarcinoma of the head of the pancreas underwent implantation of single fiducial marker. Intrafraction uncertainties were assessed on simulation four-dimensional computed tomography (4D CT) by calculating maximal intrafraction fiducial excursion (MIFE). In the first ten patients, after bony alignment, the position of the fiducial was identified on weekly acquired megavolt cone-beam CT (MV-CBCT). The interfraction residual uncertainties were estimated by measuring the fiducial displacements with respect to the position in the first session. Patient mean (pM) and patient standard deviation (pSD) of fiducial displacement, mean (μM) and standard deviation (μSD) of pM, and root-mean-square of pSD (σ(res)) were calculated. In the other five patients, MIFE was added to the residual component to obtain personalized margin. In these patients, conformal kidney sparing (CONKISS) irradiation was planned prescribing 54/45 Gy to PTV1/PTV2. The organ-at-risk limits were set according to current NCCN recommendation. No morbidity related to the fiducial marker implantation was recorded. In the first ten patients, along right-left, anterior-posterior, and inferior-superior directions, MIFE was variable (mean ± std = 0.24 ± 0.13 cm, 0.31 ± 0.14 cm, 0.83 ± 0.35 cm, respectively) and was at most 0.51, 0.53, and 1.56 cm, respectively. Along the same directions, μM were 0.09, -0.05, -0.05 cm, μSD were 0.30, 0.17, 0.33 cm, and σ(res) were 0.35, 0.26, and 0.30 cm, respectively. MIFE was not correlated with pM and pSD. In the five additional patients, it was possible to satisfy recommended dose limits, with the exception of slightly higher doses to small bowel. After bony alignment, the margins for target expansion can be obtained by adding personalized MIFE to the residual

  11. Phase contrast imaging of cochlear soft tissue.

    SciTech Connect

    Smith, S.; Hwang, M.; Rau, C.; Fishman, A.; Lee, W.; Richter, C.

    2011-01-01

    A noninvasive technique to image soft tissue could expedite diagnosis and disease management in the auditory system. We propose inline phase contrast imaging with hard X-rays as a novel method that overcomes the limitations of conventional absorption radiography for imaging soft tissue. In this study, phase contrast imaging of mouse cochleae was performed at the Argonne National Laboratory Advanced Photon Source. The phase contrast tomographic reconstructions show soft tissue structures of the cochlea, including the inner pillar cells, the inner spiral sulcus, the tectorial membrane, the basilar membrane, and the Reissner's membrane. The results suggest that phase contrast X-ray imaging and tomographic techniques hold promise to noninvasively image cochlear structures at an unprecedented cellular level.

  12. Kidney motion during free breathing and breath hold for MR-guided radiotherapy

    NASA Astrophysics Data System (ADS)

    Stam, Mette K.; van Vulpen, Marco; Barendrecht, Maurits M.; Zonnenberg, Bernard A.; Intven, Martijn; Crijns, Sjoerd P. M.; Lagendijk, Jan J. W.; Raaymakers, Bas W.

    2013-04-01

    Current treatments for renal cell carcinoma have a high complication rate due to the invasiveness of the treatment. With the MRI-linac it may be possible to treat renal tumours non-invasively with high-precision radiotherapy. This is expected to reduce complications. To deliver a static dose distribution, radiation gating will be used. In this study the reproducibility and efficiency of free breathing gating and a breath hold treatment of the kidney was investigated. For 15 patients with a renal lesion the kidney motion during 2 min of free breathing and 10 consecutive expiration breath holds was studied with 2D cine MRI. The variability in kidney expiration position and treatment efficiency for gating windows of 1 to 20 mm was measured for both breathing patterns. Additionally the time trend in free breathing and the variation in expiration breath hold kidney position with baseline shift correction was determined. In 80% of the patients the variation in expiration position during free breathing is smaller than 2 mm. No clinically relevant time trends were detected. The variation in expiration breath hold is for all patients larger than the free breathing expiration variation. Gating on free breathing is, for gating windows of 1 to 5 mm more efficient than breath hold without baseline correction. When applying a baseline correction to the breath hold it increases the treatment efficiency. The kidney position is more reproducible in expiration free breathing than non-guided expiration breath hold. For small gating windows it is also more time efficient. Since free breathing also seems more comfortable for the patients it is the preferred breathing pattern for MRI-Linac treatments of the kidney.

  13. Toward Clinically Compatible Phase-Contrast Mammography

    PubMed Central

    Scherer, Kai; Willer, Konstantin; Gromann, Lukas; Birnbacher, Lorenz; Braig, Eva; Grandl, Susanne; Sztrókay-Gaul, Anikó; Herzen, Julia; Mayr, Doris; Hellerhoff, Karin; Pfeiffer, Franz

    2015-01-01

    Phase-contrast mammography using laboratory X-ray sources is a promising approach to overcome the relatively low sensitivity and specificity of clinical, absorption-based screening. Current research is mostly centered on identifying potential diagnostic benefits arising from phase-contrast and dark-field mammography and benchmarking the latter with conventional state-of-the-art imaging methods. So far, little effort has been made to adjust this novel imaging technique to clinical needs. In this article, we address the key points for a successful implementation to a clinical routine in the near future and present the very first dose-compatible and rapid scan-time phase-contrast mammograms of both a freshly dissected, cancer-bearing mastectomy specimen and a mammographic accreditation phantom. PMID:26110618

  14. Phase-contrast and holographic computed laminography

    NASA Astrophysics Data System (ADS)

    Helfen, L.; Baumbach, T.; Cloetens, P.; Baruchel, J.

    2009-03-01

    In-line phase contrast is combined with laminography to image in three dimensions regions of interest in laterally extended flat specimens of weak absorption contrast. The principle of the method and a theoretical description of the imaging process are outlined. The present instrumental implementation enables reconstructing nondestructively the internal structure at different lateral specimen positions with micron resolution. The feasibility and application potential are demonstrated for both phase-contrast and holographic (i.e., using phase retrieval) laminography by the three-dimensional imaging of fuel-cell diffusion layers.

  15. Phase-contrast and holographic computed laminography

    SciTech Connect

    Helfen, L.; Baumbach, T.; Cloetens, P.; Baruchel, J.

    2009-03-09

    In-line phase contrast is combined with laminography to image in three dimensions regions of interest in laterally extended flat specimens of weak absorption contrast. The principle of the method and a theoretical description of the imaging process are outlined. The present instrumental implementation enables reconstructing nondestructively the internal structure at different lateral specimen positions with micron resolution. The feasibility and application potential are demonstrated for both phase-contrast and holographic (i.e., using phase retrieval) laminography by the three-dimensional imaging of fuel-cell diffusion layers.

  16. X-ray phase-contrast methods

    SciTech Connect

    Lider, V. V. Kovalchuk, M. V.

    2013-11-15

    This review is devoted to a comparative description of the methods for forming X-ray phase-contrast images of weakly absorbing (phase) objects. These include the crystal interferometer method, the Talbot interferometer method, diffraction-enhanced X-ray imaging, and the in-line method. The potential of their practical application in various fields of science and technology is discussed. The publications on the development and optimization of X-ray phase-contrast methods and the experimental study of phase objects are analyzed.

  17. Phased Contrast X-Ray Imaging

    ScienceCinema

    Erin Miller

    2012-12-31

    The Pacific Northwest National Laboratory is developing a range of technologies to broaden the field of explosives detection. Phased contrast X-ray imaging, which uses silicon gratings to detect distortions in the X-ray wave front, may be applicable to mail or luggage scanning for explosives; it can also be used in detecting other contraband, small-parts inspection, or materials characterization.

  18. Phase contrast in high resolution electron microscopy

    DOEpatents

    Rose, H.H.

    1975-09-23

    This patent relates to a device for developing a phase contrast signal for a scanning transmission electron microscope. The lens system of the microscope is operated in a condition of defocus so that predictable alternate concentric regions of high and low electron density exist in the cone of illumination. Two phase detectors are placed beneath the object inside the cone of illumination, with the first detector having the form of a zone plate, each of its rings covering alternate regions of either higher or lower electron density. The second detector is so configured that it covers the regions of electron density not covered by the first detector. Each detector measures the number of electrons incident thereon and the signal developed by the first detector is subtracted from the signal developed by the record detector to provide a phase contrast signal. (auth)

  19. Reconstruction methods for phase-contrast tomography

    SciTech Connect

    Raven, C.

    1997-02-01

    Phase contrast imaging with coherent x-rays can be distinguished in outline imaging and holography, depending on the wavelength {lambda}, the object size d and the object-to-detector distance r. When r << d{sup 2}{lambda}, phase contrast occurs only in regions where the refractive index fastly changes, i.e. at interfaces and edges in the sample. With increasing object-to-detector distance we come in the area of holographic imaging. The image contrast outside the shadow region of the object is due to interference of the direct, undiffracted beam and a beam diffracted by the object, or, in terms of holography, the interference of a reference wave with the object wave. Both, outline imaging and holography, offer the possibility to obtain three dimensional information of the sample in conjunction with a tomographic technique. But the data treatment and the kind of information one can obtain from the reconstruction is different.

  20. Phase contrast portal imaging using synchrotron radiation

    NASA Astrophysics Data System (ADS)

    Umetani, K.; Kondoh, T.

    2014-07-01

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  1. Phase contrast portal imaging using synchrotron radiation

    SciTech Connect

    Umetani, K.; Kondoh, T.

    2014-07-15

    Microbeam radiation therapy is an experimental form of radiation treatment with great potential to improve the treatment of many types of cancer. We applied a synchrotron radiation phase contrast technique to portal imaging to improve targeting accuracy for microbeam radiation therapy in experiments using small animals. An X-ray imaging detector was installed 6.0 m downstream from an object to produce a high-contrast edge enhancement effect in propagation-based phase contrast imaging. Images of a mouse head sample were obtained using therapeutic white synchrotron radiation with a mean beam energy of 130 keV. Compared to conventional portal images, remarkably clear images of bones surrounding the cerebrum were acquired in an air environment for positioning brain lesions with respect to the skull structure without confusion with overlapping surface structures.

  2. Differential phase contrast: An integral perspective

    NASA Astrophysics Data System (ADS)

    Lubk, A.; Zweck, J.

    2015-02-01

    Differential phase contrast (DPC) in a scanning transmission electron microscope is a widely employed technique for probing electromagnetic fields on the nanoscale. We show that the DPC signal corresponds to the averaged lateral probability current of the scattered electron probe. Based on this result we discuss the interpretation of DPC in terms of the projected electric and magnetic fields and the influence of experimental parameters thereon. We further show that DPC can be interpreted as a quantum weak measurement and that the reciprocal broad beam illumination technique is given by an astigmatic transport of intensity reconstruction.

  3. Gated CT imaging using a free-breathing respiration signal from flow-volume spirometry

    SciTech Connect

    D'Souza, Warren D.; Kwok, Young; Deyoung, Chad; Zacharapoulos, Nicholas; Pepelea, Mark; Klahr, Paul; Yu, Cedric X.

    2005-12-15

    Respiration-induced tumor motion is known to cause artifacts on free-breathing spiral CT images used in treatment planning. This leads to inaccurate delineation of target volumes on planning CT images. Flow-volume spirometry has been used previously for breath-holds during CT scans and radiation treatments using the active breathing control (ABC) system. We have developed a prototype by extending the flow-volume spirometer device to obtain gated CT scans using a PQ 5000 single-slice CT scanner. To test our prototype, we designed motion phantoms to compare image quality obtained with and without gated CT scan acquisition. Spiral and axial (nongated and gated) CT scans were obtained of phantoms with motion periods of 3-5 s and amplitudes of 0.5-2 cm. Errors observed in the volume estimate of these structures were as much as 30% with moving phantoms during CT simulation. Application of motion-gated CT with active breathing control reduced these errors to within 5%. Motion-gated CT was then implemented in patients and the results are presented for two clinical cases: lung and abdomen. In each case, gated scans were acquired at end-inhalation, end-exhalation in addition to a conventional free-breathing (nongated) scan. The gated CT scans revealed reduced artifacts compared with the conventional free-breathing scan. Differences of up to 20% in the volume of the structures were observed between gated and free-breathing scans. A comparison of the overlap of structures between the gated and free-breathing scans revealed misalignment of the structures. These results demonstrate the ability of flow-volume spirometry to reduce errors in target volumes via gating during CT imaging.

  4. Nonlinear phase contrast using a bacteriorhodopsin film

    NASA Astrophysics Data System (ADS)

    Iturbe Castillo, Marcelo D.; Sanchez-de-la-Llave, J. D.; Ramos Garcia, Ruben; Tepichin-Rodriguez, Eduardo; Olivos-Perez, L. I.

    2002-11-01

    In this paper we demonstrate a novel phase contrast system that employs a BR film. Since the filter is optically induced by the Fourier transform of the phase object, no alignment is necessary at the filter plane making it extremely robust. Due to the optical properties of BR films the phase filter can be induced with low light intensity levels. The material response allows operation at video frame rates, processing of high spatial resolution objects, and the use of relatively inexpensive laser sources. Such characteristics and the fact that BR films can be produced at a low cost makes the system simple to implement, relatively inexpensive and extremely robust. The effects of varying the illuminating area beyond the phase object area and filter saturation are also analyzed.

  5. Accelerating free breathing myocardial perfusion MRI using multi coil radial k - t SLR

    NASA Astrophysics Data System (ADS)

    Goud Lingala, Sajan; DiBella, Edward; Adluru, Ganesh; McGann, Christopher; Jacob, Mathews

    2013-10-01

    The clinical utility of myocardial perfusion MR imaging (MPI) is often restricted by the inability of current acquisition schemes to simultaneously achieve high spatio-temporal resolution, good volume coverage, and high signal to noise ratio. Moreover, many subjects often find it difficult to hold their breath for sufficiently long durations making it difficult to obtain reliable MPI data. Accelerated acquisition of free breathing MPI data can overcome some of these challenges. Recently, an algorithm termed as k - t SLR has been proposed to accelerate dynamic MRI by exploiting sparsity and low rank properties of dynamic MRI data. The main focus of this paper is to further improve k - t SLR and demonstrate its utility in considerably accelerating free breathing MPI. We extend its previous implementation to account for multi-coil radial MPI acquisitions. We perform k - t sampling experiments to compare different radial trajectories and determine the best sampling pattern. We also introduce a novel augmented Lagrangian framework to considerably improve the algorithm’s convergence rate. The proposed algorithm is validated using free breathing rest and stress radial perfusion data sets from two normal subjects and one patient with ischemia. k - t SLR was observed to provide faithful reconstructions at high acceleration levels with minimal artifacts compared to existing MPI acceleration schemes such as spatio-temporal constrained reconstruction and k - t SPARSE/SENSE.

  6. Phase Contrast Wavefront Sensing for Adaptive Optics

    NASA Technical Reports Server (NTRS)

    Bloemhof, E. E.; Wallace, J. K.; Bloemhof, E. E.

    2004-01-01

    Most ground-based adaptive optics systems use one of a small number of wavefront sensor technologies, notably (for relatively high-order systems) the Shack-Hartmann sensor, which provides local measurements of the phase slope (first-derivative) at a number of regularly-spaced points across the telescope pupil. The curvature sensor, with response proportional to the second derivative of the phase, is also sometimes used, but has undesirable noise propagation properties during wavefront reconstruction as the number of actuators becomes large. It is interesting to consider the use for astronomical adaptive optics of the "phase contrast" technique, originally developed for microscopy by Zemike to allow convenient viewing of phase objects. In this technique, the wavefront sensor provides a direct measurement of the local value of phase in each sub-aperture of the pupil. This approach has some obvious disadvantages compared to Shack-Hartmann wavefront sensing, but has some less obvious but substantial advantages as well. Here we evaluate the relative merits in a practical ground-based adaptive optics system.

  7. Monitoring stem cells in phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Lam, K. P.; Dempsey, K. P.; Collins, D. J.; Richardson, J. B.

    2016-04-01

    Understanding the mechanisms behind the proliferation of Mesenchymal Stem cells (MSCs) can offer a greater insight into the behaviour of these cells throughout their life cycles. Traditional methods of determining the rate of MSC differentiation rely on population based studies over an extended time period. However, such methods can be inadequate as they are unable to track cells as they interact; for example, in autologous cell therapies for osteoarthritis, the development of biological assays that could predict in vivo functional activity and biological action are particularly challenging. Here further research is required to determine non-histochemical biomarkers which provide correlations between cell survival and predictive functional outcome. This paper proposes using a (previously developed) advanced texture-based analysis algorithm to facilitate in vitro cells tracking using time-lapsed microscopy. The technique was adopted to monitor stem cells in the context of unlabelled, phase contrast imaging, with the goal of examining the cell to cell interactions in both monoculture and co-culture systems. The results obtained are analysed using established exploratory procedures developed for time series data and compared with the typical fluorescent-based approach of cell labelling. A review of the progress and the lessons learned are also presented.

  8. Quantitative phase-contrast confocal microscope

    PubMed Central

    Liu, Changgeng; Marchesini, Stefano; Kim, Myung K.

    2014-01-01

    We present a quantitative phase-contrast confocal microscope (QPCCM) by combining a line-scanning confocal system with digital holography (DH). This combination can merge the merits of these two different imaging modalities. High-contrast intensity images with low coherent noise, and the optical sectioning capability are made available due to the confocality. Phase profiles of the samples become accessible thanks to DH. QPCCM is able to quantitatively measure the phase variations of optical sections of the opaque samples and has the potential to take high-quality intensity and phase images of non-opaque samples such as many biological samples. Because each line scan is recorded by a hologram that may contain the optical aberrations of the system, it opens avenues for a variety of numerical aberration compensation methods and development of full digital adaptive optics confocal system to emulate current hardware-based adaptive optics system for biomedical imaging, especially ophthalmic imaging. Preliminary experiments with a microscope objective of NA 0.65 and 40 × on opaque samples are presented to demonstrate this idea. The measured lateral and axial resolutions of the intensity images from the current system are ~0.64μm and ~2.70μm respectively. The noise level of the phase profile by QPCCM is ~2.4nm which is better than the result by DH. PMID:25089404

  9. Fourier-based linear systems description of free-breathing pulmonary magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Capaldi, D. P. I.; Svenningsen, S.; Cunningham, I. A.; Parraga, G.

    2015-03-01

    Fourier-decomposition of free-breathing pulmonary magnetic resonance imaging (FDMRI) was recently piloted as a way to provide rapid quantitative pulmonary maps of ventilation and perfusion without the use of exogenous contrast agents. This method exploits fast pulmonary MRI acquisition of free-breathing proton (1H) pulmonary images and non-rigid registration to compensate for changes in position and shape of the thorax associated with breathing. In this way, ventilation imaging using conventional MRI systems can be undertaken but there has been no systematic evaluation of fundamental image quality measurements based on linear systems theory. We investigated the performance of free-breathing pulmonary ventilation imaging using a Fourier-based linear system description of each operation required to generate FDMRI ventilation maps. Twelve subjects with chronic obstructive pulmonary disease (COPD) or bronchiectasis underwent pulmonary function tests and MRI. Non-rigid registration was used to co-register the temporal series of pulmonary images. Pulmonary voxel intensities were aligned along a time axis and discrete Fourier transforms were performed on the periodic signal intensity pattern to generate frequency spectra. We determined the signal-to-noise ratio (SNR) of the FDMRI ventilation maps using a conventional approach (SNRC) and using the Fourier-based description (SNRF). Mean SNR was 4.7 ± 1.3 for subjects with bronchiectasis and 3.4 ± 1.8, for COPD subjects (p>.05). SNRF was significantly different than SNRC (p<.01). SNRF was approximately 50% of SNRC suggesting that the linear system model well-estimates the current approach.

  10. Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

    NASA Astrophysics Data System (ADS)

    Guyader, Jean-Marie; Bernardin, Livia; Douglas, Naomi H. M.; Poot, Dirk H. J.; Niessen, Wiro J.; Klein, Stefan

    2014-03-01

    The apparent diffusion coefficient (ADC) is an imaging biomarker providing quantitative information on the diffusion of water in biological tissues. This measurement could be of relevance in oncology drug development, but it suffers from a lack of reliability. ADC images are computed by applying a voxelwise exponential fitting to multiple diffusion-weighted MR images (DW-MRIs) acquired with different diffusion gradients. In the abdomen, respiratory motion induces misalignments in the datasets, creating visible artefacts and inducing errors in the ADC maps. We propose a multistep post-acquisition motion compensation pipeline based on 3D non-rigid registrations. It corrects for motion within each image and brings all DW-MRIs to a common image space. The method is evaluated on 10 datasets of free-breathing abdominal DW-MRIs acquired from healthy volunteers. Regions of interest (ROIs) are segmented in the right part of the abdomen and measurements are compared in the three following cases: no image processing, Gaussian blurring of the raw DW-MRIs and registration. Results show that both blurring and registration improve the visual quality of ADC images, but compared to blurring, registration yields visually sharper images. Measurement uncertainty is reduced both by registration and blurring. For homogeneous ROIs, blurring and registration result in similar median ADCs, which are lower than without processing. In a ROI at the interface between liver and kidney, registration and blurring yield different median ADCs, suggesting that uncorrected motion introduces a bias. Our work indicates that averaging procedures on the scanner should be avoided, as they remove the opportunity to perform motion correction.

  11. Optimization of Coronary Whole-Heart MRA Free Breathing Technique at 3T

    PubMed Central

    Gharib, Ahmed M.; Abd-Elmoniem, Khaled Z.; Herzka, Daniel A.; Ho, Vincent B.; Locklin, Julie; Tzatha, Efstathia; Stuber, Matthias; Pettigrew, Roderic I

    2011-01-01

    Four different techniques for 3T whole-heart coronary MRA using free-breathing 3D segmented parallel imaging and adiabatic T2-Prep were assessed. Coronary MRA at 3T is improved by shortening the acquisition window more than employing the highest spatial resolution. Double oblique whole-heart acquisitions result in better overall image quality and allow for better delineation of the LAD. It is possible to attain shorter acquisition windows and a smaller voxel size at 3T than previously reported at 1.5T. PMID:21871751

  12. Whole left ventricular functional assessment from two minutes free breathing multi-slice CINE acquisition

    NASA Astrophysics Data System (ADS)

    Usman, M.; Atkinson, D.; Heathfield, E.; Greil, G.; Schaeffter, T.; Prieto, C.

    2015-04-01

    Two major challenges in cardiovascular MRI are long scan times due to slow MR acquisition and motion artefacts due to respiratory motion. Recently, a Motion Corrected-Compressed Sensing (MC-CS) technique has been proposed for free breathing 2D dynamic cardiac MRI that addresses these challenges by simultaneously accelerating MR acquisition and correcting for any arbitrary motion in a compressed sensing reconstruction. In this work, the MC-CS framework is combined with parallel imaging for further acceleration, and is termed Motion Corrected Sparse SENSE (MC-SS). Validation of the MC-SS framework is demonstrated in eight volunteers and three patients for left ventricular functional assessment and results are compared with the breath-hold acquisitions as reference. A non-significant difference (P > 0.05) was observed in the volumetric functional measurements (end diastolic volume, end systolic volume, ejection fraction) and myocardial border sharpness values obtained with the proposed and gold standard methods. The proposed method achieves whole heart multi-slice coverage in 2 min under free breathing acquisition eliminating the time needed between breath-holds for instructions and recovery. This results in two-fold speed up of the total acquisition time in comparison to the breath-hold acquisition.

  13. Prospective respiratory-gated micro-CT of free breathing rodents.

    PubMed

    Ford, Nancy L; Nikolov, Hristo N; Norley, Chris J D; Thornton, Michael M; Foster, Paula J; Drangova, Maria; Holdsworth, David W

    2005-09-01

    Microcomputed tomography (Micro-CT) has the potential to noninvasively image the structure of organs in rodent models with high spatial resolution and relatively short image acquisition times. However, motion artifacts associated with the normal respiratory motion of the animal may arise when imaging the abdomen or thorax. To reduce these artifacts and the accompanying loss of spatial resolution, we propose a prospective respiratory gating technique for use with anaesthetized, free-breathing rodents. A custom-made bed with an embedded pressure chamber was connected to a pressure transducer. Anaesthetized animals were placed in the prone position on the bed with their abdomens located over the chamber. During inspiration, the motion of the diaphragm caused an increase in the chamber pressure, which was converted into a voltage signal by the transducer. An output voltage was used to trigger image acquisition at any desired time point in the respiratory cycle. Digital radiographic images were acquired of anaesthetized, free-breathing rats with a digital radiographic system to correlate the respiratory wave form with respiration-induced organ motion. The respiratory wave form was monitored and recorded simultaneously with the x-ray radiation pulses, and an imaging window was defined, beginning at end expiration. Phantom experiments were performed to verify that the respiratory gating apparatus was triggering the micro-CT system. Attached to the distensible phantom were 100 microm diameter copper wires and the measured full width at half maximum was used to assess differences in image quality between respiratory-gated and ungated imaging protocols. This experiment allowed us to quantify the improvement in the spatial resolution, and the reduction of motion artifacts caused by moving structures, in the images resulting from respiratory-gated image acquisitions. The measured wire diameters were 0.135 mm for the stationary phantom image, 0.137 mm for the image gated at end

  14. Acoustic radiation pressure: A 'phase contrast' agent for x-ray phase contrast imaging

    SciTech Connect

    Bailat, Claude J.; Hamilton, Theron J.; Rose-Petruck, Christoph; Diebold, Gerald J.

    2004-11-08

    We show that the radiation pressure exerted by a beam of ultrasound can be used for contrast enhancement in high-resolution x-ray imaging of tissue and soft materials. Interfacial features of objects are highlighted as a result of both the displacement introduced by the ultrasound and the inherent sensitivity of x-ray phase contrast imaging to density variations. The potential of the method is demonstrated by imaging microscopic tumor phantoms embedded into tissue with a thickness typically presented in mammography. The detection limit of micrometer size masses exceeds the resolution of currently available mammography imaging systems. The directionality of the acoustic radiation force and its localization in space permits the imaging of ultrasound-selected tissue volumes. The results presented here suggest that the method may permit the detection of tumors in soft tissue in their early stage of development.

  15. Adaptive optimisation of a generalised phase contrast beam shaping system

    NASA Astrophysics Data System (ADS)

    Kenny, F.; Choi, F. S.; Glückstad, J.; Booth, M. J.

    2015-05-01

    The generalised phase contrast (GPC) method provides versatile and efficient light shaping for a range of applications. We have implemented a generalised phase contrast system that used two passes on a single spatial light modulator (SLM). Both the pupil phase distribution and the phase contrast filter were generated by the SLM. This provided extra flexibility and control over the parameters of the system including the phase step magnitude, shape, radius and position of the filter. A feedback method for the on-line optimisation of these properties was also developed. Using feedback from images of the generated light field, it was possible to dynamically adjust the phase filter parameters to provide optimum contrast.

  16. A semi-automatic method for peak and valley detection in free-breathing respiratory waveforms

    SciTech Connect

    Lu Wei; Nystrom, Michelle M.; Parikh, Parag J.; Fooshee, David R.; Hubenschmidt, James P.; Bradley, Jeffrey D.; Low, Daniel A.

    2006-10-15

    The existing commercial software often inadequately determines respiratory peaks for patients in respiration correlated computed tomography. A semi-automatic method was developed for peak and valley detection in free-breathing respiratory waveforms. First the waveform is separated into breath cycles by identifying intercepts of a moving average curve with the inspiration and expiration branches of the waveform. Peaks and valleys were then defined, respectively, as the maximum and minimum between pairs of alternating inspiration and expiration intercepts. Finally, automatic corrections and manual user interventions were employed. On average for each of the 20 patients, 99% of 307 peaks and valleys were automatically detected in 2.8 s. This method was robust for bellows waveforms with large variations.

  17. Phase contrast image guidance for synchrotron microbeam radiotherapy

    NASA Astrophysics Data System (ADS)

    Pelliccia, Daniele; Crosbie, Jeffrey C.; Larkin, Kieran G.

    2016-08-01

    Recent image guidance developments for preclinical synchrotron microbeam radiotherapy represent a necessary step for future clinical translation of the technique. Image quality can be further improved using x-ray phase contrast, which is readily available at synchrotron facilities. We here describe a methodology for phase contrast image guidance at the Imaging and Medical Beamline at the Australian Synchrotron. Differential phase contrast is measured alongside conventional attenuation and used to improve the image quality. Post-processing based on the inverse Riesz transform is employed on the measured data to obtain noticeably sharper images. The procedure is extremely well suited for applications such as image guidance which require both visual assessment and sample alignment based on semi automatic image registration. Moreover, our approach can be combined with all other differential phase contrast imaging techniques, in all cases where a quantitative evaluation of the refractive index is not required.

  18. Phase contrast image guidance for synchrotron microbeam radiotherapy.

    PubMed

    Pelliccia, Daniele; Crosbie, Jeffrey C; Larkin, Kieran G

    2016-08-21

    Recent image guidance developments for preclinical synchrotron microbeam radiotherapy represent a necessary step for future clinical translation of the technique. Image quality can be further improved using x-ray phase contrast, which is readily available at synchrotron facilities. We here describe a methodology for phase contrast image guidance at the Imaging and Medical Beamline at the Australian Synchrotron. Differential phase contrast is measured alongside conventional attenuation and used to improve the image quality. Post-processing based on the inverse Riesz transform is employed on the measured data to obtain noticeably sharper images. The procedure is extremely well suited for applications such as image guidance which require both visual assessment and sample alignment based on semi automatic image registration. Moreover, our approach can be combined with all other differential phase contrast imaging techniques, in all cases where a quantitative evaluation of the refractive index is not required. PMID:27436750

  19. Helical x-ray differential phase contrast computed tomography

    NASA Astrophysics Data System (ADS)

    Qi, Zhihua; Thériault-Lauzier, Pascal; Bevins, Nicholas; Zambelli, Joseph; Li, Ke; Chen, Guang-Hong

    2011-03-01

    Helical computed tomography revolutionized the field of x-ray computed tomography two decades ago. The simultaneous translation of an image object with a standard computed tomography acquisition allows for fast volumetric scan for long image objects. X-ray phase sensitive imaging methods have been studied over the past few decades to provide new contrast mechanisms for imaging an object. A Talbot-Lau grating interferometer based differential phase contrast imaging method has recently demonstrated its potential for implementation in clinical and industrial applications. In this work, the principles of helical computed tomography are extended to differential phase contrast imaging to produce volumetric reconstructions based on fan-beam data. The method demonstrates the potential for helical differential phase contrast CT to scan long objects with relatively small detector coverage in the axial direction.

  20. Resolution enhancement phase-contrast imaging by microsphere digital holography

    NASA Astrophysics Data System (ADS)

    Wang, Yunxin; Guo, Sha; Wang, Dayong; Lin, Qiaowen; Rong, Lu; Zhao, Jie

    2016-05-01

    Microsphere has shown the superiority of super-resolution imaging in the traditional 2D intensity microscope. Here a microsphere digital holography approach is presented to realize the resolution enhancement phase-contrast imaging. The system is designed by combining the microsphere with the image-plane digital holography. A microsphere very close to the object can increase the resolution by transforming the object wave from the higher frequency to the lower one. The resolution enhancement amplitude and phase images can be retrieved from a single hologram. The experiments are carried on the 1D and 2D gratings, and the results demonstrate that the observed resolution has been improved, meanwhile, the phase-contrast image is obtained. The proposed method can improve the transverse resolution in all directions based on a single exposure. Furthermore, this system has extended the application of the microsphere from the conventional 2D microscopic imaging to 3D phase-contrast microscopic imaging.

  1. Adaptive optimisation of a generalised phase contrast beam shaping system

    PubMed Central

    Kenny, F.; Choi, F.S.; Glückstad, J.; Booth, M.J.

    2015-01-01

    The generalised phase contrast (GPC) method provides versatile and efficient light shaping for a range of applications. We have implemented a generalised phase contrast system that used two passes on a single spatial light modulator (SLM). Both the pupil phase distribution and the phase contrast filter were generated by the SLM. This provided extra flexibility and control over the parameters of the system including the phase step magnitude, shape, radius and position of the filter. A feedback method for the on-line optimisation of these properties was also developed. Using feedback from images of the generated light field, it was possible to dynamically adjust the phase filter parameters to provide optimum contrast. PMID:26089573

  2. Phase-contrast x-ray tomography using synchrotron radiation

    NASA Astrophysics Data System (ADS)

    Bonse, Ulrich; Beckmann, Felix; Bartscher, Markus; Biermann, Theodor; Busch, Frank; Guennewig, Olaf

    1997-10-01

    The principle and experimental l realization of x-ray phase- contrast in compute assisted microtomography ((mu) CT) at the micrometer resolution level is described. The camera used is a modification of a setup previously developed by us for attenuation-contrast (mu) CT using synchrotron x-rays. Phase detection is accomplished by employing the x-ray interferometer. By using x-ray phase contrast it is possible to image structural details in low-z biological tissues much better than with absorption contrast. The advantage of phase over attenuation contrast is not limited to light element or to low x-ray energies. Examples of applying phase contrast (mu) CT to the structural investigation of rat trigeminal nerve are given.

  3. Simultaneous de-noising in phase contrast tomography

    NASA Astrophysics Data System (ADS)

    Koehler, Thomas; Roessl, Ewald

    2012-07-01

    In this work, we investigate methods for de-noising of tomographic differential phase contrast and absorption contrast images. We exploit the fact that in grating-based differential phase contrast imaging (DPCI), first, several images are acquired simultaneously in exactly the same geometry, and second, these different images can show very different contrast-to-noise-ratios. These features of grating-based DPCI are used to generalize the conventional bilateral filter. Experiments using simulations show a superior de-noising performance of the generalized algorithm compared with the conventional one.

  4. Joint image reconstruction and motion parameter estimation for free-breathing navigator-gated cardiac MRI

    NASA Astrophysics Data System (ADS)

    Akçakaya, Mehmet; Basha, Tamer A.; Weingärtner, Sebastian; Nezafat, Reza

    2013-09-01

    We propose an acquisition and reconstruction technique for accelerated free-breathing cardiac MRI acquisitions. For the acquisition, a random undersampling pattern, including a fully-sampled center of k-space, is generated prospectively. The k-space lines specified by this undersampling pattern is acquired with respiratory navigating (NAV), where only the central k-space lines are acquired within the prespecified gating window. For the outer k-space lines, if the NAV signal corresponding to a k-space segment is outside the gating window, the segment is rejected, but not re-acquired. The reconstruction approach jointly estimates the underlying image using a compressed-sensing based approach, and the translational motion parameters for each segment for the outer k-space segments acquired outside the gating window. The feasibility of the approach is demonstrated in healthy adult subjects using whole-heart coronary MRI with a 3-fold accelerated random undersampling pattern. The proposed acquisition and reconstruction technique is compared to parallel imaging with uniform undersampling with 3-fold undersampling. The two techniques exhibit similar image quality with a shorter acquisition time for the proposed approach (4:25+/-0:31 minutes versus 6:52+/-0:19).

  5. Respiratory motion compensation algorithm of ultrasound hepatic perfusion data acquired in free-breathing

    NASA Astrophysics Data System (ADS)

    Wu, Kaizhi; Zhang, Xuming; Chen, Guangxie; Weng, Fei; Ding, Mingyue

    2013-10-01

    Images acquired in free breathing using contrast enhanced ultrasound exhibit a periodic motion that needs to be compensated for if a further accurate quantification of the hepatic perfusion analysis is to be executed. In this work, we present an algorithm to compensate the respiratory motion by effectively combining the PCA (Principal Component Analysis) method and block matching method. The respiratory kinetics of the ultrasound hepatic perfusion image sequences was firstly extracted using the PCA method. Then, the optimal phase of the obtained respiratory kinetics was detected after normalizing the motion amplitude and determining the image subsequences of the original image sequences. The image subsequences were registered by the block matching method using cross-correlation as the similarity. Finally, the motion-compensated contrast images can be acquired by using the position mapping and the algorithm was evaluated by comparing the TICs extracted from the original image sequences and compensated image subsequences. Quantitative comparisons demonstrated that the average fitting error estimated of ROIs (region of interest) was reduced from 10.9278 +/- 6.2756 to 5.1644 +/- 3.3431 after compensating.

  6. Differential phase contrast X-ray imaging system and components

    DOEpatents

    Stutman, Daniel; Finkenthal, Michael

    2014-07-01

    A differential phase contrast X-ray imaging system includes an X-ray illumination system, a beam splitter arranged in an optical path of the X-ray illumination system, and a detection system arranged in an optical path to detect X-rays after passing through the beam splitter.

  7. Phase contrast imaging with coherent high energy X-rays

    SciTech Connect

    Snigireva, I.

    1997-02-01

    X-ray imaging concern high energy domain (>6 keV) like a contact radiography, projection microscopy and tomography is used for many years to discern the features of the internal structure non destructively in material science, medicine and biology. In so doing the main contrast formation is absorption that makes some limitations for imaging of the light density materials and what is more the resolution of these techniques is not better than 10-100 {mu}m. It was turned out that there is now way in which to overcome 1{mu}m or even sub-{mu}m resolution limit except phase contrast imaging. It is well known in optics that the phase contrast is realised when interference between reference wave front and transmitted through the sample take place. Examples of this imaging are: phase contrast microscopy suggested by Zernike and Gabor (in-line) holography. Both of this techniques: phase contrast x-ray microscopy and holography are successfully progressing now in soft x-ray region. For imaging in the hard X-rays to enhance the contrast and to be able to resolve phase variations across the beam the high degree of the time and more importantly spatial coherence is needed. Because of this it was reasonable that the perfect crystal optics was involved like Bonse-Hart interferometry, double-crystal and even triple-crystal set-up using Laue and Bragg geometry with asymmetrically cut crystals.

  8. Optimization of a retrospective technique for respiratory-gated high speed micro-CT of free-breathing rodents

    NASA Astrophysics Data System (ADS)

    Ford, Nancy L.; Wheatley, Andrew R.; Holdsworth, David W.; Drangova, Maria

    2007-09-01

    The objective of this study was to develop a technique for dynamic respiratory imaging using retrospectively gated high-speed micro-CT imaging of free-breathing mice. Free-breathing C57Bl6 mice were scanned using a dynamic micro-CT scanner, comprising a flat-panel detector mounted on a slip-ring gantry. Projection images were acquired over ten complete gantry rotations in 50 s, while monitoring the respiratory motion in synchrony with projection-image acquisition. Projection images belonging to a selected respiratory phase were retrospectively identified and used for 3D reconstruction. The effect of using fewer gantry rotations—which influences both image quality and the ability to quantify respiratory function—was evaluated. Images reconstructed using unique projections from six or more gantry rotations produced acceptable images for quantitative analysis of lung volume, CT density, functional residual capacity and tidal volume. The functional residual capacity (0.15 ± 0.03 mL) and tidal volumes (0.08 ± 0.03 mL) measured in this study agree with previously reported measurements made using prospectively gated micro-CT and at higher resolution (150 µm versus 90 µm voxel spacing). Retrospectively gated micro-CT imaging of free-breathing mice enables quantitative dynamic measurement of morphological and functional parameters in the mouse models of respiratory disease, with scan times as short as 30 s, based on the acquisition of projection images over six gantry rotations.

  9. Graph-based retrospective 4D image construction from free-breathing MRI slice acquisitions

    NASA Astrophysics Data System (ADS)

    Tong, Yubing; Udupa, Jayaram K.; Ciesielski, Krzysztof C.; McDonough, Joseph M.; Mong, Andrew; Campbell, Robert M.

    2014-03-01

    4D or dynamic imaging of the thorax has many potential applications [1, 2]. CT and MRI offer sufficient speed to acquire motion information via 4D imaging. However they have different constraints and requirements. For both modalities both prospective and retrospective respiratory gating and tracking techniques have been developed [3, 4]. For pediatric imaging, x-ray radiation becomes a primary concern and MRI remains as the de facto choice. The pediatric subjects we deal with often suffer from extreme malformations of their chest wall, diaphragm, and/or spine, as such patient cooperation needed by some of the gating and tracking techniques are difficult to realize without causing patient discomfort. Moreover, we are interested in the mechanical function of their thorax in its natural form in tidal breathing. Therefore free-breathing MRI acquisition is the ideal modality of imaging for these patients. In our set up, for each coronal (or sagittal) slice position, slice images are acquired at a rate of about 200-300 ms/slice over several natural breathing cycles. This produces typically several thousands of slices which contain both the anatomic and dynamic information. However, it is not trivial to form a consistent and well defined 4D volume from these data. In this paper, we present a novel graph-based combinatorial optimization solution for constructing the best possible 4D scene from such data entirely in the digital domain. Our proposed method is purely image-based and does not need breath holding or any external surrogates or instruments to record respiratory motion or tidal volume. Both adult and children patients' data are used to illustrate the performance of the proposed method. Experimental results show that the reconstructed 4D scenes are smooth and consistent spatially and temporally, agreeing with known shape and motion of the lungs.

  10. Helical differential X-ray phase-contrast computed tomography.

    PubMed

    Fu, Jian; Willner, Marian; Chen, Liyuan; Tan, Renbo; Achterhold, Klaus; Bech, Martin; Herzen, Julia; Kunka, Danays; Mohr, Juergen; Pfeiffer, Franz

    2014-05-01

    We report on the first experimental results of helical differential phase-contrast computed tomography (helical DPC-CT) with a laboratory X-ray tube source and a Talbot-Lau grating interferometer. The results experimentally verify the feasibility of helical data acquisition and reconstruction in phase-contrast imaging, in analogy to its use in clinical CT systems. This allows fast and continuous volumetric scans for long objects with lengths exceeding the dimension of the detector. Since helical CT revolutionized the field of medical CT several years ago, we anticipate that this method will bring the same significant impact on the future medical and industrial applications of X-ray DPC-CT. PMID:24518822

  11. Interactive cell segmentation based on phase contrast optics.

    PubMed

    Su, Hang; Su, Zhou; Zheng, Shibao; Yang, Hua; Wei, Sha

    2014-01-01

    Cell segmentation in phase contrast microscopy images lays a crucial foundation for numerous subsequent computer-aided cell image analysis, but it encounters many unsolved challenges due to image qualities and artifacts caused by phase contrast optics. Addressing the unsolved challenges, the authors propose an interactive cell segmentation scheme over phase retardation features. After partitioning the images into phase homogeneous atoms, human annotations are propagated to unlabeled atoms over an affinity graph that is learned based on discrimination analysis. Then, an active query strategy is proposed for which the most informative unlabeled atom is selected for annotation, which is also propagated to the other unlabeled atoms. Cell segmentation converges to quality results after several rounds of interactions involving both the user's intentions and characteristics of image features. Experimental results demonstrate that cells with different optical properties are well segmented via the proposed approach. PMID:24211879

  12. Nonlinear dynamic phase contrast microscopy for microfluidic and microbiological applications

    NASA Astrophysics Data System (ADS)

    Denz, C.; Holtmann, F.; Woerdemann, M.; Oevermann, M.

    2008-08-01

    In live sciences, the observation and analysis of moving living cells, molecular motors or motion of micro- and nano-objects is a current field of research. At the same time, microfluidic innovations are needed for biological and medical applications on a micro- and nano-scale. Conventional microscopy techniques are reaching considerable limits with respect to these issues. A promising approach for this challenge is nonlinear dynamic phase contrast microscopy. It is an alternative full field approach that allows to detect motion as well as phase changes of living unstained micro-objects in real-time, thereby being marker free, without contact and non destructive, i.e. fully biocompatible. The generality of this system allows it to be combined with several other microscope techniques such as conventional bright field or fluorescence microscopy. In this article we will present the dynamic phase contrast technique and its applications in analysis of micro organismic dynamics, micro flow velocimetry and micro-mixing analysis.

  13. Grid-Based Fourier Transform Phase Contrast Imaging

    NASA Astrophysics Data System (ADS)

    Tahir, Sajjad

    Low contrast in x-ray attenuation imaging between different materials of low electron density is a limitation of traditional x-ray radiography. Phase contrast imaging offers the potential to improve the contrast between such materials, but due to the requirements on the spatial coherence of the x-ray beam, practical implementation of such systems with tabletop (i.e. non-synchrotron) sources has been limited. One recently developed phase imaging technique employs multiple fine-pitched gratings. However, the strict manufacturing tolerances and precise alignment requirements have limited the widespread adoption of grating-based techniques. In this work, we have investigated a technique recently demonstrated by Bennett et al. that utilizes a single grid of much coarser pitch. Our system consisted of a low power 100 microm spot Mo source, a CCD with 22 microm pixel pitch, and either a focused mammography linear grid or a stainless steel woven mesh. Phase is extracted from a single image by windowing and comparing data localized about harmonics of the grid in the Fourier domain. A Matlab code was written to perform the image processing. For the first time, the effects on the diffraction phase contrast and scattering amplitude images of varying grid types and periods, and of varying the window function type used to separate the harmonics, and the window widths, were investigated. Using the wire mesh, derivatives of the phase along two orthogonal directions were obtained and new methods investigated to form improved phase contrast images.

  14. Image fusion algorithm for differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Roessl, Ewald; Koehler, Thomas; van Stevendaal, Udo; Martens, Gerhard; Hauser, Nik; Wang, Zhentian; Stampanoni, Marco

    2012-03-01

    Differential phase-contrast imaging in the x-ray domain provides three physically complementary signals:1, 2 the attenuation, the differential phase-contrast, related to the refractive index, and the dark-field signal, strongly influenced by the total amount of radiation scattered into very small angles. In medical applications, it is of the utmost importance to present to the radiologist all clinically relevant information in as compact a way as possible. Hence, the need arises for a method to combine two or more of the above mentioned signals into one image containing all information relevant for diagnosis. We present an image composition algorithm that fuses the attenuation image and the differential phase contrast image into a composite, final image based on the assumption that the real and imaginary part of the complex refractive index of the sample can be related by a constant scaling factor. The merging is performed in such a way that the composite image is characterized by minimal noise-power at each frequency component.

  15. Phase contrast imaging with micro focus x-ray tube

    NASA Astrophysics Data System (ADS)

    Shovkun, V. Y.; Kumakhov, M. A.

    2005-07-01

    Now the phase-contrast (PC) radiography with monochromatic synchmtron radiation sources is very promising for use in non-destructive industrial control, medical and biological X-ray imaging. Unfortunately synchrotron sources are rather expensive for laboratory practice. We are developing a phase-contrast imaging with a micro focus X-ray tube. We performed numerical calculations with Fresnel-Kirchhgoff formalism to obtain values of PC-signals taking into account polychromatic nature of X-ray radiation, a finite size of a source, and a finite resolution of a detector including spectral sensitivity of the detector. We conducted experiments with a micro focus X-ray tube to find absolute values of PC signals for some models of biological tissue and technical materials in presence of scattering X-rays that emerge from the object. By means of simple set of the experimental arrangement it is possible to obtain the phase-contrast image map of the boundaries between regions with the density difference of order ~1 g/cm3. Under experimental conditions the minimal detected PC-signal is found for the plastic fiber 45 tm in diameter. Examples ofthe X-ray PC-images of fishes, images of air bubbles and ribs, slag inclusions in joint weld of Al-Li alloy materials, and images of sapphire microspheres for cellular metallic structures are presented.

  16. Phase contrast image segmentation using a Laue analyser crystal

    NASA Astrophysics Data System (ADS)

    Kitchen, Marcus J.; Paganin, David M.; Uesugi, Kentaro; Allison, Beth J.; Lewis, Robert A.; Hooper, Stuart B.; Pavlov, Konstantin M.

    2011-02-01

    Dual-energy x-ray imaging is a powerful tool enabling two-component samples to be separated into their constituent objects from two-dimensional images. Phase contrast x-ray imaging can render the boundaries between media of differing refractive indices visible, despite them having similar attenuation properties; this is important for imaging biological soft tissues. We have used a Laue analyser crystal and a monochromatic x-ray source to combine the benefits of both techniques. The Laue analyser creates two distinct phase contrast images that can be simultaneously acquired on a high-resolution detector. These images can be combined to separate the effects of x-ray phase, absorption and scattering and, using the known complex refractive indices of the sample, to quantitatively segment its component materials. We have successfully validated this phase contrast image segmentation (PCIS) using a two-component phantom, containing an iodinated contrast agent, and have also separated the lungs and ribcage in images of a mouse thorax. Simultaneous image acquisition has enabled us to perform functional segmentation of the mouse thorax throughout the respiratory cycle during mechanical ventilation.

  17. Systolically gated 3D phase contrast MRA of mesenteric arteries in suspected mesenteric ischemia

    SciTech Connect

    Wasser, M.N.; Schultze Kool, L.J.; Roos, A. de

    1996-03-01

    Our goal was to assess the value of MRA for detecting stenoses in the celiac (CA) and superior mesenteric (SMA) arteries in patients suspected of having chronic mesenteric ischemia, using an optimized systolically gated 3D phase contrast technique. In an initial study in 24 patients who underwent conventional angiography of the abdominal vessels for different clinical indications, a 3D phase contrast MRA technique (3D-PCA) was evaluated and optimized to image the CAs and SMAs. Subsequently, a prospective study was performed to assess the value of systolically gated 3D-PCA in evaluation of the mesenteric arteries in 10 patients with signs and symptoms of chronic mesenteric ischemia. Intraarterial digital subtraction angiography and surgical findings were used as the reference standard. In the initial study, systolic gating appeared to be essential in imaging the SMA on 3D-PCA. In 10 patients suspected of mesenteric ischemia, systolically gated 3D-PCA identified significant proximal disease in the two mesenteric vessels in 4 patients. These patients underwent successful reconstruction of their stenotic vessels. Cardiac-gated MRA may become a useful tool in selection of patients suspected of having mesenteric ischemia who may benefit from surgery. 16 refs., 6 figs., 4 tabs.

  18. Model-based pancreas segmentation in portal venous phase contrast-enhanced CT images.

    PubMed

    Hammon, Matthias; Cavallaro, Alexander; Erdt, Marius; Dankerl, Peter; Kirschner, Matthias; Drechsler, Klaus; Wesarg, Stefan; Uder, Michael; Janka, Rolf

    2013-12-01

    This study aims to automatically detect and segment the pancreas in portal venous phase contrast-enhanced computed tomography (CT) images. The institutional review board of the University of Erlangen-Nuremberg approved this study and waived the need for informed consent. Discriminative learning is used to build a pancreas tissue classifier incorporating spatial relationships between the pancreas and surrounding organs and vessels. Furthermore, discrete cosine and wavelet transforms are used to build texture features to describe local tissue appearance. Classification is used to guide a constrained statistical shape model to fit the data. The algorithm to detect and segment the pancreas was evaluated on 40 consecutive CT data that were acquired in the portal venous contrast agent phase. Manual segmentation of the pancreas was carried out by experienced radiologists and served as reference standard. Threefold cross validation was performed. The algorithm-based detection and segmentation yielded an average surface distance of 1.7 mm and an average overlap of 61.2 % compared with the reference standard. The overall runtime of the system was 20.4 min. The presented novel approach enables automatic pancreas segmentation in portal venous phase contrast-enhanced CT images which are included in almost every clinical routine abdominal CT examination. Reliable pancreatic segmentation is crucial for computer-aided detection systems and an organ-specific decision support. PMID:23471751

  19. MO-G-18C-05: Real-Time Prediction in Free-Breathing Perfusion MRI

    SciTech Connect

    Song, H; Liu, W; Ruan, D; Jung, S; Gach, M

    2014-06-15

    Purpose: The aim is to minimize frame-wise difference errors caused by respiratory motion and eliminate the need for breath-holds in magnetic resonance imaging (MRI) sequences with long acquisitions and repeat times (TRs). The technique is being applied to perfusion MRI using arterial spin labeling (ASL). Methods: Respiratory motion prediction (RMP) using navigator echoes was implemented in ASL. A least-square method was used to extract the respiratory motion information from the 1D navigator. A generalized artificial neutral network (ANN) with three layers was developed to simultaneously predict 10 time points forward in time and correct for respiratory motion during MRI acquisition. During the training phase, the parameters of the ANN were optimized to minimize the aggregated prediction error based on acquired navigator data. During realtime prediction, the trained ANN was applied to the most recent estimated displacement trajectory to determine in real-time the amount of spatial Results: The respiratory motion information extracted from the least-square method can accurately represent the navigator profiles, with a normalized chi-square value of 0.037±0.015 across the training phase. During the 60-second training phase, the ANN successfully learned the respiratory motion pattern from the navigator training data. During real-time prediction, the ANN received displacement estimates and predicted the motion in the continuum of a 1.0 s prediction window. The ANN prediction was able to provide corrections for different respiratory states (i.e., inhalation/exhalation) during real-time scanning with a mean absolute error of < 1.8 mm. Conclusion: A new technique enabling free-breathing acquisition during MRI is being developed. A generalized ANN development has demonstrated its efficacy in predicting a continuum of motion profile for volumetric imaging based on navigator inputs. Future work will enhance the robustness of ANN and verify its effectiveness with human

  20. Characterization of free breathing patterns with 5D lung motion model

    SciTech Connect

    Zhao Tianyu; Lu Wei; Yang Deshan; Mutic, Sasa; Noel, Camille E.; Parikh, Parag J.; Bradley, Jeffrey D.; Low, Daniel A.

    2009-11-15

    Purpose: To determine the quiet respiration breathing motion model parameters for lung cancer and nonlung cancer patients. Methods: 49 free breathing patient 4DCT image datasets (25 scans, cine mode) were collected with simultaneous quantitative spirometry. A cross-correlation registration technique was employed to track the lung tissue motion between scans. The registration results were applied to a lung motion model: X-vector=X-vector{sub 0}+{alpha}-vector{beta}-vector f, where X-vector is the position of a piece of tissue located at reference position X-vector{sub 0} during a reference breathing phase (zero tidal volume v, zero airflow f). {alpha}-vector is a parameter that characterizes the motion due to air filling (motion as a function of tidal volume v) and {beta}-vector is the parameter that accounts for the motion due to the imbalance of dynamical stress distributions during inspiration and exhalation that causes lung motion hysteresis (motion as a function of airflow f). The parameters {alpha}-vector and {beta}-vector together provide a quantitative characterization of breathing motion that inherently includes the complex hysteresis interplay. The {alpha}-vector and {beta}-vector distributions were examined for each patient to determine overall general patterns and interpatient pattern variations. Results: For 44 patients, the greatest values of |{alpha}-vector| were observed in the inferior and posterior lungs. For the rest of the patients, |{alpha}-vector| reached its maximum in the anterior lung in three patients and the lateral lung in two patients. The hysteresis motion {beta}-vector had greater variability, but for the majority of patients, |{beta}-vector| was largest in the lateral lungs. Conclusions: This is the first report of the three-dimensional breathing motion model parameters for a large cohort of patients. The model has the potential for noninvasively predicting lung motion. The majority of patients exhibited similar |{alpha}-vector| maps

  1. Accuracy of Image Guidance Using Free-Breathing Cone-Beam Computed Tomography for Stereotactic Lung Radiotherapy

    PubMed Central

    Kamomae, Takeshi; Monzen, Hajime; Nakayama, Shinichi; Mizote, Rika; Oonishi, Yuuichi; Kaneshige, Soichiro; Sakamoto, Takashi

    2015-01-01

    Movement of the target object during cone-beam computed tomography (CBCT) leads to motion blurring artifacts. The accuracy of manual image matching in image-guided radiotherapy depends on the image quality. We aimed to assess the accuracy of target position localization using free-breathing CBCT during stereotactic lung radiotherapy. The Vero4DRT linear accelerator device was used for the examinations. Reference point discrepancies between the MV X-ray beam and the CBCT system were calculated using a phantom device with a centrally mounted steel ball. The precision of manual image matching between the CBCT and the averaged intensity (AI) images restructured from four-dimensional CT (4DCT) was estimated with a respiratory motion phantom, as determined in evaluations by five independent operators. Reference point discrepancies between the MV X-ray beam and the CBCT image-guidance systems, categorized as left-right (LR), anterior-posterior (AP), and superior-inferior (SI), were 0.33 ± 0.09, 0.16 ± 0.07, and 0.05 ± 0.04 mm, respectively. The LR, AP, and SI values for residual errors from manual image matching were -0.03 ± 0.22, 0.07 ± 0.25, and -0.79 ± 0.68 mm, respectively. The accuracy of target position localization using the Vero4DRT system in our center was 1.07 ± 1.23 mm (2 SD). This study experimentally demonstrated the sufficient level of geometric accuracy using the free-breathing CBCT and the image-guidance system mounted on the Vero4DRT. However, the inter-observer variation and systematic localization error of image matching substantially affected the overall geometric accuracy. Therefore, when using the free-breathing CBCT images, careful consideration of image matching is especially important. PMID:25954809

  2. Reconstruction of 4D-CT data sets acquired during free breathing for the analysis of respiratory motion

    NASA Astrophysics Data System (ADS)

    Ehrhardt, Jan; Werner, Rene; Frenzel, Thorsten; Säring, Dennis; Lu, Wei; Low, Daniel; Handels, Heinz

    2006-03-01

    Respiratory motion is a significant source of error in radiotherapy treatment planning. 4D-CT data sets can be useful to measure the impact of organ motion caused by breathing. But modern CT scanners can only scan a limited region of the body simultaneously and patients have to be scanned in segments consisting of multiple slices. For studying free breathing motion multislice CT scans can be collected simultaneously with digital spirometry over several breathing cycles. The 4D data set is assembled by sorting the free breathing multislice CT scans according to the couch position and the tidal volume. But artifacts can occur because there are no data segments for exactly the same tidal volume and all couch positions. We present an optical flow based method for the reconstruction of 4D-CT data sets from multislice CT scans, which are collected simultaneously with digital spirometry. The optical flow between the scans is estimated by a non-linear registration method. The calculated velocity field is used to reconstruct a 4D-CT data set by interpolating data at user-defined tidal volumes. By this technique, artifacts can be reduced significantly. The reconstructed 4D-CT data sets are used for studying inner organ motion during the respiratory cycle. The procedures described were applied to reconstruct 4D-CT data sets for four tumour patients who have been scanned during free breathing. The reconstructed 4D data sets were used to quantify organ displacements and to visualize the abdominothoracic organ motion.

  3. Various clinical application of phase contrast X-ray

    NASA Astrophysics Data System (ADS)

    Oh, Chilhwan; Park, Sangyong; Ha, Seunghan; Park, Gyuman; Lee, Gunwoo; Lee, Onseok; Je, Jungho

    2008-02-01

    In biomedical application study using phase contrast X-ray, both sample thickness or density and absorption difference are very important factors in aspects of contrast enhancement. We present experimental evidence that synchrotron hard X-ray are suitable for radiological imaging of biological samples down to the cellular level. We investigated the potential of refractive index radiology using un-monochromatized synchrotron hard X-rays for the imaging of cell and tissue in various diseases. Material had been adopted various medical field, such as apoE knockout mouse in cardiologic field, specimen from renal and prostatic carcinoma patient in urology, basal cell epithelioma in dermatology, brain tissue from autosy sample of pakinson's disease, artificially induced artilrtis tissue from rabbits and extracted tooth from patients of crack tooth syndrome. Formalin and paraffin fixed tissue blocks were cut in 3 mm thickness for the X-ray radiographic imaging. From adjacent areas, 4 μm thickness sections were also prepared for hematoxylin-eosin staining. Radiographic images of dissected tissues were obtained using the hard X-rays from the 7B2 beamline of the Pohang Light Source (PLS). The technique used for the study was the phase contrast images were compared with the optical microscopic images of corresponding histological slides. Radiographic images of various diseased tissues showed clear histological details of organelles in normal tissues. Most of cancerous lesions were well differentiated from adjacent normal tissues and detailed histological features of each tumor were clearly identified. Also normal microstructures were identifiable by the phase contrast imaging. Tissue in cancer or other disease showed clearly different findings from those of surrounding normal tissue. For the first time we successfully demonstrated that synchrotron hard X-rays can be used for radiological imaging of relatively thick tissue samples with great histological details.

  4. Magnetic field induced differential neutron phase contrast imaging

    SciTech Connect

    Strobl, M.; Treimer, W.; Walter, P.; Keil, S.; Manke, I.

    2007-12-17

    Besides the attenuation of a neutron beam penetrating an object, induced phase changes have been utilized to provide contrast in neutron and x-ray imaging. In analogy to differential phase contrast imaging of bulk samples, the refraction of neutrons by magnetic fields yields image contrast. Here, it will be reported how double crystal setups can provide quantitative tomographic images of magnetic fields. The use of magnetic air prisms adequate to split the neutron spin states enables a distinction of field induced phase shifts and these introduced by interaction with matter.

  5. Development of a synthetic phase contrast imaging diagnostic

    SciTech Connect

    Rost, J. C.; Lin, L.; Porkolab, M.

    2010-06-15

    A ''synthetic diagnostic'' has been developed to calculate the expected experimental response of phase contrast imaging (PCI), a scattering diagnostic used to measure density fluctuations in laboratory plasmas, to a tokamak discharge modeled with the GYRO nonlinear gyrokinetic code [J. Candy and R. Waltz, J. Comput. Phys. 186, 545 (2003)]. The synthetic PCI includes the spatial response of the experimental diagnostic, primarily implemented as a line integral of plasma density along the beam path, and the minimum and maximum wavenumber response resulting from the detection scheme. The synthetic PCI can be used for comparisons between GYRO and experiment as well as studies of the PCI response.

  6. Phase Contrast X-ray Imaging Signatures for Security Applications

    SciTech Connect

    Miller, Erin A.; White, Timothy A.; McDonald, Benjamin S.; Seifert, Allen

    2013-02-01

    Abstract: Differential phase contrast imaging with a grating interferometer is a promising new radiographic technique providing three distinct contrast mechanisms - absorption, phase, and scatter (or dark field) - using a conventional x-ray tube source. We investigate the signatures available in these three contrast mechanisms with attention towards potential security applications. We find that the scatter mode in particular is sensitive to textured materials, enabling lowered detection limits than absorption for materials such as powders. We investigate the length scales to which our imaging system is sensitive.

  7. Phase contrast and operation regimes in multifrequency atomic force microscopy

    SciTech Connect

    Santos, Sergio

    2014-04-07

    In amplitude modulation atomic force microscopy the attractive and the repulsive force regimes induce phase shifts above and below 90°, respectively. In the more recent multifrequency approach, however, multiple operation regimes have been reported and the theory should be revisited. Here, a theory of phase contrast in multifrequency atomic force microscopy is developed and discussed in terms of energy transfer between modes, energy dissipation and the kinetic energy and energy transfer associated with externally driven harmonics. The single frequency virial that controls the phase shift might undergo transitions in sign while the average force (modal virial) remains positive (negative)

  8. Development of a synthetic phase contrast imaging diagnostic

    NASA Astrophysics Data System (ADS)

    Rost, J. C.; Lin, L.; Porkolab, M.

    2010-06-01

    A "synthetic diagnostic" has been developed to calculate the expected experimental response of phase contrast imaging (PCI), a scattering diagnostic used to measure density fluctuations in laboratory plasmas, to a tokamak discharge modeled with the GYRO nonlinear gyrokinetic code [J. Candy and R. Waltz, J. Comput. Phys. 186, 545 (2003)]. The synthetic PCI includes the spatial response of the experimental diagnostic, primarily implemented as a line integral of plasma density along the beam path, and the minimum and maximum wavenumber response resulting from the detection scheme. The synthetic PCI can be used for comparisons between GYRO and experiment as well as studies of the PCI response.

  9. Dynamic Studies of Lung Fluid Clearance with Phase Contrast Imaging

    NASA Astrophysics Data System (ADS)

    Kitchen, Marcus J.; Lewis, Rob A.; Hooper, Stuart B.; Wallace, Megan J.; Siu, Karen K. W.; Williams, Ivan; Irvine, Sarah C.; Morgan, Michael J.; Paganin, David M.; Pavlov, Konstantin; Yagi, Naoto; Uesugi, Kentaro

    2007-01-01

    Clearance of liquid from the airways at birth is a poorly understood process, partly due to the difficulties of observing and measuring the distribution of air within the lung. Imaging dynamic processes within the lung in vivo with high contrast and spatial resolution is therefore a major challenge. However, phase contrast X-ray imaging is able to exploit inhaled air as a contrast agent, rendering the lungs of small animals visible due to the large changes in the refractive index at air/tissue interfaces. In concert with the high spatial resolution afforded by X-ray imaging systems (<100 μm), propagation-based phase contrast imaging is ideal for studying lung development. To this end we have utilized intense, monochromatic synchrotron radiation, together with a fast readout CCD camera, to study fluid clearance from the lungs of rabbit pups at birth. Local rates of fluid clearance have been measured from the dynamic sequences using a single image phase retrieval algorithm.

  10. Optimization of grating-based phase-contrast imaging setup

    NASA Astrophysics Data System (ADS)

    Baturin, Pavlo; Shafer, Mark

    2014-03-01

    Phase contrast imaging (PCI) technology has emerged over the last decade as a novel imaging technique capable of probing phase characteristics of an object as complimentary information to conventional absorption properties. In this work, we identified and provided a rationale for optimization of key parameters that determine the performance of a Talbot-Lau PCI system. The study used the Fresnel wave propagation theory and system geometry to predict optimal grating alignment conditions necessary for producing maximum-phase contrast. The moiré fringe pattern frequency and angular orientation produced in the X-ray detector plane were studied as functions of the gratings' axial rotation. The effect of axial displacement between source-to-phase (L) and phase-to-absorption (d) gratings, on system contrast, was discussed in detail. The L-d regions of highest contrast were identified, and the dependence of contrast on the energy of the X-ray spectrum was also studied. The predictions made in this study were tested experimentally and showed excellent agreement. The results indicated that the PCI system performance is highly sensitive to alignment. The rationale and recommendations made should serve as guidance in design, development, and optimization of Talbot-Lau PCI systems.

  11. A phase contrast interferometer on DIII-D

    SciTech Connect

    Coda, S.; Porkolab, M.; Carlstrom, T.N.

    1992-04-01

    A novel imaging diagnostic has recently become operational on the DIII-D tokamak for the study of density fluctuations at the outer edge of the plasma. The phase contrast imaging approach overcomes the limitations of conventional scattering techniques in the spectral range of interest for transport-related phenomena, by allowing detection of long wavelength modes (up to 7.6 cm) with excellent spatial resolution (5 mm) in the radial direction. Additional motivation for the diagnostic is provided by wave-plasma interactions during heating and current drive experiments in the Ion Cyclotron range of frequencies. Density perturbations of 4 {times} 10{sup 7} cm{sup {minus}3} with a 1 MHz bandwidth can be resolved. The diagnostic employs a 7.6 cm diameter CO{sub 2} laser beam launched vertically across the plasma edge. An image of the plasma is then created on a 16-element detector array: the detector signals are directly proportional to the density fluctuations integrated along each chord. Wavelengths and correlation lengths can be inferred from the spatial mapping. The phase contrast method and its application to DIII-D are described and tests and first plasma data are presented.

  12. Phase-contrast X-ray imaging of breast.

    PubMed

    Keyriläinen, Jani; Bravin, Alberto; Fernández, Manuel; Tenhunen, Mikko; Virkkunen, Pekka; Suortti, Pekka

    2010-10-01

    When an X-ray wave traverses an object, its amplitude and phase change, resulting in attenuation, interference, and refraction, and in phase-contrast X-ray imaging (PCI) these are converted to intensity changes. The relative change of the X-ray phase per unit path length is even orders of magnitude larger than that of the X-ray amplitude, so that the image contrast based on variation of the X-ray phase is potentially much stronger than the contrast based on X-ray amplitude (absorption contrast). An important medical application of PCI methods is soft-tissue imaging, where the absorption contrast is inherently weak. It is shown by in vitro examples that signs of malignant human breast tumor are enhanced in PCI images. Owing to the strong contrast, the radiation dose can be greatly reduced, so that a high-resolution phase-contrast X-ray tomography of the breast is possible with about 1 mGy mean glandular dose. Scattered radiation carries essential information on the atomic and molecular structure of the object, and particularly small-angle X-ray scattering can be used to trace cancer. The imaging methods developed at the synchrotron radiation facilities will become available in the clinical environment with the ongoing development of compact radiation sources, which produce intense X-ray beams of sufficient coherence. Several developments that are under way are described here. PMID:20799921

  13. Breast cancer detection using phase contrast diffuse optical tomography

    NASA Astrophysics Data System (ADS)

    Liang, Xiaoping; Zhang, Qizhi; Li, Changqing; Grobmyer, Stephen R.; Fajardo, Laurie L.; Jiang, Huabei

    2007-02-01

    In this report, a phase-contrast diffuse optical tomography system, which can measure the refractive indices of human breast masses in vivo, is described. To investigate the utility of phase-contrast diffuse optical tomography (PCDOT) for differentiation of malignant and benign breast masses in humans, and to compare PCDOT with conventional diffuse optical tomography (DOT) for analysis of breast masses in humans. 35 breast masses were imaged in 33 patients (mean age = 51 years; range 22-80 years) using PCDOT. Images characterizing the tissue refractive index, absorption and scattering of breast masses were obtained with a finite element-based reconstruction algorithm. The accuracies of absorption and scattering images were compared with images of refractive index in light of the pathology results. Absorption and scattering images were unable to accurately discriminate benign from malignant lesions. Malignant lesions tended to have decreased refractive index allowing them to discriminate from benign lesions in most cases. The sensitivity, specificity, false positive value, and overall accuracy for refractive index were 81.8%, 70.8%, 29.2%, and 74.3%, respectively. Overall we show that benign and malignant breast masses in humans demonstrate different refractive index and differences in refractive index properties can be used to discriminate benign from malignant masses in patients with high accuracy. This opens up a new avenue for improved breast cancer detection using NIR diffusing light.

  14. Dynamic Studies of Lung Fluid Clearance with Phase Contrast Imaging

    SciTech Connect

    Kitchen, Marcus J.; Williams, Ivan; Irvine, Sarah C.; Morgan, Michael J.; Paganin, David M.; Lewis, Rob A.; Pavlov, Konstantin; Hooper, Stuart B.; Wallace, Megan J.; Siu, Karen K. W.; Yagi, Naoto; Uesugi, Kentaro

    2007-01-19

    Clearance of liquid from the airways at birth is a poorly understood process, partly due to the difficulties of observing and measuring the distribution of air within the lung. Imaging dynamic processes within the lung in vivo with high contrast and spatial resolution is therefore a major challenge. However, phase contrast X-ray imaging is able to exploit inhaled air as a contrast agent, rendering the lungs of small animals visible due to the large changes in the refractive index at air/tissue interfaces. In concert with the high spatial resolution afforded by X-ray imaging systems (<100 {mu}m), propagation-based phase contrast imaging is ideal for studying lung development. To this end we have utilized intense, monochromatic synchrotron radiation, together with a fast readout CCD camera, to study fluid clearance from the lungs of rabbit pups at birth. Local rates of fluid clearance have been measured from the dynamic sequences using a single image phase retrieval algorithm.

  15. Free-breathing radial volumetric interpolated breath-hold examination vs breath-hold cartesian volumetric interpolated breath-hold examination magnetic resonance imaging of the liver at 1.5T

    PubMed Central

    Yedururi, Sireesha; Kang, HyunSeon C; Wei, Wei; Wagner-Bartak, Nicolaus A; Marcal, Leonardo P; Stafford, R Jason; Willis, Brandy J; Szklaruk, Janio

    2016-01-01

    AIM To compare breath-hold cartesian volumetric interpolated breath-hold examination (cVIBE) and free-breathing radial VIBE (rVIBE) and determine whether rVIBE could replace cVIBE in routine liver magnetic resonance imaging (MRI). METHODS In this prospective study, 15 consecutive patients scheduled for routine MRI of the abdomen underwent pre- and post-contrast breath-hold cVIBE imaging (19 s acquisition time) and free-breathing rVIBE imaging (111 s acquisition time) on a 1.5T Siemens scanner. Three radiologists with 2, 4, and 8 years post-fellowship experience in abdominal imaging evaluated all images. The radiologists were blinded to the sequence types, which were presented in a random order for each patient. For each sequence, the radiologists scored the cVIBE and rVIBE images for liver edge sharpness, hepatic vessel clarity, presence of artifacts, lesion conspicuity, fat saturation, and overall image quality using a five-point scale. RESULTS Compared to rVIBE, cVIBE yielded significantly (P < 0.001) higher scores for liver edge sharpness (mean score, 3.87 vs 3.37), hepatic-vessel clarity (3.71 vs 3.18), artifacts (3.74 vs 3.06), lesion conspicuity (3.81 vs 3.2), and overall image quality (3.91 vs 3.24). cVIBE and rVIBE did not significantly differ in quality of fat saturation (4.12 vs 4.03, P = 0.17). The inter-observer variability with respect to differences between rVIBE and cVIBE scores was close to zero compared to random error and inter-patient variation. Quality of rVIBE images was rated as acceptable for all parameters. CONCLUSION rVIBE cannot replace cVIBE in routine liver MRI. At 1.5T, free-breathing rVIBE yields acceptable, although slightly inferior image quality compared to breath-hold cVIBE. PMID:27551341

  16. Neural stem cell tracking with phase contrast video microscopy

    NASA Astrophysics Data System (ADS)

    Rigaud, Stéphane U.; Loménie, Nicolas

    2011-03-01

    Tracking and segmenting objects for video surveillance is a well known field of research and very efficient methods exist. Usually embedded in traffic surveillance camera, these processes are not necessary adapted for biological surveillance context. In stem cell study, the design of a framework to monitor cell development in real time improves the stem cell analysis and biological understanding. In this purpose, we propose to test the Σ - ▵ motion filter, normally developed for security and surveillance camera, in order to track neural stem cells and their evolution over time, based on phase contrast image sequences. The motion filter is based on the difference between the current frame and a reference image of the background and uses a recursive spatio-temporal morphological operator called hybrid reconstruction to compensate for ghost and trace usually occurring with those kinds of methods.

  17. Phase contrast imaging of buccal mucosa tissues-Feasibility study

    NASA Astrophysics Data System (ADS)

    Fatima, A.; Tripathi, S.; Shripathi, T.; Kulkarni, V. K.; Banda, N. R.; Agrawal, A. K.; Sarkar, P. S.; Kashyap, Y.; Sinha, A.

    2015-06-01

    Phase Contrast Imaging (PCI) technique has been used to interpret physical parameters obtained from the image taken on the normal buccal mucosa tissue extracted from cheek of a patient. The advantages of this method over the conventional imaging techniques are discussed. PCI technique uses the X-ray phase shift at the edges differentiated by very minute density differences and the edge enhanced high contrast images reveal details of soft tissues. The contrast in the images produced is related to changes in the X-ray refractive index of the tissues resulting in higher clarity compared with conventional absorption based X-ray imaging. The results show that this type of imaging has better ability to visualize microstructures of biological soft tissues with good contrast, which can lead to the diagnosis of lesions at an early stage of the diseases.

  18. Quantitative Phase Contrast Digital Holographic Microscopy in Biophotonics

    NASA Astrophysics Data System (ADS)

    Kemper, Björn; Langehanenberg, Patrik; von Bally, Gert

    2010-11-01

    Label-free, non-contact, non-destructive, on-line (video repetition rate), high resolution, full field (no scanning), quantitative analysis of morphology and dynamic processes in living cells are required features in life science research and medical diagnostics. Digital Holography combined with microscopic imaging provides these features simultaneously. The modular integration of digital holographic microscopy (DHM) into commercial microscopes yields an axial resolution with interferometric resolution while the lateral resolution is diffraction limited. As amplitude and phase are available by numerical reconstruction from a single digital hologram subsequent automated focus correction is enabled. The evaluation of quantitative digital holographic phase contrast images permits also an effective detection of lateral object movements. Thus, 3D tracking is achieved. The applicability of DHM techniques for dynamic live cell analysis is demonstrated by results from tumor cells and human erythrocytes.

  19. Effect of coherence loss in differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Cai, Weixing; Ning, Ruola; Liu, Jiangkun

    2014-03-01

    Coherence property of x-rays is critical in the grating-based differential phase contrast (DPC) imaging because it is the physical foundation that makes any form of phase contrast imaging possible. Loss of coherence is an important experimental issue, which results in increased image noise and reduced object contrast in DPC images and DPC cone beam CT (DPC-CBCT) reconstructions. In this study, experimental results are investigated to characterize the visibility loss (a measurement of coherence loss) in several different applications, including different-sized phantom imaging, specimen imaging and small animal imaging. Key measurements include coherence loss (relative intensity changes in the area of interest in phase-stepping images), contrast and noise level in retrieved DPC images, and contrast and noise level in reconstructed DPC-CBCT images. The influence of size and composition of imaged object (uniform object, bones, skin hairs, tissues, and etc) will be quantified. The same investigation is also applied for moiré pattern-based DPC-CBCT imaging with the same exposure dose. A theoretical model is established to relate coherence loss, noise level in phase stepping images (or moiré images), and the contrast and noise in the retrieved DPC images. Experiment results show that uniform objects lead to a small coherence loss even when the attenuation is higher, while objects with large amount of small structures result in huge coherence loss even when the attenuation is small. The theoretical model predicts the noise level in retrieved DPC images, and it also suggests a minimum dose required for DPC imaging to compensate for coherence loss.

  20. Performance of simultaneous high temporal resolution quantitative perfusion imaging of bladder tumors and conventional multi-phase urography using a novel free-breathing continuously acquired radial compressed-sensing MRI sequence☆,☆☆

    PubMed Central

    Parikh, Nainesh; Ream, Justin M.; Zhang, Hoi Cheung; Block, Kai Tobias; Chandarana, Hersh; Rosenkrantz, Andrew B.

    2016-01-01

    Purpose To investigate the feasibility of high temporal resolution quantitative perfusion imaging of bladder tumors performed simultaneously with conventional multi-phase MR urography (MRU) using a novel free-breathing continuously acquired radial MRI sequence with compressed-sensing reconstruction. Methods: 22 patients with bladder lesions underwent MRU using GRASP (Golden-angle RAdial Sparse Parallel) acquisition. Multi-phase contrast-enhanced abdominopelvic GRASP was performed during free-breathing (1.4 × 1.4 × 3.0 mm3 voxel size; 3:44 min acquisition). Two dynamic datasets were retrospectively reconstructed by combining different numbers of sequentially acquired spokes into each dynamic frame: 110 spokes per frame for 25-s temporal resolution (serving as conventional MRU for clinical interpretation) and 8 spokes per frame for 1.7-s resolution. Using 1.7-s resolution images, ROIs were placed within bladder lesions and normal bladder wall, a femoral artery arterial input function was generated, and the Generalized Kinetic Model was applied. Results Biopsy/cystectomy demonstrated 16 bladder tumors (13 stage ≥ T2, 3 stage ≤ T1) and 6 benign lesions. All lesions were well visualized using 25-s clinical multi-phase images. Using 1.7-s resolution images, Ktrans was significantly higher in tumors (0.38 ± 0.24) than normal bladder (0.12 ± 0.02 = 8, p b 0.001) or benign lesions (0.15 ± 0.04, p = 0.033). Ratio between Ktrans of lesions and normal bladder was nearly double for tumors than benign lesions (4.3 ± 3.4 vs. 2.2 ± 1.6), and Ktrans was nearly double in stage ≥ T2 than stage ≤ T1 tumors (0.44 ± 0.24 vs. 0.24 ± 0.24), although these did not approach significance (p = 0.180–0.209), possibly related to small sample size. Conclusion GRASP allows simultaneous quantitative high temporal resolution perfusion of bladder lesions during clinical MRU examinations using only one contrast injection and without additional scan time. PMID:26740058

  1. High spatial and temporal resolution retrospective cine cardiovascular magnetic resonance from shortened free breathing real-time acquisitions

    PubMed Central

    2013-01-01

    Background Cine cardiovascular magnetic resonance (CMR) is challenging in patients who cannot perform repeated breath holds. Real-time, free-breathing acquisition is an alternative, but image quality is typically inferior. There is a clinical need for techniques that achieve similar image quality to the segmented cine using a free breathing acquisition. Previously, high quality retrospectively gated cine images have been reconstructed from real-time acquisitions using parallel imaging and motion correction. These methods had limited clinical applicability due to lengthy acquisitions and volumetric measurements obtained with such methods have not previously been evaluated systematically. Methods This study introduces a new retrospective reconstruction scheme for real-time cine imaging which aims to shorten the required acquisition. A real-time acquisition of 16-20s per acquired slice was inputted into a retrospective cine reconstruction algorithm, which employed non-rigid registration to remove respiratory motion and SPIRiT non-linear reconstruction with temporal regularization to fill in missing data. The algorithm was used to reconstruct cine loops with high spatial (1.3-1.8 × 1.8-2.1 mm2) and temporal resolution (retrospectively gated, 30 cardiac phases, temporal resolution 34.3 ± 9.1 ms). Validation was performed in 15 healthy volunteers using two different acquisition resolutions (256 × 144/192 × 128 matrix sizes). For each subject, 9 to 12 short axis and 3 long axis slices were imaged with both segmented and real-time acquisitions. The retrospectively reconstructed real-time cine images were compared to a traditional segmented breath-held acquisition in terms of image quality scores. Image quality scoring was performed by two experts using a scale between 1 and 5 (poor to good). For every subject, LAX and three SAX slices were selected and reviewed in the random order. The reviewers were blinded to the reconstruction approach and

  2. Imaging of cardiac perfusion of free-breathing small animals using dynamic phase-correlated micro-CT

    SciTech Connect

    Sawall, Stefan; Kuntz, Jan; Socher, Michaela; Knaup, Michael; Hess, Andreas; Bartling, Soenke; Kachelriess, Marc

    2012-12-15

    Purpose:Mouse models of cardiac diseases have proven to be a valuable tool in preclinical research. The high cardiac and respiratory rates of free breathing mice prohibit conventional in vivo cardiac perfusion studies using computed tomography even if gating methods are applied. This makes a sacrification of the animals unavoidable and only allows for the application of ex vivo methods. Methods: To overcome this issue the authors propose a low dose scan protocol and an associated reconstruction algorithm that allows for in vivo imaging of cardiac perfusion and associated processes that are retrospectively synchronized to the respiratory and cardiac motion of the animal. The scan protocol consists of repetitive injections of contrast media within several consecutive scans while the ECG, respiratory motion, and timestamp of contrast injection are recorded and synchronized to the acquired projections. The iterative reconstruction algorithm employs a six-dimensional edge-preserving filter to provide low-noise, motion artifact-free images of the animal examined using the authors' low dose scan protocol. Results: The reconstructions obtained show that the complete temporal bolus evolution can be visualized and quantified in any desired combination of cardiac and respiratory phase including reperfusion phases. The proposed reconstruction method thereby keeps the administered radiation dose at a minimum and thus reduces metabolic inference to the animal allowing for longitudinal studies. Conclusions: The authors' low dose scan protocol and phase-correlated dynamic reconstruction algorithm allow for an easy and effective way to visualize phase-correlated perfusion processes in routine laboratory studies using free-breathing mice.

  3. Modeling and Analysis of Phase Contrast Imaging Measurements

    NASA Astrophysics Data System (ADS)

    Rost, J. C.; Porkolab, M.; Dorris, J. R.; Candy, J.; Burrell, K. H.

    2007-11-01

    The phase contrast imaging (PCI) diagnostic on DIII-D has been operated in several configurations over its lifetime. The beam path was changed in 2003 from tangential at the midplane LCFS to a path passing through the edge at an angle near 45 degrees and reaching typically r/a=0.8, and the maximum wavenumber has been increased from 7 to 30 cm-1. A synthetic diagnostic (SD) has been created to model all configurations of the PCI by post-processing the output of the GYRO gyrokinetic simulation. The SD includes line integration along the full path and models the detector to obtain the high- and low-k cutoffs. Modeling of a plasma discharge typical of DIII-D is used to interpret the PCI spectra S(k,f) in terms of turbulent ballooning modes and local S(kr,kθ,f). This allows us to identify parts of the PCI spectra with different plasma modes (ITG, TEM, ETG), separate effects of Doppler shift and intrinsic mode velocity in the measurement, and improve comparisons with other diagnostics. The SD will contribute to validation of the model through comparison between simulation and experiment.

  4. Unstained viable cell recognition in phase-contrast microscopy

    NASA Astrophysics Data System (ADS)

    Skoczylas, M.; Rakowski, W.; Cherubini, R.; Gerardi, S.

    2011-09-01

    Individual cell recognition is a relevant task to be accomplished when single-ion microbeam irradiations are performed. At INFN-LNL facility cell visualization system is based on a phase-contrast optical microscope, without the use of any cell dye. Unstained cells are seeded in the special designed Petri dish, between two mylar foils, and at present the cell recognition is achieved manually by an expert operator. Nevertheless, this procedure is time consuming and sometimes it could be not practical if the amount of living cells to be irradiated is large. To reduce the time needed to recognize unstained cells on the Petri dish, it has been designed and implemented an automated, parallel algorithm. Overlapping ROIs sliding in steps over the captured grayscale image are firstly pre-classified and potential cell markers for the segmentation are obtained. Segmented objects are additionally classified to categorize cell bodies from other structures considered as sample dirt or background. As a result, cell coordinates are passed to the dedicated CELLView program that controls all the LNL single-ion microbeam irradiation protocol, including the positioning of individual cells in front of the ion beam. Unstained cell recognition system was successfully tested in experimental conditions with two different mylar surfaces. The recognition time and accuracy was acceptable, however, improvements in speed would be useful.

  5. Demonstration of synchrotron x-ray phase contrast imaging computed tomography of infiltrative transitional cell carcinoma of the prostatic urethra in a dog.

    PubMed

    Montgomery, James E; Wesolowski, Michal J; Wolkowski, Bailey; Chibbar, Rajni; Snead, Elisabeth C R; Singh, Jaswant; Pettitt, Murray; Malhi, Pritpal S; Barboza, Trinita; Adams, Gregg

    2016-01-01

    Prostatic urethral transitional cell carcinoma with prostatic invasion in a dog was imaged with abdominal radiography and abdominal ultrasonography antemortem. Synchrotron in-line x-ray phase contrast imaging computed tomography (XPCI-CT) was performed on the prostate ex vivo at the Canadian Light Source Synchrotron and compared to histology. XPCI-CT imaging provides greater soft tissue contrast than conventional absorption-based x-ray imaging modalities, permitting visualization of regions of inflammatory cell infiltration, differentiation of invasive versus noninvasive tumor regions, and areas of necrosis and mineralization. This represents the first report of XPCI-CT images of an invasive prostatic urothelial neoplasm in a dog. PMID:27014719

  6. Adequacy of inhale/exhale breathhold CT based ITV margins and image-guided registration for free-breathing pancreas and liver SBRT

    PubMed Central

    2014-01-01

    Purpose To evaluate use of breath-hold CTs and implanted fiducials for definition of the internal target volume (ITV) margin for upper abdominal stereotactic body radiation therapy (SBRT). To study the statistics of inter- and intra-fractional motion information. Methods and materials 11 patients treated with SBRT for locally advanced pancreatic cancer (LAPC) or liver cancer were included in the study. Patients underwent fiducial implantation, free-breathing CT and breath-hold CTs at end inhalation/exhalation. All patients were planned and treated with SBRT using volumetric modulated arc therapy (VMAT). Two margin strategies were studied: Strategy I uses PTV = ITV + 3 mm; Strategy II uses PTV = GTV + 1.5 cm. Both CBCT and kV orthogonal images were taken and analyzed for setup before patient treatments. Tumor motion statistics based on skeletal registration and on fiducial registration were analyzed by fitting to Gaussian functions. Results All 11 patients met SBRT planning dose constraints using strategy I. Average ITV margins for the 11 patients were 2 mm RL, 6 mm AP, and 6 mm SI. Skeletal registration resulted in high probability (RL = 69%, AP = 4.6%, SI = 39%) that part of the tumor will be outside the ITV. With the 3 mm ITV expansion (Strategy 1), the probability reduced to RL 32%, AP 0.3%, SI 20% for skeletal registration; and RL 1.2%, AP 0%, SI 7% for fiducial registration. All 7 pancreatic patients and 2 liver patients failed to meet SBRT dose constraints using strategy II. The liver dose was increased by 36% for the other 2 liver patients that met the SBRT dose constraints with strategy II. Conclusions Image guidance matching to skeletal anatomy is inadequate for SBRT positioning in the upper abdomen and usage of fiducials is highly recommended. Even with fiducial implantation and definition of an ITV, a minimal 3 mm planning margin around the ITV is needed to accommodate intra-fractional uncertainties. PMID:24401365

  7. MR phase-contrast imaging in pulmonary hypertension.

    PubMed

    Reiter, Ursula; Reiter, Gert; Fuchsjäger, Michael

    2016-07-01

    Pulmonary hypertension (PH) is a life-threatening, multifactorial pathophysiological haemodynamic condition, diagnosed when the mean pulmonary arterial pressure equals or exceeds 25 mmHg at rest during right heart catheterization. Cardiac MRI, in general, and MR phase-contrast (PC) imaging, in particular, have emerged as potential techniques for the standardized assessment of cardiovascular function, morphology and haemodynamics in PH. Allowing the quantification and characterization of macroscopic cardiovascular blood flow, MR PC imaging offers non-invasive evaluation of haemodynamic alterations associated with PH. Techniques used to study the PH include both the routine two-dimensional (2D) approach measuring predominant velocities through an acquisition plane and the rapidly evolving four-dimensional (4D) PC imaging, which enables the assessment of the complete time-resolved, three-directional blood-flow velocity field in a volume. Numerous parameters such as pulmonary arterial mean velocity, vessel distensibility, flow acceleration time and volume and tricuspid regurgitation peak velocity, as well as the duration and onset of vortical blood flow in the main pulmonary artery, have been explored to either diagnose PH or find non-invasive correlates to right heart catheter parameters. Furthermore, PC imaging-based analysis of pulmonary arterial pulse-wave velocities, wall shear stress and kinetic energy losses grants novel insights into cardiopulmonary remodelling in PH. This review aimed to outline the current applications of 2D and 4D PC imaging in PH and show why this technique has the potential to contribute significantly to early diagnosis and characterization of PH. PMID:26942293

  8. Chemical Shift Induced Phase Errors in Phase Contrast MRI

    PubMed Central

    Middione, Matthew J.; Ennis, Daniel B.

    2012-01-01

    Phase contrast magnetic resonance imaging (PC-MRI) is subject to numerous sources of error, which decrease clinical confidence in the reported measures. This work outlines how stationary perivascular fat can impart a significant chemical shift induced PC-MRI measurement error using computational simulations, in vitro, and in vivo experiments. This chemical shift error does not subtract in phase difference processing, but can be minimized with proper parameter selection. The chemical shift induced phase errors largely depend on both the receiver bandwidth (BW) and the TE. Both theory and an in vivo comparison of the maximum difference in net forward flow between vessels with and without perivascular fat indicated that the effects of chemically shifted perivascular fat are minimized by the use of high BW (814 Hz/px) and an in-phase TE (HBW-TEIN). In healthy volunteers (N=10) HBW-TEIN significantly improves intrapatient net forward flow agreement compared to low BW (401 Hz/px) and a mid-phase TE as indicated by significantly decreased measurement biases and limits of agreement for the ascending aorta (1.8±0.5 mL vs. 6.4±2.8 mL, P=0.01), main pulmonary artery (2.0±0.9 mL vs. 11.9±5.8 mL, P=0.04), the left pulmonary artery (1.3±0.9 mL vs. 5.4±2.5 mL, P=0.003), and all vessels (1.7±0.8 mL vs. 7.2±4.4 mL, P=0.001). PMID:22488490

  9. Quantitative volumetric breast density estimation using phase contrast mammography

    NASA Astrophysics Data System (ADS)

    Wang, Zhentian; Hauser, Nik; Kubik-Huch, Rahel A.; D'Isidoro, Fabio; Stampanoni, Marco

    2015-05-01

    Phase contrast mammography using a grating interferometer is an emerging technology for breast imaging. It provides complementary information to the conventional absorption-based methods. Additional diagnostic values could be further obtained by retrieving quantitative information from the three physical signals (absorption, differential phase and small-angle scattering) yielded simultaneously. We report a non-parametric quantitative volumetric breast density estimation method by exploiting the ratio (dubbed the R value) of the absorption signal to the small-angle scattering signal. The R value is used to determine breast composition and the volumetric breast density (VBD) of the whole breast is obtained analytically by deducing the relationship between the R value and the pixel-wise breast density. The proposed method is tested by a phantom study and a group of 27 mastectomy samples. In the clinical evaluation, the estimated VBD values from both cranio-caudal (CC) and anterior-posterior (AP) views are compared with the ACR scores given by radiologists to the pre-surgical mammograms. The results show that the estimated VBD results using the proposed method are consistent with the pre-surgical ACR scores, indicating the effectiveness of this method in breast density estimation. A positive correlation is found between the estimated VBD and the diagnostic ACR score for both the CC view (p=0.033 ) and AP view (p=0.001 ). A linear regression between the results of the CC view and AP view showed a correlation coefficient γ = 0.77, which indicates the robustness of the proposed method and the quantitative character of the additional information obtained with our approach.

  10. [An Examination of Variable Image Positions in the Aortic Valve Blood Flow Using Phase Contrast MRI: Effect of Breath-holding Methods in Healthy Volunteers].

    PubMed

    Nakagawa, Kenichi; Morimoto, Noriyoshi; Fukushima, Sachi

    2015-12-01

    Phase contrast MRI (PC-MRI) is a useful tool for evaluating valvular pathology. In addition, PC-MRI can provide a noninvasive assessment of blood flow in an arbitrary cross section. However, the blood flow measurement with breath-hold or free breath PC-MRI may be different from each other because of intrathoracic pressure changing and variable image position. The aim of this study was to find both the optimal breath-hold technique and the image position. Quantitative flow images were acquired in four planes (ascending aorta: Ao, sino-tubular junction: STJ, valsalva sinus: valsalva, left ventricular outflow tract: LVOT), in healthy subjects (n=10). The study protocol was divided into two parts: (1) stroke volume (SV) measured in each slice positions by using inspiration, expiration, and navigation method during normal breathing and (2) SV measured at each breath-hold techniques in the Ao, STJ, valsalva, and LVOT. As a result, (1) SV of the respective measurement positions were not significant by using inspiration, expiration, and navigation method and (2) LVOT SV was significantly lower than Ao, STJ, and valsalva. PMID:26685835

  11. Dosimetric impact of motion in free-breathing and gated lung radiotherapy: A 4D Monte Carlo study of intrafraction and interfraction effects

    PubMed Central

    Seco, Joao; Sharp, Greg C.; Wu, Ziji; Gierga, David; Buettner, Florian; Paganetti, Harald

    2008-01-01

    The purpose of this study was to investigate if interfraction and intrafraction motion in free-breathing and gated lung IMRT can lead to systematic dose differences between 3DCT and 4DCT. Dosimetric effects were studied considering the breathing pattern of three patients monitored during the course of their treatment and an in-house developed 4D Monte Carlo framework. Imaging data were taken in free-breathing and in cine mode for both 3D and 4D acquisition. Treatment planning for IMRT delivery was done based on the free-breathing data with the corvus (North American Scientific, Chatsworth, CA) planning system. The dose distributions as a function of phase in the breathing cycle were combined using deformable image registration. The study focused on (a) assessing the accuracy of the corvus pencil beam algorithm with Monte Carlo dose calculation in the lung, (b) evaluating the dosimetric effect of motion on the individual breathing phases of the respiratory cycle, and (c) assessing intrafraction and interfraction motion effects during free-breathing or gated radiotherapy. The comparison between (a) the planning system and the Monte Carlo system shows that the pencil beam algorithm underestimates the dose in low-density regions, such as lung tissue, and overestimates the dose in high-density regions, such as bone, by 5% or more of the prescribed dose (corresponding to approximately 3–5 Gy for the cases considered). For the patients studied this could have a significant impact on the dose volume histograms for the target structures depending on the margin added to the clinical target volume (CTV) to produce either the planning target (PTV) or internal target volume (ITV). The dose differences between (b) phases in the breathing cycle and the free-breathing case were shown to be negligible for all phases except for the inhale phase, where an underdosage of the tumor by as much as 9.3 Gy relative to the free-breathing was observed. The large difference was due to

  12. The lamina splendens of articular cartilage is an artefact of phase contrast microscopy.

    PubMed

    Aspden, R M; Hukins, D W

    1979-11-30

    The so-called lamina splendens of articular cartilage is shown to be a characteristic of phase contrast microscopy; this technique provides no evidence for an anatomically distinct surface layer. Fresnel diffraction occurs at edges separating regions of different refractive indices. These diffraction effects, when viewed under phase contrast, lead to the appearance of a bright line along the edge. PMID:42065

  13. Phase contrast portal imaging for image-guided microbeam radiation therapy

    NASA Astrophysics Data System (ADS)

    Umetani, Keiji; Kondoh, Takeshi

    2014-03-01

    High-dose synchrotron microbeam radiation therapy is a unique treatment technique used to destroy tumors without severely affecting circumjacent healthy tissue. We applied a phase contrast technique to portal imaging in preclinical microbeam radiation therapy experiments. Phase contrast portal imaging is expected to enable us to obtain higherresolution X-ray images at therapeutic X-ray energies compared to conventional portal imaging. Frontal view images of a mouse head sample were acquired in propagation-based phase contrast imaging. The phase contrast images depicted edge-enhanced fine structures of the parietal bones surrounding the cerebrum. The phase contrast technique is expected to be effective in bony-landmark-based verification for image-guided radiation therapy.

  14. Lung Motion Model Validation Experiments, Free-Breathing Tissue Densitometry, and Ventilation Mapping using Fast Helical CT Imaging

    NASA Astrophysics Data System (ADS)

    Dou, Hsiang-Tai

    The uncertainties due to respiratory motion present significant challenges to accurate characterization of cancerous tissues both in terms of imaging and treatment. Currently available clinical lung imaging techniques are subject to inferior image quality and incorrect motion estimation, with consequences that can systematically impact the downstream treatment delivery and outcome. The main objective of this thesis is the development of the techniques of fast helical computed tomography (CT) imaging and deformable image registration for the radiotherapy applications in accurate breathing motion modeling, lung tissue density modeling and ventilation imaging. Fast helical CT scanning was performed on 64-slice CT scanner using the shortest available gantry rotation time and largest pitch value such that scanning of the thorax region amounts to just two seconds, which is less than typical breathing cycle in humans. The scanning was conducted under free breathing condition. Any portion of the lung anatomy undergoing such scanning protocol would be irradiated for only a quarter second, effectively removing any motion induced image artifacts. The resulting CT data were pristine volumetric images that record the lung tissue position and density in a fraction of the breathing cycle. Following our developed protocol, multiple fast helical CT scans were acquired to sample the tissue positions in different breathing states. To measure the tissue displacement, deformable image registration was performed that registers the non-reference images to the reference one. In modeling breathing motion, external breathing surrogate signal was recorded synchronously with the CT image slices. This allowed for the tissue-specific displacement to be modeled as parametrization of the recorded breathing signal using the 5D lung motion model. To assess the accuracy of the motion model in describing tissue position change, the model was used to simulate the original high-pitch helical CT scan

  15. Lung Motion Model Validation Experiments, Free-Breathing Tissue Densitometry, and Ventilation Mapping using Fast Helical CT Imaging

    NASA Astrophysics Data System (ADS)

    Dou, Hsiang-Tai

    The uncertainties due to respiratory motion present significant challenges to accurate characterization of cancerous tissues both in terms of imaging and treatment. Currently available clinical lung imaging techniques are subject to inferior image quality and incorrect motion estimation, with consequences that can systematically impact the downstream treatment delivery and outcome. The main objective of this thesis is the development of the techniques of fast helical computed tomography (CT) imaging and deformable image registration for the radiotherapy applications in accurate breathing motion modeling, lung tissue density modeling and ventilation imaging. Fast helical CT scanning was performed on 64-slice CT scanner using the shortest available gantry rotation time and largest pitch value such that scanning of the thorax region amounts to just two seconds, which is less than typical breathing cycle in humans. The scanning was conducted under free breathing condition. Any portion of the lung anatomy undergoing such scanning protocol would be irradiated for only a quarter second, effectively removing any motion induced image artifacts. The resulting CT data were pristine volumetric images that record the lung tissue position and density in a fraction of the breathing cycle. Following our developed protocol, multiple fast helical CT scans were acquired to sample the tissue positions in different breathing states. To measure the tissue displacement, deformable image registration was performed that registers the non-reference images to the reference one. In modeling breathing motion, external breathing surrogate signal was recorded synchronously with the CT image slices. This allowed for the tissue-specific displacement to be modeled as parametrization of the recorded breathing signal using the 5D lung motion model. To assess the accuracy of the motion model in describing tissue position change, the model was used to simulate the original high-pitch helical CT scan

  16. In-line phase-contrast and grating-based phase-contrast synchrotron imaging study of brain micrometastasis of breast cancer

    NASA Astrophysics Data System (ADS)

    Huang, Sheng; Kou, Binquan; Chi, Yayun; Xi, Yan; Cao, Yixin; Cui, Wenli; Hu, Xin; Shao, Zhimin; Guo, Han; Fu, Yanan; Xiao, Tiqiao; Sun, Jianqi; Zhao, Jun; Wang, Yujie; Wu, Jiong

    2015-03-01

    Current bio-medical imaging researches aim to detect brain micrometastasis in early stage for its increasing incidence and high mortality rates. Synchrotron phase-contrast imaging techniques, such as in-line phase-contrast (IPC) and grating-based phase-contrast (GPC) imaging, could provide a high spatial and density imaging study of biological specimens' 3D structures. In this study, we demonstrated the detection efficiencies of these two imaging tools on breast cancer micrometastasis in an ex vivo mouse brain. We found that both IPC and GPC can differentiate abnormal brain structures induced by micrometastasis from the surrounding normal tissues. We also found that GPC was more sensitive in detecting the small metastasis as compared to IPC.

  17. TH-C-18A-11: Investigating the Minimum Scan Parameters Required to Generate Free-Breathing Fast-Helical CT Scans Without Motion-Artifacts

    SciTech Connect

    Thomas, D; Neylon, J; Dou, T; Jani, S; Lamb, J; Low, D; Tan, J

    2014-06-15

    Purpose: A recently proposed 4D-CT protocol uses deformable registration of free-breathing fast-helical CT scans to generate a breathing motion model. In order to allow accurate registration, free-breathing images are required to be free of doubling-artifacts, which arise when tissue motion is greater than scan speed. This work identifies the minimum scanner parameters required to successfully generate free-breathing fast-helical scans without doubling-artifacts. Methods: 10 patients were imaged under free breathing conditions 25 times in alternating directions with a 64-slice CT scanner using a low dose fast helical protocol. A high temporal resolution (0.1s) 4D-CT was generated using a patient specific motion model and patient breathing waveforms, and used as the input for a scanner simulation. Forward projections were calculated using helical cone-beam geometry (800 projections per rotation) and a GPU accelerated reconstruction algorithm was implemented. Various CT scanner detector widths and rotation times were simulated, and verified using a motion phantom. Doubling-artifacts were quantified in patient images using structural similarity maps to determine the similarity between axial slices. Results: Increasing amounts of doubling-artifacts were observed with increasing rotation times > 0.2s for 16×1mm slice scan geometry. No significant increase in doubling artifacts was observed for 64×1mm slice scan geometry up to 1.0s rotation time although blurring artifacts were observed >0.6s. Using a 16×1mm slice scan geometry, a rotation time of less than 0.3s (53mm/s scan speed) would be required to produce images of similar quality to a 64×1mm slice scan geometry. Conclusion: The current generation of 16 slice CT scanners, which are present in most Radiation Oncology departments, are not capable of generating free-breathing sorting-artifact-free images in the majority of patients. The next generation of CT scanners should be capable of at least 53mm/s scan speed

  18. Single-shot x-ray phase contrast imaging with an algorithmic approach using spectral detection

    NASA Astrophysics Data System (ADS)

    Das, Mini; Park, Chan-Soo; Fredette, Nathaniel R.

    2016-04-01

    X-ray phase contrast imaging has been investigated during the last two decades for potential benefits in soft tissue imaging. Long imaging time, high radiation dose and general measurement complexity involving motion of x-ray optical components have prevented the clinical translation of these methods. In all existing popular phase contrast imaging methods, multiple measurements per projection angle involving motion of optical components are required to achieve quantitatively accurate estimation of absorption, phase and differential phase. Recently we proposed an algorithmic approach to use spectral detection data in a phase contrast imaging setup to obtain absorption, phase and differential phase in a single-step. Our generic approach has been shown via simulations in all three types of phase contrast imaging: propagation, coded aperture and grating interferometry. While other groups have used spectral detector in phase contrast imaging setups, our proposed method is unique in outlining an approach to use this spectral data to simplify phase contrast imaging. In this abstract we show the first experimental proof of our single-shot phase retrieval using a Medipix3 photon counting detector in an edge illumination aperture (also referred to as coded aperture) phase contrast set up as well as for a free space propagation setup. Our preliminary results validate our new transport equation for edge illumination PCI and our spectral phase retrieval algorithm for both PCI methods being investigated. Comparison with simulations also point to excellent performance of Medipix3 built-in charge sharing correction mechanism.

  19. Evaluation of edge effect due to phase contrast imaging for mammography

    SciTech Connect

    Matsuo, Satoru; Katafuchi, Tetsuro; Tohyama, Keiko; Morishita, Junji; Yamada, Katsuhiko; Fujita, Hiroshi

    2005-08-15

    It is well-known that the edge effect produced by phase contrast imaging results in the edge enhancement of x-ray images and thereby sharpens those images. It has recently been reported that phase contrast imaging using practical x-ray tubes with small focal spots has improved image sharpness as observed in the phase contrast imaging with x-ray from synchrotron radiation or micro-focus x-ray tubes. In this study, we conducted the phase contrast imaging of a plastic fiber and plant seeds using a customized mammography equipment with a 0.1 mm focal spot, and the improvement of image sharpness was evaluated in terms of spatial frequency response of the images. We observed that the image contrast of the plastic fiber was increased by edge enhancement, and, as predicted elsewhere, spectral analysis revealed that as the spatial frequencies of the x-ray images increased, so did the sharpness gained through phase contrast imaging. Thus, phase contrast imaging using a practical molybdenum anode tube with a 0.1 mm-focal spot would benefit mammography, in which the morphological detectability of small species such as micro-calcifications is of great concern. And detectability of tumor-surrounded glandular tissues in dense breast would be also improved by the phase contrast imaging.

  20. Abdominal Adhesions

    MedlinePlus

    ... Abdominal Adhesions 1 Ward BC, Panitch A. Abdominal adhesions: current and novel therapies. Journal of Surgical Research. 2011;165(1):91– ... are abdominal adhesions and intestinal obstructions ... generally do not require treatment. Surgery is the only way to treat abdominal ...

  1. Grating-based x-ray phase-contrast imaging at PETRA III

    NASA Astrophysics Data System (ADS)

    Hipp, A.; Beckmann, F.; Lytaev, P.; Greving, I.; Lottermoser, L.; Dose, T.; Kirchhof, R.; Burmester, H.; Schreyer, A.; Herzen, J.

    2014-09-01

    Conventional absorption-based imaging often lacks in good contrast at special applications like visualization of soft tissue or weak absorbing material in general. To overcome this limitation, several new X-ray phase-contrast imaging methods have been developed at synchrotron radiation facilities. Our aim was to establish the possibility of different phase-contrast imaging modalities at the Imaging Beamline (IBL, P05) and the High Energy Material Science beamline (HEMS, P07) at Petra III (DESY, Germany). Here we present the instrumentation and the status of the currently successfully established phase-contrast imaging techniques. First results from measurements of biomedical samples will be presented as demonstration.

  2. Grating-based X-ray phase contrast for biomedical imaging applications.

    PubMed

    Pfeiffer, Franz; Herzen, Julia; Willner, Marian; Chabior, Michael; Auweter, Sigrid; Reiser, Maximilian; Bamberg, Fabian

    2013-09-01

    In this review article we describe the development of grating-based X-ray phase-contrast imaging, with particular emphasis on potential biomedical applications of the technology. We review the basics of image formation in grating-based phase-contrast and dark-field radiography and present some exemplary multimodal radiography results obtained with laboratory X-ray sources. Furthermore, we discuss the theoretical concepts to extend grating-based multimodal radiography to quantitative transmission, phase-contrast, and dark-field scattering computed tomography. PMID:23453793

  3. Results from the first preclinical CT scanner with grating based phase contrast and a rotating gantry

    NASA Astrophysics Data System (ADS)

    Bech, Martin; Tapfer, Arne; Velroyen, Astrid; Yaroshenko, Andre; Pauwels, Bart; Bruyndonckx, Peter; Liu, Xuan; Sasov, Alexander; Mohr, Jürgen; Walter, Marco; Pfeiffer, Franz

    2012-07-01

    After successful demonstrations of soft-tissue phase-contrast imaging with grating interferometers at synchrotron radiation sources and at laboratory based x-ray tubes, a first preclinical CT scanner with grating based phase contrast imaging modality has been constructed. The rotating gantry is equipped with a three-grating interferometer, a 50 watt tungsten anode source and a Hamamatsu flat panel detector. The total length of the interferometer is 45 cm, and the bed of the scanner is optimized for mice, with a scanning diameter of 35 mm. From one single scan both phase-contrast and standard attenuation based tomography can be attained, providing an overall gain in image contrast.

  4. Results from the first preclinical CT scanner with grating based phase contrast and a rotating gantry

    SciTech Connect

    Bech, Martin; Tapfer, Arne; Velroyen, Astrid; Yaroshenko, Andre; Pauwels, Bart; Bruyndonckx, Peter; Liu Xuan; Sasov, Alexander; Mohr, Juergen; Walter, Marco; Pfeiffer, Franz

    2012-07-31

    After successful demonstrations of soft-tissue phase-contrast imaging with grating interferometers at synchrotron radiation sources and at laboratory based x-ray tubes, a first preclinical CT scanner with grating based phase contrast imaging modality has been constructed. The rotating gantry is equipped with a three-grating interferometer, a 50 watt tungsten anode source and a Hamamatsu flat panel detector. The total length of the interferometer is 45 cm, and the bed of the scanner is optimized for mice, with a scanning diameter of 35 mm. From one single scan both phase-contrast and standard attenuation based tomography can be attained, providing an overall gain in image contrast.

  5. Dosimetric comparison of treatment plans based on free breathing, maximum, and average intensity projection CTs for lung cancer SBRT

    SciTech Connect

    Tian Yuan; Wang Zhiheng; Ge Hong; Zhang Tian; Cai Jing; Kelsey, Christopher; Yoo, David; Yin Fangfang

    2012-05-15

    Purpose: To determine whether there is a CT dataset may be more favorable for planning and dose calculation by comparing dosimetric characteristics between treatment plans calculated using free breathing (FB), maximum and average intensity projection (MIP and AIP, respectively) CTs for lung cancer patients receiving stereotactic body radiation therapy (SBRT). Methods: Twenty lung cancer SBRT patients, treated on a linac with 2.5 mm width multileaf-collimator (MLC), were analyzed retrospectively. Both FB helical and four-dimensional CT scans were acquired for each patient. Internal target volume (ITV) was delineated based on MIP CTs and modified based on both ten-phase datasets and FB CTs. Planning target volume (PTV) was then determined by adding additional setup margin to ITV. The PTVs and beams in the optimized treatment plan based on FB CTs were copied to MIP and AIP CTs, with the same isocenters, MLC patterns and monitor units. Mean effective depth (MED) of beams, and some dosimetric parameters for both PTVs and most important organ at risk (OAR), lung minus PTV, were compared between any two datasets using two-tail paired t test. Results: The MEDs in FB and AIP plans were similar but significantly smaller (Ps < 0.001) than that in MIP plans. Minimum dose, mean dose, dose covering at least 90% and 95% of PTVs in MIP plans were slightly higher than two other plans (Ps < 0.008). The absolute volume of lung minus PTV receiving greater than 5, 10, and 20 Gy in MIP plans were significantly smaller than those in both FB and AIP plans (Ps < 0.008). Conformity index for FB plans showed a small but statistically significantly higher. Conclusions: Dosimetric characteristics of AIP plans are similar to those of FB plans. Slightly better target volume coverage and significantly lower low-dose region ({<=}30 Gy) in lung was observed in MIP plans. The decrease in low-dose region in lung was mainly caused by the change of lung volume contoured on two datasets rather than the

  6. Visualization of neurons in the brain with phase-contrast CT

    NASA Astrophysics Data System (ADS)

    Onodera, Hiroshi; Hoshino, Masato; Takashima, Kenta; Uesugi, Kentaro; Yagi, Naoto

    2012-07-01

    Three-dimensional structural analysis of brain is essential to understand neuronal function and brain pathology. The phase-contrast X-ray imaging technique uses an X-ray interferometer and is an extremely sensitive method to visualize structures with low X-ray absorbance. Since the phase shifts caused by light elements can be detected as interference patterns in spite of nearly zero absorption coefficients, the signal/noise ratio for the phase-contrast images of the brain is expected to be hundreds times higher than that obtained with the conventional X-ray absorption contrast method. With phase-contrast imaging technique, we could visualize brain microstructures and specific types of neurons, such as the pyramidal cells in the hippocampus. Phase-contrast CT is a promising technique for nondestructive visualization of brain and spinal cord.

  7. Quantitative Characterization of Inertial Confinement Fusion Capsules Using Phase Contrast Enhanced X-Ray Imaging

    SciTech Connect

    Kozioziemski, B J; Koch, J A; Barty, A; Martz, H E; Lee, W; Fezzaa, K

    2004-05-07

    Current designs for inertial confinement fusion capsules for the National Ignition Facility (NIF) consist of a solid deuterium-tritium (D-T) fuel layer inside of a copper doped beryllium capsule. Phase contrast enhanced x-ray imaging is shown to render the D-T layer visible inside the Be(Cu) capsule. Phase contrast imaging is experimentally demonstrated for several surrogate capsules and validates computational models. Polyimide and low density divinyl benzene foam capsules were imaged at the Advanced Photon Source synchrotron. The surrogates demonstrate that phase contrast enhanced imaging provides a method to characterize surfaces when absorption imaging cannot be used. Our computational models demonstrate that a rough surface can be accurately reproduced in phase contrast enhanced x-ray images.

  8. A phantom study to characterize the imaging quality of a phase-contrast tomosynthesis prototype

    NASA Astrophysics Data System (ADS)

    Wu, Di; Ghani, Muhammad U.; Miao, Hui; Li, Yuhua; Chen, Wei R.; Wu, Xizeng; Liu, Hong

    2013-02-01

    This research is aimed at studying the advantages of an x-ray phase-contrast tomosynthesis prototype by using phantoms. A prototype system is assembled with a micro-focus x-ray source, a rotating stage and a computed radiography detector mounted on an optical rail. A custom designed bubble wrap phantom is used in experiments. Angular projection images are acquired from -20° to +20° with 2° interval. The in-plane slices are reconstructed. The feature area on the phantom is observed. The prototype system provides an intrinsic way to investigate the potential and imaging quality of a phase-contrast tomosynthesis imaging method. As the result, phase-contrast tomosynthesis imaging method is demonstrated for its advantages in avoiding structure noise and overlapping issues by comparing the results acquired by computed radiography and phase-contrast radiography.

  9. Three-dimensional phase-contrast imaging of single floating cells

    SciTech Connect

    Kobayashi, Hiroaki; Ishimaru, Ichirou; Yasokawa, Toshiki; Ishizaki, Katsumi; Kuriyama, Shigeki; Masaki, Tsutomu; Nakai, Seiji; Takegawa, Kaoru; Tanaka, Naotaka

    2006-12-11

    A three-dimensional phase-contrast imaging technique that does not involve fluorescent labeling has been developed for observing floating cells. In this method, a single floating cell is made to rotate and images are acquired at several orientations of the cell using a phase-contrast microscope. From these two-dimensional phase-contrast images, three-dimensional cross-sectional images are obtained using the conventional computed tomography algorithm. This proposed method enabled successful rotation of a floating cell (a breast cancer cell line) and reconstruction of three-dimensional phase-contrast images. In these reconstructed three-dimensional images, the distribution of cell organelles is obtained and the cell nucleus is clearly distinguishable.

  10. In-line phase-contrast imaging based on Tsinghua Thomson scattering x-ray source.

    PubMed

    Zhang, Zhen; Du, Yingchao; Yan, Lixin; Hua, Jianfei; Yang, Jin; Xiao, Yongshun; Huang, Wenhui; Chen, Huaibi; Tang, Chuanxiang

    2014-08-01

    Thomson scattering x-ray sources can produce ultrashort, energy tunable x-ray pulses characterized by high brightness, quasi-monochromatic, and high spatial coherence, which make it an ideal source for in-line phase-contrast imaging. We demonstrate the capacity of in-line phase-contrast imaging based on Tsinghua Thomson scattering X-ray source. Clear edge enhancement effect has been observed in the experiment. PMID:25173262

  11. Image fusion in x-ray differential phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Haas, W.; Polyanskaya, M.; Bayer, F.; Gödel, K.; Hofmann, H.; Rieger, J.; Ritter, A.; Weber, T.; Wucherer, L.; Durst, J.; Michel, T.; Anton, G.; Hornegger, J.

    2012-02-01

    Phase-contrast imaging is a novel modality in the field of medical X-ray imaging. The pioneer method is the grating-based interferometry which has no special requirements to the X-ray source and object size. Furthermore, it provides three different types of information of an investigated object simultaneously - absorption, differential phase-contrast and dark-field images. Differential phase-contrast and dark-field images represent a completely new information which has not yet been investigated and studied in context of medical imaging. In order to introduce phase-contrast imaging as a new modality into medical environment the resulting information about the object has to be correctly interpreted. The three output images reflect different properties of the same object the main challenge is to combine and visualize these data in such a way that it diminish the information explosion and reduce the complexity of its interpretation. This paper presents an intuitive image fusion approach which allows to operate with grating-based phase-contrast images. It combines information of the three different images and provides a single image. The approach is implemented in a fusion framework which is aimed to support physicians in study and analysis. The framework provides the user with an intuitive graphical user interface allowing to control the fusion process. The example given in this work shows the functionality of the proposed method and the great potential of phase-contrast imaging in medical practice.

  12. Quantitative breast tissue characterization using grating-based x-ray phase-contrast imaging.

    PubMed

    Willner, M; Herzen, J; Grandl, S; Auweter, S; Mayr, D; Hipp, A; Chabior, M; Sarapata, A; Achterhold, K; Zanette, I; Weitkamp, T; Sztrókay, A; Hellerhoff, K; Reiser, M; Pfeiffer, F

    2014-04-01

    X-ray phase-contrast imaging has received growing interest in recent years due to its high capability in visualizing soft tissue. Breast imaging became the focus of particular attention as it is considered the most promising candidate for a first clinical application of this contrast modality. In this study, we investigate quantitative breast tissue characterization using grating-based phase-contrast computed tomography (CT) at conventional polychromatic x-ray sources. Different breast specimens have been scanned at a laboratory phase-contrast imaging setup and were correlated to histopathology. Ascertained tumor types include phylloides tumor, fibroadenoma and infiltrating lobular carcinoma. Identified tissue types comprising adipose, fibroglandular and tumor tissue have been analyzed in terms of phase-contrast Hounsfield units and are compared to high-quality, high-resolution data obtained with monochromatic synchrotron radiation, as well as calculated values based on tabulated tissue properties. The results give a good impression of the method's prospects and limitations for potential tumor detection and the associated demands on such a phase-contrast breast CT system. Furthermore, the evaluated quantitative tissue values serve as a reference for simulations and the design of dedicated phantoms for phase-contrast mammography. PMID:24614413

  13. Quantitative breast tissue characterization using grating-based x-ray phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Willner, M.; Herzen, J.; Grandl, S.; Auweter, S.; Mayr, D.; Hipp, A.; Chabior, M.; Sarapata, A.; Achterhold, K.; Zanette, I.; Weitkamp, T.; Sztrókay, A.; Hellerhoff, K.; Reiser, M.; Pfeiffer, F.

    2014-04-01

    X-ray phase-contrast imaging has received growing interest in recent years due to its high capability in visualizing soft tissue. Breast imaging became the focus of particular attention as it is considered the most promising candidate for a first clinical application of this contrast modality. In this study, we investigate quantitative breast tissue characterization using grating-based phase-contrast computed tomography (CT) at conventional polychromatic x-ray sources. Different breast specimens have been scanned at a laboratory phase-contrast imaging setup and were correlated to histopathology. Ascertained tumor types include phylloides tumor, fibroadenoma and infiltrating lobular carcinoma. Identified tissue types comprising adipose, fibroglandular and tumor tissue have been analyzed in terms of phase-contrast Hounsfield units and are compared to high-quality, high-resolution data obtained with monochromatic synchrotron radiation, as well as calculated values based on tabulated tissue properties. The results give a good impression of the method’s prospects and limitations for potential tumor detection and the associated demands on such a phase-contrast breast CT system. Furthermore, the evaluated quantitative tissue values serve as a reference for simulations and the design of dedicated phantoms for phase-contrast mammography.

  14. A comparative analysis of 3D conformal deep inspiratory–breath hold and free-breathing intensity-modulated radiation therapy for left-sided breast cancer

    SciTech Connect

    Reardon, Kelli A.; Read, Paul W.; Morris, Monica M.; Reardon, Michael A.; Geesey, Constance; Wijesooriya, Krishni

    2013-07-01

    Patients undergoing radiation for left-sided breast cancer have increased rates of coronary artery disease. Free-breathing intensity-modulated radiation therapy (FB-IMRT) and 3-dimensional conformal deep inspiratory–breath hold (3D-DIBH) reduce cardiac irradiation. The purpose of this study is to compare the dose to organs at risk in FB-IMRT vs 3D-DIBH for patients with left-sided breast cancer. Ten patients with left-sided breast cancer had 2 computed tomography scans: free breathing and voluntary DIBH. Optimization of the IMRT plan was performed on the free-breathing scan using 6 noncoplanar tangential beams. The 3D-DIBH plan was optimized on the DIBH scan and used standard tangents. Mean volumes of the heart, the left anterior descending coronary artery (LAD), the total lung, and the right breast receiving 5% to 95% (5% increments) of the prescription dose were calculated. Mean volumes of the heart and the LAD were lower (p<0.05) in 3D-DIBH for volumes receiving 5% to 80% of the prescription dose for the heart and 5% for the LAD. Mean dose to the LAD and heart were lower in 3D-DIBH (p≤0.01). Mean volumes of the total lung were lower in FB-IMRT for dose levels 20% to 75% (p<0.05), but mean dose was not different. Mean volumes of the right breast were not different for any dose; however, mean dose was lower for 3D-DIBH (p = 0.04). 3D-DIBH is an alternative approach to FB-IMRT that provides a clinically equivalent treatment for patients with left-sided breast cancer while sparing organs at risk with increased ease of implementation.

  15. Free-breathing diffusion tensor imaging and tractography of the human heart in healthy volunteers using wavelet-based image fusion.

    PubMed

    Wei, Hongjiang; Viallon, Magalie; Delattre, Benedicte M A; Moulin, Kevin; Yang, Feng; Croisille, Pierre; Zhu, Yuemin

    2015-01-01

    Free-breathing cardiac diffusion tensor imaging (DTI) is a promising but challenging technique for the study of fiber structures of the human heart in vivo. This work proposes a clinically compatible and robust technique to provide three-dimensional (3-D) fiber architecture properties of the human heart. To this end, 10 short-axis slices were acquired across the entire heart using a multiple shifted trigger delay (TD) strategy under free breathing conditions. Interscan motion was first corrected automatically using a nonrigid registration method. Then, two post-processing schemes were optimized and compared: an algorithm based on principal component analysis (PCA) filtering and temporal maximum intensity projection (TMIP), and an algorithm that uses the wavelet-based image fusion (WIF) method. The two methods were applied to the registered diffusion-weighted (DW) images to cope with intrascan motion-induced signal loss. The tensor fields were finally calculated, from which fractional anisotropy (FA), mean diffusivity (MD), and 3-D fiber tracts were derived and compared. The results show that the comparison of the FA values (FA(PCATMIP) = 0.45 ±0.10, FA(WIF) = 0.42 ±0.05, P=0.06) showed no significant difference, while the MD values ( MD(PCATMIP)=0.83 ±0.12×10(-3) mm (2)/s, MD(WIF)=0.74±0.05×10(-3) mm (2)/s, P=0.028) were significantly different. Improved helix angle variations through the myocardium wall reflecting the rotation characteristic of cardiac fibers were observed with WIF. This study demonstrates that the combination of multiple shifted TD acquisitions and dedicated post-processing makes it feasible to retrieve in vivo cardiac tractographies from free-breathing DTI acquisitions. The substantial improvements were observed using the WIF method instead of the previously published PCATMIP technique. PMID:25216480

  16. Abdominal mass

    MedlinePlus

    Several conditions can cause an abdominal mass: Abdominal aortic aneurysm can cause a pulsating mass around the navel. ... This could be a sign of a ruptured aortic aneurysm, which is an emergency condition. Contact your health ...

  17. Abdominal mass

    MedlinePlus

    ... Several conditions can cause an abdominal mass: Abdominal aortic aneurysm can cause a pulsating mass around the navel. ... This could be a sign of a ruptured aortic aneurysm, which is an emergency condition. Contact your health ...

  18. Noise properties of grating-based x-ray phase contrast computed tomography

    SciTech Connect

    Koehler, Thomas; Juergen Engel, Klaus; Roessl, Ewald

    2011-05-15

    Purpose: To investigate the properties of tomographic grating-based phase contrast imaging with respect to its noise power spectrum and the energy dependence of the achievable contrast to noise ratio. Methods: Tomographic simulations of an object with 11 cm diameter constituted of materials of biological interest were conducted at different energies ranging from 25 to 85 keV by using a wave propagation approach. Using a Monte Carlo simulation of the x-ray attenuation within the object, it is verified that the simulated measurement deposits the same dose within the object at each energy. Results: The noise in reconstructed phase contrast computed tomography images shows a maximum at low spatial frequencies. The contrast to noise ratio reaches a maximum around 45 keV for the simulated object. The general dependence of the contrast to noise on the energy appears to be independent of the material. Compared with reconstructed absorption contrast images, the reconstructed phase contrast images show sometimes better, sometimes worse, and sometimes similar contrast to noise, depending on the material and the energy. Conclusions: Phase contrast images provide additional information to the conventional absorption contrast images and might thus be useful for medical applications. However, the observed noise power spectrum in reconstructed phase contrast images implies that the usual trade-off between noise and resolution is less efficient for phase contrast imaging compared with absorption contrast imaging. Therefore, high-resolution imaging is a strength of phase contrast imaging, but low-resolution imaging is not. This might hamper the clinical application of the method, in cases where a low spatial resolution is sufficient for diagnosis.

  19. X-Ray Phase-Contrast CT of a Pancreatic Ductal Adenocarcinoma Mouse Model

    PubMed Central

    Tapfer, Arne; Braren, Rickmer; Bech, Martin; Willner, Marian; Zanette, Irene; Weitkamp, Timm; Trajkovic-Arsic, Marija; Siveke, Jens T.; Settles, Marcus; Aichler, Michaela; Walch, Axel; Pfeiffer, Franz

    2013-01-01

    To explore the potential of grating-based x-ray phase-contrast computed tomography (CT) for preclinical research, a genetically engineered mouse model of pancreatic ductal adenocarcinoma (PDAC) was investigated. One ex-vivo mouse specimen was scanned with different grating-based phase-contrast CT imaging setups covering two different settings: i) high-resolution synchrotron radiation (SR) imaging and ii) dose-reduced imaging using either synchrotron radiation or a conventional x-ray tube source. These experimental settings were chosen to assess the potential of phase-contrast imaging for two different types of application: i) high-performance imaging for virtual microscopy applications and ii) biomedical imaging with increased soft-tissue contrast for in-vivo applications. For validation and as a reference, histological slicing and magnetic resonance imaging (MRI) were performed on the same mouse specimen. For each x-ray imaging setup, attenuation and phase-contrast images were compared visually with regard to contrast in general, and specifically concerning the recognizability of lesions and cancerous tissue. To quantitatively assess contrast, the contrast-to-noise ratios (CNR) of selected regions of interest (ROI) in the attenuation images and the phase images were analyzed and compared. It was found that both for virtual microscopy and for in-vivo applications, there is great potential for phase-contrast imaging: in the SR-based benchmarking data, fine details about tissue composition are accessible in the phase images and the visibility of solid tumor tissue under dose-reduced conditions is markedly superior in the phase images. The present study hence demonstrates improved diagnostic value with phase-contrast CT in a mouse model of a complex endogenous cancer, promoting the use and further development of grating-based phase-contrast CT for biomedical imaging applications. PMID:23536795

  20. Report of improved performance in Talbot–Lau phase-contrast computed tomography

    SciTech Connect

    Weber, Thomas Pelzer, Georg; Rieger, Jens; Ritter, André; Anton, Gisela

    2015-06-15

    Purpose: Many expectations have been raised since the use of conventional x-ray tubes on grating-based x-ray phase-contrast imaging. Despite a reported increase in contrast-to-noise ratio (CNR) in many publications, there is doubt on whether phase-contrast computed tomography (CT) is advantageous in clinical CT scanners in vivo. The aim of this paper is to contribute to this discussion by analyzing the performance of a phase-contrast CT laboratory setup. Methods: A phase-contrast CT performance analysis was done. Projection images of a phantom were recorded, and image slices were reconstructed using standard filtered back projection methods. The resulting image slices were analyzed by determining the CNRs in the attenuation and phase image. These results were compared to analytically calculated expectations according to the already published phase-contrast CT performance analysis by Raupach and Flohr [Med. Phys. 39, 4761–4774 (2012)]. There, a severe mistake was found leading to wrong predictions of the performance of phase-contrast CT. The error was corrected and with the new formulae, the experimentally obtained results matched the analytical calculations. Results: The squared ratios of the phase-contrast CNR and the attenuation CNR obtained in the authors’ experiment are five- to ten-fold higher than predicted by Raupach and Flohr [Med. Phys. 39, 4761–4774 (2012)]. The effective lateral spatial coherence length deduced outnumbers the already optimistic assumption of Raupach and Flohr [Med. Phys. 39, 4761–4774 (2012)] by a factor of 3. Conclusions: The authors’ results indicate that the assumptions made in former performance analyses are pessimistic. The break-even point, when phase-contrast CT outperforms attenuation CT, is within reach even with realistic, nonperfect gratings. Further improvements to state-of-the-art clinical CT scanners, like increasing the spatial resolution, could change the balance in favor of phase-contrast computed tomography

  1. Visualizing Typical Features of Breast Fibroadenomas Using Phase-Contrast CT: An Ex-Vivo Study

    PubMed Central

    Grandl, Susanne; Willner, Marian; Herzen, Julia; Sztrókay-Gaul, Anikó; Mayr, Doris; Auweter, Sigrid D.; Hipp, Alexander; Birnbacher, Lorenz; Marschner, Mathias; Chabior, Michael; Reiser, Maximilian; Pfeiffer, Franz; Bamberg, Fabian; Hellerhoff, Karin

    2014-01-01

    Background Fibroadenoma is the most common benign solid breast lesion type and a very common cause for histologic assessment. To justify a conservative therapy, a highly specific discrimination between fibroadenomas and other breast lesions is crucial. Phase-contrast imaging offers improved soft-tissue contrast and differentiability of fine structures combined with the potential of 3-dimensional imaging. In this study we assessed the potential of grating-based phase-contrast CT imaging for visualizing diagnostically relevant features of fibroadenomas. Materials and Methods Grating-based phase-contrast CT was performed on six ex-vivo formalin-fixed breast specimens containing a fibroadenoma and three samples containing benign changes that resemble fibroadenomas using Talbot Lau interferometry and a polychromatic X-ray source. Phase-contrast and simultaneously acquired absorption-based 3D-datasets were manually matched with corresponding histological slices. The visibility of diagnostically valuable features was assessed in comparison with histology as the gold-standard. Results In all cases, matching of grating-based phase-contrast CT images and histology was successfully completed. Grating-based phase-contrast CT showed greatly improved differentiation of fine structures and provided accurate depiction of strands of fibrous tissue within the fibroadenomas as well as of the diagnostically valuable dilated, branched ductuli of the fibroadenomas. A clear demarcation of tumor boundaries in all cases was provided by phase- but not absorption-contrast CT. Conclusions Pending successful translation of the technology to a clinical setting and considerable reduction of the required dose, the data presented here suggest that grating-based phase-contrast CT may be used as a supplementary non-invasive diagnostic tool in breast diagnostics. Phase-contrast CT may thus contribute to the reduction of false positive findings and reduce the recall and core biopsy rate in population

  2. Image segmentation of nanoscale Zernike phase contrast X-ray computed tomography images

    SciTech Connect

    Kumar, Arjun S.; Mandal, Pratiti; Zhang, Yongjie; Litster, Shawn

    2015-05-14

    Zernike phase contrast is a useful technique for nanoscale X-ray computed tomography (CT) imaging of materials with a low X-ray absorption coefficient. It enhances the image contrast by phase shifting X-ray waves to create changes in amplitude. However, it creates artifacts that hinder the use of traditional image segmentation techniques. We propose an image restoration method that models the X-ray phase contrast optics and the three-dimensional image reconstruction method. We generate artifact-free images through an optimization problem that inverts this model. Though similar approaches have been used for Zernike phase contrast in visible light microscopy, this optimization employs an effective edge detection method tailored to handle Zernike phase contrast artifacts. We characterize this optics-based restoration method by removing the artifacts in and thresholding multiple Zernike phase contrast X-ray CT images to produce segmented results that are consistent with the physical specimens. We quantitatively evaluate and compare our method to other segmentation techniques to demonstrate its high accuracy.

  3. Breast tumor segmentation in high resolution x-ray phase contrast analyzer based computed tomography

    SciTech Connect

    Brun, E.; Grandl, S.; Sztrókay-Gaul, A.; Gasilov, S.; Barbone, G.; Mittone, A.; Coan, P.; Bravin, A.

    2014-11-01

    Purpose: Phase contrast computed tomography has emerged as an imaging method, which is able to outperform present day clinical mammography in breast tumor visualization while maintaining an equivalent average dose. To this day, no segmentation technique takes into account the specificity of the phase contrast signal. In this study, the authors propose a new mathematical framework for human-guided breast tumor segmentation. This method has been applied to high-resolution images of excised human organs, each of several gigabytes. Methods: The authors present a segmentation procedure based on the viscous watershed transform and demonstrate the efficacy of this method on analyzer based phase contrast images. The segmentation of tumors inside two full human breasts is then shown as an example of this procedure’s possible applications. Results: A correct and precise identification of the tumor boundaries was obtained and confirmed by manual contouring performed independently by four experienced radiologists. Conclusions: The authors demonstrate that applying the watershed viscous transform allows them to perform the segmentation of tumors in high-resolution x-ray analyzer based phase contrast breast computed tomography images. Combining the additional information provided by the segmentation procedure with the already high definition of morphological details and tissue boundaries offered by phase contrast imaging techniques, will represent a valuable multistep procedure to be used in future medical diagnostic applications.

  4. Artifact characterization and reduction in scanning X-ray Zernike phase contrast microscopy.

    PubMed

    Vartiainen, Ismo; Holzner, Christian; Mohacsi, Istvan; Karvinen, Petri; Diaz, Ana; Pigino, Gaia; David, Christian

    2015-05-18

    Zernike phase contrast microscopy is a well-established method for imaging specimens with low absorption contrast. It has been successfully implemented in full-field microscopy using visible light and X-rays. In microscopy Cowley's reciprocity principle connects scanning and full-field imaging. Even though the reciprocity in Zernike phase contrast has been discussed by several authors over the past thirty years, only recently it was experimentally verified using scanning X-ray microscopy. In this paper, we investigate the image and contrast formation in scanning Zernike phase contrast microscopy with a particular and detailed focus on the origin of imaging artifacts that are typically associated with Zernike phase contrast. We demonstrate experimentally with X-rays the effect of the phase mask design on the contrast and halo artifacts and present an optimized design of the phase mask with respect to photon efficiency and artifact reduction. Similarly, due to the principle of reciprocity the observations and conclusions of this work have direct applicability to Zernike phase contrast in full-field microscopy as well. PMID:26074579

  5. X-ray phase-contrast imaging of the breast—advances towards clinical implementation

    PubMed Central

    Herzen, J; Willner, M; Grandl, S; Scherer, K; Bamberg, F; Reiser, M F; Pfeiffer, F; Hellerhoff, K

    2014-01-01

    Breast cancer constitutes about one-quarter of all cancers and is the leading cause of cancer death in women. To reduce breast cancer mortality, mammographic screening programmes have been implemented in many Western countries. However, these programmes remain controversial because of the associated radiation exposure and the need for improvement in terms of diagnostic accuracy. Phase-contrast imaging is a new X-ray-based technology that has been shown to provide enhanced soft-tissue contrast and improved visualization of cancerous structures. Furthermore, there is some indication that these improvements of image quality can be maintained at reduced radiation doses. Thus, X-ray phase-contrast mammography may significantly contribute to advancements in early breast cancer diagnosis. Feasibility studies of X-ray phase-contrast breast CT have provided images that allow resolution of the fine structure of tissue that can otherwise only be obtained by histology. This implies that X-ray phase-contrast imaging may also lead to the development of entirely new (micro-) radiological applications. This review provides a brief overview of the physical characteristics of this new technology and describes recent developments towards clinical implementation of X-ray phase-contrast imaging of the breast. PMID:24452106

  6. Optical Fourier techniques for medical image processing and phase contrast imaging.

    PubMed

    Yelleswarapu, Chandra S; Kothapalli, Sri-Rajasekhar; Rao, D V G L N

    2008-04-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy. PMID:18458764

  7. X-ray elastography: Modification of x-ray phase contrast images using ultrasonic radiation pressure

    SciTech Connect

    Hamilton, Theron J.; Bailat, Claude; Rose-Petruck, Christoph; Diebold, Gerald J.; Gehring, Stephan; Laperle, Christopher M.; Wands, Jack

    2009-05-15

    The high resolution characteristic of in-line x-ray phase contrast imaging can be used in conjunction with directed ultrasound to detect small displacements in soft tissue generated by differential acoustic radiation pressure. The imaging method is based on subtraction of two x-ray images, the first image taken with, and the second taken without the presence of ultrasound. The subtraction enhances phase contrast features and, to a large extent, removes absorption contrast so that differential movement of tissues with different acoustic impedances or relative ultrasonic absorption is highlighted in the image. Interfacial features of objects with differing densities are delineated in the image as a result of both the displacement introduced by the ultrasound and the inherent sensitivity of x-ray phase contrast imaging to density variations. Experiments with ex vivo murine tumors and human tumor phantoms point out a diagnostic capability of the method for identifying tumors.

  8. Dynamic measures of regional lung air volume using phase contrast x-ray imaging

    NASA Astrophysics Data System (ADS)

    Kitchen, M. J.; Lewis, R. A.; Morgan, M. J.; Wallace, M. J.; Siew, M. L.; Siu, K. K. W.; Habib, A.; Fouras, A.; Yagi, N.; Uesugi, K.; Hooper, S. B.

    2008-11-01

    Phase contrast x-ray imaging can provide detailed images of lung morphology with sufficient spatial resolution to observe the terminal airways (alveoli). We demonstrate that quantitative functional and anatomical imaging of lung ventilation can be achieved in vivo using two-dimensional phase contrast x-ray images with high contrast and spatial resolution (<100 µm) in near real time. Changes in lung air volume as small as 25 µL were calculated from the images of term and preterm rabbit pup lungs (n = 28) using a single-image phase retrieval algorithm. Comparisons with plethysmography and computed tomography showed that the technique provided an accurate and robust method of measuring total lung air volumes. Furthermore, regional ventilation was measured by partitioning the phase contrast images, which revealed differences in aeration for different ventilation strategies.

  9. Interferometric hard x-ray phase contrast imaging at 204 nm grating period

    SciTech Connect

    Wen Han; Gomella, Andrew A.; Miao, Houxun; Lynch, Susanna K.; Wolfe, Douglas E.; Xiao Xianghui; Liu Chian; Morgan, Nicole

    2013-01-15

    We report on hard x-ray phase contrast imaging experiments using a grating interferometer of approximately 1/10th the grating period achieved in previous studies. We designed the gratings as a staircase array of multilayer stacks which are fabricated in a single thin film deposition process. We performed the experiments at 19 keV x-ray energy and 0.8 {mu}m pixel resolution. The small grating period resulted in clear separation of different diffraction orders and multiple images on the detector. A slitted beam was used to remove overlap of the images from the different diffraction orders. The phase contrast images showed detailed features as small as 10 {mu}m, and demonstrated the feasibility of high resolution x-ray phase contrast imaging with nanometer scale gratings.

  10. Optical Fourier techniques for medical image processing and phase contrast imaging

    PubMed Central

    Yelleswarapu, Chandra S.; Kothapalli, Sri-Rajasekhar; Rao, D.V.G.L.N.

    2008-01-01

    This paper briefly reviews the basics of optical Fourier techniques (OFT) and applications for medical image processing as well as phase contrast imaging of live biological specimens. Enhancement of microcalcifications in a mammogram for early diagnosis of breast cancer is the main focus. Various spatial filtering techniques such as conventional 4f filtering using a spatial mask, photoinduced polarization rotation in photosensitive materials, Fourier holography, and nonlinear transmission characteristics of optical materials are discussed for processing mammograms. We also reviewed how the intensity dependent refractive index can be exploited as a phase filter for phase contrast imaging with a coherent source. This novel approach represents a significant advance in phase contrast microscopy. PMID:18458764

  11. Analytical reconstructions of intensity modulated x-ray phase-contrast imaging of human scale phantoms.

    PubMed

    Włodarczyk, Bartłomiej; Pietrzak, Jakub

    2015-11-01

    This paper presents analytical approach to modeling of a full planar and volumetric acquisition system with image reconstructions originated from partial illumination x-ray phase-contrast imaging at a human scale using graphics processor units. The model is based on x-ray tracing and wave optics methods to develop a numerical framework for predicting the performance of a preclinical phase-contrast imaging system of a human-scaled phantom. In this study, experimental images of simple numerical phantoms and high resolution anthropomorphic phantoms of head and thorax based on non-uniform rational b-spline shapes (NURBS) prove the correctness of the model. Presented results can be used to simulate the performance of partial illumination x-ray phase-contrast imaging system on various preclinical applications. PMID:26600991

  12. Analytical reconstructions of intensity modulated x-ray phase-contrast imaging of human scale phantoms

    PubMed Central

    Włodarczyk, Bartłomiej; Pietrzak, Jakub

    2015-01-01

    This paper presents analytical approach to modeling of a full planar and volumetric acquisition system with image reconstructions originated from partial illumination x-ray phase-contrast imaging at a human scale using graphics processor units. The model is based on x-ray tracing and wave optics methods to develop a numerical framework for predicting the performance of a preclinical phase-contrast imaging system of a human-scaled phantom. In this study, experimental images of simple numerical phantoms and high resolution anthropomorphic phantoms of head and thorax based on non-uniform rational b-spline shapes (NURBS) prove the correctness of the model. Presented results can be used to simulate the performance of partial illumination x-ray phase-contrast imaging system on various preclinical applications. PMID:26600991

  13. Variable multimodal light microscopy with interference contrast and phase contrast; dark or bright field.

    PubMed

    Piper, T; Piper, J

    2014-07-01

    Using the optical methods described, specimens can be observed with modified multimodal light microscopes based on interference contrast combined with phase contrast, dark- or bright-field illumination. Thus, the particular visual information associated with interference and phase contrast, dark- and bright-field illumination is joined in real-time composite images appearing in enhanced clarity and purified from typical artefacts, which are apparent in standard phase contrast and dark-field illumination. In particular, haloing and shade-off are absent or significantly reduced as well as marginal blooming and scattering. The background brightness and thus the range of contrast can be continuously modulated and variable transitions can be achieved between interference contrast and complementary illumination techniques. The methods reported should be of general interest for all disciplines using phase and interference contrast microscopy, especially in biology and medicine, and also in material sciences when implemented in vertical illuminators. PMID:24832212

  14. Fast grating-based X-ray phase-contrast tomosynthesis.

    PubMed

    Xi, Yan; Zhao, Jun

    2013-01-01

    As an imaging technique with low radiation dose and improved contrast, digital x-ray tomosynthesis is widely used in clinical diagnoses. Based on the superior capability of x-ray phase-contrast imaging (PCI) techniques for imaging low density materials, the combination of X-ray tomosynthesis and PCI can potentially provide higher efficiency in the detection of soft tissues. The goal of this work was to develop a fast imaging method for phase-contrast tomosynthesis, called fast grating-based phase-contrast tomosynthesis (GPC-Tomo), which integrates tomosynthesis with a grating-based PCI technique. Following the interlaced phase-stepping (PS) data collection method, which is much faster than conventional PS method, we propose a novel image reconstruction method called inner-focusing (IF) reconstruction for the fast GPC-Tomo. The proposed IF reconstruction method was validated by real experiments and the results suggested its effectiveness in achieving a fast GPC-Tomo. PMID:24110189

  15. Analysis of speckle patterns in phase-contrast images of lung tissue

    NASA Astrophysics Data System (ADS)

    Kitchen, M. J.; Paganin, D.; Lewis, R. A.; Yagi, N.; Uesugi, K.

    2005-08-01

    Propagation-based phase-contrast images of mice lungs have been obtained at the SPring-8 synchrotron research facility. Such images exhibit a speckled intensity pattern that bears a superficial resemblance to alveolar structures. This speckle results from focussing effects as projected air-filled alveoli form aberrated compound refractive lenses. An appropriate phase-retrieval algorithm has been utilized to reconstruct the approximate projected lung tissue thickness from single-phase-contrast mice chest radiographs. The results show projected density variations across the lung, highlighting regions of low density corresponding to air-filled regions. Potentially, this offers a better method than conventional radiography for detecting lung diseases such as fibrosis, emphysema and cancer, though this has yet to be demonstrated. As such, the approach can assist in continuing studies of lung function utilizing propagation-based phase-contrast imaging.

  16. Phase contrast imaging simulation and measurements using polychromatic sources with small source-object distances

    SciTech Connect

    Golosio, Bruno; Carpinelli, Massimo; Masala, Giovanni Luca; Oliva, Piernicola; Stumbo, Simone; Delogu, Pasquale; Zanette, Irene; Stefanini, Arnaldo

    2008-11-01

    Phase contrast imaging is a technique widely used in synchrotron facilities for nondestructive analysis. Such technique can also be implemented through microfocus x-ray tube systems. Recently, a relatively new type of compact, quasimonochromatic x-ray sources based on Compton backscattering has been proposed for phase contrast imaging applications. In order to plan a phase contrast imaging system setup, to evaluate the system performance and to choose the experimental parameters that optimize the image quality, it is important to have reliable software for phase contrast imaging simulation. Several software tools have been developed and tested against experimental measurements at synchrotron facilities devoted to phase contrast imaging. However, many approximations that are valid in such conditions (e.g., large source-object distance, small transverse size of the object, plane wave approximation, monochromatic beam, and Gaussian-shaped source focal spot) are not generally suitable for x-ray tubes and other compact systems. In this work we describe a general method for the simulation of phase contrast imaging using polychromatic sources based on a spherical wave description of the beam and on a double-Gaussian model of the source focal spot, we discuss the validity of some possible approximations, and we test the simulations against experimental measurements using a microfocus x-ray tube on three types of polymers (nylon, poly-ethylene-terephthalate, and poly-methyl-methacrylate) at varying source-object distance. It will be shown that, as long as all experimental conditions are described accurately in the simulations, the described method yields results that are in good agreement with experimental measurements.

  17. Simplified approach for quantitative digital holographic phase contrast imaging of living cells

    NASA Astrophysics Data System (ADS)

    Kemper, Björn; Vollmer, Angelika; Rommel, Christina E.; Schnekenburger, Jürgen; Bally, Gert Von

    2011-02-01

    Many interferometry-based quantitative phase contrast imaging techniques require a separately generated coherent reference wave. This results in a low phase stability and the demand for a precise adjustment of the intensity ratio between object and reference wave. To overcome these problems, the performance of a Michelson interferometer approach for digital holographic microscopy was analyzed that avoids a separately generated reference wave by superposition of different image areas. It is shown that this simplified arrangement yields improved phase stability. Furthermore, results from time-lapse investigations on living pancreas tumor cells demonstrate the capability of the method for reliable quantitative phase contrast imaging.

  18. Heralded phase-contrast imaging using an orbital angular momentum phase-filter

    NASA Astrophysics Data System (ADS)

    Aspden, Reuben S.; Morris, Peter A.; He, Ruiqing; Chen, Qian; Padgett, Miles J.

    2016-05-01

    We utilise the position and orbital angular momentum (OAM) correlations between the signal and idler photons generated in the down-conversion process to obtain ghost images of a phase object. By using an OAM phase filter, which is non-local with respect to the object, the images exhibit isotropic edge-enhancement. This imaging technique is the first demonstration of a full-field, phase-contrast imaging system with non-local edge enhancement, and enables imaging of phase objects using significantly fewer photons than standard phase-contrast imaging techniques.

  19. Phase-contrast enhanced mammography: A new diagnostic tool for breast imaging

    SciTech Connect

    Wang Zhentian; Thuering, Thomas; David, Christian; Roessl, Ewald; Trippel, Mafalda; Kubik-Huch, Rahel A.; Singer, Gad; Hohl, Michael K.; Hauser, Nik; Stampanoni, Marco

    2012-07-31

    Phase contrast and scattering-based X-ray imaging can potentially revolutionize the radiological approach to breast imaging by providing additional and complementary information to conventional, absorption-based methods. We investigated native, non-fixed whole breast samples using a grating interferometer with an X-ray tube-based configuration. Our approach simultaneously recorded absorption, differential phase contrast and small-angle scattering signals. The results show that this novel technique - combined with a dedicated image fusion algorithm - has the potential to deliver enhanced breast imaging with complementary information for an improved diagnostic process.

  20. Simple phase extraction in x-ray differential phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Xin, Liu; Jin-Chuan, Guo; Yao-Hu, Lei; Ji, Li; Han-Ben, Niu

    2016-02-01

    A fast and simple method to extract phase-contrast images from interferograms is proposed, and its effectiveness is demonstrated through simulation and experiment. For x-ray differential phase contrast imaging, a strong attenuation signal acts as an overwhelming background intensity that obscures the weak phase signal so that no obvious phase-gradient information is detectable in the raw image. By subtracting one interferogram from another, chosen at particular intervals, the phase signal can be isolated and magnified. Project supported by the National Natural Science Foundation of China (Grant Nos. 61101175, 61571305, and 61227802).

  1. Phase-contrast enhanced mammography: A new diagnostic tool for breast imaging

    NASA Astrophysics Data System (ADS)

    Wang, Zhentian; Thuering, Thomas; David, Christian; Roessl, Ewald; Trippel, Mafalda; Kubik-Huch, Rahel A.; Singer, Gad; Hohl, Michael K.; Hauser, Nik; Stampanoni, Marco

    2012-07-01

    Phase contrast and scattering-based X-ray imaging can potentially revolutionize the radiological approach to breast imaging by providing additional and complementary information to conventional, absorption-based methods. We investigated native, non-fixed whole breast samples using a grating interferometer with an X-ray tube-based configuration. Our approach simultaneously recorded absorption, differential phase contrast and small-angle scattering signals. The results show that this novel technique - combined with a dedicated image fusion algorithm - has the potential to deliver enhanced breast imaging with complementary information for an improved diagnostic process.

  2. Grating-Based Phase-Contrast Imaging of Tumor Angiogenesis in Lung Metastases

    PubMed Central

    Li, Xiangting; Wang, Yujie; Ding, Bei; Shi, Chen; Liu, Huanhuan; Tang, Rongbiao; Sun, Jianqi; Yan, Fuhua; Zhang, Huan

    2015-01-01

    Purpose To assess the feasibility of the grating-based phase-contrast imaging (GPI) technique for studying tumor angiogenesis in nude BALB/c mice, without contrast agents. Methods We established lung metastatic models of human gastric cancer by injecting the moderately differentiated SGC-7901 gastric cancer cell line into the tail vein of nude mice. Samples were embedded in a 10% formalin suspension and dried before imaging. Grating-based X-ray phase-contrast images were obtained at the BL13W beamline of the Shanghai Synchrotron Radiation Facility (SSRF) and compared with histological sections. Results Without contrast agents, grating-based X-ray phase-contrast imaging still differentiated angiogenesis within metastatic tumors with high spatial resolution. Vessels, down to tens of microns, showed gray values that were distinctive from those of the surrounding tumors, which made them easily identifiable. The vessels depicted in the imaging study were similar to those identified on histopathology, both in size and shape. Conclusions Our preliminary study demonstrates that grating-based X-ray phase-contrast imaging has the potential to depict angiogenesis in lung metastases. PMID:25811626

  3. In-line phase contrast micro-CT reconstruction for biomedical specimens.

    PubMed

    Fu, Jian; Tan, Renbo

    2014-01-01

    X-ray phase contrast micro computed tomography (micro-CT) can non-destructively provide the internal structure information of soft tissues and low atomic number materials. It has become an invaluable analysis tool for biomedical specimens. Here an in-line phase contrast micro-CT reconstruction technique is reported, which consists of a projection extraction method and the conventional filter back-projection (FBP) reconstruction algorithm. The projection extraction is implemented by applying the Fourier transform to the forward projections of in-line phase contrast micro-CT. This work comprises a numerical study of the method and its experimental verification using a biomedical specimen dataset measured at an X-ray tube source micro-CT setup. The numerical and experimental results demonstrate that the presented technique can improve the imaging contrast of biomedical specimens. It will be of interest for a wide range of in-line phase contrast micro-CT applications in medicine and biology. PMID:24211924

  4. Energy weighting in grating-based X-ray phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Pelzer, Georg; Weber, Thomas; Anton, Gisela; Ballabriga Sune, Rafael; Bayer, Florian; Campbell, Michael; Haas, Wilhelm; Horn, Florian; Llopart Cudie, Xavi; Michel, Norbert; Mollenbauer, Uwe; Rieger, Jens; Ritter, André; Ritter, Ina; Wölfel, Stefan; Wong, Winnie S.; Zang, Andrea; Michel, Thilo

    2014-03-01

    With energy-resolving photon-counting detectors in grating-based x-ray phase-contrast imaging it is possible to reduce the dose needed and optimize the imaging chain towards better performance. The advantage of photon- counting detector's linear energy response and absence of electronic noise in attenuation based imaging is known. The access to the energy information of the photons counted provides even further potential for optimization by applying energy weighting factors. We have evaluated energy weighting for grating-based phase-contrast imaging. Measurements with the hybrid photon-counting detector Dosepix were performed. The concept of energy binning implemented in the pixel electronics allows individual storing of the energy information of the incoming photons in 16 energy bins for each pixel. With this technique the full spectral information can be obtained pixel wise from one single acquisition. On the differential phase-contrast data taken, we applied different types of energy weighting factors. The results presented in this contribution demonstrate the advantages of energy-resolved photon-counting in differential phase-contrast imaging. Using a x-ray spectrum centred significantly above the interferometers design energy leads to poor image quality. But with the proposed method and detector the quality was enhanced by 2.8 times in signal-to-noise ratio squared. As this is proportional to dose, energy- resolved photon-counting might be valuable especially for medical applications.

  5. Benchmarking the x-ray phase contrast imaging for ICF DT ice characterization using roughened surrogates

    SciTech Connect

    Dewald, E; Kozioziemski, B; Moody, J; Koch, J; Mapoles, E; Montesanti, R; Youngblood, K; Letts, S; Nikroo, A; Sater, J; Atherton, J

    2008-06-26

    We use x-ray phase contrast imaging to characterize the inner surface roughness of DT ice layers in capsules planned for future ignition experiments. It is therefore important to quantify how well the x-ray data correlates with the actual ice roughness. We benchmarked the accuracy of our system using surrogates with fabricated roughness characterized with high precision standard techniques. Cylindrical artifacts with azimuthally uniform sinusoidal perturbations with 100 um period and 1 um amplitude demonstrated 0.02 um accuracy limited by the resolution of the imager and the source size of our phase contrast system. Spherical surrogates with random roughness close to that required for the DT ice for a successful ignition experiment were used to correlate the actual surface roughness to that obtained from the x-ray measurements. When comparing average power spectra of individual measurements, the accuracy mode number limits of the x-ray phase contrast system benchmarked against surface characterization performed by Atomic Force Microscopy are 60 and 90 for surrogates smoother and rougher than the required roughness for the ice. These agreement mode number limits are >100 when comparing matching individual measurements. We will discuss the implications for interpreting DT ice roughness data derived from phase-contrast x-ray imaging.

  6. Phase-contrast Hounsfield units of fixated and non-fixated soft-tissue samples

    DOE PAGESBeta

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; et al

    2015-08-31

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissuemore » specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. In addition, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results.« less

  7. Phase-contrast Hounsfield units of fixated and non-fixated soft-tissue samples

    SciTech Connect

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; Herzen, Julia; Rozhkova, Elena A.

    2015-08-31

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissue specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. In addition, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results.

  8. Phase-contrast X-ray imaging with synchrotron radiation for materials science applications

    NASA Astrophysics Data System (ADS)

    Stevenson, A. W.; Gureyev, T. E.; Paganin, D.; Wilkins, S. W.; Weitkamp, T.; Snigirev, A.; Rau, C.; Snigireva, I.; Youn, H. S.; Dolbnya, I. P.; Yun, W.; Lai, B.; Garrett, R. F.; Cookson, D. J.; Hyodo, K.; Ando, M.

    2003-01-01

    Since Röntgen's discovery of X-rays just over a century ago the vast majority of radiographs have been collected and interpreted on the basis of absorption contrast and geometrical (ray) optics. Recently the possibility of obtaining new and complementary information in X-ray images by utilizing phase-contrast effects has received considerable attention, both in the laboratory context and at synchrotron sources (where much of this activity is a consequence of the highly coherent X-ray beams which can be produced). Phase-contrast X-ray imaging is capable of providing improved information from weakly absorbing features in a sample, together with improved edge definition. Four different experimental arrangements for achieving phase contrast in the hard X-ray regime, for the purpose of non-destructive characterization of materials, will be described. Two of these, demonstrated at ESRF in France and AR in Japan, are based on parallel-beam geometry; the other two, demonstrated at PLS in Korea and APS in USA, are based on spherical-beam geometry. In each case quite different X-ray optical arrangements were used. Some image simulations will be employed to demonstrate salient features of hard X-ray phase-contrast imaging and examples of results from each of the experiments will be shown.

  9. Visualization of water drying in porous materials by X-ray phase contrast imaging.

    PubMed

    Yang, F; Griffa, M; Bonnin, A; Mokso, R; DI Bella, C; Münch, B; Kaufmann, R; Lura, P

    2015-01-01

    We present in this study results from X-ray tomographic microscopy with synchrotron radiation performed both in attenuation and phase contrast modes on a limestone sample during two stages of water drying. No contrast agent was used in order to increase the X-ray attenuation by water. We show that only by using the phase contrast mode it is possible to achieve enough water content change resolution to investigate the drying process at the pore-scale. We performed 3D image analysis of the time-differential phase contrast tomogram. We show by the results of such analysis that it is possible to obtain a reliable characterization of the spatial redistribution of water in the resolved pore system in agreement with what expected from the theory of drying in porous media and from measurements performed with other approaches. We thus show the potential of X-ray phase contrast imaging for pore-scale investigations of reactive water transport processes which cannot be imaged by adding a contrast agent for exploiting the standard attenuation contrast imaging mode. PMID:26469285

  10. Beam hardening effects in grating-based x-ray phase-contrast imaging

    SciTech Connect

    Chabior, Michael; Donath, Tilman; David, Christian; Bunk, Oliver; Schuster, Manfred; Schroer, Christian; Pfeiffer, Franz

    2011-03-15

    Purpose: In this work, the authors investigate how beam hardening affects the image formation in x-ray phase-contrast imaging and consecutively develop a correction algorithm based on the results of the analysis. Methods: The authors' approach utilizes a recently developed x-ray imaging technique using a grating interferometer capable of visualizing the differential phase shift of a wave front traversing an object. An analytical description of beam hardening is given, highlighting differences between attenuation and phase-contrast imaging. The authors present exemplary beam hardening artifacts for a number of well-defined samples in measurements at a compact laboratory setup using a polychromatic source. Results: Despite the differences in image formation, the authors show that beam hardening leads to a similar reduction of image quality in phase-contrast imaging as in conventional attenuation-contrast imaging. Additionally, the authors demonstrate that for homogeneous objects, beam hardening artifacts can be corrected by a linearization technique, applicable to all kinds of phase-contrast methods using polychromatic sources. Conclusions: The evaluated correction algorithm is shown to yield good results for a number of simple test objects and can thus be advocated in medical imaging and nondestructive testing.

  11. Towards the clinical application of X-ray phase contrast imaging.

    PubMed

    Williams, I M; Siu, K K W; Gan, R; Runxuan, G; He, X; Hart, S A; Styles, C B; Lewis, R A

    2008-12-01

    Synchrotron-based propagation-based imaging, a type of phase contrast imaging, produces better soft tissue image contrast than conventional radiography. To determine whether the technique is directly transferable to the clinical environment for routine diagnostic or screening imaging, a micro-focus (100 microm spot-size) Molybdenum X-ray source with 0.03 mm molybdenum filtration was installed at a local hospital. Breast tissue samples, excised masses and mastectomies, were obtained directly from surgery and imaged at three geometries. The first geometry was optimised for visualizing phase contrast effects using a ray-line argument, the second was the same as that employed by Konica-Minolta in their commercial phase contrast system, and the third was the conventional contact arrangement. The three images taken of each tissue sample were comparatively scored in a pair-wise fashion. Scoring was performed by radiologist expert in mammography, general radiologists, associated clinicians and radiographers on high-resolution mammography rated monitors at two separate locations. Scoring indicated that the optimised and Konica geometries both outperformed the conventional mammographic geometry. An unexpected complication within the trial was the effect that the scoring platform and the associated display tools had on some of the scorer's responses. Additionally, the trial revealed that none of the conventional descriptors for image quality were adequate in the presence of phase contrast enhancements. PMID:18996661

  12. Phase-Contrast Hounsfield Units of Fixated and Non-Fixated Soft-Tissue Samples

    PubMed Central

    Willner, Marian; Fior, Gabriel; Marschner, Mathias; Birnbacher, Lorenz; Schock, Jonathan; Braun, Christian; Fingerle, Alexander A.; Noël, Peter B.; Rummeny, Ernst J.; Pfeiffer, Franz; Herzen, Julia

    2015-01-01

    X-ray phase-contrast imaging is a novel technology that achieves high soft-tissue contrast. Although its clinical impact is still under investigation, the technique may potentially improve clinical diagnostics. In conventional attenuation-based X-ray computed tomography, radiological diagnostics are quantified by Hounsfield units. Corresponding Hounsfield units for phase-contrast imaging have been recently introduced, enabling a setup-independent comparison and standardized interpretation of imaging results. Thus far, the experimental values of few tissue types have been reported; these values have been determined from fixated tissue samples. This study presents phase-contrast Hounsfield units for various types of non-fixated human soft tissues. A large variety of tissue specimens ranging from adipose, muscle and connective tissues to liver, kidney and pancreas tissues were imaged by a grating interferometer with a rotating-anode X-ray tube and a photon-counting detector. Furthermore, we investigated the effects of formalin fixation on the quantitative phase-contrast imaging results. PMID:26322638

  13. Refracting Roentgen's rays: Propagation-based x-ray phase contrast for biomedical imaging

    SciTech Connect

    Gureyev, T. E.; Mayo, S. C.; Nesterets, Ya.; Pogany, A.; Stevenson, A. W.; Wilkins, S. W.; Myers, D. E.; Paganin, D. M.

    2009-05-15

    Absorption-contrast x-ray imaging serves to visualize the variation in x-ray attenuation within the volume of a given sample, whereas phase contrast allows one to visualize variations in x-ray refractive index. The former imaging mechanism has been well known and widely utilized since the time of Roentgen's Nobel prize winning work, whereas the latter mechanism--sought for, but not found, by Roentgen himself--has laid the foundation for a revolution in x-ray imaging which is the central topic of this review. We consider the physical imaging mechanisms underlying both absorption contrast and phase contrast, together with the associated inverse problem of how one may obtain quantitative two- or three-dimensional information regarding a sample, given one or more phase-contrast images of the same. Practical questions are considered, regarding optimized phase-contrast imaging geometries as a function of detector resolution, source size, x-ray spectrum, and dose. Experimental examples pertaining to biomedical applications are given, and prospects for the future outlined.

  14. Hard X-Ray Phase-Contrast Imaging for Medical Applications - Physicist's Dream or Radiologist's Mainstream?

    SciTech Connect

    Wilkins, S. W.; Gureyev, T. E.; Mayo, S. C.; Nesterets, Ya. I.; Pogany, A.; Stevenson, A. W.; Paganin, D. M.

    2007-03-30

    We briefly review currently practiced methods of X-ray phase contrast imaging and consider some of their relative features, especially in regard to applicability to clinical medical studies. Various related technological issues and promising future areas of development are also briefly discussed.

  15. Free-Breathing Contrast-Enhanced Multiphase MRI of the Liver Using a Combination of Compressed Sensing, Parallel Imaging, and Golden-Angle Radial Sampling

    PubMed Central

    Chandarana, Hersh; Feng, Li; Block, Tobias K.; Rosenkrantz, Andrew B.; Lim, Ruth P.; Babb, James S.; Sodickson, Daniel K.; Otazo, Ricardo

    2013-01-01

    Objective The objectives of this study were to develop a new method for free-breathing contrast-enhanced multiphase liver magnetic resonance imaging (MRI) using a combination of compressed sensing, parallel imaging, and radial k-space sampling and to demonstrate the feasibility of this method by performing image quality comparison with breath-hold cartesian T1-weighted (conventional) postcontrast acquisitions in healthy participants. Materials and Methods This Health Insurance Portability and Accountability Act–compliant prospective study received approval from the institutional review board. Eight participants underwent 3 separate contrast-enhanced fat-saturated T1-weighted gradient-echo MRI examinations with matching imaging parameters: conventional breath-hold examination with cartesian k-space sampling volumetric interpolate breath hold examination (BH-VIBE) and free-breathing acquisitions with interleaved angle-bisection and continuous golden-angle radial sampling schemes. Interleaved angle-bisection and golden-angle data from each 100 consecutive spokes were reconstructed using a combination of compressed sensing and parallel imaging (interleaved-angle radial sparse parallel [IARASP] and golden-angle radial sparse parallel [GRASP]) to generate multiple postcontrast phases. Arterial- and venous-phase BH-VIBE, IARASP, and GRASP reconstructions were evaluated by 2 radiologists in a blinded fashion. The readers independently assessed quality of enhancement (QE), overall image quality (IQ), and other parameters of image quality on a 5-point scale, with the highest score indicating the most desirable examination. Mixed model analysis of variance was used to compare each measure of image quality. Results Images of BH-VIBE and GRASP had significantly higher QE and IQ values compared with IARASP for both phases (P < 0.05). The differences in QE between BH-VIBE and GRASP for the arterial and venous phases were not significant (P > 0.05). Although GRASP had lower IQ

  16. Evaluation of a new reconstruction algorithm for x-ray phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Seifert, Maria; Hauke, Christian; Horn, Florian; Lachner, Sebastian; Ludwig, Veronika; Pelzer, Georg; Rieger, Jens; Schuster, Max; Wandner, Johannes; Wolf, Andreas; Michel, Thilo; Anton, Gisela

    2016-04-01

    X-ray grating-based phase-contrast imaging might open up entirely new opportunities in medical imaging. However, transferring the interferometer technique from laboratory setups to conventional imaging systems the necessary rigidity of the system is difficult to achieve. Therefore, vibrations or distortions of the system lead to inaccuracies within the phase-stepping procedure. Given insufficient stability of the phase-step positions, up to now, artifacts in phase-contrast images occur, which lower the image quality. This is a problem with regard to the intended use of phase-contrast imaging in clinical routine as for example tiny structures of the human anatomy cannot be observed. In this contribution we evaluate an algorithm proposed by Vargas et.al.1 and applied to X-ray imaging by Pelzer et.al. that enables us to reconstruct a differential phase-contrast image without the knowledge of the specific phase-step positions. This method was tested in comparison to the standard reconstruction by Fourier analysis. The quality of phase-contrast images remains stable, even if the phase-step positions are completely unknown and not uniformly distributed. To also achieve attenuation and dark-field images the proposed algorithm has been combined with a further algorithm of Vargas et al.3 Using this algorithm, the phase-step positions can be reconstructed. With the help of the proper phase-step positions it is possible to get information about the phase, the amplitude and the offset of the measured data. We evaluated this algorithm concerning the measurement of thick objects which show a high absorbency.

  17. Prospective-gated cardiac micro-CT imaging of free-breathing mice using carbon nanotube field emission x-ray

    SciTech Connect

    Cao Guohua; Burk, Laurel M.; Lee, Yueh Z.; Calderon-Colon, Xiomara; Sultana, Shabana; Lu Jianping; Zhou, Otto

    2010-10-15

    Purpose: Carbon nanotube (CNT) based field emission x-ray source technology has recently been investigated for diagnostic imaging applications because of its attractive characteristics including electronic programmability, fast switching, distributed source, and multiplexing. The purpose of this article is to demonstrate the potential of this technology for high-resolution prospective-gated cardiac micro-CT imaging. Methods: A dynamic cone-beam micro-CT scanner was constructed using a rotating gantry, a stationary mouse bed, a flat-panel detector, and a sealed CNT based microfocus x-ray source. The compact single-beam CNT x-ray source was operated at 50 KVp and 2 mA anode current with 100 {mu}mx100 {mu}m effective focal spot size. Using an intravenously administered iodinated blood-pool contrast agent, prospective cardiac and respiratory-gated micro-CT images of beating mouse hearts were obtained from ten anesthetized free-breathing mice in their natural position. Four-dimensional cardiac images were also obtained by gating the image acquisition to different phases in the cardiac cycle. Results: High-resolution CT images of beating mouse hearts were obtained at 15 ms temporal resolution and 6.2 lp/mm spatial resolution at 10% of system MTF. The images were reconstructed at 76 {mu}m isotropic voxel size. The data acquisition time for two cardiac phases was 44{+-}9 min. The CT values observed within the ventricles and the ventricle wall were 455{+-}49 and 120{+-}48 HU, respectively. The entrance dose for the acquisition of a single phase of the cardiac cycle was 0.10 Gy. Conclusions: A high-resolution dynamic micro-CT scanner was developed from a compact CNT microfocus x-ray source and its feasibility for prospective-gated cardiac micro-CT imaging of free-breathing mice under their natural position was demonstrated.

  18. Characterization of the CCD and CMOS cameras for grating-based phase-contrast tomography

    NASA Astrophysics Data System (ADS)

    Lytaev, Pavel; Hipp, Alexander; Lottermoser, Lars; Herzen, Julia; Greving, Imke; Khokhriakov, Igor; Meyer-Loges, Stephan; Plewka, Jörn; Burmester, Jörg; Caselle, Michele; Vogelgesang, Matthias; Chilingaryan, Suren; Kopmann, Andreas; Balzer, Matthias; Schreyer, Andreas; Beckmann, Felix

    2014-09-01

    In this article we present the quantitative characterization of CCD and CMOS sensors which are used at the experiments for microtomography operated by HZG at PETRA III at DESY in Hamburg, Germany. A standard commercial CCD camera is compared to a camera based on a CMOS sensor. This CMOS camera is modified for grating-based differential phase-contrast tomography. The main goal of the project is to quantify and to optimize the statistical parameters of this camera system. These key performance parameters such as readout noise, conversion gain and full-well capacity are used to define an optimized measurement for grating-based phase-contrast. First results will be shown.

  19. Enhancing Tabletop X-Ray Phase Contrast Imaging with Nano-Fabrication

    PubMed Central

    Miao, Houxun; Gomella, Andrew A.; Harmon, Katherine J.; Bennett, Eric E.; Chedid, Nicholas; Znati, Sami; Panna, Alireza; Foster, Barbara A.; Bhandarkar, Priya; Wen, Han

    2015-01-01

    X-ray phase-contrast imaging is a promising approach for improving soft-tissue contrast and lowering radiation dose in biomedical applications. While current tabletop imaging systems adapt to common x-ray tubes and large-area detectors by employing absorptive elements such as absorption gratings or monolithic crystals to filter the beam, we developed nanometric phase gratings which enable tabletop x-ray far-field interferometry with only phase-shifting elements, leading to a substantial enhancement in the performance of phase contrast imaging. In a general sense the method transfers the demands on the spatial coherence of the x-ray source and the detector resolution to the feature size of x-ray phase masks. We demonstrate its capabilities in hard x-ray imaging experiments at a fraction of clinical dose levels and present comparisons with the existing Talbot-Lau interferometer and with conventional digital radiography. PMID:26315891

  20. Cone-beam differential phase-contrast laminography with x-ray tube source

    NASA Astrophysics Data System (ADS)

    Fu, J.; Biernath, T.; Willner, M.; Amberger, M.; Meiser, J.; Kunka, D.; Mohr, J.; Herzen, J.; Bech, M.; Pfeiffer, F.

    2014-06-01

    We report on an x-ray cone-beam differential phase-contrast computed laminography (DPC-CL) method for tomographic reconstruction of thin and lamellar objects. We describe the specific scan geometry of DPC-CL, which consists of a Talbot-Lau grating interferometer and a lab-based x-ray tube source, and derive a filtered back-projection (FBP) reconstruction algorithm. The experimental results of a flat sphere phantom and a piece of ham demonstrate the validity of the proposed technique. The existing DPC-CL methods are based on synchrotron sources and the parallel-beam geometry. In contrast, our approach adopts a more accessible x-ray tube source and a cone-beam geometry. Therefore it significantly widens the application range of phase-contrast laminography, particularly in practical laboratory settings, beyond applications at large-scale synchrotron facilities.

  1. Propagation-based phase-contrast tomography for high-resolution lung imaging with laboratory sources

    NASA Astrophysics Data System (ADS)

    Krenkel, Martin; Töpperwien, Mareike; Dullin, Christian; Alves, Frauke; Salditt, Tim

    2016-03-01

    We have performed high-resolution phase-contrast tomography on whole mice with a laboratory setup. Enabled by a high-brilliance liquid-metal-jet source, we show the feasibility of propagation-based phase contrast in local tomography even in the presence of strongly absorbing surrounding tissue as it is the case in small animal imaging of the lung. We demonstrate the technique by reconstructions of the mouse lung for two different fields of view, covering the whole organ, and a zoom to the local finer structure of terminal airways and alveoli. With a resolution of a few micrometers and the wide availability of the technique, studies of larger biological samples at the cellular level become possible.

  2. Improved algorithm for processing grating-based phase contrast interferometry image sets.

    PubMed

    Marathe, Shashidhara; Assoufid, Lahsen; Xiao, Xianghui; Ham, Kyungmin; Johnson, Warren W; Butler, Leslie G

    2014-01-01

    Grating-based X-ray and neutron interferometry tomography using phase-stepping methods generates large data sets. An improved algorithm is presented for solving for the parameters to calculate transmissions, differential phase contrast, and dark-field images. The method takes advantage of the vectorization inherent in high-level languages such as Mathematica and MATLAB and can solve a 16 × 1k × 1k data set in less than a second. In addition, the algorithm can function with partial data sets. This is demonstrated with processing of a 16-step grating data set with partial use of the original data chosen without any restriction. Also, we have calculated the reduced chi-square for the fit and notice the effect of grating support structural elements upon the differential phase contrast image and have explored expanded basis set representations to mitigate the impact. PMID:24517772

  3. Multi-pore carbon phase plate for phase-contrast transmission electron microscopy.

    PubMed

    Sannomiya, Takumi; Junesch, Juliane; Hosokawa, Fumio; Nagayama, Kuniaki; Arai, Yoshihiro; Kayama, Yoko

    2014-11-01

    A new fabrication method of carbon based phase plates for phase-contrast transmission electron microscopy is presented. This method utilizes colloidal masks to produce pores as well as disks on thin carbon membranes for phase modulation. Since no serial process is involved, carbon phase plate membranes containing hundreds of pores can be mass-produced on a large scale, which allows "disposal" of contaminated or degraded phase modulating objects after use. Due to the spherical shape of the mask colloid particles, the produced pores are perfectly circular. The pore size and distribution can be easily tuned by the mask colloid size and deposition condition. By using the stencil method, disk type phase plates can also be fabricated on a pore type phase plate. Both pore and disk type phase plates were tested by measuring amorphous samples and confirmed to convert the sinus phase contrast transfer function to the cosine shape. PMID:25129640

  4. An iterative method for robust in-line phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Carroll, Aidan J.; van Riessen, Grant A.; Balaur, Eugeniu; Dolbnya, Igor P.; Tran, Giang N.; Peele, Andrew G.

    2016-04-01

    We present an iterative near-field in-line phase contrast method that allows quantitative determination of the thickness of an object given the refractive index of the sample material. The iterative method allows for quantitative phase contrast imaging in regimes where the contrast transfer function (CTF) and transport of intensity equation (TIE) cannot be applied. Further, the nature of the iterative scheme offers more flexibility and potentially allows more high-resolution image reconstructions when compared to TIE method and less artefacts when compared to the CTF method. While, not addressed here, extension of our approach in future work to broadband illumination will also be straightforward as the wavelength dependence of the refractive index of an object can be readily incorporated into the iterative approach.

  5. Improved algorithm for processing grating-based phase contrast interferometry image sets

    SciTech Connect

    Marathe, Shashidhara Assoufid, Lahsen Xiao, Xianghui; Ham, Kyungmin; Johnson, Warren W.; Butler, Leslie G.

    2014-01-15

    Grating-based X-ray and neutron interferometry tomography using phase-stepping methods generates large data sets. An improved algorithm is presented for solving for the parameters to calculate transmissions, differential phase contrast, and dark-field images. The method takes advantage of the vectorization inherent in high-level languages such as Mathematica and MATLAB and can solve a 16 × 1k × 1k data set in less than a second. In addition, the algorithm can function with partial data sets. This is demonstrated with processing of a 16-step grating data set with partial use of the original data chosen without any restriction. Also, we have calculated the reduced chi-square for the fit and notice the effect of grating support structural elements upon the differential phase contrast image and have explored expanded basis set representations to mitigate the impact.

  6. Enhancing Tabletop X-Ray Phase Contrast Imaging with Nano-Fabrication

    NASA Astrophysics Data System (ADS)

    Miao, Houxun; Gomella, Andrew A.; Harmon, Katherine J.; Bennett, Eric E.; Chedid, Nicholas; Znati, Sami; Panna, Alireza; Foster, Barbara A.; Bhandarkar, Priya; Wen, Han

    2015-08-01

    X-ray phase-contrast imaging is a promising approach for improving soft-tissue contrast and lowering radiation dose in biomedical applications. While current tabletop imaging systems adapt to common x-ray tubes and large-area detectors by employing absorptive elements such as absorption gratings or monolithic crystals to filter the beam, we developed nanometric phase gratings which enable tabletop x-ray far-field interferometry with only phase-shifting elements, leading to a substantial enhancement in the performance of phase contrast imaging. In a general sense the method transfers the demands on the spatial coherence of the x-ray source and the detector resolution to the feature size of x-ray phase masks. We demonstrate its capabilities in hard x-ray imaging experiments at a fraction of clinical dose levels and present comparisons with the existing Talbot-Lau interferometer and with conventional digital radiography.

  7. CO2-based in-line phase contrast imaging of small intestine in mice

    PubMed Central

    Tang, Rongbiao; Li, Wei-Xia; Huang, Wei; Yan, Fuhua; Chai, Wei-Min; Yang, Guo-Yuan; Chen, Ke-Min

    2013-01-01

    The objective of this study was to explore the potential of CO2 single contrast in-line phase contrast imaging (PCI) for pre-clinical small intestine investigation. The absorption and phase contrast images of CO2 gas production were attained and compared. A further increase in image contrast was observed in PCI. Compared with CO2-based absorption contrast imaging (ACI), CO2-based PCI significantly enhanced the detection of mucosal microstructures, such as pits and folds. The CO2-based PCI could provide sufficient image contrast for clearly showing the intestinal mucosa in living mice without using barium. We concluded that CO2-based PCI might be a novel and promising imaging method for future studies of gastrointestinal disorders. PMID:23896957

  8. Enhancing Tabletop X-Ray Phase Contrast Imaging with Nano-Fabrication.

    PubMed

    Miao, Houxun; Gomella, Andrew A; Harmon, Katherine J; Bennett, Eric E; Chedid, Nicholas; Znati, Sami; Panna, Alireza; Foster, Barbara A; Bhandarkar, Priya; Wen, Han

    2015-01-01

    X-ray phase-contrast imaging is a promising approach for improving soft-tissue contrast and lowering radiation dose in biomedical applications. While current tabletop imaging systems adapt to common x-ray tubes and large-area detectors by employing absorptive elements such as absorption gratings or monolithic crystals to filter the beam, we developed nanometric phase gratings which enable tabletop x-ray far-field interferometry with only phase-shifting elements, leading to a substantial enhancement in the performance of phase contrast imaging. In a general sense the method transfers the demands on the spatial coherence of the x-ray source and the detector resolution to the feature size of x-ray phase masks. We demonstrate its capabilities in hard x-ray imaging experiments at a fraction of clinical dose levels and present comparisons with the existing Talbot-Lau interferometer and with conventional digital radiography. PMID:26315891

  9. Sensitivity of edge illumination X-ray phase-contrast imaging

    PubMed Central

    Diemoz, P. C.; Endrizzi, M.; Bravin, A.; Robinson, I. K.; Olivo, A.

    2014-01-01

    Recently, we developed a theoretical model that can predict the signal-to-noise ratio for edge-like features in phase-contrast images. This model was then applied for the estimation of the sensitivity of three different X-ray phase-contrast techniques: propagation-based imaging, analyser-based imaging and grating interferometry. We show here how the same formalism can be used also in the case of the edge illumination (EI) technique, providing results that are consistent with those of a recently developed method for the estimation of noise in the retrieved refraction image. The new model is then applied to calculate, in the case of a given synchrotron radiation set-up, the optimum positions of the pre-sample aperture and detector edge to maximize the sensitivity. Finally, an example of the extremely high angular resolution achievable with the EI technique is presented. PMID:24470420

  10. Phase Contrast Cone Beam Tomography with an X-Ray Grating Interferometer

    NASA Astrophysics Data System (ADS)

    Jerjen, I.; Revol, V.; Kottler, C.; Luethi, Th.; Sennhauser, U.; Kaufmann, R.; Urban, C.

    2010-04-01

    We report on our recent developments of reconstruction algorithms for Differential Phase Contrast X-ray Computed Tomography (DPC CT). DPC images provide information about the real and imaginary part of the refractive index which is an advantage when objects with poor absorption but good phase contrast are inspected. In order to promote DPC CT for industrial applications we developed an adapted Feldkamp algorithm which allows reconstructing the three-dimensional image of the refractive index of an object from the DPC projections obtained with our large field of view, high energy grating interferometer set up in a cone beam geometry. We present slice images of a test object and show different ways of visualization of the phase and absorption information.

  11. Development of microperiodic mirrors for hard x-ray phase-contrast imaging

    SciTech Connect

    Stutman, Dan; Finkenthal, Michael; Moldovan, Nicolae

    2010-09-01

    Differential phase-contrast imaging with hard x rays can have important applications in medicine, material sciences, and energy research. Phase-contrast methods based on microperiodic optics, such as shearing interferometry, are particularly attractive because they allow the use of conventional x-ray tubes. To enable shearing interferometry with x rays up to 100 keV, we propose using grazing-incidence microperiodic mirrors. In addition, a simple lithographic method is proposed for the production of the microperiodic x-ray mirrors, based on the difference in grazing-incidence reflectivity between a low-Z substrate and a high-Z film. Using this method, we produced prototype mirrors with 5-100 {mu}m periods and 90 mm active length. Experimental tests with x rays up to 60 keV indicate good microperiodic mirror reflectivity and high-contrast fringe patterns, encouraging further development of the proposed imaging concept.

  12. CO2-based in-line phase contrast imaging of small intestine in mice

    NASA Astrophysics Data System (ADS)

    Tang, Rongbiao; Li, Wei-Xia; Huang, Wei; Yan, Fuhua; Chai, Wei-Min; Yang, Guo-Yuan; Chen, Ke-Min

    2013-07-01

    The objective of this study was to explore the potential of CO2 single contrast in-line phase contrast imaging (PCI) for pre-clinical small intestine investigation. The absorption and phase contrast images of CO2 gas production were attained and compared. A further increase in image contrast was observed in PCI. Compared with CO2-based absorption contrast imaging (ACI), CO2-based PCI significantly enhanced the detection of mucosal microstructures, such as pits and folds. The CO2-based PCI could provide sufficient image contrast for clearly showing the intestinal mucosa in living mice without using barium. We concluded that CO2-based PCI might be a novel and promising imaging method for future studies of gastrointestinal disorders.

  13. A study of quantification of aortic compliance in mice using radial acquisition phase contrast MRI

    NASA Astrophysics Data System (ADS)

    Zhao, Xuandong

    Spatiotemporal changes in blood flow velocity measured using Phase contrast Magnetic Resonance Imaging (MRI) can be used to quantify Pulse Wave Velocity (PWV) and Wall Shear Stress (WSS), well known indices of vessel compliance. A study was conducted to measure the PWV in the aortic arch in young healthy children using conventional phase contrast MRI and a post processing algorithm that automatically track the peak velocity in phase contrast images. It is shown that the PWV calculated using peak velocity-time data has less variability compared to that using mean velocity and flow. Conventional MR data acquisition techniques lack both the spatial and temporal resolution needed to accurately calculate PWV and WSS in in vivo studies using transgenic animal models of arterial diseases. Radial k-space acquisition can improve both spatial and temporal resolution. A major part of this thesis was devoted to developing technology for Radial Phase Contrast Magnetic Resonance (RPCMR) cine imaging on a 7 Tesla Animal scanner. A pulse sequence with asymmetric radial k-space acquisition was designed and implemented. Software developed to reconstruct the RPCMR images include gridding, density compensation and centering of k-Space that corrects the image ghosting introduced by hardware response time. Image processing software was developed to automatically segment the vessel lumen and correct for phase offset due to eddy currents. Finally, in vivo and ex vivo aortic compliance measurements were conducted in a well-established mouse model for atherosclerosis: Apolipoprotein E-knockout (ApoE-KO). Using RPCMR technique, a significantly higher PWV value as well as a higher average WSS was detected among 9 months old ApoE-KO mice compare to in wild type mice. A follow up ex-vivo test of tissue elasticity confirmed the impaired distensibility of aortic arteries among ApoE-KO mice.

  14. A quantitative, non-interferometric X-ray phase contrast imaging technique

    PubMed Central

    Munro, Peter R.T.; Rigon, Luigi; Ignatyev, Konstantin; Lopez, Frances C.M.; Dreossi, Diego; Speller, Robert D.; Olivo, Alessandro

    2013-01-01

    We present a quantitative, non-interferometric, X-ray differential phase contrast imaging technique based on the edge illumination principle. We derive a novel phase retrieval algorithm which requires only two images to be acquired and verify the technique experimentally using synchrotron radiation. The technique is useful for planar imaging but is expected to be important for quantitative phase tomography also. The properties and limitations of the technique are studied in detail. PMID:23388958

  15. Theoretical analysis of x-ray CT phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Feng, Sheng; Liu, Song; Zhang, Xuelong

    2008-12-01

    Recently phase contrast imaging has attracted much attention. An obvious advantage of using X-rays for imaging the internal structure of relatively thick samples lies in its high degree of penetration of solid objects. However, often leads to poor image contrast for soft tissue. Phase contrast imaging can be very useful in such situation, as the phase of the transmitted beam may often be more sensitive indicator of density of sample than convention contrast. On the other hand, Computed Tomography is the best technology in the aspect of X-rays detection. Using the technology, the detected object can be imaged to three-dimensional image, so as to observe the inner structure of object, and be convenient to the disease examination. If the phase contrast imaging can be used to the technology of Computed Tomography, the high resolution image can be gained. The technology will become the development orientation of medical image. The aim of this article was to apply the theory of X-rays phase contrast imaging to the traditional X-CT technique. For this purpose, the formula deduced from the imaging theory with parallel monochromatic X-rays illuminating the object based on the Fresnel-Kircohhof theory had been completed and a formula similar to that of the traditional X-CT reconstruction had been gained, which was Radon transform formula. At last, X-rays reconstruction simulation had been carried out according to the formula, and proved that the method could be used in clinical medical imaging. The method discussed in this paper had a very bright prospect for application.

  16. Myelinated mouse nerves studied by X-ray phase contrast zoom tomography.

    PubMed

    Bartels, M; Krenkel, M; Cloetens, P; Möbius, W; Salditt, T

    2015-12-01

    We have used X-ray phase contrast tomography to resolve the structure of uncut, entire myelinated optic, saphenous and sciatic mouse nerves. Intrinsic electron density contrast suffices to identify axonal structures. Specific myelin labeling by an osmium tetroxide stain enables distinction between axon and surrounding myelin sheath. Utilization of spherical wave illumination enables zooming capabilities which enable imaging of entire sciatic internodes as well as identification of sub-structures such as nodes of Ranvier and Schmidt-Lanterman incisures. PMID:26546551

  17. Three-dimensional characterization of electrodeposited lithium microstructures using synchrotron X-ray phase contrast imaging.

    PubMed

    Eastwood, David S; Bayley, Paul M; Chang, Hee Jung; Taiwo, Oluwadamilola O; Vila-Comamala, Joan; Brett, Daniel J L; Rau, Christoph; Withers, Philip J; Shearing, Paul R; Grey, Clare P; Lee, Peter D

    2015-01-01

    The electrodeposition of metallic lithium is a major cause of failure in lithium batteries. The 3D microstructure of electrodeposited lithium 'moss' in liquid electrolytes has been characterised at sub-micron resolution for the first time. Using synchrotron X-ray phase contrast imaging we distinguish mossy metallic lithium microstructures from high surface area lithium salt formations by their contrasting X-ray attenuation. PMID:24898258

  18. Use of cine phase-contrast MRI in the assessment of distal splenorenal shunt function.

    PubMed

    Cabassa, Paolo; Ravanelli, Marco; Alberti, Daniele; Maroldi, Roberto

    2012-06-01

    Magnetic resonance imaging (MRI) features of a surgical splenorenal shunt in a 28-year-old girl are described. The woman underwent color doppler ultrasonography during follow up for the shunt, which was inconclusive. MR was used to investigate the function of the shunt. Velocity and flow direction in splanchnic vessels and in the shunt were evaluated using cine fast phase-contrast sequences. MR findings could be of help in the evaluation of patients undergoing surgical shunts during follow up. PMID:22405982

  19. X-Ray Grating Interferometry for Phase-Contrast Imaging and Optics Metrology Applications

    NASA Astrophysics Data System (ADS)

    David, Christian; Rutishauser, Simon; Thüring, Thomas; Donath, Tilman; Stampanoni, Marco

    2010-04-01

    We report on a hard x-ray interferometry technique based on diffraction gratings fabricated using microlithography techniques. Compared to other x-ray phase-contrast imaging methods, the grating interferometer only has very moderate requirements in terms of coherence. This makes it possible to use the method with standard x-ray tubes, which opens up a huge range of applications e.g. in medical imaging.

  20. Helical X-ray phase-contrast computed tomography without phase stepping

    PubMed Central

    Marschner, M.; Willner, M.; Potdevin, G.; Fehringer, A.; Noël, P. B.; Pfeiffer, F.; Herzen, J.

    2016-01-01

    X-ray phase-contrast computed tomography (PCCT) using grating interferometry provides enhanced soft-tissue contrast. The possibility to use standard polychromatic laboratory sources enables an implementation into a clinical setting. Thus, PCCT has gained significant attention in recent years. However, phase-contrast CT scans still require significantly increased measurement times in comparison to conventional attenuation-based CT imaging. This is mainly due to a time-consuming stepping of a grating, which is necessary for an accurate retrieval of the phase information. In this paper, we demonstrate a novel scan technique, which directly allows the determination of the phase signal without a phase-stepping procedure. The presented work is based on moiré fringe scanning, which allows fast data acquisition in radiographic applications such as mammography or in-line product analysis. Here, we demonstrate its extension to tomography enabling a continuous helical sample rotation as routinely performed in clinical CT systems. Compared to standard phase-stepping techniques, the proposed helical fringe-scanning procedure enables faster measurements, an extended field of view and relaxes the stability requirements of the system, since the gratings remain stationary. Finally, our approach exceeds previously introduced methods by not relying on spatial interpolation to acquire the phase-contrast signal. PMID:27052368

  1. Automatic detection of endothelial cells in 3D angiogenic sprouts from experimental phase contrast images

    NASA Astrophysics Data System (ADS)

    Wang, MengMeng; Ong, Lee-Ling Sharon; Dauwels, Justin; Asada, H. Harry

    2015-03-01

    Cell migration studies in 3D environments become more popular, as cell behaviors in 3D are more similar to the behaviors of cells in a living organism (in vivo). We focus on the 3D angiogenic sprouting in microfluidic devices, where Endothelial Cells (ECs) burrow into the gel matrix and form solid lumen vessels. Phase contrast microscopy is used for long-term observation of the unlabeled ECs in the 3D microfluidic devices. Two template matching based approaches are proposed to automatically detect the unlabeled ECs in the angiogenic sprouts from the acquired experimental phase contrast images. Cell and non-cell templates are obtained from these phase contrast images as the training data. The first approach applies Partial Least Square Regression (PLSR) to find the discriminative features and their corresponding weight to distinguish cells and non-cells, whereas the second approach relies on Principal Component Analysis (PCA) to reduce the template feature dimension and Support Vector Machine (SVM) to find their corresponding weight. Through a sliding window manner, the cells in the test images are detected. We then validate the detection accuracy by comparing the results with the same images acquired with a confocal microscope after cells are fixed and their nuclei are stained. More accurate numerical results are obtained for approach I (PLSR) compared to approach II (PCA & SVM) for cell detection. Automatic cell detection will aid in the understanding of cell migration in 3D environment and in turn result in a better understanding of angiogenesis.

  2. A uniqueness result for propagation-based phase contrast imaging from a single measurement

    NASA Astrophysics Data System (ADS)

    Maretzke, Simon

    2015-06-01

    Phase contrast imaging seeks to reconstruct the complex refractive index of an unknown sample from scattering intensities, measured for example under illumination with coherent x-rays. By incorporating refraction, this method yields improved contrast compared to purely absorption-based radiography but involves a phase retrieval problem which, in general, allows for ambiguous reconstructions. In this paper, we show uniqueness of propagation-based phase contrast imaging for compactly supported objects in the near-field regime, based on a description by the projection- and paraxial approximations. In this setting, propagation is governed by the Fresnel propagator and the unscattered part of the illumination function provides a known reference wave at the detector which facilitates phase reconstruction. The uniqueness theorem is derived using the theory of entire functions. Unlike previous results based on exact solution formulae, it is valid for arbitrary complex objects and requires intensity measurements only at a single detector distance and illumination wavelength. We also deduce a uniqueness criterion for phase contrast tomography, which may be applied to resolve the three-dimensional structure of micro- and nano-scale samples. Moreover, our results may have some significance to electronic imaging methods due to the equivalence of paraxial wave propagation and Schrödinger’s equation.

  3. A Broad-Band Phase-Contrast Wave-Front Sensor

    NASA Technical Reports Server (NTRS)

    Bloemhof, Eric; Wallace, J. Kent

    2005-01-01

    A broadband phase-contrast wave-front sensor has been proposed as a real-time wave-front sensor in an adaptive-optics system. The proposed sensor would offer an alternative to the Shack-Hartmann wave-front sensors now used in high-order adaptive-optics systems of some astronomical telescopes. Broadband sensing gives higher sensitivity than does narrow-band sensing, and it appears that for a given bandwidth, the sensitivity of the proposed phase-contrast sensor could exceed that of a Shack-Hartmann sensor. Relative to a Shack-Hartmann sensor, the proposed sensor may be optically and mechanically simpler. As described below, an important element of the principle of operation of a phase-contrast wave-front sensor is the imposition of a 90deg phase shift between diffracted and undiffracted parts of the same light beam. In the proposed sensor, this phase shift would be obtained by utilizing the intrinsic 90 phase shift between the transmitted and reflected beams in an ideal (thin, symmetric) beam splitter. This phase shift can be characterized as achromatic or broadband because it is 90deg at every wavelength over a broad wavelength range.

  4. Performance analysis of quantitative phase retrieval method in Zernike phase contrast X-ray microscopy

    NASA Astrophysics Data System (ADS)

    Heng, Chen; Kun, Gao; Da-Jiang, Wang; Li, Song; Zhi-Li, Wang

    2016-02-01

    Since the invention of Zernike phase contrast method in 1930, it has been widely used in optical microscopy and more recently in X-ray microscopy. Considering the image contrast is a mixture of absorption and phase information, we recently have proposed and demonstrated a method for quantitative phase retrieval in Zernike phase contrast X-ray microscopy. In this contribution, we analyze the performance of this method at different photon energies. Intensity images of PMMA samples are simulated at 2.5 keV and 6.2 keV, respectively, and phase retrieval is performed using the proposed method. The results demonstrate that the proposed phase retrieval method is applicable over a wide energy range. For weakly absorbing features, the optimal photon energy is 2.5 keV, from the point of view of image contrast and accuracy of phase retrieval. On the other hand, in the case of strong absorption objects, a higher photon energy is preferred to reduce the error of phase retrieval. These results can be used as guidelines to perform quantitative phase retrieval in Zernike phase contrast X-ray microscopy with the proposed method. Supported by the State Key Project for Fundamental Research (2012CB825801), National Natural Science Foundation of China (11475170, 11205157 and 11179004) and Anhui Provincial Natural Science Foundation (1508085MA20).

  5. Helical X-ray phase-contrast computed tomography without phase stepping.

    PubMed

    Marschner, M; Willner, M; Potdevin, G; Fehringer, A; Noël, P B; Pfeiffer, F; Herzen, J

    2016-01-01

    X-ray phase-contrast computed tomography (PCCT) using grating interferometry provides enhanced soft-tissue contrast. The possibility to use standard polychromatic laboratory sources enables an implementation into a clinical setting. Thus, PCCT has gained significant attention in recent years. However, phase-contrast CT scans still require significantly increased measurement times in comparison to conventional attenuation-based CT imaging. This is mainly due to a time-consuming stepping of a grating, which is necessary for an accurate retrieval of the phase information. In this paper, we demonstrate a novel scan technique, which directly allows the determination of the phase signal without a phase-stepping procedure. The presented work is based on moiré fringe scanning, which allows fast data acquisition in radiographic applications such as mammography or in-line product analysis. Here, we demonstrate its extension to tomography enabling a continuous helical sample rotation as routinely performed in clinical CT systems. Compared to standard phase-stepping techniques, the proposed helical fringe-scanning procedure enables faster measurements, an extended field of view and relaxes the stability requirements of the system, since the gratings remain stationary. Finally, our approach exceeds previously introduced methods by not relying on spatial interpolation to acquire the phase-contrast signal. PMID:27052368

  6. Contrast enhancement of propagation based X-ray phase contrast imaging

    NASA Astrophysics Data System (ADS)

    Pan, Adam; Xu, Ling; Petruccelli, Jon C.; Gupta, Rajiv; Barbastathis, George

    2014-09-01

    We demonstrate a quantitative X-ray phase contrast imaging (XPCI) technique derived from propagation dependent phase change. We assume that the absorption and phase components are correlated and solve the Transport of Intensity Equation (TIE). The experimental setup is simple compared to other XPCI techniques; the only requirements are a micro-focus X-ray source with sufficient temporal coherence and an X-ray detector of sufficient spatial resolution. This method was demonstrated in three scenarios, the first of which entails identification of an index-matched sphere. A rubber and nylon sphere were immersed in water and imaged. While the rubber sphere could be plainly seen on a radiograph, the nylon sphere was only visible in the phase reconstruction. Next, the technique was applied to differentiating liquid samples. In this scenario, three liquid samples (acetone, water, and hydrogen peroxide) were analyzed using both conventional computed tomography (CT) and phase contrast CT. While conventional CT was capable of differentiating between acetone and the other two liquids, it failed to distinguish between water and hydrogen peroxide; only phase CT was capable of differentiating all three samples. Finally, the technique was applied to CT imaging of a human artery specimen with extensive atherosclerotic plaque. This scenario demonstrated the increased sensitivity to soft tissue compared to conventional CT; it also uncovered some drawbacks of the method, which will be the target of future work. In all cases, the signal-to-noise ratio of phase contrast was greatly enhanced relative to conventional attenuation-based imaging.

  7. Reverse projection retrieval in edge illumination x-ray phase contrast computed tomography

    NASA Astrophysics Data System (ADS)

    Hagen, Charlotte K.; Endrizzi, Marco; Diemoz, Paul C.; Olivo, Alessandro

    2016-06-01

    Edge illumination (EI) x-ray phase contrast computed tomography (CT) can provide three-dimensional distributions of the real and imaginary parts of the complex refractive index (n=1-δ +\\text{i}β ) of the sample. Phase retrieval, i.e. the separation of attenuation and refraction data from projections that contain a combination of both, is a key step in the image reconstruction process. In EI-based x-ray phase contrast CT, this is conventionally performed on the basis of two projections acquired in opposite illumination configurations (i.e. with different positions of the pre-sample mask) at each CT angle. Displacing the pre-sample mask at each projection makes the scan susceptible to motor-induced misalignment and prevents a continuous sample rotation. We present an alternative method for the retrieval of attenuation and refraction data that does not require repositioning the pre-sample mask. The method is based on the reverse projection relation published by Zhu et al (2010 Proc. Natl Acad. Sci. USA 107 13576–81) for grating interferometry-based x-ray phase contrast CT. We use this relation to derive a simplified acquisition strategy that allows acquiring data with a continuous sample rotation, which can reduce scan time when combined with a fast read-out detector. Besides discussing the theory and the necessary alignment of the experimental setup, we present tomograms obtained with reverse projection retrieval and demonstrate their agreement with those obtained with the conventional EI retrieval.

  8. The application of phase contrast X-ray techniques for imaging Li-ion battery electrodes

    NASA Astrophysics Data System (ADS)

    Eastwood, D. S.; Bradley, R. S.; Tariq, F.; Cooper, S. J.; Taiwo, O. O.; Gelb, J.; Merkle, A.; Brett, D. J. L.; Brandon, N. P.; Withers, P. J.; Lee, P. D.; Shearing, P. R.

    2014-04-01

    In order to accelerate the commercialization of fuel cells and batteries across a range of applications, an understanding of the mechanisms by which they age and degrade at the microstructural level is required. Here, the most widely commercialized Li-ion batteries based on porous graphite based electrodes which de/intercalate Li+ ions during charge/discharge are studied by two phase contrast enhanced X-ray imaging modes, namely in-line phase contrast and Zernike phase contrast at the micro (synchrotron) and nano (laboratory X-ray microscope) level, respectively. The rate of charge cycling is directly dependent on the nature of the electrode microstructure, which are typically complex multi-scale 3D geometries with significant microstructural heterogeneities. We have been able to characterise the porosity and the tortuosity by micro-CT as well as the morphology of 5 individual graphite particles by nano-tomography finding that while their volume varied significantly their sphericity was surprisingly similar. The volume specific surface areas of the individual grains measured by nano-CT are significantly larger than the total volume specific surface area of the electrode from the micro-CT imaging, which can be attributed to the greater particle surface area visible at higher resolution.

  9. Quantitative tracking of tumor cells in phase-contrast microscopy exploiting halo artifact pattern

    NASA Astrophysics Data System (ADS)

    Kang, Mi-Sun; Song, Soo-Min; Lee, Hana; Kim, Myoung-Hee

    2012-03-01

    Tumor cell morphology is closely related to its invasiveness characteristics and migratory behaviors. An invasive tumor cell has a highly irregular shape, whereas a spherical cell is non-metastatic. Thus, quantitative analysis of cell features is crucial to determine tumor malignancy or to test the efficacy of anticancer treatment. We use phase-contrast microscopy to analyze single cell morphology and to monitor its change because it enables observation of long-term activity of living cells without photobleaching and phototoxicity, which is common in other fluorescence-labeled microscopy. Despite this advantage, there are image-level drawbacks to phase-contrast microscopy, such as local light effect and contrast interference ring, among others. Thus, we first applied a local filter to compensate for non-uniform illumination. Then, we used intensity distribution information to detect the cell boundary. In phase-contrast microscopy images, the cell normally appears as a dark region surrounded by a bright halo. As the halo artifact around the cell body is minimal and has an asymmetric diffusion pattern, we calculated the cross-sectional plane that intersected the center of each cell and was orthogonal to the first principal axis. Then, we extracted the dark cell region by level set. However, a dense population of cultured cells still rendered single-cell analysis difficult. Finally, we measured roundness and size to classify tumor cells into malignant and benign groups. We validated segmentation accuracy by comparing our findings with manually obtained results.

  10. Phase-contrast x-ray imaging of the breast: recent developments towards clinics

    NASA Astrophysics Data System (ADS)

    Coan, P.; Bravin, A.; Tromba, G.

    2013-12-01

    Breast imaging is one of the most demanding and delicate radiological applications. Mammography is the primary diagnosis tool in breast cancer detection and national screening programmes. Recognition of breast cancer depends on the detection of subtle architectural distortion, masses showing near normal breast tissue density, skin thickening and microcalcifications. The small differences in attenuation of x-rays between normal and malignant tissue result in low contrast and make cancer detection difficult in conventional x-ray absorption mammography. Because of these challenging aspects, breast imaging has been the first and most explored diagnostic field in phase-contrast imaging research. This novel imaging method has been extensively used and has demonstrated a unique capability in producing high-contrast and sensitive images at quasi-histological resolution. The most recent and significant technical developments are introduced and results obtained by the application of various phase-contrast imaging techniques for breast imaging are reported. The first phase-contrast mammography clinical trials project is also presented and the short- and long-term future perspectives of the method are discussed.

  11. Simple broadband implementation of a phase contrast wavefront sensor for adaptive optics

    NASA Technical Reports Server (NTRS)

    Bloemhof, E. E.; Wallace, J. K.

    2004-01-01

    The most critical element of an adaptive optics system is its wavefront sensor, which must measure the closed-loop difference between the corrected wavefront and an ideal template at high speed, in real time, over a dense sampling of the pupil. Most high-order systems have used Shack-Hartmann wavefront sensors, but a novel approach based on Zernike's phase contrast principle appears promising. In this paper we discuss a simple way to achromatize such a phase contrast wavefront sensor, using the pi/2 phase difference between reflected and transmitted rays in a thin, symmetric beam splitter. We further model the response at a range of wavelengths to show that the required transverse dimension of the focal-plane phase-shifting spot, nominally lambda/D, may not be very sensitive to wavelength, and so in practice additional optics to introduce wavelength-dependent transverse magnification achromatizing this spot diameter may not be required. A very simple broadband implementation of the phase contrast wavefront sensor results.

  12. X-ray computed tomography of wood-adhesive bondlines: Attenuation and phase-contrast effects

    SciTech Connect

    Paris, Jesse L.; Kamke, Frederick A.; Xiao, Xianghui

    2015-07-29

    Microscale X-ray computed tomography (XCT) is discussed as a technique for identifying 3D adhesive distribution in wood-adhesive bondlines. Visualization and material segmentation of the adhesives from the surrounding cellular structures require sufficient gray-scale contrast in the reconstructed XCT data. Commercial wood-adhesive polymers have similar chemical characteristics and density to wood cell wall polymers and therefore do not provide good XCT attenuation contrast in their native form. Here, three different adhesive types, namely phenol formaldehyde, polymeric diphenylmethane diisocyanate, and a hybrid polyvinyl acetate, are tagged with iodine such that they yield sufficient X-ray attenuation contrast. However, phase-contrast effects at material edges complicate image quality and segmentation in XCT data reconstructed with conventional filtered backprojection absorption contrast algorithms. A quantitative phase retrieval algorithm, which isolates and removes the phase-contrast effect, was demonstrated. The paper discusses and illustrates the balance between material X-ray attenuation and phase-contrast effects in all quantitative XCT analyses of wood-adhesive bondlines.

  13. Quantitative measurement of ultrasound pressure field by optical phase contrast method and acoustic holography

    NASA Astrophysics Data System (ADS)

    Oyama, Seiji; Yasuda, Jun; Hanayama, Hiroki; Yoshizawa, Shin; Umemura, Shin-ichiro

    2016-07-01

    A fast and accurate measurement of an ultrasound field with various exposure sequences is necessary to ensure the efficacy and safety of various ultrasound applications in medicine. The most common method used to measure an ultrasound pressure field, that is, hydrophone scanning, requires a long scanning time and potentially disturbs the field. This may limit the efficiency of developing applications of ultrasound. In this study, an optical phase contrast method enabling fast and noninterfering measurements is proposed. In this method, the modulated phase of light caused by the focused ultrasound pressure field is measured. Then, a computed tomography (CT) algorithm used to quantitatively reconstruct a three-dimensional (3D) pressure field is applied. For a high-intensity focused ultrasound field, a new approach that combines the optical phase contrast method and acoustic holography was attempted. First, the optical measurement of focused ultrasound was rapidly performed over the field near a transducer. Second, the nonlinear propagation of the measured ultrasound was simulated. The result of the new approach agreed well with that of the measurement using a hydrophone and was improved from that of the phase contrast method alone with phase unwrapping.

  14. X-ray computed tomography of wood-adhesive bondlines: Attenuation and phase-contrast effects

    DOE PAGESBeta

    Paris, Jesse L.; Kamke, Frederick A.; Xiao, Xianghui

    2015-07-29

    Microscale X-ray computed tomography (XCT) is discussed as a technique for identifying 3D adhesive distribution in wood-adhesive bondlines. Visualization and material segmentation of the adhesives from the surrounding cellular structures require sufficient gray-scale contrast in the reconstructed XCT data. Commercial wood-adhesive polymers have similar chemical characteristics and density to wood cell wall polymers and therefore do not provide good XCT attenuation contrast in their native form. Here, three different adhesive types, namely phenol formaldehyde, polymeric diphenylmethane diisocyanate, and a hybrid polyvinyl acetate, are tagged with iodine such that they yield sufficient X-ray attenuation contrast. However, phase-contrast effects at material edgesmore » complicate image quality and segmentation in XCT data reconstructed with conventional filtered backprojection absorption contrast algorithms. A quantitative phase retrieval algorithm, which isolates and removes the phase-contrast effect, was demonstrated. The paper discusses and illustrates the balance between material X-ray attenuation and phase-contrast effects in all quantitative XCT analyses of wood-adhesive bondlines.« less

  15. Experimental results from a preclinical X-ray phase-contrast CT scanner

    PubMed Central

    Tapfer, Arne; Bech, Martin; Velroyen, Astrid; Meiser, Jan; Mohr, Jürgen; Walter, Marco; Schulz, Joachim; Pauwels, Bart; Bruyndonckx, Peter; Liu, Xuan; Sasov, Alexander; Pfeiffer, Franz

    2012-01-01

    To explore the future clinical potential of improved soft-tissue visibility with grating-based X-ray phase contrast (PC), we have developed a first preclinical computed tomography (CT) scanner featuring a rotating gantry. The main challenge in the transition from previous bench-top systems to a preclinical scanner are phase artifacts that are caused by minimal changes in the grating alignment during gantry rotation. In this paper, we present the first experimental results from the system together with an adaptive phase recovery method that corrects for these phase artifacts. Using this method, we show that the scanner can recover quantitatively accurate Hounsfield units in attenuation and phase. Moreover, we present a first tomography scan of biological tissue with complementary information in attenuation and phase contrast. The present study hence demonstrates the feasibility of grating-based phase contrast with a rotating gantry for the first time and paves the way for future in vivo studies on small animal disease models (in the mid-term future) and human diagnostics applications (in the long-term future). PMID:23019354

  16. Phantom study based on a high-energy in-line phase contrast tomosynthesis prototype

    NASA Astrophysics Data System (ADS)

    Wu, Di; Yan, Aimin; Li, Yuhua; Chen, Wei R.; Wu, Xizeng; Liu, Hong

    2014-02-01

    The objective of this research is to demonstrate an in-line phase contrast tomosynthesis prototype operated under high x-ray tube voltage, and a phantom study was conducted to characterize the potentials of this system. The prototype is based on an in-line phase contrast system accompanying with digital tomosynthesis imaging mechanism; and the tube voltage is operated at 120 kVp. A phantom study was conducted by using a custom-designed fish bone phantom to demonstrate the ability of this imaging system in edge enhancement and noise suppression. As the result, edge enhancement could be observed on the in-plane slices by plotting and comparing the intensity profiles with DTS images. As employing phase retrieval method onto the original angular projections could dramatically improve the image quality in edge enhancement, 3D imaging box was preliminarily constructed by using reconstructed in-plane slices acquired with PAD phase retrieval. As expected, high-energy in-line phase contrast tomosynthesis imaging system shows its potentials in edge enhancement and noise suppression by introducing phase retrieval method. Dose studies and perfecting photon energies and phantom designs will be our future interest.

  17. Phase contrast imaging using a micro focus x-ray source

    NASA Astrophysics Data System (ADS)

    Zhou, Wei; Majidi, Keivan; Brankov, Jovan G.

    2014-09-01

    Phase contrast x-ray imaging, a new technique to increase the imaging contrast for the tissues with close attenuation coefficients, has been studied since mid 1990s. This technique reveals the possibility to show the clear details of the soft tissues and tumors in small scale resolution. A compact and low cost phase contrast imaging system using a conventional x-ray source is described in this paper. Using the conventional x-ray source is of great importance, because it provides the possibility to use the method in hospitals and clinical offices. Simple materials and components are used in the setup to keep the cost in a reasonable and affordable range.Tungsten Kα1 line with the photon energy 59.3 keV was used for imaging. Some of the system design details are discussed. The method that was used to stabilize the system is introduced. A chicken thigh bone tissue sample was used for imaging followed by the image quality, image acquisition time and the potential clinical application discussion. High energy x-ray beam can be used in phase contrast imaging. Therefore the radiation dose to the patients can be greatly decreased compared to the traditional x-ray radiography.

  18. Helical X-ray phase-contrast computed tomography without phase stepping

    NASA Astrophysics Data System (ADS)

    Marschner, M.; Willner, M.; Potdevin, G.; Fehringer, A.; Noël, P. B.; Pfeiffer, F.; Herzen, J.

    2016-04-01

    X-ray phase-contrast computed tomography (PCCT) using grating interferometry provides enhanced soft-tissue contrast. The possibility to use standard polychromatic laboratory sources enables an implementation into a clinical setting. Thus, PCCT has gained significant attention in recent years. However, phase-contrast CT scans still require significantly increased measurement times in comparison to conventional attenuation-based CT imaging. This is mainly due to a time-consuming stepping of a grating, which is necessary for an accurate retrieval of the phase information. In this paper, we demonstrate a novel scan technique, which directly allows the determination of the phase signal without a phase-stepping procedure. The presented work is based on moiré fringe scanning, which allows fast data acquisition in radiographic applications such as mammography or in-line product analysis. Here, we demonstrate its extension to tomography enabling a continuous helical sample rotation as routinely performed in clinical CT systems. Compared to standard phase-stepping techniques, the proposed helical fringe-scanning procedure enables faster measurements, an extended field of view and relaxes the stability requirements of the system, since the gratings remain stationary. Finally, our approach exceeds previously introduced methods by not relying on spatial interpolation to acquire the phase-contrast signal.

  19. A phase contrast cytomorphometric study of squames of normal oral mucosa and oral leukoplakia: Original study

    PubMed Central

    Nadaf, Afreen; Bavle, Radhika M; Thambiah, Lalita J; Paremala, K; Sudhakara, M; Soumya, M

    2014-01-01

    Oral leukoplakia represents the most common potentially malignant oral disorder, representing 85% of such lesions. The worldwide prevalence of leukoplakia is 1.5- 4.3%. Leukoplakia is often associated with carcinogenic exposures, such as from use of tobacco, alcohol or betel nut. The level of risk for malignant transformation of leukoplakia is associated with lesion histology. The overall malignant transformation rates for dysplastic lesions range from 11% to 36%, depending on the length of follow-up. Exfoliative cytology is a simple and minimally invasive method. Phase contrast microscope, an essential tool in the field of biology and medical research provides improved discrimination of cellular details. Aims: To study and compare the cytomorphological and cytomorphometric features of squames obtained from the mucosa of normal individuals, tobacco habituates with and without clinically evident leukoplakia. To assess the role of phase contrast microscopy as an alternative and easy method of cytological evaluation of wet and unstained smears. Materials and Methods: Fifty cases from each group were taken. Fixed, unstained smears were viewed under phase contrast microscope and were evaluated morphologically and morphometrically for nuclear and cellular diameters. Results: The study showed a significant increase in the mean nuclear diameter and decrease in the mean cellular diameter. Conclusion: Cytomorphometric changes could be the earliest indicators of cellular alterations. This indicates that there could be a cause-effect relationship between tobacco and quantitative alterations. PMID:25364176

  20. High-Resolution and Quantitative X-Ray Phase-Contrast Tomography for Mouse Brain Research

    PubMed Central

    Xi, Yan; Lin, Xiaojie; Yuan, Falei; Yang, Guo-Yuan; Zhao, Jun

    2015-01-01

    Imaging techniques for visualizing cerebral vasculature and distinguishing functional areas are essential and critical to the study of various brain diseases. In this paper, with the X-ray phase-contrast imaging technique, we proposed an experiment scheme for the ex vivo mouse brain study, achieving both high spatial resolution and improved soft-tissue contrast. This scheme includes two steps: sample preparation and volume reconstruction. In the first step, we use heparinized saline to displace the blood inside cerebral vessels and then replace it with air making air-filled mouse brain. After sample preparation, X-ray phase-contrast tomography is performed to collect the data for volume reconstruction. Here, we adopt a phase-retrieval combined filtered backprojection method to reconstruct its three-dimensional structure and redesigned the reconstruction kernel. To evaluate its performance, we carried out experiments at Shanghai Synchrotron Radiation Facility. The results show that the air-tissue structured cerebral vasculatures are highly visible with propagation-based phase-contrast imaging and can be clearly resolved in reconstructed cross-images. Besides, functional areas, such as the corpus callosum, corpus striatum, and nuclei, are also clearly resolved. The proposed method is comparable with hematoxylin and eosin staining method but represents the studied mouse brain in three dimensions, offering a potential powerful tool for the research of brain disorders. PMID:26576198

  1. High-energy x-ray grating-based phase-contrast radiography of human anatomy

    NASA Astrophysics Data System (ADS)

    Horn, Florian; Hauke, Christian; Lachner, Sebastian; Ludwig, Veronika; Pelzer, Georg; Rieger, Jens; Schuster, Max; Seifert, Maria; Wandner, Johannes; Wolf, Andreas; Michel, Thilo; Anton, Gisela

    2016-03-01

    X-ray grating-based phase-contrast Talbot-Lau interferometry is a promising imaging technology that has the potential to raise soft tissue contrast in comparison to conventional attenuation-based imaging. Additionally, it is sensitive to attenuation, refraction and scattering of the radiation and thus provides complementary and otherwise inaccessible information due to the dark-field image, which shows the sub-pixel size granularity of the measured object. Until recent progress the method has been mainly limited to photon energies below 40 keV. Scaling the method to photon energies that are sufficient to pass large and spacious objects represents a challenging task. This is caused by increasing demands regarding the fabrication process of the gratings and the broad spectra that come along with the use of polychromatic X-ray sources operated at high acceleration voltages. We designed a setup that is capable to reach high visibilities in the range from 50 to 120 kV. Therefore, spacious and dense parts of the human body with high attenuation can be measured, such as a human knee. The authors will show investigations on the resulting attenuation, differential phase-contrast and dark-field images. The images experimentally show that X-ray grating-based phase-contrast radiography is feasible with highly absorbing parts of the human body containing massive bones.

  2. Differential phase contrast with a segmented detector in a scanning X-ray microprobe

    PubMed Central

    Hornberger, B.; de Jonge, M. D.; Feser, M.; Holl, P.; Holzner, C.; Jacobsen, C.; Legnini, D.; Paterson, D.; Rehak, P.; Strüder, L.; Vogt, S.

    2008-01-01

    Scanning X-ray microprobes are unique tools for the nanoscale investigation of specimens from the life, environmental, materials and other fields of sciences. Typically they utilize absorption and fluorescence as contrast mechanisms. Phase contrast is a complementary technique that can provide strong contrast with reduced radiation dose for weakly absorbing structures in the multi-keV range. In this paper the development of a segmented charge-integrating silicon detector which provides simultaneous absorption and differential phase contrast is reported. The detector can be used together with a fluorescence detector for the simultaneous acquisition of transmission and fluorescence data. It can be used over a wide range of photon energies, photon rates and exposure times at third-generation synchrotron radiation sources, and is currently operating at two beamlines at the Advanced Photon Source. Images obtained at around 2 keV and 10 keV demonstrate the superiority of phase contrast over absorption for specimens composed of light elements. PMID:18552427

  3. Abdominal sounds

    MedlinePlus

    ... during sleep. They also occur normally for a short time after the use of certain medicines and after abdominal surgery. Decreased or absent bowel sounds often indicate constipation. Increased ( hyperactive ) bowel sounds ...

  4. Abdominal MRI

    MedlinePlus

    ... provider if you have: Artificial heart valves Brain aneurysm clips Heart defibrillator or pacemaker Inner ear (cochlear) ... which the test may be performed: Abdominal aortic aneurysm Atheroembolic renal disease Carcinoma of the renal pelvis ...

  5. Abdominal pain

    MedlinePlus

    ... threatening conditions, such as colon cancer or early appendicitis , may only cause mild pain or no pain. ... Food poisoning Stomach flu Other possible causes include: Appendicitis Abdominal aortic aneurysm (bulging and weakening of the ...

  6. Abdominal Pain

    MedlinePlus

    ... can help the overall situation for the child. Teaching kids self-hypnosis [8] or guided imagery [8a] ... related topics? Functional Abdominal Pain (English, French or Spanish)—from The North American Society for Pediatric Gastroenterology, ...

  7. Grating-based phase contrast tomosynthesis imaging: Proof-of-concept experimental studies

    SciTech Connect

    Li, Ke; Ge, Yongshuai; Garrett, John; Bevins, Nicholas; Zambelli, Joseph; Chen, Guang-Hong

    2014-01-15

    Purpose: This paper concerns the feasibility of x-ray differential phase contrast (DPC) tomosynthesis imaging using a grating-based DPC benchtop experimental system, which is equipped with a commercial digital flat-panel detector and a medical-grade rotating-anode x-ray tube. An extensive system characterization was performed to quantify its imaging performance. Methods: The major components of the benchtop system include a diagnostic x-ray tube with a 1.0 mm nominal focal spot size, a flat-panel detector with 96 μm pixel pitch, a sample stage that rotates within a limited angular span of ±30°, and a Talbot-Lau interferometer with three x-ray gratings. A total of 21 projection views acquired with 3° increments were used to reconstruct three sets of tomosynthetic image volumes, including the conventional absorption contrast tomosynthesis image volume (AC-tomo) reconstructed using the filtered-backprojection (FBP) algorithm with the ramp kernel, the phase contrast tomosynthesis image volume (PC-tomo) reconstructed using FBP with a Hilbert kernel, and the differential phase contrast tomosynthesis image volume (DPC-tomo) reconstructed using the shift-and-add algorithm. Three inhouse physical phantoms containing tissue-surrogate materials were used to characterize the signal linearity, the signal difference-to-noise ratio (SDNR), the three-dimensional noise power spectrum (3D NPS), and the through-plane artifact spread function (ASF). Results: While DPC-tomo highlights edges and interfaces in the image object, PC-tomo removes the differential nature of the DPC projection data and its pixel values are linearly related to the decrement of the real part of the x-ray refractive index. The SDNR values of polyoxymethylene in water and polystyrene in oil are 1.5 and 1.0, respectively, in AC-tomo, and the values were improved to 3.0 and 2.0, respectively, in PC-tomo. PC-tomo and AC-tomo demonstrate equivalent ASF, but their noise characteristics quantified by the 3D NPS

  8. Simultaneous amplitude-contrast and phase-contrast surface plasmon resonance imaging by use of digital holography

    PubMed Central

    Li, Shiping; Zhong, Jingang

    2012-01-01

    The surface plasmon resonance imaging technique provides a tool that allows high-throughput analysis and real-time kinetic measurement. A simultaneous amplitude-contrast and phase-contrast surface plasmon resonance imaging method is presented. The amplitude-contrast and phase-contrast images are simultaneously obtained by use of digital holography. The detection sensitivity of amplitude-contrast imaging and phase-contrast imaging can compensate for each other. Thus, the detectable sample components may cover a wider range of refractive index values for the simultaneous amplitude-contrast and phase-contrast imaging method than for the phase-contrast imaging method or amplitude-contrast imaging method. A detailed description of the theory and an experiment of monitoring the evaporation process of a drop of NaCl injection in real time are presented. In addition, the amplitude-contrast image has less coherent noise by digital holography. PMID:23243569

  9. The effect of respiratory cycle and radiation beam-on timing on the dose distribution of free-breathing breast treatment using dynamic IMRT

    SciTech Connect

    Ding Chuxiong; Li Xiang; Huq, M. Saiful; Saw, Cheng B.; Heron, Dwight E.; Yue, Ning J.

    2007-09-15

    In breast cancer treatment, intensity-modulated radiation therapy (IMRT) can be utilized to deliver more homogeneous dose to target tissues to minimize the cosmetic impact. We have investigated the effect of the respiratory cycle and radiation beam-on timing on the dose distribution in free-breathing dynamic breast IMRT treatment. Six patients with early stage cancer of the left breast were included in this study. A helical computed tomography (CT) scan was acquired for treatment planning. A four-dimensional computed tomography (4D CT) scan was obtained right after the helical CT scan with little or no setup uncertainty to simulate patient respiratory motion. After optimizing based on the helical CT scan, the sliding-window dynamic multileaf collimator (DMLC) leaf sequence was segmented into multiple sections that corresponded to various respiratory phases per respiratory cycle and radiation beam-on timing. The segmented DMLC leaf sections were grouped according to respiratory phases and superimposed over the radiation fields of corresponding 4D CT image set. Dose calculation was then performed for each phase of the 4D CT scan. The total dose distribution was computed by accumulating the contribution of dose from each phase to every voxel in the region of interest. This was tracked by a deformable registration program throughout all of the respiratory phases of the 4D CT scan. A dose heterogeneity index, defined as the ratio between (D{sub 20}-D{sub 80}) and the prescription dose, was introduced to numerically illustrate the impact of respiratory motion on the dose distribution of treatment volume. A respiratory cycle range of 4-8 s and randomly distributed beam-on timing were assigned to simulate the patient respiratory motion during the free-breathing treatment. The results showed that the respiratory cycle period and radiation beam-on timing presented limited impact on the target dose coverage and slightly increased the target dose heterogeneity. This motion

  10. SU-E-T-426: Dose Delivery Accuracy in Breast Field Junction for Free Breath and Deep Inspiration Breath Hold Techniques

    SciTech Connect

    Epstein, D; Shekel, E; Levin, D

    2014-06-01

    Purpose: The purpose of this work was to verify the accuracy of the dose distribution along the field junction in a half beam irradiation technique for breast cancer patients receiving radiation to the breast or chest wall (CW) and the supraclavicular LN region for both free breathing and deep inspiration breath hold (DIBH) technique. Methods: We performed in vivo measurements for nine breast cancer patients receiving radiation to the breast/CW and to the supraclavicular LN region. Six patients were treated to the left breast/CW using DIBH technique and three patients were treated to the right breast/CW in free breath. We used five microMOSFET dosimeters: three located along the field junction, one located 1 cm above the junction and the fifth microMOSFET located 1 cm below the junction. We performed consecutive measurements over several days for each patient and compared the measurements to the TPS calculation (Eclipse, Varian™). Results: The calculated and measured doses along the junction were 0.97±0.08 Gy and 1.02±0.14 Gy, respectively. Above the junction calculated and measured doses were 0.91±0.08 Gy and 0.98±0.09 Gy respectively, and below the junction calculated and measured doses were 1.70±0.15 Gy and 1.61±0.09 Gy, respectively. All differences were not statistically significant. When comparing calculated and measured doses for DIBH patients only, there was still no statistically significant difference between values for all dosimeter locations. Analysis was done using the Mann-Whitney Rank-Sum Test. Conclusion: We found excellent correlation between calculated doses from the TPS and measured skin doses at the junction of several half beam fields. Even for the DIBH technique, where there is more potential for variance due to depth of breath, there is no over or underdose along the field junction. This correlation validates the TPS, as well an accurate, reproducible patient setup.

  11. On detector linearity and precision of beam shift detection for quantitative differential phase contrast applications.

    PubMed

    Zweck, Josef; Schwarzhuber, Felix; Wild, Johannes; Galioit, Vincent

    2016-09-01

    Differential phase contrast is a STEM imaging mode where minute sideways deflections of the electron probe are monitored, usually by using a position sensitive device (Chapman, 1984 [1]; Lohr et al., 2012 [2]) or, alternatively in some cases, a fast camera (Müller et al., 2012 [3,4]; Yang et al., 2015 [5]; Pennycook et al., 2015 [6]) as a pixelated detector. While traditionally differential phase contrast electron microscopy was mainly focused on investigations of micro-magnetic domain structures and their specific features, such as domain wall widths, etc. (Chapman, 1984 [1]; Chapman et al., 1978, 1981, 1985 [7-9]; Sannomiya et al., 2004 [10]), its usage has recently been extended to mesoscopic (Lohr et al., 2012, 2016 [2,12]; Bauer et al., 2014 [11]; Shibata et al., 2015 [13]) and nano-scale electric fields (Shibata et al., 2012 [14]; Mueller et al., 2014 [15]). In this paper, the various interactions which can cause a beam deflection are reviewed and expanded by two so far undiscussed mechanisms which may be important for biological applications. As differential phase contrast microscopy strongly depends on the ability to detect minute beam deflections we first treat the linearity problem for an annular four quadrant detector and then determine the factors which limit the minimum measurable deflection angle, such as S/N ratio, current density, dwell time and detector geometry. Knowing these factors enables the experimenter to optimize the set-up for optimum performance of the microscope and to get a clear figure for the achievable field resolution error margins. PMID:27376783

  12. Quantitative analysis of contrast to noise ratio using a phase contrast x-ray imaging prototype

    NASA Astrophysics Data System (ADS)

    Ghani, Muhammad U.; Wu, Di; Li, Yuhua; Kang, Minhua; Chen, Wei R.; Wu, Xizeng; Liu, Hong

    2013-02-01

    The purpose of this study was to determine the Contrast to Noise Ratio (CNR) of the x-ray images taken with the phase contrast imaging mode and compare them with the CNR of the images taken under the conventional mode. For each mode, three images were taken under three exposure conditions of 100 kVp (2.8mAs), 120 kVp (1.9mAs) and 140kVp (1.42mAs). A 1.61cm thick contrast detail phantom was used as an imaging object. For phase contrast, the source to image detector distance (SID) was 182.88 cm and the source to object (SOD) distance was 73.15 cm. The SOD was the same as SID in the conventional imaging mode. A computed radiography (CR) plate was used as a detector and the output CR images were converted to linear form in relation with the incident x-ray exposure. To calculate CNR, an image processing software was used to determine the mean pixel value and the standard deviation of the pixels in the region of interest (ROI) and in the nearby background around ROI. At any given exposure condition investigated in this study, the CNR values for the phase contrast images were better as compared to the corresponding conventional mode images. The superior image quality in terms of CNR is contributed by the phase-shifts resulted contrast, as well as the reduced scatters due to the air gap between the object and the detector.

  13. Contrast-to-noise ratio optimization for a prototype phase-contrast computed tomography scanner.

    PubMed

    Müller, Mark; Yaroshenko, Andre; Velroyen, Astrid; Bech, Martin; Tapfer, Arne; Pauwels, Bart; Bruyndonckx, Peter; Sasov, Alexander; Pfeiffer, Franz

    2015-12-01

    In the field of biomedical X-ray imaging, novel techniques, such as phase-contrast and dark-field imaging, have the potential to enhance the contrast and provide complementary structural information about a specimen. In this paper, a first prototype of a preclinical X-ray phase-contrast CT scanner based on a Talbot-Lau interferometer is characterized. We present a study of the contrast-to-noise ratios for attenuation and phase-contrast images acquired with the prototype scanner. The shown results are based on a series of projection images and tomographic data sets of a plastic phantom in phase and attenuation-contrast recorded with varying acquisition settings. Subsequently, the signal and noise distribution of different regions in the phantom were determined. We present a novel method for estimation of contrast-to-noise ratios for projection images based on the cylindrical geometry of the phantom. Analytical functions, representing the expected signal in phase and attenuation-contrast for a circular object, are fitted to individual line profiles of the projection data. The free parameter of the fit function is used to estimate the contrast and the goodness of the fit is determined to assess the noise in the respective signal. The results depict the dependence of the contrast-to-noise ratios on the applied source voltages, the number of steps of the phase stepping routine, and the exposure times for an individual step. Moreover, the influence of the number of projection angles on the image quality of CT slices is investigated. Finally, the implications for future imaging purposes with the scanner are discussed. PMID:26724040

  14. Contrast-to-noise ratio optimization for a prototype phase-contrast computed tomography scanner

    SciTech Connect

    Müller, Mark Yaroshenko, Andre; Velroyen, Astrid; Tapfer, Arne; Bech, Martin; Pauwels, Bart; Bruyndonckx, Peter; Sasov, Alexander; Pfeiffer, Franz

    2015-12-15

    In the field of biomedical X-ray imaging, novel techniques, such as phase-contrast and dark-field imaging, have the potential to enhance the contrast and provide complementary structural information about a specimen. In this paper, a first prototype of a preclinical X-ray phase-contrast CT scanner based on a Talbot-Lau interferometer is characterized. We present a study of the contrast-to-noise ratios for attenuation and phase-contrast images acquired with the prototype scanner. The shown results are based on a series of projection images and tomographic data sets of a plastic phantom in phase and attenuation-contrast recorded with varying acquisition settings. Subsequently, the signal and noise distribution of different regions in the phantom were determined. We present a novel method for estimation of contrast-to-noise ratios for projection images based on the cylindrical geometry of the phantom. Analytical functions, representing the expected signal in phase and attenuation-contrast for a circular object, are fitted to individual line profiles of the projection data. The free parameter of the fit function is used to estimate the contrast and the goodness of the fit is determined to assess the noise in the respective signal. The results depict the dependence of the contrast-to-noise ratios on the applied source voltages, the number of steps of the phase stepping routine, and the exposure times for an individual step. Moreover, the influence of the number of projection angles on the image quality of CT slices is investigated. Finally, the implications for future imaging purposes with the scanner are discussed.

  15. Contrast-to-noise ratio optimization for a prototype phase-contrast computed tomography scanner

    NASA Astrophysics Data System (ADS)

    Müller, Mark; Yaroshenko, Andre; Velroyen, Astrid; Bech, Martin; Tapfer, Arne; Pauwels, Bart; Bruyndonckx, Peter; Sasov, Alexander; Pfeiffer, Franz

    2015-12-01

    In the field of biomedical X-ray imaging, novel techniques, such as phase-contrast and dark-field imaging, have the potential to enhance the contrast and provide complementary structural information about a specimen. In this paper, a first prototype of a preclinical X-ray phase-contrast CT scanner based on a Talbot-Lau interferometer is characterized. We present a study of the contrast-to-noise ratios for attenuation and phase-contrast images acquired with the prototype scanner. The shown results are based on a series of projection images and tomographic data sets of a plastic phantom in phase and attenuation-contrast recorded with varying acquisition settings. Subsequently, the signal and noise distribution of different regions in the phantom were determined. We present a novel method for estimation of contrast-to-noise ratios for projection images based on the cylindrical geometry of the phantom. Analytical functions, representing the expected signal in phase and attenuation-contrast for a circular object, are fitted to individual line profiles of the projection data. The free parameter of the fit function is used to estimate the contrast and the goodness of the fit is determined to assess the noise in the respective signal. The results depict the dependence of the contrast-to-noise ratios on the applied source voltages, the number of steps of the phase stepping routine, and the exposure times for an individual step. Moreover, the influence of the number of projection angles on the image quality of CT slices is investigated. Finally, the implications for future imaging purposes with the scanner are discussed.

  16. Abdominal Sepsis.

    PubMed

    De Waele, Jan J

    2016-08-01

    Abdominal infections are an important challenge for the intensive care physician. In an era of increasing antimicrobial resistance, selecting the appropriate regimen is important and, with new drugs coming to the market, correct use is important more than ever before and abdominal infections are an excellent target for antimicrobial stewardship programs. Biomarkers may be helpful, but their exact role in managing abdominal infections remains incompletely understood. Source control also remains an ongoing conundrum, and evidence is increasing that its importance supersedes the impact of antibiotic therapy. New strategies such as open abdomen management may offer added benefit in severely ill patients, but more data are needed to identify its exact role. The role of fungi and the need for antifungal coverage, on the other hand, have been investigated extensively in recent years, but at this point, it remains unclear who requires empirical as well as directed therapy. PMID:27363829

  17. Diffraction enhance x-ray imaging for quantitative phase contrast studies

    NASA Astrophysics Data System (ADS)

    Agrawal, A. K.; Singh, B.; Kashyap, Y. S.; Shukla, Mayank; Sarkar, P. S.; Sinha, Amar

    2016-05-01

    Conventional X-ray imaging based on absorption contrast permits limited visibility of feature having small density and thickness variations. For imaging of weakly absorbing material or materials possessing similar densities, a novel phase contrast imaging techniques called diffraction enhanced imaging has been designed and developed at imaging beamline Indus-2 RRCAT Indore. The technique provides improved visibility of the interfaces and show high contrast in the image forsmall density or thickness gradients in the bulk. This paper presents basic principle, instrumentation and analysis methods for this technique. Initial results of quantitative phase retrieval carried out on various samples have also been presented.

  18. Small animal lung imaging with an in-line X-ray phase contrast benchtop system

    NASA Astrophysics Data System (ADS)

    Garson, A. B.; Gunsten, S.; Guan, H.; Vasireddi, S.; Brody, S.; Anastasio, M. A.

    2015-03-01

    We present the results from a benchtop X-ray phase-contrast (XPC) method for lung imaging that represents a paradigm shift in the way small animal lung imaging is performed. In our method, information regarding airway microstructure that is encoded within speckle texture of a single XPC radiograph is decoded to spatially resolve changes in lung properties such as microstructure sizes, air volumes, and compliance, to name a few. Such functional information cannot be derived from conventional lung radiography or any other 2D imaging modality. By computing these images at different time points within a breathing cycle, dynamic functional imaging can be potentially achieved without the need for tomography.

  19. Characterization of a high-energy in-line phase contrast tomosynthesis prototype

    PubMed Central

    Wu, Di; Yan, Aimin; Li, Yuhua; Wong, Molly D.; Zheng, Bin; Wu, Xizeng; Liu, Hong

    2015-01-01

    Purpose: In this research, a high-energy in-line phase contrast tomosynthesis prototype was developed and characterized through quantitative investigations and phantom studies. Methods: The prototype system consists of an x-ray source, a motorized rotation stage, and a CMOS detector with a pixel pitch of 0.05 mm. The x-ray source was operated at 120 kVp for this study, and the objects were mounted on the rotation stage 76.2 cm (R1) from the source and 114.3 cm (R2) from the detector. The large air gap between the object and detector guarantees sufficient phase-shift effects. The quantitative evaluation of this prototype included modulation transfer function and noise power spectrum measurements conducted under both projection mode and tomosynthesis mode. Phantom studies were performed including three custom designed phantoms with complex structures: a five-layer bubble wrap phantom, a fishbone phantom, and a chicken breast phantom with embedded fibrils and mass structures extracted from an ACR phantom. In-plane images of the phantoms were acquired to investigate their image qualities through observation, intensity profile plots, edge enhancement evaluations, and/or contrast-to-noise ratio calculations. In addition, the robust phase-attenuation duality (PAD)-based phase retrieval method was applied to tomosynthesis for the first time in this research. It was utilized as a preprocessing method to fully exhibit phase contrast on the angular projection before reconstruction. Results: The resolution and noise characteristics of this high-energy in-line phase contrast tomosynthesis prototype were successfully investigated and demonstrated. The phantom studies demonstrated that this imaging prototype can successfully remove the structure overlapping in phantom projections, obtain delineate interfaces, and achieve better contrast-to-noise ratio after applying phase retrieval to the angular projections. Conclusions: This research successfully demonstrated a high-energy in

  20. Interlaced phase stepping in phase-contrast x-ray tomography

    NASA Astrophysics Data System (ADS)

    Zanette, I.; Bech, M.; Pfeiffer, F.; Weitkamp, T.

    2011-02-01

    We report on an interlaced acquisition scheme in grating-based x-ray phase-contrast tomography in which different viewing angles are used to retrieve a single differential phase projection. This interlaced acquisition scheme is particularly beneficial for region-of-interest tomography since it substantially reduces the artifacts caused by the external region and can eliminate the need for stop-and-go motion of the tomography rotation axis. In this letter, the higher accuracy of the region-of-interest phase reconstructions obtained with the interlaced approach is demonstrated by numerical simulation and experimental results.

  1. Phase contrast tomography of the mouse cochlea at microfocus x-ray sources

    SciTech Connect

    Bartels, Matthias; Krenkel, Martin; Hernandez, Victor H.; Moser, Tobias; Salditt, Tim

    2013-08-19

    We present phase contrast x-ray tomography of functional soft tissue within the bony cochlear capsule of mice, carried out at laboratory microfocus sources with well-matched source, detector, geometry, and reconstruction algorithms at spatial resolutions down to 2 μm. Contrast, data quality and resolution enable the visualization of thin membranes and nerve fibers as well as automated segmentation of surrounding bone. By complementing synchrotron radiation imaging techniques, a broad range of biomedical applications becomes possible as demonstrated for optogenetic cochlear implant research.

  2. Phase contrast tomography of the mouse cochlea at microfocus x-ray sources

    NASA Astrophysics Data System (ADS)

    Bartels, Matthias; Hernandez, Victor H.; Krenkel, Martin; Moser, Tobias; Salditt, Tim

    2013-08-01

    We present phase contrast x-ray tomography of functional soft tissue within the bony cochlear capsule of mice, carried out at laboratory microfocus sources with well-matched source, detector, geometry, and reconstruction algorithms at spatial resolutions down to 2 μm. Contrast, data quality and resolution enable the visualization of thin membranes and nerve fibers as well as automated segmentation of surrounding bone. By complementing synchrotron radiation imaging techniques, a broad range of biomedical applications becomes possible as demonstrated for optogenetic cochlear implant research.

  3. Projection phase contrast microscopy with a hard x-ray nanofocused beam: Defocus and contrast transfer

    SciTech Connect

    Salditt, T.; Giewekemeyer, K.; Fuhse, C.; Krueger, S. P.; Tucoulou, R.; Cloetens, P.

    2009-05-01

    We report a projection phase contrast microscopy experiment using hard x-ray pink beam undulator radiation focused by an adaptive mirror system to 100-200 nm spot size. This source is used to illuminate a lithographic test pattern with a well-controlled range of spatial frequencies. The oscillatory nature of the contrast transfer function with source-to-sample distance in this holographic imaging scheme is quantified and the validity of the weak phase object approximation is confirmed for the experimental conditions.

  4. Ultrafast, high resolution, phase contrast imaging of impact response with synchrotron radiation

    SciTech Connect

    Jensen, B. J.; Luo, S. N.; Hooks, D. E.; Ramos, K. J.; Yeager, J. D.; Kwiatkowski, K.; Shimada, T.; Dattelbaum, D. M.; Fezzaa, K.

    2012-03-15

    Understanding the dynamic response of materials at extreme conditions requires diagnostics that can provide real-time, in situ, spatially resolved measurements on the nanosecond timescale. The development of methods such as phase contrast imaging (PCI) typically used at synchrotron sources offer unique opportunities to examine dynamic material response. In this work, we report ultrafast, high-resolution, dynamic PCI measurements of shock compressed materials with 3 {mu}m spatial resolution using a single 60 ps synchrotron X-ray bunch. These results firmly establish the use of PCI to examine dynamic phenomena at ns to {mu}s timescales.

  5. A coded-aperture technique allowing x-ray phase contrast imaging with conventional sources

    SciTech Connect

    Olivo, Alessandro; Speller, Robert

    2007-08-13

    Phase contrast imaging (PCI) solves the basic limitation of x-ray imaging, i.e., poor image contrast resulting from small absorption differences. Up to now, it has been mostly limited to synchrotron radiation facilities, due to the stringent requirements on the x-ray source and detectors, and only one technique was shown to provide PCI images with conventional sources but with limits in practical implementation. The authors propose a different approach, based on coded apertures, which provides high PCI signals with conventional sources and detectors and imposes practically no applicability limits. They expect this method to cast the basis of a widespread diffusion of PCI.

  6. Optimization Of Phase-Contrast Enhanced X-Ray Imaging Of D-T Layers

    SciTech Connect

    Kozioziemski, B

    2005-06-17

    Phase-contrast enhanced x-ray imaging has been demonstrated for characterization of D-T layers inside of beryllium shells. These first demonstrations used both scintillator and direct-detection imaging. This memo details tradeoffs between the two methods in order to optimize the imaging. The guiding principle for optimization is to minimize the exposure time while maximizing the signal-to-noise ratio at the D-T solid-vapor interface. Direct-detection and scintillator performance are comparable when imaging the full capsule. However, a scintillator allows for higher-resolution images necessary for studying local defects in the D-T layer.

  7. Fast gridding projectors for analytical and iterative tomographic reconstruction of differential phase contrast data.

    PubMed

    Arcadu, Filippo; Stampanoni, Marco; Marone, Federica

    2016-06-27

    This paper introduces new gridding projectors designed to efficiently perform analytical and iterative tomographic reconstruction, when the forward model is represented by the derivative of the Radon transform. This inverse problem is tightly connected with an emerging X-ray tube- and synchrotron-based imaging technique: differential phase contrast based on a grating interferometer. This study shows, that the proposed projectors, compared to space-based implementations of the same operators, yield high quality analytical and iterative reconstructions, while improving the computational efficiency by few orders of magnitude. PMID:27410628

  8. Concomitant use of polarization and positive phase contrast microscopy for the study of microbial cells.

    PubMed

    Žižka, Zdeněk; Gabriel, Jiří

    2015-11-01

    Polarization and positive phase contrast microscope were concomitantly used in the study of the internal structure of microbial cells. Positive phase contrast allowed us to view even the fine cell structure with a refractive index approaching that of the surrounding environment, e.g., the cytoplasm, and transferred the invisible phase image to a visible amplitude image. With polarization microscopy, crossed polarizing filters together with compensators and a rotary stage showed the birefringence of different cell structures. Material containing algae was collected in ponds in Sýkořice and Zbečno villages (Křivoklát region). The objects were studied in laboratory microscopes LOMO MIN-8 Sankt Petersburg and Polmi A Carl Zeiss Jena fitted with special optics for positive phase contrast, polarizers, analyzers, compensators, rotary stages, and digital SLR camera Nikon D 70 for image capture. Anisotropic granules were found in the cells of flagellates of the order Euglenales, in green algae of the orders Chlorococcales and Chlorellales, and in desmid algae of the order Desmidiales. The cell walls of filamentous algae of the orders Zygnematales and Ulotrichales were found to exhibit significant birefringence; in addition, relatively small amounts of small granules were found in the cytoplasm. A typical shape-related birefringence of the cylindrical walls and the septa between the cells differed in intensity, which was especially apparent when using a Zeiss compensator RI-c during its successive double setting. In conclusion, the anisotropic granules found in the investigated algae mostly showed strong birefringence and varied in number, size, and location of the cells. Representatives of the order Chlorococcales contained the highest number of granules per cell, and the size of these granules was almost double than that of the other monitored microorganisms. Very strong birefringence was exhibited by cell walls of filamentous algae; it differed in the intensity

  9. Halo suppression in full-field x-ray Zernike phase contrast microscopy.

    PubMed

    Vartiainen, Ismo; Mokso, Rajmund; Stampanoni, Marco; David, Christian

    2014-03-15

    Visible light Zernike phase contrast (ZPC) microscopy is a well established method for imaging weakly absorbing samples. The method is also used with hard x-ray photon energies for structural evaluation of material science and biological applications. However, the method suffers from artifacts that are inherent for the Zernike image formation. In this Letter, we investigate their origin and experimentally show how to suppress them in x-ray full-field ZPC microscopy based on diffractive x-ray optics. PMID:24690848

  10. Quantitative In-Line Phase-Contrast Imaging with Multienergy X Rays

    NASA Astrophysics Data System (ADS)

    Gureyev, T. E.; Mayo, S.; Wilkins, S. W.; Paganin, D.; Stevenson, A. W.

    2001-06-01

    We present a new method for quantitative nondestructive characterization of objects by x-ray phase-contrast imaging. Spatial distributions of the projected values of the complex refractive index in the sample are reconstructed by processing near-field images collected at a fixed sample-to-detector distance using a polychromatic incident beam and an energy-sensitive area detector, such as a CCD used in the photon-counting spectroscopy mode. The method has the potential advantages of decreased radiation dose and increased accuracy compared to conventional techniques of x-ray imaging.

  11. Quantitative in-line phase-contrast imaging with multienergy X rays.

    PubMed

    Gureyev, T E; Mayo, S; Wilkins, S W; Paganin, D; Stevenson, A W

    2001-06-18

    We present a new method for quantitative nondestructive characterization of objects by x-ray phase-contrast imaging. Spatial distributions of the projected values of the complex refractive index in the sample are reconstructed by processing near-field images collected at a fixed sample-to-detector distance using a polychromatic incident beam and an energy-sensitive area detector, such as a CCD used in the photon-counting spectroscopy mode. The method has the potential advantages of decreased radiation dose and increased accuracy compared to conventional techniques of x-ray imaging. PMID:11415368

  12. Ethanol fixed brain imaging by phase-contrast X-ray technique

    NASA Astrophysics Data System (ADS)

    Takeda, Tohoru; Thet-Thet-Lwin; Kunii, Takuya; Sirai, Ryota; Ohizumi, Takahito; Maruyama, Hiroko; Hyodo, Kazuyuki; Yoneyama, Akio; Ueda, Kazuhiro

    2013-03-01

    The two-crystal phase-contrast X-ray imaging technique using an X-ray crystal interferometer can depict the fine structures of rat's brain such as cerebral cortex, white matter, and basal ganglia. Image quality and contrast by ethanol fixed brain showed significantly better than those by usually used formalin fixation at 35 keV X-ray energy. Image contrast of cortex by ethanol fixation was more than 3-times higher than that by formalin fixation. Thus, the technique of ethanol fixation might be better suited to image cerebral structural detail at 35 keV X-ray energy.

  13. Source effects in analyzer-based X-ray phase contrast imaging with conventional sources

    SciTech Connect

    Hoennicke, M. G.; Manica, J.; Mazzaro, I.; Cusatis, C.; Huang, X.-R.

    2012-11-15

    Several recent papers have shown the implementation of analyzer based X-ray phase contrast imaging (ABI) with conventional X-ray sources. The high flux is always a requirement to make the technique useful for bio-medical applications. Here, we present and discuss three important parameters, which need to be taken into account, when searching for the high flux ABI: anisotropic magnification, double image, and source size spread due to intrinsic dispersive diffraction by asymmetrically cut crystals. These parameters, if not well optimized, may cause important features in the acquired images which can mislead the interpretation. A few ways to minimize these effects are implemented and discussed, including some experimental results.

  14. Hard x-ray phase contrast imaging of black lipid membranes

    SciTech Connect

    Beerlink, A.; Mell, M.; Tolkiehn, M.; Salditt, T.

    2009-11-16

    We report hard x-ray phase contrast imaging of black lipid membranes, freely suspended over a micromachined aperture in an aqueous solution. Biomolecular and organic substances can thus be probed in hydrated environments by parallel beam propagation imaging, using coherent multi-kilo-electronvolt x-ray radiation. The width of the thinning film can be resolved from analysis of the intensity fringes in the Fresnel diffraction regime down to about 200 nm. The thinning process, in which solvent is expelled from the space in between two opposing monolayers, is monitored, and the domain walls between coexisting domains of swollen and thinned membrane patches are characterized.

  15. Object localization with 10 nm accuracy by x-ray phase contrast projection imaging

    SciTech Connect

    Ollinger, C.; Fuhse, C.; Kalbfleisch, S.; Tucoulou, R.; Salditt, T.

    2007-07-30

    The present work focuses on the question of localizing single object by hard x-ray phase contrast projection imaging. The authors present a setup where an x-ray channel waveguide defines a 'quasi-point source' used to illuminate and image an object in a highly coherent cone beam. Knife edge fluorescence scans revealed a beam diameter of 75 nm at a distance of 30 {mu}m behind the guide. The recorded image corresponds to an in-line hologram of the object which can be reconstructed numerically. Object translations and associated shifts in the hologram allow for the 10 nm localization accuracy.

  16. Dynamic imaging of the lungs using x-ray phase contrast

    NASA Astrophysics Data System (ADS)

    Lewis, R. A.; Yagi, N.; Kitchen, M. J.; Morgan, M. J.; Paganin, D.; Siu, K. K. W.; Pavlov, K.; Williams, I.; Uesugi, K.; Wallace, M. J.; Hall, C. J.; Whitley, J.; Hooper, S. B.

    2005-11-01

    High quality real-time imaging of lungs in vivo presents considerable challenges. We demonstrate here that phase contrast x-ray imaging is capable of dynamically imaging the lungs. It retains many of the advantages of simple x-ray imaging, whilst also being able to map weakly absorbing soft tissues based on refractive index differences. Preliminary results reported herein show that this novel imaging technique can identify and locate airway liquid and allows lung aeration in newborn rabbit pups to be dynamically visualized.

  17. Quantitative X-ray phase-contrast microtomography from a compact laser-driven betatron source

    PubMed Central

    Wenz, J.; Schleede, S.; Khrennikov, K.; Bech, M.; Thibault, P.; Heigoldt, M.; Pfeiffer, F.; Karsch, S.

    2015-01-01

    X-ray phase-contrast imaging has recently led to a revolution in resolving power and tissue contrast in biomedical imaging, microscopy and materials science. The necessary high spatial coherence is currently provided by either large-scale synchrotron facilities with limited beamtime access or by microfocus X-ray tubes with rather limited flux. X-rays radiated by relativistic electrons driven by well-controlled high-power lasers offer a promising route to a proliferation of this powerful imaging technology. A laser-driven plasma wave accelerates and wiggles electrons, giving rise to a brilliant keV X-ray emission. This so-called betatron radiation is emitted in a collimated beam with excellent spatial coherence and remarkable spectral stability. Here we present a phase-contrast microtomogram of a biological sample using betatron X-rays. Comprehensive source characterization enables the reconstruction of absolute electron densities. Our results suggest that laser-based X-ray technology offers the potential for filling the large performance gap between synchrotron- and current X-ray tube-based sources. PMID:26189811

  18. X-ray phase contrast tomography by tracking near field speckle

    PubMed Central

    Wang, Hongchang; Berujon, Sebastien; Herzen, Julia; Atwood, Robert; Laundy, David; Hipp, Alexander; Sawhney, Kawal

    2015-01-01

    X-ray imaging techniques that capture variations in the x-ray phase can yield higher contrast images with lower x-ray dose than is possible with conventional absorption radiography. However, the extraction of phase information is often more difficult than the extraction of absorption information and requires a more sophisticated experimental arrangement. We here report a method for three-dimensional (3D) X-ray phase contrast computed tomography (CT) which gives quantitative volumetric information on the real part of the refractive index. The method is based on the recently developed X-ray speckle tracking technique in which the displacement of near field speckle is tracked using a digital image correlation algorithm. In addition to differential phase contrast projection images, the method allows the dark-field images to be simultaneously extracted. After reconstruction, compared to conventional absorption CT images, the 3D phase CT images show greatly enhanced contrast. This new imaging method has advantages compared to other X-ray imaging methods in simplicity of experimental arrangement, speed of measurement and relative insensitivity to beam movements. These features make the technique an attractive candidate for material imaging such as in-vivo imaging of biological systems containing soft tissue. PMID:25735237

  19. X-ray phase-contrast tomography for high-spatial-resolution zebrafish muscle imaging

    PubMed Central

    Vågberg, William; Larsson, Daniel H.; Li, Mei; Arner, Anders; Hertz, Hans M.

    2015-01-01

    Imaging of muscular structure with cellular or subcellular detail in whole-body animal models is of key importance for understanding muscular disease and assessing interventions. Classical histological methods for high-resolution imaging methods require excision, fixation and staining. Here we show that the three-dimensional muscular structure of unstained whole zebrafish can be imaged with sub-5 μm detail with X-ray phase-contrast tomography. Our method relies on a laboratory propagation-based phase-contrast system tailored for detection of low-contrast 4–6 μm subcellular myofibrils. The method is demonstrated on 20 days post fertilization zebrafish larvae and comparative histology confirms that we resolve individual myofibrils in the whole-body animal. X-ray imaging of healthy zebrafish show the expected structured muscle pattern while specimen with a dystrophin deficiency (sapje) displays an unstructured pattern, typical of Duchenne muscular dystrophy. The method opens up for whole-body imaging with sub-cellular detail also of other types of soft tissue and in different animal models. PMID:26564785

  20. Quantitative X-ray phase-contrast microtomography from a compact laser-driven betatron source

    NASA Astrophysics Data System (ADS)

    Wenz, J.; Schleede, S.; Khrennikov, K.; Bech, M.; Thibault, P.; Heigoldt, M.; Pfeiffer, F.; Karsch, S.

    2015-07-01

    X-ray phase-contrast imaging has recently led to a revolution in resolving power and tissue contrast in biomedical imaging, microscopy and materials science. The necessary high spatial coherence is currently provided by either large-scale synchrotron facilities with limited beamtime access or by microfocus X-ray tubes with rather limited flux. X-rays radiated by relativistic electrons driven by well-controlled high-power lasers offer a promising route to a proliferation of this powerful imaging technology. A laser-driven plasma wave accelerates and wiggles electrons, giving rise to a brilliant keV X-ray emission. This so-called betatron radiation is emitted in a collimated beam with excellent spatial coherence and remarkable spectral stability. Here we present a phase-contrast microtomogram of a biological sample using betatron X-rays. Comprehensive source characterization enables the reconstruction of absolute electron densities. Our results suggest that laser-based X-ray technology offers the potential for filling the large performance gap between synchrotron- and current X-ray tube-based sources.

  1. First evidence of phase-contrast imaging with laboratory sources and active pixel sensors

    NASA Astrophysics Data System (ADS)

    Olivo, A.; Arvanitis, C. D.; Bohndiek, S. E.; Clark, A. T.; Prydderch, M.; Turchetta, R.; Speller, R. D.

    2007-11-01

    The aim of the present work is to achieve a first step towards combining the advantages of an innovative X-ray imaging technique—phase-contrast imaging (XPCi)—with those of a new class of sensors, i.e. CMOS-based active pixel sensors (APSs). The advantages of XPCi are well known and include increased image quality and detection of details invisible to conventional techniques, with potential application fields encompassing the medical, biological, industrial and security areas. Vanilla, one of the APSs developed by the MI-3 collaboration (see http://mi3.shef.ac.uk), was thoroughly characterised and an appropriate scintillator was selected to provide X-ray sensitivity. During this process, a set of phase-contrast images of different biological samples was acquired by means of the well-established free-space propagation XPCi technique. The obtained results are very encouraging and are in optimum agreement with the predictions of a simulation recently developed by some of the authors thus further supporting its reliability. This paper presents these preliminary results in detail and discusses in brief both the background to this work and its future developments.

  2. Teachable, high-content analytics for live-cell, phase contrast movies.

    PubMed

    Alworth, Samuel V; Watanabe, Hirotada; Lee, James S J

    2010-09-01

    CL-Quant is a new solution platform for broad, high-content, live-cell image analysis. Powered by novel machine learning technologies and teach-by-example interfaces, CL-Quant provides a platform for the rapid development and application of scalable, high-performance, and fully automated analytics for a broad range of live-cell microscopy imaging applications, including label-free phase contrast imaging. The authors used CL-Quant to teach off-the-shelf universal analytics, called standard recipes, for cell proliferation, wound healing, cell counting, and cell motility assays using phase contrast movies collected on the BioStation CT and BioStation IM platforms. Similar to application modules, standard recipes are intended to work robustly across a wide range of imaging conditions without requiring customization by the end user. The authors validated the performance of the standard recipes by comparing their performance with truth created manually, or by custom analytics optimized for each individual movie (and therefore yielding the best possible result for the image), and validated by independent review. The validation data show that the standard recipes' performance is comparable with the validated truth with low variation. The data validate that the CL-Quant standard recipes can provide robust results without customization for live-cell assays in broad cell types and laboratory settings. PMID:20639505

  3. Absorption and Phase Contrast X-Ray Imaging in Paleontology Using Laboratory and Synchrotron Sources.

    PubMed

    Bidola, Pidassa; Stockmar, Marco; Achterhold, Klaus; Pfeiffer, Franz; Pacheco, Mírian L A F; Soriano, Carmen; Beckmann, Felix; Herzen, Julia

    2015-10-01

    X-ray micro-computed tomography (μCT) is commonly used for imaging of samples in biomedical or materials science research. Owing to the ability to visualize a sample in a nondestructive way, X-ray μCT is perfectly suited to inspect fossilized specimens, which are mostly unique or rare. In certain regions of the world where important sedimentation events occurred in the Precambrian geological time, several fossilized animals are studied to understand questions related to their origin, environment, and life evolution. This article demonstrates the advantages of applying absorption and phase-contrast CT on the enigmatic fossil Corumbella werneri, one of the oldest known animals capable of building hard parts, originally discovered in Corumbá (Brazil). Different tomographic setups were tested to visualize the fossilized inner structures: a commercial laboratory-based μCT device, two synchrotron-based imaging setups using conventional absorption and propagation-based phase contrast, and a commercial X-ray microscope with a lens-coupled detector system, dedicated for radiography and tomography. Based on our results we discuss the strengths and weaknesses of the different imaging setups for paleontological studies. PMID:26306692

  4. Statistical iterative reconstruction algorithm for X-ray phase-contrast CT

    PubMed Central

    Hahn, Dieter; Thibault, Pierre; Fehringer, Andreas; Bech, Martin; Koehler, Thomas; Pfeiffer, Franz; Noël, Peter B.

    2015-01-01

    Grating-based phase-contrast computed tomography (PCCT) is a promising imaging tool on the horizon for pre-clinical and clinical applications. Until now PCCT has been plagued by strong artifacts when dense materials like bones are present. In this paper, we present a new statistical iterative reconstruction algorithm which overcomes this limitation. It makes use of the fact that an X-ray interferometer provides a conventional absorption as well as a dark-field signal in addition to the phase-contrast signal. The method is based on a statistical iterative reconstruction algorithm utilizing maximum-a-posteriori principles and integrating the statistical properties of the raw data as well as information of dense objects gained from the absorption signal. Reconstruction of a pre-clinical mouse scan illustrates that artifacts caused by bones are significantly reduced and image quality is improved when employing our approach. Especially small structures, which are usually lost because of streaks, are recovered in our results. In comparison with the current state-of-the-art algorithms our approach provides significantly improved image quality with respect to quantitative and qualitative results. In summary, we expect that our new statistical iterative reconstruction method to increase the general usability of PCCT imaging for medical diagnosis apart from applications focused solely on soft tissue visualization. PMID:26067714

  5. High-Resolution Phase-Contrast Imaging of Submicron Particles in Unstained Lung Tissue

    NASA Astrophysics Data System (ADS)

    Schittny, J. C.; Barré, S. F.; Mokso, R.; Haberthür, D.; Semmler-Behnke, M.; Kreyling, W. G.; Tsuda, A.; Stampanoni, M.

    2011-09-01

    To access the risks and chances of deposition of submicron particles in the gas-exchange area of the lung, a precise three-dimensional (3D)-localization of the sites of deposition is essential—especially because local peaks of deposition are expected in the acinar tree and in individual alveoli. In this study we developed the workflow for such an investigation. We administered 200-nm gold particles to young adult rats by intratracheal instillation. After fixation and paraffin embedding, their lungs were imaged unstained using synchrotron radiation x-ray tomographic microscopy (SRXTM) at the beamline TOMCAT (Swiss Light Source, Villigen, Switzerland) at sample detector distances of 2.5 mm (absorption contrast) and of 52.5 mm (phase contrast). A segmentation based on a global threshold of grey levels was successfully done on absorption-contrast images for the gold and on the phase-contrast images for the tissue. The smallest spots containing gold possessed a size of 1-2 voxels of 370-nm side length. We conclude that a combination of phase and absorption contrast SRXTM imaging is necessary to obtain the correct segmentation of both tissue and gold particles. This method will be used for the 3D localization of deposited particles in the gas-exchange area of the lung.

  6. Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes.

    PubMed

    Debeir, O; Van Ham, P; Kiss, R; Decaestecker, C

    2005-06-01

    In this paper, we propose a combination of mean-shift-based tracking processes to establish migrating cell trajectories through in vitro phase-contrast video microscopy. After a recapitulation on how the mean-shift algorithm permits efficient object tracking we describe the proposed extension and apply it to the in vitro cell tracking problem. In this application, the cells are unmarked (i.e., no fluorescent probe is used) and are observed under classical phase-contrast microscopy. By introducing an adaptive combination of several kernels, we address several problems such as variations in size and shape of the tracked objects (e.g., those occurring in the case of cell membrane extensions), the presence of incomplete (or noncontrasted) object boundaries, partially overlapping objects and object splitting (in the case of cell divisions or mitoses). Comparing the tracking results automatically obtained to those generated manually by a human expert, we tested the stability of the different algorithm parameters and their effects on the tracking results. We also show how the method is resistant to a decrease in image resolution and accidental defocusing (which may occur during long experiments, e.g., dozens of hours). Finally, we applied our methodology on cancer cell tracking and showed that cytochalasin-D significantly inhibits cell motility. PMID:15957594

  7. A novel high temporal resolution phase contrast MRI technique for measuring mitral valve flows

    NASA Astrophysics Data System (ADS)

    Voorhees, Abram; Bohmann, Katja; McGorty, Kelly Anne; Wei, Timothy; Chen, Qun

    2005-11-01

    Mitral valve flow imaging is inherently difficult due to valve plane motion and high blood flow velocities, which can range from 200 cm/s to 700 cm/s under regurgitant conditions. As such, insufficient temporal resolution has hampered imaging of mitral valve flows using magnetic resonance imaging (MRI). A novel phase contrast MRI technique, phase contrast using phase train imaging (PCPTI), has been developed to address the high temporal resolution needs for imaging mitral valve flows. The PCPTI sequence provides the highest temporal resolution to-date (6 ms) for measuring in-plane and through-plane flow patterns, with each velocity component acquired in a separate breathhold. Tested on healthy human volunteers, comparison to a conventional retrogated PC-FLASH cine sequence showed reasonable agreement. Results from a more rigorous validation using digital particle image velocimetry technique will be presented. The technique will be demonstrated in vitro using a physiological flow phantom and a St. Jude Medical Masters Series prosthetic valve.

  8. Preliminary research on dual-energy X-ray phase-contrast imaging

    NASA Astrophysics Data System (ADS)

    Han, Hua-Jie; Wang, Sheng-Hao; Gao, Kun; Wang, Zhi-Li; Zhang, Can; Yang, Meng; Zhang, Kai; Zhu, Pei-Ping

    2016-04-01

    Dual-energy X-ray absorptiometry (DEXA) has been widely applied to measure the bone mineral density (BMD) and soft-tissue composition of the human body. However, the use of DEXA is greatly limited for low-Z materials such as soft tissues due to their weak absorption, while X-ray phase-contrast imaging (XPCI) shows significantly improved contrast in comparison with the conventional standard absorption-based X-ray imaging for soft tissues. In this paper, we propose a novel X-ray phase-contrast method to measure the area density of low-Z materials, including a single-energy method and a dual-energy method. The single-energy method is for the area density calculation of one low-Z material, while the dual-energy method aims to calculate the area densities of two low-Z materials simultaneously. Comparing the experimental and simulation results with the theoretical ones, the new method proves to have the potential to replace DEXA in area density measurement. The new method sets the prerequisites for a future precise and low-dose area density calculation method for low-Z materials. Supported by Major State Basic Research Development Program (2012CB825800), Science Fund for Creative Research Groups (11321503) and National Natural Science Foundation of China (11179004, 10979055, 11205189, 11205157)

  9. X-ray phase contrast tomography by tracking near field speckle

    NASA Astrophysics Data System (ADS)

    Wang, Hongchang; Berujon, Sebastien; Herzen, Julia; Atwood, Robert; Laundy, David; Hipp, Alexander; Sawhney, Kawal

    2015-03-01

    X-ray imaging techniques that capture variations in the x-ray phase can yield higher contrast images with lower x-ray dose than is possible with conventional absorption radiography. However, the extraction of phase information is often more difficult than the extraction of absorption information and requires a more sophisticated experimental arrangement. We here report a method for three-dimensional (3D) X-ray phase contrast computed tomography (CT) which gives quantitative volumetric information on the real part of the refractive index. The method is based on the recently developed X-ray speckle tracking technique in which the displacement of near field speckle is tracked using a digital image correlation algorithm. In addition to differential phase contrast projection images, the method allows the dark-field images to be simultaneously extracted. After reconstruction, compared to conventional absorption CT images, the 3D phase CT images show greatly enhanced contrast. This new imaging method has advantages compared to other X-ray imaging methods in simplicity of experimental arrangement, speed of measurement and relative insensitivity to beam movements. These features make the technique an attractive candidate for material imaging such as in-vivo imaging of biological systems containing soft tissue.

  10. Quantitative hard x-ray phase contrast imaging of micropipes in SiC

    NASA Astrophysics Data System (ADS)

    Kohn, V. G.; Argunova, T. S.; Je, J. H.

    2013-12-01

    Peculiarities of quantitative hard x-ray phase contrast imaging of micropipes in SiC are discussed. The micropipe is assumed as a hollow cylinder with an elliptical cross section. The major and minor diameters can be restored using the least square fitting procedure by comparing the experimental data, i.e. the profile across the micropipe axis, with those calculated based on phase contrast theory. It is shown that one projection image gives an information which does not allow a complete determination of the elliptical cross section, if an orientation of micropipe is not known. Another problem is a weak accuracy in estimating the diameters, partly because of using pink synchrotron radiation, which is necessary because a monochromatic beam intensity is not sufficient to reveal the weak contrast from a very small object. The general problems of accuracy in estimating the two diameters using the least square procedure are discussed. Two experimental examples are considered to demonstrate small as well as modest accuracies in estimating the diameters.