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Sample records for guvenc basin ankara

  1. Tectonic Evolution of the Çayirhan Neogene Basin (Ankara), Central Turkey

    NASA Astrophysics Data System (ADS)

    Behzad, Bezhan; Koral, Hayrettin; İşb&idot; l, Duygu; Karaaǧa; ç, Serdal

    2016-04-01

    Çayırhan (Ankara) is located at crossroads of the Western Anatolian extensional region, analogous to the Basin and Range Province, and suture zone of the Neotethys-Ocean, which is locus of the North Anatolian Transform since the Late Miocene. To the north of Çayırhan (Ankara), a Neogene sedimentary basin comprises Lower-Middle Miocene and Upper Miocene age formations, characterized by swamp, fluvial and lacustrine settings respectively. This sequence is folded and transected by neotectonic faults. The Sekli thrust fault is older than the Lower-Middle Miocene age formations. The Davutoǧlan fault is younger than the Lower-Middle Miocene formations and is contemporaneous to the Upper Miocene formation. The Çatalkaya fault is younger than the Upper Miocene formation. The sedimentary and tectonic features provide information on mode, timing and evolution of this Neogene age sedimentary basin in Central Turkey. It is concluded that the region underwent a period of uplift and erosion under the influence of contractional tectonics prior to the Early-Middle Miocene, before becoming a semi-closed basin under influence of transtensional tectonics during the Early-Middle Miocene and under influence of predominantly extensional tectonics during the post-Late Miocene times. Keywords: Tectonics, Extension, Transtension, Stratigraphy, Neotectonic features.

  2. Urban Heat Island ın Ankara

    NASA Astrophysics Data System (ADS)

    Yılmaz, Erkan

    2016-04-01

    In this study, the seasonal variation of the surface temperature of Ankara urban area and its enviroment have been analyzed by using Landsat 7 image. The Landsat 7 images of each month from 2007 to 2011 have been used to analyze the annually changes of the surface temperature. The land cover of the research area was defined with supervised classification method on the basis of the satellite image belonging to 2008 July. After determining the surface temperatures from 6-1 bands of satellite images, the monthly mean surface temperatures were calculated for land cover classification for the period between 2007 and 2011. According to the results obtained, the surface temperatures are high in summer and low in winter from the airtemperatures. all satellite images were taken at 10:00 am, it is found that urban areas are cooler than rural areas at 10:00 am. Regarding the land cover classification, the water surfaces are the coolest surfaces during the whole year.The warmest areas are the grasslands and dry farming areas. While the parks are warmer than the urban areas during the winter, during the summer they are cooler than artificial land covers. The urban areas with higher building density are the cooler surfaces after water bodies.

  3. Chemical and stable-radiogenic isotope compositions of Polatlı-Haymana thermal waters (Ankara, Turkey)

    NASA Astrophysics Data System (ADS)

    Akilli, Hafize; Mutlu, Halim

    2016-04-01

    Complex tectono-magmatic evolution of the Anatolian land resulted in development of numerous geothermal areas through Turkey. The Ankara region in central Anatolia is surrounded by several basins which are filled with upper Cretaceous-Tertiary sediments. Overlying Miocene volcanics and step faulting along the margins of these basins played a significant role in formation of a number of low-enthalpy thermal waters. In this study, chemical and isotopic compositions of Polatlı and Haymana geothermal waters in the Ankara region are investigated. The Polatlı-Haymana waters with a temperature range of 24 to 43 °C are represented by Ca-(Na)-HCO3 composition implying derivation from carbonate type reservoir rocks. Oxygen-hydrogen isotope values of the waters are conformable with the Global Meteoric Water Line and point to a meteoric origin. The carbon isotopic composition in dissolved inorganic carbon (DIC) of the studied waters is between -21.8 and -1.34 permil (vs. VPDB). Marine carbonates and organic rocks are the main sources of carbon. There is a high correlation between oxygen (3.7 to 15.0 permil; VSMOW) and sulfur (-9.2 to 19.5 permil; VCDT) isotope compositions of sulfate in waters. The mixing of sulfate from dissolution of marine carbonates and terrestrial evaporite units is the chief process behind the observed sulfate isotope systematics of the samples. 87Sr/86Sr ratios of waters varying from 0.705883 to 0.707827 are consistent with those of reservoir rocks. The temperatures calculated by SO4-H2O isotope geothermometry are between 81 and 138 °C nearly doubling the estimates from chemical geothermometers.

  4. Investigation of Bartonella henselae in cats in Ankara, Turkey.

    PubMed

    Celebi, B; Kilic, S; Aydin, N; Tarhan, G; Carhan, A; Babur, C

    2009-05-01

    The purpose of this study was to determine Bartonella henselae prevalance in cats in Ankara. Whole bloods and sera collected from 256 cats were investigated for the presence feline Bartonella species by culture and sera were tested for the presence of antibodies against B. henselae IgG using immunofluorescence assay. Bartonella species were isolated by blood culture from 24 (9.4%) cats. Bartonella isolates were subjected to restriction fragment length polymorphism (RFLP) by using TaqI and HhaI endonucleases to identify species. Twenty-one isolates were determined as B. henselae and three of 24 isolates were determined as Bartonella clarridgeiae with RFLP. The bacteraemia prevalence and seroprevalence of B. henselae IgG antibodies in cats was detected as 8.2% and 18.6% respectively. This is the first report on B. henselea and B. clarridgeiae in cats in Turkey. PMID:18990198

  5. Recombinant modified vaccinia virus Ankara-based malaria vaccines.

    PubMed

    Sebastian, Sarah; Gilbert, Sarah C

    2016-01-01

    A safe and effective malaria vaccine is a crucial part of the roadmap to malaria elimination/eradication by the year 2050. Viral-vectored vaccines based on adenoviruses and modified vaccinia virus Ankara (MVA) expressing malaria immunogens are currently being used in heterologous prime-boost regimes in clinical trials for induction of strong antigen-specific T-cell responses and high-titer antibodies. Recombinant MVA is a safe and well-tolerated attenuated vector that has consistently shown significant boosting potential. Advances have been made in large-scale MVA manufacture as high-yield producer cell lines and high-throughput purification processes have recently been developed. This review describes the use of MVA as malaria vaccine vector in both preclinical and clinical studies in the past 5 years. PMID:26511884

  6. Analysis of urban effects on soil temperature in Ankara.

    PubMed

    Turkoglu, Necla

    2010-10-01

    In this study, data from two different meteorology stations were analyzed in order to reveal the effects of the urbanization on the soil temperature. These stations are the Ankara Meteorology Station (AMS), showing the urban effects, and the Esenboğa Meteorology Station (EMS), showing the rural effects. The soil temperatures measured at depths of 5, 10, 20, and 50 cm at 0700, 1400, and 2100 hours between 1960 and 2005 were used in the analysis. Long-term mean monthly temperatures at each depth and at each time considered were calculated and analyzed using Sen's slope and Mann-Kendall tests. The results showed that the mean monthly urban soil temperatures were generally higher than the rural soil temperatures. The differences between temperatures measured at 5, 10, 20, and 50 cm in urban and rural stations (DeltaT(s(AMS-EMS))) ranged between 1.8 degrees C and 2.1 degrees C. As in the urban heat islands, the differences between the urban and rural soil temperatures are high at 2100 hours and low at 1400 hours. It was also observed that, due to the increasing number of buildings around the Esenboğa Station in recent years, the difference between the urban and rural soil temperatures seems to have become smaller. These show that the factors affecting the urban heat islands and those affecting the soil temperatures are similar. Also, the temperature differences were observed to be higher during the warm season than in the cold season. The frequency distributions of the temperature differences (DeltaT(s(AMS-EMS))) reveal both positive and negative values. However, the positive temperature differences are obviously prevalent. PMID:19859823

  7. Internet Use Habits of Students of the Department of Information Management, Hacettepe University, Ankara

    ERIC Educational Resources Information Center

    Ucak, Nazan Ozenc

    2007-01-01

    The frequency and other characteristics of Internet use of students studying at the Department of Information Management at Hacettep University in Ankara, Turkey, are examined. According to the findings, students prefer electronic media to printed media, they find the easy accessibility of the information more important than the other qualities,…

  8. Modified Vaccinia Ankara Virus Vaccination Provides Long-Term Protection against Nasal Rabbitpox Virus Challenge.

    PubMed

    Jones, Dorothy I; McGee, Charles E; Sample, Christopher J; Sempowski, Gregory D; Pickup, David J; Staats, Herman F

    2016-07-01

    Modified vaccinia Ankara virus (MVA) is a smallpox vaccine candidate. This study was performed to determine if MVA vaccination provides long-term protection against rabbitpox virus (RPXV) challenge, an animal model of smallpox. Two doses of MVA provided 100% protection against a lethal intranasal RPXV challenge administered 9 months after vaccination. PMID:27146001

  9. Perspectives on ... An Evaluation of Faculty Use of the Digital Library at Ankara University, Turkey

    ERIC Educational Resources Information Center

    Atilgan, Dogan; Bayram, Ozlem

    2006-01-01

    New consortial buying models have dramatically increased the availability of online resources, particularly journal articles, in the universities and technical institutes of developing countries. The degree of acceptance and pattern of use of such materials is of great interest to library collection development. Ankara University surveyed faculty…

  10. Life cycle assessment of municipal solid waste management methods: Ankara case study.

    PubMed

    Ozeler, D; Yetiş, U; Demirer, G N

    2006-04-01

    Different solid waste management system scenarios were developed and compared for the Municipal Solid Waste Management System of Ankara by using the life cycle assessment (LCA) methodology. The solid waste management methods considered in the scenarios were collection and transportation of wastes, source reduction, Material Recovery Facility (MRF)/Transfer Stations (TS), incineration, anaerobic digestion and landfilling. The goal of the study was to determine the most environmentally friendly option of MSWM system for Ankara. The functional unit of the study was the amount of solid waste generated in the system area of concern, which are the districts of Ankara. The life cycle inventory analysis was carried out by IWM Model-1. The inputs and outputs of each management stage were defined and the inventory emissions calculated by the model were classified in to impact categories; non-renewable energy sources exhausting potential, final solid waste as hazardous and non-hazardous, global warming, acidification, eutrophication and human toxicity. The impacts were quantified with the weighing factors of each category to develop the environmental profiles of each scenario. In most of the categories, Source Reduction Scenario was found to be the most feasible management method, except the global warming category. The lowest contribution to GWP was calculated for the anaerobic digestion process. In the interpretation and improvement assessment stage, the results were further evaluated and recommendations were made to improve the current solid waste management system of Ankara. PMID:16310852

  11. Service Quality of State Universities in Turkey: The Case of Ankara

    ERIC Educational Resources Information Center

    Eres, Figen

    2011-01-01

    The aim of this study is determine the service quality perceptions of students being educated at state universities in Ankara. The sample of the study is composed of final grade students of faculties of Economics and Administrative Sciences. The sample of the study is composed of a total of randomly selected students. There were 416 returned…

  12. Image of Turkish Basic Schools: A Reflection from the Province of Ankara

    ERIC Educational Resources Information Center

    Eres, Figen

    2011-01-01

    The purpose of this study was to investigate the organizational image of basic schools in Turkey, a rapidly developing nation that has been investing significantly in education. Participants were 730 residents of Ankara province in the Golbasi district. The participants were selected using a cluster sampling methodology. Data were collected…

  13. [Studies of Yersinia pestis in wild animals captured in Ankara, Konya and Nevsehir].

    PubMed

    Ozsan, K; Fazli, A; Aktan, M; Beyoğlu, K

    1976-01-01

    No Yersinia pestis could be isolated, by culturing and by inoculations to 1212 guinea-pigs and 150 mice; from 623 citellus, 41 Mus musculus, 55 Microtus, 442 Meriones, 70 Rattus rattus, 56 turtle, 89 hare, 1 hamster, 1 hedgehog, 1 sea snake, altogether 790 dead, 589 alive, i.e. 1379. wild animals captured in Ankara, Konya (Karapinar), Urfa (Akçakale) and in Nevşehir. In 141 sera taken from citellus captured alive, and in 174 sera taken from guinea-pigs inoculated with spleen, liver and kidney suspensions of wild animals, 1/20 - 1/80 agglutination titers (one of the sera from a guinea-pig inoculated with hare organ suspension) were obtained. These findings, probably were due to Yersinia pseudotuberculosis, because this organism was isolated from citellus captured in Ankara and Konya. PMID:933892

  14. Protective Efficacy of Recombinant Modified Vaccinia Virus Ankara Delivering Middle East Respiratory Syndrome Coronavirus Spike Glycoprotein

    PubMed Central

    Volz, Asisa; Kupke, Alexandra; Song, Fei; Jany, Sylvia; Fux, Robert; Shams-Eldin, Hosam; Schmidt, Jörg; Becker, Christin; Eickmann, Markus; Becker, Stephan

    2015-01-01

    Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory disease in humans. We tested a recombinant modified vaccinia virus Ankara (MVA) vaccine expressing full-length MERS-CoV spike (S) glycoprotein by immunizing BALB/c mice with either intramuscular or subcutaneous regimens. In all cases, MVA-MERS-S induced MERS-CoV-specific CD8+ T cells and virus-neutralizing antibodies. Vaccinated mice were protected against MERS-CoV challenge infection after transduction with the human dipeptidyl peptidase 4 receptor. This MERS-CoV infection model demonstrates the safety and efficacy of the candidate vaccine. PMID:26018172

  15. A test of Hirschi's social bonding theory: juvenile delinquency in the high schools of Ankara, Turkey.

    PubMed

    Ozbay, Ozden; Ozcan, Yusuf Ziya

    2006-12-01

    Travis Hirschi's social bonding theory has mostly been tested in the West. In this study, the theory is tested on juvenile delinquency in a developing country, Turkey. Data were gathered from 1,710 high school students in Ankara by using two-stage stratified cluster sampling. Factor analysis was employed to determine the dimensions of juvenile delinquency (assault, school delinquency, and public disturbance), and regression analysis was used to test the theory. Similar to some other traditional societies, the social bonding theory plays an important role in the explanation of juvenile delinquency in Turkey. PMID:17068194

  16. Feasibility and acceptability of a text messaging-based smoking cessation program in ankara, Turkey.

    PubMed

    Ybarra, Michele L; Holtrop, Jodi S; Bağci Bosi, A Tülay; Bilir, Nazmi; Korchmaros, Josephine D; Salih Emri, A K

    2013-08-01

    Data from high-income countries suggest that cell phone-based smoking cessation programs have the potential to affect cessation rates. There is a paucity of research, however, about the feasibility of cell phone-based smoking cessation programs in lower income countries that have higher smoking prevalence rates. A one-arm feasibility and acceptability pilot study of SMS Turkey, a text messaging-based smoking cessation program, was conducted in Ankara, the capital of Turkey. The authors recruited 75 daily smokers who were seriously thinking about quitting in the subsequent 30 days into the 6-week SMS Turkey program. Recruitment was completed in 4 months. Participant retention was high: Almost all (96%) completed the program, and 84% provided 12-week follow-up data. Most (89%) of the respondents who completed the 4-week follow-up measures (n = 38, 51%) said that the text messages were easy to understand and referred to what they were experiencing and feeling during the quitting process (78%). On the basis of intention to treat, 13% of participants (n = 10) reported, at 12-week follow-up, continuous abstinence since their quit date, confirmed by carbon monoxide readings. The cell phone text messaging-based smoking cessation intervention appears feasible and acceptable in Ankara, Turkey. PMID:23627304

  17. 78 FR 76821 - Executive-Led U.S.-Turkey Healthcare Trade Mission to Ankara, Istanbul, and Izmir

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-19

    ... published at 78 FR 18318 (March 26, 2013), regarding the Executive-Led U.S.-Turkey Healthcare Trade Mission... evaluated in accordance with the Notice published at 78 FR 18318 (March 26, 2013) regarding the Amendment to... International Trade Administration Executive-Led U.S.-Turkey Healthcare Trade Mission to Ankara, Istanbul,...

  18. An Assessment of School-to-Work Transition in a Vocational and Technical High School in Ankara, Turkey.

    ERIC Educational Resources Information Center

    Olkun, Sinan; Simsek, Hasan

    The school-to-work transition process of a vocational-technical high school in Ankara, Turkey was assessed from the perspectives of graduates and employers. Data were collected through interviews with 126 of the school's graduates and 18 of their employers. Results showed that in students' vocational choice, future employment anxiety was more…

  19. Lean Body Mass as a Predictive Value of Hypertension in Young Adults, in Ankara, Turkey

    PubMed Central

    VAZIRI, Yashar; BULDUK, Sidika; SHADMAN, Zhaleh; BULDUK, Emre Ozgur; HEDAYATI, Mehdi; KOC, Haluk; ER, Fatmanur; ERDOGAN, Ceren Suveren

    2015-01-01

    Background: The aim of this study was to assess the predictive capacity of body composition estimated by bioelectrical impedance analysis (BIA) to identify abnormal blood pressure in physical education and sport teaching students in the city of Ankara. Methods: Data for this cross-sectional study were obtained in the city of Ankara in 2014. A total of 133 students aged 20–35 yr participated in this study. Anthropometric measurements were measured. Body composition was assessed by BIA. Physical activity level (PAL) and usual dietary intake were assessed. Pre-hypertension and hypertension were defined, respectively, as BP ≥120 and/or 80, and ≥140 and /or 90 mmHg. Results: More overweight students showed abnormal BP especially SBP (P=0.005 and 0.002, respectively). Age adjusted regression showed significant association between arm circumference (β= 0.176, P 0.044), mid arm muscle circumference (MAMC) (β= 0.235, P 0.007), lean body mass (LBM) (β= 0.238, P 0.006), basal metabolism rate (BMR) (β= 0.219, P 0.012) and SBP and, also, MAMC (β= 0.201, P 0.022), LBM (β= 0.203, P 0.021), BMR (β= 0.189, P 0.030) and DBP. Fat intake was associated with DBP (β= 0.14, P =0.040). Multivariate regression models adjusted for age, BMI, WC and fat intake/kg body weight showed positive association of SBP with MAMC, BMR and LBM (P<0.05). Conclusion: The relationship between blood pressure and body composition in young adults may be associated to LBM and MAMC. LBM or MAMC in this population may be indirect indicators of heart muscle mass and heart pumping power. PMID:26811815

  20. Pollen counts and their relationship to meteorological factors in Ankara, Turkey during 2005-2008

    NASA Astrophysics Data System (ADS)

    Kizilpinar, Ilginc; Civelek, Ersoy; Tuncer, Ayfer; Dogan, Cahit; Karabulut, Erdem; Sahiner, Umit M.; Yavuz, S. Tolga; Sackesen, Cansin

    2011-07-01

    Pollen plays an important role in the development and exacerbation of allergic diseases. We aimed to investigate the days with highest counts of the most allergenic pollens and to identify the meteorological factors affecting pollen counts in the atmosphere of Ankara, Turkey. Airborne pollen measurements were carried out from 2005 to 2008 with a Burkard volumetric 7-day spore trap. Microscope counts were converted into atmospheric concentrations and expressed as pollen grains/m3. Meteorological parameters were obtained from the State Meteorological Service. All statistical analyses were done with pollen counts obtained from March to October for each year. The percentages of tree, grass and weed pollens were 72.1% ( n = 24,923), 12.8% ( n = 4,433) and 15.1% ( n = 5,219), respectively. The Pinaceae family from tree taxa (39% to 57%) and the Chenopodiaceae/Amaranthaceae family from weed taxa, contributed the highest percentage of pollen (25% to 43%), while from the grass taxa, only the Poaceae family was detected from 2005 to 2008. Poaceae and Chenopodiaceae/Amaranthaceae families, which are the most allergenic pollens, were found in high numbers from May to August in Ankara. In multiple logistic regression analysis, wind speed (OR = 1.18, CI95% = 1.02-1.36, P = 0.023) for tree pollen, daily mean temperature (OR = 1.10, CI95% = 1.04-1.17, P = 0.001) and sunshine hours (OR = 1.15, CI95% = 1.01-1.30, P = 0.033) for grass pollen, and sunshine hours (OR = 3.79, CI95% = 1.03-13.92, P = 0.044) for weed pollen were found as significant risk factors for high pollen count. The pollen calendar and its association with meteorological factors depend mainly on daily temperature, sunshine hours and wind speed, which may help draw the attention of physicians and allergic patients to days with high pollen counts.

  1. A proton irradiation test facility for space research in Ankara, Turkey

    NASA Astrophysics Data System (ADS)

    Gencer, Ayşenur; Yiǧitoǧlu, Merve; Bilge Demirköz, Melahat; Efthymiopoulos, Ilias

    2016-07-01

    Space radiation often affects the electronic components' performance during the mission duration. In order to ensure reliable performance, the components must be tested to at least the expected dose that will be received in space, before the mission. Accelerator facilities are widely used for such irradiation tests around the world. Turkish Atomic Energy Authority (TAEA) has a 15MeV to 30MeV variable proton cyclotron in Ankara and the facility's main purpose is to produce radioisotopes in three different rooms for different target systems. There is also an R&D room which can be used for research purposes. This paper will detail the design and current state of the construction of a beamline to perform Single Event Effect (SEE) tests in Ankara for the first time. ESA ESCC No.25100 Standard Single Event Effect Test Method and Guidelines is being considered for these SEE tests. The proton beam kinetic energy must be between 20MeV and 200MeV according to the standard. While the proton energy is suitable for SEE tests, the beam size must be 15.40cm x 21.55cm and the flux must be between 10 ^{5} p/cm ^{2}/s to at least 10 ^{8} p/cm ^{2}/s according to the standard. The beam size at the entrance of the R&D room is mm-sized and the current is variable between 10μA and 1.2mA. Therefore, a defocusing beam line has been designed to enlarge the beam size and reduce the flux value. The beam line has quadrupole magnets to enlarge the beam size and the collimators and scattering foils are used for flux reduction. This facility will provide proton fluxes between 10 ^{7} p/cm ^{2}/s and 10 ^{10} p/cm ^{2}/s for the area defined in the standard when completed. Also for testing solar cells developed for space, the proton beam energy will be lowered below 10MeV. This project has been funded by Ministry of Development in Turkey and the beam line construction will finish in two years and SEE tests will be performed for the first time in Turkey.

  2. [A case of central nervous system infection due to west nile virus lineage-1 in ankara province, Turkey].

    PubMed

    Ocal, Murat; Onder, Halil; Arsava, Ethem M; Alp, Sehnaz; Ozkul, Aykut; Ergünay, Koray

    2013-01-01

    West Nile virus (WNV) is a mosquito-borne Flavivirus (family Flaviviridae), maintained in an enzootic cycle between birds as amplifying hosts and mosquito vectors. While WNV exposure in humans frequently remain subclinical, a febrile illness called West Nile fever occurs in about 20% and neuroinvasive disease in less than 1% of the affected individuals. For the last two decades, WNV has caused outbreaks of severe neuroinvasive disease in humans and horses in Europe, the Mediterranean Basin and emerged in the American continent. Although, previous serosurveillance reports have revealed human WNV exposure in various regions in Turkey; well-characterized clinical cases have only been reported after 2009-2010. In this report, a case of WNV encephalitis caused by a Lineage 1 virus strain and identified in Ankara province, Central Anatolia, Turkey, was presented. An 87 year-old woman with a history of hypertension and a recent febrile episode was admitted to Hacettepe University Hospital in late May 2012, with altered consciousness, myoclonic jerks in facial muscles and left extremity. Hyponatremia and increased alanine and aspartate aminotransferase levels were noted in blood analyses. Initial electroencephalogram (EEG) demonstrated diffuse slow waves. Areas of restricted diffusion in right dorsal thalamus was observed in cranial magnetic resonance imaging (MRI). Despite supportive therapy, the patient's neurological condition worsened. Follow-up EEG displayed paroxysmal lateralizing epileptiform discharges (PLEDs) in the right hemisphere and T2-hyperintense lesions in the right temporoparietal cortex, insula and thalamus with components of cytotoxic and vasogenic edema were observed in MRI. A cerebrospinal fluid (CSF)-serum pair was evaluated to identify potential causes of encephalitis. CSF biochemical and microscopic findings were within normal limits except for decreased glucose levels. Bacterial, mycobacterial and fungal cultures, antigen assays and polymerase

  3. Cardiac Safety of Modified Vaccinia Ankara for Vaccination against Smallpox in a Young, Healthy Study Population

    PubMed Central

    Zitzmann-Roth, Eva-Maria; von Sonnenburg, Frank; de la Motte, Stephan; Arndtz-Wiedemann, Nathaly; von Krempelhuber, Alfred; Uebler, Nadine; Vollmar, Jens; Virgin, Garth; Chaplin, Paul

    2015-01-01

    Background Conventional smallpox vaccines based on replicating vaccinia virus (VV) strains (e.g. Lister Elstree, NYCBOH) are associated with a high incidence of myo-/pericarditis, a severe inflammatory cardiac complication. A new smallpox vaccine candidate based on a non-replicating Modified Vaccinia Ankara (MVA) poxvirus has been assessed for cardiac safety in a large placebo-controlled clinical trial. Methods Cardiac safety of one and two doses of MVA compared to placebo was assessed in 745 healthy subjects. Vaccinia-naïve subjects received either one dose of MVA and one dose of placebo, two doses of MVA, or two doses of placebo by subcutaneous injection four weeks apart; vaccinia-experienced subjects received a single dose of MVA. Solicited and unsolicited adverse events (AE) and cardiac safety parameters (recorded as Adverse Events of Special Interest, AESI) were monitored after each injection. Results A total of 5 possibly related AESI (3 cases of palpitations, 2 of tachycardia) were reported during the study. No case of myo- or pericarditis occurred. One possibly related serious AE (SAE) was reported during the 6-month follow-up period (sarcoidosis). The most frequently observed AEs were injection site reactions. Conclusions Vaccination with MVA was safe and well tolerated and did not increase the risk for development of myo-/pericarditis. Trial Registration ClinicalTrials.gov NCT00316524 PMID:25879867

  4. Assessment of traumatic deaths in a level one trauma center in Ankara, Turkey.

    PubMed

    Arslan, E D; Kaya, E; Sonmez, M; Kavalci, C; Solakoglu, A; Yilmaz, F; Durdu, T; Karakilic, E

    2015-06-01

    Trauma management shows significant progress in last decades. Determining the time and place of deaths indicate where to focus to improve our knowledge about trauma. We conducted this retrospective study from data of trauma victims who were brought to a major tertiary hospital which is a level one trauma center in Ankara, Turkey, and died even if during transport or in the hospital between 1 March 2010 and 1 March 2013. The patients' demographic characteristics, trauma mechanisms, time frames and causes of deaths determined by physicians were recorded. Traumas were grouped as "high energy trauma" (HET) and "low energy trauma" (LET). Falls from ground level were defined as LET. 209 traumatic deaths due to trauma or trauma-related conditions were found in the study period. 161 of 209 (78 %) patients suffered from HET. Motor vehicle collisions (MVC) (56 %) were the most common mechanism of trauma followed by burns (16 %), falls (11 %), gunshots (9 %) and stabs (6 %) in this group and traumatic brain injuries (TBI) (41 %) were the most common cause of death followed by circulatory collapse (22 %) and multi-organ failure (20 %). 36 % of deaths occurred before arrival at hospital, 25 % in the first 24 h of admission, 18 % between 2nd and 7th day and 21 % after first week. Trimodal distribution of traumatic deaths was not valid for all types of injuries and the most important factor to decrease traumatic deaths is still prevention. Also we have to keep on searching to improve our knowledge about trauma management. PMID:26037980

  5. High level protein expression in mammalian cells using a safe viral vector: modified vaccinia virus Ankara.

    PubMed

    Hebben, Matthias; Brants, Jan; Birck, Catherine; Samama, Jean-Pierre; Wasylyk, Bohdan; Spehner, Danièle; Pradeau, Karine; Domi, Arban; Moss, Bernard; Schultz, Patrick; Drillien, Robert

    2007-12-01

    Vaccinia virus vectors are attractive tools to direct high level protein synthesis in mammalian cells. In one of the most efficient strategies developed so far, the gene to be expressed is positioned downstream of a bacteriophage T7 promoter within the vaccinia genome and transcribed by the T7 RNA polymerase, also encoded by the vaccinia virus genome. Tight regulation of transcription and efficient translation are ensured by control elements of the Escherichia coli lactose operon and the encephalomyocarditis virus leader sequence, respectively. We have integrated such a stringently controlled expression system, previously used successfully in a standard vaccinia virus backbone, into the modified vaccinia virus Ankara strain (MVA). In this manner, proteins of interest can be produced in mammalian cells under standard laboratory conditions because of the inherent safety of the MVA strain. Using this system for expression of beta-galactosidase, about 15 mg protein could be produced from 10(8) BHK21 cells over a 24-h period, a value 4-fold higher than the amount produced from an identical expression system based on a standard vaccinia virus strain. In another application, we employed the MVA vector to produce human tubulin tyrosine ligase and demonstrate that this protein becomes a major cellular protein upon induction conditions and displays its characteristic enzymatic activity. The MVA vector should prove useful for many other applications in which mammalian cells are required for protein production. PMID:17892951

  6. Modified vaccinia virus Ankara as a vaccine against feline coronavirus: immunogenicity and efficacy.

    PubMed

    Hebben, Matthias; Duquesne, Véronique; Cronier, Joëlle; Rossi, Bernard; Aubert, André

    2004-04-01

    Feline infectious peritonitis virus (FIPV) is a coronavirus that induces a fatal systemic disease mediated by an inappropriate immune response. Most previous vaccination attempts against FIPV were unsuccessful because IgG antibodies against the surface protein enhance the infection. However, two studies have shown that poxvirus vectors (vaccinia WR and canarypox) expressing only the FIPV membrane (M) protein can elicit a partially protective immunity which is supposed to be cell-mediated (Virology 181 (1991) 327; International patent WO 97/20054 (1997)). In our study, we report the construction of another poxvirus, the modified vaccinia virus Ankara (MVA), as an expression vector for the FIPV M protein. In this vector, the M gene has been inserted downstream a strong early/late promoter, whereas the two previously described poxviruses expressed the M protein during their early stage only. The immunogenicity of the recombinant MVA-M was evaluated in the murine model which revealed an effect of the vector on the Th1/Th2 balance. The vaccine was then tested in cats to evaluate its efficacy in an FIPV 79-1146 challenge. Vaccinated kittens developed FIPV-specific antibodies after immunization, however, none of them was protected against FIPV. Our results suggest a crucial role for the type of poxviral promoter that must be used to induce an effective immune response against FIPV. PMID:15123156

  7. Safety and Immunogenicity of Modified Vaccinia Ankara (ACAM3000): Effect of Dose and Route of Administration

    PubMed Central

    Wilck, Marissa B.; Seaman, Michael S.; Baden, Lindsey R.; Walsh, Stephen R.; Grandpre, Lauren E.; Devoy, Colleen; Giri, Ayush; Kleinjan, Jane A.; Noble, Lizanne C.; Stevenson, Kristen E.; Kim, Haesook T.; Dolin, Raphael

    2010-01-01

    Background We conducted a clinical trial of the safety and immunogenicity of Modified Vaccinia Ankara (ACAM3000 MVA) to examine the effects of dose and route of administration. Methods Seventy-two healthy, vaccinia-naïve subjects received one of six regimens of MVA or placebo in two administrations one month apart. Results MVA was generally well tolerated at all dose levels and by all routes. More pronounced local reactogenicity was seen by the intradermal (ID) and subcutaneous (SC) routes than by intramuscular (IM) administration. Binding antibodies to whole virus and neutralizing antibodies to IMV and EEV forms of vaccinia virus (VV) were elicited by all routes of MVA administration, and were greater for the higher dose by each route. Similar levels of neutralizing antibodies were seen at a ten-fold lower dose given ID (107 TCID50), compared to responses after 108 TCID50 given IM or SC. T-cell immune responses to VV were detected by IFN-γ ELISPOT, but had no clear relationship to dose or route. Conclusion These data suggest that ID immunization with MVA provides a dose sparing effect by eliciting antibody responses similar in magnitude and kinetics to those elicited by IM or SC routes, but at a 10-fold lower dose. PMID:20350191

  8. Transparent 3D Visualization of Archaeological Remains in Roman Site in Ankara-Turkey with Ground Penetrating Radar Method

    NASA Astrophysics Data System (ADS)

    Kadioglu, S.

    2009-04-01

    Transparent 3D Visualization of Archaeological Remains in Roman Site in Ankara-Turkey with Ground Penetrating Radar Method Selma KADIOGLU Ankara University, Faculty of Engineering, Department of Geophysical Engineering, 06100 Tandogan/ANKARA-TURKEY kadioglu@eng.ankara.edu.tr Anatolia has always been more the point of transit, a bridge between West and East. Anatolia has been a home for ideas moving from all directions. So it is that in the Roman and post-Roman periods the role of Anatolia in general and of Ancyra (the Roman name of Ankara) in particular was of the greatest importance. Now, the visible archaeological remains of Roman period in Ankara are Roman Bath, Gymnasium, the Temple of Augustus of Rome, Street, Theatre, City Defence-Wall. The Caesar Augustus, the first Roman Emperor, conquered Asia Minor in 25 BC. Then a marble temple was built in Ancyra, the administrative capital of province, today the capital of Turkish Republic, Ankara. This monument was consecrated to the Empreror and to the Goddess Rome. This temple is supposed to have built over an earlier temple dedicated to Kybele and Men between 25 -20 BC. After the death of the Augustus in 14AD, a copy of the text of "Res Gestae Divi Augusti" was inscribed on the interior of the pronaos in Latin, whereas a Greek translation is also present on an exterior wall of the cella. In the 5th century, it was converted in to a church by the Byzantines. The aim of this study is to determine old buried archaeological remains in the Augustus temple, Roman Bath and in the governorship agora in Ulus district. These remains were imaged with transparent three dimensional (3D) visualization of the ground penetrating radar (GPR) data. Parallel two dimensional (2D) GPR profile data were acquired in the study areas, and then a 3D data volume were built using parallel 2D GPR data. A simplified amplitude-colour range and appropriate opacity function were constructed and transparent 3D image were obtained to activate buried

  9. Recent Stratospheric Ozone Measurements over Ankara-Turkey and Evaluation of Ozone Profiles

    NASA Astrophysics Data System (ADS)

    Ozkizilkaya, O.; Incecik, S.; Kahya, C.

    2009-04-01

    Satellite, spectrophotometer and ozonesonde measurement systems are widely used to determine total column of ozone and its properties in troposphere and stratosphere. The differences between these measurement systems are the main research areas in terms of their techniques and results. The present study deals with to compare of satellite total ozone measurements from OMI and SEVIRI instruments, Brewer MKIII spectrophotometer and ECC ozonesonde total ozone measurements and to make an assessment of the ozone in troposphere and stratosphere using ECC and Brewer ozone profiles over Ankara (39o55´N; 32o55´E) located at the centre of Anatolia. In this study, Brewer MKIII, OMI and SEVIRI total ozone data of Ankara for the period January -December 2007 were used to make an intercomparison of monthly average total ozone measurements. The percentage differences between the data sets were calculated. It is aimed to define which remote sensing measurement techniques give the most accurate and reliable results. In order to verify the data obtained by remote sensing methods, 21 daily ECC total ozone measurements for the same period were used. Brewer, OMI and SEVIRI measurements available for the corresponding days were taken into account. Furthermore, in order to understand atmospheric ozone content, a total ozone retrieval algorithm from ECC sounding was applied to both troposphere and stratosphere to determine the ozone contents. According to the comparisons, it was found that Brewer and OMI monthly average total ozone measurements show good agreement but SEVIRI overestimates; maximum differences between the measurements occur mostly between July and October. Maximum percentage differences between Brewer and OMI, SEVIRI and Brewer, SEVIRI and OMI were found -7.3%, 17% and 17% respectively. The mean absolute differences between Brewer and OMI were calculated as 2.4%; on the other hand SEVIRI has 10.4% mean absolute difference from Brewer and OMI. The results of the comparison

  10. Geochemistry and Geochronology of Oceanic Rock Assemblages in the Izmir-Ankara-Erzincan Suture Zone, Turkey

    NASA Astrophysics Data System (ADS)

    Sarifakioglu, Ender; Dilek, Yildirim; Sevin, Mustafa

    2013-04-01

    We report here new data from the Izmir-Ankara-Erzincan Suture Zone (IAESZ), which connects the Vardar Suture Zone in the west with the Sevan-Akera Suture Zone in the east. It occurs between the Sakarya Continent and the Anatolide-Tauride ribbon continent in Turkey, and consists mainly of ophiolitic thrust sheets emplaced into a subduction-accretion mélange. The ophiolites include upper mantle peridotites, cumulate to massive gabbros, sheeted doleritic dykes, plagiogranite dykes and stocks, and basalt-chert-radiolarite as in a complete Penrose-type ophiolite pseudostratigraphy. They display a geochemical progression in their magmatic evolution from initially MORB-like to island arc tholeiites (IAT) to boninites, similar to many other Tethyan ophiolites in the eastern Mediterranean region. Boninitic dykes and volcanic rocks have very low TiO2 (0.03-0.50 wt.%), Nb (0.03-1.9 ppm), Y (1,9-10.7ppm) and Zr (4.10-42 ppm) values. IAT-type doleritic dykes and basaltic lavas contain low TiO2 (0.42-1.04 wt.%), Nb (0.90-2.7 wt.%), Y (9.7-33.3 ppm) and Zr (12.7-85 ppm). The TiO2 (0.81-2.60 wt.%), Nb (3.30-4.8 ppm), Y (22.6-63.8 ppm) and Zr (36.01-179.33 ppm) contents of the MORB-like basaltic rocks are higher than those in the IAT and boninitic lavas. The subduction-accretion mélange (Ankara Mélange) in the central part of the IAESZ, includes volcanic mega-blocks derived from seamounts and/or an oceanic plateau that have OIB and P-MORB geochemical characteristics. This subduction-accretion complex also contains blocks of MORB- and/or IAT-like ophiolite fragments within a matrix composed of serpentinite, altered volcanics-volcaniclastics and/or pelitic sedimentary rocks. Pegmatitic gabbros in the ophiolites in the western and eastern IAESZ reveal 40Ar-39Ar hornblende ages of 168.9Ma and 195.7±2.7Ma, respectively. Plagiogranite dykes in the central and eastern parts of the IAESZ are 180 Ma and 179±2 Ma to 180.1±2.4 Ma in age as determined from U-Pb from zircon dates. The

  11. Modified Vaccinia Virus Ankara Encoding Influenza Virus Hemagglutinin Induces Heterosubtypic Immunity in Macaques

    PubMed Central

    Florek, Nicholas W.; Weinfurter, Jason T.; Jegaskanda, Sinthujan; Brewoo, Joseph N.; Powell, Tim D.; Young, Ginger R.; Das, Subash C.; Hatta, Masato; Broman, Karl W.; Hungnes, Olav; Dudman, Susanne G.; Kawaoka, Yoshihiro; Kent, Stephen J.; Stinchcomb, Dan T.

    2014-01-01

    ABSTRACT Current influenza virus vaccines primarily aim to induce neutralizing antibodies (NAbs). Modified vaccinia virus Ankara (MVA) is a safe and well-characterized vector for inducing both antibody and cellular immunity. We evaluated the immunogenicity and protective efficacy of MVA encoding influenza virus hemagglutinin (HA) and/or nucleoprotein (NP) in cynomolgus macaques. Animals were given 2 doses of MVA-based vaccines 4 weeks apart and were challenged with a 2009 pandemic H1N1 isolate (H1N1pdm) 8 weeks after the last vaccination. MVA-based vaccines encoding HA induced potent serum antibody responses against homologous H1 or H5 HAs but did not stimulate strong T cell responses prior to challenge. However, animals that received MVA encoding influenza virus HA and/or NP had high frequencies of virus-specific CD4+ and CD8+ T cell responses within the first 7 days of H1N1pdm infection, while animals vaccinated with MVA encoding irrelevant antigens did not. We detected little or no H1N1pdm replication in animals that received vaccines encoding H1 (homologous) HA, while a vaccine encoding NP from an H5N1 isolate afforded no protection. Surprisingly, H1N1pdm viral shedding was reduced in animals vaccinated with MVA encoding HA and NP from an H5N1 isolate. This reduced shedding was associated with cross-reactive antibodies capable of mediating antibody-dependent cellular cytotoxicity (ADCC) effector functions. Our results suggest that ADCC plays a role in cross-protective immunity against influenza. Vaccines optimized to stimulate cross-reactive antibodies with ADCC function may provide an important measure of protection against emerging influenza viruses when NAbs are ineffective. IMPORTANCE Current influenza vaccines are designed to elicit neutralizing antibodies (NAbs). Vaccine-induced NAbs typically are effective but highly specific for particular virus strains. Consequently, current vaccines are poorly suited for preventing the spread of newly emerging

  12. The impact of anti-smoking laws on high school students in Ankara, Turkey

    PubMed Central

    Demir, Melike; Karadeniz, Gulistan; Demir, Fikri; Karadeniz, Cem; Kaya, Halide; Yenibertiz, Derya; Taylan, Mahsuk; Yilmaz, Sureyya; Sen, Velat

    2015-01-01

    ABSTRACT OBJECTIVE: To determine the factors affecting the smoking habits of high school students, their thoughts about changes resulting from anti-smoking laws, and how they are affected by those laws. METHODS: In this cross-sectional study, 11th-grade students at eight high schools in Ankara, Turkey, were invited to complete a questionnaire. RESULTS: A total of 1,199 students completed the questionnaire satisfactorily. The mean age of the respondents was 17.0 ± 0.6 years; 56.1% were female, of whom 15.3% were smokers; and 43.9% were male, of whom 43.7% were smokers (p < 0.001). The independent risk factors for smoking were male gender, attending a vocational school, having a sibling who smokes, having a friend who smokes, and poor academic performance. Of the respondents, 74.7% were aware of the content of anti-smoking laws; 81.8% approved of the restrictions and fines; and 8.1% had quit smoking because of those laws. According to the respondents, the interventions that were most effective were the (television) broadcast of films about the hazards of smoking and the ban on cigarette sales to minors. The prevalence of smoking was highest (31.5%) among students attending vocational high schools but lowest (7.5%) among those attending medical vocational high schools. Although 57.1% of the smokers were aware of the existence of a smoking cessation helpline, only 3.7% had called, none of whom had made any attempt to quit smoking. CONCLUSIONS: Although most of the students evaluated were aware of the harmful effects of smoking and approved of the anti-smoking laws, only a minority of those who smoked sought professional help to quit. PMID:26785961

  13. Future River Flow Estimations of Gerede-Ulusu River, Ankara, Turkey

    NASA Astrophysics Data System (ADS)

    Kentel, E.

    2009-12-01

    Increase in population, industrialization and urbanization causes water demand to increase. However, due to unplanned water resources utilization and environmental factors such as global warming, the increasing water demand can not be supplied by the available sources. Ankara, Turkey experienced this situation in the past years which resulted in water shortages in the city in 2007. As a temporary solution to this problem, a water transmission line was installed from Hirfanli Dam and water was pumped to Camlidere Dam reservoir. However, the authorities believe this is not a permanent solution; thus alternative water resources need to be investigated and included in the future management plans. As an alternative, transmitting water from Gerede-Ulusu River to Camlidere Dam is being considered. To be able to identify safe amount of water that will be available for transmission to Camlidere Dam, future river flow regime of Gerede-Ulusu River need to be assessed. An artificial neural network model is developed to estimate future monthly flow values of Gerede-Ulusu River. Past precipitation and river flow data, and the associated month are used to predict future river flows. One critical issue in water resources planning and management is determination of the reliability of the estimates. One of the major weaknesses of artificial neural network models is that they may fail to generate good estimates for extreme events, i.e. events that do not occur at all or often enough in the training set. If reliable estimates can be distinguished from unreliable ones, the former can be used with greater confidence in planning and management of the water resources. A fuzzy c-means algorithm is used in this study to cluster the estimates of the artificial neural networks into reliable and less-reliable river flow values. Key words: River flow estimation; Artificial Neural Network; fuzzy c-means clustering

  14. [Determination of hepatitis B virus genotypes by DNA sequence analysis in patients from Ankara, Turkey].

    PubMed

    Külah, Canan; Cirak, Meltem Yalinay

    2010-04-01

    Hepatitis B virus (HBV) genotypes vary depending on the geographical region. The HBV genotype determined in Turkey has been genotype D which is found as the homogenously disseminated single genotype. The aim of this study was to determine HBV genotypes in a group of HBV infected patients who were admitted to a university hospital in Ankara, Turkey. Serum samples from HBsAg positive and anti-HBs negative 84 (52 male, 32 female) patients with HBV infection were included into the study. Anti-HBc was positive in 95.2%, HBeAg was positive in 47.6% and anti-HBe was positive in 11.9% of the patients. Mean HBV-DNA levels of the patients were 5.7 x 10(7) +/- 4.6 x 10(7) IU/ml; mean ALT levels were 131 +/- 171 IU/ml and mean AST levels were 98 +/- 170 IU/ml. HBV-DNA was extracted from serum by the phenol-chloroform method and PCR was performed to amplify the S gene region of HBV-DNA. Cycle sequencing of PCR products was performed by a commercial "Cy5/Cy5.5 Dye Primer Cycle Sequencing Kit" (Visible Genetics, Canada) based on dideoxy chain termination method. The sequences were read and analyzed in an automated fluorescence-based DNA-sequencing system (Long-Read Tower System, Visible Genetics, Canada). The nucleotide sequences of the patient samples were compared with the previously reported sequences in gene bank for each genotype. According to the comparative analysis of S-sequences of all patient samples with the published sequences of the genotypes in gene bank, all of the 84 hepatitis B strains (100%) were shown to be related to D genotypic group, subtype ayw. A phylogenetic analysis was performed and phylogenetic trees were constructed using programs in the PHYLIP phylogeny inference package. The patient samples clustered within the genotypic group D. According to these results, the main HBV genotype in our patients was genotype D in accordance with the previous molecular epidemiologic information on HBV in this geographic area. HBV genotype determination may help to

  15. Late Jurassic-Early Cretaceous radiolarian age constraints from the sedimentary cover of the Amasia ophiolite (NW Armenia), at the junction between the Izmir-Ankara-Erzinçan and Sevan-Hakari suture zones

    NASA Astrophysics Data System (ADS)

    Danelian, T.; Asatryan, G.; Galoyan, Gh.; Sahakyan, L.; Stepanyan, J.

    2016-01-01

    The Amasia ophiolite, situated at the northernmost corner of Armenia, is part of the Sevan-Hakari suture zone which links with the Izmir-Ankara-Erzinçan suture zone in northern Turkey. Three new radiolarian assemblages have been extracted from siliceous sedimentary rocks that accumulated on the Amasia ophiolite in an oceanic setting. Two of these assemblages were extracted from red-brownish bedded cherts overlying basaltic lavas; one of these is likely to be middle Oxfordian to early Kimmeridgian in age, while the second correlates with the Berriasian. Similar time-equivalent lava-chert sequences have been dated recently using radiolarians from the Stepanavan, Vedi and Sevan ophiolite units, where they are considered to relate to submarine volcanic activity in the back-arc marginal basin in which the Armenian ophiolites were formed. The third radiolarian assemblage, of late Barremian age, was extracted from a more than 15-m-thick volcaniclastic-chert sequence. The related volcanic activity is likely to have been subaerial and probably relates to the formation of an oceanic volcanic plateau; no Cretaceous subaerial volcanism has been previously recorded in the Lesser Caucasus area.

  16. Expanding the Repertoire of Modified Vaccinia Ankara-Based Vaccine Vectors via Genetic Complementation Strategies

    PubMed Central

    Garber, David A.; O'Mara, Leigh A.; Zhao, Jun; Gangadhara, Sailaja; An, InChul; Feinberg, Mark B.

    2009-01-01

    Background Modified Vaccinia virus Ankara (MVA) is a safe, highly attenuated orthopoxvirus that is being developed as a recombinant vaccine vector for immunization against a number of infectious diseases and cancers. However, the expression by MVA vectors of large numbers of poxvirus antigens, which display immunodominance over vectored antigens-of-interest for the priming of T cell responses, and the induction of vector-neutralizing antibodies, which curtail the efficacy of subsequent booster immunizations, remain as significant impediments to the overall utility of such vaccines. Thus, genetic approaches that enable the derivation of MVA vectors that are antigenically less complex may allow for rational improvement of MVA-based vaccines. Principal Findings We have developed a genetic complementation system that enables the deletion of essential viral genes from the MVA genome, thereby allowing us to generate MVA vaccine vectors that are antigenically less complex. Using this system, we deleted the essential uracil-DNA-glycosylase (udg) gene from MVA and propagated this otherwise replication-defective variant on a complementing cell line that constitutively expresses the poxvirus udg gene and that was derived from a newly identified continuous cell line that is permissive for growth of wild type MVA. The resulting virus, MVAΔudg, does not replicate its DNA genome or express late viral gene products during infection of non-complementing cells in culture. As proof-of-concept for immunological ‘focusing’, we demonstrate that immunization of mice with MVAΔudg elicits CD8+ T cell responses that are directed against a restricted repertoire of vector antigens, as compared to immunization with parental MVA. Immunization of rhesus macaques with MVAΔudg-gag, a udg− recombinant virus that expresses an HIV subtype-B consensus gag transgene, elicited significantly higher frequencies of Gag-specific CD8 and CD4 T cells following both primary (2–4-fold) and booster (2

  17. Jurassic-Paleogene intra-oceanic magmatic evolution of the Ankara Mélange, North-Central Anatolia, Turkey

    NASA Astrophysics Data System (ADS)

    Sarifakioglu, E.; Dilek, Y.; Sevin, M.

    2013-11-01

    Oceanic rocks in the Ankara Mélange along the Izmir-Ankara-Erzincan suture zone (IAESZ) in North-Central Anatolia include locally coherent ophiolite complexes (~179 Ma and ~80 Ma), seamount or oceanic plateau volcanic units with pelagic and reefal limestones (96.6 ± 1.8 Ma), metamorphic rocks with ages of 187.4 ± 3.7 Ma, 158.4 ± 4.2 Ma, and 83.5 ± 1.2 Ma, and subalkaline to alkaline volcanic and plutonic rocks of an island arc origin (~67-63 Ma). All but the arc rocks occur in a shaly-graywacke and/or serpentinite matrix, and are deformed by south-vergent thrust faults and folds that developed in the Middle to Late Eocene due to continental collisions in the region. Ophiolitic volcanic rocks have mid-ocean ridge (MORB) and island arc tholeiite (IAT) affinities showing moderate to significant LILE enrichment and depletion in Nb, Hf, Ti, Y and Yb, which indicate the influence of subduction-derived fluids in their melt evolution. Seamount/oceanic plateau basalts show ocean island basalt (OIB) affinities. The arc-related volcanic rocks, lamprophyric dikes and syeno-dioritic plutons exhibit high-K shoshonitic to medium-to high-K calc-alkaline compositions with strong enrichment in LILE, REE and Pb, and initial ϵNd values between +1.3 and +1.7. Subalkaline arc volcanic units occur in the northern part of the mélange, whereas the younger alkaline volcanic rocks and intrusions (lamprophyre dikes and syeno-dioritic plutons) in the southern part. The Early to Late Jurassic and Late Cretaceous epidote-actinolite, epidote-chlorite and epidote-glaucophane schists represent the metamorphic units formed in a subduction channel in the Northern Neotethys. The Middle to Upper Triassic neritic limestones spatially associated with the seamount volcanic rocks indicate that the Northern Neotethys was an open ocean with its MORB-type oceanic lithosphere by the Early Triassic. The Latest Cretaceous-Early Paleocene island arc volcanic, dike and plutonic rocks with

  18. Jurassic-Paleogene intraoceanic magmatic evolution of the Ankara Mélange, north-central Anatolia, Turkey

    NASA Astrophysics Data System (ADS)

    Sarifakioglu, E.; Dilek, Y.; Sevin, M.

    2014-02-01

    Oceanic rocks in the Ankara Mélange along the Izmir-Ankara-Erzincan suture zone (IAESZ) in north-central Anatolia include locally coherent ophiolite complexes (∼ 179 Ma and ∼ 80 Ma), seamount or oceanic plateau volcanic units with pelagic and reefal limestones (96.6 ± 1.8 Ma), metamorphic rocks with ages of 256.9 ± 8.0 Ma, 187.4 ± 3.7 Ma, 158.4 ± 4.2 Ma, and 83.5 ± 1.2 Ma indicating northern Tethys during the late Paleozoic through Cretaceous, and subalkaline to alkaline volcanic and plutonic rocks of an island arc origin (∼ 67-63 Ma). All but the arc rocks occur in a shale-graywacke and/or serpentinite matrix, and are deformed by south-vergent thrust faults and folds that developed in the middle to late Eocene due to continental collisions in the region. Ophiolitic volcanic rocks have mid-ocean ridge (MORB) and island arc tholeiite (IAT) affinities showing moderate to significant large ion lithophile elements (LILE) enrichment and depletion in Nb, Hf, Ti, Y and Yb, which indicate the influence of subduction-derived fluids in their melt evolution. Seamount/oceanic plateau basalts show ocean island basalt (OIB) affinities. The arc-related volcanic rocks, lamprophyric dikes and syenodioritic plutons exhibit high-K shoshonitic to medium- to high-K calc-alkaline compositions with strong enrichment in LILE, rare earth elements (REE) and Pb, and initial ɛNd values between +1.3 and +1.7. Subalkaline arc volcanic units occur in the northern part of the mélange, whereas the younger alkaline volcanic rocks and intrusions (lamprophyre dikes and syenodioritic plutons) in the southern part. The late Permian, Early to Late Jurassic, and Late Cretaceous amphibole-epidote schist, epidote-actinolite, epidote-chlorite and epidote-glaucophane schists represent the metamorphic units formed in a subduction channel in the northern Neotethys. The Middle to Upper Triassic neritic limestones spatially associated with the seamount volcanic rocks indicate that the northern

  19. The Largest Ten Heat Waves Over Ankara Between 1965-2006 and Their Simulations by WRF-ARW

    NASA Astrophysics Data System (ADS)

    Aktas, D.; Ünal, Y.

    2011-12-01

    Global climate change is one of the greatest environmental, economical and social threats. Ecosystems and various sectors of human activities are very sensitive to extreme events such as floods, droughts, heat waves and cold spells. Even relatively small changes in means and variations of climate variables can induce considerable changes in the severity of extreme events. The purpose of this study is to determine the heat waves affecting the capital city of Turkey, Ankara, from observational records and to simulate the selected cases by using meso-scale atmospheric model of WRF-ARW. Here, we used maximum temperatures and 2:00 pm relative humidity data to calculate the daily apparent temperatures (heat index) for the 1965-2006-summer period following Steadman heat index formula (Steadman, 1984). Then, the heat waves were identified by using the apparent temperatures and defined as the period in which the apparent temperatures exceed the 90th percentile for at least three consecutive days. We have found that there were 49 heat waves in summer months between 1965 and 2006 in Ankara. Statistical analyses show that both the frequency of heat waves and the number of days within the heat waves have been increased from 1965 to 2006. Among 49 cases, ten extreme heat waves were selected for simulation. WRF-ARW model are used in three nested domain forms with the highest resolution of 3km. It is initialized and forced from the lateral boundaries by NNRP data set. The simulations show that during heat wave events, Arabian low and extended Azores high through the central Mediterranean play crucial role on the transport of warm and humid air towards Ankara region. Also, Arabian low deepens and extends towards eastern part of Turkey. It is found that the soil moisture around the region and precipitation regime of the previous seasons (spring and winter) also control the number of the days in which the apparent temperatures exceeding the 90th percentile value. Our findings suggest

  20. Evaluation of modified vaccinia virus Ankara expressing VP2 protein of infectious bursal disease virus as an immunogen in chickens.

    PubMed

    Zanetti, Flavia Adriana; Del Médico Zajac, María Paula; Taboga, Oscar Alberto; Calamante, Gabriela

    2012-06-01

    A recombinant modified vaccinia Ankara (MVA) virus expressing mature viral protein 2 (VP2) of the infectious bursal disease virus (IBDV) was constructed to develop MVA-based vaccines for poultry. We demonstrated that this recombinant virus was able to induce a specific immune response by observing the production of anti-IBDV-seroneutralizing antibodies in specific pathogen-free chickens. Besides, as the epitopes of VP2 responsible to induce IBDV-neutralizing antibodies are discontinuous, our results suggest that VP2 protein expressed from MVA-VP2 maintained the correct conformational structure. To our knowledge, this is the first report on the usefulness of MVA-based vectors for developing recombinant vaccines for poultry. PMID:22705743

  1. [Brucellosis, tularemia and borreliosis isolated from wild animals captured in Ankara, Konya, Urfa and Nevsehir provinces in Turkey].

    PubMed

    Ozsan, K; Fazh, A; Aktan, M; Beyoğlu, K

    1976-10-01

    621 citellus, 41 Mus musculus, 35 microtus, 442 meriones, 70 Rattus rattus, 56 turtle, 89 hare, 1 hamster, 1 hedgehog and 1 sea snake, altogether 1379 wild animals were captured in Ankara, Konya, Urfa and Nevşehir. Neither Brucella or Francisella tularansis could be isolated nor borrelia could be seen. 1/40-1/80 agglutination titers obtained in 3 out of 134 sera taken from citellus, in 3 out of 264 sera taken from guinea pigs which were inoculated with spleen, liver and kidney suspensions of wild animals. 1/40-1/80 agglutination titers obtained against brucella antigen in 3 out of 125 sera taken from citellus. No significant agglutination titers could be obtained in 35 sera taken from guinea pigs which were inoculated with the organ suspensions of wild animals. In blood samples of 2 citellus few trypanosoma were detected. PMID:979704

  2. Evaluation of modified vaccinia virus Ankara expressing VP2 protein of infectious bursal disease virus as an immunogen in chickens

    PubMed Central

    Zajac, María Paula Del Médico; Taboga, Oscar Alberto; Calamante, Gabriela

    2012-01-01

    A recombinant modified vaccinia Ankara (MVA) virus expressing mature viral protein 2 (VP2) of the infectious bursal disease virus (IBDV) was constructed to develop MVA-based vaccines for poultry. We demonstrated that this recombinant virus was able to induce a specific immune response by observing the production of anti-IBDV-seroneutralizing antibodies in specific pathogen-free chickens. Besides, as the epitopes of VP2 responsible to induce IBDV-neutralizing antibodies are discontinuous, our results suggest that VP2 protein expressed from MVA-VP2 maintained the correct conformational structure. To our knowledge, this is the first report on the usefulness of MVA-based vectors for developing recombinant vaccines for poultry. PMID:22705743

  3. [Tuberculosis Laboratory Surveillance Network (TuLSA) study group. The first step for national tuberculosis laboratory surveillance: Ankara, 2011].

    PubMed

    Sezen, Figen; Albayrak, Nurhan; Özkara, Şeref; Karagöz, Alper; Alp, Alpaslan; Duyar Ağca, Filiz; İnan Süer, Asiye; Müderris, Tuba; Ceyhan, İsmail; Durmaz, Rıza; Ertek, Mustafa

    2015-04-01

    The most effective method for monitoring country-level drug resistance frequency and to implement the necessary control measures is the establishment of a laboratory-based surveillance system. The aim of this study was to summarize the follow up trend of the drug-resistant tuberculosis (TB) cases, determine the load of resistance and evaluate the capacities of laboratories depending on laboratory quality assurance system for the installation work of National Tuberculosis Laboratory Surveillance Network (TuLSA) which has started in Ankara in 2011. TuLSA studies was carried out under the coordination of National Tuberculosis Reference Laboratory (NRL) with the participation of TB laboratories and dispensaries. Specimens of TB patients, reported from health institutions, were followed in TB laboratories, and the epidemiological information was collected from the dispensaries. One isolate per patient with the drug susceptibility test (DST) results were sent to NRL from TB laboratories and in NRL the isolates were rechecked with the genotypical (MTBDRplus, Hain Lifescience, Germany) and phenotypical (MGIT 960, BD, USA) DST methods. Molecular epidemiological analysis were also performed by spoligotyping and MIRU/VNTR. Second-line DST was applied to the isolates resistant to rifampin. A total of 1276 patients were reported between January 1st to December 31th 2011, and 335 cases were defined as "pulmonary TB from Ankara province". The mean age of those patients was 43.4 ± 20 years, and 67.5% were male. Three hundred seventeen (94.6%) patients were identified as new cases. The average sample number obtained from pulmonary TB cases was 3.26 ± 2.88, and 229 (68.3%) of them was culture positive. DST was applied to all culture positive isolates; 90.4% (207/229) of cases were susceptible to the five drugs tested (ethambutol, isoniazid, pyrazinamide, rifampicin, streptomycin). Eight (3.5%) of the isolates were multidrug-resistant (MDR-TB), while no extensively drug

  4. Distribution of Spoligotyping Defined Genotypic Lineages among Drug-Resistant Mycobacterium tuberculosis Complex Clinical Isolates in Ankara, Turkey

    PubMed Central

    Kisa, Ozgul; Tarhan, Gulnur; Gunal, Selami; Albay, Ali; Durmaz, Riza; Saribas, Zeynep; Zozio, Thierry; Alp, Alpaslan; Ceyhan, Ismail; Tombak, Ahmet; Rastogi, Nalin

    2012-01-01

    Background Investigation of genetic heterogeneity and spoligotype-defined lineages of drug-resistant Mycobacterium tuberculosis clinical isolates collected during a three-year period in two university hospitals and National Tuberculosis Reference and Research Laboratory in Ankara, Turkey. Methods and Findings A total of 95 drug-resistant M. tuberculosis isolates collected from three different centers were included in this study. Susceptibility testing of the isolates to four major antituberculous drugs was performed using proportion method on Löwenstein–Jensen medium and BACTEC 460-TB system. All clinical isolates were typed by using spoligotyping and IS6110-restriction fragment length polymorphism (RFLP) methods. Seventy-three of the 95 (76.8%) drug resistant M. tuberculosis isolates were isoniazid-resistant, 45 (47.4%) were rifampicin-resistant, 32 (33.7%) were streptomycin-resistant and 31 (32.6%) were ethambutol-resistant. The proportion of multidrug-resistant isolates (MDR) was 42.1%. By using spoligotyping, 35 distinct patterns were observed; 75 clinical isolates were grouped in 15 clusters (clustering rate of 79%) and 20 isolates displayed unique patterns. Five of these 20 unique patterns corresponded to orphan patterns in the SITVIT2 database, while 4 shared types containing 8 isolates were newly created. The most prevalent M. tuberculosis lineages were: Haarlem (23/95, 24.2%), ill-defined T superfamily (22/95, 23.2%), the Turkey family (19/95, 20%; previously designated as LAM7-TUR), Beijing (6/95, 6.3%), and Latin-America & Mediterranean (LAM, 5/95 or 5.3%), followed by Manu (3/95, 3.2%) and S (1/95, 1%) lineages. Four of the six Beijing family isolates (66.7%) were MDR. A combination of IS6110-RFLP and spoligotyping reduced the clustering rate from 79% to 11.5% among the drug resistant isolates. Conclusions The results obtained showed that ill-defined T, Haarlem, the Turkey family (previously designated as LAM7-TUR family with high phylogeographical

  5. Mineralogical, geochemical and micromorphological evaluation of the Plio-Quaternary paleosols and calcretes from Karahamzall, Ankara (Central Turkey)

    NASA Astrophysics Data System (ADS)

    Küçükuysal, Ceren; Kapur, Selim

    2014-06-01

    We present the mineralogical, micromorphological, and geochemical characteristics of the paleosols and their carbonates from Karahamzall, Ankara (Central Turkey). The paleosols include calcretes of powdery to nodular forms and alternate with channel deposits. The presence of pedofeatures, such as clay cutans, floating grains, circumgranular cracks, MnO linings, secondary carbonate rims, traces of past bioturbation and remnants of root fragments are all the evidence of pedogenesis. Bw is the most common soil horizon showing subangular-angular blocky to granular or prismatic microstructures. Calcretes, on the other hand, are evaluated as semi-mature massive, nodular, tubular or powdery forms. The probable faunal and floral passages may also imply the traces of life from when these alluvial deposits were soil. The presence of early diagenetic palygorskite and dolomite together with high salinization, high calcification and low chemical index of alteration values are evidence of the formation of calcretes under arid and dry conditions. δ13C compositions of the carbonates ranging from -7.11 ‰ to -7.74 ‰ VPDB are comformable with the world pedogenic carbonates favouring the C4 vegetation; likely δ18O compositions of the carbonates are between -3.97 ‰ and -4.91 ‰ which are compatible with the paleosols formed under the influence of meteroic water in the vadose zone

  6. Modified Vaccinia Virus Ankara (MVA) as Production Platform for Vaccines against Influenza and Other Viral Respiratory Diseases

    PubMed Central

    Altenburg, Arwen F.; Kreijtz, Joost H. C. M.; de Vries, Rory D.; Song, Fei; Fux, Robert; Rimmelzwaan, Guus F.; Sutter, Gerd; Volz, Asisa

    2014-01-01

    Respiratory viruses infections caused by influenza viruses, human parainfluenza virus (hPIV), respiratory syncytial virus (RSV) and coronaviruses are an eminent threat for public health. Currently, there are no licensed vaccines available for hPIV, RSV and coronaviruses, and the available seasonal influenza vaccines have considerable limitations. With regard to pandemic preparedness, it is important that procedures are in place to respond rapidly and produce tailor made vaccines against these respiratory viruses on short notice. Moreover, especially for influenza there is great need for the development of a universal vaccine that induces broad protective immunity against influenza viruses of various subtypes. Modified Vaccinia Virus Ankara (MVA) is a replication-deficient viral vector that holds great promise as a vaccine platform. MVA can encode one or more foreign antigens and thus functions as a multivalent vaccine. The vector can be used at biosafety level 1, has intrinsic adjuvant capacities and induces humoral and cellular immune responses. However, there are some practical and regulatory issues that need to be addressed in order to develop MVA-based vaccines on short notice at the verge of a pandemic. In this review, we discuss promising novel influenza virus vaccine targets and the use of MVA for vaccine development against various respiratory viruses. PMID:25036462

  7. Immunogenicity and protective efficacy of recombinant Modified Vaccinia virus Ankara candidate vaccines delivering West Nile virus envelope antigens.

    PubMed

    Volz, Asisa; Lim, Stephanie; Kaserer, Martina; Lülf, Anna; Marr, Lisa; Jany, Sylvia; Deeg, Cornelia A; Pijlman, Gorben P; Koraka, Penelope; Osterhaus, Albert D M E; Martina, Byron E; Sutter, Gerd

    2016-04-01

    West Nile virus (WNV) cycles between insects and wild birds, and is transmitted via mosquito vectors to horses and humans, potentially causing severe neuroinvasive disease. Modified Vaccinia virus Ankara (MVA) is an advanced viral vector for developing new recombinant vaccines against infectious diseases and cancer. Here, we generated and evaluated recombinant MVA candidate vaccines that deliver WNV envelope (E) antigens and fulfil all the requirements to proceed to clinical testing in humans. Infections of human and equine cell cultures with recombinant MVA demonstrated efficient synthesis and secretion of WNV envelope proteins in mammalian cells non-permissive for MVA replication. Prime-boost immunizations in BALB/c mice readily induced circulating serum antibodies binding to recombinant WNV E protein and neutralizing WNV in tissue culture infections. Vaccinations in HLA-A2.1-/HLA-DR1-transgenic H-2 class I-/class II-knockout mice elicited WNV E-specific CD8+ T cell responses. Moreover, the MVA-WNV candidate vaccines protected C57BL/6 mice against lineage 1 and lineage 2 WNV infection and induced heterologous neutralizing antibodies. Thus, further studies are warranted to evaluate these recombinant MVA-WNV vaccines in other preclinical models and use them as candidate vaccine in humans. PMID:26939903

  8. Strong, but Age-Dependent, Protection Elicited by a Deoxyribonucleic Acid/Modified Vaccinia Ankara Simian Immunodeficiency Virus Vaccine

    PubMed Central

    Chamcha, Venkateswarlu; Kannanganat, Sunil; Gangadhara, Sailaja; Nabi, Rafiq; Kozlowski, Pamela A.; Montefiori, David C.; LaBranche, Celia C.; Wrammert, Jens; Keele, Brandon F.; Balachandran, Harikrishnan; Sahu, Sujata; Lifton, Michelle; Santra, Sampa; Basu, Rahul; Moss, Bernard; Robinson, Harriet L.; Amara, Rama Rao

    2016-01-01

    Background. In this study, we analyzed the protective efficacy of a simian immunodeficiency virus (SIV) macaque 239 (SIVmac239) analogue of the clinically tested GOVX-B11 deoxyribonucleic acid (DNA)/modified vaccinia Ankara (MVA) human immunodeficiency virus vaccine. Methods. The tested vaccine used a DNA immunogen mutated to mimic the human vaccine and a regimen with DNA deliveries at weeks 0 and 8 and MVA deliveries at weeks 16 and 32. Twelve weekly rectal challenges with 0.3 animal infectious doses of SIV sootey mangabey E660 (SIVsmE660) were administered starting at 6 months after the last immunization. Results. Over the first 6 rectal exposures to SIVsmE660, <10-year-old tripartite motif-containing protein 5 (TRIM5)α-permissive rhesus macaques showed an 80% reduction in per-exposure risk of infection as opposed to a 46% reduction in animals over 10 years old; and, over the 12 challenges, they showed a 72% as opposed to a 10% reduction. Analyses of elicited immune responses suggested that higher antibody responses in the younger animals had played a role in protection. Conclusions. The simian analogue of the GOVX-B11 HIV provided strong protection against repeated rectal challenges in young adult macaques. PMID:27006959

  9. Sensitivity analyses for the DTMs derived from Unmanned Aerial Vehicle (UAV) in gully erosion mapping: Nallihan badland area (Ankara, Turkey)

    NASA Astrophysics Data System (ADS)

    Avdan, Ugur; Gorum, Tolga; Comert, Resul; Nefeslioglu, Hakan

    2015-04-01

    The main purpose of this study is to evaluate the spatial resolutions for the Digital Terrain Models (DTMs) derived from Unmanned Aerial Vehicle (UAV) in gully erosion mapping. For the purpose, Nallihan badland area (Ankara, Turkey) was selected to be the experimental site. The investigations were carried out in 3 stages; (i) production of the DTMs having 3 cm and 9 cm spatial resolutions by using the orthophoto imagery acquired from the UAV at 97.5 m and 292.4 m altitudes, respectively, (ii) Terrestrial Laser Scanning (TLS) of the experimental site and production of the DTMs derived from the TLS data resampled at 3 cm and 9 cm spatial resolutions, and (iii) spatial and profile comparisons of the derived data. The average altitude differences were obtained on the intervals (-0.1, 0.1) m and (-0.2, 0.2) m for the comparisons between TLS-3cm and UAV-3cm, and TLS-9cm and UAV-9cm data, respectively. Additionally, considering the profile comparisons, it is revealed that depending on the decreasing of spatial resolution, the erosion rates calculated from the DTMs increase artificially.

  10. Modified vaccinia virus ankara (MVA) as production platform for vaccines against influenza and other viral respiratory diseases.

    PubMed

    Altenburg, Arwen F; Kreijtz, Joost H C M; de Vries, Rory D; Song, Fei; Fux, Robert; Rimmelzwaan, Guus F; Sutter, Gerd; Volz, Asisa

    2014-07-01

    Respiratory viruses infections caused by influenza viruses, human parainfluenza virus (hPIV), respiratory syncytial virus (RSV) and coronaviruses are an eminent threat for public health. Currently, there are no licensed vaccines available for hPIV, RSV and coronaviruses, and the available seasonal influenza vaccines have considerable limitations. With regard to pandemic preparedness, it is important that procedures are in place to respond rapidly and produce tailor made vaccines against these respiratory viruses on short notice. Moreover, especially for influenza there is great need for the development of a universal vaccine that induces broad protective immunity against influenza viruses of various subtypes. Modified Vaccinia Virus Ankara (MVA) is a replication-deficient viral vector that holds great promise as a vaccine platform. MVA can encode one or more foreign antigens and thus functions as a multivalent vaccine. The vector can be used at biosafety level 1, has intrinsic adjuvant capacities and induces humoral and cellular immune responses. However, there are some practical and regulatory issues that need to be addressed in order to develop MVA-based vaccines on short notice at the verge of a pandemic. In this review, we discuss promising novel influenza virus vaccine targets and the use of MVA for vaccine development against various respiratory viruses. PMID:25036462

  11. Exposure of newborns to aflatoxin M1 and B1 from mothers' breast milk in Ankara, Turkey.

    PubMed

    Gürbay, A; Sabuncuoğlu, S Atasayar; Girgin, G; Sahin, G; Yiğit, S; Yurdakök, M; Tekinalp, G

    2010-01-01

    Aflatoxins (AFs) are important risks for human health due to their widespread presence in foods and environment. However, contamination risk of breast milk with different pollutants including AFs is high in today's life conditions. Since breast milk is a major nutrient for infants, feeding of infants with safe milk is essential. Therefore, the objective of this study was to determine the levels of AF M(1) and B(1) in breast milk samples collected from 75 mothers in Ankara, Turkey. AF M(1) and B(1) levels were investigated by high performance liquid chromatography (HPLC) with a fluorescence detector following an extraction procedure. The limit of detection was found to be 5 ng/l. Both AFs were detected in diverse degrees in all breast milk samples: The level of AF M(1) were in the ranges of 60.90-299.99 ng/l, and AF B(1) were in the ranges of 94.50-4123.80 ng/l. These results pointed out the exposure of mothers and neonates to AF M(1) and B(1), and the necessity of further research on mycotoxin contamination both in foods and biological fluids as well as protection strategies. PMID:19850097

  12. Generation of Recombinant Modified Vaccinia Virus Ankara Encoding VP2, NS1, and VP7 Proteins of Bluetongue Virus.

    PubMed

    Marín-López, Alejandro; Ortego, Javier

    2016-01-01

    Modified Vaccinia Virus Ankara (MVA) is employed widely as an experimental vaccine vector for its lack of replication in mammalian cells and high expression level of foreign/heterologous genes. Recombinant MVAs (rMVAs) are used as platforms for protein production as well as vectors to generate vaccines against a high number of infectious diseases and other pathologies. The portrait of the virus combines desirable elements such as high-level biological safety, the ability to activate appropriate innate immune mediators upon vaccination, and the capacity to deliver substantial amounts of heterologous antigens. Recombinant MVAs encoding proteins of bluetongue virus (BTV), an Orbivirus that infects domestic and wild ruminants transmitted by biting midges of the Culicoides species, are excellent vaccine candidates against this virus. In this chapter we describe the methods for the generation of rMVAs encoding VP2, NS1, and VP7 proteins of bluetongue virus as a model example for orbiviruses. The protocols included cover the cloning of VP2, NS1, and VP7 BTV-4 genes in a transfer plasmid, the construction of recombinant MVAs, the titration of virus working stocks and the protein expression analysis by immunofluorescence and radiolabeling of rMVA infected cells as well as virus purification. PMID:26458834

  13. A genotype of modified vaccinia Ankara (MVA) that facilitates replication in suspension cultures in chemically defined medium.

    PubMed

    Jordan, Ingo; Horn, Deborah; John, Katrin; Sandig, Volker

    2013-01-01

    While vectored vaccines, based on hyperattenuated viruses, may lead to new treatment options against infectious diseases and certain cancers, they are also complex products and sometimes difficult to provide in sufficient amount and purity. To facilitate vaccine programs utilizing host-restricted poxviruses, we established avian suspension cell lines (CR and CR.pIX) and developed a robust, chemically defined, culturing process for production of this class of vectors. For one prominent member, modified vaccinia Ankara (MVA), we now describe a new strain that appears to replicate to greater yields of infectious units, especially in the cell-free supernatant of cultures in chemically defined media. The new strain was obtained by repeated passaging in CR suspension cultures and, consistent with reports on the exceptional genetic stability of MVA, sequencing of 135 kb of the viral genomic DNA revealed that only three structural proteins (A3L, A9L and A34R) each carry a single amino acid exchange (H639Y, K75E and D86Y, respectively). Host restriction in a plaque-purified isolate of the new genotype appears to be maintained in cell culture. Processing towards an injectable vaccine preparation may be simplified with this strain as a complete lysate, containing the main burden of host cell contaminants, may not be required anymore to obtain adequate yields. PMID:23337383

  14. [Modified vaccinia virus ankara (MVA)--development as recombinant vaccine and prospects for use in veterinary medicine].

    PubMed

    Volz, Asisa; Fux, Robert; Langenmayer, Martin C; Sutter, Gerd

    2015-01-01

    Poxviruses as expression vectors are widely used in medical research for the development of recombinant vaccines and molecular therapies. Here we review recent accomplishments in vaccine research using recombinant modified vaccinia virus ankara (MVA). MVA is a highly attenuated vaccinia virus strain that originated from serial tissue culture passage in chicken embryo fibroblasts more than 40 years ago. Growth adaptation to avian host cells caused deletions and mutations in the viral genome affecting about 15% of the original genetic information. In consequence, MVA is replication-deficient in cells of mammalian origin and fails to produce many of the virulence factors encoded by conventional vaccinia virus. Because of its safety for the general environment MVA can be handled under conditions of biosafety level one. Non-replicating MVA can enter any target cell and activate its molecular life cycle to express all classes of viral and recombinant genes. Therefore, recombinant MVA have been established as an extremely safe and efficient vector system for vaccine development in medical research. By now, various recombinant MVA vaccines have been found safe and immunogenic when used for phase I/II clinical testing in humans, and suitable for industrial scale production following good practice of manufacturing. Thus, there is an obvious usefulness of recombinant MVA vaccines for novel prophylactic and therapeutic approaches also in veterinary medicine. Results from first studies in companion and farm animals are highly promising. PMID:26697713

  15. Myristoylation increases the CD8+T-cell response to a GFP prototype antigen delivered by modified vaccinia virus Ankara.

    PubMed

    Marr, Lisa; Lülf, Anna-Theresa; Freudenstein, Astrid; Sutter, Gerd; Volz, Asisa

    2016-04-01

    Activation of CD8(+)T-cells is an essential part of immune responses elicited by recombinant modified vaccinia virus Ankara (MVA). Strategies to enhance T-cell responses to antigens may be particularly necessary for broadly protective immunization against influenza A virus infections or for candidate vaccines targeting chronic infections and cancer. Here, we tested recombinant MVAs that targeted a model antigen, GFP, to different localizations in infected cells. In vitro characterization demonstrated that GFP accumulated in the nucleus (MVA-nls-GFP), associated with cellular membranes (MVA-myr-GFP) or was equally distributed throughout the cell (MVA-GFP). On vaccination, we found significantly higher levels of GFP-specific CD8(+)T-cells in MVA-myr-GFP-vaccinated BALB/c mice than in those immunized with MVA-GFP or MVA-nls-GFP. Thus, myristoyl modification may be a useful strategy to enhance CD8(+)T-cell responses to MVA-delivered target antigens. PMID:26864442

  16. Strong, but Age-Dependent, Protection Elicited by a Deoxyribonucleic Acid/Modified Vaccinia Ankara Simian Immunodeficiency Virus Vaccine.

    PubMed

    Chamcha, Venkateswarlu; Kannanganat, Sunil; Gangadhara, Sailaja; Nabi, Rafiq; Kozlowski, Pamela A; Montefiori, David C; LaBranche, Celia C; Wrammert, Jens; Keele, Brandon F; Balachandran, Harikrishnan; Sahu, Sujata; Lifton, Michelle; Santra, Sampa; Basu, Rahul; Moss, Bernard; Robinson, Harriet L; Amara, Rama Rao

    2016-01-01

    Background.  In this study, we analyzed the protective efficacy of a simian immunodeficiency virus (SIV) macaque 239 (SIVmac239) analogue of the clinically tested GOVX-B11 deoxyribonucleic acid (DNA)/modified vaccinia Ankara (MVA) human immunodeficiency virus vaccine. Methods.  The tested vaccine used a DNA immunogen mutated to mimic the human vaccine and a regimen with DNA deliveries at weeks 0 and 8 and MVA deliveries at weeks 16 and 32. Twelve weekly rectal challenges with 0.3 animal infectious doses of SIV sootey mangabey E660 (SIVsmE660) were administered starting at 6 months after the last immunization. Results.  Over the first 6 rectal exposures to SIVsmE660, <10-year-old tripartite motif-containing protein 5 (TRIM5)α-permissive rhesus macaques showed an 80% reduction in per-exposure risk of infection as opposed to a 46% reduction in animals over 10 years old; and, over the 12 challenges, they showed a 72% as opposed to a 10% reduction. Analyses of elicited immune responses suggested that higher antibody responses in the younger animals had played a role in protection. Conclusions.  The simian analogue of the GOVX-B11 HIV provided strong protection against repeated rectal challenges in young adult macaques. PMID:27006959

  17. Parana basin

    SciTech Connect

    Zalan, P.V.; Wolff, S.; Conceicao, J.C.J.; Vieira, I.S.; Astolfi, M.A.; Appi, V.T.; Zanotto, O.; Neto, E.V.S.; Cerqueira, J.R.

    1987-05-01

    The Parana basin is a large intracratonic basin in South America, developed entirely on continental crust and filled with sedimentary and volcanic rocks ranging in age from Silurian to Cretaceous. It occupies the southern portion of Brazil (1,100,000 km/sup 2/ or 425,000 mi/sup 2/) and the eastern half of Paraguay (100,000 km/sup 2/ or 39,000 mi/sup 2/); its extension into Argentina and Uruguay is known as the Chaco-Parana basin. Five major depositional sequences (Silurian, Devonian, Permo-Carboniferous, Triassic, Juro-Cretaceous) constitute the stratigraphic framework of the basin. The first four are predominantly siliciclastic in nature, and the fifth contains the most voluminous basaltic lava flows of the planet. Maximum thicknesses are in the order of 6000 m (19,646 ft). The sequences are separated by basin wide unconformities related in the Paleozoic to Andean orogenic events and in the Mesozoic to the continental breakup and sea floor spreading between South America and Africa. The structural framework of the Parana basin consists of a remarkable pattern of criss-crossing linear features (faults, fault zones, arches) clustered into three major groups (N45/sup 0/-65/sup 0/W, N50/sup 0/-70/sup 0/E, E-W). The northwest- and northeast-trending faults are long-lived tectonic elements inherited from the Precambrian basement whose recurrent activity throughout the Phanerozoic strongly influenced sedimentation, facies distribution, and development of structures in the basin. Thermomechanical analyses indicate three main phases of subsidence (Silurian-Devonian, late Carboniferous-Permian, Late Jurassic-Early Cretaceous) and low geothermal gradients until the beginning of the Late Jurassic Permian oil-prone source rocks attained maturation due to extra heat originated from Juro-Cretaceous igneous intrusions. The third phase of subsidence also coincided with strong tectonic reactivation and creation of a third structural trend (east-west).

  18. Research of Stability Problems on Ankara-Konya High Speed Railway Line (Turkey) using Ground Penetrating Radar and Petrographical Methods

    NASA Astrophysics Data System (ADS)

    Kadioglu, S.; Kadioglu, Y. K.

    2012-04-01

    The aim of the study is to research the stability problems according to rock properties and their discontinuities such as fractures, faults and karstic cavities on the new high-speed railway line between the capital city Ankara and the largest city Konya in Turkey. The Ankara-Konya high speed railway including a tunnel managed from The Turkish State Railways (TCDD). Geological surveys, polarizing microscope and confocal Raman spectrometry studies were used to determine rock properties. Ground penetrating radar (GPR) method was used to determine faults, fractures and karstic cavities. The railway line has been mainly constructed on inner Tauride Ocean suture of the Central Anatolia. The basement unit of the railway line mainly has been composed of ophiolitic complex of the inner Tauride Ocean. The main lithology of this ophiolitic complex has been formed by radiolarite, pelagic sediments, dolarite, gabbro, serpentinized peridotite and limestone blocks. The Jurassic alloctonous limestone which has been thrust on the ophiolitic complex. Neogene cover young units with minor amount of Alluvium deposits have been formed by the upper litholgy in the region. The serpentinite and altered radiolarite formation are formed by lubricous ground for the railway line in the region. A RAMAC CUII GPR system was used with a bi-static 100 MHz center band shielded antenna to acquire profile data. Totaly 35 km was surveyed on different parts of the railway line by considering the results of the geologic research and petrograpical studies. When we started to study, rail construction of some parts of the line had already been completed. Therefore, during studies, we gathered the data on the backfilled way on the three parallel profiles spaced 1m apart or on the service way next to the railway line. There was a tunnel on the line. We also gathered two parallel profiles data on the tunnel and four profiles data next to the tunnel to evaluate the stability according to the discontinuities

  19. A novel naturally occurring tandem promoter in modified vaccinia virus ankara drives very early gene expression and potent immune responses.

    PubMed

    Wennier, Sonia T; Brinkmann, Kay; Steinhäußer, Charlotte; Mayländer, Nicole; Mnich, Claudia; Wielert, Ursula; Dirmeier, Ulrike; Hausmann, Jürgen; Chaplin, Paul; Steigerwald, Robin

    2013-01-01

    Modified vaccinia virus Ankara (MVA) has been shown to be suitable for the generation of experimental vaccines against cancer and infectious diseases, eliciting strong humoral and cellular immune responses. In viral vectored vaccines, strong recombinant antigen expression and timing of expression influence the quantity and quality of the immune response. Screening of synthetic and native poxvirus promoters for strong protein expression in vitro and potent immune responses in vivo led to the identification of the MVA13.5L promoter, a unique and novel naturally occurring tandem promoter in MVA composed of two 44 nucleotide long repeated motifs, each containing an early promoter element. The MVA13.5L gene is highly conserved across orthopoxviruses, yet its function is unknown. The unique structure of its promoter is not found for any other gene in the MVA genome and is also conserved in other orthopoxviruses. Comparison of the MVA13.5L promoter activity with synthetic poxviral promoters revealed that the MVA13.5L promoter produced higher levels of protein early during infection in HeLa cells and particularly in MDBK cells, a cell line in which MVA replication stops at an early stage before the expression of late genes. Finally, a recombinant antigen expressed under the control of this novel promoter induced high antibody titers and increased CD8 T cell responses in homologous prime-boost immunization compared to commonly used promoters. In particular, the recombinant antigen specific CD8 T cell responses dominated over the immunodominant B8R vector-specific responses after three vaccinations and even more during the memory phase. These results have identified the native MVA13.5L promoter as a new potent promoter for use in MVA vectored preventive and therapeutic vaccines. PMID:23951355

  20. A Novel Naturally Occurring Tandem Promoter in Modified Vaccinia Virus Ankara Drives Very Early Gene Expression and Potent Immune Responses

    PubMed Central

    Wennier, Sonia T.; Brinkmann, Kay; Steinhäußer, Charlotte; Mayländer, Nicole; Mnich, Claudia; Wielert, Ursula; Dirmeier, Ulrike; Hausmann, Jürgen; Chaplin, Paul; Steigerwald, Robin

    2013-01-01

    Modified vaccinia virus Ankara (MVA) has been shown to be suitable for the generation of experimental vaccines against cancer and infectious diseases, eliciting strong humoral and cellular immune responses. In viral vectored vaccines, strong recombinant antigen expression and timing of expression influence the quantity and quality of the immune response. Screening of synthetic and native poxvirus promoters for strong protein expression in vitro and potent immune responses in vivo led to the identification of the MVA13.5L promoter, a unique and novel naturally occurring tandem promoter in MVA composed of two 44 nucleotide long repeated motifs, each containing an early promoter element. The MVA13.5L gene is highly conserved across orthopoxviruses, yet its function is unknown. The unique structure of its promoter is not found for any other gene in the MVA genome and is also conserved in other orthopoxviruses. Comparison of the MVA13.5L promoter activity with synthetic poxviral promoters revealed that the MVA13.5L promoter produced higher levels of protein early during infection in HeLa cells and particularly in MDBK cells, a cell line in which MVA replication stops at an early stage before the expression of late genes. Finally, a recombinant antigen expressed under the control of this novel promoter induced high antibody titers and increased CD8 T cell responses in homologous prime-boost immunization compared to commonly used promoters. In particular, the recombinant antigen specific CD8 T cell responses dominated over the immunodominant B8R vector-specific responses after three vaccinations and even more during the memory phase. These results have identified the native MVA13.5L promoter as a new potent promoter for use in MVA vectored preventive and therapeutic vaccines. PMID:23951355

  1. Immunological characterization of a modified vaccinia virus Ankara vector expressing the human papillomavirus 16 E1 protein.

    PubMed

    Remy-Ziller, Christelle; Germain, Claire; Spindler, Anita; Hoffmann, Chantal; Silvestre, Nathalie; Rooke, Ronald; Bonnefoy, Jean-Yves; Préville, Xavier

    2014-02-01

    Women showing normal cytology but diagnosed with a persistent high-risk human papillomavirus (HR-HPV) infection have a higher risk of developing high-grade cervical intraepithelial neoplasia and cervical cancer than noninfected women. As no therapeutic management other than surveillance is offered to these women, there is a major challenge to develop novel targeted therapies dedicated to the treatment of these patients. As such, E1 and E2 antigens, expressed early in the HPV life cycle, represent very interesting candidates. Both proteins are necessary for maintaining coordinated viral replication and gene synthesis during the differentiation process of the epithelium and are essential for the virus to complete its normal and propagative replication cycle. In the present study, we evaluated a new active targeted immunotherapeutic, a modified vaccinia virus Ankara (MVA) vector containing the E1 sequence of HPV16, aimed at inducing cellular immune responses with the potential to help and clear persistent HPV16-related infection. We carried out an extensive comparative time course analysis of the cellular immune responses induced by different schedules of immunization in C57BL/6 mice. We showed that multiple injections of MVA-E1 allowed sustained HPV16 E1-specific cellular immune responses in vaccinated mice and had no impact on the exhaustion phenotype of the generated HPV16 E1-specific CD8⁺ T cells, but they led to the differentiation of multifunctional effector T cells with high cytotoxic capacity. This study provides proof of concept that an MVA expressing HPV16 E1 can induce robust and long-lasting E1-specific responses and warrants further development of this candidate. PMID:24307238

  2. Immunological Characterization of a Modified Vaccinia Virus Ankara Vector Expressing the Human Papillomavirus 16 E1 Protein

    PubMed Central

    Remy-Ziller, Christelle; Germain, Claire; Spindler, Anita; Hoffmann, Chantal; Silvestre, Nathalie; Rooke, Ronald; Bonnefoy, Jean-Yves

    2014-01-01

    Women showing normal cytology but diagnosed with a persistent high-risk human papillomavirus (HR-HPV) infection have a higher risk of developing high-grade cervical intraepithelial neoplasia and cervical cancer than noninfected women. As no therapeutic management other than surveillance is offered to these women, there is a major challenge to develop novel targeted therapies dedicated to the treatment of these patients. As such, E1 and E2 antigens, expressed early in the HPV life cycle, represent very interesting candidates. Both proteins are necessary for maintaining coordinated viral replication and gene synthesis during the differentiation process of the epithelium and are essential for the virus to complete its normal and propagative replication cycle. In the present study, we evaluated a new active targeted immunotherapeutic, a modified vaccinia virus Ankara (MVA) vector containing the E1 sequence of HPV16, aimed at inducing cellular immune responses with the potential to help and clear persistent HPV16-related infection. We carried out an extensive comparative time course analysis of the cellular immune responses induced by different schedules of immunization in C57BL/6 mice. We showed that multiple injections of MVA-E1 allowed sustained HPV16 E1-specific cellular immune responses in vaccinated mice and had no impact on the exhaustion phenotype of the generated HPV16 E1-specific CD8+ T cells, but they led to the differentiation of multifunctional effector T cells with high cytotoxic capacity. This study provides proof of concept that an MVA expressing HPV16 E1 can induce robust and long-lasting E1-specific responses and warrants further development of this candidate. PMID:24307238

  3. Prospective Surveillance for Cardiac Adverse Events in Healthy Adults Receiving Modified Vaccinia Ankara Vaccines: A Systematic Review

    PubMed Central

    Elizaga, Marnie L.; Vasan, Sandhya; Marovich, Mary A.; Sato, Alicia H.; Lawrence, Dale N.; Chaitman, Bernard R.; Frey, Sharon E.; Keefer, Michael C.

    2013-01-01

    Background Vaccinia-associated myo/pericarditis was observed during the US smallpox vaccination (DryVax) campaign initiated in 2002. A highly-attenuated vaccinia strain, modified vaccinia Ankara (MVA) has been evaluated in clinical trials as a safer alternative to DryVax and as a vector for recombinant vaccines. Due to the lack of prospectively collected cardiac safety data, the US Food and Drug Administration required cardiac screening and surveillance in all clinical trials of MVA since 2004. Here, we report cardiac safety surveillance from 6 phase I trials of MVA vaccines. Methods Four clinical research organizations contributed cardiac safety data using common surveillance methods in trials administering MVA or recombinant MVA vaccines to healthy participants. ‘Routine cardiac investigations’ (ECGs and cardiac enzymes obtained 2 weeks after injections of MVA or MVA-HIV recombinants, or placebo-controls), and ‘Symptom-driven cardiac investigations’ are reported. The outcome measure is the number of participants who met the CDC-case definition for vaccinia-related myo/pericarditis or who experienced cardiac adverse events from an MVA vaccine. Results Four hundred twenty-five study participants had post-vaccination safety data analyzed, 382 received at least one MVA-containing vaccine and 43 received placebo; 717 routine ECGs and 930 cardiac troponin assays were performed. Forty-five MVA recipients (12%) had additional cardiac testing performed; 22 for cardiac symptoms, 19 for ECG/laboratory changes, and 4 for cardiac symptoms with an ECG/laboratory change. No participant had evidence of symptomatic or asymptomatic myo/pericarditis meeting the CDC-case definition and judged to be related to an MVA vaccine. Conclusions Prospective surveillance of MVA recipients for myo/pericarditis did not detect cardiac adverse reactions in 382 study participants. Trial Registration ClinicalTrials.gov NCT00082446 NCT003766090 NCT00252148 NCT00083603 NCT00301184

  4. The Age and Geodynamic Evolution of the Metamorphic sole rocks from Izmir-Ankara-Erzıncan suture zone (Northern-Turkey)

    NASA Astrophysics Data System (ADS)

    Melih Çörtük, Rahmi; Faruk Çelik, Ömer; Özkan, Mutlu; Sherlock, Sarah C.; Marzoli, Andrea; Altıntaş, İsmail Emir; Topuz, Gültekin

    2016-04-01

    The İzmir-Ankara-Erzincan suture zone in northern Turkey is one of the major tectonic zones separating the Pontides to the North from the Anatolide-Tauride block and Kı rşehir Massif to the South. The accretionary complex of the İzmir-Ankara-Erzincan suture zone, near Artova, is composed mainly of peridotites with varying degree serpentinization, metamorphic rocks, basalt, sandstones, pelagic and neritic limestones. The metamorphic rocks are represented by amphibolite, garnet micaschit, calc-schist and marble. The metamorphic rocks were interpreted as the metamorphic sole rocks. Because; (i) They are tectonically located beneath the serpentinized peridotites. (ii) Foliation planes of both the amphibolites and mantle tectonites are parallel to each other. (iii) The metamorphic rocks are crosscut by non-metamorphic dolerite dikes which exhibite Nb and Ta depletion relative to Th enrichment on the N-MORB normalized multi-element spider diagram. The dolerite dikes display flat REE patterns (LaN/YbN=0.85-1.24). These geochemical signatures of the dolerite dikes are indicative of subduction component during their occurrences. Geochemical observations of the amphibolites suggest E-MORB- and OIB-like signatures (LaN/SmN= 1.39-3.14) and their protoliths are represented by basalt and alkali basaltic rocks. Amphiboles from the amphibolites are represented by calcic amphiboles (magnesio-hornblende, tchermakite and tremolite) and they yielded 40Ar-39Ar ages between 157.8 ± 3.6 Ma and 139 ± 11 Ma. These cooling ages were interpreted to be the intra-oceanic subduction/thrusting time of the İzmir-Ankara-Erzincan oceanic domain. This study was funded by TÜBİTAK (Project no: 112Y123).

  5. Afforestation areas defined by GIS in Gölbaşi specially protected area Ankara/Turkey.

    PubMed

    Dilek, E Figen; Sahin, Sükran; Yilmazer, Ilyas

    2008-09-01

    This paper concentrates on determining the areas for afforestation and the development of conservation strategies and actions in the case where there is high demand for the conservation of a particular land area. The analysis of hydrological landscape structure and of erodibility was prerequisite in the methodological design considering the site-specific natural landscape characteristics of the study area. The Gölbaşi Specially Protected Area (SPA) being the case area has many local environmental disturbances, especially with respect to its hydrological system, and the area is beset by increasing demands for its use by the burgeoning human population. It is obviously clear that the present intensive demand for recreational use will be forecasted further increase in the future. The count of rural residences is estimated to increase by 50% over the next decade. This intensive demand shall further strain the carrying capacity of the ecological milieu, which has already suffered to a significant degree because of the present urban and rural activities. The Gölbaşi district is located only 20 km from the city center of Ankara, and its surroundings were legally designated to be a Specially Protected Area primarily for the existence of lacustral and fluvial systems where two interconnected lakes exist: Mogan and Eğmir Lakes. Essentially, the continuity of the lacustral and fluvial system of Lakes Mogan and Eğmir depends on the preservation and improvement of the water sources. However, interconnected surface water bodies of these lakes are actually quite contaminated, and a decline in the water flow from Mogan to Eğmir has been observed. For the elaboration of the present method, required conventional maps (at 1/25,000 scale) of topography (for slope analysis) and geology (for erodibility and permeability analysis) were transferred to computer media using AutoCAD R.14 software. The rectification of the transferred data was done using ERDAS Imagine 8.3. All data

  6. Vectors Based on Modified Vaccinia Ankara Expressing Influenza H5N1 Hemagglutinin Induce Substantial Cross-Clade Protective Immunity

    PubMed Central

    Hessel, Annett; Schwendinger, Michael; Holzer, Georg W.; Orlinger, Klaus K.; Coulibaly, Sogue; Savidis-Dacho, Helga; Zips, Marie-Luise; Crowe, Brian A.; Kreil, Thomas R.; Ehrlich, Hartmut J.; Barrett, P. Noel; Falkner, Falko G.

    2011-01-01

    Background New highly pathogenic H5N1 influenza viruses are continuing to evolve with a potential threat for an influenza pandemic. So far, the H5N1 influenza viruses have not widely circulated in humans and therefore constitute a high risk for the non immune population. The aim of this study was to evaluate the cross-protective potential of the hemagglutinins of five H5N1 strains of divergent clades using a live attenuated modified vaccinia Ankara (MVA) vector vaccine. Methodology/Principal Findings The replication-deficient MVA virus was used to express influenza hemagglutinin (HA) proteins. Specifically, recombinant MVA viruses expressing the HA genes of the clade 1 virus A/Vietnam/1203/2004 (VN/1203), the clade 2.1.3 virus A/Indonesia/5/2005 (IN5/05), the clade 2.2 viruses A/turkey/Turkey/1/2005 (TT01/05) and A/chicken/Egypt/3/2006 (CE/06), and the clade 2.3.4 virus A/Anhui/1/2005 (AH1/05) were constructed. These experimental live vaccines were assessed in a lethal mouse model. Mice vaccinated with the VN/1203 hemagglutinin-expressing MVA induced excellent protection against all the above mentioned clades. Also mice vaccinated with the IN5/05 HA expressing MVA induced substantial protection against homologous and heterologous AH1/05 challenge. After vaccination with the CE/06 HA expressing MVA, mice were fully protected against clade 2.2 challenge and partially protected against challenge of other clades. Mice vaccinated with AH1/05 HA expressing MVA vectors were only partially protected against homologous and heterologous challenge. The live vaccines induced substantial amounts of neutralizing antibodies, mainly directed against the homologous challenge virus, and high levels of HA-specific IFN-γ secreting CD4 and CD8 T-cells against epitopes conserved among the H5 clades and subclades. Conclusions/Significance The highest level of cross-protection was induced by the HA derived from the VN/1203 strain, suggesting that pandemic H5 vaccines utilizing MVA vector

  7. Protective effects of a Modified Vaccinia Ankara-based vaccine candidate against Crimean-Congo Haemorrhagic Fever virus require both cellular and humoral responses

    PubMed Central

    Dowall, Stuart D.; Graham, Victoria A.; Rayner, Emma; Hunter, Laura; Watson, Robert; Taylor, Irene; Rule, Antony; Carroll, Miles W.; Hewson, Roger

    2016-01-01

    Crimean-Congo Haemorrhagic Fever (CCHF) is a severe tick-borne disease, endemic in many countries in Africa, the Middle East, Eastern Europe and Asia. There is no approved vaccine currently available against CCHF. The most promising candidate, which has previously been shown to confer protection in the small animal model, is a modified Vaccinia Ankara virus vector expressing the CCHF viral glycoprotein (MVA-GP). It has been shown that MVA-GP induces both humoral and cellular immunogenicity. In the present study, sera and T-lymphocytes were passively and adoptively transferred into recipient mice prior to challenge with CCHF virus. Results demonstrated that mediators from both arms of the immune system were required to demonstrate protective effects against lethal challenge. PMID:27272940

  8. Improvement of BCG protective efficacy with a novel chimpanzee adenovirus and a modified vaccinia Ankara virus both expressing Ag85A

    PubMed Central

    Stylianou, E.; Griffiths, K.L.; Poyntz, H.C.; Harrington-Kandt, R.; Dicks, M.D.; Stockdale, L.; Betts, G.; McShane, H.

    2015-01-01

    A replication-deficient chimpanzee adenovirus expressing Ag85A (ChAdOx1.85A) was assessed, both alone and in combination with modified vaccinia Ankara also expressing Ag85A (MVA85A), for its immunogenicity and protective efficacy against a Mycobacterium tuberculosis (M.tb) challenge in mice. Naïve and BCG-primed mice were vaccinated or boosted with ChAdOx1.85A and MVA85A in different combinations. Although intranasally administered ChAdOx1.85A induced strong immune responses in the lungs, it failed to consistently protect against aerosol M.tb challenge. In contrast, ChAdOx1.85A followed by MVA85A administered either mucosally or systemically, induced strong immune responses and was able to improve the protective efficacy of BCG. This vaccination regime has consistently shown superior protection over BCG alone and should be evaluated further. PMID:26478198

  9. A Modified Vaccinia Ankara Virus (MVA) Vaccine Expressing African Horse Sickness Virus (AHSV) VP2 Protects Against AHSV Challenge in an IFNAR −/− Mouse Model

    PubMed Central

    Castillo-Olivares, Javier; Calvo-Pinilla, Eva; Casanova, Isabel; Bachanek-Bankowska, Katarzyna; Chiam, Rachael; Maan, Sushila; Nieto, Jose Maria; Ortego, Javier; Mertens, Peter Paul Clement

    2011-01-01

    African horse sickness (AHS) is a lethal viral disease of equids, which is transmitted by Culicoides midges that become infected after biting a viraemic host. The use of live attenuated vaccines has been vital for the control of this disease in endemic regions. However, there are safety concerns over their use in non-endemic countries. Research efforts over the last two decades have therefore focused on developing alternative vaccines based on recombinant baculovirus or live viral vectors expressing structural components of the AHS virion. However, ethical and financial considerations, relating to the use of infected horses in high biosecurity installations, have made progress very slow. We have therefore assessed the potential of an experimental mouse-model for AHSV infection for vaccine and immunology research. We initially characterised AHSV infection in this model, then tested the protective efficacy of a recombinant vaccine based on modified vaccinia Ankara expressing AHS-4 VP2 (MVA-VP2). PMID:21298069

  10. Safety, Immunogenicity and Efficacy of Modified Vaccinia Ankara (MVA) Against Dryvax® Challenge in Vaccinia-Naïve and Vaccinia-Immune Individuals

    PubMed Central

    Parrino, Janie; McCurdy, Lewis H.; Larkin, Brenda D.; Gordon, Ingelise J.; Rucker, Steven E.; Enama, Mary E.; Koup, Richard A.; Roederer, Mario; Bailer, Robert T.; Moodie, Zoe; Gu, Lin; Yan, Lihan; Graham, Barney S.

    2007-01-01

    Modified vaccinia Ankara (MVA) was evaluated as an alternative to Dryvax® in vaccinia-naïve and immune adult volunteers. Subjects received intramuscular MVA or placebo followed by Dryvax® challenge at 3 months. Two or more doses of MVA prior to Dryvax® reduced severity of lesion formation, decreased magnitude and duration of viral shedding, and augmented post-Dryvax® vaccinia-specific CD8+ T cell responses and extracellular enveloped virus protein-specific antibody responses. MVA vaccination is safe and immunogenic and improves the safety and immunogenicity of subsequent Dryvax® vaccination supporting the potential for using MVA as a vaccine in the general population to improve immunity to orthopoxviruses. PMID:17126963

  11. Modified vaccinia Ankara expressing HIVA antigen stimulates HIV-1-specific CD8 T cells in ELISpot assays of HIV-1 exposed infants☆

    PubMed Central

    Slyker, Jennifer A.; Lohman, Barbara L.; Mbori-Ngacha, Dorothy A.; Reilly, Marie; Wee, Edmund G.-T.; Dong, Tao; McMichael, Andrew J.; Rowland-Jones, Sarah L.; Hanke, Tomas; John-Stewart, Grace

    2012-01-01

    Recombinant modified vaccinia virus Ankara expressing HIV-1 antigens (MVA.HIVA) was used in ELISpot assays to monitor HIV-1-specific T cell responses in infants. Responses to MVA.HIVA and HIV-1 peptides were examined in 13 infected and 81 exposed uninfected infants in Nairobi, Kenya. Responses to MVA.HIVA (38%) and peptide stimulation (38%) were similar in frequency (p = 1.0) and magnitude (mean 176 versus 385 HIVSFU/106, p = 0.96) in HIV-1 infected infants. In exposed uninfected infants, MVA.HIVA detected more positive responses and higher magnitude responses as compared to peptide. MVA.HIVA ELISpot is a sensitive method for quantification of HIV-1-specific CD8+ T cell responses in HIV-1 exposed infants. These results demonstrate the relevance of HIV-1 clade A consensus-derived immunogen HIVA for the viruses currently circulating in Nairobi. PMID:16043269

  12. Fatal ethyl and methyl alcohol-related poisoning in Ankara: A retrospective analysis of 10,720 cases between 2001 and 2011.

    PubMed

    Celik, Safa; Karapirli, Mustafa; Kandemir, Eyup; Ucar, Fatma; Kantarcı, Muhammed Nabi; Gurler, Mukaddes; Akyol, Omer

    2013-04-01

    Methyl and ethyl alcohol poisoning are still responsible for high morbidity and mortality rates. The purpose of this retrospective study was to examine ethyl and methyl alcohol poisoning related deaths in Ankara and surrounding cities between 2001 and 2011 and compare them with previous studied conducted in Turkey and other countries. For this purpose, 10,720 medico-legal autopsy cases performed in Ankara Branch of the Council of Forensic Medicine were reviewed in terms of alcohol poisonings. The deaths due to methanol and ethanol poisoning were 74 (0.69% of all medico-legal autopsies performed) and the distribution among them was 35 (47.3%) for methanol poisoning and 39 (52.7%) for ethanol poisoning. Overwhelming majority of the cases were male (n = 67, 90.5%). The mean age of the victims was 44.9 ± 10.9 years and ranging from 21 to 92 years. The age group of 35-49 years was the mostly affected. Most of the cases were seen in 2004 (n = 12, 16.2%). The levels of postmortem blood alcohol levels were available for all cases and the mean alcohol levels were 322.8 ± 155.5 mg/dL ranging from 74 to 602 mg/dL for methanol and 396.8 ± 87.1 mg/dL and ranging from 136 to 608 mg/dL for ethanol. Early diagnosis is essential for successful treatment in methanol and ethanol poisoning. Besides increased awareness, more sensitive/specific diagnostic tools, and the prompt approach to the poisoned individual should be implemented in the hospitals. PMID:23472793

  13. Short communication: investigation of aflatoxin M1 levels in infant follow-on milks and infant formulas sold in the markets of Ankara, Turkey.

    PubMed

    Er, B; Demirhan, B; Yentür, G

    2014-01-01

    Aflatoxins are fungal toxins known to be carcinogenic and are classified as food contaminants. This study was performed to investigate aflatoxin (AF) M1 levels in baby foods sold in Ankara (Turkey) and to evaluate the obtained results according to the Turkish Food Codex (TFC). For this purpose, a total of 84 baby food samples (50 follow-on milks and 34 infant formulas) were obtained from different markets in Ankara and the presence of AFM1 in the samples was analyzed by ELISA. In 32 (38.1%) of 84 infant food samples, the presence of AFM1 was detected in concentrations ranging between 0.0055 and 0.0201 µg/kg. The mean level (± standard error) of AFM1 was found to be 0.0089 ± 0.0006 µg/kg in positive infant follow-on milks. Aflatoxin M1 was detected in only 1 infant formula sample (2.94%) at a concentration of 0.0061 µg/kg. The extrapolated levels of AFB1 contamination in feedstuffs were calculated based on levels of AFM1 in baby food samples. The data estimating AFB1 contamination in dairy cattle feedstuff indicate that contamination may range from 0.3410 to 1.2580 µg/kg, with the mean level (± standard error) being 0.5499 ± 0.0385 µg/kg, which is lower than the level set by the TFC and European Union regulations (5 µg/kg). According to the obtained results, the levels of AFM1 in analyzed samples were within the allowed limit (0.025 µg/kg) set in the TFC. Low levels of AFM1 in infant follow-on milks and infant formula samples obtained during the study do not pose a health risk to infants. PMID:24731644

  14. Coastline change assessment on water reservoirs located in the Konya Basin Area, Turkey, using multitemporal landsat imagery.

    PubMed

    Durduran, S Savas

    2010-05-01

    This paper focuses mainly on the coastline change assessment on water reservoirs located in the Konya Basin Area, Turkey. The Konya Closed Basin exists at the Central Anatolia Region and covers a region of 50,000 km(2) area corresponding to the 7% cumulative area of Turkey in which three million people live, 45% in rural areas and 55% in urban areas. The basin is surrounded with the city centers of Konya, Aksaray, Karaman, Isparta, Niğde, Ankara, Nevşehir, and Antalya cities. In this study, these changes were examined using Landsat TM and ETM+ 1987-2006 and 1990-2000. In the image processing step, image and vectorization of the satellite images were carried out to monitor coastline changes over the lakes located in the Konya Closed Basin Area. At the end of the study, significant coastline movements were detected for a 19-year period due to drought effects, agricultural watering, and planning mistakes experienced in the basin. PMID:19399635

  15. Safety and Immunogenicity of Modified Vaccinia Ankara-Bavarian Nordic Smallpox Vaccine in Vaccinia-Naive and Experienced Human Immunodeficiency Virus-Infected Individuals: An Open-Label, Controlled Clinical Phase II Trial

    PubMed Central

    Overton, Edgar Turner; Stapleton, Jack; Frank, Ian; Hassler, Shawn; Goepfert, Paul A.; Barker, David; Wagner, Eva; von Krempelhuber, Alfred; Virgin, Garth; Meyer, Thomas Peter; Müller, Jutta; Bädeker, Nicole; Grünert, Robert; Young, Philip; Rösch, Siegfried; Maclennan, Jane; Arndtz-Wiedemann, Nathaly; Chaplin, Paul

    2015-01-01

    Background. First- and second-generation smallpox vaccines are contraindicated in individuals infected with human immunodeficiency virus (HIV). A new smallpox vaccine is needed to protect this population in the context of biodefense preparedness. The focus of this study was to compare the safety and immunogenicity of a replication-deficient, highly attenuated smallpox vaccine modified vaccinia Ankara (MVA) in HIV-infected and healthy subjects. Methods. An open-label, controlled Phase II trial was conducted at 36 centers in the United States and Puerto Rico for HIV-infected and healthy subjects. Subjects received 2 doses of MVA administered 4 weeks apart. Safety was evaluated by assessment of adverse events, focused physical exams, electrocardiogram recordings, and safety laboratories. Immune responses were assessed using enzyme-linked immunosorbent assay (ELISA) and a plaque reduction neutralization test (PRNT). Results. Five hundred seventy-nine subjects were vaccinated at least once and had data available for analysis. Rates of ELISA seropositivity were comparably high in vaccinia-naive healthy and HIV-infected subjects, whereas PRNT seropositivity rates were higher in healthy compared with HIV-infected subjects. Modified vaccinia Ankara was safe and well tolerated with no adverse impact on viral load or CD4 counts. There were no cases of myo-/pericarditis reported. Conclusions. Modified vaccinia Ankara was safe and immunogenic in subjects infected with HIV and represents a promising smallpox vaccine candidate for use in immunocompromised populations. PMID:26380340

  16. Reserves in western basins

    SciTech Connect

    Caldwell, R.H.; Cotton, B.W.

    1992-06-01

    This project requires generation of producible tight gas sand reserve estimates for three western basins. The requirement is to perform such reserve estimates using industry accepted practices so that results will have high credibility and acceptance by the oil and gas industry. The ultimate goal of the project is to encourage development of the tight gas formation by industry through reduction of the technical and economic risks of locating, drilling and completing commercial gas wells. The three geological basins selected for study are the Greater Green River Basin, Uinta Basin and Piceance Basin, located in the Colorado, Utah and Wyoming Rocky Mountain region.

  17. Reserves in western basins

    SciTech Connect

    Caldwell, R.H.; Cotton, B.W.

    1992-01-01

    This project requires generation of producible tight gas sand reserve estimates for three western basins. The requirement is to perform such reserve estimates using industry accepted practices so that results will have high credibility and acceptance by the oil and gas industry. The ultimate goal of the project is to encourage development of the tight gas formation by industry through reduction of the technical and economic risks of locating, drilling and completing commercial gas wells. The three geological basins selected for study are the Greater Green River Basin, Uinta Basin and Piceance Basin, located in the Colorado, Utah and Wyoming Rocky Mountain region.

  18. The fatal poisoning pattern of Ankara (Turkey) and nearby cities from 2007 to June 2011: a retrospective study in forensic autopsies.

    PubMed

    Karaarslan, Bekir; Karapirli, Mustafa; Kandemir, Eyup; Kucuker, Hudaverdi; Gurler, Mukaddes; Ince, Cengiz Haluk; Akyol, Omer

    2013-11-01

    We aimed to obtain an outline of the nature and number of fatal poisonings which still appear to affect widely the population in Turkey. A total of 5921 forensic autopsies were performed between 2007 and 2011 in Ankara and nearby cities and 366 of them were fatal poisonings (219 male, 147 female). Most of the cases were between 41 and 60 years old (n = 84). Most of the fatalities were reported during winter months (48.1%). Carbon monoxide exposure was the most common reason (66.7%) within all the causes followed by medicine and narcotics (13.9%). Postmortem blood alcohol concentrations in ethyl and methyl alcohol poisonings were 385.1 ± 61.9 and 206.8 ± 138.9 mg/dL, respectively. The most common location of deaths was home (71.3%). Fatal poisonings have been a growing global problem because of some shortcomings about the socioeconomic conditions and increasing illicit drug abuse. The level of education, socioeconomic conditions, and legal approaches are very important for the prevention fatal poisonings. PMID:23865682

  19. Different Patterns of Expansion, Contraction and Memory Differentiation of HIV-1 Gag-Specific CD8 T Cells Elicited by Adenovirus Type 5 and Modified Vaccinia Ankara Vaccines

    PubMed Central

    Pillai, Vinod Kumar Bhaskara; Kannanganat, Sunil; Penaloza-MacMaster, Pablo; Chennareddi, Lakshmi; Robinson, Harriet L.; Blackwell, Jerry; Amara, Rama Rao

    2011-01-01

    The magnitude and functional quality of antiviral CD8 T cell responses are critical for the efficacy of T cell based vaccines. Here, we investigate the influence of two popular viral vectors, adenovirus type 5 (Ad5) and modified vaccinia Ankara (MVA), on expansion, contraction and memory differentiation of HIV-1 Gag insert-specific CD8 T cell responses following immunization and show different patterns for the two recombinant viral vectors. The Ad5 vector primed 6-fold higher levels of insert-specific CD8 effector T cells than the MVA vector. The Ad5-primed effector cells also underwent less contraction (< 2-fold) than the MVA-primed cells (>5-fold). The Ad5-primed memory cells were predominantly CD62L negative (effector memory) whereas the MVA-primed memory cells were predominantly CD62L positive (central memory). Consistent with their memory phenotype, MVA-primed CD8 T cells underwent higher fold expansion than Ad5-primed CD8 T cells following a homologous or heterologous boost. Impressively, the Ad5 boost changed the quality of MVA-primed memory response such that they undergo less contraction with effector memory phenotype. However, the MVA boost did not influence the contraction and memory phenotype of Ad5-primed response. In conclusion, our results demonstrate that vaccine vector strongly influences the expansion, contraction and the functional quality of insert-specific CD8 T cell responses and have implications for vaccine development against infectious diseases. PMID:21651938

  20. Enhanced immunogenicity of CD4(+) t-cell responses and protective efficacy of a DNA-modified vaccinia virus Ankara prime-boost vaccination regimen for murine tuberculosis.

    PubMed

    McShane, H; Brookes, R; Gilbert, S C; Hill, A V

    2001-02-01

    DNA vaccines whose DNA encodes a variety of antigens from Mycobacterium tuberculosis have been evaluated for immunogenicity and protective efficacy. CD8(+) T-cell responses and protection achieved in other infectious disease models have been optimized by using a DNA immunization to prime the immune system and a recombinant virus encoding the same antigen(s) to boost the response. A DNA vaccine (D) and recombinant modified vaccinia virus Ankara (M) in which the DNA encodes early secreted antigenic target 6 and mycobacterial protein tuberculosis 63 synthesized, and each was found to generate specific gamma interferon (IFN-gamma)-secreting CD4(+) T cells. Enhanced CD4(+) IFN-gamma T-cell responses were produced by both D-M and M-D immunization regimens. Significantly higher levels of IFN-gamma were seen with a D-D-D-M immunization regimen. The most immunogenic regimens were assessed in a challenge study and found to produce protection equivalent to that produced by Mycobacterium bovis BCG. Thus, heterologous prime-boost regimens boost CD4(+) as well as CD8(+) T-cell responses, and the use of heterologous constructs encoding the same antigen(s) may improve the immunogenicity and protective efficacy of DNA vaccines against tuberculosis and other diseases. PMID:11159955

  1. Prime-boost vaccination with chimpanzee adenovirus and modified vaccinia Ankara encoding TRAP provides partial protection against Plasmodium falciparum infection in Kenyan adults.

    PubMed

    Ogwang, Caroline; Kimani, Domtila; Edwards, Nick J; Roberts, Rachel; Mwacharo, Jedidah; Bowyer, Georgina; Bliss, Carly; Hodgson, Susanne H; Njuguna, Patricia; Viebig, Nicola K; Nicosia, Alfredo; Gitau, Evelyn; Douglas, Sandy; Illingworth, Joe; Marsh, Kevin; Lawrie, Alison; Imoukhuede, Egeruan B; Ewer, Katie; Urban, Britta C; S Hill, Adrian V; Bejon, Philip

    2015-05-01

    Protective immunity to the liver stage of the malaria parasite can be conferred by vaccine-induced T cells, but no subunit vaccination approach based on cellular immunity has shown efficacy in field studies. We randomly allocated 121 healthy adult male volunteers in Kilifi, Kenya, to vaccination with the recombinant viral vectors chimpanzee adenovirus 63 (ChAd63) and modified vaccinia Ankara (MVA), both encoding the malaria peptide sequence ME-TRAP (the multiple epitope string and thrombospondin-related adhesion protein), or to vaccination with rabies vaccine as a control. We gave antimalarials to clear parasitemia and conducted PCR (polymerase chain reaction) analysis on blood samples three times a week to identify infection with the malaria parasite Plasmodium falciparum. On Cox regression, vaccination reduced the risk of infection by 67% [95% confidence interval (CI), 33 to 83%; P = 0.002] during 8 weeks of monitoring. T cell responses to TRAP peptides 21 to 30 were significantly associated with protection (hazard ratio, 0.24; 95% CI, 0.08 to 0.75; P = 0.016). PMID:25947165

  2. Vaccination of horses with a recombinant modified vaccinia Ankara virus (MVA) expressing African horse sickness (AHS) virus major capsid protein VP2 provides complete clinical protection against challenge

    PubMed Central

    Alberca, Berta; Bachanek-Bankowska, Katarzyna; Cabana, Marta; Calvo-Pinilla, Eva; Viaplana, Elisenda; Frost, Lorraine; Gubbins, Simon; Urniza, Alicia; Mertens, Peter; Castillo-Olivares, Javier

    2014-01-01

    African horse sickness virus (AHSV) is an arthropod-borne pathogen that infects all species of equidae and causes high mortality in horses. Previously, a recombinant modified vaccinia Ankara (MVA) virus expressing the protein VP2 of AHSV serotype 4 was shown to induce virus neutralising antibodies in horses and protected interferon alpha receptor gene knock-out mice (IFNAR −/−) against virulent AHSV challenge. This study builds on the previous work, examining the protective efficacy of MVA-VP2 vaccination in the natural host of AHSV infection. A study group of 4 horses was vaccinated twice with a recombinant MVA virus expressing the major capsid protein (VP2) of AHSV serotype 9. Vaccinated animals and a control group of unvaccinated horses were then challenged with a virulent strain of AHSV-9. The vaccinated animals were completely protected against clinical disease and also against viraemia as measured by standard end-point dilution assays. In contrast, all control horses presented viraemia after challenge and succumbed to the infection. These results demonstrate the potential of recombinant MVA viruses expressing the outer capsid VP2 of AHSV as a protective vaccine against AHSV infection in the field. PMID:24837765

  3. Vaccination of patients with metastatic renal cancer with modified vaccinia Ankara encoding the tumor antigen 5T4 (TroVax) given alongside interferon-alpha.

    PubMed

    Hawkins, Robert E; Macdermott, Catriona; Shablak, Alaaeldin; Hamer, Caroline; Thistlethwaite, Fiona; Drury, Noel L; Chikoti, Priscilla; Shingler, William; Naylor, Stuart; Harrop, Richard

    2009-05-01

    Approximately 90% of renal cell tumors overexpress the tumor antigen 5T4. The attenuated strain of vaccinia virus, modified vaccinia Ankara, has been engineered to express 5T4 (TroVax). We conducted an open-label phase 1/2 trial in which TroVax was administered alongside interferon-alpha (IFNalpha) to 11 patients with metastatic renal cell carcinoma. Antigen-specific cellular and humoral responses were monitored throughout the study, and clinical responses were assessed by measuring the changes in tumor burden by computed tomography scan (Response Evaluation Criteria In Solid Tumors). The primary objective was to assess the safety, immunogenicity, and efficacy of TroVax when given alongside IFNalpha. Treatment with TroVax plus IFNalpha was well tolerated with no serious adverse events attributed to TroVax. All 11 patients mounted 5T4-specific antibody responses and 5 (45%) mounted cellular responses. No objective tumor responses were seen, but the overall median time to progression (TTP) of 9 months (range: 2.1 to 26+ mo) was longer than expected for IFNalpha alone. For the 10 clear cell patients the TTP ranged from 3.9 to 26+ months, with a median TTP of 10.4 months. The high frequency of 5T4-specific immune responses and prolonged median TTP for clear cell patients compared with that expected for IFNalpha alone is encouraging and warrants further investigation. PMID:19342962

  4. Divergent/passive margin basins

    SciTech Connect

    Edwards, J.D. ); Santogrossi, P.A. )

    1989-01-01

    This book discusses the detailed geology of the four divergent margin basins and establishes a set of analog scenarios which can be used for future petroleum exploration. The divergent margin basins are the Campos basin of Brazil, the Gabon basin, the Niger delta, and the basins of the northwest shelf of Australia. These four petroleum basins present a wide range of stratigraphic sequences and structural styles that represent the diverse evolution of this large and important class of world petroleum basins.

  5. Microarray Analysis Reveals Characteristic Changes of Host Cell Gene Expression in Response to Attenuated Modified Vaccinia Virus Ankara Infection of Human HeLa Cells

    PubMed Central

    Guerra, Susana; López-Fernández, Luis A.; Conde, Raquel; Pascual-Montano, Alberto; Harshman, Keith; Esteban, Mariano

    2004-01-01

    The potential use of the modified vaccinia virus Ankara (MVA) strain as a live recombinant vector to deliver antigens and elicit protective immune responses against infectious diseases demands a comprehensive understanding of the effect of MVA infection on human host gene expression. We used microarrays containing more than 15,000 human cDNAs to identify gene expression changes in human HeLa cell cultures at 2, 6, and 16 h postinfection. Clustering of the 410 differentially regulated genes identified 11 discrete gene clusters with altered expression patterns after MVA infection. Clusters 1 and 2 (accounting for 16.59% [68 of 410] of the genes) contained 68 transcripts showing a robust induction pattern that was maintained during the course of infection. Changes in cellular gene transcription detected by microarrays after MVA infection were confirmed for selected genes by Northern blot analysis and by real-time reverse transcription-PCR. Upregulated transcripts in clusters 1 and 2 included 20 genes implicated in immune responses, including interleukin 1A (IL-1A), IL-6, IL-7, IL-8, and IL-15 genes. MVA infection also stimulated the expression of NF-κB and components of the NF-κB signal transduction pathway, including p50 and TRAF-interacting protein. A marked increase in the expression of histone family members was also induced during MVA infection. Expression of the Wiskott-Aldrich syndrome family members WAS, WASF1, and the small GTP-binding protein RAC-1, which are involved in actin cytoskeleton reorganization, was enhanced after MVA infection. This study demonstrates that MVA infection triggered the induction of groups of genes, some of which may be involved in host resistance and immune modulation during virus infection. PMID:15140980

  6. The Orthopoxvirus 68-Kilodalton Ankyrin-Like Protein Is Essential for DNA Replication and Complete Gene Expression of Modified Vaccinia Virus Ankara in Nonpermissive Human and Murine Cells▿

    PubMed Central

    Sperling, Karin M.; Schwantes, Astrid; Staib, Caroline; Schnierle, Barbara S.; Sutter, Gerd

    2009-01-01

    Modified vaccinia virus Ankara (MVA) is a highly attenuated and replication-deficient vaccinia virus (VACV) that is being evaluated as replacement smallpox vaccine and candidate viral vector. MVA lacks many genes associated with virulence and/or regulation of virus tropism. The 68-kDa ankyrin-like protein (68k-ank) is the only ankyrin repeat-containing protein that is encoded by the MVA genome and is highly conserved throughout the Orthopoxvirus genus. We showed previously that 68k-ank is composed of ankyrin repeats and an F-box-like domain and forms an SCF ubiquitin ligase complex together with the cellular proteins Skp1a and Cullin-1. We now report that 68k-ank (MVA open reading frame 186R) is an essential factor for completion of the MVA intracellular life cycle in nonpermissive human and murine cells. Infection of mouse NIH 3T3 and human HaCaT cells with MVA with a deletion of the 68k-ank gene (MVA-Δ68k-ank) was characterized by an extensive reduction of viral intermediate RNA and protein, as well as late transcripts and drastically impaired late protein synthesis. Furthermore, infections with MVA-Δ68k-ank failed to induce the host protein shutoff that is characteristic of VACV infections. Although we demonstrated that proteasome function in general is essential for the completion of the MVA molecular life cycle, we found that a mutant 68k-ank protein with a deletion of the F-box-like domain was able to fully complement the deficiency of MVA-Δ68k-ank to express all classes of viral genes. Thus, our data demonstrate that the 68k-ank protein contains another critical domain that may function independently of SCF ubiquitin ligase complex formation, suggesting multiple activities of this interesting regulatory protein. PMID:19357172

  7. Environmental Harmony and Evaluation of Advertisement Billboards with Digital Photogrammetry Technique and GIS Capabilities: A Case Study in the City of Ankara

    PubMed Central

    Aydın, Cevdet C.; Nişancı, Recep

    2008-01-01

    Geographical Information Systems (GIS) have been gaining a growing interest in Turkey. Many local governments and public agencies have been struggling to set up such systems to serve the needs and meet public requirements. Urban life shelters the advertisement reality which is presented at various places, on vehicles, shops etc. in daily life. It can be said that advertisement is a part of daily life in urban area, especially in city centers. In addition, one of the main sources of revenue for municipalities comes from advertising and notices. The advertising sector provides a great level of income today. Therefore advertising is individually very important for local governments and urban management. Although it is valuable for local governments, it is also very important for urban management to place these advertisement signs and billboards in an orderly fashion which is pleasing to the eye. Another point related to this subject is the systematic control mechanism which is necessary for collecting taxes regularly and updating. In this paper, first practical meaning of notice and advertisement subject, problem definition and objectives are described and then legal support and daily practice are revised. Current practice and problems are mentioned. Possibilities of measuring and obtaining necessary information by using digital images and transferring them to spatial databases are studied. By this study, a modern approach was developed for urban management and municipalities by using information technology which is an alternative to current application. Criteria which provide environmental harmony such as urban beauty, colour, compatibility and safety were also evaluated. It was finally concluded that measuring commercial signs and keeping environmental harmony under control for urban beauty can be provided by Digital Photogrammetry (DP) technique and GIS capabilities which were studied with pilot applications in the city center of Ankara.

  8. Chemokine (C-C Motif) Receptor 1 Is Required for Efficient Recruitment of Neutrophils during Respiratory Infection with Modified Vaccinia Virus Ankara

    PubMed Central

    Price, Philip J. R.; Luckow, Bruno; Torres-Domínguez, Lino E.; Brandmüller, Christine; Zorn, Julia; Kirschning, Carsten J.; Sutter, Gerd

    2014-01-01

    ABSTRACT Modified vaccinia virus Ankara (MVA) serves as a versatile platform in vaccine development. This highly attenuated orthopoxvirus, which cannot replicate in mammalian cells, triggers strong innate immune responses, including cell migration. Previously, we have shown that induction of chemokine (C-C motif) ligand 2 (CCL2) by MVA is necessary for the recruitment of monocytes and T cells, but not neutrophils, to the lung. Here, we identified neutrophil-attracting chemokines produced by MVA-infected primary murine lung fibroblasts and murine bone marrow-derived macrophages. We demonstrate that MVA, but not vaccinia virus (VACV) strain WR, induces chemokine expression, which is independent of Toll-like receptor 2 (TLR2) signaling. Additionally, we show that both chemokine (C-C motif) receptor 1 (CCR1) and chemokine (C-X-C motif) receptor 2 (CXCR2) are involved in MVA-induced neutrophil chemotaxis in vitro. Finally, intranasal infection of Ccr1−/− mice with MVA, as well as application of the CCR1 antagonist J-113863, revealed a role for CCR1 in leukocyte recruitment, including neutrophils, into the lung. IMPORTANCE Rapid attraction of leukocytes to the site of inoculation is unique to MVA in comparison to other VACV strains. The findings here extend current knowledge about the regulation of MVA-induced leukocyte migration, particularly regarding neutrophils, which could potentially be exploited to improve other VACV strains currently in development as oncolytic viruses and viral vectors. Additionally, the data presented here indicate that the inflammatory response may vary depending on the cell type infected by MVA, highlighting the importance of the site of vaccine application. Moreover, the rapid recruitment of neutrophils and other leukocytes can directly contribute to the induction of adaptive immune responses elicited by MVA inoculation. Thus, a better understanding of leukocyte migration upon MVA infection is particularly relevant for further

  9. Vaccination of prostate cancer patients with modified vaccinia ankara delivering the tumor antigen 5T4 (TroVax): a phase 2 trial.

    PubMed

    Amato, Robert J; Drury, Noel; Naylor, Stuart; Jac, Jaroslaw; Saxena, Somya; Cao, Amy; Hernandez-McClain, Joan; Harrop, Richard

    2008-01-01

    The attenuated vaccinia virus, modified vaccinia Ankara, has been engineered to deliver the tumor antigen 5T4 (TroVax). TroVax has been evaluated in an open-label phase 2 trial in hormone refractory prostate cancer patients in which the vaccine was administered either alone or in combination with granulocyte macrophage-colony stimulating factor (GM-CSF). The comparative safety and immunologic and clinical efficacy of TroVax alone or in combination with GM-CSF was determined. Twenty-seven patients with metastatic hormone refractory prostate cancer were treated with TroVax alone (n=14) or TroVax+GM-CSF (n=13). 5T4-specific cellular and humoral responses were monitored throughout the study. Clinical responses were assessed by quantifying prostate-specific antigen concentrations and measuring changes in tumor burden by computer-assisted tomography scan. TroVax was well tolerated in all patients with no serious adverse events attributed to vaccination. Of 24 immunologically evaluable patients, all mounted 5T4-specific antibody responses. Periods of disease stabilization from 2 to >10 months were observed. Time to progression was significantly greater in patients who mounted 5T4-specific cellular responses compared with those who did not (5.6 vs. 2.3 mo, respectively). There were no objective clinical responses seen in this study. In this study, the combination of GM-CSF with TroVax showed similar clinical and immunologic responses to TroVax alone. The high frequency of 5T4-specific immune responses and relationship with enhanced time to progression is encouraging and warrants further investigation. PMID:18528296

  10. Direct comparison of antigen production and induction of apoptosis by canarypox virus- and modified vaccinia virus ankara-human immunodeficiency virus vaccine vectors.

    PubMed

    Zhang, Xiugen; Cassis-Ghavami, Farah; Eller, Mike; Currier, Jeff; Slike, Bonnie M; Chen, Xuemin; Tartaglia, James; Marovich, Mary; Spearman, Paul

    2007-07-01

    Recombinant poxvirus vectors are undergoing intensive evaluation as vaccine candidates for a variety of infectious pathogens. Avipoxviruses, such as canarypox virus, are replication deficient in mammalian cells by virtue of a poorly understood species-specific restriction. Highly attenuated vaccinia virus strains such as modified vaccinia virus Ankara (MVA) are similarly unable to complete replication in most mammalian cells but have an abortive-late phenotype, in that the block to replication occurs post-virus-specific DNA replication. In this study, an identical expression cassette for human immunodeficiency virus gag, pro, and env coding sequences was placed in canarypox virus and MVA vector backbones in order to directly compare vector-borne expression and to analyze differences in vector-host cell interactions. Antigen production by recombinant MVA was shown to be greater than that from recombinant canarypox virus in the mammalian cell lines and in the primary human cells tested. This observation was primarily due to a longer duration of antigen production in recombinant MVA-infected cells. Apoptosis induction was found to be more profound with the empty canarypox virus vector than with MVA. Remarkably, however, the inclusion of a gag/pro/env expression cassette altered the kinetics of apoptosis induction in recombinant MVA-infected cells to levels equal to those found in canarypox virus-infected cells. Antigen production by MVA was noted to be greater in human dendritic cells and resulted in enhanced T-cell stimulation in an in vitro antigen presentation assay. These results reveal differences in poxvirus vector-host cell interactions that should be relevant to their use as immunization vehicles. PMID:17409140

  11. Direct Comparison of Antigen Production and Induction of Apoptosis by Canarypox Virus- and Modified Vaccinia Virus Ankara-Human Immunodeficiency Virus Vaccine Vectors▿

    PubMed Central

    Zhang, Xiugen; Cassis-Ghavami, Farah; Eller, Mike; Currier, Jeff; Slike, Bonnie M.; Chen, Xuemin; Tartaglia, James; Marovich, Mary; Spearman, Paul

    2007-01-01

    Recombinant poxvirus vectors are undergoing intensive evaluation as vaccine candidates for a variety of infectious pathogens. Avipoxviruses, such as canarypox virus, are replication deficient in mammalian cells by virtue of a poorly understood species-specific restriction. Highly attenuated vaccinia virus strains such as modified vaccinia virus Ankara (MVA) are similarly unable to complete replication in most mammalian cells but have an abortive-late phenotype, in that the block to replication occurs post-virus-specific DNA replication. In this study, an identical expression cassette for human immunodeficiency virus gag, pro, and env coding sequences was placed in canarypox virus and MVA vector backbones in order to directly compare vector-borne expression and to analyze differences in vector-host cell interactions. Antigen production by recombinant MVA was shown to be greater than that from recombinant canarypox virus in the mammalian cell lines and in the primary human cells tested. This observation was primarily due to a longer duration of antigen production in recombinant MVA-infected cells. Apoptosis induction was found to be more profound with the empty canarypox virus vector than with MVA. Remarkably, however, the inclusion of a gag/pro/env expression cassette altered the kinetics of apoptosis induction in recombinant MVA-infected cells to levels equal to those found in canarypox virus-infected cells. Antigen production by MVA was noted to be greater in human dendritic cells and resulted in enhanced T-cell stimulation in an in vitro antigen presentation assay. These results reveal differences in poxvirus vector-host cell interactions that should be relevant to their use as immunization vehicles. PMID:17409140

  12. Specificity and 6-Month Durability of Immune Responses Induced by DNA and Recombinant Modified Vaccinia Ankara Vaccines Expressing HIV-1 Virus-Like Particles

    PubMed Central

    Goepfert, Paul A.; Elizaga, Marnie L.; Seaton, Kelly; Tomaras, Georgia D.; Montefiori, David C.; Sato, Alicia; Hural, John; DeRosa, Stephen C.; Kalams, Spyros A.; McElrath, M. Juliana; Keefer, Michael C.; Baden, Lindsey R.; Lama, Javier R.; Sanchez, Jorge; Mulligan, Mark J.; Buchbinder, Susan P.; Hammer, Scott M.; Koblin, Beryl A.; Pensiero, Michael; Butler, Chris; Moss, Bernard; Robinson, Harriet L.; Donastorg, Yeycy; Qin, Li; Lawrence, Dale; Cardinali, Massimo; Bae, Jin; Holt, Renée; Redinger, Huguette; Johannessen, Jan; Broder, Gail; Moody-White, Jerri; McKay, Butch; Calazans, Gabriela; Bentley, Carter; Kakinami, Lisa; Skibinski, Katie; Estep, Scharla; Tseng, Jenny; Swenson, Molly; Madenwald, Tamra; Overton, Edgar Turner; Edupuganti, Srilatha; Rouphael, Nadine; Whitaker, Jennifer; Hay, C Mhorag; Bunce, Catherine A; Gonzales, Pedro; Hurtado, Juan Carlos; Dolin, Raphael; Mayer, Ken; Walsh, Steven; Johnson, Jennifer

    2014-01-01

    Background. Clade B DNA and recombinant modified vaccinia Ankara (MVA) vaccines producing virus-like particles displaying trimeric membrane-bound envelope glycoprotein (Env) were tested in a phase 2a trial in human immunodeficiency virus (HIV)–uninfected adults for safety, immunogenicity, and 6-month durability of immune responses. Methods. A total of 299 individuals received 2 doses of JS7 DNA vaccine and 2 doses of MVA/HIV62B at 0, 2, 4, and 6 months, respectively (the DDMM regimen); 3 doses of MVA/HIV62B at 0, 2, and 6 months (the MMM regimen); or placebo injections. Results. At peak response, 93.2% of the DDMM group and 98.4% of the MMM group had binding antibodies for Env. These binding antibodies were more frequent and of higher magnitude for the transmembrane subunit (gp41) than the receptor-binding subunit (gp120) of Env. For both regimens, response rates were higher for CD4+ T cells (66.4% in the DDMM group and 43.1% in the MMM group) than for CD8+ T cells (21.8% in the DDMM group and 14.9% in the MMM group). Responding CD4+ and CD8+ T cells were biased toward Gag, and >70% produced 2 or 3 of the 4 cytokines evaluated (ie, interferon γ, interleukin 2, tumor necrosis factor α, and granzyme B). Six months after vaccination, the magnitudes of antibodies and T-cell responses had decreased by <3-fold. Conclusions. DDMM and MMM vaccinations with virus-like particle–expressing immunogens elicited durable antibody and T-cell responses. PMID:24403557

  13. Origin of cratonic basins

    NASA Astrophysics Data System (ADS)

    Dev. Klein, George; Hsui, Albert T.

    1987-12-01

    Tectonic subsidence curves show that the Illinois, Michigan, and Williston basins formed by initial fault-controlled mechanical subsidence during rifting and by subsequent thermal subsidence. Thermal subsidence began around 525 Ma in the Illinois Basin, 520 460 Ma in the Michigan Basin, and 530 500 Ma in the Williston Basin. In the Illinois Basin, a second subsidence episode (middle Mississippian through Early Permian) was caused by flexural foreland subsidence in response to the Alleghanian-Hercynian orogeny. Resurgent Permian rifting in the Illinois Basin is inferred because of intrusion of well-dated Permian alnoites; such intrusive rocks are normally associated with rifting processes. The process of formation of these cratonic basins remains controversial. Past workers have suggested mantle phase changes at the base of the crust, mechanical subsidence in response to isostatically uncompensated excess mass following igneous intrusions, intrusion of mantle plumes into the crust, or regional thermal metamorphic events as causes of basin initiation. Cratonic basins of North America, Europe, Africa, and South America share common ages of formation (around 550 to 500 Ma), histories of sediment accumulation, temporal volume changes of sediment fills, and common dates of interregional unconformities. Their common date of formation suggests initiation of cratonic basins in response to breakup of a late Precambrian super-continent. This supercontinent acted as a heat lens that caused partial melting of the lower crust and upper mantle followed by emplacement of anorogenic granites during extensional tectonics in response to supercontinent breakup. Intrusion of anorogenic granites and other partially melted intrusive rocks weakened continental lithosphere, thus providing a zone of localized regional stretching and permitting formation of cratonic basins almost simultaneously over sites of intrusion of these anorogenic granites and other partially melted intrusive rocks.

  14. The Oquirrh basin revisited

    SciTech Connect

    Erskine, M.C.

    1997-04-01

    The upper Paleozoic succession in the Oquirrh basin in unusually thick, up to 9300 m, and consists mainly of a Pennsylvanian-middle Permian miogeocline of northwestern Utah. Previous workers have suggested a tectonic origin for the Oquirrh basin that is incompatible with the basin location in both time and space. There is no evidence for Pennsylvanian and Lower Permian tectonism in the middle of the miogeocline. Thermal evidence from the Mississippian Mission Canyon shale does no support the implied deep burial of the crustal sag models of basin formation. Stratigraphic and facies evidence indicates a growth fault origin for the basin. Regional isopach maps and facies maps are powerful tools in interpreting depositional environments and in reconstructing fold-and-thrust belts. However, the location of measured sections relative to the location of the growth fault basin. The Charleston-Nebo thrust may have essentially reversed the movement on a growth fault. Thick Oquirrh basin sedimentary rocks may not be required to balance structural sections across this thrust fault. A thin-skinned, extensional growth fault origin for the Oquirrh basin implies that the Cordilleran miogeocline did not participate in the Pennsylvanian north-vergent uplifts of the Ancestral Rocky Mountains.

  15. K Basin safety analysis

    SciTech Connect

    Porten, D.R.; Crowe, R.D.

    1994-12-16

    The purpose of this accident safety analysis is to document in detail, analyses whose results were reported in summary form in the K Basins Safety Analysis Report WHC-SD-SNF-SAR-001. The safety analysis addressed the potential for release of radioactive and non-radioactive hazardous material located in the K Basins and their supporting facilities. The safety analysis covers the hazards associated with normal K Basin fuel storage and handling operations, fuel encapsulation, sludge encapsulation, and canister clean-up and disposal. After a review of the Criticality Safety Evaluation of the K Basin activities, the following postulated events were evaluated: Crane failure and casks dropped into loadout pit; Design basis earthquake; Hypothetical loss of basin water accident analysis; Combustion of uranium fuel following dryout; Crane failure and cask dropped onto floor of transfer area; Spent ion exchange shipment for burial; Hydrogen deflagration in ion exchange modules and filters; Release of Chlorine; Power availability and reliability; and Ashfall.

  16. Reserves in western basins

    SciTech Connect

    Caldwell, R.H.; Cotton, B.W.

    1995-04-01

    The objective of this project is to investigate the reserves potential of tight gas reservoirs in three Rocky Mountain basins: the Greater Green River (GGRB), Uinta and Piceance basins. The basins contain vast gas resources that have been estimated in the thousands of Tcf hosted in low permeability clastic reservoirs. This study documents the productive characteristics of these tight reservoirs, requantifies gas in place resources, and characterizes the reserves potential of each basin. The purpose of this work is to promote understanding of the resource and to encourage its exploitation by private industry. At this point in time, the GGRB work has been completed and a final report published. Work is well underway in the Uinta and Piceance basins which are being handled concurrently, with reports on these basins being scheduled for the middle of this year. Since the GGRB portion of the project has been completed, this presentation win focus upon that basin. A key conclusion of this study was the subdivision of the resource, based upon economic and technological considerations, into groupings that have distinct properties with regard to potential for future producibility, economics and risk profile.

  17. The use of certified seeds of improved wheat varieties in farms and the contributions of certified seed usage to enterprise economies: the case of Ankara province in Turkey.

    PubMed

    Tanrivermiş, Harun; Akdoğan, Ilyas

    2007-12-15

    In this research, the use of certificated seeds of improved wheat varieties in farms of Ankara, which have an important share in wheat production of Turkey and the contributions of the certified seeds usage to enterprise economy have been evaluated by using data collected from farms via a questionnaire. The low level of use of certificated wheat seed in farms is associated with many factors, such as price of the seed (cost), yield gains and suitability of the varieties for the farming aims of producers. Average productivity is 49.5% and average net profit is 39.7% higher in the production of wheat with certificated seeds of improved varieties in farms in comparison to farming with traditional varieties. Average productivity in wheat production with uncertified seeds of improved varieties is 24.9% and net profit per unit area is 24.3% higher than wheat production with traditional varieties. The net economic benefit of wheat production using certificated seeds of improved varieties and that of wheat farming with uncertified seeds has been estimated at $ 102.40 and $ 62.70 ha(-1), respectively. Some $ 6.4 benefit is generated in return for $ 1 of expense in wheat farming with certificated seeds of improved varieties instead of traditional varieties. In the absence of state subsidies for certificated seeds the use of uncertified seeds seems to be advantageous for producers. While the amount of subsidy per hectare will be a minimum of $ 101 for certificated seeds per hectare of planting area (as technological improvement), the support will be encouraging for usage of certified seeds. Many variables, such as farm size, use of certified seeds, topography of land, production system, education level and frequency of visiting the agriculture organizations of the producers influence the level of gross profit per unit area in wheat farming. Low level of use of certificated seed in farms decreases the economic benefit of new varieties which are developed as a result of long

  18. Descriptive Features of Mesothelioma Cases Diagnosed in a Special Hospital in Ankara and Assessment of Domestic Environmental Exposure to Asbestosis and Erionite: Preliminary Results

    NASA Astrophysics Data System (ADS)

    Demirkaya, E.; Özden, A.; Aydogdu, K.; Polat, A.; Findik, G.; Agackiran, Y.; Ozaydin, S.; Ozturk, M.; Acikel, C.

    2013-05-01

    Background: Unlike Western countries where asbestosis and erionite exposure is industrial, domestic exposure of these chriystals is common in central and eastern Turkey where they are used as a constrcution material for houses. This life-long exposure to these materials has been showed to be causing endemies of mesothelioma at younger ages in central Turkey. In this study it was aimed to assess the descriptive features of malignant mesothelioma cases and evaluate the domestic exposure of asbestosis and erionite. Method: Data were obtained through retrospective reviewing of the patient files of a pulmonary disease hospital in Ankara. Demographical features such as age, gender, the place of birth, migration and living, age of diagnosis and some clinical features were evaluated. Results: A total of 44 files of patients diagnosed with malignant mesothelioma were screened. The female to male ratio was 19/25. Of the patients 43 (97 %) were born in asbestosis-rich and only one (3 %)was born in erionite-rich region. All of the patients had resided in asbestosis-rich regions where they were born and the places where some of the patients moved were known to be rich for asbestosis as well. The age of diagnosis was between 32 and 78 years and the median age of diagnosis was 54,5 years. Family history of malignancy was negative in 39 patients (88.6%) and was positive in 5 patients (11.4%). History for smoking was 40.9%. The 81.1 % of the patients applied with the complaint of dispnea; 48.8 % with cough and 45.5 % with chest pain. Median time period between the date of disease onset and diagnosis was 91 days. The most rapid diagnosis was made as early as 28 days. Pleural fluid was seen in 95.5 % while pleural thickening was seen in 29,5 % of the patients. Respiratory funcitons were found to be deteriorated in 86.4 %. The histological types of epitheloid and mixt mesothelioma were seen with the percentages of 69 % and 31 % respectively. Conclusion: This was a descriptive study

  19. A Pandemic Influenza H1N1 Live Vaccine Based on Modified Vaccinia Ankara Is Highly Immunogenic and Protects Mice in Active and Passive Immunizations

    PubMed Central

    Hessel, Annett; Schwendinger, Michael; Fritz, Daniela; Coulibaly, Sogue; Holzer, Georg W.; Sabarth, Nicolas; Kistner, Otfried; Wodal, Walter; Kerschbaum, Astrid; Savidis-Dacho, Helga; Crowe, Brian A.; Kreil, Thomas R.; Barrett, P. Noel; Falkner, Falko G.

    2010-01-01

    Background The development of novel influenza vaccines inducing a broad immune response is an important objective. The aim of this study was to evaluate live vaccines which induce both strong humoral and cell-mediated immune responses against the novel human pandemic H1N1 influenza virus, and to show protection in a lethal animal challenge model. Methodology/Principal Findings For this purpose, the hemagglutinin (HA) and neuraminidase (NA) genes of the influenza A/California/07/2009 (H1N1) strain (CA/07) were inserted into the replication-deficient modified vaccinia Ankara (MVA) virus - a safe poxviral live vector – resulting in MVA-H1-Ca and MVA-N1-Ca vectors. These live vaccines, together with an inactivated whole virus vaccine, were assessed in a lung infection model using immune competent Balb/c mice, and in a lethal challenge model using severe combined immunodeficient (SCID) mice after passive serum transfer from immunized mice. Balb/c mice vaccinated with the MVA-H1-Ca virus or the inactivated vaccine were fully protected from lung infection after challenge with the influenza H1N1 wild-type strain, while the neuraminidase virus MVA-N1-Ca induced only partial protection. The live vaccines were already protective after a single dose and induced substantial amounts of neutralizing antibodies and of interferon-γ-secreting (IFN-γ) CD4- and CD8 T-cells in lungs and spleens. In the lungs, a rapid increase of HA-specific CD4- and CD8 T cells was observed in vaccinated mice shortly after challenge with influenza swine flu virus, which probably contributes to the strong inhibition of pulmonary viral replication observed. In addition, passive transfer of antisera raised in MVA-H1-Ca vaccinated immune-competent mice protected SCID mice from lethal challenge with the CA/07 wild-type virus. Conclusions/Significance The non-replicating MVA-based H1N1 live vaccines induce a broad protective immune response and are promising vaccine candidates for pandemic influenza

  20. Modified Vaccinia Virus Ankara-Infected Dendritic Cells Present CD4+ T-Cell Epitopes by Endogenous Major Histocompatibility Complex Class II Presentation Pathways

    PubMed Central

    Thiele, Frank; Tao, Sha; Zhang, Yi; Muschaweckh, Andreas; Zollmann, Tina; Protzer, Ulrike; Abele, Rubert

    2014-01-01

    ABSTRACT CD4+ T lymphocytes play a central role in the immune system and mediate their function after recognition of their respective antigens presented on major histocompatibility complex II (MHCII) molecules on antigen-presenting cells (APCs). Conventionally, phagocytosed antigens are loaded on MHCII for stimulation of CD4+ T cells. Certain epitopes, however, can be processed directly from intracellular antigens and are presented on MHCII (endogenous MHCII presentation). Here we characterized the MHCII antigen presentation pathways that are possibly involved in the immune response upon vaccination with modified vaccinia virus Ankara (MVA), a promising live viral vaccine vector. We established CD4+ T-cell lines specific for MVA-derived epitopes as tools for in vitro analysis of MHCII antigen processing and presentation in MVA-infected APCs. We provide evidence that infected APCs are able to directly transfer endogenous viral proteins into the MHCII pathway to efficiently activate CD4+ T cells. By using knockout mice and chemical inhibitory compounds, we further elucidated the molecular basis, showing that among the various subcellular pathways investigated, proteasomes and autophagy are key players in the endogenous MHCII presentation during MVA infection. Interestingly, although proteasomal processing plays an important role, neither TAP nor LAMP-2 was found to be involved in the peptide transport. Defining the molecular mechanism of MHCII presentation during MVA infection provides a basis for improving MVA-based vaccination strategies by aiming for enhanced CD4+ T-cell activation by directing antigens into the responsible pathways. IMPORTANCE This work contributes significantly to our understanding of the immunogenic properties of pathogens by deciphering antigen processing pathways contributing to efficient activation of antigen-specific CD4+ T cells. We identified autophagosome formation, proteasomal activity, and lysosomal integrity as being crucial for

  1. The highly attenuated vaccinia virus strain modified virus Ankara induces apoptosis in melanoma cells and allows bystander dendritic cells to generate a potent anti-tumoral immunity

    PubMed Central

    Greiner, S; Humrich, J Y; Thuman, P; Sauter, B; Schuler, G; Jenne, L

    2006-01-01

    Vaccinia virus (VV) has been tested as oncolytic virus against malignant melanoma in clinical trials for more than 40 years. Until now, mainly strains comparable to viral strains used for smallpox vaccination have been probed for anti-tumoral therapy. We have shown recently that the wild-type strain Western Reserve (WR) can interfere with crucial functions of monocyte-derived dendritic cells (DCs). Our aim was to examine whether viral immune evasion mechanisms might be responsible for the ineffectiveness of WR-based vaccination strategies and whether the highly attenuated strain modified virus Ankara (MVA) differs from WR with respect to its possible immunostimulatory capacity after intratumoral injection. Using in vitro experiments, we compared the effect of both strains on melanoma cells and on local bystander DCs. We found that both VV-strains infected melanoma cells efficiently and caused disintegration of the actin cytoskeleton, as shown by fluorescence microscopy. In addition, both VV-strains caused apoptotic cell death in melanoma cells after infection. In contrast to MVA, WR underwent a complete viral replication cycle in melanoma cells. Bystander DCs were consecutively infected by newly generated WR virions and lost their capacity to induce allogeneic T cell proliferation. DCs in contact with MVA-infected melanoma cells retained their capacity to induce T cell proliferation. Immature DCs were capable of phagocytosing MVA-infected melanoma cells. Priming of autologous CD8+ T cells by DCs that had phagocytosed MVA-infected, MelanA positive melanoma cells resulted in the induction of T cell clones specifically reactive against the model antigen MelanA as shown by enzyme-linked immunospot (ELISPOT) analysis. We conclude that the clinical trials with oncolytic wild-type VV failed probably because of suppression of bystander DCs and consecutive suppression of T cell-mediated anti-melanoma immunity. The attenuated VV-strain MVA facilitates the generation of

  2. Phase I Safety and Immunogenicity Evaluation of MVA-CMDR, a Multigenic, Recombinant Modified Vaccinia Ankara-HIV-1 Vaccine Candidate

    PubMed Central

    Currier, Jeffrey R.; Ngauy, Viseth; de Souza, Mark S.; Ratto-Kim, Silvia; Cox, Josephine H.; Polonis, Victoria R.; Earl, Patricia; Moss, Bernard; Peel, Sheila; Slike, Bonnie; Sriplienchan, Somchai; Thongcharoen, Prasert; Paris, Robert M.; Robb, Merlin L.; Kim, Jerome; Michael, Nelson L.; Marovich, Mary A.

    2010-01-01

    Background We conducted a Phase I randomized, dose-escalation, route-comparison trial of MVA-CMDR, a candidate HIV-1 vaccine based on a recombinant modified vaccinia Ankara viral vector expressing HIV-1 genes env/gag/pol. The HIV sequences were derived from circulating recombinant form CRF01_AE, which predominates in Thailand. The objective was to evaluate safety and immunogenicity of MVA-CMDR in human volunteers in the US and Thailand. Methodology/Principal Findings MVA-CMDR or placebo was administered intra-muscularly (IM; 107 or 108 pfu) or intradermally (ID; 106 or 107 pfu) at months 0, 1 and 3, to 48 healthy volunteers at low risk for HIV-1 infection. Twelve volunteers in each dosage group were randomized to receive MVA-CMDR or placebo (10∶2). Volunteers were actively monitored for local and systemic reactogenicity and adverse events post vaccination. Cellular immunogenicity was assessed by a validated IFNγ Elispot assay, an intracellular cytokine staining assay, lymphocyte proliferation and a 51Cr-release assay. Humoral immunogenicity was assessed by ADCC for gp120 and binding antibody ELISAs for gp120 and p24. MVA-CMDR was safe and well tolerated with no vaccine related serious adverse events. Cell-mediated immune responses were: (i) moderate in magnitude (median IFNγ Elispot of 78 SFC/106 PBMC at 108 pfu IM), but high in response rate (70% 51Cr-release positive; 90% Elispot positive; 100% ICS positive, at 108 pfu IM); (ii) predominantly HIV Env-specific CD4+ T cells, with a high proliferative capacity and durable for at least 6 months (100% LPA response rate by the IM route); (iv) dose- and route-dependent with 108 pfu IM being the most immunogenic treatment. Binding antibodies against gp120 and p24 were detectable in all vaccination groups with ADCC capacity detectable at the highest dose (40% positive at 108 pfu IM). Conclusions/Significance MVA-CMDR delivered both intramuscularly and intradermally was safe, well-tolerated and elicited durable cell

  3. Petrological Features of The Post-Collisional Volcanics on the Izmir-Ankara-Erzincan Suture Zone at Around Almus and Yıldızeli Regions, NE Turkey.

    NASA Astrophysics Data System (ADS)

    Göçmengil, G.; Karacik, Z.; Genç, Ş. C.

    2014-12-01

    Following the closure of the northern Neo-Tethyan ocean, post-collisional magmatism developed both on the Izmir-Ankara-Erzincan suture zone (IAESZ) and the northern (Pontides) and southern (Kırşehir block) continents. Cenozoic volcanics (particularly Middle to Upper Eocene) from the Almus and Yıldızeli regions (NE, Turkey) have poorly known and exposed along the northern and southern part of the IAESZ respectively. In this presentation; we present geological, geochemical and isotopic data of these volcanic rocks to characterize the petrological evolution and petrogenesis on the different tectonic blocks. Almus region, have a composite basement of Mesozoic metamorphic and ophiolitic rocks. Volcanic and sedimentary units of the Middle Eocene covering the basement units have a stratigraphic sequence of: a basal conglomerate; fossiliferous sandstone/shale; epiclastic rocks; auto-brecciated lavas with basalt/basaltic andesite lava flows. All these units are cut by trachyte stocks. Besides, basement of Yıldızeli region consisting of Cretaceous Kırşehir block metamorphics with IAESZ melangé and flysch units. Volcanic and sedimentary units covers the basement are trachyte-trachyandesite lavas; fossiliferous limestone; basalt/basaltic andesite lava flows; pyroclastic units with dacitic lavas. Basalt/basaltic andesites from Almus region are sub-alkaline/mildly alkaline and display middle to high-K character. REE data display relative enrichments in LILE (Sr, K, Rb, Ba, Th) together with negative anomalies of Nb, Ta and P. Trachyte stocks are shoshonitic and display LILE enrichment together with negative patters of Nb, Ta, P and Eu. Besides, trachyte-trachyandesite and basalt/basaltic andesite from Yıldızeli region are sub-alkaline/mildly alkaline with middle-K to shoshonitic character. REE patterns show enrichments in LILE and depletion of Nb, Ta, P and Ti for both rock suites. The 87Sr/86Sr and 143Nd/144Nd ratios of volcanic rocks from both regions, range from 0

  4. Tectono-stratigraphic evolution and exhumation of the Haymana basin: Unravelling the subduction and collision history of Neotethys in Turkey

    NASA Astrophysics Data System (ADS)

    Gülyüz, Erhan; Özkaptan, Murat; Lefebvre, Côme; Kaymakci, Nuretdin; Persano, Cristina; Stuart, Finlay M.

    2014-05-01

    The Haymana basin straddles the Izmir-Ankara-Erzincan Suture Zone (IAESZ) in the north and Intra-Tauride Suture Zone (ITSZ) in the south. The two suture zones developed in response to the subduction and demise of Neotethys Ocean in Turkey during the late Cretaceous to early Tertiary; the tectonic significance of the basin and its relationship with the ITSZ are still poorly constrained. In order to unravel subduction and subsequent collision history of the Neotethys in the region, we have carried out a detailed analysis of the stratigraphy and sedimentology of the Haymana basin infill and, using a combination of palaeomagnetic and thermochronometric data we have unravelled its structural evolution since its formation. The basin developed on the IAESZ and comprises fore-arc late Cretaceous to foreland Middle Eocene sedimentary sequences. The analysis of the sedimentogical facies and depositional environments indicate four Late Cretaceous to Paleogene key sequences in the basin. These sequences grade laterally and vertically into each other and are continuous from the late Cretaceous to Eocene whereas local progressive syn-sedimentary unconformities and frequent depocenter migrations are common. Late Cretaceous sequences fine upward whereas coarsening upwards sequences are common in the later units. These characteristics possibly reflect the response to local uplift and subsidence in front of south-verging thrust faults associated with the transition from fore-arc to foreland basin settings, following the terminal subduction of the Neotethys at the end of Cretaceous. About 4000 paleomagnetic and magnetostratigraphic data from the basin infill units and the Neogene cover indicate large clockwise vertical axes rotations in the NW and counter-clockwise rotations in the SE part of the basin. We suggest that these rotations are related to the northward movement and indentation of the Gondwana-derived continental blocks into Eurasia. A model of southward thrust propagation

  5. K Basins Hazard Analysis

    SciTech Connect

    WEBB, R.H.

    1999-12-29

    This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Safety Analysis Report (HNF-SD-WM-SAR-062, Rev.4). This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report.

  6. K Basin Hazard Analysis

    SciTech Connect

    PECH, S.H.

    2000-08-23

    This report describes the methodology used in conducting the K Basins Hazard Analysis, which provides the foundation for the K Basins Final Safety Analysis Report. This hazard analysis was performed in accordance with guidance provided by DOE-STD-3009-94, Preparation Guide for U. S. Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports and implements the requirements of DOE Order 5480.23, Nuclear Safety Analysis Report.

  7. Nam Con Son Basin

    SciTech Connect

    Tin, N.T.; Ty, N.D.; Hung, L.T.

    1994-07-01

    The Nam Con Son basin is the largest oil and gas bearing basin in Vietnam, and has a number of producing fields. The history of studies in the basin can be divided into four periods: Pre-1975, 1976-1980, 1981-1989, and 1990-present. A number of oil companies have carried out geological and geophysical studies and conducted drilling activities in the basin. These include ONGC, Enterprise Oil, BP, Shell, Petro-Canada, IPL, Lasmo, etc. Pre-Tertiary formations comprise quartz diorites, granodiorites, and metamorphic rocks of Mesozoic age. Cenozoic rocks include those of the Cau Formation (Oligocene and older), Dua Formation (lower Miocene), Thong-Mang Cau Formation (middle Miocene), Nam Con Son Formation (upper Miocene) and Bien Dong Formation (Pliocene-Quaternary). The basement is composed of pre-Cenozoic formations. Three fault systems are evident in the basin: north-south fault system, northeast-southwest fault system, and east-west fault system. Four tectonic zones can also be distinguished: western differentiated zone, northern differentiated zone, Dua-Natuna high zone, and eastern trough zone.

  8. SURVEY OF CROSS-BASIN BOAT TRAFFIC, ATCHAFALAYA BASIN, LOUISIANA

    EPA Science Inventory

    For flood control and for the preservation and enhancement of environmental quality of overflow swamp habitats, introduction of sediment from the Atchafalaya Basin Main Channel into backwater areas of the Atchafalaya Basin Floodway should be minimized. This introduction occurs ma...

  9. River basin management

    SciTech Connect

    Newsome, D.H.; Edwards, A.M.C.

    1984-01-01

    The quality of water is of paramount importance in the management of water resources - including marine waters. A quantitative knowledge of water quality and the factors governing it is required to formulate and implement strategies requiring an inter-disciplinary approach. The overall purpose of this conference was to bring together the latest work on water quality aspects of river basin management. These proceedings are structured on the basis of five themes: problems in international river basins; the contribution of river systems to estuarial and marine pollution; the setting of standards; monitoring; and practical water quality management including use of mathematical models. They are followed by papers from the workshop on advances in the application of mathematical modelling to water quality management, which represent some of the current thinking on the problems and concepts of river basin management.

  10. Geology, exploration status of Uruguay's sedimentary basins

    SciTech Connect

    Goso, C.; Santa Ana, H. de )

    1994-02-07

    This article attempts to present the geological characteristics and tectonic and sedimentary evolution of Uruguayan basins and the extent to which they have been explored. Uruguay is on the Atlantic coast of South America. The country covers about 318,000 sq km, including offshore and onshore territories corresponding to more than 65% of the various sedimentary basins. Four basins underlie the country: the Norte basin, the Santa Lucia basin, the offshore Punta del Este basin, and the offshore-onshore Pelotas-Merin basin. The Norte basin is a Paleozoic basin while the others are Mesozoic basins. Each basin has been explored to a different extent, as this paper explains.

  11. Trinity river basin, Texas

    USGS Publications Warehouse

    Ulery, Randy L.; Van Metre, Peter C.; Crossfield, Allison S.

    1993-01-01

    In 1991 the Trinity River Basin National Water-Quality Assessment (NAWQA) will include assessments of surface-water and ground-water quality. Initial efforts have focused on identifying water-quality issues in the basin and on the environmental factors underlying those issues. Physical characteristics described include climate, geology, soils, vegetation, physiography, and hydrology. Cultural characteristics discussed include population distribution, land use and land cover, agricultural practices, water use, an reservoir operations. Major water-quality categories are identified and some of the implications of the environmental factors for water quality are presented.

  12. Introduction of the six major genomic deletions of modified vaccinia virus Ankara (MVA) into the parental vaccinia virus is not sufficient to reproduce an MVA-like phenotype in cell culture and in mice.

    PubMed

    Meisinger-Henschel, Christine; Späth, Michaela; Lukassen, Susanne; Wolferstätter, Michael; Kachelriess, Heike; Baur, Karen; Dirmeier, Ulrike; Wagner, Markus; Chaplin, Paul; Suter, Mark; Hausmann, Jürgen

    2010-10-01

    Modified vaccinia virus Ankara (MVA) has a highly restricted host range in cell culture and is apathogenic in vivo. MVA was derived from the parental chorioallantois vaccinia virus Ankara (CVA) by more than 570 passages in chicken embryo fibroblast (CEF) cells. During CEF cell passaging, six major deletions comprising 24,668 nucleotides occurred in the CVA genome. We have cloned both the MVA and the parental CVA genome as bacterial artificial chromosomes (BACs) and have sequentially introduced the six major MVA deletions into the cloned CVA genome. Reconstituted mutant CVA viruses containing up to six major MVA deletions showed no detectable replication restriction in 12 of 14 mammalian cell lines tested; the exceptions were rabbit cell lines RK13 and SIRC. In mice, CVA mutants with up to three deletions showed slightly enhanced virulence, suggesting that gene deletion in replicating vaccinia virus (VACV) can result in gain of fitness in vivo. CVA mutants containing five or all six deletions were still pathogenic, with a moderate degree of attenuation. Deletion V was mainly responsible for the attenuated phenotype of these mutants. In conclusion, loss or truncation of all 31 open reading frames in the six major deletions is not sufficient to reproduce the specific MVA phenotype of strong attenuation and highly restricted host range. Mutations in viral genes outside or in association with the six major deletions appear to contribute significantly to this phenotype. Host range restriction and avirulence of MVA are most likely a cooperative effect of gene deletions and mutations involving the major deletions. PMID:20668072

  13. Introduction of the Six Major Genomic Deletions of Modified Vaccinia Virus Ankara (MVA) into the Parental Vaccinia Virus Is Not Sufficient To Reproduce an MVA-Like Phenotype in Cell Culture and in Mice▿

    PubMed Central

    Meisinger-Henschel, Christine; Späth, Michaela; Lukassen, Susanne; Wolferstätter, Michael; Kachelriess, Heike; Baur, Karen; Dirmeier, Ulrike; Wagner, Markus; Chaplin, Paul; Suter, Mark; Hausmann, Jürgen

    2010-01-01

    Modified vaccinia virus Ankara (MVA) has a highly restricted host range in cell culture and is apathogenic in vivo. MVA was derived from the parental chorioallantois vaccinia virus Ankara (CVA) by more than 570 passages in chicken embryo fibroblast (CEF) cells. During CEF cell passaging, six major deletions comprising 24,668 nucleotides occurred in the CVA genome. We have cloned both the MVA and the parental CVA genome as bacterial artificial chromosomes (BACs) and have sequentially introduced the six major MVA deletions into the cloned CVA genome. Reconstituted mutant CVA viruses containing up to six major MVA deletions showed no detectable replication restriction in 12 of 14 mammalian cell lines tested; the exceptions were rabbit cell lines RK13 and SIRC. In mice, CVA mutants with up to three deletions showed slightly enhanced virulence, suggesting that gene deletion in replicating vaccinia virus (VACV) can result in gain of fitness in vivo. CVA mutants containing five or all six deletions were still pathogenic, with a moderate degree of attenuation. Deletion V was mainly responsible for the attenuated phenotype of these mutants. In conclusion, loss or truncation of all 31 open reading frames in the six major deletions is not sufficient to reproduce the specific MVA phenotype of strong attenuation and highly restricted host range. Mutations in viral genes outside or in association with the six major deletions appear to contribute significantly to this phenotype. Host range restriction and avirulence of MVA are most likely a cooperative effect of gene deletions and mutations involving the major deletions. PMID:20668072

  14. 'East Basin' Panorama

    NASA Technical Reports Server (NTRS)

    2005-01-01

    [figure removed for brevity, see original site] Click on the image for 'East Basin' Panorama (QTVR)

    NASA's Mars Exploration Rover Spirit used its panoramic camera to obtain this view of the impact feature called 'East Basin' to the northeast of 'Husband Hill.' The images combined into this mosaic were taken during Spirit's 653rd Martian day, or sol (Nov. 3, 2005), just before Spirit descended eastward onto 'Haskin Ridge.' The view is about 150 degrees wide. It is an approximately true-color rendering generated using the camera's 750-nanometer, 530-nanometer, and 480-nanometer filters.

    Dark features on the far side of the basin, just left of center in this view, are basaltic sand deposits that were emplaced on the lee sides of hills by northwesterly winds. Haskin Ridge is visible along the right margin of the image, capped by a light-toned layer of rock. Spirit investigated the light-toned rock unit after taking this image. The basaltic plains located east of the 'Columbia Hills' can be seen in the distance beyond 'East Basin.' The rim of Thira crater is just visible on the distant horizon some 15 kilometers (9.3 miles) away.

  15. Bransfield Basin and Cordilleran Orogenesis

    NASA Astrophysics Data System (ADS)

    Dalziel, I. W.; Austin, J. A.; Barker, D. H.; Christensen, G. L.

    2003-12-01

    Tectonic uplift of the Andean Cordillera was initiated in the mid-Cretaceous with inversion of a composite marginal basin along 7500 km of the continental margin of South America, from Peru to Tierra del Fuego and the North Scotia Ridge. In the southernmost Andes, from 50-56 degrees S, the quasi-oceanic floor of this basin is preserved in the obducted ophiolitic rocks of the Rocas Verdes (Green Rocks) basin. We suggest that the basin beneath Bransfield Strait, 61-64 degrees S, separating the South Shetland Islands from the Antarctic Peninsula, constitutes a modern analog for the Rocas Verdes basin. Marine geophysical studies of Bransfield basin have been undertaken over the past 12 years by the Institute for Geophysics, University of Texas at Austin, under the auspices of the Ocean Sciences Division and United States Antarctic Program, National Science Foundation. These studies have elucidated the structure and evolution of Bransfield basin for comparison with the Rocas Verdes basin, with a view to eventual forward modeling of the evolution of a hypothetical cordilleran orogen by compression and inversion of the basin. These are the processes that can be observed in the tectonic transformation of the Rocas Verdes basin into the southernmost Andean cordillera, as South America moved rapidly westward in an Atlantic-Indian ocean hot-spot reference frame during the mid-Cretaceous. Multi-channel reflection seismic data from the Bransfield basin reveal an asymmetric structural architecture characterized by steeply-dipping normal faults flanking the South Shetlands island arc and gently dipping listric normal faults along the Antarctic Peninsula margin. Normal fault polarity reversals appear to be related to distributed loci of magmatic activity within the basin. This architecture is remarkably similar to that deduced from field structural studies of the Rocas Verdes basin. Notably, the oceanward-dipping, low angle normal faults along the Antarctic Peninsula margin

  16. Newly Discovered Martian Impact Basins

    NASA Technical Reports Server (NTRS)

    Stam, M.

    1985-01-01

    Three previously unrecognized Martian impact basins were discovered through detailed mapping of landforms, structures and terrains near Cassini and Al Qahira basins. Al Qahira A lies on the Martian dichotomy boundary and intersects the older basin, Al Qahira. It has four rings that are expressed by a variety of landforms. Southwestward Al Qahira A is out by a younger Basin, Al Qahira B. Al Qahira B is a highly degraded basin with one identifiable ring. Its ring is expressed by a few massifs, knobs and inward-facing scarps, but is recognized by the distributions of wrinkle ridges and plains units. Cassini A lies southward of the younger Cassini Basin and is intersected by it. It probably has four rings. The importance of detailed mapping of various types of landforms and terrains to the discovery of basins on Mars are demonstrated.

  17. Natural frequency of regular basins

    NASA Astrophysics Data System (ADS)

    Tjandra, Sugih S.; Pudjaprasetya, S. R.

    2014-03-01

    Similar to the vibration of a guitar string or an elastic membrane, water waves in an enclosed basin undergo standing oscillatory waves, also known as seiches. The resonant (eigen) periods of seiches are determined by water depth and geometry of the basin. For regular basins, explicit formulas are available. Resonance occurs when the dominant frequency of external force matches the eigen frequency of the basin. In this paper, we implement the conservative finite volume scheme to 2D shallow water equation to simulate resonance in closed basins. Further, we would like to use this scheme and utilizing energy spectra of the recorded signal to extract resonant periods of arbitrary basins. But here we first test the procedure for getting resonant periods of a square closed basin. The numerical resonant periods that we obtain are comparable with those from analytical formulas.

  18. Global analysis of intraplate basins

    NASA Astrophysics Data System (ADS)

    Heine, C.; Mueller, D. R.; Dyksterhuis, S.

    2005-12-01

    Broad intraplate sedimentary basins often show a mismatch of lithospheric extension factors compared to those inferred from sediment thickness and subsidence modelling, not conforming to the current understanding of rift basin evolution. Mostly, these basins are underlain by a very heterogeneous and structurally complex basement which has been formed as a product of Phanerozoic continent-continent or terrane/arc-continent collision and is usually referred to as being accretionary. Most likely, the basin-underlying substrate is one of the key factors controlling the style of extension. In order to investigate and model the geodynamic framework and mechanics controlling formation and evolution of these long-term depositional regions, we have been analysing a global set of more than 200 basins using various remotely sensed geophysical data sets and relational geospatial databases. We have compared elevation, crustal and sediment thickness, heatflow, crustal structure, basin ages and -geometries with computed differential beta, anomalous tectonic subsidence, and differential extension factor grids for these basins. The crust/mantle interactions in the basin regions are investigated using plate tectonic reconstructions in a mantle convection framework for the last 160 Ma. Characteristic parameters and patterns derived from this global analysis are then used to generate a classification scheme, to estimate the misfit between models derived from either crustal thinning or sediment thickness, and as input for extension models using particle-in-cell finite element codes. Basins with high differential extension values include the ``classical'' intraplate-basins, like the Michigan Basin in North America, the Zaire Basin in Africa, basins of the Arabian Penisula, and the West Siberian Basin. According to our global analysis so far, these basins show, that with increasing basin age, the amount of crustal extension vs. the extension values estimated from sediment thickness

  19. Buried-euxenic-basin model sets Tarim basin potential

    SciTech Connect

    Hsu, K.J. )

    1994-11-28

    The Tarim basin is the largest of the three large sedimentary basins of Northwest China. The North and Southwest depressions of Tarim are underlain by thick sediments and very thin crust. The maximum sediment thickness is more than 15 km. Of the several oil fields of Tarim, the three major fields were discovered during the last decade, on the north flank of the North depression and on the Central Tarim Uplift. The major targets of Tarim, according to the buried-euxenic-basin model, should be upper Paleozoic and lower Mesozoic reservoirs trapping oil and gas condensates from lower Paleozoic source beds. The paper describes the basin and gives a historical perspective of exploration activities and discoveries. It then explains how this basin can be interpreted by the buried-euxenic-basin model. The buried-euxenic-basin model postulates four stages of geologic evolution: (1) Sinian and early Paleozoic platform sedimentation on relic arcs and deep-marine sedimentation in back-arc basins in Xinjiang; (2) Late Paleozoic foreland-basin sedimentation in north Tarim; (3) Mesozoic and Paleogene continental deposition, subsidence under sedimentary load; and (4) Neogene pull-apart basin, wrench faulting and extension.

  20. Canada Basin revealed

    USGS Publications Warehouse

    Mosher, David C.; Shimeld, John; Hutchinson, Deborah R.; Chian, D; Lebedeva-Ivanova, Nina; Jackson, Ruth

    2012-01-01

    More than 15,000 line-km of new regional seismic reflection and refraction data in the western Arctic Ocean provide insights into the tectonic and sedimentologic history of Canada Basin, permitting development of new geologic understanding in one of Earth's last frontiers. These new data support a rotational opening model for southern Canada Basin. There is a central basement ridge possibly representing an extinct spreading center with oceanic crustal velocities and blocky basement morphology characteristic of spreading centre crust surrounding this ridge. Basement elevation is lower in the south, mostly due to sediment loading subsidence. The sedimentary succession is thickest in the southern Beaufort Sea region, reaching more than 15 km, and generally thins to the north and west. In the north, grabens and half-grabens are indicative of extension. Alpha-Mendeleev Ridge is a large igneous province in northern Amerasia Basin, presumably emplaced synchronously with basin formation. It overprints most of northern Canada Basin structure. The seafloor and sedimentary succession of Canada Basin is remarkably flat-lying in its central region, with little bathymetric change over most of its extent. Reflections that correlate over 100s of kms comprise most of the succession and on-lap bathymetric and basement highs. They are interpreted as representing deposits from unconfined turbidity current flows. Sediment distribution patterns reflect changing source directions during the basin’s history. Initially, probably late Cretaceous to Paleocene synrift sediments sourced from the Alaska and Mackenzie-Beaufort margins. This unit shows a progressive series of onlap unconformities with a younging trend towards Alpha and Northwind ridges, likely a response to contemporaneous subsidence. Sediment source direction appeared to shift to the Canadian Arctic Archipelago margin for the Eocene and Oligocene, likely due to uplift of Arctic islands during the Eurekan Orogeny. The final

  1. Mercury's Caloris Basin

    NASA Technical Reports Server (NTRS)

    2001-01-01

    Mercury: Computer Photomosaic of the Caloris Basin

    The largest basin on Mercury (1300 km or 800 miles across) was named Caloris (Greek for 'hot') because it is one of the two areas on the planet that face the Sun at perihelion.

    The Image Processing Lab at NASA's Jet Propulsion Laboratory produced this photomosaic using computer software and techniques developed for use in processing planetary data. The Mariner 10 spacecraft imaged the region during its initial flyby of the planet.

    The Mariner 10 spacecraft was launched in 1974. The spacecraft took images of Venus in February 1974 on the way to three encounters with Mercury in March and September 1974 and March 1975. The spacecraft took more than 7,000 images of Mercury, Venus, the Earth and the Moon during its mission.

    The Mariner 10 Mission was managed by the Jet Propulsion Laboratory for NASA's Office of Space Science in Washington, D.C.

  2. Petroleum basin studies

    SciTech Connect

    Shannon, P.M. ); Naylor, D. )

    1989-01-01

    This book reviews the tectonic setting, basin development and history of exploration of a number of selected petroleum provinces located in a variety of settings in the Middle East, North Sea, Nigeria, the Rocky Mountains, Gabon and China. This book illustrates how ideas and models developed in one area may be applied to other regions. Regional reviews and the reassessment of petroleum provinces are presented.

  3. ADVANCED CHEMISTRY BASINS MODEL

    SciTech Connect

    William Goddard III; Lawrence Cathles III; Mario Blanco; Paul Manhardt; Peter Meulbroek; Yongchun Tang

    2004-05-01

    The advanced Chemistry Basin Model project has been operative for 48 months. During this period, about half the project tasks are on projected schedule. On average the project is somewhat behind schedule (90%). Unanticipated issues are causing model integration to take longer then scheduled, delaying final debugging and manual development. It is anticipated that a short extension will be required to fulfill all contract obligations.

  4. Albuquerque Basin seismic network

    USGS Publications Warehouse

    Jaksha, Lawrence H.; Locke, Jerry; Thompson, J.B.; Garcia, Alvin

    1977-01-01

    The U.S. Geological Survey has recently completed the installation of a seismic network around the Albuquerque Basin in New Mexico. The network consists of two seismometer arrays, a thirteen-station array monitoring an area of approximately 28,000 km 2 and an eight-element array monitoring the area immediately adjacent to the Albuquerque Seismological Laboratory. This report describes the instrumentation deployed in the network.

  5. Dimension of fractal basin boundaries

    SciTech Connect

    Park, B.S.

    1988-01-01

    In many dynamical systems, multiple attractors coexist for certain parameter ranges. The set of initial conditions that asymptotically approach each attractor is its basin of attraction. These basins can be intertwined on arbitrary small scales. Basin boundary can be either smooth or fractal. Dynamical systems that have fractal basin boundary show final state sensitivity of the initial conditions. A measure of this sensitivity (uncertainty exponent {alpha}) is related to the dimension of the basin boundary d = D - {alpha}, where D is the dimension of the phase space and d is the dimension of the basin boundary. At metamorphosis values of the parameter, there might happen a conversion from smooth to fractal basin boundary (smooth-fractal metamorphosis) or a conversion from fractal to another fractal basin boundary characteristically different from the previous fractal one (fractal-fractal metamorphosis). The dimension changes continuously with the parameter except at the metamorphosis values where the dimension of the basin boundary jumps discontinuously. We chose the Henon map and the forced damped pendulum to investigate this. Scaling of the basin volumes near the metamorphosis values of the parameter is also being studied for the Henon map. Observations are explained analytically by using low dimensional model map.

  6. Advanced Chemistry Basins Model

    SciTech Connect

    William Goddard; Mario Blanco; Lawrence Cathles; Paul Manhardt; Peter Meulbroek; Yongchun Tang

    2002-11-10

    The DOE-funded Advanced Chemistry Basin model project is intended to develop a public domain, user-friendly basin modeling software under PC or low end workstation environment that predicts hydrocarbon generation, expulsion, migration and chemistry. The main features of the software are that it will: (1) afford users the most flexible way to choose or enter kinetic parameters for different maturity indicators; (2) afford users the most flexible way to choose or enter compositional kinetic parameters to predict hydrocarbon composition (e.g., gas/oil ratio (GOR), wax content, API gravity, etc.) at different kerogen maturities; (3) calculate the chemistry, fluxes and physical properties of all hydrocarbon phases (gas, liquid and solid) along the primary and secondary migration pathways of the basin and predict the location and intensity of phase fractionation, mixing, gas washing, etc.; and (4) predict the location and intensity of de-asphaltene processes. The project has be operative for 36 months, and is on schedule for a successful completion at the end of FY 2003.

  7. Great Basin Paleontological Bibliography

    USGS Publications Warehouse

    Blodgett, Robert B.; Zhang, Ning; Hofstra, Albert H.; Morrow, Jared R.

    2007-01-01

    Introduction This work was conceived as a derivative product for 'The Metallogeny of the Great Basin' project of the Mineral Resources Program of the U.S. Geological Survey. In the course of preparing a fossil database for the Great Basin that could be accessed from the Internet, it was determined that a comprehensive paleontological bibliography must first be compiled, something that had not previously been done. This bibliography includes published papers and abstracts as well as unpublished theses and dissertations on fossils and stratigraphy in Nevada and adjoining portions of California and Utah. This bibliography is broken into first-order headings by geologic age, secondary headings by taxonomic group, followed by ancillary topics of interest to both paleontologists and stratigraphers; paleoecology, stratigraphy, sedimentary petrology, paleogeography, tectonics, and petroleum potential. References were derived from usage of Georef, consultation with numerous paleontologists and geologists working in the Great Basin, and literature currently on hand with the authors. As this is a Web-accessible bibliography, we hope to periodically update it with new citations or older references that we have missed during this compilation. Hence, the authors would be grateful to receive notice of any new or old papers that the readers think should be added. As a final note, we gratefully acknowledge the helpful reviews provided by A. Elizabeth J. Crafford (Anchorage, Alaska) and William R. Page (USGS, Denver, Colorado).

  8. Caribbean basin framework, 3: Southern Central America and Colombian basin

    SciTech Connect

    Kolarsky, R.A.; Mann, P. )

    1991-03-01

    The authors recognize three basin-forming periods in southern Central America (Panama, Costa Rica, southern Nicaragua) that they attempt to correlate with events in the Colombian basin (Bowland, 1984): (1) Early-Late Cretaceous island arc formation and growth of the Central American island arc and Late Cretaceous formation of the Colombian basin oceanic plateau. During latest Cretaceous time, pelagic carbonate sediments blanketed the Central American island arc in Panama and Costa Rica and elevated blocks on the Colombian basin oceanic plateau; (2) middle Eocene-middle Miocene island arc uplift and erosion. During this interval, influx of distal terrigenous turbidites in most areas of Panama, Costa Rica, and the Colombian basin marks the uplift and erosion of the Central American island arc. In the Colombian basin, turbidites fill in basement relief and accumulate to thicknesses up to 2 km in the deepest part of the basin. In Costa Rica, sedimentation was concentrated in fore-arc (Terraba) and back-arc (El Limon) basins; (3) late Miocene-Recent accelerated uplift and erosion of segments of the Central American arc. Influx of proximal terrigenous turbidites and alluvial fans in most areas of Panama, Costa Rica, and the Colombian basin marks collision of the Panama arc with the South American continent (late Miocene early Pliocene) and collision of the Cocos Ridge with the Costa Rican arc (late Pleistocene). The Cocos Ridge collision inverted the Terraba and El Limon basins. The Panama arc collision produced northeast-striking left-lateral strike-slip faults and fault-related basins throughout Panama as Panama moved northwest over the Colombian basin.

  9. Ophiolite suture in Central Anatolia: New insights from the Sivas Basin (Turkey)

    NASA Astrophysics Data System (ADS)

    Legeay, Etienne; Ringenbach, Jean-Claude; Mohn, Geoffroy; Kergaravat, Charlie; Callot, Jean-Paul

    2015-04-01

    The closure of the Neotethys is classically associated with the obduction of ophiolitic rocks, defining successive suture zones. Theses Alpine-Himalayan ophiolites reflect a complex and still poorly understood paleogeographic framework. In Turkey, various types of ophiolite have been described, involving supra subduction zone and ophiolitic melanges as well. Hence reconstructions of the Anatolian continent assumed the amalgamation of one or more continental fragments during the Mesozoic-Early Cenozoic time. The Sivas Basin is located in a key position at the junction of three crustal domains: the Pontides to the North, the Anatolide - Tauride platforms to the South, and the Central Anatolian Crystalline Complex to the West. These blocks are separated to the North by the Izmir-Ankara-Erzican suture zone (IAESZ), and by the Inner Tauride suture zone (ITSZ) to the South. Ophiolitic outcrops are common in this area, mainly on the basin borders, and sometimes within the central part. These green rocks have been previously related to the ophiolitic melange from the IAESZ in Northern part and to the ITSZ for the southern parts. Recent fieldwork on the southern edge of the Sivas Basin allows a proper description of the ophiolitic complex, including from bottom to top: (1) a large volume of intensely serpentinized peridotites, strongly veined with chrysotile, with minor gabbroic intrusions; (2) upward, serpentinized mantle rocks affected by a cataclastic deformation associated with tectonic breccias and ophicalcites ; and eventually, (3) on the top of the mantle, silicates deposits similar to radiolarian cherts cover by sedimentary breccias with mantle clasts. New geochemical analysis and subsurface data confirm the existence of a southward obducted slice of ophiolite over more than 100km from North to South, forming the basement of the Sivas Basin since the Campanian. This southward obduction related to the IAESZ appears similar to slow spreading ridge or hyper

  10. Great Basin paleontological database

    USGS Publications Warehouse

    Zhang, N.; Blodgett, R.B.; Hofstra, A.H.

    2008-01-01

    The U.S. Geological Survey has constructed a paleontological database for the Great Basin physiographic province that can be served over the World Wide Web for data entry, queries, displays, and retrievals. It is similar to the web-database solution that we constructed for Alaskan paleontological data (www.alaskafossil.org). The first phase of this effort was to compile a paleontological bibliography for Nevada and portions of adjacent states in the Great Basin that has recently been completed. In addition, we are also compiling paleontological reports (Known as E&R reports) of the U.S. Geological Survey, which are another extensive source of l,egacy data for this region. Initial population of the database benefited from a recently published conodont data set and is otherwise focused on Devonian and Mississippian localities because strata of this age host important sedimentary exhalative (sedex) Au, Zn, and barite resources and enormons Carlin-type An deposits. In addition, these strata are the most important petroleum source rocks in the region, and record the transition from extension to contraction associated with the Antler orogeny, the Alamo meteorite impact, and biotic crises associated with global oceanic anoxic events. The finished product will provide an invaluable tool for future geologic mapping, paleontological research, and mineral resource investigations in the Great Basin, making paleontological data acquired over nearly the past 150 yr readily available over the World Wide Web. A description of the structure of the database and the web interface developed for this effort are provided herein. This database is being used ws a model for a National Paleontological Database (which we am currently developing for the U.S. Geological Survey) as well as for other paleontological databases now being developed in other parts of the globe. ?? 2008 Geological Society of America.

  11. Apollo Basin, Moon: Estimation of Impact Conditions

    NASA Astrophysics Data System (ADS)

    Echaurren, J. C.

    2015-07-01

    The Apollo Basin is a, pre-Nectarian, multi-ring basin located within the large South Pole-Aitken Basin (SPA). Multispectral data from both Galileo and Clementine showed that the composition of materials in Apollo is distinct…

  12. Advanced Chemistry Basins Model

    SciTech Connect

    Blanco, Mario; Cathles, Lawrence; Manhardt, Paul; Meulbroek, Peter; Tang, Yongchun

    2003-02-13

    The objective of this project is to: (1) Develop a database of additional and better maturity indicators for paleo-heat flow calibration; (2) Develop maturation models capable of predicting the chemical composition of hydrocarbons produced by a specific kerogen as a function of maturity, heating rate, etc.; assemble a compositional kinetic database of representative kerogens; (3) Develop a 4 phase equation of state-flash model that can define the physical properties (viscosity, density, etc.) of the products of kerogen maturation, and phase transitions that occur along secondary migration pathways; (4) Build a conventional basin model and incorporate new maturity indicators and data bases in a user-friendly way; (5) Develop an algorithm which combines the volume change and viscosities of the compositional maturation model to predict the chemistry of the hydrocarbons that will be expelled from the kerogen to the secondary migration pathways; (6) Develop an algorithm that predicts the flow of hydrocarbons along secondary migration pathways, accounts for mixing of miscible hydrocarbon components along the pathway, and calculates the phase fractionation that will occur as the hydrocarbons move upward down the geothermal and fluid pressure gradients in the basin; and (7) Integrate the above components into a functional model implemented on a PC or low cost workstation.

  13. Atlantic marginal basins of Africa

    SciTech Connect

    Moore, G.T.

    1988-02-01

    The over 10,000-km long Atlantic margin of Africa is divisible into thirty basins or segments of the margin that collectively contain over 18.6 x 10/sup 6/ km/sup 3/ of syn-breakup and post-breakup sediments. Twenty of these basins contain a sufficiently thick volume of sediments to be considered prospects. These basins lie, at least partially, within the 200 m isobath. The distribution of source rocks is broad enough to give potential to each of these basins. The sedimentation patterns, tectonics, and timing of events differ from basin to basin and are related directly to the margin's complex history. Two spreading modes exist: rift and transform. Rifting dates from Late Triassic-Early Jurassic in the northwest to Early Cretaceous south of the Niger Delta. A complex transform fault system separated these two margins. Deep-water communication between the two basins became established in the middle Cretaceous. This Mesozoic-Cenozoic cycle of rifting and seafloor spreading has segmented the margin and where observable, basins tend to be bounded by these segments.

  14. MASSACHUSETTS DRAINAGE SUB-BASINS

    EPA Science Inventory

    MassGIS has produced a statewide digital datalayer of the approximately 2300 sub-basins as defined and used by the USGS Water Resources Division and the Mass Water Resources Commission and as modified by Executive Office of Environmental Affairs (EOEA) agencies. These sub-basins...

  15. Estancia Basin dynamic water budget.

    SciTech Connect

    Thomas, Richard P.

    2004-09-01

    The Estancia Basin lies about 30 miles to the east of Albuquerque, NM. It is a closed basin in terms of surface water and is somewhat isolated in terms of groundwater. Historically, the primary natural outlet for both surface water and groundwater has been evaporation from the salt lakes in the southeastern portion of the basin. There are no significant watercourses that flow into this basin and groundwater recharge is minimal. During the 20th Century, agriculture grew to become the major user of groundwater in the basin. Significant declines in groundwater levels have accompanied this agricultural use. Domestic and municipal use of the basin groundwater is increasing as Albuquerque population continues to spill eastward into the basin, but this use is projected to be less than 1% of agricultural use well into the 21st Century. This Water Budget model keeps track of the water balance within the basin. The model considers the amount of water entering the basin and leaving the basin. Since there is no significant surface water component within this basin, the balance of water in the groundwater aquifer constitutes the primary component of this balance. Inflow is based on assumptions for recharge made by earlier researchers. Outflow from the basin is the summation of the depletion from all basin water uses. The model user can control future water use within the basin via slider bars that set values for population growth, water system per-capita use, agricultural acreage, and the types of agricultural diversion. The user can also adjust recharge and natural discharge within the limits of uncertainty for those parameters. The model runs for 100 years beginning in 1940 and ending in 2040. During the first 55 years model results can be compared to historical data and estimates of groundwater use. The last 45 years are predictive. The model was calibrated to match to New Mexico Office of State Engineer (NMOSE) estimates of aquifer storage during the historical period by

  16. Stratigraphic modeling of sedimentary basins

    SciTech Connect

    Aigner, T. ); Lawrence, D.T. )

    1990-11-01

    A two-dimensional stratigraphic forward model has been successfully applied and calibrated in clastic, carbonate, and mixed clastic/carbonate regimes. Primary input parameters are subsidence, sea level, volume of clastics, and carbonate growth potential. Program output includes sequence geometries, facies distribution lithology distribution, chronostratigraphic plots, burial history plots, thermal and maturity histories, and crossplots. The program may be used to predict reservoir distribution, to constrain interpretations of well and seismic data, to rapidly test exploration scenarios in frontier basins, and to evaluate the fundamental controls on observed basin stratigraphy. Applications to data sets from Main Pass (US Gulf Coast), Offshore Sarawak (Malaysia), Rub'al Khali basin (Oman), Paris basin (France), and Baltimore Canyon (US East Coast) demonstrate that the program can be used to simulate stratigraphy on a basin-wide scale as well as on the scale of individual prospects.

  17. Design and simulation of 3½-cell superconducting gun cavity and beam dynamics studies of the SASE-FEL System at the Institute of Accelerator Technologies at Ankara University

    NASA Astrophysics Data System (ADS)

    Yildiz, H. Duran; Cakir, R.; Porsuk, D.

    2015-06-01

    Design and simulation of a superconducting gun cavity with 3½ cells have been studied in order to give the first push to the electron beam for the linear accelerating system at The Institute of Accelerator Technologies at Ankara University. Electrons are accelerated through the gun cavity with the help of the Radiofrequency power suppliers from cryogenic systems. Accelerating gradient should be as high as possible to accelerate electron beam inside the cavity. In this study, electron beam reaches to 9.17 MeV energy at the end of the gun cavity with the accelerating gradient; Ec=19.21 MV/m. 1.3 GHz gun cavity consists of three TESLA-like shaped cells while the special designed gun-cell includes a cathode plug. Optimized important beam parameters inside the gun cavity, average beam current 3 mA, transverse emittance 2.5 mm mrad, repetition rate 30 MHz and other parameters are obtained for the SASE-FEL System. The Superfish/Poisson program is used to design each cell of the superconducting cavity. Superconducting gun cavity and Radiofrequency properties are studied by utilizing 2D Superfish/Poisson, 3D Computer Simulation Technology Microwave Studio, and 3D Computer Simulation Technology Particle Studio. Superfish/Poisson is also used to optimize the geometry of the cavity cells to get the highest accelerating gradient. The behavior of the particles along the beamline is included in this study. ASTRA Code is used to track the particles.

  18. Patterns of viral replication correlate with outcome in simian immunodeficiency virus (SIV)-infected macaques: effect of prior immunization with a trivalent SIV vaccine in modified vaccinia virus Ankara.

    PubMed Central

    Hirsch, V M; Fuerst, T R; Sutter, G; Carroll, M W; Yang, L C; Goldstein, S; Piatak, M; Elkins, W R; Alvord, W G; Montefiori, D C; Moss, B; Lifson, J D

    1996-01-01

    The dynamics of plasma viremia were explored in a group of 12 simian immunodeficiency virus (SIV)-infected rhesus macaques (Macaca mulatta) that had received prior immunization with either nonrecombinant or trivalent (gag-pol, env) SIV-recombinant vaccinia viruses. Three distinct patterns of viral replication observed during and following primary viremia accounted for significant differences in survival times. High-level primary plasma viremia with subsequently increasing viremia was associated with rapid progression to AIDS (n = 2). A high-level primary plasma virus load with a transient decline and subsequent progressive increase in viremia in the post-acute phase of infection was associated with progression to AIDS within a year (n = 6). Low levels of primary plasma viremia followed by sustained restriction of virus replication were associated with maintenance of normal lymphocyte subsets and intact lymphoid architecture (n = 4), reminiscent of the profile observed in human immunodeficiency virus type 1-infected long-term nonprogressors. Three of four macaques that showed this pattern had been immunized with an SIV recombinant derived from the attenuated vaccinia virus, modified vaccinia virus Ankara. These data link the dynamics and extent of virus replication to disease course and suggest that sustained suppression of virus promotes long-term, asymptomatic survival of SIV-infected macaques. These findings also suggest that vaccine modulation of host immunity may have profound beneficial effects on the subsequent disease course, even if sterilizing immunity is not achieved. PMID:8648709

  19. A DNA Prime-Modified Vaccinia Virus Ankara Boost Vaccine Encoding Thrombospondin-Related Adhesion Protein but Not Circumsporozoite Protein Partially Protects Healthy Malaria-Naive Adults against Plasmodium falciparum Sporozoite Challenge

    PubMed Central

    Dunachie, S. J.; Walther, M.; Epstein, J. E.; Keating, S.; Berthoud, T.; Andrews, L.; Andersen, R. F.; Bejon, P.; Goonetilleke, N.; Poulton, I.; Webster, D. P.; Butcher, G.; Watkins, K.; Sinden, R. E.; Levine, G. L.; Richie, T. L.; Schneider, J.; Kaslow, D.; Gilbert, S. C.; Carucci, D. J.; Hill, A. V. S.

    2006-01-01

    The safety, immunogenicity, and efficacy of DNA and modified vaccinia virus Ankara (MVA) prime-boost regimes were assessed by using either thrombospondin-related adhesion protein (TRAP) with a multiple-epitope string ME (ME-TRAP) or the circumsporozoite protein (CS) of Plasmodium falciparum. Sixteen healthy subjects who never had malaria (malaria-naive subjects) received two priming vaccinations with DNA, followed by one boosting immunization with MVA, with either ME-TRAP or CS as the antigen. Immunogenicity was assessed by ex vivo gamma interferon (IFN-γ) enzyme-linked immunospot assay (ELISPOT) and antibody assay. Two weeks after the final vaccination, the subjects underwent P. falciparum sporozoite challenge, with six unvaccinated controls. The vaccines were well tolerated and immunogenic, with the DDM-ME TRAP regimen producing stronger ex vivo IFN-γ ELISPOT responses than DDM-CS. One of eight subjects receiving the DDM-ME TRAP regimen was completely protected against malaria challenge, with this group as a whole showing significant delay to parasitemia compared to controls (P = 0.045). The peak ex vivo IFN-γ ELISPOT response in this group correlated strongly with the number of days to parasitemia (P = 0.033). No protection was observed in the DDM-CS group. Prime-boost vaccination with DNA and MVA encoding ME-TRAP but not CS resulted in partial protection against P. falciparum sporozoite challenge in the present study. PMID:16988273

  20. Efficacy of a Plasmodium vivax Malaria Vaccine Using ChAd63 and Modified Vaccinia Ankara Expressing Thrombospondin-Related Anonymous Protein as Assessed with Transgenic Plasmodium berghei Parasites

    PubMed Central

    Bauza, Karolis; Malinauskas, Tomas; Pfander, Claudia; Anar, Burcu; Jones, E. Yvonne; Billker, Oliver; Hill, Adrian V. S.

    2014-01-01

    Plasmodium vivax is the world's most widely distributed malaria parasite and a potential cause of morbidity and mortality for approximately 2.85 billion people living mainly in Southeast Asia and Latin America. Despite this dramatic burden, very few vaccines have been assessed in humans. The clinically relevant vectors modified vaccinia virus Ankara (MVA) and the chimpanzee adenovirus ChAd63 are promising delivery systems for malaria vaccines due to their safety profiles and proven ability to induce protective immune responses against Plasmodium falciparum thrombospondin-related anonymous protein (TRAP) in clinical trials. Here, we describe the development of new recombinant ChAd63 and MVA vectors expressing P. vivax TRAP (PvTRAP) and show their ability to induce high antibody titers and T cell responses in mice. In addition, we report a novel way of assessing the efficacy of new candidate vaccines against P. vivax using a fully infectious transgenic Plasmodium berghei parasite expressing P. vivax TRAP to allow studies of vaccine efficacy and protective mechanisms in rodents. Using this model, we found that both CD8+ T cells and antibodies mediated protection against malaria using virus-vectored vaccines. Our data indicate that ChAd63 and MVA expressing PvTRAP are good preerythrocytic-stage vaccine candidates with potential for future clinical application. PMID:24379295

  1. The deep Ionian Basin revisited

    NASA Astrophysics Data System (ADS)

    Tugend, Julie; Chamot-Rooke, Nicolas; Arsenikos, Stavros; Frizon de Lamotte, Dominique; Blanpied, Christian

    2016-04-01

    The deep Eastern Mediterranean Basins (Ionian and Herodotus) are characterized by thick sedimentary sequences overlying an extremely thinned basement evidenced from different geophysical methods. Yet, the nature of the crust (continental or oceanic) and the timing of the extreme crustal and lithosphere thinning in the different sub-basins remain highly controversial, casting doubts on the tectonic setting related to the formation of this segment of the North Gondwana paleo-margin. We focus on the Ionian Basin located at the western termination of the Eastern Mediterranean with the aim of identifying, characterizing and mapping the deepest sedimentary sequences. We present tentative age correlations relying on calibrations and observations from the surrounding margins and basins (Malta shelf and Escarpment, Cyrenaica margin, Sirte Basin, Apulian Platform). Two-ship deep refraction seismic data (Expanding Spread Profiles from the PASIPHAE cruise) combined with reprocessed reflection data (from the ARCHIMEDE survey) enabled us to present a homogeneous seismic stratigraphy across the basin and to investigate the velocity structure of its basement. Based on our results, and on a review of geological and geophysical observations, we suggest an Upper Triassic-Early Dogger age for the formation of the deep Ionian Basin. The nature of the underlying basement remains uncertain, both highly-thinned continental and slow-spreading type oceanic crust being compatible with the available constraints. The narrow size and relatively short-lived evolution of the Ionian Basin lead us to suggest that it is more likely the remnant of an immature oceanic basin than of a stable oceanic domain. Eventually, upscaling these results at the scale of the Eastern Mediterranean Basins highlights the complex interaction observed between two propagating oceans: The Central Atlantic and Neo-Tethys.

  2. RESERVES IN WESTERN BASINS PART IV: WIND RIVER BASIN

    SciTech Connect

    Robert Caldwell

    1998-04-01

    Vast quantities of natural gas are entrapped within various tight formations in the Rocky Mountain area. This report seeks to quantify what proportion of that resource can be considered recoverable under today's technological and economic conditions and discusses factors controlling recovery. The ultimate goal of this project is to encourage development of tight gas reserves by industry through reducing the technical and economic risks of locating, drilling and completing commercial tight gas wells. This report is the fourth in a series and focuses on the Wind River Basin located in west central Wyoming. The first three reports presented analyses of the tight gas reserves and resources in the Greater Green River Basin (Scotia, 1993), Piceance Basin (Scotia, 1995) and the Uinta Basin (Scotia, 1995). Since each report is a stand-alone document, duplication of language will exist where common aspects are discussed. This study, and the previous three, describe basin-centered gas deposits (Masters, 1979) which contain vast quantities of natural gas entrapped in low permeability (tight), overpressured sandstones occupying a central basin location. Such deposits are generally continuous and are not conventionally trapped by a structural or stratigraphic seal. Rather, the tight character of the reservoirs prevents rapid migration of the gas, and where rates of gas generation exceed rates of escape, an overpressured basin-centered gas deposit results (Spencer, 1987). Since the temperature is a primary controlling factor for the onset and rate of gas generation, these deposits exist in the deeper, central parts of a basin where temperatures generally exceed 200 F and drill depths exceed 8,000 feet. The abbreviation OPT (overpressured tight) is used when referring to sandstone reservoirs that comprise the basin-centered gas deposit. Because the gas resources trapped in this setting are so large, they represent an important source of future gas supply, prompting studies to

  3. Aleutian basin oceanic crust

    USGS Publications Warehouse

    Christeson, Gail L.; Barth, Ginger A.

    2015-01-01

    We present two-dimensional P-wave velocity structure along two wide-angle ocean bottom seismometer profiles from the Aleutian basin in the Bering Sea. The basement here is commonly considered to be trapped oceanic crust, yet there is a change in orientation of magnetic lineations and gravity features within the basin that might reflect later processes. Line 1 extends ∼225 km from southwest to northeast, while Line 2 extends ∼225 km from northwest to southeast and crosses the observed change in magnetic lineation orientation. Velocities of the sediment layer increase from 2.0 km/s at the seafloor to 3.0–3.4 km/s just above basement, crustal velocities increase from 5.1–5.6 km/s at the top of basement to 7.0–7.1 km/s at the base of the crust, and upper mantle velocities are 8.1–8.2 km/s. Average sediment thickness is 3.8–3.9 km for both profiles. Crustal thickness varies from 6.2 to 9.6 km, with average thickness of 7.2 km on Line 1 and 8.8 km on Line 2. There is no clear change in crustal structure associated with a change in orientation of magnetic lineations and gravity features. The velocity structure is consistent with that of normal or thickened oceanic crust. The observed increase in crustal thickness from west to east is interpreted as reflecting an increase in melt supply during crustal formation.

  4. K-Basins design guidelines

    SciTech Connect

    Roe, N.R.; Mills, W.C.

    1995-06-01

    The purpose of the design guidelines is to enable SNF and K Basin personnel to complete fuel and sludge removal, and basin water mitigation by providing engineering guidance for equipment design for the fuel basin, facility modifications (upgrades), remote tools, and new processes. It is not intended to be a purchase order reference for vendors. The document identifies materials, methods, and components that work at K Basins; it also Provides design input and a technical review process to facilitate project interfaces with operations in K Basins. This document is intended to compliment other engineering documentation used at K Basins and throughout the Spent Nuclear Fuel Project. Significant provisions, which are incorporated, include portions of the following: General Design Criteria (DOE 1989), Standard Engineering Practices (WHC-CM-6-1), Engineering Practices Guidelines (WHC 1994b), Hanford Plant Standards (DOE-RL 1989), Safety Analysis Manual (WHC-CM-4-46), and Radiological Design Guide (WHC 1994f). Documents (requirements) essential to the engineering design projects at K Basins are referenced in the guidelines.

  5. Basin development and petroleum potential of offshore Otway basin, Australia

    SciTech Connect

    Williamson, P.E.; O'Brien, G.W.; Swift, M.G.; Scherl, A.S.; Marlow, M.S.; Exon, N.F.; Falvey, D.A.; Lock, J.; Lockwood, K.

    1987-05-01

    The Bass Strait region in southeastern Australia contains three sedimentary basins, which are, from east to west, the Gippsland, Bass, and Otway basins. The offshore Gippsland basin is Australia's most prolific petroleum-producing province and supplies over 90% of the country's production. In contrast, exploration has been unsuccessful in the offshore portion of the Otway basin; 17 wells have been drilled, and although shows of oil and gas have been common, no commercial discoveries have been made. Many of these wells, drilled in the 1960s and 1970s, were sited using poor-quality seismic data and, as a consequence, were frequently off structure. Seismic data quality has, however, improved significantly in recent years. The present study by the Australian Bureau of Mineral Resources (BMR) involved the collection, in the offshore Otway basin, of 3700 km of high-quality, 48-channel seismic reflection data by the BMR research vessel R/V Rig Seismic. These data have been integrated with existing industry seismic data, well data, limited dredged material, and geohistory analyses in a framework study of basin development and hydrocarbon potential in this under-explored area. The offshore Otway basin extends 500 km along the southern coastline and is typically 50 km wide in water depths of less than 200 m. It contains up to 10 km of predominantly late Mesozoic to early Cenozoic sediments, which are overlain by a thin sequence of middle to late Tertiary shelf carbonates. It has been divided into three main structural elements: the Mussel Platform in the east, the central Voluta Trough, and the Crayfish Platform in the west. The basin was initiated at the end of the Jurassic as part of the Bassian rift. Up to 6 km of Lower Cretaceous sediments were deposited prior to breakup at the end of the Early Cretaceous and the onset of sea-floor spreading between Australia and Antarctica.

  6. Martian lake basins and lacustrine plains

    NASA Astrophysics Data System (ADS)

    de Hon, R. A.

    1992-02-01

    A classification of Martian lake basins based on the location of the basin in respect to water sources is proposed. The classes are type 1: valley-head basins; type 2: intravalley basins; type 3: valley-terminal basins; and type 4: isolated basins. Martian lakes are ephemeral features. Many craters and irregular depressions impounded water only until the basins filled and overflowed. Water escaping by spillover rapidly cut crevasses in the downstream side of basins and drained the ponds. Clastic lacustrine sediments collected in the lakes as flowing water lost velocity and turbulence. Evaporitic deposits may be significant in those basins that were not rapidly drained. Sediments deposited in lake basins form smooth, featureless plains. Lacustrine plains are potentially candidate sites for Mars landings and for the search for evidence of ancient life.

  7. Tectonic framework of Turkish sedimentary basins

    SciTech Connect

    Yilmaz, P.O. )

    1988-08-01

    Turkey's exploration potential primarily exists in seven onshore (Southeast Turkey platform, Tauride platform, Pontide platform, East Anatolian platform, Interior, Trace, and Adana) basins and four offshore (Black Sea, Marmara Sea, Aegean Sea, and Mediterranean Sea) regional basins formed during the Mesozoic and Tertiary. The Mesozoic basins are the onshore basins: Southeast Turkey, Tauride, Pontide, East Anatolian, and Interior basins. Due to their common tectonic heritage, the southeast Turkey and Tauride basins have similar source rocks, structural growth, trap size, and structural styles. In the north, another Mesozoic basin, the Pontide platform, has a much more complex history and very little in common with the southerly basins. The Pontide has two distinct parts; the west has Paleozoic continental basement and the east is underlain by island-arc basement of Jurassic age. The plays are in the upper Mesozoic rocks in the west Pontide. The remaining Mesozoic basins of the onshore Interior and East Anatolian basins are poorly known and very complex. Their source, reservoir, and seal are not clearly defined. The basins formed during several orogenic phases in mesozoic and Tertiary. The Cenozoic basins are the onshore Thrace and Adana basins, and all offshore regional basins formed during Miocene extension. Further complicating the onshore basins evolution is the superposition of Cenozoic basins and Mesozoic basins. The Thrace basin in the northwest and Adana basin in the south both originate from Tertiary extension over Tethyan basement and result in a similar source, reservoir, and seal. Local strike-slip movement along the North Anatolian fault modifies the Thrace basin structures, influencing its hydrocarbon potential.

  8. A combined polarizing microscope, XRD, SEM, and specific gravity study of the petrified woods of volcanic origin from the Çamlıdere-Çeltikçi-Güdül fossil forest, in Ankara, Turkey

    NASA Astrophysics Data System (ADS)

    Hatipoğlu, Murat; Türk, Necdet

    2009-03-01

    The fossil forest in the Çamlıdere-Çeltikçi-Güdül region of the province of Ankara in Turkey has a large number of petrified coniferous and oak tree remains. Petrification occurred in volcanic ashes and tuffs with permineralization, and Fe, Mg, Ca and Ni ions played important roles in the substitution of Si for C. However, the petrified wood samples are heterogeneous in colouration, weight, toughness, and durability, despite being obtained from the same source. Those features are very important for end-users because petrified woods, if cut and polished, are used widely as both decorative indoor tiles and gemstone objects, but heterogeneous materials suffer large wastage while they are being worked and used. Chemical analyses, specific gravity measurements, polarizing microscope studies, X-ray diffraction patterns, and scanning electron image evaluations were performed to classify and identify the homogenous material of the petrified woods relating to its physical and mineralogical characteristics. The different characteristics of the petrified wood samples are due to their varying inner structures, which depend on the replacement silica-building phases and their ratios, and silica particle sizes. Thin sections and XRD patterns revealed that petrified woods in the region were silicified by replacement with both chalcedonic quartz components, including chalcedony (length-fast quartz), moganite and orthorhombic-silica (length-slow quartz), and opalline quartz components including opal-CT and opal-C (length-slow quartz). The scanning electron microscope images were shown that the internal structures of the petrified woods consist of mostly submicron-sized (100-800 nm), and partially nano-sized (60-120 nm) silica-building particles. So, the petrified wood samples can be firstly classified into five main-groups based on their colourations and specific gravity values, then, into three sub-groups based on the principal chalcedonic and opalline quartz silica

  9. High to ultrahigh potassic alkaline volcanic belt along the Ankara-Erzincan suture (northern Turkey): new geochemical and Ar-Ar data constraining petrogenesis with implications for the late Cretaceous subduction of the Neotethys Ocean

    NASA Astrophysics Data System (ADS)

    Genc, S. Can; Gulmez, Fatma; Tuysuz, Okan; Karacik, Zekiye; Roden, Michael F.; Zeki Billor, M.; Hames, Willis E.

    2013-04-01

    Remnants of some high- to ultrahigh-K alkaline volcanic rocks crop out as isolated small and discontinuous bodies along the Ankara-Erzincan suture belt in northern Turkey. These rocks are represented by leucite-bearing lavas (LB), basaltic andesites, trachytes, monzonite/syenites) and lamprophyres. Leucite-bearing rocks are small stocks, dikes and lava flows. Pebbles and blocks of the LB are found in the coeval volcanic debris avalanche deposits and volcanoclastic breccias. Leucite-bearing rocks are mainly phonotephrite, tephriphonolite, trachyandesite and basaltic trachyandesites (shoshonite) and have mineral assemblages of lct + cpx + ol + pl + Kfs + mag+ ap. Leucites were almost totally analcimized. Trachytes and monzonite/syenites, which are seen as small stocks and dikes, are characterized by amp + bt + pl + Kfs + spn + ap + opq paragenesis. Lamprophyres are mica-rich melanocratic dikes, and include cpx + mica (phlogopitic) + Kfs + ap + opq. Rarely leucite, olivine and plagioclase are also present. Ar-Ar data reveal that this volcanic activity occurred between 73.6±0.18 and 76.78±0.19 Ma, corresponding to latest Cretaceous. All the samples from the high- and ultrahigh-K volcanic belt are alkaline in nature. Leucite-bearing lavas are characterized by their MgO (2.70-5.81, av. 4.58 wt.%), K2O (0.79-4.81, av. 2.35 wt.%), Na2O (4.86-7.48, av. 3.58 wt.%) and K2O/Na2O (0.13-0.92, av. 0.42 wt.%). The low K2O and K2O/Na2O contents of these rocks are due to extensive analcimization of the leucites. Major oxide contents in lamprophyric rocks are 3.25-7.48 (MgO), 1.35-7.76 (K2O), 1.77-4.00 (Na2O) and 0.31-2.69 (K2O/Na2O). The silica content of these rocks are variable and range from 47.18-50.26 (wt.%) (LB) to 39.14-53.28 (lamprophyres). Based on their major element contents, these rocks are classified as plagioleucitites or ultrapotassic rocks of the active orogenic zones (Foley, 1992). Leucite-bearing rocks, lamprophyres and the trachytes (with their hypabyssal

  10. A Randomized, Double-Blind, Placebo-Controlled Phase II Trial Investigating the Safety and Immunogenicity of Modified Vaccinia Ankara Smallpox Vaccine (MVA-BN®) in 56-80-Year-Old Subjects

    PubMed Central

    Greenberg, Richard N.; Hay, Christine M.; Stapleton, Jack T.; Marbury, Thomas C.; Wagner, Eva; Kreitmeir, Eva; von Krempelhuber, Alfred; Young, Philip; Nichols, Richard; Meyer, Thomas P.; Weigl, Josef; Virgin, Garth; Arndtz-Wiedemann, Nathaly; Chaplin, Paul

    2016-01-01

    Background Modified Vaccinia Ankara MVA-BN® is a live, highly attenuated, viral vaccine under advanced development as a non-replicating smallpox vaccine. In this Phase II trial, the safety and immunogenicity of Modified Vaccinia Ankara MVA-BN® (MVA) was assessed in a 56–80 years old population. Methods MVA with a virus titer of 1 x 108 TCID50/dose was administered via subcutaneous injection to 56–80 year old vaccinia-experienced subjects (N = 120). Subjects received either two injections of MVA (MM group) or one injection of Placebo and one injection of MVA (PM group) four weeks apart. Safety was evaluated by assessment of adverse events (AE), focused physical exams, electrocardiogram recordings and safety laboratories. Solicited AEs consisted of a set of pre-defined expected local reactions (erythema, swelling, pain, pruritus, and induration) and systemic symptoms (body temperature, headache, myalgia, nausea and fatigue) and were recorded on a memory aid for an 8-day period following each injection. The immunogenicity of the vaccine was evaluated in terms of humoral immune responses measured with a vaccinia-specific enzyme-linked immunosorbent assay (ELISA) and a plaque reduction neutralization test (PRNT) before and at different time points after vaccination. Results Vaccinations were well tolerated by all subjects. No serious adverse event related to MVA and no case of myopericarditis was reported. The overall incidence of unsolicited AEs was similar in both groups. For both groups immunogenicity responses two weeks after the final vaccination (i.e. Visit 4) were as follows: Seroconversion (SC) rates (doubling of titers from baseline) in vaccine specific antibody titers measured by ELISA were 83.3% in Group MM and 82.8% in Group PM (difference 0.6% with 95% exact CI [-13.8%, 15.0%]), and 90.0% for Group MM and 77.6% for Group PM measured by PRNT (difference 12.4% with 95% CI of [-1.1%, 27.0%]). Geometric mean titers (GMT) measured by ELISA two weeks after

  11. Provenance and basin evolution, Zhada basin, southwestern Tibet

    NASA Astrophysics Data System (ADS)

    Saylor, J.; Decelles, P.; Gehrels, G.; Kapp, P.

    2007-12-01

    The Zhada basin is a late Miocene - Pliocene intermontane basin situated at high elevations in the Himalayan hinterland. The fluvial and lacustrine sediments of the Zhada formation are undeformed and sit in angular unconformity above the deformed Tethyan Sedimentary Sequence (TSS). The basin sits just south of the Indus suture in a structural position occupied elsewhere in the Himalayan orogen by some of the highest mountains on earth, including Everest. The occurrence of a basin at this location demands explanation. Currently, the Sutlej River flows parallel to the structural grain of the Himalaya, westward through the basin, towards the Leo Pargil (Qusum) range. Near the range front it takes a sharp southward turn, cuts across the structural grain of the Himalaya and out into the Gangetic foreland. Palaeocurrent indicators in the lower part of the Zhada formation show that the basin originated as a northwest flowing axial river. Palaeocurrent indicators are consistently northwest oriented, even to within to within 10 km of the Leo Pargil range front in the north-western end of the basin. This implies that at the onset of sedimentation in Zhada basin the Leo Pargil range was not a barrier as it is today. In the upper part of the Zhada formation, palaeocurrent indicators are generally directed towards the centre of the basin. In the central and southern portions of the basin this indicates a transition from an axial, northwest flowing river to prograding fluvial and alluvial fans. However, in the north-western part of the basin the change between lower and upper Zhada formation involves a complete drainage reversal. This change in palaeocurrent orientation is also reflected in the detrital zircon signal from basin sediments. Low in the Zhada formation the detrital zircon signal is dominated by zircons from the Kailash (Gangdese) batholith (or associated extrusives, see below). However, higher in the sections, a local source, either from the TSS or the core of the

  12. Towards a universal vaccine for avian influenza: protective efficacy of modified Vaccinia virus Ankara and Adenovirus vaccines expressing conserved influenza antigens in chickens challenged with low pathogenic avian influenza virus.

    PubMed

    Boyd, Amy C; Ruiz-Hernandez, Raul; Peroval, Marylene Y; Carson, Connor; Balkissoon, Devanand; Staines, Karen; Turner, Alison V; Hill, Adrian V S; Gilbert, Sarah C; Butter, Colin

    2013-01-11

    Current vaccines targeting surface proteins can drive antigenic variation resulting either in the emergence of more highly pathogenic viruses or of antigenically distinct viruses that escape control by vaccination and thereby persist in the host population. Influenza vaccines typically target the highly mutable surface proteins and do not provide protection against heterologous challenge. Vaccines which induce immune responses against conserved influenza epitopes may confer protection against heterologous challenge. We report here the results of vaccination with recombinant modified Vaccinia virus Ankara (MVA) and Adenovirus (Ad) expressing a fusion construct of nucleoprotein and matrix protein (NP+M1). Prime and boost vaccination regimes were trialled in different ages of chicken and were found to be safe and immunogenic. Interferon-γ (IFN-γ) ELISpot was used to assess the cellular immune response post secondary vaccination. In ovo Ad prime followed by a 4 week post hatch MVA boost was identified as the most immunogenic regime in one outbred and two inbred lines of chicken. Following vaccination, one inbred line (C15I) was challenged with low pathogenic avian influenza (LPAI) H7N7 (A/Turkey/England/1977). Birds receiving a primary vaccination with Ad-NP+M1 and a secondary vaccination with MVA-NP+M1 exhibited reduced cloacal shedding as measured by plaque assay at 7 days post infection compared with birds vaccinated with recombinant viruses containing irrelevant antigen. This preliminary indication of efficacy demonstrates proof of concept in birds; induction of T cell responses in chickens by viral vectors containing internal influenza antigens may be a productive strategy for the development of vaccines to induce heterologous protection against influenza in poultry. PMID:23200938

  13. Antiserum from mice vaccinated with modified vaccinia Ankara virus expressing African horse sickness virus (AHSV) VP2 provides protection when it is administered 48h before, or 48h after challenge.

    PubMed

    Calvo-Pinilla, Eva; de la Poza, Francisco; Gubbins, Simon; Mertens, Peter Paul Clement; Ortego, Javier; Castillo-Olivares, Javier

    2015-04-01

    Previous studies show that a recombinant modified vaccinia Ankara (MVA) virus expressing VP2 of AHSV serotype 4 (MVA-VP2) induced virus neutralising antibodies in horses and protected interferon alpha receptor gene knock-out mice (IFNAR -/-) against challenge. Follow up experiments indicated that passive transfer of antiserum, from MVA-VP2 immune donors to recipient mice 1h before challenge, conferred complete clinical protection and significantly reduced viraemia. These studies have been extended to determine the protective effect of MVA-VP2 vaccine-induced antiserum, when administered 48h before, or 48h after challenge. In addition, passive transfer of splenocytes was undertaken to assess if they confer any degree of immunity to immunologically naïve recipient mice. Thus, antisera and splenocytes were collected from groups of mice that had been vaccinated with MVA-VP2, or wild type MVA (MVA-wt), for passive immunisation of recipient mice. The latter were subsequently challenged with AHSV-4 (together with appropriate vaccinated or unvaccinated control animals) and protection was assessed by comparing clinical signs, lethality and viraemia between treated and control groups. All antiserum recipients showed high protection against disease (100% survival rates even in mice that were immunised 48h after challenge) and statistically significant reduction or viraemia in comparison with the control groups. The mouse group receiving splenocytes from MVA-VP2 vaccinates, showed only a 40% survival rate, with a small reduction in viraemia, compared to those mice that had received splenocytes from MVA-wt vaccinates. These results confirm the primarily humoral nature of protective immunity conferred by MVA-VP2 vaccination and show the potential of administering MVA-VP2 specific antiserum as an emergency treatment for AHSV. PMID:25643968

  14. Vaccination of renal cell cancer patients with modified vaccinia Ankara delivering the tumor antigen 5T4 (TroVax) alone or administered in combination with interferon-alpha (IFN-alpha): a phase 2 trial.

    PubMed

    Amato, Robert J; Shingler, William; Goonewardena, Madusha; de Belin, Jackie; Naylor, Stuart; Jac, Jaroslaw; Willis, James; Saxena, Somyata; Hernandez-McClain, Joan; Harrop, Richard

    2009-09-01

    Attenuated vaccinia virus, modified vaccinia Ankara (MVA) has been engineered to deliver the tumor antigen 5T4 (TroVax). MVA-5T4 has been evaluated in an open-label phase 2 trial in metastatic renal cell cancer patients in which the vaccine was administered alone or in combination with interferon-alpha-2b (IFN-alpha). The safety, immunologic, and clinical efficacy of MVA-5T4 with or without IFN-alpha was determined. Twenty-eight patients with metastatic renal cell cancer were treated with MVA-5T4 alone (13) or plus IFN-alpha (15). The 5T4-specific cellular and humoral responses were monitored throughout the study. Clinical responses were assessed by measuring changes in tumor burden by computed tomography or magnetic resonance imaging scan. MVA-5T4 was well tolerated with no serious adverse event attributed to vaccination. Of 23 intent-to-treat patients tested for immune responses postvaccination, 22 (96%) mounted 5T4-specific antibody and/or cellular responses. One patient treated with MVA-5T4 plus IFN-alpha showed a partial response for >7 months, whereas an additional 14 patients (7 receiving MVA-5T4 plus IFN and 7 receiving MVA-5T4 alone) showed periods of disease stabilization ranging from 1.73 to 9.60 months. Median progression free survival and overall survival for all intent-to-treat patients was 3.8 months (range: 1 to 11.47 mo) and 12.1 months (range: 1 to 27 mo), respectively. MVA-5T4 administered alone or in combination with IFN-alpha was well tolerated in all patients. Despite the high frequency of 5T4-specific immune responses, it is not possible to conclude that patients are receiving clinical benefit. The results are encouraging and warrant further investigation. PMID:19561532

  15. Induction of Noxa-Mediated Apoptosis by Modified Vaccinia Virus Ankara Depends on Viral Recognition by Cytosolic Helicases, Leading to IRF-3/IFN-β-Dependent Induction of Pro-Apoptotic Noxa

    PubMed Central

    Eitz Ferrer, Pedro; Potthoff, Stephanie; Kirschnek, Susanne; Gasteiger, Georg; Kastenmüller, Wolfgang; Ludwig, Holger; Paschen, Stefan A.; Villunger, Andreas; Sutter, Gerd; Drexler, Ingo; Häcker, Georg

    2011-01-01

    Viral infection is a stimulus for apoptosis, and in order to sustain viral replication many viruses are known to carry genes encoding apoptosis inhibitors. F1L, encoded by the orthopoxvirus modified vaccinia virus Ankara (MVA) has a Bcl-2-like structure. An MVA mutant lacking F1L (MVAΔF1L) induces apoptosis, indicating that MVA infection activates and F1L functions to inhibit the apoptotic pathway. In this study we investigated the events leading to apoptosis upon infection by MVAΔF1L. Apoptosis largely proceeded through the pro-apoptotic Bcl-2 family protein Bak with some contribution from Bax. Of the family of pro-apoptotic BH3-only proteins, only the loss of Noxa provided substantial protection, while the loss of Bim had a minor effect. In mice, MVA preferentially infected macrophages and DCs in vivo. In both cell types wt MVA induced apoptosis albeit more weakly than MVAΔF1L. The loss of Noxa had a significant protective effect in macrophages, DC and primary lymphocytes, and the combined loss of Bim and Noxa provided strong protection. Noxa protein was induced during infection, and the induction of Noxa protein and apoptosis induction required transcription factor IRF3 and type I interferon signalling. We further observed that helicases RIG-I and MDA5 and their signalling adapter MAVS contribute to Noxa induction and apoptosis in response to MVA infection. RNA isolated from MVA-infected cells induced Noxa expression and apoptosis when transfected in the absence of viral infection. We thus here describe a pathway leading from the detection of viral RNA during MVA infection by the cytosolic helicase-pathway, to the up-regulation of Noxa and apoptosis via IRF3 and type I IFN signalling. PMID:21698224

  16. Deformation History of the Haymana Basin: Structural Records of Closure-Collision and Subsequent Convergence (Indentation) Events at the North-Central Neotethys (Central Anatolia, Turkey)

    NASA Astrophysics Data System (ADS)

    Gülyüz, Erhan; Özkaptan, Murat; Kaymakcı, Nuretdin

    2016-04-01

    Gondwana- (Tauride Platfrom and Kırşehir Block) and Eurasia (Pontides) - derived continental blocks bound the Haymana basin, in the south and north, respectively. Boundaries between these blocks are signed by İzmir-Ankara-Erzincan and debatable Intra-Tauride Suture zones which are straddled by the Haymana Basin in the region. In this regard, deformation recorded in the upper Cretaceous to middle Eocene deposits of the basin is mainly controlled by the relative movements of these blocks. Therefore, understanding the structural evolution of the Haymana Basin in a spatio-temporal concept is crucial to shed some light on some debatable issues such as ; (1) timing of late stage subduction histories of various branches of Neotethys and subsequent collision events, (2) effects of post-collisional tectonic activity in the Haymana region. Fault kinematic analyses (based on 623 fault-slip data from 73 stations) indicate that the basin was subjected to initially N-S to NNE-SSW extension until middle Paleocene and then N-S- to NNE-SSW- directed continuous compression and coeval E-W to ESE-WNW extension up to middle Miocene. These different deformation phases correspond to the fore-arc (closure) and foreland (collision and further convergence) stages of the basin. Additionally, fold analyses (based on 1017 bedding attitudes) and structural mapping studies show that development of folds and major faults are coeval and they can be explained by principle stress orientations of the second deformation phase. The Haymana basin is, based on the trends of E-W- and WNW-ESE- directed structures at the south-eastern and the north-western parts of the basin, respectively, divided into two structural segments. The balanced cross-sections also indicate ~4% and ~25% shortening at the north-western and south-eastern segments, respectively. The differences in amounts of shortenings are explained by reduce in effectiveness zone of basin-bounding thrust faults towards west. On the other hand

  17. 77 FR 45653 - Yakima River Basin Conservation Advisory Group; Yakima River Basin Water Enhancement Project...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-01

    ... Bureau of Reclamation Yakima River Basin Conservation Advisory Group; Yakima River Basin Water... on the structure, implementation, and oversight of the Yakima River Basin Water Conservation Program... of the Water Conservation Program, including the applicable water conservation guidelines of...

  18. Flexural analysis of two broken foreland basins; Late Cenozoic Bermejo basin and Early Cenozoic Green River basin

    SciTech Connect

    Flemings, P.B.; Jordan, T.E.; Reynolds, S.

    1986-05-01

    Lithospheric flexure that generates basin in a broke foreland setting (e.g., the Laramide foreland of Wyoming) is a three-dimensional system related to shortening along basin-bounding faults. The authors modeled the elastic flexure in three dimensions for two broken foreland basins: the early Cenozoic Green River basin and the analogous late Cenozoic Bermejo basin of Argentina. Each basin is located between a thrust belt and a reverse-fault-bounded basement uplift. Both basins are asymmetric toward the basement uplifts and have a central basement high: the Rock Springs uplift and the Pie de Palo uplift, respectively. The model applies loads generated by crustal thickening to an elastic lithosphere overlying a fluid mantle. Using the loading conditions of the Bermejo basin based on topography, limited drilling, and reflection and earthquake seismology, the model predicts the current Bermejo basin geometry. Similarly, flexure under the loading conditions in the Green River basin, which are constrained by stratigraphy, well logs, and seismic profiling and summed for Late Cretaceous (Lance Formation) through Eocene (Wasatch Formation), successfully models the observed geometry of the pre-Lance surface. Basin depocenters (> 4 km for the Green River basin; > 7 km for the Bermejo basin) and central uplifts are predicted to result from constructive interference of the nonparallel applied loads. Their Bermejo model implies that instantaneous basin geometry is successfully modeled by crustal loading, whereas the Green River basin analysis suggests that basin evolution can be modeled over large time steps (e.g., 20 Ma). This result links instantaneous basin geometry to overall basin evolution and is a first step in predicting stratigraphic development.

  19. Viscoelastic Relaxation of Lunar Basins

    NASA Astrophysics Data System (ADS)

    Mohit, P. S.; Phillips, R. J.

    2004-12-01

    The large lunar impact basins provide a unique glimpse into early lunar history. Here we investigate the possibility that the relief of the oldest lunar basins (with the exception of South-Pole Aitken) has decayed through viscous relaxation. We identify nine ancient multi-ring basins with very low relief and low-amplitude Bouguer and free-air gravity anomalies. The characteristics of these basins are consistent with either 1) relaxation of topographic relief by ductile flow (e.g. Solomon et al., 1982) or 2) obliteration of basin topography during crater collapse immediately following impact. Both scenarios require that the basins formed early in lunar history, when the Moon was hot. The latter possibility appears to be unlikely due to the great topographic relief of South Pole-Aitken basin (SPA), the largest and oldest impact basin on the Moon (with the possible exception of the putative Procellarum basin; Wilhelms, 1987). On the other hand, the thin crust beneath SPA may not have allowed ductile flow in its lower portions, even for a hot Moon, implying that a thicker crust is required beneath other ancient basins for the hypothesis of viscous relaxation to be tenable. Using a semi-analytic, self-gravitating viscoelastic model, we investigate the conditions necessary to produce viscous relaxation of lunar basins. We model topographic relaxation for a crustal thickness of 30 km, using a dry diabase flow law for the crust and dry olivine for the mantle. We find that the minimum temperature at the base of the crust (Tb) permitting nearly complete relaxation of topography by ductile flow on a timescale < 108 yrs is 1400 K, corresponding to a heat flow of 55mW/m2, into the crust. Ductile flow in the lower crust becomes increasingly difficult as the crustal thickness decreases. The crust beneath SPA, thinned by the impact, is only 15-20 km thick and would require Tb ≥ 1550 K for relaxation to occur. The fact that SPA has maintained high-amplitude relief suggests that

  20. Paleothermometry of the Sydney Basin

    SciTech Connect

    Middleton, M.F.; Schmidt, P.W.

    1982-07-10

    Evidence from overprinting of magnetizations of Late Permian and Mesozoic rocks and from the rank of Permian coals and Mesozoic phytoclasts (coal particles) suggests that surface rocks in the Sydney Basin, eastern Australia, have been raised to temperatures of the order of 200 /sup 0/C or higher. As vitrinite reflectance, an index of coal rank or coalification, is postulated to vary predictably with temperature and time, estimates of the paleotemperatures in the Sydney Basin based on observed vitrinite reflectance measurements can be made in conjunction with reasonable assumptions about the tectonic and thermal histories of the basin. These estimates give maximum paleotemperatures of present day surface rocks in the range 60--249 /sup 0/C, depending on factors such as location in the basin, the thickness of the sediment eroded, and the maximum paleogeothermal gradient. Higher coal rank and, consequently, larger eroded thicknesses and paleogeothermal gradients occur along the eastern edge of the basin and may be related to seafloor spreading in the Tasman Sea on the basin's eastern margin. A theory of thermal activation of magnetization entailing the dependence of magnetic viscosity on the size distribution of the magnetic grains is used to obtain an independent estimate of the maximum paleotemperatures in the Sydney Basin. This estimate places the maximum paleotemperature in the range 250--300 /sup 0/C along the coastal region. Both coalification and thermal activation of magnetization models provide strong evidence of elevated paleotemperatures, which in places exceed 200 /sup 0/C, and the loss of sediment thicknesses in excess of 1 km due to erosion.

  1. Basin Overflow Floods on Mars

    NASA Astrophysics Data System (ADS)

    Irwin, R. P.

    2006-12-01

    On Earth, the most intense recognized historical and paleofloods have been ice dambursts or overflows of large basins, often initiated by abundant runoff or meltwater from the contributing watersheds. Many impact craters and other basins also overflowed in the Martian cratered highlands, and some of their incised outlet valleys similarly record evidence of erosive floods. Otherwise, the commonly small, enclosed watersheds on Mars contain poorly developed valley networks and relatively simple depositional landforms, which record little evidence of intense (by terrestrial standards) meteorological floods. For these reasons, basin overflows may have been disproportionately important mechanisms for incision of large valleys on Mars. Many of the Martian outflow channels head in topographic settings that favored ponding, including large canyons, impact or intercrater basins, chaotic terrain basins, and grabens. This topography may have accumulated somewhat slower groundwater discharges from the subsurface to support peak channel discharges of 106-108 m3/s. To yield a discharge of 106, 107, and 108 m3/s from a dam failure with a width/depth ratio of 5, the model predicts that a breach of ~100, 250, and 640 m, respectively, must form rapidly with respect to the decline of lake level. Terrestrial damburst floods have not exceeded ~106 m3/s for earthen dams and ~107 m3/s for ice dams, but brecciation of the Martian surface by impact cratering may have allowed larger damburst failures, whereas solid bedrock was exposed at shallower depths in the terrestrial examples. Moreover, many of the Martian basins were much larger than enclosed continental basins on Earth, so long-lived overflows may have facilitated entrenchment of deeper channels. Some large, mid-latitude basins overflowed to carve Ma'adim Vallis and the Uzboi-Ladon-Margaritifer Valles system, which are similar in scale to the terrestrial Grand Canyon but record much larger formative discharges. Models of damburst

  2. Hydrogeologic framework of sedimentary deposits in six structural basins, Yakima River basin, Washington

    USGS Publications Warehouse

    Jones, M.A.; Vaccaro, J.J.; Watkins, A.M.

    2006-01-01

    The hydrogeologic framework was delineated for the ground-water flow system of the sedimentary deposits in six structural basins in the Yakima River Basin, Washington. The six basins delineated, from north to south are: Roslyn, Kittitas, Selah, Yakima, Toppenish, and Benton. Extent and thicknesses of the hydrogeologic units and total basin sediment thickness were mapped for each basin. Interpretations were based on information from about 4,700 well records using geochemical, geophysical, geologist's or driller's logs, and from the surficial geology and previously constructed maps and well interpretations. The sedimentary deposits were thickest in the Kittitas Basin reaching a depth of greater than 2,000 ft, followed by successively thinner sedimentary deposits in the Selah basin with about 1,900 ft, Yakima Basin with about 1,800 ft, Toppenish Basin with about 1,200 ft, Benton basin with about 870 ft and Roslyn Basin with about 700 ft.

  3. Stormwater detention basin sediment removal

    SciTech Connect

    Gross, W.E.

    1995-12-31

    In the past, stormwater runoff from landfills has been treated mainly by focusing on reducing the peak storm discharge rates so as not to hydraulically impact downstream subsheds. However, with the advent of stricter water quality regulations based on the Federal Clean Water Act, and the related NPDES and SPDES programs, landfill owners and operators are now legally responsible for the water quality of the runoff once it leaves the landfill site. At the Fresh Kills Landfill in New York City, the world`s largest covering over 2000 acres, landfilling activities have been underway since 1945. With the main objective at all older landfill sites having focused on maximizing the available landfill footprint in order to obtain the most possible airspace volume, consideration was not given for the future siting of stormwater basin structures. Therefore, when SCS Engineers began developing the first comprehensive stormwater management plan for the site, the primary task was to locate potential sites for all the stormwater basins in order to comply with state regulations for peak stormwater runoff control. The basins were mostly constructed where space allowed, and were sized to be as large as possible given siting and subshed area constraints. Seventeen stormwater basins have now been designed and are being constructed to control the peak stormwater runoff for the 25-year, 24-hour storm as required by New York State. As an additional factor of safety, the basins were also designed for controlled discharge of the 100-year, 24 hour storm.

  4. Water Accounting from Ungauged Basins

    NASA Astrophysics Data System (ADS)

    Bastiaanssen, W. G.; Savenije, H.

    2014-12-01

    Water scarcity is increasing globally. This requires a more accurate management of the water resources at river basin scale and understanding of withdrawals and return flows; both naturally and man-induced. Many basins and their tributaries are, however, ungauged or poorly gauged. This hampers sound planning and monitoring processes. While certain countries have developed clear guidelines and policies on data observatories and data sharing, other countries and their basin organization still have to start on developing data democracies. Water accounting quantifies flows, fluxes, stocks and consumptive use pertaining to every land use class in a river basin. The objective is to derive a knowledge base with certain minimum information that facilitates decision making. Water Accounting Plus (WA+) is a new method for water resources assessment reporting (www.wateraccounting.org). While the PUB framework has yielded several deterministic models for flow prediction, WA+ utilizes remote sensing data of rainfall, evaporation (including soil, water, vegetation and interception evaporation), soil moisture, water levels, land use and biomass production. Examples will be demonstrated that show how remote sensing and hydrological models can be smartly integrated for generating all the required input data into WA+. A standard water accounting system for all basins in the world - with a special emphasis on data scarce regions - is under development. First results of using remote sensing measurements and hydrological modeling as an alternative to expensive field data sets, will be presented and discussed.

  5. Inversion of Extensional Sedimentary Basins

    NASA Astrophysics Data System (ADS)

    Buiter, Susanne J. H.; Pfiffner, O. Adrian

    The evolution of extensional sedimentary basins is governed by the surrounding stress field and can, therefore, be expected to be highly sensitive to variations in these stresses. Important changes in basin geometry are to be expected in the case of an even short-lived reversal from extension to compression. We investigate the evolu- tion of fold and thrust structures which form in compression after extension, when basin forming processes have come to a complete stop. To this purpose, we use a two- dimensional, viscoplastic model and start our experiments from a pre-existing exten- sional geometry. We illustrate the sensitivity of the evolving structures to inherited extensional geometry, sedimentary and erosional processes, and material properties. One series of our model experiments involves the upper- to middle crust only in order to achieve a high detail in the basin area. We find that our results agree with examples from nature and analogue studies in, among others, the uplift and rotation of syn-rift sediments, the propagation of shear zones into the post-rift sediments and, in specific cases, the development of back-thrusts or basement short-cut faults. We test the out- come of these models by performing a second series of model simulations in which basins on a continental margin are inverted through their progressive approach of a subduction zone. These latter models are on the scale of the whole upper mantle.

  6. Testing for Basins of Wada

    PubMed Central

    Daza, Alvar; Wagemakers, Alexandre; Sanjuán, Miguel A. F.; Yorke, James A.

    2015-01-01

    Nonlinear systems often give rise to fractal boundaries in phase space, hindering predictability. When a single boundary separates three or more different basins of attraction, we say that the set of basins has theWada property and initial conditions near that boundary are even more unpredictable. Many physical systems of interest with this topological property appear in the literature. However, so far the only approach to study Wada basins has been restricted to two-dimensional phase spaces. Here we report a simple algorithm whose purpose is to look for the Wada property in a given dynamical system. Another benefit of this procedure is the possibility to classify and study intermediate situations known as partially Wada boundaries. PMID:26553444

  7. Oil in the Malvinas Basin

    SciTech Connect

    Galeazzi, J.S.

    1996-08-01

    The Malvinas Basin is petroliferous. The main source rocks are Late Jurassic and Early Cretaceous outer shelf to basinal shales known as the Pampa Rincon and Lower Inoceramus formations. Main reservoirs are fluvial and shallow-marine sandstones of the coeval Springhill Formation. On the western flank of the basin, 17 wells drilled the Cenozoic and Mesozoic column. Three of these wells discovered hydrocarbons within the Springhill Formation, and one discovered oil in Early Paleogene sandstones. Additionally, some wells recorded shows at different levels within the stratigraphic succession. A detailed overview of the drilled portion of the basin permitted the construction of a sequence stratigraphic framework, and yielded clues on a complex history of deformation. Interpretation of facies and stratal stacking and termination patterns determined that the main reservoir and source rocks were deposited in a ramp-style depositional setting. They represent the lower transgressive phase of a Late Jurassic to Early Cretaceous megasequence deposited during the early sag stage of the basin. Alternative reservoirs to the Springhill sandstones include early Paleogene glauconitic sandstones and carbonates, and Miocene deep-water turbidites. Structural trap styles include normal fault features of Jurassic to Early Cretaceous age, and compressional and inverted positive structures due to Neogene compression. Possible combination and stratigraphic traps include: little tested onlap pinchout of Late Jurassic to Early Cretaceous and Paleogene sandstones and untested erosionally truncated Paleogene sandstones; Early Paleogene carbonate buildups and Miocene deep-water turbidite mounds. The understanding of the geology of the western Malvinas Basin is the key to success of exploration in the huge frontier surrounding areas.

  8. H-Area Seepage Basins

    SciTech Connect

    Stejskal, G.

    1990-12-01

    During the third quarter of 1990 the wells which make up the H-Area Seepage Basins (H-HWMF) monitoring network were sampled. Laboratory analyses were performed to measure levels of hazardous constituents, indicator parameters, tritium, nonvolatile beta, and gross alpha. A Gas Chromatograph Mass Spectrometer (GCMS) scan was performed on all wells sampled to determine any hazardous organic constituents present in the groundwater. The primary contaminants observed at wells monitoring the H-Area Seepage Basins are tritium, nitrate, mercury, gross alpha, nonvolatile beta, trichloroethylene (TCE), tetrachloroethylene, lead, cadmium, arsenic, and total radium.

  9. Searching for Nectaris Basin Impact Melt Rocks

    NASA Astrophysics Data System (ADS)

    Cohen, B. A.

    2015-07-01

    Because Nectaris Basin is a key stratigraphic marker for lunar bombardment, we are conducting an effort to identify Nectaris basin impact-melt rocks, to model their emplacement, and to examine sites where Nectaris impact melt is abundant.

  10. Origin of the earth's ocean basins

    NASA Technical Reports Server (NTRS)

    Frey, H.

    1977-01-01

    The earth's original ocean basins are proposed to be mare-type basins produced 4 billion y.a. by the flux of asteroid-sized objects responsible for the lunar mare basins. Scaling upward from the observed number of lunar basins for the greater capture cross-section and impact velocity of the earth indicates that at least 50% of an original global crust would have been converted to basin topography. These basins were flooded by basaltic liquids in times short compared to the isostatic adjustment time for the basin. The modern crustal dichotomy (60% oceanic, 40% continental crust) was established early in the history of the earth, making possible the later onset of plate tectonic processes. These later processes have subsequently reworked, in several cycles, principally the oceanic parts of the earth's crust, changing the configuration of the continents in the process. Ocean basins (and oceans themselves) may be rare occurrences on planets in other star systems.

  11. Origin of the earth's ocean basins

    NASA Technical Reports Server (NTRS)

    Frex, H.

    1977-01-01

    The earth's original ocean basins were mare-type basins produced 4 billion years ago by the flux of asteroid-sized objects responsible for the lunar mare basins. Scaling upwards from the observed number of lunar basins for the greater capture cross-section and impact velocity of the Earth indicates that at least 50 percent of an original global crust would have been converted to basin topography. These basins were flooded by basaltic liquids in times short compared to the isostatic adjustment time for the basin. The modern crustal dichotomy (60 percent oceanic, 40 percent continental crust) was established early in the history of the earth, making possible the later onset of plate tectonic processes. These later processes have subsequently reworked, in several cycles, principally the oceanic parts of the earth's crust, changing the configuration of the continents in the process. Ocean basins (and oceans themselves) may be rare occurrences on planets in other star systems.

  12. Caribbean basin framework, 4: Maracaibo basin, northwestern Venezuela

    SciTech Connect

    Lugo, J. )

    1991-03-01

    The Maracaibo basin is presently located in a topographic depression on the Maracaibo block, a triangular, fault-bounded block within the Caribbean-South America plate boundary of northwestern Venezuela. Intense oil exploration over the last 50 years has produced a large amount of seismic and well data that can be used to constrain four Jurassic to Recent tectonic and depositional events that affected the region: (1). Late Jurassic rift phase and subsidence along normal faults striking north-northeast across the floor of the basin; (2) Cretaceous to early Eocene subsidence recorded by shallow to deep marine carbonate and clastic rocks that thicken from south to north and completely cover Permian rocks of the Merida arch; (3) Eocene folding, thrusting, and initial reactivation of Jurassic normal faults as convergent strike-slip and reverse faults. Eocene clastic sediments are thickest in a narrow northwest-trending foredeep on the northeastern margin of the basin; (4) Late Miocene to Recent northwest-southeast convergence is marked by continued reactivation of Jurassic normal faults as reverse and left-lateral strike-slip faults, uplift of mountain ranges bordering the basin, and deposition of up to 10 km of clastic sediment.

  13. Rapid Expansion of CD8+ T Cells in Wild-Type and Type I Interferon Receptor-Deficient Mice Correlates with Protection after Low-Dose Emergency Immunization with Modified Vaccinia Virus Ankara

    PubMed Central

    Volz, Asisa; Langenmayer, Martin; Jany, Sylvia; Kalinke, Ulrich

    2014-01-01

    ABSTRACT Immunization with modified vaccinia virus Ankara (MVA) can rapidly protect mice against lethal ectromelia virus (ECTV) infection, serving as an experimental model for severe systemic infections. Importantly, this early protective capacity of MVA vaccination completely depends on virus-specific cytotoxic CD8+ T cell responses. We used MVA vaccination in the mousepox challenge model using ECTV infection to investigate the previously unknown factors required to elicit rapid protective T cell immunity in normal C57BL/6 mice and in mice lacking the interferon alpha/beta receptor (IFNAR−/−). We found a minimal dose of 105 PFU of MVA vaccine fully sufficient to allow robust protection against lethal mousepox, as assessed by the absence of disease symptoms and failure to detect ECTV in organs from vaccinated animals. Moreover, MVA immunization at low dosage also protected IFNAR−/− mice, indicating efficient activation of cellular immunity even in the absence of type I interferon signaling. When monitoring for virus-specific CD8+ T cell responses in mice vaccinated with the minimal protective dose of MVA, we found significantly enhanced levels of antigen-specific T cells in animals that were MVA vaccinated and ECTV challenged compared to mice that were only vaccinated. The initial priming of naive CD8+ T cells by MVA immunization appears to be highly efficient and, even at low doses, mediates a rapid in vivo burst of pathogen-specific T cells upon challenge. Our findings define striking requirements for protective emergency immunization against severe systemic infections with orthopoxviruses. IMPORTANCE We demonstrate that single-shot low-dose immunizations with vaccinia virus MVA can rapidly induce T cell-mediated protective immunity against lethal orthopoxvirus infections. Our data provide new evidence for an efficient protective capacity of vaccination with replication-deficient MVA. These data are of important practical relevance for public health, as

  14. Safety and Tolerability of Conserved Region Vaccines Vectored by Plasmid DNA, Simian Adenovirus and Modified Vaccinia Virus Ankara Administered to Human Immunodeficiency Virus Type 1-Uninfected Adults in a Randomized, Single-Blind Phase I Trial

    PubMed Central

    Hayton, Emma-Jo; Rose, Annie; Ibrahimsa, Umar; Del Sorbo, Mariarosaria; Capone, Stefania; Crook, Alison; Black, Antony P.; Dorrell, Lucy; Hanke, Tomáš

    2014-01-01

    Trial Design HIV-1 vaccine development has advanced slowly due to viral antigenic diversity, poor immunogenicity and recently, safety concerns associated with human adenovirus serotype-5 vectors. To tackle HIV-1 variation, we designed a unique T-cell immunogen HIVconsv from functionally conserved regions of the HIV-1 proteome, which were presented to the immune system using a heterologous prime-boost combination of plasmid DNA, a non-replicating simian (chimpanzee) adenovirus ChAdV-63 and a non-replicating poxvirus, modified vaccinia virus Ankara. A block-randomized, single-blind, placebo-controlled phase I trial HIV-CORE 002 administered for the first time candidate HIV-1- vaccines or placebo to 32 healthy HIV-1/2-uninfected adults in Oxford, UK and elicited high frequencies of HIV-1-specific T cells capable of inhibiting HIV-1 replication in vitro. Here, detail safety and tolerability of these vaccines are reported. Methods Local and systemic reactogenicity data were collected using structured interviews and study-specific diary cards. Data on all other adverse events were collected using open questions. Serum neutralizing antibody titres to ChAdV-63 were determined before and after vaccination. Results Two volunteers withdrew for vaccine-unrelated reasons. No vaccine-related serious adverse events or reactions occurred during 190 person-months of follow-up. Local and systemic events after vaccination occurred in 27/32 individuals and most were mild (severity grade 1) and predominantly transient (<48 hours). Myalgia and flu-like symptoms were more strongly associated with MVA than ChAdV63 or DNA vectors and more common in vaccine recipients than in placebo. There were no intercurrent HIV-1 infections during follow-up. 2/24 volunteers had low ChAdV-63-neutralizing titres at baseline and 7 increased their titres to over 200 with a median (range) of 633 (231-1533) post-vaccination, which is of no safety concern. Conclusions These data demonstrate safety and good

  15. 33 CFR 401.48 - Turning basins.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 3 2011-07-01 2011-07-01 false Turning basins. 401.48 Section... TRANSPORTATION SEAWAY REGULATIONS AND RULES Regulations Seaway Navigation § 401.48 Turning basins. No vessel... the locations set out in the table to this section. Table 1. South Shore Canal: (a) Turning Basin...

  16. 33 CFR 401.48 - Turning basins.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Turning basins. 401.48 Section... TRANSPORTATION SEAWAY REGULATIONS AND RULES Regulations Seaway Navigation § 401.48 Turning basins. No vessel... the locations set out in the table to this section. Table 1. South Shore Canal: (a) Turning Basin...

  17. Supplementary information on K-Basin sludges

    SciTech Connect

    MAKENAS, B.J.

    1999-03-15

    Three previous documents in this series have been published covering the analysis of: K East Basin Floor and Pit Sludge, K East Basin Canister Sludge, and K West Basin Canister Sludge. Since their publication, additional data have been acquired and analyses performed. It is the purpose of this volume to summarize the additional insights gained in the interim time period.

  18. Evolution of the Congo Basin

    NASA Astrophysics Data System (ADS)

    Glasmacher, U. A.; Bauer, F. U.; Kollenz, S.; Delvaux, D.

    2012-04-01

    The Congo Basin is one of the largest basins in the World with very little knowledge on the geological evolution as well as the oil and gas potential. In the past, oil seeps are recorded in the central part of the basin. Four sides in the Congo basin have been drilled so far. The cores of the two drill sides Dekese and Samba are located at the Musée royal de l'Afrique Centrale, Belgium. In a reconnaissance survey, we sampled both drill cores in a nearly even spacing of ~ 150 m covering the whole stratigraphy from Albian to Proterozoic. The red and green to grey sandstone samples were prepared by usual heavy minerals separation technique. Most of the samples revealed enough apatite and zircon grains for the two thermochronometric techniques fission track and (U-Th-Sm)/He. The time-temperature (t-T) evolution for the two drill locations were modelled by using the determined thermochronological data within the software code HeFTy. We tested various geological evolutionary constrains. Both techniques provide us information on the thermal and exhumation of the possible source area and on the drill location by themselves.

  19. Tectonic evolution and oil and gas of Tarim basin

    NASA Astrophysics Data System (ADS)

    Yuzhu, Kang; Zhihong, Kang

    According to the new results achieved in the past ten years and more, using mobilism and the theory of polycycle by Huang Jiqing (1977, 1984), the formation of the basement of the Tarim basin and its characteristics are summarized. The prototype basins formed since Sinian times are classified into rift basin, continental marginal basin, cratonic basin, foreland basin and others. The Tarim basin is regarded as a huge oil- and gas-bearing basin superposed by prototype basins of different ages. The tectonic characteristics of these basins including tectonic movements, tectonic migrations, faults and trap types are summarized. In addition, structural control over oil and gas and oil-forming features are analysed.

  20. Mississippian facies relationships, eastern Anadarko basin, Oklahoma

    SciTech Connect

    Peace, H.W. ); Forgotson, J.M. )

    1991-08-01

    Mississippian strata in the eastern Anadarko basin record a gradual deepening of the basin. Late and post-Mississippian tectonism (Wichita and Arbuckle orogenies) fragmented the single large basin into the series of paired basins and uplifts recognized in the southern half of Oklahoma today. Lower Mississippian isopach and facies trends (Sycamore and Caney Formations) indicate that basinal strike in the study area (southeastern Anadarko basin) was predominantly east-west. Depositional environment interpretations made for Lower Mississippian strata suggest that the basin was partially sediment starved and exhibited a low shelf-to-basin gradient. Upper Mississippian isopach and facies trends suggest that basinal strike within the study area shifted from dominantly east-west to dominantly northwest-southeast due to Late Mississippian and Early Pennsylvanian uplift along the Nemaha ridge. Within the study area, the Chester Formation, composed of gray to dove-gray shales with interbedded limestones deposited on a carbonate shelf, thins depositionally into the basin and is thinnest at its facies boundary with the Springer Group and the upper portion of the Caney Formation. As basin subsidence rates accelerated, the southern edge of the Chester carbonate shelf was progressively drowned, causing a backstepping of the Chester Formation calcareous shale and carbonate facies. Springer Group sands and black shales transgressed northward over the drowned Chester Formation shelf.

  1. Medical Libraries From Ankara To London

    PubMed Central

    Kovacs, Helen

    1967-01-01

    Thirteen European libraries were visited and are described with special attention given to the Turkish and Hungarian library systems. Information and personal impressions give insight into European ideas of librarianship. PMID:6055865

  2. Geodynamics of the Sivas Basin (Turkey): from a forearc basin to a retroarc foreland basin

    NASA Astrophysics Data System (ADS)

    Legeay, Etienne; Ringenbach, Jean-Claude; Kergaravat, Charlie; Callot, Jean-Paul; Mohn, Geoffroy; Kavak, Kaan

    2016-04-01

    Anatolia records the consumption of several oceanic basins, from the Northern Neotethys domain, by north-dipping subduction until the end of Mesozoic. The associated obduction event occurred during Campanian, from North to South and from Greece to Oman, leading to the emplacement of ophiolite thrust sheets and associated ophiolitic mélange. In particular, the Sivas Basin in Eastern Anatolia is located at the boundary between the Kırsehir block to the East, Pontide arc to the North and Tauride Platform to the South, sutured by ophiolitic belts. The Sivas Basin formed a Tertiary fold-and-thrust belt, which exhibits mainly north verging thrust in Paleogene deposits, and South verging thrust in oligo-miocene sequence. To understand the northern verging thrust above south verging obduction, it is necessary to zoom out of the basin, and include a set of processes that affect the eastern Anatolia. This study aims to characterize the structural and sedimentary evolution of the Sivas Basin, based on a fieldwork approach, coupled to the interpretation of subsurface data, thermochronology and biostratigraphy. The Sivas Basin was initiated in a forearc setting relatively to the subduction of the Inner-Tauride Ocean while the associated ophiolites are obducted onto the northern passive margin of the Tauride margin. Early Maastrichtian to Paleocene deposits are represented by carbonate platforms located on ophiolitic highs, passing to turbidites and olistostomes toward the North. The early Eocene sediments, mainly composed of ophiolitic clasts, are deposited on a regional unconformity marked along the southern margin of the basin by incisions in response to the emergence of north-verging thrust. The middle Eocene sediments, intensively folded by northward thrusting, are mostly represented by flysch type deposits (olistostromes, mass-flows and turbidites). The onset of the compression is related to the initiation of the Taurus shortening in a retroarc situation, in response to

  3. Hydrocarbon accumulations in the Tarim basin, China

    SciTech Connect

    Li Desheng; Liang Digang; Jia Chengzao; Wang Gang

    1996-10-01

    The Tarim basin is the largest and least explored inland basin in China. The areal extent of the basin reaches 560,000 km{sup 2}. The interior of the basin is mostly covered by the Takla Mekan Desert, which is about 330,000 km{sup 2} in areal extent. The basin has become the object of special attention since China set aside first- and third-round onshore bidding blocks in the Tarim basin for foreign oil firms to explore. The Tarim basin is a polyhistory superimposed basin that has experienced seven evolutionary stages: (1) Sinian-Cambrian-Ordovician aulacogen stage, (2) Silurian-Devonian intracratonic depression stage, (3) Carboniferous marginal sea stage, (4) Permian rift basin stage, (5) Triassic-Jurassic foreland basin stage, (6) Cretaceous-Paleogene NeoTethys bay stage, and (7) Neogene-Pleistocene foreland and inland basin stage. Both the basin`s Paleozoic marine platform sequences and the Mesozoic-Cenozoic terrestrial fills are believed to contain substantial volumes of hydrocarbons. After recent years of exploration, nine oil and gas fields have been proven and 23 discoveries have been made in the Tabei, Tazhong, and Southwest areas. Kekeya, Lunnan, Sangtamu, Jiefangqudong, Donghetang, and Tazhong 4 oil fields have been put into production. Output of crude oil was 2.6 million t (metric tons) (52,000 BOPD) in 1995. The production will increase to 5 million t (100,000 BOPD) in 1997. Giant oil and gas traps probably will be discovered in the Tarim basin. The prospect is promising.

  4. Keuper stratigraphic cycles in the Paris basin and comparison with cycles in other peritethyan basins (German basin and Bresse-Jura basin)

    NASA Astrophysics Data System (ADS)

    Bourquin, Sylvie; Guillocheau, François

    1996-09-01

    High-resolution sequence stratigraphy of the Keuper, Paris Basin, is used to establish correlations between the basin-centre evaporite series and the basin-margin clastics series. The high-resolution correlations show stratigraphic cycle geometries. The Keuper consists of five minor base-level cycles whth occur in the upper portion of the Scythian-Carnian major base-level cycle and the lower part of the Carnian-Liassic major base-level cycle. The maximum relative rate of subsidence for the base-level fall phase of the Scythian-Carnian major cycle occurs in the eastern part of the Paris Basin. During the base-level rise phase of the Carnian-Liassic major cycle, the area of highest rate of subsidence shifted westwards and northwards. This shift records the first occurrence of an independent Paris Basin which was no longer merely the western margin of the German Basin. Two phases of tectonic movement influenced evaporite sedimentation and sequence geometries by creating areas of subsidence where halite could accumulate. The second, within the 'Marnes irisées supérieures', induced a general westward and northward tilt of the basin. Concurrent migration of depocentres to the west and north produced an intra-'Marnes irisées supérieures' truncation. Comparison of the stratigraphic records of the Paris Basin and of other Triassic Peritethyan basins (German Basin, Bresse-Jura Basin and South-East Basin) reveals numerous similarities. The coastal onlap curve of the German Keuper (Aigner and Bachmann, 1992) exhibits many similarities with the sequence evolution of the Paris Basin. But the Triassic succession is more complete in the German Basin and more cycles are observed. The major difference between these two basins during the Keuper is that the 'Marnes irisées inférieures' minor base-level cycle does not occur in the German Basin. In the Bresse-Jura Basin, the major difference concerns the Lettenkohle. One minor base-level cycle is recorded in the Paris Basin while

  5. THE ADVANCED CHEMISTRY BASINS PROJECT

    SciTech Connect

    William Goddard; Peter Meulbroek; Yongchun Tang; Lawrence Cathles III

    2004-04-05

    In the next decades, oil exploration by majors and independents will increasingly be in remote, inaccessible areas, or in areas where there has been extensive shallow exploration but deeper exploration potential may remain; areas where the collection of data is expensive, difficult, or even impossible, and where the most efficient use of existing data can drive the economics of the target. The ability to read hydrocarbon chemistry in terms of subsurface migration processes by relating it to the evolution of the basin and fluid migration is perhaps the single technological capability that could most improve our ability to explore effectively because it would allow us to use a vast store of existing or easily collected chemical data to determine the major migration pathways in a basin and to determine if there is deep exploration potential. To this end a the DOE funded a joint effort between California Institute of Technology, Cornell University, and GeoGroup Inc. to assemble a representative set of maturity and maturation kinetic models and develop an advanced basin model able to predict the chemistry of hydrocarbons in a basin from this input data. The four year project is now completed and has produced set of public domain maturity indicator and maturation kinetic data set, an oil chemistry and flash calculation tool operable under Excel, and a user friendly, graphically intuitive basin model that uses this data and flash tool, operates on a PC, and simulates hydrocarbon generation and migration and the chemical changes that can occur during migration (such as phase separation and gas washing). The DOE Advanced Chemistry Basin Model includes a number of new methods that represent advances over current technology. The model is built around the concept of handling arbitrarily detailed chemical composition of fluids in a robust finite-element 2-D grid. There are three themes on which the model focuses: chemical kinetic and equilibrium reaction parameters, chemical

  6. Formation of lunar basin rings

    USGS Publications Warehouse

    Hodges, C.A.; Wilhelms, D.E.

    1978-01-01

    The origin of the multiple concentric rings that characterize lunar impact basins, and the probable depth and diameter of the transient crater have been widely debated. As an alternative to prevailing "megaterrace" hypotheses, we propose that the outer scarps or mountain rings that delineate the topographic rims of basins-the Cordilleran at Orientale, the Apennine at Imbrium, and the Altai at Nectaris-define the transient cavities, enlarged relatively little by slumping, and thus are analogous to the rim crests of craters like Copernicus; inner rings are uplifted rims of craters nested within the transient cavity. The magnitude of slumping that occurs on all scarps is insufficient to produce major inner rings from the outer. These conclusions are based largely on the observed gradational sequence in lunar central uplifts:. from simple peaks through somewhat annular clusters of peaks, peak and ring combinations and double ring basins, culminating in multiring structures that may also include peaks. In contrast, belts of slump terraces are not gradational with inner rings. Terrestrial analogs suggest two possible mechanisms for producing rings. In some cases, peaks may expand into rings as material is ejected from their cores, as apparently occurred at Gosses Bluff, Australia. A second process, differential excavation of lithologically diverse layers, has produced nested experimental craters and is, we suspect, instrumental in the formation of terrestrial ringed impact craters. Peak expansion could produce double-ring structures in homogeneous materials, but differential excavation is probably required to produce multiring and peak-in-ring configurations in large lunar impact structures. Our interpretation of the representative lunar multiring basin Orientale is consistent with formation of three rings in three layers detected seismically in part of the Moon-the Cordillera (basin-bounding) ring in the upper crust, the composite Montes Rook ring in the underlying

  7. The Central European Permian Basins; Rheological and structural controls on basin history and on inter-basin connectivity

    NASA Astrophysics Data System (ADS)

    Smit, Jeroen; Van Wees, Jan-Diederik; Cloetingh, Sierd

    2014-05-01

    We analyse the relative importance of the major crustal-scale fault zones and crustal architecture in controlling basin formation, deformation and the structural connections between basins. The North and South Permian Basins of Central Europe are usually defined by the extend of Rotliegend sedimentary and volcanic units and not by a common tectonic origin or development. Instead, the sub-basins that together form the Permian Basins are each controlled by different structural and/or rheological controls that are inherited from Early Paleozoïc and older geodynamic processes, they are even located in different crustal/lithospheric domains. The North Permian basin is located on Baltic crust that was thinned during Late Proterozoïc - Early Paleozoïc times. South of the Thor suture, the South Permian basin and its sub-basins are located on Avalonian crust (Southern North Sea and North German Basins) and on the transition of East European cratonic and Avalonian crust (Polish Through). The size of crustal domains and of the faults that govern basin formation requires a regional-scale to assess their impact on basins and sub-basins. In the case of the Permian Basins this encompasses East Avalonia and surroundings, roughly speaking the area north of the Variscan Rheïc suture, east of the Atlantic and southwest of the Teisseyre-Tornquist line. This approach sheds light on the effects of long lived differences in crustal fabric which are responsible for spatial heterogeneity in stress and strain magnitudes and zonations of fracturing, burial history and temperature history. The focus on understanding the geomechanical control of large crustal-scale fault structures will provide the constraints and geometrical and compositional input for local models of stress and strain. Considering their fundamentally different structural and rheological controls, the Permian (sub)basins have a remarkably common history of subsidence and inversion, suggesting a more or less continuous

  8. CLEAR LAKE BASIN 2000 PROJECT

    SciTech Connect

    LAKE COUNTY SANITATION DISTRICT

    2003-03-31

    The following is a final report for the Clear Lake Basin 2000 project. All of the major project construction work was complete and this phase generally included final details and testing. Most of the work was electrical. Erosion control activities were underway to prepare for the rainy season. System testing including pump stations, electrical and computer control systems was conducted. Most of the project focus from November onward was completing punch list items.

  9. The sedimentary basins of Tanzania - reviewed

    NASA Astrophysics Data System (ADS)

    Mbede, E. I.

    The sedimentary basins of Tanzania have been classified into four morphotectonic groups: the coastal basin, the Karoo rift basins, basins found within the present East African rift valley and the cratonic sag basins. Except for the cratonic sag basins, each of these basin group has been affected by rifting at one time or another. The geology of each basin is discussed, structural evolution is evaluated and the prospectivity is thence looked into. Coal is exploited at Songwe-Kiwira coalfield and is found in potentially economic quantities in other Karoo basins. Prospecting for hydrocarbon resources has been going on since the 50s. Gas has been discovered in Songosongo and Mnazi bay fields, uneconomical quantities of oil have also been reported in Songosongo. Being basically rift basins which have reached different stages of development, source rocks normally associated with Initial-rifting, synrifting as well as post-rifting processes are probably well developed. Reservoir rocks, traps and cap rocks are normally not rare in such tectonic environments. Thermal gradients associated with the rifting stage are normaly high to effect maturation of source rocks even at low sedimentary thicknesses. Studies done so far are still inconclusive, because while testing has mainly been focused on structural traps stratigraphic traps seems to be more promising.

  10. K West Basin canister survey

    SciTech Connect

    Pitner, A.L.

    1998-08-26

    A survey was conducted of the K West Basin to determine the distribution of canister types that contain the irradiated N Reactor fuel. An underwater camera was used to conduct the survey during June 1998, and the results were recorded on videotape. A full row-by-row survey of the entire basin was performed, with the distinction between aluminum and stainless steel Mark 1 canisters made by the presence or absence of steel rings on the canister trunions (aluminum canisters have the steel rings). The results of the survey are presented in tables and figures. Grid maps of the three bays show the canister lid ID number and the canister type in each location that contained fuel. The following abbreviations are used in the grid maps for canister type designation: IA = Mark 1 aluminum, IS = Mark 1 stainless steel, and 2 = Mark 2 stainless steel. An overall summary of the canister distribution survey is presented in Table 1. The total number of canisters found to contain fuel was 3842, with 20% being Mark 1 Al, 25% being Mark 1 SS, and 55% being Mark 2 SS. The aluminum canisters were predominantly located in the East and West bays of the basin.

  11. Basin stability in delayed dynamics

    PubMed Central

    Leng, Siyang; Lin, Wei; Kurths, Jürgen

    2016-01-01

    Basin stability (BS) is a universal concept for complex systems studies, which focuses on the volume of the basin of attraction instead of the traditional linearization-based approach. It has a lot of applications in real-world systems especially in dynamical systems with a phenomenon of multi-stability, which is even more ubiquitous in delayed dynamics such as the firing neurons, the climatological processes, and the power grids. Due to the infinite dimensional property of the space for the initial values, how to properly define the basin’s volume for delayed dynamics remains a fundamental problem. We propose here a technique which projects the infinite dimensional initial state space to a finite-dimensional Euclidean space by expanding the initial function along with different orthogonal or nonorthogonal basis. A generalized concept of basin’s volume in delayed dynamics and a highly practicable calculating algorithm with a cross-validation procedure are provided to numerically estimate the basin of attraction in delayed dynamics. We show potential applicabilities of this approach by applying it to study several representative systems of biological or/and physical significance, including the delayed Hopfield neuronal model with multistability and delayed complex networks with synchronization dynamics. PMID:26907568

  12. Biogeochemistry of a Suburban Basin

    NASA Astrophysics Data System (ADS)

    McDowell, W. H.; Daley, M. L.; Blumberg, J.

    2002-12-01

    A long-term research effort was recently established in the Lamprey River basin in southeastern New Hampshire. The watershed is largely forested, and has significant amounts of wetlands due to the relatively low topographic relief. Human population growth is rapid, resulting in conversion of forest and agricultural land to housing tracts. The primary focus of the project will be to examine the relationships between land use, land cover and water quality as the watershed continues to increase in population density. A secondary emphasis will be to examine the interactions between hydrologic flow paths, climatic variability, and biogeochemical processes that drive groundwater and surface water quality in the basin. Our initial work has quantified landscape attributes and related them to water quality. Results to date show that small tributary streams are relatively high in nitrogen relative to the main stem of the Lamprey; that human population density drives nitrate concentrations in the basin; and that DOC flux is predicted well by the model of Aitkenhead and McDowell that links DOC flux to watershed C:N ratio.

  13. Basin stability in delayed dynamics

    NASA Astrophysics Data System (ADS)

    Leng, Siyang; Lin, Wei; Kurths, Jürgen

    2016-02-01

    Basin stability (BS) is a universal concept for complex systems studies, which focuses on the volume of the basin of attraction instead of the traditional linearization-based approach. It has a lot of applications in real-world systems especially in dynamical systems with a phenomenon of multi-stability, which is even more ubiquitous in delayed dynamics such as the firing neurons, the climatological processes, and the power grids. Due to the infinite dimensional property of the space for the initial values, how to properly define the basin’s volume for delayed dynamics remains a fundamental problem. We propose here a technique which projects the infinite dimensional initial state space to a finite-dimensional Euclidean space by expanding the initial function along with different orthogonal or nonorthogonal basis. A generalized concept of basin’s volume in delayed dynamics and a highly practicable calculating algorithm with a cross-validation procedure are provided to numerically estimate the basin of attraction in delayed dynamics. We show potential applicabilities of this approach by applying it to study several representative systems of biological or/and physical significance, including the delayed Hopfield neuronal model with multistability and delayed complex networks with synchronization dynamics.

  14. Uranium geochemistry of Orca Basin

    NASA Astrophysics Data System (ADS)

    Weber, F. F., Jr.; Sackett, W. M.

    1981-08-01

    Orca Basin, an anoxic, brine-filled depression at a depth of 2200 m in the Northwestern Gulf of Mexico continental slope, has been studied with respect to its uranium geochemistry. Uranium concentration profiles for four cores from within the basin were determined by delayed-neutron counting. Uranium concentrations ranged from 2.1 to 4.1 ppm on a salt-free and carbonate-corrected basis. The highest uranium concentrations were associated with the lowest percentage and δ 13C organic carbon values. For comparison, cores frm the brine-filled Suakin and Atlantis II Deeps, both in the Red Sea, were also analyzed. Uranium concentrations ranged from 1.2 to 2.6 ppm in the Suakin Deep and from 8.0 to 11.0 ppm in the Atlantis II Deep. No significant correlation was found between uranium concentrations and organic carbon concentrations and δ 13C values for these cores. Although anoxic conditions are necessary for significant uranium uptake by non-carbonate marine sediments, other factors such as dilution by rapidly depositing materials and uranium supply via mixing and diffusion across density gradients may be as important in determining uranium concentrations in hypersaline basin sediments.

  15. The geologic history of Margaritifer basin, Mars

    NASA Astrophysics Data System (ADS)

    Salvatore, M. R.; Kraft, M. D.; Edwards, C. S.; Christensen, P. R.

    2016-03-01

    In this study, we investigate the fluvial, sedimentary, and volcanic history of Margaritifer basin and the Uzboi-Ladon-Morava outflow channel system. This network of valleys and basins spans more than 8000 km in length, linking the fluvially dissected southern highlands and Argyre basin with the northern lowlands via Ares Vallis. Compositionally, thermophysically, and morphologically distinct geologic units are identified and are used to place critical relative stratigraphic constraints on the timing of geologic processes in Margaritifer basin. Our analyses show that fluvial activity was separated in time by significant episodes of geologic activity, including the widespread volcanic resurfacing of Margaritifer basin and the formation of chaos terrain. The most recent fluvial activity within Margaritifer basin appears to terminate at a region of chaos terrain, suggesting possible communication between surface and subsurface water reservoirs. We conclude with a discussion of the implications of these observations on our current knowledge of Martian hydrologic evolution in this important region.

  16. Biological science in the Great Basin

    USGS Publications Warehouse

    U.S. Geological Survey

    2005-01-01

    The Great Basin is an expanse of desert and high moun-tains situated between the Rocky Mountains and the Sierra Nevada of the western United States. The most explicit description of the Great Basin is that area in the West where surface waters drain inland. In other words, the Great Basin is comprised of many separate drainage areas - each with no outlet. What at first glance may appear as only a barren landscape, the Great Basin upon closer inspection reveals island mountains, sagebrush seas, and intermittent aquatic habitats, all teeming with an incredible number and variety of plants and animals. Biologists at the USGS are studying many different species and ecosystems in the Great Basin in order to provide information about this landscape for policy and land-management decision-making. The following stories represent a few of the many projects the USGS is conducting in the Great Basin.

  17. UPPER SNAKE RIVER PRIORITY BASIN ACCOMPLISHMENT PLAN, APRIL 1973

    EPA Science Inventory

    The Upper Snake Accomplishment Basin (17040104, 170402, 170501) is defined as the Idaho and Oregon portions of 2 STORET Basins, the Upper Snake Basin and the Central Snake Basin. The Basin drains approximately 62,100 square miles in Southern Idaho and Southeastern Oregon. Four ...

  18. Reserves in western basins: Part 1, Greater Green River basin

    SciTech Connect

    Not Available

    1993-10-01

    This study characterizes an extremely large gas resource located in low permeability, overpressured sandstone reservoirs located below 8,000 feet drill depth in the Greater Green River basin, Wyoming. Total in place resource is estimated at 1,968 Tcf. Via application of geologic, engineering and economic criteria, the portion of this resource potentially recoverable as reserves is estimated. Those volumes estimated include probable, possible and potential categories and total 33 Tcf as a mean estimate of recoverable gas for all plays considered in the basin. Five plays (formations) were included in this study and each was separately analyzed in terms of its overpressured, tight gas resource, established productive characteristics and future reserves potential based on a constant $2/Mcf wellhead gas price scenario. A scheme has been developed to break the overall resource estimate down into components that can be considered as differing technical and economic challenges that must be overcome in order to exploit such resources: in other words, to convert those resources to economically recoverable reserves. Total recoverable reserves estimates of 33 Tcf do not include the existing production from overpressured tight reservoirs in the basin. These have estimated ultimate recovery of approximately 1.6 Tcf, or a per well average recovery of 2.3 Bcf. Due to the fact that considerable pay thicknesses can be present, wells can be economic despite limited drainage areas. It is typical for significant bypassed gas to be present at inter-well locations because drainage areas are commonly less than regulatory well spacing requirements.

  19. Reserve estimates in western basins. Part 2: Piceance Basin

    SciTech Connect

    1995-10-01

    This study characterizes an extremely large gas resource located in low permeability, sandstone reservoirs of the Mesaverde group in the Piceance Basin, Colorado. Total in place resource is estimated at 307.3 Tcf. Via application of geologic, engineering and economic criteria, the portion of this resource potentially recoverable as reserves is estimated. Those volumes estimated include probable, possible and potential categories and total 5.8 Tcf as a mean estimate of recoverable gas for all plays considered in the basin. About 82.6% of the total evaluated resource is contained within sandstones that have extremely poor reservoir properties with permeabilities considered too low for commerciality using current frac technology. Cost reductions and technology improvements will be required to unlock portions of this enormous resource. Approximately 2.7% of the total resource is contained within sandstone reservoirs which do not respond to massive hydraulic fracture treatments, probably due to their natural lenticular nature. Approximately 6.8% of the total resource is located in deeply buried settings below deepest established production. Approximately 7.9% of the total resource is considered to represent tight reservoirs that may be commercially exploited using today`s hydraulic fracturing technology. Recent technology advances in hydraulic fracturing practices in the Piceance Basin Mesaverde has resulted in a marked improvement in per well gas recovery which, where demonstrated, has been incorporated into the estimates provided in this report. This improvement is so significant in changing the risk-reward relationship that has historically characterized this play, that previously uneconomic areas and resources will graduate to the economically exploitable category. 48 refs., 96 figs., 18 tabs.

  20. Petroleum system of the Gippsland Basin, Australia

    USGS Publications Warehouse

    Bishop, Michele G.

    2000-01-01

    The Gippsland Basin Province 3930, located on the southeastern coast of Australia, is formed from two successive failed rifts that developed into a passive margin during the Cretaceous. Formation of this basin is related to the break up of Gondwana, which resulted in the separation of Antarctica from Australia, and the separation of the New Zealand and Lord Howe Rise continental crust from Australia. Coals and coaly shales of Late Cretaceous through Eocene age are the source rocks for oil and gas that accumulated predominantly in anticlinal traps. The basin was Australia?s major producing basin until 1996 when daily oil/condensate production from the North West Shelf surpassed it.

  1. Petroleum geology of Norton basin, Alaska

    SciTech Connect

    Fisher, M.A.

    1982-03-01

    Basement rocks beneath the main part of the Norton basin were deformed and heated during the Late Jurassic and Early Cretaceous to the extent that these rocks were not capable of generating hydrocarbons when the basin formed during the latest Cretaceous or early Paleogene. Consequently, source rocks for oil, if they exist, are most likely to be within the basin fill. If the Norton basin began to form 65 m.y. ago, subsided at a nearly constant rate, and had an average geothermal gradient of between 35 and 45/sup 0/C/km, then rocks as young as late Oligocene are in the oil window (vitrinite reflectance between 0.65 and 1.30%). The appearance on seismic sections of reflections from rocks in and below the calculated oil window suggests that these rocks were deposited in a nonmarine environment. Thus, gas and condensate are the most likely hydrocarbons to be present in the basin. Because of their shallow depth of burial, Neogene (possibly marine) rocks are not likely to be thermally mature anywhere in the basin. Deep parts of the basin formed as isolated faultbounded lows; consequently, the volume of mature rocks makes up at most 11% of the total basin fill. Numerous potential traps for hydrocarbons exist in the Norton basin; the traps include fractured or weathered basement rocks in horsts, strata in alluvial fans on the flanks of horsts, and arched strata over horsts.

  2. Late Paleozoic structural evolution of Permian basin

    SciTech Connect

    Ewing, T.E.

    1984-04-01

    The southern Permian basin is underlain by the NNW-trending Central Basin disturbed belt of Wolfcamp age (Lower Permian), the deep Delaware basin to its west, and the shallower Midland basin to its eat. The disturbed belt is highly segmented with zones of left-lateral offset. Major segments from south to north are: the Puckett-Grey Ranch zone; the Fort Stockton uplift; the Monahans transverse zone; the Andector ridges and the Eunice ridge; the Hobbs transverse zone; and the Tatum ridges, which abut the broad Roosevelt uplift to the north. The disturbed belt may have originated along rift zones of either Precambrian or Cambrian age. The extent of Lower and Middle Pennsylvanian deformation is unclear; much of the Val Verde basin-Ozona arch structure may have formed then. The main Wolfcamp deformation over thrust the West Texas crustal block against the Delaware block, with local denudation of the uplifted edge and eastward-directed backthrusting into the Midland basin. Latter in the Permian, the area was the center of a subcontinental bowl of subsidence - the Permian basin proper. The disturbed belt formed a pedestal for the carbonate accumulations which created the Central Basin platform. The major pre-Permian reservoirs of the Permian basin lie in large structural and unconformity-bounded traps on uplift ridges and domes. Further work on the regional structural style may help to predict fracture trends, to assess the timing of oil migration, and to evaluate intrareservoir variations in the overlying Permian giant oil fields.

  3. Basin Management under the Global Climate Change (Take North-East Asia Heilongjiang -Amur Basin and Taihu Basin For Example)

    NASA Astrophysics Data System (ADS)

    Liu, S.; Zhou, Z.; Zhong, G.; Zhang, X.

    2015-12-01

    The impact of global climate change on environment and society causes increasingly concern in different countries around the world. The main climate characteristic values, such as precipitation and temperature, have been changed, which leads to the variation of water resources, especially in large basins. Heilongjiang-Amur Basin and Taihu Basin are two large and important basins in China with large area and population. As global climate change and human activities have siganificant impacts on hydrology and water resources in two basins, the analysis of climate change are of great value. In this study, in Heilongjiang-Amur Basin, precipitation and temperature are investigated and their variation are predicted. And in Taihu Basin, precipitation including plum rain and typhoon, are studied and the variation trend of precipitation is predicted. Hence, the impacts of global climate change are assessed. From the result, it shows that the average temperature will continue to increase, and the precipitation will reduce first and then turn to increase in these two basins. It demonstrates that the water resources have been affected a lot by climate change as well as human activities. And these conclusions are provided as reference for policy makers and basin authorities in water resources management and natural hazards mitigation. Meanwhile, according to basins' particualr characters, the suggestions to future water resources management in two basins are given, and more scientific, comprehensive and sustained managements are required. Especially, in Heilongjiang-Amur River, which is a boundary river between China and Russia, it is very essential to enhance the cooperation between two countries.

  4. Regional geophysics and the basement of cratonic basins: a comparative study with the Michigan basin

    SciTech Connect

    Hinze, W.J.; Lidiak, E.G.

    1986-08-01

    The basement of the Michigan basin consists of four major provinces - the complex metasedimentary, metavolcanic, and igneous rocks of the Penokean orogenic assemblage in the north, the felsic anorogenic igneous rocks to the south, the highly metamorphosed schists, gneisses, and related igneous intrusions of the Grenville province in the east, and a middle Proterozoic rift zone, which transects the basin from the north to the southeast margin. Sparse basement drill holes and characteristic geophysical patterns support this interpretation. The direct geologic information on the basement of other cratonic basins is not as well known. However, regional geophysical surveys and sparse, poorly distributed basement drill holes provide information on the complex character and structural relationships of the basement of other basins. Like the Michigan basin, many cratonic basins (e.g., Illinois, Williston, and Paris basins) are underlain by dense and commonly more magnetic rocks than adjacent areas. As in the Michigan basin, these rocks are interpreted to have a profound effect on the origin and tectonic development of the basins. Geologic and geophysical evidence indicates that many of these dense basement rocks originated in rifts that formed hundreds of millions of years prior to basin development. A comparison of the basement in cratonic basins provides important constraints on the origin and tectonic development of the Michigan basin.

  5. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2001-09-28

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. EPA requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard and must consider inadvertent drilling into the repository at some future time.

  6. 75 FR 43915 - Basin Electric Power Cooperative: Deer Creek Station

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-27

    ... Rural Utilities Service Basin Electric Power Cooperative: Deer Creek Station AGENCY: Rural Utilities... CFR Part 1794), and the Western Area Power Administration's (Western) NEPA implementing regulations... environmental impacts of and alternatives to Basin Electric Power Cooperative's (Basin Electric) application...

  7. Seismic Characterization of the Jakarta Basin

    NASA Astrophysics Data System (ADS)

    Cipta, A.; Saygin, E.; Cummins, P. R.; Masturyono, M.; Rudyanto, A.; Irsyam, M.

    2015-12-01

    Jakarta, Indonesia, is home to more than 10 million people. Many of these people live in seismically non-resilient structures in an area that historical records suggest is prone to earthquake shaking. The city lies in a sedimentary basin composed of Quaternary alluvium that experiences rapid subsidence (26 cm/year) due to groundwater extraction. Forecasts of how much subsidence may occur in the future are dependent on the thickness of the basin. However, basin geometry and sediment thickness are poorly known. In term of seismic hazard, thick loose sediment can lead to high amplification of seismic waves, of the kind that led to widespread damage in Mexico city during the Michoacan Earthquake of 1985. In order to characterize basin structure, a temporary seismograph deployment was undertaken in Jakarta in Oct 2013- Jan 2014. A total of 96 seismic instrument were deployed throughout Jakarta were deployed throughout Jakarta at 3-5 km spacing. Ambient noise tomography was applied to obtain models of the subsurface velocity structure. Important key, low velocity anomalies at short period (<8s) correspond to the main sedimentary sub-basins thought to be present based on geological interpretations of shallow stratigraphy in the Jakarta Basin. The result shows that at a depth of 300 m, shear-wave velocity in the northern part (600 m/s) of the basin is lower than that in the southern part. The most prominent low velocity structure appears in the northwest of the basin, down to a depth of 800 m, with velocity as low as 1200 m/s. This very low velocity indicates the thickness of sediment and the variability of basin geometry. Waveform computation using SPECFEM2D shows that amplification due to basin geometry occurs at the basin edge and the thick sediment leads to amplification at the basin center. Computation also shows the longer shaking duration occurrs at the basin edge and center of the basin. The nest step will be validating the basin model using earthquake events

  8. Cenozoic evolution of San Joaquin basin, California

    SciTech Connect

    Bartow, J.A.

    1988-03-01

    The Neogene San Joaquin basin in the southern part of the 700-km long Great Valley of California is a successor to a late Mesozoic and earliest Tertiary forearc basin. The transition from forearc basin to the more restricted Neogene marine basin occurred principally during the Paleogene as the plate tectonic setting changed from oblique convergence to normal convergence, and finally to the initiation of tangential (transform) movement near the end of the Oligocene. Regional-scale tectonic events that affected the basin include: (1) clockwise rotation of the southernmost Sierra Nevada, and large-scale en echelon folding in the southern Diablo Range, both perhaps related to Late Cretaceous and early Tertiary right slip on the proto-San-Andreas fault; (2) regional uplift of southern California in the Oligocene that resulted from the subduction of the Pacific-Farallon spreading ridge: (3) extensional tectonism in the Basin and Range province, particularly in the Miocene; (4) wrench tectonism adjacent to the San Andreas fault in the Neogene; (5) northeastward emplacement of a wedge of the Franciscan complex at the west side of the Sierran block, with associated deep-seated thrusting in the late Cenozoic; and (6) the accelerated uplift of the Sierra Nevada beginning in the late Miocene. Neogene basin history was controlled principally by the tectonic effects of the northwestward migration of the Mendocino triple junction along the California continental margin and by the subsequent wrench tectonism associated with the San Andreas fault system. East-west compression in the basin, resulting from extension in the Basin and Range province was an important contributing factor to crustal shortening at the west side of the valley. Analysis of the sedimentary history of the basin, which was controlled to some extent by eustatic sea level change, enables reconstruction of the basin paleogeography through the Cenozoic.

  9. Basin-scale relations via conditioning

    USGS Publications Warehouse

    Troutman, B.M.; Karlinger, M.R.; Guertin, D.P.

    1989-01-01

    A rainfall-runoff model is used in conjunction with a probabilistic description of the input to this model to obtain simple regression-like relations for basin runoff in terms of basin and storm characteristics. These relations, similar to those sought in regionalization studies, are computed by evaluating the conditional distribution of model output given basin and storm characteristics. This method of conditioning provides a general way of examining model sensitivity to various components of model input. The resulting relations may be expected to resemble corresponding relations obtained by regionalization using actual runoff to the extent that the rainfall-runoff model and the model input specification are physically realistic. The probabilistic description of model input is an extension of so-called "random-model" of channel networks and involves postulating an ensemble of basins and associated probability distributions that mimic the variability of basin characteristics seen in nature. Application is made to small basins in the State of Wyoming. Parameters of the input variable distribution are estimated using data from Wyoming, and basin-scale relations are estimated both, parametrically and nonparametrically using model-generated runoff from simulated basins. Resulting basin-scale relations involving annual flood quantiles are in reasonable agreement with those presented in a previous regionalization study, but error estimates are smaller than those in the previous study, an artifact of the simplicity of the rainfall-runoff model used in this paper. We also obtain relations for peak of the instantaneous unit hydrograph which agree fairly well with theoretical relations given in the literature. Finally, we explore the issues of sensitivity of basin-scale, relations and error estimates to parameterization of the model input probability distribution and of how this sensitivity is related to making inferences about a particular ungaged basin. ?? 1989 Springer-Verlag.

  10. BASINS

    EPA Science Inventory

    Resource Purpose:The U.S EPA's water programs and their counterparts in states and pollution control agencies are increasingly emphasizing watershed- and water quality-based assessment and integrated analysis of point and nonpoint sources. Better Assessment Science Integra...

  11. Drought Variability in Mediterranean Basin

    NASA Astrophysics Data System (ADS)

    Meko, D. M.; Touchan, R.

    2010-12-01

    Projections from general circulation models are consistent in identifying the Mediterranean Basin as a region of expected drying in response to increased greenhouse gases. The Mediterranean and its bordering countries, while giving rise to the classic “Mediterranean” climate-type, are characterized by a complex precipitation climatology, with strong influences from land-sea contrasts, topography, intrusions of polar air from various lowland pathways, and occasional tropical influence from systems originating south of the Atlas Mountains. Identification of an anthropogenic signature of drying with instrumental climate data can benefit from information on the natural spatio-temporal variability of drought on time scales of decades to centuries in this complex precipitation regime. An expanding tree-ring network will eventually yield multi-century drought records for the region (117 chronologies now developed or in progress). Aspects of spatio-temporal variability on shorter time scales in the southern part of the Mediterranan Basin (south of about 40°N) are examined in this presentation with the aid of gridded precipitation, temperature and Z-index - a dimensionless intermediate variable in Palmer Drought Index computation. Cross-spectral analysis is applied to summarize covariance of drought-related variables across the region. Ocean-atmosphere circulation indices are explored for direct causative factors in episodes of exceptional widespread seasonal and multi-season drought in the region.

  12. Frontier sedimentary basins of New Zealand region

    SciTech Connect

    Beggs, J.M. )

    1991-03-01

    Petroleum-prospective basins of New Zealand began to form by mid-Cretaceous rifting of crustal elements previously assembled at the Gondwana continental margin. During the latest Cretaceous-early Cenozoic New Zealand separated from Australia and Antarctica by sea-floor spreading. An overall transgression in widely recorded in this post-rift phase, with decreasing clastic sediment supply as land area and relief were reduced. Mid-Cenozoic initiation of the modern plate boundary has resulted in uplift of mountain ranges, subsidence and filling of troughs, progradation of the shelf, and common reactivation or eversion of older structures. Petroleum potential of less explored basins can be compared to the productive Taranki basin. Source rocks are coal-rich deposits of the rift phase, also developed in Great South, Canterbury/Chatham, Western Southland, West Coast, and Northland basins. A different source contributes to oil and gas seeps on the East Coast, a continental margin during Late Cretaceous. The main reservoirs of Taranaki are early Cenozoic coastal and fluvial sands, also present in Great South, Canterbury, and West Coast and possibly other basins. Other Taranaki reservoirs include mid-Cenozoic limestone and Miocene turbidites, which are widespread in most other basins. Pliocene limestones have excellent reservoir potential on the East Coast. Late Cenozoic tectonics, essential to trap development and significant for maturation in Taranaki, have created similar structures in basins near the plate boundary but are less significant in the development of Great South, eastern Canterbury/Chatham, and Northland basins.

  13. Basin wildrye: the forgotten grass revisited

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Basin wildrye was once a very abundant and widely occurring species throughout the landscapes of northern Nevada. When Captain Simpson, of the topographical Engineers, explored the route for a wagon road across the central Great Basin he marveled at the grass in the valley bottoms that reached to h...

  14. Water quality in the eastern Iowa basins

    USGS Publications Warehouse

    Kalkhoff, Stephen J.; Barnes, Kymm K.; Becher, Kent D.; Savoca, Mark E.; Schnoebelen, Douglas J.; Sadorf, Eric M.; Porter, Stephen D.; Sullivan, Daniel J.; Creswell, John

    2001-01-01

    The Eastern Iowa Basins Study Unit includes the Wapsipinicon, Cedar, Iowa, and Skunk River basins and covers approximately 19,500 square miles in eastern Iowa and southern Minnesota. More than 90 percent of the land in the study unit is used for agricultural purposes. Forested areas account for only 4 percent of the land area.

  15. 33 CFR 401.48 - Turning basins.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 3 2013-07-01 2013-07-01 false Turning basins. 401.48 Section 401.48 Navigation and Navigable Waters SAINT LAWRENCE SEAWAY DEVELOPMENT CORPORATION, DEPARTMENT OF TRANSPORTATION SEAWAY REGULATIONS AND RULES Regulations Seaway Navigation § 401.48 Turning basins. No vessel shall be turned about in any canal,...

  16. 33 CFR 401.48 - Turning basins.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 3 2012-07-01 2012-07-01 false Turning basins. 401.48 Section 401.48 Navigation and Navigable Waters SAINT LAWRENCE SEAWAY DEVELOPMENT CORPORATION, DEPARTMENT OF... vessels up to 180 m in overall length. (c) Turning Basin No. 3—Immediately south of Port Robinson (Mile...

  17. BASINS/HSPF WATERSHED MODEL TRAINING

    EPA Science Inventory

    Basins is an interactive Windows based interface to several DOS based water quality computer simulations, of which HSPF is one. The training course helped train 30 water quality modelers from the USEPA, States and Tribes in the use of Basins and HSPF. The training was three da...

  18. Sedimentary basins in Ross Sea, Antarctica

    SciTech Connect

    Cooper, A.K.; Davey, F.J.

    1986-07-01

    The Ross Sea lies in the Pacific sector of the Antarctic continental margin. Three major sedimentary basins (from east to west, the Eastern, Central, and Victoria Land basins) lie beneath the broad, deep continental shelf of the Ross Sea. These north-south-trending basins occur in the extensionally deformed region between East and West Antarctica. Multichannel seismic reflection (MCS) surveys have been conducted over these basins since 1980 by West German, French, Japanese, and US expeditions. The MCS and previous geophysical surveys have shown that the three basins contain 5-6 km of sedimentary rock, possibly Late Cretaceous and younger. An additional 6-8 km of sedimentary and volcanic rock lies within the deeper parts of the Victoria Land basin. The basins are separated by uplifted and eroded basement ridges covered by thin sedimentary sections. Each basin has distinct characteristics, commonly related to its extensional origin. Petroleum hydrocarbons are unknown from the Ross Sea region, with the possible exception of ethane gas recovered by the Deep Sea Drilling Project. Previous model studies, based on estimated sediment thickness, assumed temperature gradients, and postulated seismostratigraphy, indicate that hydrocarbons could be generated at depths of 3.5-6km within the sedimentary section. However, this hypothesis cannot be verified without further geologic and geophysical data from the Ross Sea region.

  19. Oil migration pattern in the Sirte Basin

    SciTech Connect

    Roohi, M.; Aburawi, R.M.

    1995-08-01

    Sirte Basin is an asymmetrical cratonic basin, situated in the north-central part of Libya. It covers an area of over 350,000km{sup 2} and is one of the most prolific oil-producing basins in the world. Sirte Basin is divided into large NW-SE trending sub-parallel platforms and troughs bounded by deep seated syndepositional normal faults. A very unique combination of thick sediments with rich source rocks in the troughs vs. thinner sediments with prolific reservoir rocks on the platforms accounts for the productivity of the basin. Analysis of oil migration pattern in the Sirte Basin will certainly help to discover the remaining reserves, and this can only be achieved if the important parameter of structural configuration of the basin at the time of oil migration is known. The present paper is an attempt to analyse the time of oil migration, to define the structural picture of the 4 Basin during the time of migration and to delineate the most probable connecting routes between the hydrocarbon kitchens and the oil fields.

  20. The structure of Nansen and Amundsen Basin

    NASA Astrophysics Data System (ADS)

    Micksch, U.; Jokat, W.

    2003-04-01

    During the AMORE expedition in August/September 2001, a US-German joint project, the Gakkel Ridge and the adjoining basins were investigated. In this contribution we report on the results of the seismic investigations in the Nansen Basin as well as in the Amundsen Basin. We obtained two almost parallel profiles through the Nansen Basin from the northeastern continental margin of Svalbard (29°E and 32°E) to the Gakkel Ridge at 17°E and 21°E. To investigate the Amundsen Basin, we left Gakkel Ridge at about 70°E towards Lomonossov Ridge for another transect. In total 1360 km of seismic reflection data with very good data quality were recorded. Parallel to the seismic reflection transects up to 30 sonobuoys were deployed. The data from both basins shows striking differences in the basement topography. While in the Nansen Basin the oceanic crust is more or less continuously shallowing, this is not the case in the Amundsen Basin. This points to some asymmetric spreading history of the Gakkel Ridge in northern and southern directions. Some of the Sonobuoys recorded also weak arrivals from the Moho discontinuity. The analysis of the wide angle and gravity data shows, that there are areas with a significant thinning of the oceanic crust. Results of the reflection and refraktion seismic as well as the gravity interpretation will be presented.

  1. Relation between Tethys sea and Tarim basin

    SciTech Connect

    Wei Junchao )

    1988-08-01

    The Tarim basin is the largest continental basin in China. It is known as the heart of central Asia. Still it was related to the Mediterranean Sea in the geological past. Based on the investigations of paleontology, stratigraphy, tectonics, and remote sensing, it is suggested that Tethys and the Tarim basin should be connected from the Late Cretaceous to Miocene. The northern branch of the Tethys sea channel began to pass through the Alay gap and invade the Tarim basin at the beginning of the Late Cretaceous. Up to the Miocene, marine invasion and marine regression must have happened six times in the western Tarim basin. The Paleocene marine invasion encroached upon the widest area and lasted the longest of the six times, which extended to the region of the southern Hotan River. The occurrence of the Paleocene marine fossils in the Kuqa Seg indicates the influence of the marine invasion. At the end of the Miocene, seawater receded fully from the Tarim basin. A Miocene petroleum field has been found in the Yecheng Seg of the western Tarim basin. According to the relationship between Tethys and the Tarim basin, the potentialities of the Late Cretaceous-Miocene hydrocarbon source are considered to be great.

  2. Scientific review of great basin wildfire issues

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The University Nevada Reno, College of Agriculture and Resource Concepts Inc., co-sponsored a Great Basin Wildfire Forum in September 2007 to address a “Scientific Review of the Ecological and Management History of Great Basin Natural Resources and Recommendations to Achieve Ecosystem Restoration”. ...

  3. Scientific Review of Great Basin Wildfire Issues

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The University Nevada Reno, College of Agriculture and Resource Concepts Inc., co-sponsored a Great Basin Wildfire Forum in September 2007 to address a “Scientific Review of the Ecological and Management History of Great Basin Natural Resources and Recommendations to Achieve Ecosystem Restoration”. ...

  4. Rifting Thick Lithosphere - Canning Basin, Western Australia

    NASA Astrophysics Data System (ADS)

    Czarnota, Karol; White, Nicky

    2016-04-01

    The subsidence histories and architecture of most, but not all, rift basins are elegantly explained by extension of ~120 km thick lithosphere followed by thermal re-thickening of the lithospheric mantle to its pre-rift thickness. Although this well-established model underpins most basin analysis, it is unclear whether the model explains the subsidence of rift basins developed over substantially thick lithosphere (as imaged by seismic tomography beneath substantial portions of the continents). The Canning Basin of Western Australia is an example where a rift basin putatively overlies lithosphere ≥180 km thick, imaged using shear wave tomography. Subsidence modelling in this study shows that the entire subsidence history of the <300 km wide and <6 km thick western Canning Basin is adequately explained by mild Ordovician extension (β≈1.2) of ~120 km thick lithosphere followed by post-rift thermal subsidence. This is consistent with the established model, described above, albeit with perturbations due to transient dynamic topography support which are expressed as basin-wide unconformities. In contrast the <150 km wide and ~15 km thick Fitzroy Trough of the eastern Canning Basin reveals an almost continuous period of normal faulting between the Ordovician and Carboniferous (β<2.0) followed by negligible post-rift thermal subsidence. These features cannot be readily explained by the established model of rift basin development. We attribute the difference in basin architecture between the western and eastern Canning Basin to rifting of thick lithosphere beneath the eastern part, verified by the presence of ~20 Ma diamond-bearing lamproites intruded into the basin depocentre. In order to account for the observed subsidence, at standard crustal densities, the lithospheric mantle is required to be depleted in density by 50-70 kg m-3, which is in line with estimates derived from modelling rare-earth element concentrations of the ~20 Ma lamproites and global isostatic

  5. Basins in ARC-continental collisions

    USGS Publications Warehouse

    Draut, Amy E.; Clift, Peter D.

    2012-01-01

    Arc-continent collisions occur commonly in the plate-tectonic cycle and result in rapidly formed and rapidly collapsing orogens, often spanning just 5-15 My. Growth of continental masses through arc-continent collision is widely thought to be a major process governing the structural and geochemical evolution of the continental crust over geologic time. Collisions of intra-oceanic arcs with passive continental margins (a situation in which the arc, on the upper plate, faces the continent) involve a substantially different geometry than collisions of intra-oceanic arcs with active continental margins (a situation requiring more than one convergence zone and in which the arc, on the lower plate, backs into the continent), with variable preservation potential for basins in each case. Substantial differences also occur between trench and forearc evolution in tectonically erosive versus tectonically accreting margins, both before and after collision. We examine the evolution of trenches, trench-slope basins, forearc basins, intra-arc basins, and backarc basins during arc-continent collision. The preservation potential of trench-slope basins is low; in collision they are rapidly uplifted and eroded, and at erosive margins they are progressively destroyed by subduction erosion. Post-collisional preservation of trench sediment and trench-slope basins is biased toward margins that were tectonically accreting for a substantial length of time before collision. Forearc basins in erosive margins are usually floored by strong lithosphere and may survive collision with a passive margin, sometimes continuing sedimentation throughout collision and orogeny. The low flexural rigidity of intra-arc basins makes them deep and, if preserved, potentially long records of arc and collisional tectonism. Backarc basins, in contrast, are typically subducted and their sediment either lost or preserved only as fragments in melange sequences. A substantial proportion of the sediment derived from

  6. Hydrological research basins and the environment

    NASA Astrophysics Data System (ADS)

    Alley, V. M.; Warmerdam, P. M. M.

    The role and relative importance of experimental and representative basins in pre-dieting anthropogenic effects on water resources and the environment was the goal of the International Conference on Hydrological Research Basins and the Environment, held in Wageningen, the Netherlands, September 24-28, 1990. About 70 persons, almost exclusively from Europe, attended the meeting, which was organized by the Committee of the European Network of Experimental and Representative Basins and the National Committee of the Netherlands for the International Hydrological Program of Unesco.During the conference, the 3rd General Meeting of the European Network of Experimental and Representative Basins was held. This network of basins, covering nine countries in Europe, organizes periodic meetings and tries to enhance the compatibility of observations and methods of analysis, and to implement research projects of common interest.

  7. China, JNOC start exploration in Tarim basin

    SciTech Connect

    Not Available

    1992-06-15

    This paper reports that a joint venture of China National Oil and Natural Gas Corp and Japan National Oil Corp (JNOC) has begun exploration in Northwest China's remote Tarim basin in Xinjiang Uygur Autonomous Region. That marks the first time China has allowed a foreign oil company to participate in exploration of the highly prospective basin. China pins much of its hope for the future on the Tarim basin as production declines from its older, mainstay fields in the east and offshore results have proved largely disappointing. The Chinese-Japanese combine began operations in the southwest part of the 560,000 sq km basin. The 200 member exploration team plans to complete a seismic survey covering 3,500 line km in the Kashi and Yecheng areas during the next 4 1/2 years. The survey follows a feasibility study that began last October covering 30,000 sq km in the basin.

  8. An alternative basin characteristic for use in estimating impervious area in urban Missouri basins

    USGS Publications Warehouse

    Southard, R.E.

    1986-01-01

    A previous regression analysis of flood peaks on urban basins in St. Louis County, Missouri, indicated that the basin characteristics of percentage of impervious area and drainage area were statistically significant for estimating the 2-, 5-, 10-, 25-, 50-. and 100-yr peak discharges at ungaged urban basins. In this statewide regression analysis of the urban basins for Missouri, an alternative basin characteristic called the percentage of developed area was evaluated. A regression analysis of the percentage of developed area (independent variable), resulted in a simple equation for computing percentage of impervious area. The percentage of developed area also was evaluated using flood-frequency data for 23 streamflow gaging stations, and the use of this variable was determined to be valid. Using nationwide data, an urban basin characteristic known as the basin development factor was determined to be valid for inclusion in urban regression equations for estimating flood flows. The basin development factor and the percentage of developed area were compared for use in regression equations to estimate peak flows of streams in Missouri. The equations with the basin development factor produced peak flow estimates with slightly smaller average standard errors of estimate than the equation with the percentage of developed area; however, this study indicates that there was not enough statistical or numerical difference to warrant using the basin development factor instead of the percentage of developed area in Missouri. The selection of a basin characteristic to describe the physical conditions of a drainage basin will depend not only on its contribution to accuracy of regression equations, but also on the ease of determining the characteristics; the percentage of developed area has this advantage. A correlation analysis was made by correlating drainage area to percentage of impervious area, the percentage of developed area, and the basin development factor. The results of

  9. Determination of the Relationship between Hydrologic Processes and Basin Morphometry - The Lamos Basin (Mersin, Turkey)

    NASA Astrophysics Data System (ADS)

    Yıldırım, Ümit; Güler, Cüneyt

    2016-04-01

    This study has been carried out to determine the relationship between hydrologic processes and basin morphometry in the Lamos Basin, which is located at the northern part of the Mersin (SE Turkey). The morphometric parameters of the basin was derived from the 1:25K scale topographic map sheets that were digitized using ArcGIS 9.3.1 geographic information system (GIS) software. Morphometric parameters considered in this study include basin area, basin length, basin perimeter length, stream order, stream number, stream length, mean stream length, basin relief, drainage density, stream frequency, drainage texture, bifurcation ratio, form factor, elongation ratio, overland flow length, relief ratio, and hypsometric integral. The results have shown that there are 1252 individual stream reaches with a total length of 1414.1 km in the Lamos basin, which covers an area of 1358 km2 and has a length of 103 km in the N-S direction. Furthermore, the basin has a medium drainage density of 1.04 1/km with a stream frequency and drainage texture values of 0.92 and 4.33, respectively. The basin can be classified as elongated because of the low values of elongation ratio (0.48) and form factor (0.12). The hypsometric integral of the basin (0.58) indicates that it is in the youth period and thus reasonably sensitive to erosion. The values of drainage texture, drainage density, and stream frequency indicate that the Lamos basin is moderately well drained, therefore overland flow in the basin is not expected to be so quick. Thus, in case of occurrence of sudden peak flows, sensitivity to the land sliding and erosion may increase further. As a result, it is suggested that human activities in the basin should be limited in areas in fairly close proximity to the present day stream network to prevent or reduce the risk to life and property.

  10. Plio-Pleistocene drainage development in an inverted sedimentary basin: Vera basin, Betic Cordillera, SE Spain

    NASA Astrophysics Data System (ADS)

    Stokes, Martin

    2008-08-01

    The Vera basin is one of a series of interconnected Neogene-Quaternary sedimentary basins located within the Internal Zone of the Betic Cordillera (southeast Spain). Since the Pliocene the Vera basin has been subjected to low uplift rates (11-21 m Ma - 1 ) and inverted via compressive tectonics that are related to the ongoing oblique collision between the African and Iberian plates. Within this paper the sedimentary and geomorphic response to basin inversion is explored. Sedimentary processes and environments are established for key stratigraphic units of the Pliocene/Plio-Pleistocene basin fill and Pleistocene dissectional landscape. These data are subsequently utilised to reconstruct an evolving basin palaeogeography. Fault and uplift data are employed to discuss the role of tectonically driven basin inversion for controlling the resultant palaeogeographic changes and associated patterns of drainage development. During the Early-Mid Pliocene the Vera basin was characterised by shallow marine shelf conditions (Cuevas Formation). A major palaeogeographic reorganisation occurred during the Mid-Late Pliocene. Strike-slip movement along the eastern basin margin, coupled with uplift and basin emergence created a protected, partially enclosed marine embayment that was conducive for Gilbert-type fan-delta sedimentation from fluvial inputs along the northern and eastern basin margins (Espíritu Santo Formation). The Vera basin then became fully continental and internally drained through the development of a consequent drainage network that formed following the withdrawal of marine conditions during the Late Pliocene to Early Pleistocene. Alluvial fans developed along the northern and western basin margins, grading to a bajada and terminating in a playa lake in central basin areas (Salmerón Formation). During the Early-Mid Pleistocene a switch from basin infilling to dissection took place, recorded by alluvial fan incision, a switch to braided river sedimentation and

  11. Preliminary evaluation of nominal drainage basin volume as a potentially useful morphometric parameter for small mountain basins

    SciTech Connect

    Keaton, J.R.

    1985-01-01

    Morphometric basin parameters have been used in quantitative geomorphic assessments since Horton's Hydrophysical Approach in 1945. A relationship between basin form and dominant process in small mountain basins in the western United States would be valuable for use in differentiating basins which produce deep-seated landslides from those which produce debris flows from debris slides. Drainage basin volume seems like it should be a parameter directly related to the dominant process operating in a basin. Consequently, it may be a potentially useful morphometric parameter. Nominal drainage basin volume is herein defined as the volume creates by the basin topography and linear projection of topographic contours across the basin. Incremental volume is computed from area encompassed by topographic contours and projections and the contour interval using the formula for the volume of the frustrum of a cone. Seven basins in the Wasatch Range and five in the Wasatch Plateau of Utah show strong relationship of log Basin Area to log Basin Volume (r/sup 2/ = 0.97). The relationship between average Basin Slope and log Basin Volume was poorer (r/sup 2/ = 0.78) than between Basin Slope and log Basin Area (r/sup 2/ = 0.87). This suggests that basin area may be a more useful parameter than basin volume, especially since area is more easily measured.

  12. Delaware basin/Central basin platform margin: The development of a subthrust deep-gas province in the Permian Basin

    SciTech Connect

    Purves, W.J. ); Ting, S.C. )

    1990-05-01

    A deep-gas-prone province was identified along the Delaware basin/Central Basin platform margin, a margin conventionally interpreted to be bounded by high-angle normal or high-angle reverse structures. Redefinition of the tectonic style between the Delaware basin and the adjacent platform resulted in the identification of this Delaware basin/Central Basin platform subthrust province and a giant prospect within it. Definition of a giant-sized gas prospect in northern Pecos County, Texas, revealed that portions of this margin may be characterized by shingled, low-angle, eastward-dipping, basement involved thrust faults. Interpretations suggest that hidden, subthrust footwall structures may trend discontinuously for greater than 100 mi along this structural margin. Subthrust footwall structures formed as basinal buttress points for the Central Basin platform to climb over the Delaware basin. In this area, structural relief of over 19,000 ft over a 10-mi width is believed due to stacking of low-angle thrust sheets. Seismic resolution of this subthrust margin has been complexed by allochtonous hanging-wall gravity-glide blocks and folds and by velocity changes in overlying syn- and posttectonic sediments associated with basin-to-shelf lithofacies changes. Statistical studies indicate that this deep-gas province has a play potential of greater than 10 tcf of gas, with individual prospect sizes exceeding 1 tcfg. The prospects defined along this trend are deep (approximately 20,000 ft) subthrust structural traps that are indigenously sourced and reservoired by dual-matrix porosity. Vitrinite supported maturation modeling suggests that these subthrust structures formed prior to catagenic conversion of the oldest source rocks to oil and later to gas. Tectonically fractured Ordovician Ellenburger and Devonian sediments are considered the principal reservoirs. Shales overlying reservoir intervals form vertical seals.

  13. Development of foreland basins around western Sichuan basin, and implications for mountain building in eastern Tibet

    NASA Astrophysics Data System (ADS)

    Chen, S.; Liu, M.

    2014-12-01

    The Sichuan basin is surrounded by the Tibetan Plateau to the west, and the Michang Shan and Daba Shan mountains to the north and northwest. Foreland basins have been developed along the western and northern margins of the Sichuan basin since Triassic, receiving sediments with significant along-strike variations. These sediment records provide useful insights into the history of mountain building around the Sichuan Basin. We have collected exploration well data from western Sichuan Basin. Using backstripping, we reconstructed the basement deformation history, which reflect sedimentary and tectonic loadings related to mountain building. We used a 3-D numerical modeling technique with multi-grid technique to simulate flexural deformation of the Sichuan Basin lithosphere, and to infer tectonic loading and mountain building along western and northern margins of the Sichuan Basin from the late Triassic to the Cenozoic. Our results suggest that the shortening of the Daba Shan and Michuan Shan orogens mainly occurred during the late Jurassic-Cretaceous. During Cenozoic, the tectonic loading mainly occurred along the southwestern margins of the Sichuan Basin, corresponding to the development of the Longmen Shan mountain belt. The tectonic loading of the northern Longmen Shan on the Sichuan Basin has been markedly reduced since the Cenozoic, evidenced by the lack of Cenozoic foreland basin development. This indicates mechanical decoupling between uplift of the Tibetan Plateau and the Sichuan Basin, consistent with the deep down-cutting of the Longmen Shan fault and predominantly strike-slip motion on the fault. The limited Cenozoic foreland basin development in the southwestern margin of the Sichuan Basin is consistent with localized high-angle thrusting of the southern Longmen Shan mountains. This work was supported by the National Natural Science Foundation of China (grants 41104046).

  14. Rocky Mountain Tertiary coal-basin models and their applicability to some world basins

    USGS Publications Warehouse

    Flores, R.M.

    1989-01-01

    Tertiary intermontane basins in the Rocky Mountain region of the United States contain large amounts of coal resources. The first major type of Tertiary coal basin is closed and lake-dominated, either mud-rich (e.g., North Park Basin, Colorado) or mud plus carbonate (e.g., Medicine Lodge Basin, Montana), which are both infilled by deltas. The second major type of Tertiary coal basin is open and characterized by a preponderance of sediments that were deposited by flow-through fluvial systems (e.g., Raton Basin, Colorado and New Mexico, and Powder River Basin, Wyoming and Montana). The setting for the formation of these coals varies with the type of basin sedimentation, paleotectonism, and paleoclimate. The mud-rich lake-dominated closed basin (transpressional paleotectonism and warm, humid paleoclimate), where infilled by sandy "Gilbert-type" deltas, contains thick coals (low ash and low sulfur) formed in swamps of the prograding fluvial systems. The mud- and carbonate-rich lake-dominated closed basin is infilled by carbonate precipitates plus coarse-grained fan deltas and fine-grained deltas. Here, thin coals (high ash and high sulfur) formed in swamps of the fine-grained deltas. The coarse-clastic, open basins (compressional paleotectonism and warm, paratropical paleoclimate) associated with flow-through fluvial systems contain moderately to anomalously thick coals (high to low ash and low sulfur) formed in swamps developed in intermittently abandoned portions of the fluvial systems. These coal development patterns from the Tertiary Rocky Mountain basins, although occurring in completely different paleotectonic settings, are similar to that found in the Tertiary, Cretaceous, and Permian intermontane coal basins in China, New Zealand, and India. ?? 1989.

  15. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2005-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  16. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2004-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  17. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2003-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  18. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services

    1999-09-30

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  19. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2000-09-28

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  20. Delaware Basin Monitoring Annual Report

    SciTech Connect

    Washington Regulatory and Environmental Services; Washington TRU Solutions LLC

    2002-09-21

    The Delaware Basin Drilling Surveillance Program (DBDSP) is designed to monitor drilling activities in the vicinity of the Waste Isolation Pilot Plant (WIPP). This program is based on Environmental Protection Agency (EPA) requirements. The EPA environmental standards for the management and disposal of transuranic (TRU) radioactive waste are codified in 40 CFR Part 191 (EPA 1993). Subparts B and C of the standard address the disposal of radioactive waste. The standard requires the Department of Energy (DOE) to demonstrate the expected performance of the disposal system using a probabilistic risk assessment or performance assessment (PA). This PA must show that the expected repository performance will not release radioactive material above limits set by the EPA's standard. This assessment must include the consideration of inadvertent drilling into the repository at some future time.

  1. Geological, mineralogical and geochemical characteristics of zeolite deposits associated with borates in the Bigadiç, Emet and Kirka Neogene lacustrine basins, western Turkey

    NASA Astrophysics Data System (ADS)

    Gündogdu, M. N.; Yalçin, H.; Temel, A.; Clauer, N.

    1996-09-01

    The Bigadiç, Emet and Kirka lacustrine basins of western Turkey may be considered as Tibet-type graben structures that were developed during the Miocene within the Izmir-Ankara suture zone complex. The volcanic-sedimentary successions of these basins are made up of mudstone, carbonate (limestone and dolomite) and detrital rocks, and also of crystal or vitric tuffs about 135 to 200 m thick. The Degirmenli (Bigadiç), Emirler (Bigadiç) Köpenez (Emet) and Karaören (Kirka) tuffs constituting the zeolite deposits are situated beneath four borate deposits (colemanite, ulexite, borax). The most abundant diagenetic silicate minerals are K- and Ca-clinoptilolites in the zeolite deposits, and Li-rich trioctahedral smectites (stevensite, saponite and hectorite) and K-feldspar in the borate deposits. In the Degirmenli, Emirler, Köpenez and Karaören deposits, the following diagenetic facies were developed from rhyolitic glasses rich in K and poor in Na: (glass+smectite), (K-clinoptilolite+opal-CT), (Ca-clinoptilolite+K-feldspar±analcime± quartz) and (K-feldspar+analcime+quartz). K-feldspar which is also rarely associated with phillipsite (Karaören) and heulandite (Degirmenli and Karaören), succeeds clinoptilolite and precedes analcime in these diagenetic facies where dioctahedral smectites, opal-CT and quartz are the latest minerals. No diagenetic transformations exist between clinoptilolite, K-feldspar and analcime that were formed directly from glass. The lateral facies distributions resulted from the differences in salinity and pH of pore water trapped during deposition of the tuffs, but vertical distributions in vitric tuffs seem to have been controlled by the glass/liquid ratio of the reacting system and the permeability or diffusion rate of alkali elements. The Bigadiç, Emet and Kirka zeolite deposits which were formed in saline basins rich in Ca and Mg ions, show similar chemical changes, i.e. loss of alkalis and gain in alkaline-earth elements that have taken

  2. Petroleum potential of the Reggane Basin, Algeria

    SciTech Connect

    Boudjema, A.; Hamel, M.; Mohamedi, A.; Lounissi, R. )

    1990-05-01

    The intracratonic Reggane basin is located on the Saharan platform, southwest of Algeria. The basin covers an area of approximately 140,000 km{sup 2}, extending between the Eglab shield in the south and the Ougarta ranges in the north. Although exploration started in the early 1950s, only a few wells were drilled in this basin. Gas was discovered with a number of oil shows. The sedimentary fill, mainly Paleozoic shales and sandstones, has a thickness exceeding 5,000 m in the central part of the basin. The reservoirs are Cambrian-Ordovician, Siegenian, Emsian, Tournaisian, and Visean sandstones with prospective petrophysical characteristics. Silurian Upper Devonian and, to a lesser extent Carboniferous shales are the main source rocks. An integrated study was done to assess the hydrocarbon potential of this basin. Tectonic evolution source rocks and reservoirs distribution maturation analyses followed by kinetic modeling, and hydrogeological conditions were studied. Results indicate that gas accumulations could be expected in the central and deeper part of the basin, and oil reservoirs could be discovered on the basin edge.

  3. Metabolic principles of river basin organization

    NASA Astrophysics Data System (ADS)

    Rodriguez-Iturbe, I.; Caylor, K. K.; Rinaldo, A.

    2011-12-01

    The metabolism of a river basin is defined as the set of processes through which the basin maintains its structure and responds to its environment. Green (or biotic) metabolism is measured via transpiration and blue (or abiotic) metabolism through runoff. A principle of equal metabolic rate per unit area throughout the basin structure is developed and tested in a river basin characterized by large heterogeneities in precipitation, vegetation, soil, and geomorphology. This principle is suggested to have profound implications for the spatial organization of river basin hydrologic dynamics, including the minimization of energy expenditure known to control the scale-invariant characteristics of river networks over several orders of magnitude. Empirically derived, remarkably constant rates of average transpiration per unit area through the basin structure lead to a power law for the probability distribution of transpiration from a randomly chosen subbasin. The average runoff per unit area, evaluated for subbasins of a wide range of topological magnitudes, is also shown to be remarkably constant independently of size. A similar result is found for the rainfall after accounting for canopy interception. Allometric scaling of metabolic rates with size, variously addressed in the biological literature and network theory under the label of Kleiber's law, is similarly derived. The empirical evidence suggests that river basin metabolic activity is linked with the spatial organization that takes place around the drainage network and therefore with the mechanisms responsible for the fractal geometry of the network, suggesting a new coevolutionary framework for biological, geomorphological, and hydrologic dynamics.

  4. Metabolic principles of river basin organization.

    PubMed

    Rodriguez-Iturbe, Ignacio; Caylor, Kelly K; Rinaldo, Andrea

    2011-07-19

    The metabolism of a river basin is defined as the set of processes through which the basin maintains its structure and responds to its environment. Green (or biotic) metabolism is measured via transpiration and blue (or abiotic) metabolism through runoff. A principle of equal metabolic rate per unit area throughout the basin structure is developed and tested in a river basin characterized by large heterogeneities in precipitation, vegetation, soil, and geomorphology. This principle is suggested to have profound implications for the spatial organization of river basin hydrologic dynamics, including the minimization of energy expenditure known to control the scale-invariant characteristics of river networks over several orders of magnitude. Empirically derived, remarkably constant rates of average transpiration per unit area through the basin structure lead to a power law for the probability distribution of transpiration from a randomly chosen subbasin. The average runoff per unit area, evaluated for subbasins of a wide range of topological magnitudes, is also shown to be remarkably constant independently of size. A similar result is found for the rainfall after accounting for canopy interception. Allometric scaling of metabolic rates with size, variously addressed in the biological literature and network theory under the label of Kleiber's law, is similarly derived. The empirical evidence suggests that river basin metabolic activity is linked with the spatial organization that takes place around the drainage network and therefore with the mechanisms responsible for the fractal geometry of the network, suggesting a new coevolutionary framework for biological, geomorphological, and hydrologic dynamics. PMID:21670259

  5. Evaluation of Ordos Basin in China

    SciTech Connect

    Zhou, J.G.

    1996-06-01

    Ordos basin lies in the north-central China, in a compression tectonic regime, with an area of approximately 250,000 km{sup 2}, including several pay zones ranging from Cambrian to Jurassic. It is one of the earliest-formed marine to continental-superimposed basin in China, characterized by Proterozoic basin-marginal rifling and Lower-Paleozoic carbonate platform development followed by western thrusting and foreland depression during Mesozoic. It underwent several tectonic movements and is covered by several structural layers, with many play types developed, primarily thrust and anticlinal plays in the west, and differential compaction (river-channel sand lens) or drape as well as buried hill plays in the basin center and east. Ordos basin is a prolific gas basin with an estimated resource potential of gas 656,091 billion m{sup 3} in the Paleozoic strata and oil 2.0474 billion tons in the Mesozoic strata. In 1986, in the western part of the basin, the well Tian-1 on the Tianchi structure tested gas at a rate of 16 x 10{sup 4} m{sup 3}/d (about 5.6496 MCF per day). By year-end 1991, only 26 wells had been drilled in the Jingbian to Hengshan areas (northeastern part of the basin), but 16 of them flowed commercial gas, ranging from 3.2 x 10{sup 4} m{sup 3}/d to 126 x 10{sup 4} m{sup 3}/d. However, the gas pipe just starts budding. Therefore, there will be a lot of gas yet to find, and the most critical factor for petroleum potential of each local structure or play in this basin is the reservoir development.

  6. Groundwater Mounding Beneath Stormwater Infiltration Basins

    NASA Astrophysics Data System (ADS)

    Nimmer, M.; Thompson, A. M.; Misra, D.

    2007-12-01

    An accurate understanding of groundwater mound formation is important in the proper design of stormwater infiltration basins since these basins are often required to recharge a portion of pre-development infiltration volume. Mound formation due to localized recharge may reduce the infiltration rate of the basin and the ability of the soil to filter pollutants. The goal of this research was to understand groundwater mounding and the potential for contaminant transport resulting from recharge beneath stormwater infiltration basins. A 0.10 ha infiltration basin serving a 9.4 ha residential subdivision in Oconomowoc, Wisconsin was used in this study. Subsurface conditions included sand and gravel material and a groundwater table at 2.3 m below grade. Three storm events, 4.9 cm, 2.8 cm, and 4.3 cm, between August 2006 and April 2007 were modeled using the two-dimensional numerical model HYDRUS. The calibrated model was used to evaluate hypothetical basin operation scenarios for various basin sizes, soil types, ponding depths, and water table depths. The groundwater mound intersected the basin floor in most scenarios with loamy sand and sandy loam soils, an unsaturated thickness of 1.52 m, and a ponding depth of 0.61 m. No groundwater table response was observed with ponding depths less than 0.31 m with an unsaturated zone thickness of 6.09 m. The mound height was most sensitive to hydraulic conductivity and unsaturated zone thickness. A 7.6 cm sediment layer delayed the time to reach maximum mound height, but had a minimal effect on the magnitude of the mound. Mound heights increased as infiltration basin size increased.

  7. Stratigraphy of the Caloris basin, Mercury

    USGS Publications Warehouse

    McCauley, J.F.; Guest, J.E.; Schaber, G.G.; Trask, N.J.; Greeley, R.

    1981-01-01

    The 1300-km-diameter Caloris impact basin is surrounded by well-defined ejecta units that can be recognized from more than 1000 km, radially outward from the basin edge. A formal rock stratigraphic nomenclature is proposed for the Caloris ejecta units, which are collectively called the Caloris Group. Each of the individual formations within the Group are described and compared to similar rock units associated with the lunar Imbrium and Orientale basins. A crater degradation chronology, linked the the Caloris event, is also proposed to assist in stratigraphic correlation on a Mercury-wide basis. ?? 1981.

  8. Deep seismic expression of a foreland basin: Taranaki basin, New Zealand

    NASA Astrophysics Data System (ADS)

    Stern, T. A.; Davey, F. J.

    1990-10-01

    A deep seismic-reflection profile shot across the South Taranaki basin, New Zealand, indicates up to 10 km of crustal thickening beneath the Taranaki boundary fault at the eastern margin of the basin. The seismic data also show a broad flexure of the entire crust, the locus of the flexure-producing load appearing to be in the vicinity of the Taranaki boundary fault. Such crustal thickening and flexure suggest a compressional, foreland-basin style of late Cenozoic development rather than the rift-graben origin previously assumed. This change in interpretation for the South Taranaki basin has implications for evaluating the thermal history of the basin and its possibilities for hydrocarbon prospects. The study therefore demonstrates the value of deep seismic exploration of a hydrocarbon-bearing basin in its early stage of exploration.

  9. Discharge forecasts in mountain basins based on satellite snow cover mapping. [Dinwoody Creek Basin, Wyoming and the Dischma Basin, Switzerland

    NASA Technical Reports Server (NTRS)

    Martinec, J.; Rango, A. (Principal Investigator)

    1980-01-01

    The author has identified the following significant results. A snow runoff model developed for European mountain basins was used with LANDSAT imagery and air temperature data to simulate runoff in the Rocky Mountains under conditions of large elevation range and moderate cloud cover (cloud cover of 40% or less during LANDSAT passes 70% of the time during a snowmelt season). Favorable results were obtained for basins with area not exceeding serval hundred square kilometers and with a significant component of subsurface runoff.

  10. Geology of the Merit-Pila Coal Basin, Sarawak, Malaysia

    SciTech Connect

    Johari, D.; Abdullah, M.F. )

    1994-07-01

    This poster presentation focuses on the Tertiary Merit-Pila coal basin located in central Sarawak, Malaysia, with emphasis on the geology of the basin. The presentation includes (1) a map of the Tertiary coal basins of Malaysia, and (2) explanations on the geology of Merit-Pila coal basin by means of (a) a geological map, (b) geological sections, (c) a lithostratigraphic section of a typical area of the coal basin, (d) rock and coal samples from the basin, and (e) a figure describing the geological concept of the development of the coal basin. The poster session is designed to give a general picture of a typical Tertiary coal basin of Malaysia. The Merit-Pila coal basin is the best known coal basin and hosts more than 300 million MT of coal, the largest known coal resource in the country.