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Sample records for high-resolution ct scans

  1. Auditory profile and high resolution CT scan in autism spectrum disorders children with auditory hypersensitivity.

    PubMed

    Thabet, Elsaeid M; Zaghloul, Hesham S

    2013-08-01

    Autism is the third most common developmental disorder, following mental retardationand cerebral palsy. ASD children have been described more often as beingpreoccupied with or agitated by noise. The aim of this study was to evaluate theprevalence and clinical significance of semicircular canal dehiscence detected on CTimages in ASD children with intolerance to loud sounds in an attempt to find ananatomical correlate with hyperacusis.14 ASD children with auditory hypersensitivity and 15 ASD children without auditoryhypersensitivity as control group age and gender matched were submitted to historytaking, otological examination, tympanometry and acoustic reflex thresholdmeasurement. ABR was done to validate normal peripheral hearing and integrity ofauditory brain stem pathway. High resolution CT scan petrous and temporal boneimaging was performed to all participated children. All participants had normal hearingsensitivity in ABR testing. Absolute ABR peak waves of I and III showed no statisticallysignificant difference between the two groups, while absolute wave V peak andinterpeak latencies I-V and III-V were shorter in duration in study group whencompared to the control group. CT scans revealed SSCD in 4 out of 14 of the studygroup (29%), the dehiscence was bilateral in one patient and unilateral in threepatients. None of control group showed SSCD. In conclusion, we have reportedevidence that apparent hypersensitivity to auditory stimuli (short conduction time in ABR) despite the normal physiological measures in ASD children with auditoryhypersensitivity can provide a clinical clue of a possible SSCD. PMID:23580033

  2. High Resolution Scanning Reflectarray Antenna

    NASA Technical Reports Server (NTRS)

    Romanofsky, Robert R. (Inventor); Miranda, Felix A. (Inventor)

    2000-01-01

    The present invention provides a High Resolution Scanning Reflectarray Antenna (HRSRA) for the purpose of tracking ground terminals and space craft communication applications. The present invention provides an alternative to using gimbaled parabolic dish antennas and direct radiating phased arrays. When compared to a gimbaled parabolic dish, the HRSRA offers the advantages of vibration free steering without incurring appreciable cost or prime power penalties. In addition, it offers full beam steering at a fraction of the cost of direct radiating arrays and is more efficient.

  3. High resolution extremity CT for biomechanics modeling

    SciTech Connect

    Ashby, A.E.; Brand, H.; Hollerbach, K.; Logan, C.M.; Martz, H.E.

    1995-09-23

    With the advent of ever more powerful computing and finite element analysis (FEA) capabilities, the bone and joint geometry detail available from either commercial surface definitions or from medical CT scans is inadequate. For dynamic FEA modeling of joints, precise articular contours are necessary to get appropriate contact definition. In this project, a fresh cadaver extremity was suspended in parafin in a lucite cylinder and then scanned with an industrial CT system to generate a high resolution data set for use in biomechanics modeling.

  4. CT Scans

    MedlinePlus

    ... cross-sectional pictures of your body. Doctors use CT scans to look for Broken bones Cancers Blood clots Signs of heart disease Internal bleeding During a CT scan, you lie still on a table. The table ...

  5. Petrous apex mucocele: high resolution CT.

    PubMed

    Memis, A; Memis, A; Alper, H; Calli, C; Ozer, H; Ozdamar, N

    1994-11-01

    Mucocele of the petrous apex is very rare, only three cases having been reported. Since this area is inaccessible to direct examination, imaging, preferably high resolution computed tomography (HR CT) is essential. We report a case showing an eroding, non enhancing mass with sharp, lobulated contours, within the petrous apex. The presence of a large air cell on the opposite side suggested a mucocele. PMID:7862284

  6. High-resolution scanning hall probe microscopy

    NASA Astrophysics Data System (ADS)

    Hicks, Clifford; Luan, Lan; Hendrik Bluhm, J.; Moler, Kathryn; Guikema, Janice; Zeldov, Eli; Shtrikman, Hadas

    2006-03-01

    Scanning hall sensors can be used to directly image magnetic fields at surfaces. They offer high resolution, high sensitivity, operability over a broad temperature range, and linearity. We have fabricated hall sensors on GaAs / Al0.35Ga0.65As and GaAs / Al0.3Ga0.7As heterostructures containing 2D electron gases 40, 39 and 140nm beneath the surface. The sensitive areas of our probes range from microns to 85nm on a side. We report on the field sensitivities of probes of various sizes and their spatial resolution in a scanning configuration.

  7. Reconstructing high-resolution climate using CT scanning of unsectioned stalagmites: A case study identifying the mid-Holocene onset of the Mediterranean climate in southern Iberia

    NASA Astrophysics Data System (ADS)

    Walczak, Izabela W.; Baldini, James U. L.; Baldini, Lisa M.; McDermott, Frank; Marsden, Stuart; Standish, Christopher D.; Richards, David A.; Andreo, Bartolomé; Slater, Jonathan

    2015-11-01

    The forcing mechanisms responsible for the mid-Holocene onset of the Mediterranean-type climate in south-western Europe are currently unclear, but understanding these is critical for accurate climate projections under future greenhouse gas warming. Additionally, regional studies that present conflicting patterns for the onset and advancement of Mediterranean climatic conditions complicate definitively ascribing causality. Here, we use a new high resolution stalagmite density record obtained non-destructively using Computed Tomography (CT scanning) to reconstruct southern Iberian climate between 9.3 and 2.9 ka BP. We suggest that stalagmite density can be used as a water-excess proxy, with lower densities associated with more variable drip rates, possibly reflecting increased seasonality consistent with expectations from previous studies of speleothem textures and crystal fabrics. Our results reveal an early Holocene humid interval and mid-Holocene year-round aridity that preceded the onset of Mediterranean climate at 5.3 ka BP in southern Iberia. Using this new dataset combined with previously published results, we link the gradual advancement of the Mediterranean climate to the southward migration of the North Atlantic Subtropical High induced by an orbitally driven decrease in Northern Hemisphere insolation. Future anthropogenic warming could result in a reversal of this trend, a northward migration of the North Atlantic Subtropical High, and a return to year-round aridity in south-western Europe.

  8. High-resolution scanning hall probe microscopy

    NASA Astrophysics Data System (ADS)

    Hicks, C. W.; Guikema, J. W.; Zeldov, E.

    2005-03-01

    Scanning hall sensors can be used to directly image magnetic fields at surfaces. They offer high resolution, high sensitivity, operability from cryogenic to room temperature, and linearity. We have fabricated hall sensors on GaAs / Al0.35Ga0.65As and GaAs / Al0.3Ga0.7As heterostructures, one containing a 2D electron gas 40 nanometers below the surface and another 140nm below the surface, as well as an In0.5Al0.5As / GaSb / AlSb / InAs heterostructure containing a 2DEG 21nm below the surface. The sensitive areas of our probes range from microns to 60nm on a side. We report on the field sensitivities of the probes and their spatial resolution in a scanning configuration.

  9. Ring artifact correction for high-resolution micro CT.

    PubMed

    Kyriakou, Yiannis; Prell, Daniel; Kalender, Willi A

    2009-09-01

    In high-resolution micro CT using flat detectors (FD), imperfect or defect detector elements may cause concentric-ring artifacts due to their continuous over- or underestimation of attenuation values, which often disturb image quality. We here present a dedicated image-based ring artifact correction method for high-resolution micro CT, based on median filtering of the reconstructed image and working on a transformed version of the reconstructed images in polar coordinates. This post-processing method reduced ring artifacts in the reconstructed images and improved image quality for phantom and in in vivo scans. Noise and artifacts were reduced both in transversal and in multi-planar reformations along the longitudinal axis. PMID:19661571

  10. Head CT scan

    MedlinePlus

    Brain CT; Cranial CT; CT scan - skull; CT scan - head; CT scan - orbits; CT scan - sinuses; Computed tomography - cranial ... or other growth (mass) Cerebral atrophy (loss of brain tissue) ... with the hearing nerve Stroke or transient ischemic attack (TIA)

  11. High resolution obtained by photoelectric scanning techniques.

    NASA Technical Reports Server (NTRS)

    Hall, J. S.

    1972-01-01

    Several applications of linear scanning of different types of objects are described; examples include double stars, satellites, the Red Spot of Jupiter and a landing site on the moon. This technique allows one to achieve a gain of about an order of magnitude in resolution over conventional photoelectric techniques; it is also effective in providing sufficient data for removing background effects and for the application of deconvolution procedures. Brief consideration is given to two-dimensional scanning, either at the telescope or of electronographic images in the laboratory. It is suggested that some of the techniques described should be given serious consideration for space applications.

  12. CT scan

    MedlinePlus

    CAT scan; Computed axial tomography scan; Computed tomography scan ... Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, et al. eds. Grainger & Allison's Diagnostic Radiology: A Textbook of Medical Imaging . 6th ...

  13. CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. Once you are inside the scanner, the machine's x-ray beam rotates around you. Modern spiral scanners can perform the exam without stopping. A computer ...

  14. High resolution X-ray micro-CT of ultra-thin wall space components

    NASA Astrophysics Data System (ADS)

    Roth, D. J.; Rauser, R. W.; Bowman, R. R.; Bonacuse, P. J.; Martin, R. E.; Locci, I. E.; Kelley, M.

    2013-01-01

    A high resolution micro-CT system has been assembled and is being used to provide optimal characterization for ultra-thin wall space components. The Glenn Research Center NDE Sciences Team, using this CT system, has assumed the role of inspection vendor for the Advanced Stirling Convertor (ASC) project at NASA. This article will discuss many aspects of the development of the CT scanning for this type of component, including CT system overview; inspection requirements; process development, software utilized and developed to visualize, process, and analyze results; calibration sample development; results on actual samples; correlation with optical/SEM characterization; CT modeling; and development of automatic flaw recognition software.

  15. Heart CT scan

    MedlinePlus

    CAT scan - heart; Computed axial tomography scan - heart; Computed tomography scan - heart; Calcium scoring; Multi-detector CT scan - heart; Electron beam computed tomography - heart; Agaston score; Coronary calcium scan

  16. LandScan 2013 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2014-07-01

    The LandScan data set is a worldwide population database compiled on a 30"x30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on land cover, slope, road proximity, high-resolution imagery, and other data sets. The LandScan data set was developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient populations at risk.

  17. Arm CT scan

    MedlinePlus

    CAT scan - arm; Computed axial tomography scan - arm; Computed tomography scan - arm; CT scan - arm ... Mosby; 2013:chap 57. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  18. Sinus CT scan

    MedlinePlus

    CAT scan - sinus; Computed axial tomography scan - sinus; Computed tomography scan - sinus; CT scan - sinus ... 2014:chap 67. Shaw AS, Dixon AK. Multidetector computed tomography. In: Adam A, Dixon AK, eds. Grainger & Allison's ...

  19. Leg CT scan

    MedlinePlus

    CAT scan - leg; Computed axial tomography scan - leg; Computed tomography scan - leg; CT scan - leg ... Saunders; 2012:chap 11. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  20. Pelvic CT scan

    MedlinePlus

    CAT scan - pelvis; Computed axial tomography scan - pelvis; Computed tomography scan - pelvis; CT scan - pelvis ... gov/pubmed/18381118 . Shaw AS, Dixon AK. Multidetector computed tomography. In: Grainger RC, Allison D, Adam, Dixon AK, ...

  1. Shoulder CT scan

    MedlinePlus

    CAT scan - shoulder; Computed axial tomography scan - shoulder; Computed tomography scan - shoulder; CT scan - shoulder ... Mosby; 2012:chap 57. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  2. Orbit CT scan

    MedlinePlus

    ... results may mean: Bleeding Broken eye socket bone Graves disease Infection Tumor Risks CT scans and other x- ... Livingstone; 2014:chap 66. Read More CT scan Graves disease Tumor Update Date 1/18/2015 Updated by: ...

  3. Airborne laser scanning for high-resolution mapping of Antarctica

    NASA Astrophysics Data System (ADS)

    Csatho, Bea; Schenk, Toni; Krabill, William; Wilson, Terry; Lyons, William; McKenzie, Garry; Hallam, Cheryl; Manizade, Serdar; Paulsen, Timothy

    In order to evaluate the potential of airborne laser scanning for topographic mapping in Antarctica and to establish calibration/validation sites for NASA's Ice, Cloud and land Elevation Satellite (ICESat) altimeter mission, NASA, the U.S. National Science Foundation (NSF), and the U.S. Geological Survey (USGS) joined forces to collect high-resolution airborne laser scanning data.In a two-week campaign during the 2001-2002 austral summer, NASA's Airborne Topographic Mapper (ATM) system was used to collect data over several sites in the McMurdo Sound area of Antarctica (Figure 1a). From the recorded signals, NASA computed laser points and The Ohio State University (OSU) completed the elaborate computation/verification of high-resolution Digital Elevation Models (DEMs) in 2003. This article reports about the DEM generation and some exemplary results from scientists using the geomorphologic information from the DEMs during the 2003-2004 field season.

  4. High-resolution CT of temporal bone trauma

    SciTech Connect

    Holland, B.A.; Brant-Zawadzki, M.

    1984-08-01

    Computed tomographic (CT) finding in 18 patients with temporal bone trauma were reviewed. Eight patients suffered longitudinal fractures of the petrous bone, which were associated with ossicular dislocation in two patients. Transverse fractures were detected in six patients, with a contralateral mastoid fracture in one patient. In four patients, the fractures were restricted to the mastoid region. Of the 14 patients in whom adequate neurologic evaluation was available, seven had a permanent facial nerve or hearing deficit while five suffered at least a transient neurologic deficit related to the temporal bone trauma. Routine head CT (10 mm sections) demonstrated only eight of 19 petrous bone injuries. Evidence of brain trauma or extra-axial hemotoma was seen in 12 patients. In 13 cases, high-resolution CT was also performed, demonstrating temporal bone injuries in all. This latter technique allows rapid and detailed evaluation of temporal bone trauma.

  5. Tuning and scanning control system for high resolution alexandrite lasers

    NASA Technical Reports Server (NTRS)

    Smith, James C.; Schwemmer, Geary K.

    1988-01-01

    An alexandrite laser is spectrally narrowed and tuned by the use of three optical elements. Each element provides a successively higher degree of spectral resolution. The digitally controlled tuning and scanning control servo system simultaneously positions all three optical elements to provide continuous high resolution laser spectral tuning. The user may select manual, single, or continuous modes of automated scanning of ranges up to 3.00/cm and at scan rates up to 3.85/cm/min. Scanning over an extended range of up to 9.999/cm may be achieved if the highest resolution optic is removed from the system. The control system is also capable of being remotely operated by another computer or controller via standard RS-232 serial data link.

  6. Lumbar spine CT scan

    MedlinePlus

    CAT scan - lumbar spine; Computed axial tomography scan - lumbar spine; Computed tomography scan - lumbar spine; CT - lower back ... stopping.) A computer creates separate images of the spine area, called slices. These images can be stored, ...

  7. High Resolution Scanning Electron Microscopy of Cells Using Dielectrophoresis

    PubMed Central

    Tang, Shi-Yang; Zhang, Wei; Soffe, Rebecca; Nahavandi, Sofia; Shukla, Ravi; Khoshmanesh, Khashayar

    2014-01-01

    Ultrastructural analysis of cells can reveal valuable information about their morphological, physiological, and biochemical characteristics. Scanning electron microscopy (SEM) has been widely used to provide high-resolution images from the surface of biological samples. However, samples need to be dehydrated and coated with conductive materials for SEM imaging. Besides, immobilizing non-adherent cells during processing and analysis is challenging and requires complex fixation protocols. In this work, we developed a novel dielectrophoresis based microfluidic platform for interfacing non-adherent cells with high-resolution SEM at low vacuum mode. The system enables rapid immobilization and dehydration of samples without deposition of chemical residues over the cell surface. Moreover, it enables the on-chip chemical stimulation and fixation of immobilized cells with minimum dislodgement. These advantages were demonstrated for comparing the morphological changes of non-budding and budding yeast cells following Lyticase treatment. PMID:25089528

  8. The theory and practice of high resolution scanning electron microscopy

    SciTech Connect

    Joy, D.C. Oak Ridge National Lab., TN )

    1990-01-01

    Recent advances in instrumentation have produced the first commercial examples of what can justifiably be called High Resolution Scanning Electron Microscopes. The key components of such instruments are a cold field emission gun, a small-gap immersion probe-forming lens, and a clean dry-pumped vacuum. The performance of these microscopes is characterized by several major features including a spatial resolution, in secondary electron mode on solid specimens, which can exceed 1nm on a routine basis; an incident probe current density of the order of 10{sup 6} amps/cm{sup 2}; and the ability to maintain these levels of performance over an accelerating voltage range of from 1 to 30keV. This combination of high resolution, high probe current, low contamination and flexible electron-optical conditions provides many new opportunitites for the application of the SEM to materials science, physics, and the life sciences. 27 refs., 14 figs.

  9. High-Resolution, Wide-Field-of-View Scanning Telescope

    NASA Technical Reports Server (NTRS)

    Sepulveda, Cesar; Wilson, Robert; Seshadri, Suresh

    2007-01-01

    A proposed telescope would afford high resolution over a narrow field of view (<0.10 ) while scanning over a total field of view nominally 16 wide without need to slew the entire massive telescope structure. The telescope design enables resolution of a 1-m-wide object in a 50- km-wide area of the surface of the Earth as part of a 200-km-wide area field of view monitored from an orbit at an altitude of 700 km. The conceptual design of this telescope could also be adapted to other applications both terrestrial and extraterrestrial in which there are requirements for telescopes that afford both wide- and narrow-field capabilities. In the proposed telescope, the scanning would be effected according to a principle similar to that of the Arecibo radio telescope, in which the primary mirror is stationary with respect to the ground and a receiver is moved across the focal surface of the primary mirror. The proposed telescope would comprise (1) a large spherical primary mirror that would afford high resolution over a narrow field of view and (2) a small displaceable optical relay segment that would be pivoted about the center of an aperture stop to effect the required scanning (see figure). Taken together, both comprise a scanning narrow-angle telescope that does not require slewing the telescope structure. In normal operation, the massive telescope structure would stare at a fixed location on the ground. The inner moveable relay optic would be pivoted to scan the narrower field of view over the wider one, making it possible to retain a fixed telescope orientation, while obtaining high-resolution images over multiple target areas during an interval of 3 to 4 minutes in the intended orbit. The pivoting relay segment of the narrow-angle telescope would include refractive and reflective optical elements, including two aspherical mirrors, to counteract the spherical aberration of the primary mirror. Overall, the combination of the primary mirror and the smaller relay optic

  10. CT scan (image)

    MedlinePlus

    CT stands for computerized tomography. In this procedure, a thin X-ray beam is rotated around the ... D image of a section through the body. CT scans are very detailed and provide excellent information ...

  11. High Resolution X-Ray Micro-CT of Ultra-Thin Wall Space Components

    NASA Technical Reports Server (NTRS)

    Roth, Don J.; Rauser, R. W.; Bowman, Randy R.; Bonacuse, Peter; Martin, Richard E.; Locci, I. E.; Kelley, M.

    2012-01-01

    A high resolution micro-CT system has been assembled and is being used to provide optimal characterization for ultra-thin wall space components. The Glenn Research Center NDE Sciences Team, using this CT system, has assumed the role of inspection vendor for the Advanced Stirling Convertor (ASC) project at NASA. This article will discuss many aspects of the development of the CT scanning for this type of component, including CT system overview; inspection requirements; process development, software utilized and developed to visualize, process, and analyze results; calibration sample development; results on actual samples; correlation with optical/SEM characterization; CT modeling; and development of automatic flaw recognition software. Keywords: Nondestructive Evaluation, NDE, Computed Tomography, Imaging, X-ray, Metallic Components, Thin Wall Inspection

  12. Low-dose high-resolution CT of lung parenchyma

    SciTech Connect

    Zwirewich, C.V.; Mayo, J.R.; Mueller, N.L. )

    1991-08-01

    To evaluate the efficacy of low-dose high-resolution computed tomography (HRCT) in the assessment of lung parenchyma, three observers reviewed the scans of 31 patients. The 1.5-mm-collimation, 2-second, 120-kVp scans were obtained at 20 and 200 mA at selected identical levels in the chest. The observers evaluated the visualization of normal pulmonary anatomy, various parenchymal abnormalities and their distribution, and artifacts. The low-dose and conventional scans were equivalent in the evaluation of vessels, lobar and segmental bronchi, and anatomy of secondary pulmonary lobules, and in characterizing the extent and distribution of reticulation, honeycomb cysts, and thickened interlobular septa. The low-dose technique failed to demonstrate ground-glass opacity in two of 10 cases (20%) and emphysema in one of nine cases (11%), in which they were evident but subtle on the high-dose scans. These differences were not statistically significant. Linear streak artifact was more prominent on images acquired with the low-dose technique, but the two techniques were judged equally diagnostic in 97% of cases. The authors conclude that HRCT images acquired at 20 mA yield anatomic information equivalent to that obtained with 200-mA scans in the majority of patients, without significant loss of spatial resolution or image degradation due to linear streak artifact.

  13. Stapes model using high-resolution μCT

    NASA Astrophysics Data System (ADS)

    Baek, Jong Dae; Puria, Sunil

    2008-02-01

    Understanding the biomechanics of the middle ear is important for surgical reconstructions. As the output of the middle ear, the stapes plays a key role in transferring acoustic vibrations to the cochlea. In order to develop anatomically-based mathematical models, which are needed to improve our understanding of stapes dynamics, detailed morphometry of the stapes is required. High-resolution micro-CT imaging techniques were used to generate three-dimensional reconstructions of cadaveric temporal bones from 5 species commonly used in experimental middle ear research: the chinchilla, human (relatively mid-frequency hearing limit), cat, guinea pig, and gerbil (relatively high-frequency hearing limit). From the standard discretizations of micro-CT images and corresponding 3-D volume reconstructions, the centers of mass, principle axes, stapes head areas and stapes footplate areas were calculated. Mechanical relationships were estimated between the capitulum area and the footplate area and inter-species comparisons were performed between the cross-sectional shapes of the anterior and posterior crura. Quantitative dynamic properties were estimated from the rigid body motion calculations. The parameters estimated in this study will be useful for building biocomputational models of the stapes for a variety of species.

  14. High-resolution fully vectorial scanning Kerr magnetometer.

    PubMed

    Flajšman, Lukáš; Urbánek, Michal; Křižáková, Viola; Vaňatka, Marek; Turčan, Igor; Šikola, Tomáš

    2016-05-01

    We report on the development of a high-resolution scanning magnetometer, which fully exploits the vectorial nature of the magneto-optical Kerr effect. The three-dimensional nature of magnetization is at the basis of many micromagnetic phenomena and from these data, we can fully characterize magnetization processes of nanostructures in static and dynamic regimes. Our scanning Kerr magnetometer uses a high numerical aperture microscope objective where the incident light beam can be deterministically deviated from the objective symmetry axis, therefore, both in-plane (via the longitudinal Kerr effect) and out-of-plane (via the polar Kerr effect) components of the magnetization vector may be detected. These components are then separated by exploiting the symmetries of the polar and longitudinal Kerr effects. From four consecutive measurements, we are able to directly obtain the three orthogonal components of the magnetization vector with a resolution of 600 nm. Performance of the apparatus is demonstrated by a measurement of 3D magnetization vector maps showing out-of-plane domains and in-plane domain walls in an yttrium-iron-garnet film and on a study of magnetization reversal in a 4-μm-wide magnetic disk. PMID:27250432

  15. High-resolution fully vectorial scanning Kerr magnetometer

    NASA Astrophysics Data System (ADS)

    Flajšman, Lukáš; Urbánek, Michal; Křižáková, Viola; VaÅatka, Marek; Turčan, Igor; Šikola, Tomáš

    2016-05-01

    We report on the development of a high-resolution scanning magnetometer, which fully exploits the vectorial nature of the magneto-optical Kerr effect. The three-dimensional nature of magnetization is at the basis of many micromagnetic phenomena and from these data, we can fully characterize magnetization processes of nanostructures in static and dynamic regimes. Our scanning Kerr magnetometer uses a high numerical aperture microscope objective where the incident light beam can be deterministically deviated from the objective symmetry axis, therefore, both in-plane (via the longitudinal Kerr effect) and out-of-plane (via the polar Kerr effect) components of the magnetization vector may be detected. These components are then separated by exploiting the symmetries of the polar and longitudinal Kerr effects. From four consecutive measurements, we are able to directly obtain the three orthogonal components of the magnetization vector with a resolution of 600 nm. Performance of the apparatus is demonstrated by a measurement of 3D magnetization vector maps showing out-of-plane domains and in-plane domain walls in an yttrium-iron-garnet film and on a study of magnetization reversal in a 4-μm-wide magnetic disk.

  16. [High resolution scanning electron microscopy of isolated outer hair cells].

    PubMed

    Koitschev, A; Müller, H

    1996-11-01

    Isolated hair cell preparations have gained wide acceptance as a model for studying physiological and molecular properties of the sensory cells involved in the hearing process. Ultrastructural details, such as stereocilia links, lateral membrane substructure or synaptic links are of crucial importance for normal sensory transduction. For this reason, we developed a high-resolution scanning electron microscopy (SEM) procedure to study the surface of isolated hair cells. Cells were mechanically and/or enzymatically separated, isolated and immobilized on cover slips by alcian blue and fixed by 2% glutardialdehyde or 1% OsO4. After dehydration, preparations were critical point-dried and sputter-coated with gold-palladium (2-4 nm). Up to 5 nm resolution was achieved. Optimal fixation kept the cells in their typical cylindrical forms. Preservation of the stereocilia and the apical plates of the outer hair cells depended strongly on the fixation process. Tip- and side-links were observed only sporadically because of the aggressive preparation procedure. The lateral plasma membranes of the cell bodies showed regular granular structures of 5-7 nm diameter at maximal magnification. The granular structure of the cell membrane seemed to correspond to putative transmembrane proteins believed to generate membrane-based motility. The remnants of the nerve endings and/or supporting cells usually covered the cell base. The preservation of the cells was better when enzymatic isolation was omitted. The technique used allowed for high resolution ultrastructural examination of isolated hair cells and, when combined with immunological labeling, may permit the identification of proteins at a molecular level. PMID:9064297

  17. Pediatric CT Scans

    Cancer.gov

    The Radiation Epidemiology Branch and collaborators have initiated a retrospective cohort study to evaluate the relationship between radiation exposure from CT scans conducted during childhood and adolescence and the subsequent development of cancer.

  18. Chest CT Scan

    MedlinePlus

    ... pictures to create a very detailed, three-dimensional (3D) model of organs. Sometimes, a substance called contrast dye is injected into a vein in your arm for the CT scan. This substance highlights areas in your chest, which ...

  19. High-Resolution Underwater Mapping Using Side-Scan Sonar.

    PubMed

    Burguera, Antoni; Oliver, Gabriel

    2016-01-01

    The goal of this study is to generate high-resolution sea floor maps using a Side-Scan Sonar(SSS). This is achieved by explicitly taking into account the SSS operation as follows. First, the raw sensor data is corrected by means of a physics-based SSS model. Second, the data is projected to the sea-floor. The errors involved in this projection are thoroughfully analysed. Third, a probabilistic SSS model is defined and used to estimate the probability of each sea-floor region to be observed. This probabilistic information is then used to weight the contribution of each SSS measurement to the map. Because of these models, arbitrary map resolutions can be achieved, even beyond the sensor resolution. Finally, a geometric map building method is presented and combined with the probabilistic approach. The resulting map is composed of two layers. The echo intensity layer holds the most likely echo intensities at each point in the sea-floor. The probabilistic layer contains information about how confident can the user or the higher control layers be about the echo intensity layer data. Experimental results have been conducted in a large subsea region. PMID:26821379

  20. High-Resolution Underwater Mapping Using Side-Scan Sonar

    PubMed Central

    2016-01-01

    The goal of this study is to generate high-resolution sea floor maps using a Side-Scan Sonar(SSS). This is achieved by explicitly taking into account the SSS operation as follows. First, the raw sensor data is corrected by means of a physics-based SSS model. Second, the data is projected to the sea-floor. The errors involved in this projection are thoroughfully analysed. Third, a probabilistic SSS model is defined and used to estimate the probability of each sea-floor region to be observed. This probabilistic information is then used to weight the contribution of each SSS measurement to the map. Because of these models, arbitrary map resolutions can be achieved, even beyond the sensor resolution. Finally, a geometric map building method is presented and combined with the probabilistic approach. The resulting map is composed of two layers. The echo intensity layer holds the most likely echo intensities at each point in the sea-floor. The probabilistic layer contains information about how confident can the user or the higher control layers be about the echo intensity layer data. Experimental results have been conducted in a large subsea region. PMID:26821379

  1. LandScan 2010 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2010-07-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  2. LandScan 2011 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2012-11-19

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  3. LandScan 2009 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2009-07-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  4. LandScan 2008 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2009-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  5. LandScan 2003 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2004-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  6. LandScan 2004 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2005-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  7. LandScan 2006 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2006-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  8. LandScan 2002 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2003-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  9. LandScan 2007 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2008-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  10. LandScan 2005 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2006-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  11. LandScan 2000 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2001-12-31

    The LandScan data set is a worldwide population database compiled on a 30" X 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. The LandScan data set was developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient populations at risk.

  12. Optical-CT scanning of polymer gels

    PubMed Central

    Oldham, M

    2006-01-01

    The application of optical-CT scanning to achieve accurate high-resolution 3D dosimetry is a subject of current interest. The purpose of this paper is to provide a brief overview of past research and achievements in optical-CT polymer gel dosimetry, and to review current issues and challenges. The origins of optical-CT imaging of light-scattering polymer gels are reviewed. Techniques to characterize and optimize optical-CT performance are presented. Particular attention is given to studies of artifacts in optical-CT imaging, an important area that has not been well studied to date. The technique of optical-CT simulation by Monte-Carlo modeling is introduced as a tool to explore such artifacts. New simulation studies are presented and compared with experimental data. PMID:17082823

  13. Mutation Scanning and Genotyping in Plants by High Resolution DNA Melting

    Technology Transfer Automated Retrieval System (TEKTRAN)

    High-resolution melting analysis after PCR allows closed-tube mutation scanning and genotyping without processing, labeled probes, real-time monitoring or allele-specific amplification. PCR is performed in the presence of the saturating dye, LCGreen® Plus, with subsequent high-resolution melting ana...

  14. High-resolution vehicle headlamps: technologies and scanning prototype

    NASA Astrophysics Data System (ADS)

    Kloppenburg, Gerolf; Wolf, Alexander; Lachmayer, Roland

    2016-04-01

    The introduction of adaptive front lighting systems for vehicles has increased road safety and drivers' comfort significantly within the last years. A next step in this development is the realization of higher resolution systems to further increase the functionality of vehicle headlamps toward fully adaptive front lighting systems. In this paper, we present a short overview on highly dynamic front lighting systems and the essential technologies for their realization. Different approaches are compared and evaluated regarding their applications for headlamp systems. As an example for on-road projection systems, a laser-based scanning unit is set up and evaluated.

  15. Nonlinear histogram binning for quantitative analysis of lung tissue fibrosis in high-resolution CT data

    NASA Astrophysics Data System (ADS)

    Zavaletta, Vanessa A.; Bartholmai, Brian J.; Robb, Richard A.

    2007-03-01

    Diffuse lung diseases, such as idiopathic pulmonary fibrosis (IPF), can be characterized and quantified by analysis of volumetric high resolution CT scans of the lungs. These data sets typically have dimensions of 512 x 512 x 400. It is too subjective and labor intensive for a radiologist to analyze each slice and quantify regional abnormalities manually. Thus, computer aided techniques are necessary, particularly texture analysis techniques which classify various lung tissue types. Second and higher order statistics which relate the spatial variation of the intensity values are good discriminatory features for various textures. The intensity values in lung CT scans range between [-1024, 1024]. Calculation of second order statistics on this range is too computationally intensive so the data is typically binned between 16 or 32 gray levels. There are more effective ways of binning the gray level range to improve classification. An optimal and very efficient way to nonlinearly bin the histogram is to use a dynamic programming algorithm. The objective of this paper is to show that nonlinear binning using dynamic programming is computationally efficient and improves the discriminatory power of the second and higher order statistics for more accurate quantification of diffuse lung disease.

  16. High resolution, high bandwidth global shutter CMOS area scan sensors

    NASA Astrophysics Data System (ADS)

    Faramarzpour, Naser; Sonder, Matthias; Li, Binqiao

    2013-10-01

    Global shuttering, sometimes also known as electronic shuttering, enables the use of CMOS sensors in a vast range of applications. Teledyne DALSA Global shutter sensors are able to integrate light synchronously across millions of pixels with microsecond accuracy. Teledyne DALSA offers 5 transistor global shutter pixels in variety of resolutions, pitches and noise and full-well combinations. One of the recent generations of these pixels is implemented in 12 mega pixel area scan device at 6 um pitch and that images up to 70 frames per second with 58 dB dynamic range. These square pixels include microlens and optional color filters. These sensors also offer exposure control, anti-blooming and high dynamic range operation by introduction of a drain and a PPD reset gate to the pixel. The state of the art sense node design of Teledyne DALSA's 5T pixel offers exceptional shutter rejection ratio. The architecture is consistent with the requirements to use stitching to achieve very large area scan devices. Parallel or serial digital output is provided on these sensors using on-chip, column-wise analog to digital converters. Flexible ADC bit depth combined with windowing (adjustable region of interest, ROI) allows these sensors to run with variety of resolution/bandwidth combinations. The low power, state of the art LVDS I/O technology allows for overall power consumptions of less than 2W at full performance conditions.

  17. Detecting metastasis of gastric carcinoma using high-resolution micro-CT system: in vivo small animal study

    NASA Astrophysics Data System (ADS)

    Liu, Junting; Tian, Jie; Liang, Jimin; Li, Xiangsi; Yang, Xiang; Chen, Xiaofeng; Chen, Yi; Zhou, Yuanfang; Wang, Xiaorui

    2011-03-01

    Immunocytochemical and immunofluorescence staining are used for identifying the characteristics of metastasis in traditional ways. Micro-computed tomography (micro-CT) is a useful tool for monitoring and longitudinal imaging of tumor in small animal in vivo. In present study, we evaluated the feasibility of the detection for metastasis of gastric carcinoma by high-resolution micro-CT system with omnipaque accumulative enhancement method in the organs. Firstly, a high-resolution micro-CT ZKKS-MCT-sharp micro-CT was developed by our research group and Guangzhou Zhongke Kaisheng Medical Technology Co., Ltd. Secondly, several gastric carcinoma models were established through inoculating 2x106 BGC-823 gastric carcinoma cells subcutaneously. Thirdly, micro-CT scanning was performed after accumulative enhancement method of intraperitoneal injection of omnipaque contrast agent containing 360 mg iodine with a concentration of 350 mg I/ml. Finally, we obtained high-resolution anatomical information of the metastasis in vivo in a BALB/c NuNu nude mouse, the 3D tumor architecture is revealed in exquisite detail at about 35 μm spatial resolution. In addition, the accurate shape and volume of the micrometastasis as small as 0.78 mm3 can be calculated with our software. Overall, our data suggest that this imaging approach and system could be used to enhance the understanding of tumor proliferation, metastasis and could be the basis for evaluating anti-tumor therapies.

  18. High-resolution three-dimensional visualization of the rat spinal cord microvasculature by synchrotron radiation micro-CT

    SciTech Connect

    Hu, Jianzhong; Cao, Yong; Wu, Tianding; Li, Dongzhe; Lu, Hongbin

    2014-10-15

    Purpose: Understanding the three-dimensional (3D) morphology of the spinal cord microvasculature has been limited by the lack of an effective high-resolution imaging technique. In this study, synchrotron radiation microcomputed tomography (SRµCT), a novel imaging technique based on absorption imaging, was evaluated with regard to the detection of the 3D morphology of the rat spinal cord microvasculature. Methods: Ten Sprague-Dawley rats were used in this ex vivo study. After contrast agent perfusion, their spinal cords were isolated and scanned using conventional x-rays, conventional micro-CT (CµCT), and SRµCT. Results: Based on contrast agent perfusion, the microvasculature of the rat spinal cord was clearly visualized for the first time ex vivo in 3D by means of SRµCT scanning. Compared to conventional imaging techniques, SRµCT achieved higher resolution 3D vascular imaging, with the smallest vessel that could be distinguished approximately 7.4 μm in diameter. Additionally, a 3D pseudocolored image of the spinal cord microvasculature was generated in a single session of SRµCT imaging, which was conducive to detailed observation of the vessel morphology. Conclusions: The results of this study indicated that SRµCT scanning could provide higher resolution images of the vascular network of the spinal cord. This modality also has the potential to serve as a powerful imaging tool for the investigation of morphology changes in the 3D angioarchitecture of the neurovasculature in preclinical research.

  19. User Friendly Processing of Sediment CT Data: Software and Application in High Resolution Non-Destructive Sediment Core Data Sets

    NASA Astrophysics Data System (ADS)

    Reilly, B. T.; Stoner, J. S.; Wiest, J.; Abbott, M. B.; Francus, P.; Lapointe, F.

    2015-12-01

    Computed Tomography (CT) of sediment cores allow for high resolution images, three dimensional volumes, and down core profiles, generated through the attenuation of X-rays as a function of density and atomic number. When using a medical CT-Scanner, these quantitative data are stored in pixels using the Hounsfield scale, which are relative to the attenuation of X-rays in water and air at standard temperature and pressure. Here we present MATLAB based software specifically designed for sedimentary applications with a user friendly graphical interface to process DICOM files and stitch overlapping CT scans. For visualization, the software allows easy generation of core slice images with grayscale and false color relative to a user defined Hounsfield number range. For comparison to other high resolution non-destructive methods, down core Hounsfield number profiles are extracted using a method robust to coring imperfections, like deformation, bowing, gaps, and gas expansion. We demonstrate the usefulness of this technique with lacustrine sediment cores from the Western United States and Canadian High Arctic, including Fish Lake, Oregon, and Sawtooth Lake, Ellesmere Island. These sites represent two different depositional environments and provide examples for a variety of common coring defects and lithologies. The Hounsfield profiles and images can be used in combination with other high resolution data sets, including sediment magnetic parameters, XRF core scans and many other types of data, to provide unique insights into how lithology influences paleoenvironmental and paleomagnetic records and their interpretations.

  20. 3D segmentation of non-isolated pulmonary nodules in high resolution CT images

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangwei; McLennan, Geoffrey; Hoffman, Eric A.; Sonka, Milan

    2005-04-01

    The purpose of this study is to develop a computer-aided diagnosis (CAD) system to segment small size non-isolated pulmonary nodules in high resolution helical CT scans. A new automated method of segmenting juxtapleural nodules was proposed, in which a quadric surface fitting procedure was used to create a boundary between a juxtapleural nodule and its neighboring pleural surface. Experiments on some real CT nodule data showed that this method was able to yield results that reflect the local shape of the pleural surface. Additionally, a scheme based on parametrically deformable geometric model was developed to deal with the problem of segmenting nodules attached to vessels. A vessel segment connected to a nodule was modeled using superquadrics with parametric deformations. The boundary between a vascularized nodule and the attached vessels can be recovered by finding the deformed superquadrics which approximates the vessels. Gradient descent scheme was utilized to optimize the parameters of the superquadrics. Simple experiments on synthetic data showed this scheme is promising.

  1. Computer Aided Evaluation of Ankylosing Spondylitis Using High-Resolution CT

    PubMed Central

    Yao, Jianhua; Ward, Michael M.; Yao, Lawrence; Summers, Ronald M.

    2009-01-01

    Ankylosing Spondylitis is a disease characterized by abnormal bone structures (syndesmophytes) growing at intervertebral disk spaces. Because this growth is so slow as to be undetectable on plain radiographs taken over years, it is desirable to resort to computerized techniques to complement qualitative human judgment with precise quantitative measures. We developed an algorithm with minimal user intervention that provides such measures using high-resolution computed tomography (CT) images. To the best of our knowledge it is the first time that determination of the disease’s status is attempted by direct measurement of the syndesmophytes. The first part of our algorithm segments the whole vertebral body using a 3-D multiscale cascade of successive level sets. The second part extracts the continuous ridgeline of the vertebral body where syndesmophytes are located. For that we designed a novel level set implementation capable of evolving on the isosurface of an object represented by a triangular mesh using curvature features. The third part of the algorithm segments the syndesmophytes from the vertebral body using local cutting planes and quantitates them. We present experimental work done with 10 patients from each of which we processed five vertebrae. The results of our algorithm were validated by comparison with a semi-quantitative evaluation made by a medical expert who visually inspected the CT scans. Correlation between the two evaluations was found to be 0.936 (p < 10−18). PMID:18779065

  2. Reduction of ring artefacts in high resolution micro-CT reconstructions.

    PubMed

    Sijbers, Jan; Postnov, Andrei

    2004-07-21

    High resolution micro-CT images are often corrupted by ring artefacts, prohibiting quantitative analysis and hampering post processing. Removing or at least significantly reducing such artefacts is indispensable. However, since micro-CT systems are pushed to the extremes in the quest for the ultimate spatial resolution, ring artefacts can hardly be avoided. Moreover, as opposed to clinical CT systems, conventional correction schemes such as flat-field correction do not lead to satisfactory results. Therefore, in this note a simple but efficient and fast post processing method is proposed that effectively reduces ring artefacts in reconstructed micro-CT images. PMID:15357205

  3. NOTE: Reduction of ring artefacts in high resolution micro-CT reconstructions

    NASA Astrophysics Data System (ADS)

    Sijbers, Jan; Postnov, Andrei

    2004-07-01

    High resolution micro-CT images are often corrupted by ring artefacts, prohibiting quantitative analysis and hampering post processing. Removing or at least significantly reducing such artefacts is indispensable. However, since micro-CT systems are pushed to the extremes in the quest for the ultimate spatial resolution, ring artefacts can hardly be avoided. Moreover, as opposed to clinical CT systems, conventional correction schemes such as flat-field correction do not lead to satisfactory results. Therefore, in this note a simple but efficient and fast post processing method is proposed that effectively reduces ring artefacts in reconstructed mgr-CT images.

  4. High-resolution 3D micro-CT imaging of breast microcalcifications: a preliminary analysis

    PubMed Central

    2014-01-01

    Background Detection of microcalcifications on mammograms indicates the presence of breast lesion, and the shapes of the microcalcifications as seen by conventional mammography correlates with the probability of malignancy. This preliminary study evaluated the 3D shape of breast microcalcifications using micro-computed tomography (micro-CT) and compared the findings with those obtained using anatomopathological analysis. Methods The study analyzed breast biopsy samples from 11 women with findings of suspicious microcalcifications on routine mammograms. The samples were imaged using a micro-CT (SkyScan 1076) at a resolution of 35 μm. Images were reconstructed using filtered back-projection and analyzed in 3D using surface rendering. The samples were subsequently analyzed by the pathology service. Reconstructed 3D images were compared with the corresponding histological slices. Results Anatomopathological analysis showed that 5 of 11 patients had ductal breast carcinoma in situ. One patient was diagnosed with invasive ductal carcinoma. Individual object analysis was performed on 597 microcalcifications. Malignant microcalcifications tended to be thinner and to have a smaller volume and surface area, while their surface area-to-volume ratio was greater than that of benign microcalcifications. The structure model index values were the same for malignant and benign microcalcifications. Conclusions This is the first study to use micro-CT for quantitative 3D analysis of microcalcifications. This high-resolution imaging technique will be valuable for gaining a greater understanding of the morphologic characteristics of malignant and benign microcalcifications. The presence of many small microcalcifications can be an indication of malignancy. For the larger microcalcifications, 3D parameters confirmed the more irregular shape of malignant microcalcifications. PMID:24393444

  5. Imaging of pore networks and related interfaces in soil systems by using high resolution X-ray micro-CT

    NASA Astrophysics Data System (ADS)

    Zacher, Gerhard; Eickhorst, Thilo; Schmidt, Hannes; Halisch, Matthias

    2016-04-01

    Today's high-resolution X-ray CT with its powerful tubes and great detail detectability lends itself naturally to geological and pedological applications. Those include the non-destructive interior examination and textural analysis of rock and soil samples and their permeability and porosity - to name only a few. Especially spatial distribution and geometry of pores, mineral phases and fractures are important for the evaluation of hydrologic and aeration properties in soils as well as for root development in the soil matrix. The possibility to visualize a whole soil aggregate or root tissue in a non-destructive way is undoubtedly the most valuable feature of this type of analysis and is a new area for routine application of high resolution X-ray micro-CT. The paper outlines recent developments in hard- and software requirements for high resolution CT. It highlights several pedological applications which were performed with the phoenix nanotom m, the first 180 kV nanofocus CT system tailored specifically for extremely high-resolution scans of variable sized samples with voxel-resolutions down to < 300 nm. In addition very good contrast resolution can be obtained as well which is necessary to distinguish biogenic material in soil aggregates amongst others. We will address visualization and quantification of porous networks in 3D in different environmental samples ranging from clastic sedimentary rock to soil cores and individual soil aggregates. As several processes and habitat functions are related to various pore sizes imaging of the intact soil matrix will be presented on different scales of interest - from the mm-scale representing the connectivity of macro-pores down to the micro-scale representing the space of microbial habitats. Therefore, soils were impregnated with resin and scanned via X-ray CT. Scans at higher resolution were obtained from sub-volumes cut from the entire resin impregnated block and from crop roots surrounded by rhizosphere soil. Within the

  6. Knee CT scan

    MedlinePlus

    CAT scan - knee; Computed axial tomography scan - knee; Computed tomography scan - knee ... Saunders; 2015:chap 93. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  7. Near-real-time mosaics from high-resolution side-scan sonar

    USGS Publications Warehouse

    Danforth, William W.; O'Brien, Thomas F.; Schwab, W.C.

    1991-01-01

    High-resolution side-scan sonar has proven to be a very effective tool for stuyding and understanding the surficial geology of the seafloor. Since the mid-1970s, the US Geological Survey has used high-resolution side-scan sonar systems for mapping various areas of the continental shelf. However, two problems typically encountered included the short range and the high sampling rate of high-resolution side-scan sonar systems and the acquisition and real-time processing of the enormous volume of sonar data generated by high-resolution suystems. These problems were addressed and overcome in August 1989 when the USGS conducted a side-scan sonar and bottom sampling survey of a 1000-sq-km section of the continental shelf in the Gulf of Farallones located offshore of San Francisco. The primary goal of this survey was to map an area of critical interest for studying continental shelf sediment dynamics. This survey provided an opportunity to test an image processing scheme that enabled production of a side-scan sonar hard-copy mosaic during the cruise in near real-time.

  8. A complete CAD system for pulmonary nodule detection in high resolution CT images

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangwei; McLennan, Geoffrey; Hoffman, Eric A.; Sonka, Milan

    2005-04-01

    The purpose of this study is to develop a computer-aided diagnosis (CAD) system to detect small-sized (from 2mm to 10mm) pulmonary nodules in high resolution helical CT scans. A new CAD system is proposed to locate both juxtapleural nodules and non-pleural nodules. Isotropic resampling and lung segmentation are performed as preprocessing steps. Morphological closing was utilized to smooth the lung contours to include the indented possible juxtapleural locations, thresholding and 3D component analysis were used to obtain 3D volumetric nodule candidates; furthermore, gray level and geometric features were extracted, and analyzed using linear discriminant analysis (LDA) classifier. Leave one case out method was used to evaluate the LDA. To deal with non-pleural nodules, a discrete-time cellular neural network (DTCNN) based on local shape features was developed. This scheme employed the local shape property to perform voxel classification. The shape index feature successfully captured the local shape difference between nodules and non-nodules, especially vessels. To tailor it for lung nodule detection, this DTCNN was trained using genetic algorithms (GAs) to derive the shape index variation pattern of nodules. Nonoverlapping training and testing sets were utilized in the non-pleural nodule detection. 19 clinical thoracic CT cases involving a total of 4838 sectional images were used in this work. The juxtapleural nodule detection method was able to obtain sensitivity 81.25% with an average of 8.29 FPs per case. The non-pleural nodule finding scheme attained sensitivity of 83.9% with an average 3.47 FPs/case. Combining the two subsystems together, an overall performance of 82.98% sensitivity with 11.76 FPs/case can be obtained.

  9. Thoracic spine CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. Once you are inside the scanner, the machine's x-ray beam rotates around you. (Modern "spiral" scanners can perform the exam without stopping.) A computer ...

  10. Head CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. While inside the scanner, the machine's x-ray beam rotates around you. ... breathing during the test, you should notify the scanner operator immediately. Scanners come with an intercom and ...

  11. LandScan 2012 High Resolution Global Population DataSet

    Energy Science and Technology Software Center (ESTSC)

    2013-09-17

    The LandScan data set is a worldwide population database compiled on a 30"x20" latitude/longitude grid. Census counts at sub-national level were apportioned to each grid cell based on likelihood coefficients, which are based on land cover, slope, road proximity, high-resolution imagery, and other data sets.

  12. LandScan 2014 High-Resolution Global Population Data Set

    SciTech Connect

    2015-01-01

    The LandScan data set is a worldwide population database compiled on a 30" X 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on land cover, slope, road proximity, high-resolution imagery, and other data sets. The LandScan data set was developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient populations at risk.

  13. Pelvic CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. Once you are inside the scanner, the machine's x-ray beam rotates around you. ... weight limit. Too much weight can damage the scanner's working parts. You will be asked to remove ...

  14. High resolution multidetector CT aided tissue analysis and quantification of lung fibrosis

    NASA Astrophysics Data System (ADS)

    Zavaletta, Vanessa A.; Karwoski, Ronald A.; Bartholmai, Brian; Robb, Richard A.

    2006-03-01

    Idiopathic pulmonary fibrosis (IPF, also known as Idiopathic Usual Interstitial Pneumontis, pathologically) is a progressive diffuse lung disease which has a median survival rate of less than four years with a prevalence of 15-20/100,000 in the United States. Global function changes are measured by pulmonary function tests and the diagnosis and extent of pulmonary structural changes are typically assessed by acquiring two-dimensional high resolution CT (HRCT) images. The acquisition and analysis of volumetric high resolution Multi-Detector CT (MDCT) images with nearly isotropic pixels offers the potential to measure both lung function and structure. This paper presents a new approach to three dimensional lung image analysis and classification of normal and abnormal structures in lungs with IPF.

  15. Precise 3D dimensional metrology using high-resolution x-ray computed tomography (μCT)

    NASA Astrophysics Data System (ADS)

    Brunke, Oliver; Santillan, Javier; Suppes, Alexander

    2010-09-01

    measurement and the CT method of measurement within the same CT data set. A comparison of these results to the data obtained by means of CT shows that state of the art high resolution CT can provide measurement accuracy on the order of established coordinate measurement techniques.

  16. Image-Based Motion Compensation for High-Resolution Extremities Cone-Beam CT

    PubMed Central

    Sisniega, A.; Stayman, J. W.; Cao, Q.; Yorkston, J.; Siewerdsen, J. H.; Zbijewski, W.

    2016-01-01

    Purpose Cone-beam CT (CBCT) of the extremities provides high spatial resolution, but its quantitative accuracy may be challenged by involuntary sub-mm patient motion that cannot be eliminated with simple means of external immobilization. We investigate a two-step iterative motion compensation based on a multi-component metric of image sharpness. Methods Motion is considered with respect to locally rigid motion within a particular region of interest, and the method supports application to multiple locally rigid regions. Motion is estimated by maximizing a cost function with three components: a gradient metric encouraging image sharpness, an entropy term that favors high contrast and penalizes streaks, and a penalty term encouraging smooth motion. Motion compensation involved initial coarse estimation of gross motion followed by estimation of fine-scale displacements using high resolution reconstructions. The method was evaluated in simulations with synthetic motion (1–4 mm) applied to a wrist volume obtained on a CMOS-based CBCT testbench. Structural similarity index (SSIM) quantified the agreement between motion-compensated and static data. The algorithm was also tested on a motion contaminated patient scan from dedicated extremities CBCT. Results Excellent correction was achieved for the investigated range of displacements, indicated by good visual agreement with the static data. 10–15% improvement in SSIM was attained for 2–4 mm motions. The compensation was robust against increasing motion (4% decrease in SSIM across the investigated range, compared to 14% with no compensation). Consistent performance was achieved across a range of noise levels. Significant mitigation of artifacts was shown in patient data. Conclusion The results indicate feasibility of image-based motion correction in extremities CBCT without the need for a priori motion models, external trackers, or fiducials. PMID:27346909

  17. Image-based motion compensation for high-resolution extremities cone-beam CT

    NASA Astrophysics Data System (ADS)

    Sisniega, A.; Stayman, J. W.; Cao, Q.; Yorkston, J.; Siewerdsen, J. H.; Zbijewski, W.

    2016-03-01

    Purpose: Cone-beam CT (CBCT) of the extremities provides high spatial resolution, but its quantitative accuracy may be challenged by involuntary sub-mm patient motion that cannot be eliminated with simple means of external immobilization. We investigate a two-step iterative motion compensation based on a multi-component metric of image sharpness. Methods: Motion is considered with respect to locally rigid motion within a particular region of interest, and the method supports application to multiple locally rigid regions. Motion is estimated by maximizing a cost function with three components: a gradient metric encouraging image sharpness, an entropy term that favors high contrast and penalizes streaks, and a penalty term encouraging smooth motion. Motion compensation involved initial coarse estimation of gross motion followed by estimation of fine-scale displacements using high resolution reconstructions. The method was evaluated in simulations with synthetic motion (1-4 mm) applied to a wrist volume obtained on a CMOS-based CBCT testbench. Structural similarity index (SSIM) quantified the agreement between motion-compensated and static data. The algorithm was also tested on a motion contaminated patient scan from dedicated extremities CBCT. Results: Excellent correction was achieved for the investigated range of displacements, indicated by good visual agreement with the static data. 10-15% improvement in SSIM was attained for 2-4 mm motions. The compensation was robust against increasing motion (4% decrease in SSIM across the investigated range, compared to 14% with no compensation). Consistent performance was achieved across a range of noise levels. Significant mitigation of artifacts was shown in patient data. Conclusion: The results indicate feasibility of image-based motion correction in extremities CBCT without the need for a priori motion models, external trackers, or fiducials.

  18. Nano-CT Scanning

    NASA Astrophysics Data System (ADS)

    Masschaele, B.

    Tomography is a non-destructive research technique which allows investigating the internal structure of objects in 3D . The "centre for X-ray tomography (UGCT)" of the Ghent University has developed a modular X-ray micro/nanoCT scanner which is used for multi-disciplinary research. In this paper we give an overview of the different components of the UGCT scanner with special attention to the X-ray imaging detectors. Also the software tools for data reconstruction and analysis and some obtained results are discussed.

  19. Children, CT Scan and Radiation

    PubMed Central

    Bajoghli, Morteza; Bajoghli, Farshad; Tayari, Nazila; Rouzbahani, Reza

    2010-01-01

    Children are more sensitive to radiation than adults. Computerized tomography (CT) consists of 25 % of all medical imaging. It was estimated that more than 2% of all carcinomas in the USA are due to CT scans. There is an ongoing focus on the reduction of CT scan radiation dose. Awareness about risk-benefits of CT has increased. Reduction of radiological exam is an important issue because the accumulation effects of radiation can be hazardous. In addition, proper protocol should be followed for diagnostic procedures of ionization radiation and computerized tomography. Effective radiation dose should range from 0.8 to 10.5 millisievert. The same protocol should be followed in different hospitals as well. Basic principles of radiation protection should be monitored. As much as possible, both technician and radiologist must be present during computerized tomography for children, and MRI and ultrasound should be replaced if possible. PMID:21566776

  20. Fabrication of [001]-oriented tungsten tips for high resolution scanning tunneling microscopy

    PubMed Central

    Chaika, A. N.; Orlova, N. N.; Semenov, V. N.; Postnova, E. Yu.; Krasnikov, S. A.; Lazarev, M. G.; Chekmazov, S. V.; Aristov, V. Yu.; Glebovsky, V. G.; Bozhko, S. I.; Shvets, I. V.

    2014-01-01

    The structure of the [001]-oriented single crystalline tungsten probes sharpened in ultra-high vacuum using electron beam heating and ion sputtering has been studied using scanning and transmission electron microscopy. The electron microscopy data prove reproducible fabrication of the single-apex tips with nanoscale pyramids grained by the {011} planes at the apexes. These sharp, [001]-oriented tungsten tips have been successfully utilized in high resolution scanning tunneling microscopy imaging of HOPG(0001), SiC(001) and graphene/SiC(001) surfaces. The electron microscopy characterization performed before and after the high resolution STM experiments provides direct correlation between the tip structure and picoscale spatial resolution achieved in the experiments. PMID:24434734

  1. Varied-space grazing incidence gratings in high resolution scanning spectrometers

    SciTech Connect

    Hettrick, M.C.; Underwood, J.H.

    1986-10-01

    We discuss the dominant geometrical aberrations of a grazing incidence reflection grating and new techniques which can be used to reduce or eliminate them. Convergent beam geometries and the aberration correction possible with varied groove spacings are each found to improve the spectral resolution and speed of grazing incidence gratings. In combination, these two techniques can result in a high resolution (lambda/..delta..lambda > 10/sup 4/) monochromator or scanning spectrometer with a simple rotational motion for scanning wavelength or selecting the spectral band. 21 refs., 4 figs.

  2. Application of high resolution synchrotron micro-CT radiation in dental implant osseointegration.

    PubMed

    Neldam, Camilla Albeck; Lauridsen, Torsten; Rack, Alexander; Lefolii, Tore Tranberg; Jørgensen, Niklas Rye; Feidenhans'l, Robert; Pinholt, Else Marie

    2015-06-01

    The purpose of this study was to describe a refined method using high-resolution synchrotron radiation microtomography (SRmicro-CT) to evaluate osseointegration and peri-implant bone volume fraction after titanium dental implant insertion. SRmicro-CT is considered gold standard evaluating bone microarchitecture. Its high resolution, high contrast, and excellent high signal-to-noise-ratio all contribute to the highest spatial resolutions achievable today. Using SRmicro-CT at a voxel size of 5 μm in an experimental goat mandible model, the peri-implant bone volume fraction was found to quickly increase to 50% as the radial distance from the implant surface increased, and levelled out to approximately 80% at a distance of 400 μm. This method has been successful in depicting the bone and cavities in three dimensions thereby enabling us to give a more precise answer to the fraction of the bone-to-implant contact compared to previous methods. PMID:25957106

  3. Force scanning: A rapid, high-resolution approach for spatial mechanical property mapping

    PubMed Central

    Darling, E M

    2011-01-01

    Atomic force microscopy (AFM) can be used to co-localize mechanical properties and topographical features through property mapping techniques. The most common approach for testing biological materials at the micro-and nano-scales is force mapping, which involves taking individual force curves at discrete sites across a region of interest. Limitations of force mapping include long testing times and low resolution. While newer AFM methodologies, like modulated scanning and torsional oscillation, circumvent this problem, their adoption for biological materials has been limited. This could be due to their need for specialized software algorithms and/or hardware. The objective of this study is to develop a novel force scanning technique using AFM to rapidly capture high-resolution topographical images of soft biological materials while simultaneously quantifying their mechanical properties. Force scanning is a straight-forward methodology applicable to a wide range of materials and testing environments, requiring no special modification to standard AFMs. Essentially, if a contact mode image can be acquired, then force scanning can be used to produce a spatial modulus map. The current study first validates this technique using agarose gels, comparing results to the standard force mapping approach. Biologically relevant demonstrations are then presented for high-resolution modulus mapping of individual cells, cell-cell interfaces, and articular cartilage tissue. PMID:21411911

  4. An improved method for the removal of ring artifacts in high resolution CT imaging

    NASA Astrophysics Data System (ADS)

    Rashid, Sabrina; Lee, Soo Yeol; Hasan, Md Kamrul

    2012-12-01

    In high resolution computed tomography (CT) using flat panel detectors, imperfect or defected detector elements cause stripe artifacts in sinogram which results in concentric ring artifacts in the image. Such ring artifacts obscure image details in the regions of interest of the image. In this article, novel techniques are proposed for the detection, classification, and correction of ring artifacts in the sinogram domain. The proposed method is suitable for multislice CT with parallel or fan beam geometry. It can also be employed for ring artifact removal in 3D cone beam volume CT by adopting a sinogram by sinogram processing technique. The detection algorithm is based on applying data driven thresholds on the mean curve and difference curve of the sinogram. The ring artifacts are classified into three types and a separate correction algorithm is used for each class. The performance of the proposed techniques is evaluated on a number of real micro-CT images. Experimental results corroborate that the proposed algorithm can remove ring artifacts from micro-CT images more effectively as compared to other recently reported techniques in the literature.

  5. A high-resolution imaging technique using a whole-body, research photon counting detector CT system

    NASA Astrophysics Data System (ADS)

    Leng, S.; Yu, Z.; Halaweish, A.; Kappler, S.; Hahn, K.; Henning, A.; Li, Z.; Lane, J.; Levin, D. L.; Jorgensen, S.; Ritman, E.; McCollough, C.

    2016-03-01

    A high-resolution (HR) data collection mode has been introduced to a whole-body, research photon-counting-detector CT system installed in our laboratory. In this mode, 64 rows of 0.45 mm x 0.45 mm detector pixels were used, which corresponded to a pixel size of 0.25 mm x 0.25 mm at the iso-center. Spatial resolution of this HR mode was quantified by measuring the MTF from a scan of a 50 micron wire phantom. An anthropomorphic lung phantom, cadaveric swine lung, temporal bone and heart specimens were scanned using the HR mode, and image quality was subjectively assessed by two experienced radiologists. High spatial resolution of the HR mode was evidenced by the MTF measurement, with 15 lp/cm and 20 lp/cm at 10% and 2% modulation. Images from anthropomorphic phantom and cadaveric specimens showed clear delineation of small structures, such as lung vessels, lung nodules, temporal bone structures, and coronary arteries. Temporal bone images showed critical anatomy (i.e. stapes superstructure) that was clearly visible in the PCD system. These results demonstrated the potential application of this imaging mode in lung, temporal bone, and vascular imaging. Other clinical applications that require high spatial resolution, such as musculoskeletal imaging, may also benefit from this high resolution mode.

  6. A High-Resolution Imaging Technique using a Whole-body, Research Photon Counting Detector CT System

    PubMed Central

    Leng, S.; Yu, Z.; Halaweish, A.; Kappler, S.; Hahn, K.; Henning, A.; Li, Z.; Lane, J.; Levin, D. L.; Jorgensen, S.; Ritman, E.; McCollough, C.

    2016-01-01

    A high-resolution (HR) data collection mode has been introduced to the whole-body, research photon-counting-detector CT system installed in our laboratory. In this mode, 64 rows of 0.45 mm × 0.45 mm detectors pixels were used, which corresponded to a pixel size of 0.225 mm × 0.225 mm at the iso-center. Spatial resolution of this HR mode was quantified by measuring the MTF from a scan of a 50 micron wire phantom. An anthropomorphic lung phantom, cadaveric swine lung, temporal bone and heart specimens were scanned using the HR mode, and image quality was subjectively assessed by two experienced radiologists. Comparison of the HR mode images against their energy integrating system (EID) equivalents using comb filters was also performed. High spatial resolution of the HR mode was evidenced by the MTF measurement, with 15 lp/cm and 20 lp/cm at 10% and 2% MTF. Images from anthropomorphic phantom and cadaveric specimens showed clear delineation of small structures, such as lung vessels, lung nodules, temporal bone structures, and coronary arteries. Temporal bone images showed critical anatomy (i.e. stapes superstructure) that was clearly visible in the PCD system but hardly visible with the EID system. These results demonstrated the potential application of this imaging mode in lung, temporal bone, and vascular imaging. Other clinical applications that require high spatial resolution, such as musculoskeletal imaging, may also benefit from this high resolution mode. PMID:27330238

  7. High-resolution 3D OCT imaging with a MEMS scanning endoscope

    NASA Astrophysics Data System (ADS)

    Fan, Li S.; Piyawattanametha, Wibool; Wu, Ming C.; Aguirre, Aaron D.; Herz, Paul R.; Chen, Yu; Fujimoto, James G.

    2005-01-01

    Three-dimensional imaging is achieved by optical coherence tomography (OCT) integrated with a two-axis MEMS scanner to enable noninvasive volume imaging of biological tissues. The longitudinal scan is obtained by optical coherence interferometry. The transverse scan is obtained by tilting the two-axis MEMS mirror to scan the optical beam across the target. High-resolution OCT imaging has enabled in vivo observation of tissue architectural layers and differentiation of normal from tumor lesions within the human gastrointestinal tract. MEMS scanner based catheters with distal beam scanning can image with higher speed, precision, and repeatability than conventional linear scanning catheters. In this work, a 1-mm diameter MEMS scanning mirror with collimator and focusing optics is integrated into a compact 5-mm diameter package that is compatible with limited space in the endoscope. A large fill factor mirror provides high aperture over large scan angle and frequencies of hundreds of Hz in both axes. Using a broadband femtosecond laser light source, high axial image resolution of ~5 um is achieved at 1.06 um wavelength. Transverse resolution of ~ 12-um is demonstrated for cross-sectional image with the endoscope.

  8. Virtual histology by means of high-resolution X-ray CT.

    PubMed

    Cnudde, V; Masschaele, B; De Cock, H E V; Olstad, K; Vlaminck, L; Vlassenbroeck, J; Dierick, M; Witte, Y D; Van Hoorebeke, L; Jacobs, P

    2008-12-01

    Micro-CT is a non-destructive technique for 3D tomographic investigation of an object. A 3D representation of the internal structure is calculated based on a series of X-ray radiographs taken from different angles. The spatial resolution of current laboratory-used micro-CT systems has come down over the last years from a few tens of microns to a few microns. This opens the possibility to perform histological investigations in 3D on a virtual representation of a sample, referred to as virtual 3D histology. The advantage of micro-CT based virtual histology is the immediate and automated 3D visualization of the sample without prior slicing, sample preparation like decalcification, photographing and aligning. This not only permits a drastic reduction in preparation time but also offers the possibility to easily investigate objects that are difficult to slice. This article presents results that were obtained on punch biopsies of horse skin, (dental) alveolus of ponies and chondro-osseous samples from the tarsus of foals studied with the new high resolution micro-CT set-up (HRXCT) at the Ghent University (Belgium) (http://www.ugct.ugent.be). This state-of-the-art set-up provides a 1 micron resolution and is therefore ideally suited for a direct comparison with standard light microscopy-based histology. PMID:19094024

  9. High-resolution imaging of kidney vascular corrosion casts with Nano-CT.

    PubMed

    Wagner, Roger; Van Loo, Denis; Hossler, Fred; Czymmek, Kirk; Pauwels, Elin; Van Hoorebeke, Luc

    2011-04-01

    A vascular corrosion cast of an entire mouse kidney was scanned with a modular multiresolution X-ray nanotomography system. Using an isotropic voxel pitch of 0.5 μm, capillary systems such as the vasa recta, peritubular capillaries and glomeruli were clearly resolved. This represents a considerable improvement over corrosion casts scanned with microcomputed tomography systems. The resolving power of this system was clearly demonstrated by the unique observation of a dense, subcapsular mat of capillaries enveloping the entire outer surface of the cortical region. Resolution of glomerular capillaries was comparable to similar models derived from laser scanning confocal microscopy. The high-resolution, large field of view and the three-dimensional nature of the resulting data opens new possibilities for the use of corrosion casting in research. PMID:21122193

  10. Automatic tissue classification for high-resolution breast CT images based on bilateral filtering

    NASA Astrophysics Data System (ADS)

    Yang, Xiaofeng; Sechopoulos, Ioannis; Fei, Baowei

    2011-03-01

    Breast tissue classification can provide quantitative measurements of breast composition, density and tissue distribution for diagnosis and identification of high-risk patients. In this study, we present an automatic classification method to classify high-resolution dedicated breast CT images. The breast is classified into skin, fat and glandular tissue. First, we use a multiscale bilateral filter to reduce noise and at the same time keep edges on the images. As skin and glandular tissue have similar CT values in breast CT images, we use morphologic operations to get the mask of the skin based on information of its position. Second, we use a modified fuzzy C-mean classification method twice, one for the skin and the other for the fatty and glandular tissue. We compared our classified results with manually segmentation results and used Dice overlap ratios to evaluate our classification method. We also tested our method using added noise in the images. The overlap ratios for glandular tissue were above 94.7% for data from five patients. Evaluation results showed that our method is robust and accurate.

  11. High-resolution CT analysis of facial struts in trauma: 1. Normal anatomy

    SciTech Connect

    Gentry, L.R.; Manor, W.F.; Turski, P.A.; Strother, C.M.

    1983-03-01

    The recent availability of high-spatial-resolution thin-section computed tomography (CT), capable of accurately depicting the thin body septa of the facial skeleton, has expanded the role that diagnostic radiology can play in the evaluation of the patient with facial trauma. A detailed knowledge of the normal CT anatomy of the face, however, is essential to optimally utilize this modality. The normal anatomy of the face was investigated in six cadavers using thin-section (1.5 mm) high-resolution CT. A systematic method of analysis that can facilitate evaluation of the face is presented. The face is conceptualized as three groups of interconnected osseous struts or buttresses that are oriented in the horizontal, sagittal, and coronal planes. Each group of struts is closely related to specific soft-tissue structures that are susceptible to injury. Sequential evaluation of each strut and its associated soft tissue assures a comprehensive evaluation of the face. While both axial and coronal sections are of value in some circumstances, the coronal ones are most helpful in accurately depicting the structures of the face that are most likely to be injured in trauma.

  12. High-resolution and high-speed CT in industry and research

    NASA Astrophysics Data System (ADS)

    Zabler, S.; Fella, C.; Dietrich, A.; Nachtrab, F.; Salamon, Michael; Voland, V.; Ebensperger, T.; Oeckl, S.; Hanke, R.; Uhlmann, N.

    2012-10-01

    The application of industrial CT covers many orders of magnitude of object sizes, ranging from freight containers (few meters) down to liquid foams (i.e. for food industry) or even parts of insects which are only several hundreds of micrometers in size. Similarly, the specifications for acquisition speed extend over some orders of magnitude, from hours to sub-second CT. We present the current technology in terms of X-ray sources and detectors, along with numerous applications from industry and materials research: e.g. industrial high-speed CT of car pistons, in situ micro-CT of milk foam decay at micrometer spatial resolution and 8 s scan time, as well as ex situ scans of tensile tested Nickel-alloys. The Fraunhofer Development Center X-ray Technology (Fürth, Germany) and the Chair of X-ray Microscopy (University Würzburg, Germany) are currently working on extending the technological limits, demonstrated, e,g. by the development of advanced X-ray detectors or a new inhouse CT system which comprises a high-brilliance liquid metal jet anode.

  13. High-resolution atmospheric water vapor measurements with a scanning differential absorption lidar

    NASA Astrophysics Data System (ADS)

    Späth, F.; Behrendt, A.; Muppa, S. K.; Metzendorf, S.; Riede, A.; Wulfmeyer, V.

    2014-11-01

    The scanning differential absorption lidar (DIAL) of the University of Hohenheim (UHOH) is presented. The UHOH DIAL is equipped with an injection-seeded frequency-stabilized high-power Ti:sapphire laser operated at 818 nm with a repetition rate of 250 Hz. A scanning transceiver unit with a 80 cm primary mirror receives the atmospheric backscatter signals. The system is capable of water vapor measurements with temporal resolutions of a few seconds and a range resolution between 30 and 300 m at daytime. It allows to investigate surface-vegetation-atmosphere exchange processes with high resolution. In this paper, we present the design of the instrument and illustrate its performance with recent water vapor measurements taken in Stuttgart-Hohenheim and in the frame of the HD(CP)2 Observational Prototype Experiment (HOPE). HOPE was located near research center Jülich, in western Germany, in spring 2013 as part of the project "High Definition of Clouds and Precipitation for advancing Climate Prediction" (HD(CP)2). Scanning measurements reveal the 3-dimensional structures of the water vapor field. The influence of uncertainties within the calculation of the absorption cross-section at wavelengths around 818 nm for the WV retrieval is discussed. Radiosonde intercomparisons show a very small bias between the instruments of only (-0.04 ± 0.11) g m-3 or (-1.0 ± 2.3) % in the height range of 0.5 to 3 km.

  14. Synchronous scanning of reference mirror and objective lens for high-resolution full-field interferometry

    NASA Astrophysics Data System (ADS)

    Kashiwagi, Ken; Kasuya, Yosuke; Kojima, Shuto; Kurokawa, Takashi

    2015-03-01

    We realized a long-scanning-range and high-resolution interferometry in a time-domain full-field microscopic scheme by adopting a simple configuration. A reference mirror was synchronously scanned with an objective lens, which was installed in a common path, to prevent lateral resolution degradation due to defocus at the mirror. High axial resolution was obtained using a broadband supercontinuum (SC) generated by a 1.55 µm pump. The SC was generated by propagating a femtosecond pulse at 1.55 µm through a highly nonlinear dispersion shifted fiber with a small dispersion slope. We designed and constructed an interferometer carefully to utilize the entire bandwidth. The broad bandwidth of the interferometer achieved an axial resolution of 2.50 µm in air. The synchronous scanning maintained a lateral resolution longer than 1 mm. The system successfully yielded a cross-sectional image of two layers of scotch tape along the 400-µm-depth and 90-nm-step surface profiles.

  15. High-Resolution CT Imaging of Single Breast Cancer Microcalcifications In Vivo

    PubMed Central

    Inoue, Kazumasa; Liu, Fangbing; Hoppin, Jack; Lunsford, Elaine P.; Lackas, Christian; Hesterman, Jacob; Lenkinski, Robert E.; Fujii, Hirofumi; Frangioni, John V.

    2010-01-01

    Microcalcification is a hallmark of breast cancer and a key diagnostic feature for mammography. We recently described the first robust animal model of breast cancer microcalcification. In this study, we hypothesized that high-resolution computed tomography (CT) could potentially detect the genesis of a single microcalcification in vivo and quantify its growth over time. Using a commercial CT scanner, we systematically optimized acquisition and reconstruction parameters. Two ray-tracing image reconstruction algorithms were tested, a voxel-driven “fast” cone beam algorithm (FCBA) and a detector-driven “exact” cone beam algorithm (ECBA). By optimizing acquisition and reconstruction parameters, we were able to achieve a resolution of 104 µm full-width at half maximum (FWHM). At an optimal detector sampling frequency, ECBA provided a 28 µm (21%) FWHM improvement in resolution over FCBA. In vitro, we were able to image a single 300 µm by 100 µm hydroxyapatite crystal. In a syngeneic rat model of breast cancer, we were able to detect the genesis of a single microcalcification in vivo and follow its growth longitudinally over weeks. Taken together, this study provides an in vivo “gold standard” for the development of calcification-specific contrast agents and a model system for studying the mechanism of breast cancer microcalcification. PMID:21504703

  16. High-resolution raster scan optoacoustic mesoscopy of genetically modified drosophila pupae

    NASA Astrophysics Data System (ADS)

    Omar, Murad; Gateau, Jérôme; Ntziachristos, Vasilis

    2014-03-01

    Optoacoutic mesoscopy aims to bridge the gap between optoacoustic microscopy and optoacoustic tomography. We have developed a setup for optoacoustic mesoscopy where we use a high frequency, high numerical aperture spherically focused ultrasound transducer, with a wide bandwidth of 25-125 MHz. The excitation is performed using a diode laser capable of >500 μJ/pulse, 1.8ns pulse width, 1.4 kHz pulse repetition rate, at 515 nm. The system is capable to penetrate more than 5 mm with a resolution of 7 μm axially and 30 μm transversally. Using high-speed stages and scanning the transducer in a quasi-continuous mode, a field of view of 2×2 mm2 is scanned in less than 2 minutes. The system is suitable for imaging biological samples that have a diameter of 1-5 mm; zebrafish, drosophila melanogaster, and thin biological samples such as the mouse ear and mouse extremities. We have used our mesoscopic setup to generate 3- dimensional images of genetically modified drosophila fly, and drosophila pupae expressing GFP from the wings, high resolution images were generated in both cases, in the fly we can see the wings, the legs, the eyes, and the shape of the body. In the pupae the outline of the pupae, the spiracles at both ends and a strong signal corresponding to the location of the future wings are observed.

  17. High Resolution Airborne Laser Scanning and Hyperspectral Imaging with a Small Uav Platform

    NASA Astrophysics Data System (ADS)

    Gallay, Michal; Eck, Christoph; Zgraggen, Carlo; Kaňuk, Ján; Dvorný, Eduard

    2016-06-01

    The capabilities of unmanned airborne systems (UAS) have become diverse with the recent development of lightweight remote sensing instruments. In this paper, we demonstrate our custom integration of the state-of-the-art technologies within an unmanned aerial platform capable of high-resolution and high-accuracy laser scanning, hyperspectral imaging, and photographic imaging. The technological solution comprises the latest development of a completely autonomous, unmanned helicopter by Aeroscout, the Scout B1-100 UAV helicopter. The helicopter is powered by a gasoline two-stroke engine and it allows for integrating 18 kg of a customized payload unit. The whole system is modular providing flexibility of payload options, which comprises the main advantage of the UAS. The UAS integrates two kinds of payloads which can be altered. Both payloads integrate a GPS/IMU with a dual GPS antenna configuration provided by OXTS for accurate navigation and position measurements during the data acquisition. The first payload comprises a VUX-1 laser scanner by RIEGL and a Sony A6000 E-Mount photo camera. The second payload for hyperspectral scanning integrates a push-broom imager AISA KESTREL 10 by SPECIM. The UAS was designed for research of various aspects of landscape dynamics (landslides, erosion, flooding, or phenology) in high spectral and spatial resolution.

  18. Analysis of high quality monatomic chromium films used in biological high resolution scanning electron microscopy.

    PubMed

    Apkarian, R P

    1994-01-01

    During the recent employment of field emission (FE) in-lens scanning electron microscopes (SEMs), refractory metal deposition technology has co-evolved to provide enhanced contrast of 1-10 nm hydrocarbon based biological structures imaged at high magnifications (> 200,000 times). Pioneer development employing the Penning sputter system in a high vacuum chamber proved that imaging of chromium (Cr) coated biological specimens contained enriched secondary electron (SE)-(I) contrasts. Single nanometer size fibrillar and particulate ectodomains within the context of complex biological membranes were accurately imaged without significant enlargement using the high resolution SE-I mode (HRSEM). This paper reports the transmission electron microscopy (TEM) testing of ultrathin (0.5-2.0 nm) Cr films deposited by planar magnetron sputter coating (PMSC). Essential parameters necessary to reproduce quality sputtered films of refractory metals used in HRSEM studies were described for the vacuum system and target operation conditions (current, voltage, and target distance). HRSEM imaging of biological specimens is presented to assess contrast attained from ultrathin fine grain Cr films deposited by PMSC. High magnification images were recorded to illustrate high quality contrasts attainable by HRSEM at low (1-5 kV) and high (10-30 kV) voltages. Dispersed molecules on formvar coated grids were sputter coated with a 1 nm thick Cr film before employing scanning transmission (STEM)/SEM modes of the FESEM to establish non-decorative image accuracy in the transmitted electron mode. PMID:7701300

  19. Large-Eddy Simulation of Inhomogeneous Canopy Flows Using High Resolution Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Schlegel, Fabian; Stiller, Jörg; Bienert, Anne; Maas, Hans-Gerd; Queck, Ronald; Bernhofer, Christian

    2012-02-01

    The effect of sub-tree forest heterogeneity in the flow past a clearing is investigated by means of large-eddy simulation (LES). For this purpose, a detailed representation of the canopy has been acquired by terrestrial laser scanning for a patch of approximately 190 m length in the field site "Tharandter Wald", near the city of Dresden, Germany. The scanning data are used to produce a high resolution plant area distribution (PAD) that is averaged over approximately one tree height (30 m) along the transverse direction, in order to simplify the LES study. Despite the smoothing involved with this procedure, the resulting two-dimensional PAD maintains a rich vertical and horizontal structure. For the LES study, the PAD is embedded in a larger domain covered with an idealized, horizontally homogeneous canopy. Simulations are performed for neutral conditions and compared to a LES with homogeneous PAD and recent field measurements. The results reveal a considerable influence of small-scale plant distribution on the mean velocity field as well as on turbulence data. Particularly near the edges of the clearing, where canopy structure is highly variable, usage of a realistic PAD appears to be crucial for capturing the local flow structure. Inside the forest, local variations in plant density induce a complex pattern of upward and downward motions, which remain visible in the mean flow and make it difficult to identify the "adjustment zone" behind the windward edge of the clearing.

  20. Simultaneous high-resolution scanning Bragg contrast and ptychographic imaging of a single solar cell nanowire

    PubMed Central

    Wallentin, Jesper; Wilke, Robin N.; Osterhoff, Markus; Salditt, Tim

    2015-01-01

    Simultaneous scanning Bragg contrast and small-angle ptychographic imaging of a single solar cell nanowire are demonstrated, using a nanofocused hard X-ray beam and two detectors. The 2.5 µm-long nanowire consists of a single-crystal InP core of 190 nm diameter, coated with amorphous SiO2 and polycrystalline indium tin oxide. The nanowire was selected and aligned in real space using the small-angle scattering of the 140 × 210 nm X-ray beam. The orientation of the nanowire, as observed in small-angle scattering, was used to find the correct rotation for the Bragg condition. After alignment in real space and rotation, high-resolution (50 nm step) raster scans were performed to simultaneously measure the distribution of small-angle scattering and Bragg diffraction in the nanowire. Ptychographic reconstruction of the coherent small-angle scattering was used to achieve sub-beam spatial resolution. The small-angle scattering images, which are sensitive to the shape and the electron density of all parts of the nanowire, showed a homogeneous profile along the nanowire axis except at the thicker head region. In contrast, the scanning Bragg diffraction microscopy, which probes only the single-crystal InP core, revealed bending and crystalline inhomogeneity. Both systematic and non-systematic real-space movement of the nanowire were observed as it was rotated, which would have been difficult to reveal only from the Bragg scattering. These results demonstrate the advantages of simultaneously collecting and analyzing the small-angle scattering in Bragg diffraction experiments. PMID:26664342

  1. Morphological Changes Along a Dike Landside Slope Sampled by 4d High Resolution Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Herrero-Huertaa, Mónica; Lindenbergh, Roderik; Ponsioen, Luc; van Damme, Myron

    2016-06-01

    Emergence of light detection and ranging (LiDAR) technology provides new tools for geomorphologic studies improving spatial and temporal resolution of data sampling hydrogeological instability phenomena. Specifically, terrestrial laser scanning (TLS) collects high resolution 3D point clouds allowing more accurate monitoring of erosion rates and processes, and thus, quantify the geomorphologic change on vertical landforms like dike landside slopes. Even so, TLS captures observations rapidly and automatically but unselectively. In this research, we demonstrate the potential of TLS for morphological change detection, profile creation and time series analysis in an emergency simulation for characterizing and monitoring slope movements in a dike. The experiment was performed near Schellebelle (Belgium) in November 2015, using a Leica Scan Station C10. Wave overtopping and overflow over a dike were simulated whereby the loading conditions were incrementally increased and 14 successful scans were performed. The aim of the present study is to analyse short-term morphological dynamic processes and the spatial distribution of erosion and deposition areas along a dike landside slope. As a result, we are able to quantify the eroded material coming from the impact on the terrain induced by wave overtopping which caused the dike failure in a few minutes in normal storm scenarios (Q = 25 l/s/m) as 1.24 m3. As this shows that the amount of erosion is measurable using close range techniques; the amount and rate of erosion could be monitored to predict dike collapse in emergency situation. The results confirm the feasibility of the proposed methodology, providing scalability to a comprehensive analysis over a large extension of a dike (tens of meters).

  2. CT imaging of the internal human ear: Test of a high resolution scanner

    NASA Astrophysics Data System (ADS)

    Bettuzzi, M.; Brancaccio, R.; Morigi, M. P.; Gallo, A.; Strolin, S.; Casali, F.; Lamanna, Ernesto; Ariù, Marilù

    2011-08-01

    During the course of 2009, in the framework of a project supported by the National Institute of Nuclear Physics, a number of tests were carried out at the Department of Physics of the University of Bologna in order to achieve a good quality CT scan of the internal human ear. The work was carried out in collaboration with the local “S. Orsola” Hospital in Bologna and a company (CEFLA) already involved in the production and commercialization of a CT scanner dedicated to dentistry. A laboratory scanner with a simple concept detector (CCD camera-lens-mirror-scintillator) was used to see to what extent it was possible to enhance the quality of a conventional CT scanner when examining the internal human ear. To test the system, some conventional measurements were made, such as the spatial resolution calculation with the MTF and dynamic range evaluation. Different scintillators were compared to select the most suitable for the purpose. With 0.5 mm thick structured cesium iodide and a field of view of 120×120 mm2, a spatial resolution of 6.5l p/mm at 5% MTF was obtained. The CT of a pair of human head phantoms was performed at an energy of 120 kVp. The first phantom was a rough representation of the human head shape, with soft tissue made of coarse slabs of Lucite. Some inserts, like small aluminum cylinders and cubes, with 1 mm diameter drilled holes, were used to simulate the channels that one finds inside the human inner ear. The second phantom is a plastic PVC fused head with a real human cranium inside. The bones in the cranium are well conserved and the inner ear features, such as the cochlea and semicircular channels, are clearly detectable. After a number of CT tests we obtained good results as far as structural representation and channel detection are concerned. Some images of the 3D rendering of the CT volume are shown below. The doctors of the local hospital who followed our experimentation expressed their satisfaction. The CT was compared to a virtual

  3. High-resolution adaptive optics scanning laser ophthalmoscope with dual deformable mirrors for large aberration correction

    SciTech Connect

    Chen, D; Jones, S M; Silva, D A; Olivier, S S

    2007-01-25

    Scanning laser ophthalmoscopes with adaptive optics (AOSLO) have been shown previously to provide a noninvasive, cellular-scale view of the living human retina. However, the clinical utility of these systems has been limited by the available deformable mirror technology. In this paper, we demonstrate that the use of dual deformable mirrors can effectively compensate large aberrations in the human retina, making the AOSLO system a viable, non-invasive, high-resolution imaging tool for clinical diagnostics. We used a bimorph deformable mirror to correct low-order aberrations with relatively large amplitudes. The bimorph mirror is manufactured by Aoptix, Inc. with 37 elements and 18 {micro}m stroke in a 10 mm aperture. We used a MEMS deformable mirror to correct high-order aberrations with lower amplitudes. The MEMS mirror is manufactured by Boston Micromachine, Inc with 144 elements and 1.5 {micro}m stroke in a 3 mm aperture. We have achieved near diffraction-limited retina images using the dual deformable mirrors to correct large aberrations up to {+-} 3D of defocus and {+-} 3D of cylindrical aberrations with test subjects. This increases the range of spectacle corrections by the AO systems by a factor of 10, which is crucial for use in the clinical environment. This ability for large phase compensation can eliminate accurate refractive error fitting for the patients, which greatly improves the system ease of use and efficiency in the clinical environment.

  4. Near-Field Scanning Optical Microscopy for High-Resolution Membrane Studies

    PubMed Central

    Huckabay, Heath A.; Armendariz, Kevin P.; Newhart, William H.; Wildgen, Sarah M.; Dunn, Robert C.

    2012-01-01

    The desire to directly probe biological structures on the length scales that they exist has driven the steady development of various high-resolution microscopy techniques. Among these, optical microscopy and, in particular, fluorescence-based approaches continue to occupy dominant roles in biological studies given their favorable attributes. Fluorescence microscopy is both sensitive and specific, is generally noninvasive toward biological samples, has excellent temporal resolution for dynamic studies, and is relatively inexpensive. Light-based microscopies can also exploit a myriad of contrast mechanisms based on spectroscopic signatures, energy transfer, polarization, and lifetimes to further enhance the specificity or information content of a measurement. Historically, however, spatial resolution has been limited to approximately half the wavelength due to the diffraction of light. Near-field scanning optical microscopy (NSOM) is one of several optical approaches currently being developed that combines the favorable attributes of fluorescence microscopy with superior spatial resolution. NSOM is particularly well suited for studies of both model and biological membranes and application to these systems is discussed. PMID:23086886

  5. Photoconductivity, High-resolution AFM, and Scanning Conductance Microscopy of Porphyrin Nanorods

    NASA Astrophysics Data System (ADS)

    Schwab, Alexander D.; Smith, Deirdre E.; Hone, James

    2005-03-01

    We have shown^1 that the diacid form of the porphyrin tetrakis(4-sulfonatophenyl) porphine (TPPS4) self assembles into nanorods with well-defined height and width. Upon illumination, their conductivity grows over hundreds of seconds. They also produce a zero-bias photocurrent with trainable polarity.^2 We present measurements as a function of illumination wavelength and intensity, which support a model of charge hopping along paths of previously photoionized porphyrin molecules. We also give results from Scanning Conductance Microscopy experiments; these are designed to clarify the role of the contacts in the DC measurements. Our high-resolution AFM images support the model of a hollow tube^3, which collapses on contact with the substrate. ^1A.D. Schwab et al., J. Phys. Chem. B 107, 11339 (2003). ^2A.D. Schwab et al., Nano Letters 4, 1261 (2004). ^3S.C.M. Gandini, E.L. Gelamo, R. Itri, and M. Tabak, Biophys. J. 85, 1259 (2003).

  6. Magnetic lens apparatus for use in high-resolution scanning electron microscopes and lithographic processes

    DOEpatents

    Crewe, Albert V.

    2000-01-01

    Disclosed are lens apparatus in which a beam of charged particlesis brought to a focus by means of a magnetic field, the lens being situated behind the target position. In illustrative embodiments, a lens apparatus is employed in a scanning electron microscopeas the sole lens for high-resolution focusing of an electron beam, and in particular, an electron beam having an accelerating voltage of from about 10 to about 30,000 V. In one embodiment, the lens apparatus comprises an electrically-conducting coil arranged around the axis of the beam and a magnetic pole piece extending along the axis of the beam at least within the space surrounded by the coil. In other embodiments, the lens apparatus comprises a magnetic dipole or virtual magnetic monopole fabricated from a variety of materials, including permanent magnets, superconducting coils, and magnetizable spheres and needles contained within an energy-conducting coil. Multiple-array lens apparatus are also disclosed for simultaneous and/or consecutive imaging of multiple images on single or multiple specimens. The invention further provides apparatus, methods, and devices useful in focusing charged particle beams for lithographic processes.

  7. High-resolution spin-polarized scanning electron microscopy (spin SEM).

    PubMed

    Kohashi, Teruo; Konoto, Makoto; Koike, Kazuyuki

    2010-01-01

    We have developed spin-polarized scanning electron microscopy (spin SEM) with a 5-nm resolution. The secondary electron optics is very important, as it needs to transfer a sufficient number of secondary electrons to the spin polarimeter, due to the low efficiency of the polarimeter. The optics was designed using a three-dimensional (3D) simulation program of the secondary electron trajectories, and it achieves highly efficient collection and transport of the secondary electrons even though the distance between the sample and the objective lens exit of the electron gun remains short. Moreover, the designed optics enables us to obtain clear SEM images in the spin SEM measurement and to precisely adjust the probe beam shape. These functions lead to images with high spatial resolution and sufficient signal-to-noise (S/N) ratios. This optics has been installed in an ultra-high vacuum (UHV) spin SEM chamber with a Schottky-type electron gun for the probe electron beam. We observed recorded bits on a perpendicular magnetic recording medium and visualized small irregularities in the bit shapes around the track edges and bit boundaries. The high resolution of 5 nm was demonstrated by observing the smallest domain composed by a single grain in the recording medium. PMID:19840986

  8. High-resolution X-ray computed tomography scanning of primate copulatory plugs.

    PubMed

    Parga, Joyce A; Maga, Murat; Overdorff, Deborah J

    2006-04-01

    In this study, high-resolution computed tomography X-ray scanning was used to scan ring-tailed lemur (Lemur catta) copulatory plugs. This method produced accurate measures of plug volume and surface area, but was not useful for visualizing plug internal structure. Copulatory plug size was of interest because it may relate to male fertilization success. Copulatory plugs form from coagulated ejaculate, and are routinely displaced in this species by the penis of a subsequent mate during copulation (Parga [2003] Int. J. Primatol. 24:889-899). Because one potential function of these plugs may be to preclude or delay other males' successful insemination of females, we tested the hypothesis that larger plugs are more difficult for subsequent males to displace. Plugs were collected opportunistically upon displacement during data collection on L. catta mating behavior on St. Catherines Island, Georgia (USA) during two subsequent breeding seasons. Copulatory plugs exhibited a wide range of volumes: 1,758-5,013.6 mm3 (n = 9). Intraindividual differences in plug volume were sometimes greater than interindividual differences. Contrary to predictions, larger plugs were not more time-consuming for males to displace via penile intromission during copulation. Nor were plugs with longer vaginal residence times notably smaller than plugs with shorter residence times, as might be expected if plugs disintegrate while releasing sperm (Asdell [1946] Patterns of Mammalian Reproduction; Ithaca: Comstock). We found a significant inverse correlation between number of copulatory mounts leading to ejaculation and copulatory plug volume. This may indicate that if males are sufficiently sexually aroused to reach ejaculation in fewer mounts, they tend to produce ejaculates of greater volume. PMID:16345065

  9. High-resolution scanning electron microscopy of frozen-hydrated cells.

    PubMed

    Walther, P; Chen, Y; Pech, L L; Pawley, J B

    1992-11-01

    Cryo-fixed yeast Paramecia and sea urchin embryos were investigated with an in-lens type field-emission SEM using a cold stage. The goal was to further develop and investigate the processing of frozen samples for the low-temperature scanning electron microscope (LTSEM). Uncoated frozen-hydrated samples were imaged with the low-voltage backscattered electron signal (BSE). Resolution and contrast were sufficient to visualize cross-fractured membranes, nuclear pores and small vesicles in the cytoplasm. It is assumed that the resolution of this approach is limited by the extraction depth of the BSE which depends upon the accelerating voltage of the primary beam (V0). In this study, the lowest possible V0 was 2.6 kV because below this value the sensitivity of the BSE detector is insufficient. It is concluded that the resolution of the uncoated specimen could be improved if equipment were available for high-resolution BSE imaging at 0.5-2 kV. Higher resolution was obtained with platinum cryo-coated samples, on which intramembranous particles were easily imaged. These images even show the ring-like appearance of the hexagonally arranged intramembranous particles known from high-resolution replica studies. On fully hydrated samples at high magnification, the observation time for a particular area is limited by mass loss caused by electron irradiation. Other potential sources of artefacts are the deposition of water vapour contamination and shrinkage caused by the sublimation of ice. Imaging of partially dehydrated (partially freeze-dried) samples, e.g. high-pressure frozen Paramecium and sea urchin embryos, will probably become the main application in cell biology. In spite of possible shrinkage problems, this approach has a number of advantages compared with any other electron microscopy preparation method: no chemical fixation is necessary, eliminating this source of artefacts; due to partial removal of the water additional structures in the cytoplasm can be investigated

  10. Scanning magnetic tunnel junction (MTJ) microscopy: High-resolution magnetic imaging of geologic samples

    NASA Astrophysics Data System (ADS)

    Lascu, I.; Harrison, R. J.

    2014-12-01

    characterised by spatial heterogeneity. In addition, the high-resolution capability of the MTJ microscope makes it extremely useful for investigating sedimentary archives formed under low accumulation conditions (e.g., speleothems, stromatolites, Fe-Mn nodules) that hold a detectable environmental magnetic signal.

  11. Exploring crystallization kinetics in natural rhyolitic melts using high resolution CT imagery of spherulites

    NASA Astrophysics Data System (ADS)

    Clow, T. W.; Befus, K. S.; Gardner, J. E.

    2014-12-01

    Little of our understanding of crystallization kinetics has been directly derived from studies of natural samples. We examine crystallization of rhyolitic melts by quantifying spherulite sizes and number densities in obsidian collected from Yellowstone caldera using high-resolution x-ray computed tomography (CT) imagery. Spherulites are spherical to ellipsoidal masses of intergrown alkali feldspar and quartz in a radiating, fibrous structure. They are thought to form in response to relatively rapid crystallization of melt in response to large amounts of undercooling. Recent research using compositional gradients that form outside of spherulites has suggested that they nucleate at 700 to 500 ˚C and their growth slows exponentially until it eventually ceases at ~400 ˚C. By quantifying spherulite textures, and using those temperature constraints, we derive new kinetic information regarding crystallization in natural rhyolitic systems. We find that spherulites range from 0.2 to 12.3 mm in diameter, and are 0.004 to 49.5 mm3 in volume. Such values generate number densities of 70 to 185 spherulites cm-3. Histograms of size display positively skewed distributions indicating small spherulites are far more abundant than larger ones. Those distributions imply nucleation rates change as a function of temperature. At higher temperatures where the melt is undercooled by 400-500 ˚C, nucleation is rare and growth is favored. With decreasing temperature, nucleation rates increase rapidly until cold enough temperatures are reached that diffusion limits crystallization and causes it to cease (undercoolings of ~650 ˚C). Assuming a cooling rate for the host obsidian of 10-5 ˚C s-1, then overall spherulite nucleation rates are 0.01 to 0.03 spherulites cm-3 hour-1.

  12. High-Resolution Scanning Tunneling Microscopy of Fully Hydrated Ripple-Phase Bilayers

    PubMed Central

    Woodward IV, J. T.; Zasadzinski, J. A.

    1997-01-01

    A modified freeze-fracture replication technique for use with the scanning tunneling microscope (STM) has provided a quantitative, high-resolution description of the waveform and amplitude of rippled bilayers in the Pβ, phase of dimyristoylphosphatidylcholine (DMPC) in excess water. The ripples are uniaxial and asymmetrical, with a temperature-dependent amplitude of 2.4 nm near the chain melting temperature that decreases to zero at the chain crystallization temperature. The wavelength of 11 nm does not change with temperature. The observed ripple shape and the temperature-induced structural changes are not predicted by any current theory. Calibration and reproducibility of the STM/replica technique were tested with replicas of well-characterized bilayers of cadmium arachidate on mica that provide regular 5.5-nm steps. STM images were analyzed using a cross-correlation averaging program to eliminate the effects of noise and the finite size and shapes of the metal grains that make up the replica. The correlation averaging allowed us to develop a composite ripple profile averaged over hundreds of individual ripples measured on different samples with different STM tips. The STM/replica technique avoids many of the previous artifacts of biological STM imaging and can be used to examine a variety of periodic hydrated lipid and protein samples at a lateral resolution of about 1 nm and a vertical resolution of about 0.3 nm. This resolution is superior to conventional and tapping mode AFM of soft biological materials; the technique is substrate-free, and the conductive and chemically uniform replicas make image interpretation simple and direct. ImagesFIGURE 1FIGURE 2FIGURE 3FIGURE 5 PMID:9017222

  13. Microstructure development in latex coatings: High-resolution cryo-scanning electron microscopy

    NASA Astrophysics Data System (ADS)

    Ge, Haiyan

    2005-07-01

    High-resolution cryogenic scanning electron microscopy (Cryo-SEM) was used to investigate microstructure development in drying latex coatings: from a colloidal stable suspension into a coherent strong film by drying. Useful sample preparation artifacts during the freeze-fracture, i.e., pullouts were documented and analyzed. Pullouts indicate both physical properties of latex particles and the drying stages in latex coatings. The mechanism of pullout formation was studied both theoretically and experimentally. Latex coatings must possess satisfactory freeze-thaw stability to avoid problems during transportation and storage in cold winter. The behavior of latex particles during freeze-thaw cycles was visualized by Cryo-SEM. The images indicated that high concentration of polymerizable surfactant in a latex suspension improved its freeze-thaw stability. In film formation, skinning was captured from edge in and top down in coatings of 80nm diameter styrene-butadiene latex particles with exceptional low Tg (-65°C). Effects on skinning of drying conditions and the way the latex was initially stabilized against flocculation were investigated. A skinned pocket was unexpectedly found in the coating. The cause of such a skin around the air bubble was explained by both simple models calculating the dissolution time and force analysis on the particles. The film formation processes in conventional and low volatile organic compound (VOC) latex coatings were compared by time-sectioning Cryo-SEM. Some low-VOC latex coatings were found to dry as fast as conventional ones without deteriorating final good film properties.

  14. Detection of Aspens Using High Resolution Aerial Laser Scanning Data and Digital Aerial Images

    PubMed Central

    Säynäjoki, Raita; Packalén, Petteri; Maltamo, Matti; Vehmas, Mikko; Eerikäinen, Kalle

    2008-01-01

    The aim was to use high resolution Aerial Laser Scanning (ALS) data and aerial images to detect European aspen (Populus tremula L.) from among other deciduous trees. The field data consisted of 14 sample plots of 30 m × 30 m size located in the Koli National Park in the North Karelia, Eastern Finland. A Canopy Height Model (CHM) was interpolated from the ALS data with a pulse density of 3.86/m2, low-pass filtered using Height-Based Filtering (HBF) and binarized to create the mask needed to separate the ground pixels from the canopy pixels within individual areas. Watershed segmentation was applied to the low-pass filtered CHM in order to create preliminary canopy segments, from which the non-canopy elements were extracted to obtain the final canopy segmentation, i.e. the ground mask was analysed against the canopy mask. A manual classification of aerial images was employed to separate the canopy segments of deciduous trees from those of coniferous trees. Finally, linear discriminant analysis was applied to the correctly classified canopy segments of deciduous trees to classify them into segments belonging to aspen and those belonging to other deciduous trees. The independent variables used in the classification were obtained from the first pulse ALS point data. The accuracy of discrimination between aspen and other deciduous trees was 78.6%. The independent variables in the classification function were the proportion of vegetation hits, the standard deviation of in pulse heights, accumulated intensity at the 90th percentile and the proportion of laser points reflected at the 60th height percentile. The accuracy of classification corresponded to the validation results of earlier ALS-based studies on the classification of individual deciduous trees to tree species.

  15. Work-function measurement by high-resolution scanning Kelvin nanoprobe

    NASA Astrophysics Data System (ADS)

    Cheran, Larisa-Emilia; Johnstone, Sherri; Sadeghi, Saman; Thompson, Michael

    2007-03-01

    Nanoscience promises to transform today's world in the same way that integrated semiconductor devices transformed the world of electronics and computation. In the post-genomic era, the greatest challenge is to make connections between the structures and functions of biomolecules at the nanometre-scale level in order to underpin the understanding of larger scale systems in the fields of human biology and physiology. To achieve this, instruments with new capabilities need to be researched and developed, with particular emphasis on new levels of sensitivity, precision and resolution for biomolecular analysis. This paper describes an instrument able to analyse structures that range from tenths of a nanometre (proteins, DNA) to micron-scale structures (living cells), which can be investigated non-destructively in their normal state and subsequently in chemical- or biochemical-modified conditions. The high-resolution scanning Kelvin nanoprobe (SKN) measures the work-function changes at molecular level, instigated by local charge reconfiguration due to translational motion of mobile charges, dipolar relaxation of bound charges, interfacial polarization and structural and conformational modifications. In addition to detecting surface electrical properties, the instrument offers, in parallel, the surface topographic image, with nanometre resolution. The instrument can also be used to investigate subtle work function/topography variations which occur in, for example, corrosion, contamination, adsorption and desorption of molecules, crystallographic studies, mechanical stress studies, surface photovoltaic studies, material science, biocompatibility studies, microelectronic characterization in semiconductor technology, oxide and thin films, surface processing and treatments, surfaces and interfaces characterization. This paper presents the design and development of the instrument, the basic principles of the method and the challenges involved to achieve nanometric resolution

  16. High resolution micro-CT of low attenuating organic materials using large area photon-counting detector

    NASA Astrophysics Data System (ADS)

    Kumpová, I.; Vavřík, D.; Fíla, T.; Koudelka, P.; Jandejsek, I.; Jakůbek, J.; Kytýř, D.; Zlámal, P.; Vopálenský, M.; Gantar, A.

    2016-02-01

    To overcome certain limitations of contemporary materials used for bone tissue engineering, such as inflammatory response after implantation, a whole new class of materials based on polysaccharide compounds is being developed. Here, nanoparticulate bioactive glass reinforced gelan-gum (GG-BAG) has recently been proposed for the production of bone scaffolds. This material offers promising biocompatibility properties, including bioactivity and biodegradability, with the possibility of producing scaffolds with directly controlled microgeometry. However, to utilize such a scaffold with application-optimized properties, large sets of complex numerical simulations using the real microgeometry of the material have to be carried out during the development process. Because the GG-BAG is a material with intrinsically very low attenuation to X-rays, its radiographical imaging, including tomographical scanning and reconstructions, with resolution required by numerical simulations might be a very challenging task. In this paper, we present a study on X-ray imaging of GG-BAG samples. High-resolution volumetric images of investigated specimens were generated on the basis of micro-CT measurements using a large area flat-panel detector and a large area photon-counting detector. The photon-counting detector was composed of a 010× 1 matrix of Timepix edgeless silicon pixelated detectors with tiling based on overlaying rows (i.e. assembled so that no gap is present between individual rows of detectors). We compare the results from both detectors with the scanning electron microscopy on selected slices in transversal plane. It has been shown that the photon counting detector can provide approx. 3× better resolution of the details in low-attenuating materials than the integrating flat panel detectors. We demonstrate that employment of a large area photon counting detector is a good choice for imaging of low attenuating materials with the resolution sufficient for numerical simulations.

  17. Mapping the electrostatic force field of single molecules from high-resolution scanning probe images

    NASA Astrophysics Data System (ADS)

    Hapala, Prokop; Švec, Martin; Stetsovych, Oleksandr; van der Heijden, Nadine J.; Ondráček, Martin; van der Lit, Joost; Mutombo, Pingo; Swart, Ingmar; Jelínek, Pavel

    2016-05-01

    How electronic charge is distributed over a molecule determines to a large extent its chemical properties. Here, we demonstrate how the electrostatic force field, originating from the inhomogeneous charge distribution in a molecule, can be measured with submolecular resolution. We exploit the fact that distortions typically observed in high-resolution atomic force microscopy images are for a significant part caused by the electrostatic force acting between charges of the tip and the molecule of interest. By finding a geometrical transformation between two high-resolution AFM images acquired with two different tips, the electrostatic force field or potential over individual molecules and self-assemblies thereof can be reconstructed with submolecular resolution.

  18. High-resolution CT analysis of facial struts in trauma: 1. Osseous and soft-tissue complications

    SciTech Connect

    Gentry, L.R.; Manor, W.F.; Turski, P.A.; Strother, C.M.

    1983-03-01

    In six cadavers, high-resolution thin-section computed tomography (CT) was used to evaluate the sequelae of experimentally produced facial trauma. As confirmed by pluridirectional tomography, CT was an effective imaging method for the detection and classification of facial fractures. The ability of CT to simultaneously depict both osseous and soft-tissue structures expands the role that diagnostic radiology can play in the evaluation of the traumatized face. A method of evaluation is presented in which the face is geometrically conceptualized as a series of triplanar (horizontal, sagittal, and coronal) osseous struts. Sequential, systematic assessment of each strut for fracture and its adjacent soft tissue for injury can facilitate evaluation of the traumatized face. Using this approach the osseous and soft-tissue complications arising from experimentally produced trauma are reviewed and illustrated with CT.

  19. Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation.

    PubMed

    Sakhalkar, H S; Oldham, M

    2008-01-01

    This study introduces a charge coupled device (CCD) area detector based optical-computed tomography (optical-CT) scanner for comprehensive verification of radiation dose distributions recorded in nonscattering radiochromic dosimeters. Defining characteristics include: (i) a very fast scanning time of approximately 5 min to acquire a complete three-dimensional (3D) dataset, (ii) improved image formation through the use of custom telecentric optics, which ensures accurate projection images and minimizes artifacts from scattered and stray-light sources, and (iii) high resolution (potentially 50 microm) isotropic 3D dose readout. The performance of the CCD scanner for 3D dose readout was evaluated by comparison with independent 3D readout from the single laser beam OCTOPUS-scanner for the same PRESAGE dosimeters. The OCTOPUS scanner was considered the "gold standard" technique in light of prior studies demonstrating its accuracy. Additional comparisons were made against calculated dose distributions from the ECLIPSE treatment-planning system. Dose readout for the following treatments were investigated: (i) a single rectangular beam irradiation to investigate small field and very steep dose gradient dosimetry away from edge effects, (ii) a 2-field open beam parallel-opposed irradiation to investigate dosimetry along steep dose gradients, and (iii) a 7-field intensity modulated radiation therapy (IMRT) irradiation to investigate dosimetry for complex treatment delivery involving modulation of fluence and for dosimetry along moderate dose gradients. Dose profiles, dose-difference plots, and gamma maps were employed to evaluate quantitative estimates of agreement between independently measured and calculated dose distributions. Results indicated that dose readout from the CCD scanner was in agreement with independent gold-standard readout from the OCTOPUS-scanner as well as the calculated ECLIPSE dose distribution for all treatments, except in regions within a few

  20. Characterising the Geomorphology of Forested Floodplains Using High Resolution Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Sear, D. A.; Brasington, J.; Darby, S. E.

    2007-12-01

    Forested floodplain environments represent the undisturbed land cover of most temperate and tropical river systems, but they are under threat from human resource management (Hughes et al., 2005, FLOBAR II Project report). A scientific understanding of forest floodplain processes therefore has relevance to ecosystem conservation and restoration, and the interpretation of pre-historic river and floodplain evolution. Empirical research has highlighted how overbank flows are relatively shallow and strongly modified by floodplain topography and the presence of vegetation and organic debris on the woodland floor [Jeffries et al., 2003, Geomorphology, 51, 61-80; Millington and Sear, 2007, Earth. Surf. Proc. Landforms, 32, doi: 10.1002/esp.1552]. In such instances flow blockage and diversions are common, and there is the possibility of frequent switches from sub-critical to locally super-critical flow. Such conditions also favour turbulence generation, both by wakes and by shear. Consequently, the floodplain terrain (where we take 'terrain' to include the underlying topography, root structures, and organic debris) plays a key role in modulating the processes of erosion and sedimentation that underpin the physical habitat diversity and hydraulic characteristics of complex wooded floodplain surfaces. However, despite the importance of these issues, as yet there are no formal, quantitative, descriptions of the highly complex and spatially diverse micro- and meso-topography that appears to be characteristic of forested floodplain surfaces. To address this gap, we have undertaken detailed surveys on a small floodplain reach within the Highland Water Research Catchment (HWRC: see http://www.geog.soton.ac.uk/research/nfrc/default.asp), which is a UK national reference site for lowland floodplain forest streams. This involved the deployment of a Leica ScanStation terrestrial laser-scanner from 14 setups and ranges of less than 30 m to acquire an extremely high resolution, accurate

  1. Differentiation of the ILO boundary chest roentgenograph (0/1 to 1/0) in asbestosis by high-resolution computed tomography scan, alveolitis, and respiratory impairment.

    PubMed

    Harkin, T J; McGuinness, G; Goldring, R; Cohen, H; Parker, J E; Crane, M; Naidich, D P; Rom, W N

    1996-01-01

    High-resolution computed tomography (HRCT) scans have been advocated as providing greater sensitivity in detecting parenchymal opacities in asbestos-exposed individuals, especially in the presence of pleural fibrosis, and having excellent inter- and intraobserver reader interpretation. We compared the 1980 International Labor Organization (ILO) International Classification of the Radiographs of the Pneumoconioses for asbestosis with the high-resolution CT scan using a grid scoring system to better differentiate normal versus abnormal in the ILO boundary 0/1 to 1/0 chest roentgenograph. We studied 37 asbestos-exposed individuals using the ILO classification, HRCT grid scores, respiratory symptom questionnaires, pulmonary function tests, and bronchoalveolar lavage. We used Pearson correlation coefficients to evaluate the linear relationship between outcome variables and each roentgenographic method. The normal HRCT scan proved to be an excellent predictor of "normality," with pulmonary function values close to 100% for forced vital capacity (FVC), forced expiratory volume in 1 second (FEV1), total lung capacity (TLC), and carbon monoxide diffusing capacity (DLCO) and no increase in BAL inflammatory cells. Concordant HRCT/ILO abnormalities were associated with reduced FEV1/FVC ratio, reduced diffusing capacity, and alveolitis consistent with a definition of asbestosis. In our study, the ILO classification and HRCT grid scores were both excellent modalities for the assessment of asbestosis and its association with impaired physiology and alveolitis, with their combined use providing statistical associations with alveolitis and reduced diffusing capacity. PMID:8871331

  2. Mapping the electrostatic force field of single molecules from high-resolution scanning probe images

    PubMed Central

    Hapala, Prokop; Švec, Martin; Stetsovych, Oleksandr; van der Heijden, Nadine J.; Ondráček, Martin; van der Lit, Joost; Mutombo, Pingo; Swart, Ingmar; Jelínek, Pavel

    2016-01-01

    How electronic charge is distributed over a molecule determines to a large extent its chemical properties. Here, we demonstrate how the electrostatic force field, originating from the inhomogeneous charge distribution in a molecule, can be measured with submolecular resolution. We exploit the fact that distortions typically observed in high-resolution atomic force microscopy images are for a significant part caused by the electrostatic force acting between charges of the tip and the molecule of interest. By finding a geometrical transformation between two high-resolution AFM images acquired with two different tips, the electrostatic force field or potential over individual molecules and self-assemblies thereof can be reconstructed with submolecular resolution. PMID:27230940

  3. Wavelength scanning digital interference holography for high-resolution ophthalmic imaging

    NASA Astrophysics Data System (ADS)

    Potcoava, Mariana C.; Kim, M. K.; Kay, Christine N.

    2009-02-01

    An improved digital interference holography (DIH) technique suitable for fundus images is proposed. This technique incorporates a dispersion compensation algorithm to compensate for the unknown axial length of the eye. Using this instrument we acquired successfully tomographic fundus images in human eye with narrow axial resolution less than 5μm. The optic nerve head together with the surrounding retinal vasculature were constructed. We were able to quantify a depth of 84μm between the retinal fiber and the retinal pigmented epithelium layers. DIH provides high resolution 3D information which could potentially aid in guiding glaucoma diagnosis and treatment.

  4. Data-fusion of high resolution X-ray CT, SEM and EDS for 3D and pseudo-3D chemical and structural characterization of sandstone.

    PubMed

    De Boever, Wesley; Derluyn, Hannelore; Van Loo, Denis; Van Hoorebeke, Luc; Cnudde, Veerle

    2015-07-01

    When dealing with the characterization of the structure and composition of natural stones, problems of representativeness and choice of analysis technique almost always occur. Since feature-sizes are typically spread over the nanometer to centimeter range, there is never one single technique that allows a rapid and complete characterization. Over the last few decades, high resolution X-ray CT (μ-CT) has become an invaluable tool for the 3D characterization of many materials, including natural stones. This technique has many important advantages, but there are also some limitations, including a tradeoff between resolution and sample size and a lack of chemical information. For geologists, this chemical information is of importance for the determination of minerals inside samples. We suggest a workflow for the complete chemical and structural characterization of a representative volume of a heterogeneous geological material. This workflow consists of combining information derived from CT scans at different spatial resolutions with information from scanning electron microscopy and energy-dispersive X-ray spectroscopy. PMID:25939085

  5. Integration of Point Clouds from Terrestrial Laser Scanning and Image-Based Matching for Generating High-Resolution Orthoimages

    NASA Astrophysics Data System (ADS)

    Salach, A.; Markiewicza, J. S.; Zawieska, D.

    2016-06-01

    An orthoimage is one of the basic photogrammetric products used for architectural documentation of historical objects; recently, it has become a standard in such work. Considering the increasing popularity of photogrammetric techniques applied in the cultural heritage domain, this research examines the two most popular measuring technologies: terrestrial laser scanning, and automatic processing of digital photographs. The basic objective of the performed works presented in this paper was to optimize the quality of generated high-resolution orthoimages using integration of data acquired by a Z+F 5006 terrestrial laser scanner and a Canon EOS 5D Mark II digital camera. The subject was one of the walls of the "Blue Chamber" of the Museum of King Jan III's Palace at Wilanów (Warsaw, Poland). The high-resolution images resulting from integration of the point clouds acquired by the different methods were analysed in detail with respect to geometric and radiometric correctness.

  6. CT Scans - Multiple Languages: MedlinePlus

    MedlinePlus

    ... 繁體中文) French (français) Hindi (हिन्दी) Japanese (日本語) Korean (한국어) Russian (Русский) Somali (af Soomaali) Spanish (español) ... スキャン - 日本語 (Japanese) Bilingual PDF Health Information Translations Korean (한국어) CT (Computerized Tomography) Scan CT 스캔 (전산화 ...

  7. Ga-68-DOTATOC: Feasibility of high throughput screening by small animal PET using a clinical high-resolution PET/CT scanner

    NASA Astrophysics Data System (ADS)

    Hofmann, Michael; Weitzel, Thilo; Krause, Thomas

    2006-12-01

    As radio peptide tracers have been developed in recent years for the high sensitive detection of neuroendocrine tumors, still the broad application of other peptides to breast and prostate cancer is missing. A rapid screening of new peptides can, in theory, be based on in vivo screening in animals by PET/CT. To test this hypothesis and to asses the minimum screening time needed per animal, we used the application of Ga-68-DOTATOC PET/CT in rats as test system. The Ga-68-DOTATOC yields in a hot spot imaging with minimal background. To delineate liver and spleen, we performed PET/CT of 10 animals on a SIEMENS Biograph 16 LSO HIGHREZ after intravenous injection of 1.5 MBq Ga-68-DOTATOC per animal. Animals were mounted in an '18 slot' holding device and scanned for a single-bed position. The emission times for the PET scan was varied from 1 to 20 min. The images were assessed first for "PET only" and afterwards in PET/CT fusion mode. The detection of the two organs was good at emission times down to 1 min in PET/CT fusion mode. In the "PET only" scans, the liver was clearly to be identified down to 1 min emission in all animals. But the spleen could only be delineated only by 1 min of emission in the PET/CT-fusion mode. In conclusion the screening of "hot spot" enriching peptides is feasible. "PET only" is in terms of delineation of small organs by far inferior to PET/CT fusion. If animal tumors are above a diameter of 10 mm small, animal PET/CT using clinical high resolution scanners will enable rapid screening. Even the determination of bio-distributions becomes feasible by using list mode tools. The time for the whole survey of 18 animals including anesthesia, preparation and mounting was approximately 20 min. By use of several holding devices mounted simultaneously, a survey time of less than 1 h for 180 animals can be expected.

  8. LandScan 2001 High-Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2002-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  9. High resolution dual detector volume-of-interest cone beam breast CT - Demonstration with a bench top system

    SciTech Connect

    Shen Youtao; Yi Ying; Zhong Yuncheng; Lai Chaojen; Liu Xinming; You Zhicheng; Ge Shuaiping; Wang Tianpeng; Shaw, Chris C.

    2011-12-15

    Purpose: In this study, we used a small field high resolution detector in conjunction with a full field flat panel detector to implement and investigate the dual detector volume-of-interest (VOI) cone beam breast computed tomography (CBCT) technique on a bench-top system. The potential of using this technique to image small calcifications without increasing the overall dose to the breast was demonstrated. Significant reduction of scatter components in the high resolution projection image data of the VOI was also shown. Methods: With the regular flat panel based CBCT technique, exposures were made at 80 kVp to generate an air kerma of 6 mGys at the isocenter. With the dual detector VOI CBCT technique, a high resolution small field CMOS detector was used to scan a cylindrical VOI (2.5 cm in diameter and height, 4.5 cm off-center) with collimated x-rays at four times of regular exposure level. A flat panel detector was used for full field scan with low x-ray exposures at half of the regular exposure level. The low exposure full field image data were used to fill in the truncated space in the VOI scan data and generate a complete projection image set. The Feldkamp-Davis-Kress (FDK) filtered backprojection algorithm was used to reconstruct high resolution images for the VOI. Two scanning techniques, one breast centered and the other VOI centered, were implemented and investigated. Paraffin cylinders with embedded thin aluminum (Al) wires were imaged and used in conjunction with optically stimulated luminescence (OSL) dose measurements to demonstrate the ability of this technique to image small calcifications without increasing the mean glandular dose (MGD). Results: Using exposures that produce an air kerma of 6 mGys at the isocenter, the regular CBCT technique was able to resolve the cross-sections of Al wires as thin as 254 {mu}m in diameter in the phantom. For the specific VOI studied, by increasing the exposure level by a factor of 4 for the VOI scan and reducing

  10. High-resolution dichroic imaging of magnetic flux distributions in superconductors with scanning x-ray microscopy

    SciTech Connect

    Ruoß, S. Stahl, C.; Weigand, M.; Schütz, G.; Albrecht, J.

    2015-01-12

    The penetration of magnetic flux into high-temperature superconductors has been observed using a high-resolution technique based on x-ray magnetic circular dichroism. Superconductors coated with thin soft-magnetic layers are observed in a scanning x-ray microscope under the influence of external magnetic fields. Resulting electric currents in the superconductor create an inhomogeneous magnetic field distribution above the superconductor and lead to a local reorientation of the ferromagnetic layer. Measuring the local magnetization of the ferromagnet by x-ray absorption microscopy with circular-polarized radiation allows the analysis of the magnetic flux distribution in the superconductor with a spatial resolution on the nanoscale.

  11. High-Resolution Imaging of Proteins in Human Teeth by Scanning Probe Microscopy

    SciTech Connect

    Gruverman, A.; Wu, D.; Rodriguez, Brian J; Kalinin, Sergei V; Habelitz, S.

    2007-01-01

    High-resolution studies of dental tissues are of considerable interest for biomedical engineering and clinical applications. In this paper, we demonstrate the application of piezoresponse force microscopy (PFM) to nanoscale imaging of internal structure of human teeth by monitoring the local mechanical response to an electrical bias applied via a conductive tip. It is shown that PFM is capable of detecting dissimilar components of dental tissues, namely, proteins and calcified matrix, which have resembling morphology but different piezoelectric properties. It is demonstrated that collagen fibrils revealed in chemically treated intertubular dentin exhibit high piezoelectric activity and can be visualized in PFM with spatial resolution of 10 nm. Evidence of the presence of protein inclusions of 100-200 nm wide and several micrometers long in tooth enamel has been obtained. Furthermore, it is found that the peritubular dentin and intertubular dentin exhibit different piezoelectric behavior suggesting different concentration of collagen fibrils. The obtained results demonstrate a high potential of PFM in providing an additional insight into the structure of dental tissues. It is suggested that the PFM approach can be used to study the structure of a wide range of biological materials by monitoring their electromechanical behavior at the nanoscale.

  12. Method and apparatus for a high-resolution three dimensional confocal scanning transmission electron microscope

    DOEpatents

    de Jonge, Niels [Oak Ridge, TN

    2010-08-17

    A confocal scanning transmission electron microscope which includes an electron illumination device providing an incident electron beam propagating in a direction defining a propagation axis, and a precision specimen scanning stage positioned along the propagation axis and movable in at least one direction transverse to the propagation axis. The precision specimen scanning stage is configured for positioning a specimen relative to the incident electron beam. A projector lens receives a transmitted electron beam transmitted through at least part of the specimen and focuses this transmitted beam onto an image plane, where the transmitted beam results from the specimen being illuminated by the incident electron beam. A detection system is placed approximately in the image plane.

  13. Rapid high resolution imaging with a dual-channel scanning technique.

    PubMed

    de Castro, Alberto; Huang, Gang; Sawides, Lucie; Luo, Ting; Burns, Stephen A

    2016-04-15

    A spatial shift between channels in a dual-beam raster-scan imaging system introduces a temporal separation between images from the two channels that can be much shorter than the frame rate of the system. The technique is demonstrated by measuring the velocity of erythrocytes in the retinal capillaries. We used an adaptive optics scanning laser ophthalmoscope and introduced a temporal separation between imaging channels of 4.7 ms. We imaged three subjects and measured changing capillary blood flow velocity at the pulse rate. Since the time shift between channels is easily and continuously adjustable, this method can be used to measure rapidly changing events in any raster scan system with little added complexity. PMID:27082369

  14. Scanning magnetic tunnel junction microscope for high-resolution imaging of remanent magnetization fields

    NASA Astrophysics Data System (ADS)

    Lima, E. A.; Bruno, A. C.; Carvalho, H. R.; Weiss, B. P.

    2014-10-01

    Scanning magnetic microscopy is a new methodology for mapping magnetic fields with high spatial resolution and field sensitivity. An important goal has been to develop high-performance instruments that do not require cryogenic technology due to its high cost, complexity, and limitation on sensor-to-sample distance. Here we report the development of a low-cost scanning magnetic microscope based on commercial room-temperature magnetic tunnel junction (MTJ) sensors that typically achieves spatial resolution better than 7 µm. By comparing different bias and detection schemes, optimal performance was obtained when biasing the MTJ sensor with a modulated current at 1.0 kHz in a Wheatstone bridge configuration while using a lock-in amplifier in conjunction with a low-noise custom-made preamplifier. A precision horizontal (x-y) scanning stage comprising two coupled nanopositioners controls the position of the sample and a linear actuator adjusts the sensor-to-sample distance. We obtained magnetic field sensitivities better than 150 nT/Hz1/2 between 0.1 and 10 Hz, which is a critical frequency range for scanning magnetic microscopy. This corresponds to a magnetic moment sensitivity of 10-14 A m2, a factor of 100 better than achievable with typical commercial superconducting moment magnetometers. It also represents an improvement in sensitivity by a factor between 10 and 30 compared to similar scanning MTJ microscopes based on conventional bias-detection schemes. To demonstrate the capabilities of the instrument, two polished thin sections of representative geological samples were scanned along with a synthetic sample containing magnetic microparticles. The instrument is usable for a diversity of applications that require mapping of samples at room temperature to preserve magnetic properties or viability, including paleomagnetism and rock magnetism, nondestructive evaluation of materials, and biological assays.

  15. CT Scans - Multiple Languages: MedlinePlus

    MedlinePlus

    ... List of All Topics All CT Scans - Multiple Languages To use the sharing features on this page, please enable JavaScript. Arabic (العربية) Chinese - Simplified (简体中文) Chinese - Traditional (繁體中文) French ( ...

  16. Spectral deblurring: an algorithm for high-resolution, hybrid spectral CT

    NASA Astrophysics Data System (ADS)

    Clark, D. P.; Badea, C. T.

    2015-03-01

    We are developing a hybrid, dual-source micro-CT system based on the combined use of an energy integrating (EID) x-ray detector and a photon counting x-ray detector (PCXD). Due to their superior spectral resolving power, PCXDs have the potential to reduce radiation dose and to enable functional and molecular imaging with CT. In most current PCXDs, however, spatial resolution and field of view are limited by hardware development and charge sharing effects. To address these problems, we propose spectral deblurring—a relatively simple algorithm for increasing the spatial resolution of hybrid, spectral CT data. At the heart of the algorithm is the assumption that the underlying CT data is piecewise constant, enabling robust recovery in the presence of noise and spatial blur by enforcing gradient sparsity. After describing the proposed algorithm, we summarize simulation experiments which assess the trade-offs between spatial resolution, contrast, and material decomposition accuracy given realistic levels of noise. When the spatial resolution between imaging chains has a ratio of 5:1, spectral deblurring results in a 52% increase in the material decomposition accuracy of iodine, gadolinium, barium, and water vs. linear interpolation. For a ratio of 10:1, a realistic representation of our hybrid imaging system, a 52% improvement was also seen. Overall, we conclude that the performance breaks down around high frequency and low contrast structures. Following the simulation experiments, we apply the algorithm to ex vivo data acquired in a mouse injected with an iodinated contrast agent and surrounded by vials of iodine, gadolinium, barium, and water.

  17. Characterization of rock thermal conductivity by high-resolution optical scanning

    USGS Publications Warehouse

    Popov, Y.A.; Pribnow, D.F.C.; Sass, J.H.; Williams, C.F.; Burkhardt, H.

    1999-01-01

    We compared thress laboratory methods for thermal conductivity measurements: divided-bar, line-source and optical scanning. These methods are widely used in geothermal and petrophysical studies, particularly as applied to research on cores from deep scientific boreholes. The relatively new optical scanning method has recently been perfected and applied to geophysical problems. A comparison among these methods for determining the thermal conductivity tensor for anisotropic rocks is based on a representative collection of 80 crystalline rock samples from the KTB continental deep borehole (Germany). Despite substantial thermal inhomogeneity of rock thermal conductivity (up to 40-50% variation) and high anisotropy (with ratios of principal values attaining 2 and more), the results of measurements agree very well among the different methods. The discrepancy for measurements along the foliation is negligible (<1%). The component of thermal conductivity normal to the foliation reveals somewhat larger differences (3-4%). Optical scanning allowed us to characterize the thermal inhomogeneity of rocks and to identify a three-dimensional anisotropy in thermal conductivity of some gneiss samples. The merits of optical scanning include minor random errors (1.6%), the ability to record the variation of thermal conductivity along the sample, the ability to sample deeply using a slow scanning rate, freedom from constraints for sample size and shape, and quality of mechanical treatment of the sample surface, a contactless mode of measurement, high speed of operation, and the ability to measure on a cylindrical sample surface. More traditional methods remain superior for characterizing bulk conductivity at elevated temperature.Three laboratory methods including divided-bar, line-source and optical scanning are widely applied in geothermal and petrophysical studies. In this study, these three methods were compared for determining the thermal conductivity tensor for anisotropic rocks

  18. Galileo PPR at Io: High Resolution Scans Taken in Conjunction with SSA and NIMS Data

    NASA Technical Reports Server (NTRS)

    Rathbun, J. A.; Spencer, J. R.; Tamppari, L. K.; Martin, T. Z.; Barnard, L.; Travis, L. D.

    2003-01-01

    The Galileo Photopolarimeter-Radiometer (PPR), when used in the radiometry mode which is most often used at Io, is a long-wavelength infrared single-aperture photometer. It is sensitive to temperatures from about 60 to several hundred K, and is thus useful for studying the volcanoes and background temperatures on Io. PPR can take raster scan images when it is the primary instrument being used (these data were discussed last year, see Rathbun et al., 2002). It can also take data in ride-along mode in conjunction with another remote sensing instrument (either SSI or NIMS) producing one-dimensional temperature scans. The best data of this type were taken during the close approach flybys during orbits I24, I25, I27, I31, I32, and I33 and include measurements of the volcanoes Pele, Prometheus, Pillan, Zamama, Tvashtar, Daedalus, Amarani, Gish Bar, Isum, Emakong, Tupan, and Tohil.

  19. High resolution imaging and elemental analysis of PAGE electrophoretograms by scanning proton microprobe

    NASA Astrophysics Data System (ADS)

    Szőkefalvi-Nagy, Z.; Kocsonya, A.; Kovács, I.; Hopff, D.; Lüthje, S.; Niecke, M.

    2009-06-01

    Metal content of metalloproteins can be detected and even quantified by the PIXE-PAGE method. In this technique the proteins are separated by thin layer electrophoresis (by polyacrylamide gel electrophoresis (PAGE) in most cases) and the properly dried gel sections are analyzed by PIXE using "band-shaped" proton milli-beam. This PIXE-PAGE method was adapted for our scanning proton microprobe. The microPIXE-PAGE version provides two-dimensional elemental mapping of the protein bands. In addition, the fast continuous scanning reduces the risk of the thermal deterioration of the sample and the X-ray contribution from dust-impurities can be filtered out in the data evaluation process.

  20. A scanning Hall probe microscope for high resolution magnetic imaging down to 300 mK

    SciTech Connect

    Khotkevych, V. V.; Bending, S. J.; Milosevic, M. V.

    2008-12-15

    We present the design, construction, and performance of a low-temperature scanning Hall probe microscope with submicron lateral resolution and a large scanning range. The detachable microscope head is mounted on the cold flange of a commercial {sup 3}He-refrigerator (Oxford Instruments, Heliox VT-50) and operates between room temperature and 300 mK. It is fitted with a three-axis slip-stick nanopositioner that enables precise in situ adjustment of the probe location within a 6x6x7 mm{sup 3} space. The local magnetic induction at the sample surface is mapped with an easily changeable microfabricated Hall probe [typically GsAs/AlGaAs or AlGaAs/InGaAs/GaAs Hall sensors with integrated scanning tunnel microscopy (STM) tunneling tips] and can achieve minimum detectable fields {>=}10 mG/Hz{sup 1/2}. The Hall probe is brought into very close proximity to the sample surface by sensing and controlling tunnel currents at the integrated STM tip. The instrument is capable of simultaneous tunneling and Hall signal acquisition in surface-tracking mode. We illustrate the potential of the system with images of superconducting vortices at the surface of a Nb thin film down to 372 mK, and also of labyrinth magnetic-domain patterns of an yttrium iron garnet film captured at room temperature.

  1. A scanning Hall probe microscope for high resolution magnetic imaging down to 300 mK

    NASA Astrophysics Data System (ADS)

    Khotkevych, V. V.; Milošević, M. V.; Bending, S. J.

    2008-12-01

    We present the design, construction, and performance of a low-temperature scanning Hall probe microscope with submicron lateral resolution and a large scanning range. The detachable microscope head is mounted on the cold flange of a commercial H3e-refrigerator (Oxford Instruments, Heliox VT-50) and operates between room temperature and 300 mK. It is fitted with a three-axis slip-stick nanopositioner that enables precise in situ adjustment of the probe location within a 6×6×7 mm3 space. The local magnetic induction at the sample surface is mapped with an easily changeable microfabricated Hall probe [typically GsAs/AlGaAs or AlGaAs/InGaAs/GaAs Hall sensors with integrated scanning tunnel microscopy (STM) tunneling tips] and can achieve minimum detectable fields ⩾10 mG/Hz1/2. The Hall probe is brought into very close proximity to the sample surface by sensing and controlling tunnel currents at the integrated STM tip. The instrument is capable of simultaneous tunneling and Hall signal acquisition in surface-tracking mode. We illustrate the potential of the system with images of superconducting vortices at the surface of a Nb thin film down to 372 mK, and also of labyrinth magnetic-domain patterns of an yttrium iron garnet film captured at room temperature.

  2. Imaging interactions of metal oxide nanoparticles with macrophage cells by ultra-high resolution scanning electron microscopy techniques†

    PubMed Central

    Plascencia-Villa, Germán; Starr, Clarise R.; Armstrong, Linda S.; Ponce, Arturo

    2016-01-01

    Use of engineered metal oxide nanoparticles in a plethora of biological applications and custom products has warned about some possible dose-dependent cytotoxic effects. Macrophages are key components of the innate immune system used to study possible toxic effects and internalization of different nanoparticulate materials. In this work, ultra-high resolution field emission scanning electron microscopy (FE-SEM) was used to offer new insights into the dynamical processes of interaction of nanomaterials with macrophage cells dosed with different concentrations of metal oxide nanoparticles (CeO2, TiO2 and ZnO). The versatility of FE-SEM has allowed obtaining a detailed characterization of processes of adsorption and endocytosis of nanoparticles, by using advanced analytical and imaging techniques on complete unstained uncoated cells, including secondary electron imaging, high-sensitive backscattered electron imaging, X-ray microanalysis and stereoimaging. Low voltage BF/DF-STEM confirmed nanoparticle adsorption and internalization into endosomes of CeO2 and TiO2, whereas ZnO develop apoptosis after 24 h of interaction caused by dissolution and invasion of cell nucleus. Ultra-high resolution scanning electron microscopy techniques provided new insights into interactions of inorganic nanoparticles with macrophage cells with high spatial resolution. PMID:23023106

  3. High-Resolution CT and Angiographic Evaluation of NexStent Wall Adaptation

    SciTech Connect

    Nemes, Balazs Lukacs, Levente; Balazs, Gyoergy; Dosa, Edit; Berczi, Viktor; Huettl, Kalman

    2009-05-15

    Carotid stenting is a minimally invasive treatment for extracranial carotid artery stenosis. Stent design may affect technical success and complications in a certain subgroup of patients. We examined the wall adaptability of a new closed-cell carotid stent (NexStent), which has a unique rolled sheet design. Forty-one patients had 42 carotid arteries treated with angioplasty and stenting for internal carotid artery stenosis. The mean patient age was 65 {+-} 10 years. All patients underwent high-resolution computed tomographic angiography after the stent implantation. Data analysis included pre- and postprocedural stenosis, procedure complications, plaque calcification, and stent apposition. We reviewed the angiographic and computed tomographic images for plaque coverage and stent expansion. All procedures were technically successful. Mean stenosis was reduced from 84 {+-} 8% before the procedure to 15.7 {+-} 7% after stenting. Two patients experienced transient ischemic attack; one patient had bradycardia and hypotension. Stent induced kinking was observed in one case. Good plaque coverage and proper overlapping of the rolled sheet was achieved in all cases. There was weak correlation between the residual stenosis and the amount of calcification. The stent provides adequate expansion and adaptation to the tapering anatomy of the bifurcation.

  4. High-resolution sagittal and coronal reformatted CT images of the larynx

    SciTech Connect

    Silverman, P.M.; Johnson, G.A.; Korobkin, M.

    1983-04-01

    Computed tomography has become the major technique for evaluation of patients with laryngeal corcinoma and trauma to the larynx. The routine examination usually consists of 5 mm contiguous selection through the larynx in quiet respiration. Reformatted images obtained from these sections have not been of clinical value, in part because of the poor resolution of these images. In the past, thin-section scanning (1.5 mm collimation) has been impractical because of the significant time required to scan the entire larynx. By using the technique of rapid sequential scanning with automated table incrementation this logistic difficulty can be overcome, and the total thin-section examination may be performed in less than 9 min. Sophisticated computer software allows rapid reformatting of transaxial images in sagittal and coronal planes. This report illustates the normal and abnormal appearance of the larynx on coronal and sagittal reformatted images and compares reformatted images using the routine technique to those using the thin-section technique.

  5. Characterization of microfabricated probes for combined atomic force and high-resolution scanning electrochemical microscopy.

    PubMed

    Gullo, Maurizio R; Frederix, Patrick L T M; Akiyama, Terunobu; Engel, Andreas; deRooij, Nico F; Staufer, Urs

    2006-08-01

    A combined atomic force and scanning electrochemical microscope probe is presented. The probe is electrically insulated except at the very apex of the tip, which has a radius of curvature in the range of 10-15 nm. Steady-state cyclic voltammetry measurements for the reduction of Ru(NH3)6Cl3 and feedback experiments showed a distinct and reproducible response of the electrode. These experimental results agreed with finite element simulations for the corresponding diffusion process. Sequentially topographical and electrochemical studies of Pt lines deposited onto Si3N4 and spaced 100 nm apart (edge to edge) showed a lateral electrochemical resolution of 10 nm. PMID:16878880

  6. High-resolution adaptive optics scanning laser ophthalmoscope with multiple deformable mirrors

    DOEpatents

    Chen, Diana C.; Olivier, Scot S.; Jones; Steven M.

    2010-02-23

    An adaptive optics scanning laser ophthalmoscopes is introduced to produce non-invasive views of the human retina. The use of dual deformable mirrors improved the dynamic range for correction of the wavefront aberrations compared with the use of the MEMS mirror alone, and improved the quality of the wavefront correction compared with the use of the bimorph mirror alone. The large-stroke bimorph deformable mirror improved the capability for axial sectioning with the confocal imaging system by providing an easier way to move the focus axially through different layers of the retina.

  7. Laser Scanning for the definition of high resolution topography in the Apuan Alps (IT) marble district

    NASA Astrophysics Data System (ADS)

    Riccucci, Silvia; Salvini, Riccardo; Francioni, Mirko

    2010-05-01

    The present paper describes the results of five laser scanning surveys performed by a Leica™ ScanStation2 with the aim of producing an high definition topography of a quarry, at the scale of 1:1,000. The project comes from a joint research carried out by the Authors in collaboration with the Local Sanitary Unit Agency (ASL n.1) of Massa and Carrara (IT). The main objective of this work has been the survey of both the exploited quarry walls and the upper residual and natural slopes. The area of interest is characterized by several quarry fronts which develop to variable and alternate directions to create very evident rock spurs, from NW-SE to NE-SW trending for a total wideness of about 2 hectares. Moreover, the quarry walls are sub-vertical and sometimes overhang by a total height of 100 m in respect to the quarry floor. Differential GPS and orthometric correction have been applied in order to co-register and to georeference the five point clouds; for these purposes a series of optical targets have been measured using a Laser Total Station. The subsequent phase has been the mesh construction and editing, from which a topographic map, 25 cm equidistance contours lines, has been created. The planimetric map shows the position and the geometry of crests, banks, escarpments, walls and all others exploitation features and the characteristics of the upper natural slopes. Morphological profiles along the maximum slope have been realized in order to better plan the future extractive activities according to the regional law. In order to make easier the prospective observation of detailed and overall areas, 3D views of multi-directional orientation have been realized. The produced data has been published by using the free LeicaTM TruView plug-in for Internet Explorer in a way to easily view the photographs and to measure the laser scan point clouds. Processing results have highlighted the higher spatial resolution of data coming from laser scanning in respect to the

  8. Line-scanning confocal microscopy for high-resolution imaging of upconverting rare-earth-based contrast agents.

    PubMed

    Higgins, Laura M; Zevon, Margot; Ganapathy, Vidya; Sheng, Yang; Tan, Mei Chee; Riman, Richard E; Roth, Charles M; Moghe, Prabhas V; Pierce, Mark C

    2015-11-01

    Rare-earth (RE) doped nanocomposites emit visible luminescence when illuminated with continuous wave near-infrared light, making them appealing candidates for use as contrast agents in biomedical imaging. However, the emission lifetime of these materials is much longer than the pixel dwell times used in scanning intravital microscopy. To overcome this limitation, we have developed a line-scanning confocal microscope for high-resolution, optically sectioned imaging of samples labeled with RE-based nanomaterials. Instrument performance is quantified using calibrated test objects. NaYF4 : Er,Yb nanocomposites are imaged in vitro, and in ex vivo tissue specimens, with direct comparison to point-scanning confocal microscopy. We demonstrate that the extended pixel dwell time of line-scanning confocal microscopy enables subcellular-level imaging of these nanomaterials while maintaining optical sectioning. The line-scanning approach thus enables microscopic imaging of this emerging class of contrast agents for preclinical studies, with the potential to be adapted for real-time in vivo imaging in the clinic. PMID:26603495

  9. Line-scanning confocal microscopy for high-resolution imaging of upconverting rare-earth-based contrast agents

    NASA Astrophysics Data System (ADS)

    Higgins, Laura M.; Zevon, Margot; Ganapathy, Vidya; Sheng, Yang; Tan, Mei Chee; Riman, Richard E.; Roth, Charles M.; Moghe, Prabhas V.; Pierce, Mark C.

    2015-11-01

    Rare-earth (RE) doped nanocomposites emit visible luminescence when illuminated with continuous wave near-infrared light, making them appealing candidates for use as contrast agents in biomedical imaging. However, the emission lifetime of these materials is much longer than the pixel dwell times used in scanning intravital microscopy. To overcome this limitation, we have developed a line-scanning confocal microscope for high-resolution, optically sectioned imaging of samples labeled with RE-based nanomaterials. Instrument performance is quantified using calibrated test objects. NaYF4:Er,Yb nanocomposites are imaged in vitro, and in ex vivo tissue specimens, with direct comparison to point-scanning confocal microscopy. We demonstrate that the extended pixel dwell time of line-scanning confocal microscopy enables subcellular-level imaging of these nanomaterials while maintaining optical sectioning. The line-scanning approach thus enables microscopic imaging of this emerging class of contrast agents for preclinical studies, with the potential to be adapted for real-time in vivo imaging in the clinic.

  10. High resolution scanning photoluminescence characterization of semi-insulating GaAs using a laser scanning microscope

    NASA Astrophysics Data System (ADS)

    Marek, J.; Elliot, A. G.; Wilke, V.; Geiss, R.

    1986-12-01

    Spatially resolved photoluminescence properties of semi-insulating, liquid encapsulated Czochralski-grown GaAs substrates are analyzed with a laser scanning microscope. The improved resolution of the laser scanning microscope results in the observation of single dislocations within the subgrain boundaries of the polyganized dislocation cell network for the first time by photoluminescence. Both the cell structure and the Cottrell cloud are clearly resolved.

  11. Comparison of quantitative myocardial perfusion imaging CT to fluorescent microsphere-based flow from high-resolution cryo-images

    NASA Astrophysics Data System (ADS)

    Eck, Brendan L.; Fahmi, Rachid; Levi, Jacob; Fares, Anas; Wu, Hao; Li, Yuemeng; Vembar, Mani; Dhanantwari, Amar; Bezerra, Hiram G.; Wilson, David L.

    2016-03-01

    Myocardial perfusion imaging using CT (MPI-CT) has the potential to provide quantitative measures of myocardial blood flow (MBF) which can aid the diagnosis of coronary artery disease. We evaluated the quantitative accuracy of MPI-CT in a porcine model of balloon-induced LAD coronary artery ischemia guided by fractional flow reserve (FFR). We quantified MBF at baseline (FFR=1.0) and under moderate ischemia (FFR=0.7) using MPI-CT and compared to fluorescent microsphere-based MBF from high-resolution cryo-images. Dynamic, contrast-enhanced CT images were obtained using a spectral detector CT (Philips Healthcare). Projection-based mono-energetic images were reconstructed and processed to obtain MBF. Three MBF quantification approaches were evaluated: singular value decomposition (SVD) with fixed Tikhonov regularization (ThSVD), SVD with regularization determined by the L-Curve criterion (LSVD), and Johnson-Wilson parameter estimation (JW). The three approaches over-estimated MBF compared to cryo-images. JW produced the most accurate MBF, with average error 33.3+/-19.2mL/min/100g, whereas LSVD and ThSVD had greater over-estimation, 59.5+/-28.3mL/min/100g and 78.3+/-25.6 mL/min/100g, respectively. Relative blood flow as assessed by a flow ratio of LAD-to-remote myocardium was strongly correlated between JW and cryo-imaging, with R2=0.97, compared to R2=0.88 and 0.78 for LSVD and ThSVD, respectively. We assessed tissue impulse response functions (IRFs) from each approach for sources of error. While JW was constrained to physiologic solutions, both LSVD and ThSVD produced IRFs with non-physiologic properties due to noise. The L-curve provided noise-adaptive regularization but did not eliminate non-physiologic IRF properties or optimize for MBF accuracy. These findings suggest that model-based MPI-CT approaches may be more appropriate for quantitative MBF estimation and that cryo-imaging can support the development of MPI-CT by providing spatial distributions of MBF.

  12. High-resolution, lensless endoscope based on digital scanning through a multimode optical fiber.

    PubMed

    Papadopoulos, Ioannis N; Farahi, Salma; Moser, Christophe; Psaltis, Demetri

    2013-02-01

    We propose and experimentally demonstrate an ultra-thin rigid endoscope (450 μm diameter) based on a passive multimode optical fiber. We use digital phase conjugation to overcome the modal scrambling of the fiber to tightly focus and scan the laser light at its distal end. By exploiting the maximum number of modes available, sub-micron resolution, high quality fluorescence images of neuronal cells were acquired. The imaging system is evaluated in terms of fluorescence collection efficiency, resolution and field of view. The small diameter of the proposed endoscope, along with its high quality images offer an opportunity for minimally invasive medical endoscopic imaging and diagnosis based on cellular phenotype via direct tissue penetration. PMID:23411747

  13. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale.

    PubMed

    Zackrisson, Martin; Hallin, Johan; Ottosson, Lars-Göran; Dahl, Peter; Fernandez-Parada, Esteban; Ländström, Erik; Fernandez-Ricaud, Luciano; Kaferle, Petra; Skyman, Andreas; Stenberg, Simon; Omholt, Stig; Petrovič, Uroš; Warringer, Jonas; Blomberg, Anders

    2016-01-01

    The capacity to map traits over large cohorts of individuals-phenomics-lags far behind the explosive development in genomics. For microbes, the estimation of growth is the key phenotype because of its link to fitness. We introduce an automated microbial phenomics framework that delivers accurate, precise, and highly resolved growth phenotypes at an unprecedented scale. Advancements were achieved through the introduction of transmissive scanning hardware and software technology, frequent acquisition of exact colony population size measurements, extraction of population growth rates from growth curves, and removal of spatial bias by reference-surface normalization. Our prototype arrangement automatically records and analyzes close to 100,000 growth curves in parallel. We demonstrate the power of the approach by extending and nuancing the known salt-defense biology in baker's yeast. The introduced framework represents a major advance in microbial phenomics by providing high-quality data for extensive cohorts of individuals and generating well-populated and standardized phenomics databases. PMID:27371952

  14. High resolution chemical mapping via scanning transmission x-ray microscopy

    NASA Astrophysics Data System (ADS)

    Fleckenstein, Holger

    Scanning transmission x-ray microscopy (STXM) combines imaging at sub-50 nanometer spatial resolution in the soft x-ray region with x-ray absorption spectroscopy at an energy resolution of 0.1 eV and better. The sensitivity to light elements and their chemical bonding states in the near-edge x-ray absorption region together with 2D microscopy allow to map out the chemical composition of microscopic samples. Over the past decades STXM has been used by scientists from various fields such as material sciences, biology, earth and environmental sciences. This thesis describes the upgrade of the STXM microscopes at the National Synchrotron Light Source in Brookhaven National Laboratory. The now 5 th generation was a retrofit of the existing microscopes with a three axes laser interferometer system for improved relative sample positioning. Included in the same project were a hardware change towards faster scan positioning and data acquisition electronics as well as a new software concept allowing for remote control of the microscopes. We also present the use of non-negative matrix factorization to analyze spectromicroscopic data sets. Since in many specimens of interest in biology or related fields a number of spectral signatures may be unknown, thickness maps of the chemical composition of a sample cannot be calculated directly. A previous method used principal component analysis to orthogonalize and noise filter spectromicroscopy data, followed by cluster analysis as a form of unsupervised pattern recognition to determine pixels with spectroscopic similarity. We tried a non-negative matrix factorization algorithm to find a parts-based representation of the same data. The non-negativity constraint allows for a physical interpretation of component spectra and thickness maps. The STXM technique was utilized to investigate the composition of human sperm samples. We describe why the analysis of human sperm via x-ray spectromicroscopy can provide valuable information and what

  15. Automated Classification of Usual Interstitial Pneumonia using Regional Volumetric Texture Analysis in High-Resolution CT

    PubMed Central

    Depeursinge, Adrien; Chin, Anne S.; Leung, Ann N.; Terrone, Donato; Bristow, Michael; Rosen, Glenn; Rubin, Daniel L.

    2014-01-01

    Objectives We propose a novel computational approach for the automated classification of classic versus atypical usual interstitial pneumonia (UIP). Materials and Methods 33 patients with UIP were enrolled in this study. They were classified as classic versus atypical UIP by a consensus of two thoracic radiologists with more than 15 years of experience using the American Thoracic Society evidence–based guidelines for CT diagnosis of UIP. Two cardiothoracic fellows with one year of subspecialty training provided independent readings. The system is based on regional characterization of the morphological tissue properties of lung using volumetric texture analysis of multiple detector CT images. A simple digital atlas with 36 lung subregions is used to locate texture properties, from which the responses of multi-directional Riesz wavelets are obtained. Machine learning is used to aggregate and to map the regional texture attributes to a simple score that can be used to stratify patients with UIP into classic and atypical subtypes. Results We compared the predictions based on regional volumetric texture analysis with the ground truth established by expert consensus. The area under the receiver operating characteristic curve of the proposed score was estimated to be 0.81 using a leave-one-patient-out cross-validation, with high specificity for classic UIP. The performance of our automated method was found to be similar to that of the two fellows and to the agreement between experienced chest radiologists reported in the literature. However, the errors of our method and the fellows occurred on different cases, which suggests that combining human and computerized evaluations may be synergistic. Conclusions Our results are encouraging and suggest that an automated system may be useful in routine clinical practice as a diagnostic aid for identifying patients with complex lung disease such as classic UIP, obviating the need for invasive surgical lung biopsy and its

  16. Segmenting the papillary muscles and the trabeculae from high resolution cardiac CT through restoration of topological handles.

    PubMed

    Gao, Mingchen; Chen, Chao; Zhang, Shaoting; Qian, Zhen; Metaxas, Dimitris; Axel, Leon

    2013-01-01

    We introduce a novel algorithm for segmenting the high resolution CT images of the left ventricle (LV), particularly the papillary muscles and the trabeculae. High quality segmentations of these structures are necessary in order to better understand the anatomical function and geometrical properties of LV. These fine structures, however, are extremely challenging to capture due to their delicate and complex nature in both geometry and topology. Our algorithm computes the potential missing topological structures of a given initial segmentation. Using techniques from computational topology, e.g. persistent homology, our algorithm find topological handles which are likely to be the true signal. To further increase accuracy, these proposals are measured by the saliency and confidence from a trained classifier. Handles with high scores are restored in the final segmentation, leading to high quality segmentation results of the complex structures. PMID:24683968

  17. Characterization of a high-resolution hybrid DOI detector for a dedicated breast PET/CT scanner.

    PubMed

    Godinez, Felipe; Chaudhari, Abhijit J; Yang, Yongfeng; Farrell, Richard; Badawi, Ramsey D

    2012-06-01

    The aim of this study is to design and test a new high-resolution hybrid depth of interaction (DOI) detector for a dedicated breast PET/CT scanner. Two detectors have been designed and built. The completed detectors are based on a 14 × 14 array of 1.5 × 1.5 × 20 mm(3) unpolished lutetium orthosilicate scintillation crystals, with each element coated in a 50 μm layer of reflective material. The detector is read out from both ends using a position-sensitive photomultiplier tube (PSPMT) and a large active area (20 × 20 mm(2)) avalanche photodiode (APD) to enable acquisition of DOI information. Nuclear instrumentation modules were used to characterize the detectors' performances in terms of timing, intrinsic spatial resolution (ISR) and energy resolution, as well as DOI resolution with a dual-ended readout configuration. Measurements with the APD were performed at a temperature of 10 °C. All crystals were identified at all depths, even though the signal amplitude from the PSPMT decreases with depth away from it. We measured a timing resolution of 2.4 ns, and an average energy resolution of 19%. The mean ISR was measured to be 1.2 mm for crystals in the central row of the array for detectors in the face-to-face position. Two off-center positions were measured corresponding to 26° and 51° oblique photon incidence, and the mean ISR at these positions was 1.5 and 1.7 mm, respectively. The average DOI resolution across all crystals and depths was measured to be 2.9 mm (including the beam width of 0.6 mm). This detector design shows good promise as a high-resolution detector for a dedicated breast PET/CT scanner. PMID:22581109

  18. High-resolution imaging by scanning electron microscopy of semithin sections in correlation with light microscopy.

    PubMed

    Koga, Daisuke; Kusumi, Satoshi; Shodo, Ryusuke; Dan, Yukari; Ushiki, Tatsuo

    2015-12-01

    In this study, we introduce scanning electron microscopy (SEM) of semithin resin sections. In this technique, semithin sections were adhered on glass slides, stained with both uranyl acetate and lead citrate, and observed with a backscattered electron detector at a low accelerating voltage. As the specimens are stained in the same manner as conventional transmission electron microscopy (TEM), the contrast of SEM images of semithin sections was similar to TEM images of ultrathin sections. Using this technique, wide areas of semithin sections were also observed by SEM, without the obstruction of grids, which was inevitable for traditional TEM. This study also applied semithin section SEM to correlative light and electron microscopy. Correlative immunofluorescence microscopy and immune-SEM were performed in semithin sections of LR white resin-embedded specimens using a FluoroNanogold-labeled secondary antibody. Because LR white resin is hydrophilic and electron stable, this resin is suitable for immunostaining and SEM observation. Using correlative microscopy, the precise localization of the primary antibody was demonstrated by fluorescence microscopy and SEM. This method has great potential for studies examining the precise localization of molecules, including Golgi- and ER-associated proteins, in correlation with LM and SEM. PMID:26206941

  19. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale

    PubMed Central

    Zackrisson, Martin; Hallin, Johan; Ottosson, Lars-Göran; Dahl, Peter; Fernandez-Parada, Esteban; Ländström, Erik; Fernandez-Ricaud, Luciano; Kaferle, Petra; Skyman, Andreas; Stenberg, Simon; Omholt, Stig; Petrovič, Uroš; Warringer, Jonas; Blomberg, Anders

    2016-01-01

    The capacity to map traits over large cohorts of individuals—phenomics—lags far behind the explosive development in genomics. For microbes, the estimation of growth is the key phenotype because of its link to fitness. We introduce an automated microbial phenomics framework that delivers accurate, precise, and highly resolved growth phenotypes at an unprecedented scale. Advancements were achieved through the introduction of transmissive scanning hardware and software technology, frequent acquisition of exact colony population size measurements, extraction of population growth rates from growth curves, and removal of spatial bias by reference-surface normalization. Our prototype arrangement automatically records and analyzes close to 100,000 growth curves in parallel. We demonstrate the power of the approach by extending and nuancing the known salt-defense biology in baker’s yeast. The introduced framework represents a major advance in microbial phenomics by providing high-quality data for extensive cohorts of individuals and generating well-populated and standardized phenomics databases PMID:27371952

  20. I-IMAS: A 1.5D sensor for high-resolution scanning

    NASA Astrophysics Data System (ADS)

    Fant, A.; Gasiorek, P.; Turchetta, R.; Avset, B.; Bergamaschi, A.; Cavouras, D.; Evangelou, I.; French, M. J.; Galbiati, A.; Georgiou, H.; Hall, G.; Iles, G.; Jones, J.; Longo, R.; Manthos, N.; Metaxas, M. G.; Noy, M.; Ostby, J. M.; Psomadellis, F.; Royle, G. J.; Schulerud, H.; Speller, R. D.; van der Stelt, P. F.; Theodoridis, S.; Triantis, F.; Venanzi, C.

    2007-04-01

    We have developed a 1.5 D CMOS active pixel sensor to be used in conjunction with a scintillator for X-ray imaging. Within the Intelligent Imaging Sensors (I-ImaS) project, multiple sensors will be aligned to form a line-scanning system and its performance evaluated with respect to existing sensors in other digital radiography systems. Each sensor contains a 512×32 array of pixels and the electronics to convert the collected amount of charge to a digital output value. These include programmable gain amplifiers (PGAs) and analogue-to-digital converters (ADCs). The gain of the PGA can be switched between one or two, to increase the sensitivity for smaller collected charge; the ADC is a 14-bit successive approximation with a sampling rate of 1.25 MHz. The ASIC includes a programmable column fixed pattern noise mitigation circuit and a digitally controllable pixel reset mode block. Here we will describe the sensor design and the expected performance.

  1. Extended depth of field for high-resolution scanning transmission electron microscopy.

    PubMed

    Hovden, Robert; Xin, Huolin L; Muller, David A

    2011-02-01

    Aberration-corrected scanning transmission electron microscopes (STEMs) provide sub-Angstrom lateral resolution; however, the large convergence angle greatly reduces the depth of field. For microscopes with a small depth of field, information outside of the focal plane quickly becomes blurred and less defined. It may not be possible to image some samples entirely in focus. Extended depth-of-field techniques, however, allow a single image, with all areas in focus, to be extracted from a series of images focused at a range of depths. In recent years, a variety of algorithmic approaches have been employed for bright-field optical microscopy. Here, we demonstrate that some established optical microscopy methods can also be applied to extend the ∼ 6 nm depth of focus of a 100 kV 5th-order aberration-corrected STEM (α max = 33 mrad) to image Pt-Co nanoparticles on a thick vulcanized carbon support. These techniques allow us to automatically obtain a single image with all the particles in focus as well as a complimentary topography map. PMID:21122192

  2. High-Resolution Electrochemical Scanning Tunneling Microscopy (EC-STM) Flow-Cell Studies.

    PubMed

    Lay, Marcus D; Sorenson, Thomas A; Stickney, John L

    2003-09-25

    Atomic-level studies involving an electrochemical scanning tunneling microscope (EC-STM) flow-cell are presented. Multiple electrochemical atomic layer epitaxy (EC-ALE) cycles of CdTe formation were observed. For a binary compound (i.e., CdTe), an EC-ALE cycle involves exposure of the substrate to a solution of the first precursor (CdSO4), followed by exposure to the second precursor (TeO2), while maintaining potential control. Interleaving blank rinses may also be used, but were omitted in the present studies. To allow the exchange of solutions, the EC-STM cell was modified to allow solution exchange via a single peristaltic pump. A selection valve was used to choose the solution to be introduced into the cell. There is evidence that the growth of the initial layer of CdTe on Au(111), the (√7 × √7)-CdTe monolayer, can be improved in homogeneity and morphology by repeatedly depositing and stripping the Cd atomic layer. Therefore, a new starting cycle, which should improve the quality of deposits formed via EC-ALE, has been developed. PMID:26317446

  3. High-Resolution Adaptive Optics Scanning Laser Ophthalmoscope with Dual Deformable Mirrors

    SciTech Connect

    Chen, D C; Jones, S M; Silva, D A; Olivier, S S

    2006-08-11

    Adaptive optics scanning laser ophthalmoscope (AO SLO) has demonstrated superior optical quality of non-invasive view of the living retina, but with limited capability of aberration compensation. In this paper, we demonstrate that the use of dual deformable mirrors can effectively compensate large aberrations in the human retina. We used a bimorph mirror to correct large-stroke, low-order aberrations and a MEMS mirror to correct low-stroke, high-order aberration. The measured ocular RMS wavefront error of a test subject was 240 nm without AO compensation. We were able to reduce the RMS wavefront error to 90 nm in clinical settings using one deformable mirror for the phase compensation and further reduced the wavefront error to 48 nm using two deformable mirrors. Compared with that of a single-deformable-mirror SLO system, dual AO SLO offers much improved dynamic range and better correction of the wavefront aberrations. The use of large-stroke deformable mirrors provided the system with the capability of axial sectioning different layers of the retina. We have achieved diffraction-limited in-vivo retinal images of targeted retinal layers such as photoreceptor layer, blood vessel layer and nerve fiber layers with the combined phase compensation of the two deformable mirrors in the AO SLO.

  4. Extended Depth of Field for High-Resolution Scanning Transmission Electron Microscopy

    SciTech Connect

    Hovden, Robert; Xin, Huolin L.; Muller, David A.

    2010-12-02

    Aberration-corrected scanning transmission electron microscopes (STEMs) provide sub-Angstrom lateral resolution; however, the large convergence angle greatly reduces the depth of field. For microscopes with a small depth of field, information outside of the focal plane quickly becomes blurred and less defined. It may not be possible to image some samples entirely in focus. Extended depth-of-field techniques, however, allow a single image, with all areas in focus, to be extracted from a series of images focused at a range of depths. In recent years, a variety of algorithmic approaches have been employed for bright-field optical microscopy. Here, we demonstrate that some established optical microscopy methods can also be applied to extend the ~6 nm depth of focus of a 100 kV 5th-order aberration-corrected STEM (α{sub max} = 33 mrad) to image Pt-Co nanoparticles on a thick vulcanized carbon support. These techniques allow us to automatically obtain a single image with all the particles in focus as well as a complimentary topography map.

  5. Acquisition of a High Resolution Field Emission Scanning Electron Microscope for the Analysis of Returned Samples

    NASA Technical Reports Server (NTRS)

    Nittler, Larry R.

    2003-01-01

    This grant furnished funds to purchase a state-of-the-art scanning electron microscope (SEM) to support our analytical facilities for extraterrestrial samples. After evaluating several instruments, we purchased a JEOL 6500F thermal field emission SEM with the following analytical accessories: EDAX energy-dispersive x-ray analysis system with fully automated control of instrument and sample stage; EDAX LEXS wavelength-dispersive x-ray spectrometer for high sensitivity light-element analysis; EDAX/TSL electron backscatter diffraction (EBSD) system with software for phase identification and crystal orientation mapping; Robinson backscatter electron detector; and an in situ micro-manipulator (Kleindiek). The total price was $550,000 (with $150,000 of the purchase supported by Carnegie institution matching funds). The microscope was delivered in October 2002, and most of the analytical accessories were installed by January 2003. With the exception of the wavelength spectrometer (which has been undergoing design changes) everything is working well and the SEM is in routine use in our laboratory.

  6. High resolution, high frequency, close-range laser scanning to monitor bedrock erosion after mountain river dam removal

    NASA Astrophysics Data System (ADS)

    Cook, K. L.; Stark, C. P.

    2011-12-01

    The Chijiawan river, located in the Hsuehshan Range in central Taiwan, is a steep, coarse-grained, mixed bedrock-alluvial channel subject to heavy monsoonal rainfall, occasional typhoons and frequent floods. In May 2011, a 15m-high check dam holding back around 200,000m3 of sediment was removed. To monitor subsequent channel response, an array of instruments were deployed prior to dam removal. Given the anticipated magnitude of sediment transport and excellent empirical constraints, the Chijiawan channel is an ideal location to study fluvial incision processes into bedrock. There is abundant bedrock exposed in the river bed downstream of the dam, and we are interested in how the pulse of sediment following dam removal will impact bedrock erosion rates. We monitor erosion using repeat high resolution laser scanning at 8 sites spread along a 3 km long reach, 2 sites upstream of the dam and 6 downstream. We scan two sites with a Konica Minolta Vivid 910 scanner (with an accuracy of 1.4mm), and the remaining sites with a Faro Photon 120 scanner (with an accuracy of 2mm). Scanning at ranges of ~1m (Vivid) to ~10m (Faro), we obtain resolutions of 1 to 3mm. Based on the system developed by Wilson and Hovius (2010), reference frames for repeat surveys consist of permanent stainless steel sockets installed in 14 cm deep holes drilled into the bedrock, combined with removable targets that screw into the sockets for scanning. Vivid data are processed and 3D models are constructed using Rapidform 2004 software. Faro data is processed using Faro's Scene software. In order to compare the high resolution scanning with more traditional low-tech monitoring methods, we have also installed two sets of concrete expansion bolts. We obtain profiles between bolts with both a contour gauge and the scanners. The high accuracy and resolution of these scanners, and the system of precise benchmarks enable us to detect extremely small amounts of erosion. By repeat scanning after individual

  7. Understanding the structure of nanocatalysts with high resolution scanning/transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Francis, L. D.; Rivas, J.; José-Yacamán, M.

    2014-03-01

    Nanomaterials including nanoparticles, nanowires and nanotubes play an important role in heterogeneous catalysis. Thanks to the rapid improvement of the electron microscopic techniques and with the advent of aberration corrected electron microscopy as well as theoretical methodologies, the potential effects induced by nanocatalysts are better understood than before by unravelling their atomic structure. A brief introduction to advanced electron microscopic techniques namely aberration corrected scanning transmission electron microscopy (Cs-STEM) is presented and subsequently two examples of nanocatalysts are considered in the present review. The first example will focus on the study of bimetallic/core-shell nanoalloys. In heterogeneous catalysis, catalysts containing two or more metals might show significantly different catalytic properties compared to the parent metals and thus are widely utilized in several catalytic reactions. Atom-by-atom insights of the nanoalloy based catalysts ex: Au-Pd will be described in the present review using a combination of advanced electron microscopic and spectroscopic techniques. A related example on the understanding of bimetallic clusters by HAADF-STEM will also be presented in addition to nanoparticles. In the second case understanding the structure of transition metal chalcogenide based nanocatalysts by HRTEM and aberration corrected STEM, for the case of MoS2 will be discussed. MoS2-based catalysts serve as model catalysts and are employed in the hydrodesulphurisations (HDS) reactions in the removal of sulphur from gasoline and related petrochemical products. They have been studied in various forms including nanowires, nanotubes and nanoplates. Their structure, atomic insights and as a consequence elucidation of their corresponding catalytic activity are thus important.

  8. Comparison of high resolution terrestrial laser scanning and terrestrial photogrammetry for modeling applications

    NASA Astrophysics Data System (ADS)

    Özdemir, Samed; Bayrak, Temel

    2016-04-01

    3D documentation of cultural heritage and engineering projects is an important matter. These documentation applications, requires highest possible accuracy and detail to represent the actual surface correctly. Terrestrial photogrammetric method which is employed to produce 3D models to day, now can obtain dense point clouds thanks to advancements in computer technology. Terrestrial laser scanners gained popularity in the last decade because of their high capacity and today they are being widely used in many applications. However every application has its own requirements that depend on the type of application, modeling environment, accuracy and budget limitations. This means, for every application highest accuracy instruments are not always best, considering the facts that mentioned before. In this study, laser scanner and terrestrial photogrammetric methods' spatial and model accuracies investigated under various conditions which include measuring targets at different instrument to object distances then investigating the accuracy of these measurements, modeling an irregular shaped surface to compare two surfaces volume and surface areas, at last comparing dimensions of known geometrical shaped small objects. Also terrestrial laser scanners and terrestrial photogrammetric methods most suitable application conditions investigated in terms of cost, time, mobility and accuracy. Terrestrial laser scanner has the ability to, measure distances under cm accuracy and directly measuring 3D world but there is also some drawbacks like sensitive, bulky and expensive equipment. When it comes to terrestrial photogrammetry, it has above cm accuracy, comparatively fast (considering the image acquisition stage), inexpensive but it can be affected by the coarse geometry, surface texture and the environmental lighting. Key Words: Accuracy, Comparison, Model, Terrestrial Photogrammetry, Terrestrial Laser Scanning,.

  9. Review: two-photon scanning systems for clinical high resolution in vivo tissue imaging

    NASA Astrophysics Data System (ADS)

    König, K.; Müller, J.; Höfer, M.; Müller, C.; Weinigel, M.; Bückle, R.; Elsner, P.; Kaatz, M.; Messerschmidt, B.

    2008-02-01

    The femtosecond laser multiphoton tomograph DermaInspect as well as high NA two-photon GRIN microendoscopes for in vivo tomography of human skin have been used to detect malignant melanoma as well as to study the diffusion and intradermal accumulation of topically applied cosmetical and pharmaceutical components. So far, more than 500 patients and volunteers in Europe, Australia, and Asia have been investigated with this unique tomograph. Near infrared 80 MHz picojoule femtosecond laser pulses were employed to excite endogenous fluorophores such as NAD(P)H, flavoproteins, melanin, and elastin as well as fluorescent components of a variety of ointments via a twophoton excitation process. In addition, collagen has been imaged by second harmonic generation. Using a two-PMT detection system, the ratio of elastin to collagen was determined during optical sectioning. A high submicron spatial resolution and 50 picosecond temporal resolution was achieved using galvoscan mirrors and piezodriven focusing optics as well as a time-correlated single photon counting module with a fast microchannel plate detector and fast photomultipliers. Individual intratissue cells, mitochondria, melanosomes, and the morphology of the nuclei as well as extracellular matrix elements could be clearly visualized due to molecular imaging and the calculation of fluorescence lifetime images. Nanoparticles and intratissue drugs have been detected non-invasively, in situ and over a period of up to 3 months. In addition, hydration effects and UV effects were studied by monitoring modifications of cellular morphology and autofluorescence. The system was used to observe the diffusion through the stratum corneum and the accumulation and release of functionalized nanoparticles along hair shafts and epidermal ridges. The DermaInspect been also employed to gain information on skin age and wound healing in patients with ulcers. Novel developments include a galvo/piezo-scan driven flexible articulated arm as

  10. Modeling river bed morphology, roughness, and surface sedimentology using high resolution terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Brasington, J.; Vericat, D.; Rychkov, I.

    2012-11-01

    Recent advances in technology have revolutionized the acquisition of topographic data, offering new perspectives on the structure and morphology of the Earth's surface. These developments have had a profound impact on the practice of river science, creating a step change in the dimensionality, resolution, and precision of fluvial terrain models. The emergence of "hyperscale" survey methods, including structure from motion photogrammetry and terrestrial laser scanning (TLS), now presents the opportunity to acquire 3-D point cloud data that capture grain-scale detail over reach-scale extents. Translating these data into geomorphologically relevant products is, however, not straightforward. Unlike traditional survey methods, TLS acquires observations rapidly and automatically, but unselectively. This results in considerable "noise" associated with backscatter from vegetation and other artifacts. Moreover, the large data volumes are difficult to visualize; require very high capacity storage; and are not incorporated readily into GIS and simulation models. In this paper we analyze the geomorphological integrity of multiscale terrain models rendered from a TLS survey of the braided River Feshie, Scotland. These raster terrain models are generated using a new, computationally efficient geospatial toolkit: the topographic point cloud analysis toolkit (ToPCAT). This performs an intelligent decimation of point cloud data into a set of 2.5-D terrain models that retain information on the high-frequency subgrid topography, as the moments of the locally detrended elevation distribution. The results quantify the degree of terrain generalization inherent in conventional fluvial DEMs and illustrate how subgrid topographic statistics can be used to map the spatial pattern of particle size, grain roughness, and sedimentary facies at the reach scale.

  11. Doctors Should Bone Up on CT Scan Cancer Risks

    MedlinePlus

    ... fullstory_159909.html Doctors Should Bone Up on CT Scan Cancer Risks Many not aware of exact radiation ... July 15, 2016 (HealthDay News) -- Doctors routinely order CT scans as diagnostic tools. But many are ill-informed ...

  12. Terrestrial laser scanning for high resolution cyclostratigraphy of chert in pelagic limestone series

    NASA Astrophysics Data System (ADS)

    Penasa, L.; Franceschi, M.; Preto, N.

    2012-04-01

    We here propose the use of terrestrial laser scanning (TLS) for the mapping of chert on natural outcrops and for rapid extraction of its distribution along stratigraphic sections. The technique permits rapid production of high-definition time series for cyclostratigraphic analysis. Chert, sometimes referred to as flint, is a widespread component of sedimentary successions. It is often found in deep water and pelagic sediments and is constituted by cryptocrystalline varieties of quartz. It is generally accepted that the origin of chert is principally biogenic; it derives from the slow alteration, through a process called maturation, of opaline organic components as tests and spicules under the influence of pore waters. Most often, chert forms nodules of various size, or more or less continuous layers. Its color shows strong variability (white, red, gray, black). Although it could record paleoceanographic and climatic changes because of its biogenic nature, the cyclostratigraphic study of chert is largely neglected. This is mainly due to the difficulty of logging it. Hand logging is time consuming, but also, because of nodules' highly variable shape, lateral variability of chert abundance is large. Photographic image-processing techniques could help in principle, but they become difficult to use when chert has a color similar to that of the host rock. Chert is easily detectable in TLS generated images because of its very low reflectivity at infrared (IR) wavelengths, also where the color of chert in visible light is close to that of the host rock. Thus, TLS data can be used to map the distribution of chert on an outcrop, and to compute its abundance along a stratigraphic section. The ultimate result of such data processing, for which a suite of original procedures was implemented, is a stratigraphic log that is suitable for time series analysis. A section in the early Cretaceous Maiolica Formation of Central Italy (Gubbio) was considered as preliminary case study for

  13. High-Resolution Imaging of Polyethylene Glycol Coated Dendrimers via Combined Atomic Force and Scanning Tunneling Microscopy

    PubMed Central

    Zhong, Qian; Yin, Nai-Ning; Karsai, Arpad; da Rocha, Sandro R. P.; Liu, Gang-yu

    2015-01-01

    Dendrimers have shown great promise as drug delivery vehicles in recent years because they can be synthesized with designed size and functionalities for optimal transportation, targeting, and biocompatibility. One of the most well-known termini used for biocompatibility is polyethylene glycol (PEG), whose performance is affected by its actual conformation. However, the conformation of individual PEG bound to soft materials such as dendrimers has not been directly observed. Using atomic force microscopy (AFM) and scanning tunneling microscopy (STM), this work characterizes the structure adopted by PEGylated dendrimers with the highest resolution reported to date. AFM imaging enables visualization of the individual dendrimers, as well as the differentiation and characterization of the dendrimer core and PEG shell. STM provides direct imaging of the PEG extensions with high-resolution. Collectively, this investigation provides important insight into the structure of coated dendrimers, which is crucial for the design and development of better drug delivery vehicles. PMID:25685559

  14. Low dose, low noise, and high resolution volume of interest (VOI) imaging in C-arm flat-detector CT

    NASA Astrophysics Data System (ADS)

    Kolditz, Daniel; Kyriakou, Yiannis; Kalender, Willi A.

    2010-04-01

    The high flexibility of C-arm flat-detector computed tomography (FDCT) is used in a volume of interest (VOI) imaging method to handle the challenges of increasing spatial resolution, reducing noise and saving dose. A low-dose overview scan of the object and a high-dose scan of an arbitrary VOI are combined. The first scan is adequate for orientation to select the VOI and the second scan assures high image quality in the VOI. The combination is based on a forward projection of the reconstructed overview volume and the measured VOI data in the raw data domain. Differences in the projection values are matched before a standard Feldkamp-type reconstruction is performed. In simulations, spatial resolution, noise and contrast detectability were evaluated. Measurements of an anthropomorphic phantom were used to validate the proposed method for realistic application. In Monte Carlo dose simulations the dose reduction potential was investigated. By combination of the two scans an image is generated which covers the whole object and provides the actual VOI at high image quality. Spatial resolution was increased whereas noise was decreased from outside to inside the VOI, e.g. for the simulations from 0.8 lp/mm to 3.0 lp/mm and from 39 HU to 18 HU, respectively. Simultaneously, the cumulative dose for this two-scan procedure was significantly reduced in comparison to a conventional high dose scan, e.g. for the performed simulations and measurements by about 95 %. The proposed VOI approach offers significant benefits with respect to high-resolution and low-contrast imaging of a VOI at reduced dose.

  15. Implementation of a new scanning method for high-resolution fluorescence tomography using thermo-sensitive fluorescent agents

    PubMed Central

    Nouizi, Farouk; Kwong, Tiffany C.; Cho, Jaedu; Lin, Yuting; Sampathkumaran, Uma; Gulsen, Gultekin

    2016-01-01

    Conventional fluorescence tomography provides images of the distribution of fluorescent agents within highly scattering media, but suffers from poor spatial resolution. Previously, we introduced a new method termed “temperature-modulated fluorescence tomography” (TM-FT) that generates fluorescence images with high spatial resolution. TM-FT first uses focused ultrasound to locate the distribution of temperature-sensitive fluorescence probes. Afterward, this a priori information is utilized to improve the performance of the inverse solver for conventional fluorescence tomography and reveal quantitatively accurate fluorophore concentration maps. However, the disadvantage of this novel method is the long data acquisition time as the ultrasound beam was scanned in a step-and-shoot mode. In this Letter, we present a new, fast scanning method that reduces the imaging time 40 fold. By continuously scanning the ultrasound beam over a 50 mm by 25 mm field-of-view, high-resolution fluorescence images are obtained in less than 29 min, which is critical for in vivo small animal imaging. PMID:26512501

  16. Implementation of a new scanning method for high-resolution fluorescence tomography using thermo-sensitive fluorescent agents.

    PubMed

    Nouizi, Farouk; Kwong, Tiffany C; Cho, Jaedu; Lin, Yuting; Sampathkumaran, Uma; Gulsen, Gultekin

    2015-11-01

    Conventional fluorescence tomography provides images of the distribution of fluorescent agents within highly scattering media, but suffers from poor spatial resolution. Previously, we introduced a new method termed "temperature-modulated fluorescence tomography" (TM-FT) that generates fluorescence images with high spatial resolution. TM-FT first uses focused ultrasound to locate the distribution of temperature-sensitive fluorescence probes. Afterward, this a priori information is utilized to improve the performance of the inverse solver for conventional fluorescence tomography and reveal quantitatively accurate fluorophore concentration maps. However, the disadvantage of this novel method is the long data acquisition time as the ultrasound beam was scanned in a step-and-shoot mode. In this Letter, we present a new, fast scanning method that reduces the imaging time 40 fold. By continuously scanning the ultrasound beam over a 50 mm by 25 mm field-of-view, high-resolution fluorescence images are obtained in less than 29 min, which is critical for in vivo small animal imaging. PMID:26512501

  17. Evaluation of gas chromatography - electron ionization - full scan high resolution Orbitrap mass spectrometry for pesticide residue analysis.

    PubMed

    Mol, Hans G J; Tienstra, Marc; Zomer, Paul

    2016-09-01

    Gas chromatography with electron ionization and full scan high resolution mass spectrometry with an Orbitrap mass analyzer (GC-EI-full scan Orbitrap HRMS) was evaluated for residue analysis. Pesticides in fruit and vegetables were taken as an example application. The relevant aspects for GC-MS based residue analysis, including the resolving power (15,000 to 120,000 FWHM at m/z 200), scan rate, dynamic range, selectivity, sensitivity, analyte identification, and utility of existing EI-libraries, are assessed and discussed in detail. The optimum acquisition conditions in full scan mode (m/z 50-500) were a resolving power of 60,000 and an automatic-gain-control target value of 3E6. These conditions provided (i) an optimum mass accuracy: within 2 ppm over a wide concentration range, with/without matrix, enabling the use of ±5 ppm mass extraction windows (ii) adequate scan speed: minimum 12 scans/peak, (iii) an intra-scan dynamic range sufficient to achieve LOD/LOQs ≤0.5 pg in fruit/vegetable matrices (corresponding to ≤0.5 μg kg(-1)) for most pesticides. EI-Orbitrap spectra were consistent over a very wide concentration range (5 orders) with good match values against NIST (EI-quadrupole) spectra. The applicability for quantitative residue analysis was verified by validation of 54 pesticides in three matrices (tomato, leek, orange) at 10 and 50 μg/kg. The method involved a QuEChERS-based extraction with a solvent switch into iso-octane, and 1 μL hot splitless injection into the GC-HRMS system. A recovery between 70 and 120% and a repeatability RSD <10% was obtained in most cases. Linearity was demonstrated for the range ≤5-250 μg kg(-1). The pesticides could be identified according to the applicable EU criteria for GC-HRMS (SANTE/11945/2015). GC-EI-full scan Orbitrap HRMS was found to be highly suited for quantitative pesticide residue analysis. The potential of qualitative screening to extend the scope makes it an attractive alternative to GC

  18. Vertical and Horizontal Corneal Epithelial Thickness Profile Using Ultra-High Resolution and Long Scan Depth Optical Coherence Tomography

    PubMed Central

    Jiang, Hong; Xu, Zhe; Perez, Victor; Wang, Jianhua

    2014-01-01

    Purpose To determine the vertical and horizontal thickness profiles of the corneal epithelium in vivo using ultra-long scan depth and ultra-high resolution spectral domain optical coherence tomography (SD-OCT). Methods A SD-OCT was developed with an axial resolution of ∼3.3 µm in tissue and an extended scan depth. Forty-two eyes of 21 subjects were imaged twice. The entire horizontal and vertical corneal epithelial thickness profiles were evaluated. The coefficient of repeatability (CoR) and intraclass correlation (ICC) of the tests and interobserver variability were analyzed. Results The full width of the horizontal epithelium was detected, whereas part of the superior epithelium was not shown for the covered super eyelid. The mean central epithelial corneal thickness was 52.0±3.2 µm for the first measurement and 52.3±3.4 µm for the second measurement (P>.05). In the central zone (0–3.0 mm), the paracentral zones (3.0–6.0 mm) and the peripheral zones (6.0–10.0 mm), the mean epithelial thickness ranged from 51 to 53 µm, 52 to 57 µm, and 58 to 72 µm, respectively. There was no difference between the two tests at both meridians and in the right and left eyes (P>.05). The ICCs of the two tests ranged from 0.70 to 0.97 and the CoRs ranged from 2.5 µm to 7.8 µm from the center to the periphery, corresponding to 5.6% to 10.6% (CoR%). The ICCs of the two observers ranged from 0.72 to 0.93 and the CoRs ranged from 4.5 µm to 10.4 µm from the center to the periphery, corresponding to 8.7% to 15.2% (CoR%). Conclusions This study demonstrated good repeatability of ultra-high resolution and long scan depth SD-OCT to evaluate the entire thickness profiles of the corneal epithelium. The epithelial thickness increases from the center toward the limbus. PMID:24844566

  19. Technical Note: Skin thickness measurements using high-resolution flat-panel cone-beam dedicated breast CT

    SciTech Connect

    Shi Linxi; Vedantham, Srinivasan; Karellas, Andrew; O'Connell, Avice M.

    2013-03-15

    Purpose: To determine the mean and range of location-averaged breast skin thickness using high-resolution dedicated breast CT for use in Monte Carlo-based estimation of normalized glandular dose coefficients. Methods: This study retrospectively analyzed image data from a clinical study investigating dedicated breast CT. An algorithm similar to that described by Huang et al.['The effect of skin thickness determined using breast CT on mammographic dosimetry,' Med. Phys. 35(4), 1199-1206 (2008)] was used to determine the skin thickness in 137 dedicated breast CT volumes from 136 women. The location-averaged mean breast skin thickness for each breast was estimated and the study population mean and range were determined. Pathology results were available for 132 women, and were used to investigate if the distribution of location-averaged mean breast skin thickness varied with pathology. The effect of surface fitting to account for breast curvature was also studied. Results: The study mean ({+-} interbreast SD) for breast skin thickness was 1.44 {+-} 0.25 mm (range: 0.87-2.34 mm), which was in excellent agreement with Huang et al. Based on pathology, pair-wise statistical analysis (Mann-Whitney test) indicated that at the 0.05 significance level, there were no significant difference in the location-averaged mean breast skin thickness distributions between the groups: benign vs malignant (p= 0.223), benign vs hyperplasia (p= 0.651), hyperplasia vs malignant (p= 0.229), and malignant vs nonmalignant (p= 0.172). Conclusions: Considering this study used a different clinical prototype system, and the study participants were from a different geographical location, the observed agreement between the two studies suggests that the choice of 1.45 mm thick skin layer comprising the epidermis and the dermis for breast dosimetry is appropriate. While some benign and malignant conditions could cause skin thickening, in this study cohort the location-averaged mean breast skin thickness

  20. High-resolution secondary reconstructions with the use of flat panel CT in the clinical assessment of patients with cochlear implants.

    PubMed

    Pearl, M S; Roy, A; Limb, C J

    2014-06-01

    Radiologic assessment of cochlear implants can be limited because of metallic streak artifacts and the high attenuation of the temporal bones. We report on 14 patients with 18 cochlear implants (17 Med-El standard 31.5-mm arrays, 1 Med-El medium 24-mm array) who underwent flat panel CT with the use of high-resolution secondary reconstruction techniques. Flat panel CT depicted the insertion site, cochlear implant course, and all 216 individual electrode contacts. The calculated mean angular insertion depth for standard arrays was 591.9° (SD = 70.9; range, 280°). High-resolution secondary reconstructions of the initial flat panel CT dataset, by use of a manually generated field of view, Hounsfield unit kernel type, and sharp image characteristics, provided high-quality images with improved spatial resolution. Flat panel CT is a promising imaging tool for the postoperative evaluation of cochlear implant placement. PMID:24371026

  1. HIGH RESOLUTION AND FAST SCANNING SQUID BASED NON-DESTRUCTIVE INSPECTION SYSTEM OF NIOBIUM SHEETS FOR SRF CAVITIES

    SciTech Connect

    SHU, QUAN-SHENG

    2008-06-08

    Applications in high energy physics accelerators and other fields require the use of thousands of superconducting RF (SRF) cavities that are made of high purity Nb material and the purity of niobium is critical for these cavities to reach the highest accelerating fields. Tantalum is the most prolific of metal inclusions, which can cause thermal breakdown and prevent the cavities from reaching their theoretical performance limits of 45-50 MV/m, and DOE Labs are searching for a technology that could detect small impurities in superconducting Nb sheets reaching the highest possible accelerating fields. The proposed innovative SQUID-based Nondestructive system can scan Niobium sheets used in the manufacturing of SRF cavities with both high speed and high resolution. A highly sensitive SQUID system with a gradiometer probe, non-magnetic dewar, data acquisition system, and a scanning system will be developed for fast detection of impurities in planar Nb sheets. In phase I, we will modify our existing SQUID-based eddy current system to detect 100 micron size Ta defects and a great effort will focus on achieving fast scanning of a large number of niobium sheets in a shorter time and with reasonable resolution. An older system operated by moving the sample 1 mm, stopping and waiting for 1-2 seconds, then activating a measurement by the SQUID after the short settle time is modified. A preliminary designed and implemented a SQUID scanning system that is fast and is capable of scanning a 30 cm x 30 cm Nb sheet in 15 minutes by continuously moving the table at speeds up to 10 mm/s while activating the SQUID at 1mm interval is modified and reached the Phase I goal of 100mm resolution. We have successfully demonstrated the feasibility that a fast speed SQUID scanner without sacrificing the resolution of detection can be done, and a data acquisition and analysis system is also preliminary developed. The SQUID based scanner will help reach the highest accelerating field in SRF

  2. Exploring miniature insect brains using micro-CT scanning techniques.

    PubMed

    Smith, Dylan B; Bernhardt, Galina; Raine, Nigel E; Abel, Richard L; Sykes, Dan; Ahmed, Farah; Pedroso, Inti; Gill, Richard J

    2016-01-01

    The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures. PMID:26908205

  3. Exploring miniature insect brains using micro-CT scanning techniques

    PubMed Central

    Smith, Dylan B.; Bernhardt, Galina; Raine, Nigel E.; Abel, Richard L.; Sykes, Dan; Ahmed, Farah; Pedroso, Inti; Gill, Richard J.

    2016-01-01

    The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures. PMID:26908205

  4. 3D Assessment of Cortical Bone Porosity and Tissue Mineral Density Using High-Resolution Micro-CT: Effects of Resolution and Threshold Method

    PubMed Central

    Palacio-Mancheno, Paolo E.; Larriera, Adriana I.; Doty, Stephen B.; Cardoso, Luis; Fritton, Susannah P.

    2013-01-01

    Current micro-CT systems allow scanning bone at resolutions capable of three-dimensional characterization of intracortical vascular porosity and osteocyte lacunae. However, the scanning and reconstruction parameters along with the image segmentation method affect the accuracy of the measurements. In this study, the effects of scanning resolution and image threshold method in quantifying small features of cortical bone (vascular porosity, vascular canal diameter and separation, lacunar porosity and density, and tissue mineral density) were analyzed. Cortical bone from the tibia of Sprague-Dawley rats was scanned at 1-µm and 4-µm resolutions, reconstructions were density-calibrated, and volumes of interest were segmented using approaches based on edge-detection or histogram analysis. With 1-µm resolution scans, the osteocyte lacunar spaces could be visualized, and it was possible to separate the lacunar porosity from the vascular porosity. At 4-µm resolution, the vascular porosity and vascular canal diameter were underestimated, and osteocyte lacunae were not effectively detected, whereas the vascular canal separation and tissue mineral density were overestimated compared to 1-µm resolution. Resolution had a much greater effect on the measurements than did threshold method, with partial volume effects at resolutions coarser than 2 µm demonstrated in two separate analyses, one of which assessed the effect of resolution on an object of known size with similar architecture to a vascular pore. Although there was little difference when using the edge-detection versus histogram-based threshold approaches, edge-detection was somewhat more effective in delineating canal architecture at finer resolutions (1 – 2 µm). In addition, use of a high-resolution (1-µm) density-based threshold on lower resolution (4-µm) density-calibrated images was not effective in improving the lower-resolution measurements. In conclusion, if measuring cortical vascular microarchitecture

  5. Using a geographic information system and scanning technology to create high-resolution land-use data sets

    USGS Publications Warehouse

    Harvey, Craig A.; Kolpin, Dana W.; Battaglin, William A.

    1996-01-01

    A geographic information system (GIS) procedure was developed to compile low-altitude aerial photography, digitized data, and land-use data from U.S. Department of Agriculture Consolidated Farm Service Agency (CFSA) offices into a high-resolution (approximately 5 meters) land-use GIS data set. The aerial photography consisted of 35-mm slides which were scanned into tagged information file format (TIFF) images. These TIFF images were then imported into the GIS where they were registered into a geographically referenced coordinate system. Boundaries between land use were delineated from these GIS data sets using on-screen digitizing techniques. Crop types were determined using information obtained from the U.S. Department of Agriculture CFSA offices. Crop information not supplied by the CFSA was attributed by manual classification procedures. Automated methods to provide delineation of the field boundaries and land-use classification were investigated. It was determined that using these data sources, automated methods were less efficient and accurate than manual methods of delineating field boundaries and classifying land use.

  6. Efficient cross-section preparation method for high-resolution imaging of hard polymer composites with a scanning electron microscope.

    PubMed

    Brodusch, N; Yourdkhani, M; Hubert, P; Gauvin, R

    2015-11-01

    Characterization of distribution and arrangement of filler particles in polymer composites is of primary importance to understand and maximize their mechanical, electrical and thermal properties. An innovative procedure that allows reliable and straightforward preparation of cross-sections of polymer composites with the use of mechanical polishing, ion beam etching and soft gaseous etching is presented in this paper. Because of the inherent difference between the organic amorphous matrix and the inorganic crystalline nature of composite fillers, the removal of matrix layers at the surface of the cross-section at the expense of the inorganic materials allowed characterizing the composite filler particles structure and distribution over the surface. Since beam broadening did not occur before the beam hit the nanoparticles, high-resolution imaging in the scanning electron microscope was possible and true dimensions and orientation of the particles were observed. This provided more flexibility in selecting the primary beam voltage; especially, the use of low beam energy greatly improved the image contrast and reduced charging effects resulting from the primary electron beam bombardment. It was shown that only polymers with a carbonated main chain could be etched selectively by the gaseous etching process. PMID:26098996

  7. Creation of High Resolution Terrain Models of Barringer Meteorite Crater (Meteor Crater) Using Photogrammetry and Terrestrial Laser Scanning Methods

    NASA Technical Reports Server (NTRS)

    Brown, Richard B.; Navard, Andrew R.; Holland, Donald E.; McKellip, Rodney D.; Brannon, David P.

    2010-01-01

    Barringer Meteorite Crater or Meteor Crater, AZ, has been a site of high interest for lunar and Mars analog crater and terrain studies since the early days of the Apollo-Saturn program. It continues to be a site of exceptional interest to lunar, Mars, and other planetary crater and impact analog studies because of its relatively young age (est. 50 thousand years) and well-preserved structure. High resolution (2 meter to 1 decimeter) digital terrain models of Meteor Crater in whole or in part were created at NASA Stennis Space Center to support several lunar surface analog modeling activities using photogrammetric and ground based laser scanning techniques. The dataset created by this activity provides new and highly accurate 3D models of the inside slope of the crater as well as the downslope rock distribution of the western ejecta field. The data are presented to the science community for possible use in furthering studies of Meteor Crater and impact craters in general as well as its current near term lunar exploration use in providing a beneficial test model for lunar surface analog modeling and surface operation studies.

  8. High-resolution Terrestrial Laser Scanning (TLS) on cushion peatlands - a case study from the Peruvian Andes

    NASA Astrophysics Data System (ADS)

    Forbriger, M.; Höfle, B.; Siart, C.; Schittek, K.; Bubenzer, O.

    2012-04-01

    So-called cushion peatlands located in the high mountain areas of the Peruvian Andes are unique ecotopes, which are of major importance for both palaeoenvironmental reconstructions and permanent water supply of the valley oases in the presently hyperarid Peruvian desert. In this context, a case study was performed on the Cerro Llamoca peatland (southern Peru, province Lucanas, 14° S) in the uppermost reaches of the Rió Grande catchment area (4000-4450 m a.s.l.) within the framework of the BMBF-funded project 'Andean Transect - Climate Sensitivity of pre-Columbian Man-Environment-Systems' and serves as a basis for a long-term, multitemporal observation study. As small-scale geomorphologic investigations require high-resolution elevation data, which is still not available for this remote study site, and local microrelief is characterised by features not visible from aerial view (e.g. channel cuttings within the peatland), terrestrial laser scanning (TLS) was applied. Data acquisition was carried out with one of the latest 'time-of-flight'-scanners (Riegl VZ-400). A total of 46 positions was recorded to capture the whole area of interest leading to more 370 million single laser points within an area of approximately 1,8 km2. Registration of scan positions was performed by means of GPS measurements, coarse registration and the iterative closest point (ICP) algorithm provided by the plugin Multi-Station Adjustment within the RiSCAN PRO software (Riegl). The large amount of output data required the use of special LiDAR software for further processing and digital elevation raster generation (OPALS software). The defined target raster resolution was set to values between 0.1 and 2 m depending on the average point density. It is important to have access to the original point cloud including additional laser point attributes (e.g. signal amplitude and echo width) for digital terrain model generation (i.e. terrain point filtering) and geomorphologic mapping by means of

  9. High-resolution CT by diffraction-enhanced x-ray imaging: mapping of breast tissue samples and comparison with their histo-pathology.

    PubMed

    Bravin, Alberto; Keyriläinen, Jani; Fernández, Manuel; Fiedler, Stefan; Nemoz, Christian; Karjalainen-Lindsberg, Marja-Liisa; Tenhunen, Mikko; Virkkunen, Pekka; Leidenius, Marjut; von Smitten, Karl; Sipilä, Petri; Suortti, Pekka

    2007-04-21

    The aim of this study was to introduce high-resolution computed tomography (CT) of breast tumours using the diffraction-enhanced x-ray imaging (DEI) technique and to compare results with radiological and histo-pathological examinations. X-ray CT images of tumour-bearing breast tissue samples were acquired by monochromatic synchrotron radiation (SR). Due to the narrow beam and a large sample-to-detector distance scattering is rejected in the absorption contrast images (SR-CT). Large contrast enhancement is achieved by the use of the DEI-CT method, where the effects of refraction and scatter rejection are analysed by crystal optics. Clinical mammograms and CT images were recorded as reference material for a radiological examination. Three malignant and benign samples were studied in detail. Their radiographs were compared with optical images of stained histological sections. The DEI-CT images map accurately the morphology of the samples, including collagen strands and micro-calcifications of dimensions less than 0.1 mm. Histo-pathological examination and reading of the radiographs were done independently, and the conclusions were in general agreement. High-resolution DEI-CT images show strong contrast and permit visualization of details invisible in clinical radiographs. The radiation dose may be reduced by an order of magnitude without compromising image quality, which would make possible clinical in vivo DEI-CT with future compact SR sources. PMID:17404464

  10. Multimodal imaging of the human temporal bone: A comparison of CT and optical scanning techniques

    NASA Astrophysics Data System (ADS)

    Voie, Arne H.; Whiting, Bruce; Skinner, Margaret; Neely, J. Gail; Lee, Kenneth; Holden, Tim; Brunsden, Barry

    2003-10-01

    A collaborative effort between Washington University in St. Louis and Spencer Technologies in Seattle, WA has been undertaken to create a multimodal 3D reconstruction of the human cochlea and vestibular system. The goal of this project is to improve the accuracy of in vivo CT reconstructions of implanted cochleae, and to expand the knowledge of high-resolution anatomical detail provided by orthogonal-plane optical sectioning (OPFOS). At WUSL, computed tomography (CT) images of the cochlea are used to determine the position of cochlear implant electrodes relative to target auditory neurons. The cochlear implant position is determined using pre- and post-operative CT scans. The CT volumes are cross-registered to align the semicircular canals and internal auditory canal, which have a unique configuration in 3-D space. The head of a human body donor was scanned with a clinical CT device, after which the temporal bones were removed, fixed in formalin and trimmed prior to scanning with a laboratory Micro CT scanner. Following CT, the temporal bones were sent to the OPFOS Imaging Lab at Spencer Technologies for a further analysis. 3-D reconstructions of CT and OPFOS imaging modalities were compared, and results are presented. [Work supported by NIDCD Grants R44-03623-5 and R01-00581-13.

  11. [Fundamental study of helical scanning CT--evaluation of spatial resolution in the longitudinal axis].

    PubMed

    Anno, H; Katada, K; Tsujioka, K; Ida, Y; Ohashi, I; Takeuchi, A; Koga, S

    1992-11-25

    We evaluated spatial resolution in the longitudinal axis with helical scanning CT using a fourth-generation fast CT scanner. We made a phantom by stringing acrylic balls (65 mm phi x 8 and 9 mm phi x 6). The acquired images were processed by MPR and assessed visually to evaluate axis resolution. With the conventional scanning method, the partial volume effect varied with the starting position, but helical scanning was able to reconstruct high-resolution images using continuous raw data. During helical scanning, axis resolution varied depending on the slice width and sliding speed of the couch top. Even if the sliding speed was kept constant at 4 mm/sec, axis resolution was superior with a slice width of 2 mm than with one of 5 mm. PMID:1465334

  12. Tomosynthesis using high speed CT scanning system

    SciTech Connect

    Boyd, D.P.; Rutt, B.K.

    1988-04-05

    In a high-speed CT scanning system in which fan beams of radiation are generated by sweeping an electron beam along a target and collimated X-rays emitted by the target are received by an array of detectors after passing through a patient area between the target and the array of detectors, a method of obtaining a tomograph of a patient is described comprising the steps of sweeping the electron beam along the target, measuring radiation received at detector positions as the electron beam is swept along the target; moving the patient past the collimated X-rays, and combining measurements at the detector positions as correlated in time to positions of the patient and tomosynthesizing the tomograph from data for lines in the desired plane for the positions of the patient.

  13. Real-time Data Processing and Visualization for the Airborne Scanning High-resolution Interferometer Sounder (S-HIS)

    NASA Astrophysics Data System (ADS)

    Taylor, J. K.; Revercomb, H. E.; Hoese, D.; Garcia, R. K.; Smith, W. L.; Weisz, E.; Tobin, D. C.; Best, F. A.; Knuteson, R. O.; Sullivan, D. V.; Barnes, C. M.; Van Gilst, D. P.

    2015-12-01

    The Hurricane and Severe Storm Sentinel (HS3) is a five-year NASA mission targeted to enhance the understanding of the formation and evolution of hurricanes in the Atlantic basin. Measurements were made from two NASA Global Hawk Unmanned Aircraft Systems (UAS) during the 2012 through 2014 hurricane seasons, with flights conducted from the NASA Wallops Flight Facility. The Global Hawk aircraft are capable of high altitude flights with durations of up to 30 hours, which allow extensive observations over distant storms, not typically possible with manned aircraft. The two NASA Global Hawks were equipped with instrument suites to study the storm environment, and inner core structure and processes, respectively. The Scanning High-resolution Interferometer Sounder (S-HIS), designed and built by the University of Wisconsin (UW) Space Science and Engineering Center (SSEC), measures emitted thermal radiation at high spectral resolution between 3.3 and 18 microns. The radiance measurements are used to obtain temperature and water vapor profiles of the Earth's atmosphere. The S-HIS spatial resolution is 2 km at nadir, across a 40 km ground swath from a nominal altitude of 20 kilometers. Since 1998, the S-HIS has participated in 33 field campaigns and has proven to be extremely dependable, effective, and highly accurate. It has flown on the NASA ER-2, DC-8, Proteus, WB-57, and Global Hawk airborne platforms. The UW S-HIS infrared sounder instrument is equipped with a real-time ground data processing system capable of delivering atmospheric profiles, radiance data, and engineering status to mission support scientists - all within less than one minute from the time of observation. This ground data processing system was assembled by a small team using existing software and proven practical techniques similar to a satellite ground system architecture. This summary outlines the design overview for the system and illustrates the data path, content, and outcomes.

  14. Multifrequency Ultra-High Resolution Miniature Scanning Microscope Using Microchannel And Solid-State Sensor Technologies And Method For Scanning Samples

    NASA Technical Reports Server (NTRS)

    Wang, Yu (Inventor)

    2006-01-01

    A miniature, ultra-high resolution, and color scanning microscope using microchannel and solid-state technology that does not require focus adjustment. One embodiment includes a source of collimated radiant energy for illuminating a sample, a plurality of narrow angle filters comprising a microchannel structure to permit the passage of only unscattered radiant energy through the microchannels with some portion of the radiant energy entering the microchannels from the sample, a solid-state sensor array attached to the microchannel structure, the microchannels being aligned with an element of the solid-state sensor array, that portion of the radiant energy entering the microchannels parallel to the microchannel walls travels to the sensor element generating an electrical signal from which an image is reconstructed by an external device, and a moving element for movement of the microchannel structure relative to the sample. Discloses a method for scanning samples whereby the sensor array elements trace parallel paths that are arbitrarily close to the parallel paths traced by other elements of the array.

  15. UT-CT: A National Resource for Applications of High-Resolution X-ray Computed Tomography in the Geological Sciences

    NASA Astrophysics Data System (ADS)

    Carlson, W. D.; Ketcham, R. A.; Rowe, T. B.

    2002-12-01

    An NSF-sponsored (EAR-IF) shared multi-user facility dedicated to research applications of high-resolution X-ray computed tomography (CT) in the geological sciences has been in operation since 1997 at the University of Texas at Austin. The centerpiece of the facility is an industrial CT scanner custom-designed for geological applications. Because the instrument can optimize trade-offs among penetrating ability, spatial resolution, density discrimination, imaging modes, and scan times, it can image a very broad range of geological specimens and materials, and thus offers significant advantages over medical scanners and desktop microtomographs. Two tungsten-target X-ray sources (200-kV microfocal and 420-kV) and three X-ray detectors (image-intensifier, high-sensitivity cadmium tungstate linear array, and high-resolution gadolinium-oxysulfide radiographic line scanner) can be used in various combinations to meet specific imaging goals. Further flexibility is provided by multiple imaging modes: second-generation (translate-rotate), third-generation (rotate-only; centered and variably offset), and cone-beam (volume CT). The instrument can accommodate specimens as small as about 1 mm on a side, and as large as 0.5 m in diameter and 1.5 m tall. Applications in petrology and structural geology include measuring crystal sizes and locations to identify mechanisms governing the kinetics of metamorphic reactions; visualizing relationships between alteration zones and abundant macrodiamonds in Siberian eclogites to elucidate metasomatic processes in the mantle; characterizing morphologies of spiral inclusion trails in garnet to test hypotheses of porphyroblast rotation during growth; measuring vesicle size distributions in basaltic flows for determination of elevation at the time of eruption to constrain timing and rates of continental uplift; analysis of the geometry, connectivity, and tortuosity of migmatite leucosomes to define the topology of melt flow paths, for numerical

  16. Influence of scan setting selections on root canal visibility with cone beam CT

    PubMed Central

    Hassan, BA; Payam, J; Juyanda, B; van der Stelt, P; Wesselink, PR

    2012-01-01

    Objectives The aim of this study was to assess the influence of scan setting selection, including field of view (FOV) ranging from small to large, number of projections and scan modes on the visibility of the root canal with cone beam CT (CBCT). Methods One human mandible cadaver was scanned with CBCT (Accuitomo 170; J Morita MPG Corp., Kyoto, Japan) using six different FOVs (4×4 cm, 6×6 cm, 8×8 cm, 10×10 cm, 14×10 cm and 17×12 cm) with either 360 or 180 projections in standard and high resolution. The right canine was selected for evaluation. Ten observers independently assessed the visibility of the canal space and overall image quality on a five-point scale. Results The results indicate that both selections of FOV and number of projections have significant influence on root canal visibility (p = 0.0001), whereas scan mode, whether standard or high resolution, was less relevant (p = 0.34). Conclusions The smallest FOV available should always be used for endodontic applications, and it is not recommended to reduce the number of projections to 180. Using the standard scan mode instead of high resolution does not negatively influence the visibility of the root canal space and is therefore recommended. PMID:23166361

  17. High-resolution room-temperature sample scanning superconducting quantum interference device microscope configurable for geological and biomagnetic applications

    SciTech Connect

    Fong, L.E.; Holzer, J.R.; McBride, K.K.; Lima, E.A.; Baudenbacher, F.; Radparvar, M.

    2005-05-15

    We have developed a scanning superconducting quantum interference device (SQUID) microscope system with interchangeable sensor configurations for imaging magnetic fields of room-temperature (RT) samples with submillimeter resolution. The low-critical-temperature (T{sub c}) niobium-based monolithic SQUID sensors are mounted on the tip of a sapphire and thermally anchored to the helium reservoir. A 25 {mu}m sapphire window separates the vacuum space from the RT sample. A positioning mechanism allows us to adjust the sample-to-sensor spacing from the top of the Dewar. We achieved a sensor-to-sample spacing of 100 {mu}m, which could be maintained for periods of up to four weeks. Different SQUID sensor designs are necessary to achieve the best combination of spatial resolution and field sensitivity for a given source configuration. For imaging thin sections of geological samples, we used a custom-designed monolithic low-T{sub c} niobium bare SQUID sensor, with an effective diameter of 80 {mu}m, and achieved a field sensitivity of 1.5 pT/Hz{sup 1/2} and a magnetic moment sensitivity of 5.4x10{sup -18} A m{sup 2}/Hz{sup 1/2} at a sensor-to-sample spacing of 100 {mu}m in the white noise region for frequencies above 100 Hz. Imaging action currents in cardiac tissue requires a higher field sensitivity, which can only be achieved by compromising spatial resolution. We developed a monolithic low-T{sub c} niobium multiloop SQUID sensor, with sensor sizes ranging from 250 {mu}m to 1 mm, and achieved sensitivities of 480-180 fT/Hz{sup 1/2} in the white noise region for frequencies above 100 Hz, respectively. For all sensor configurations, the spatial resolution was comparable to the effective diameter and limited by the sensor-to-sample spacing. Spatial registration allowed us to compare high-resolution images of magnetic fields associated with action currents and optical recordings of transmembrane potentials to study the bidomain nature of cardiac tissue or to match petrography

  18. Fibroproliferative changes on high-resolution CT in the acute respiratory distress syndrome predict mortality and ventilator dependency: a prospective observational cohort study

    PubMed Central

    Muranaka, Hiroyuki; Gushima, Yasuhiro; Kotani, Toru; Nader, Habashi M; Fujimoto, Kiminori; Johkoh, Takeshi; Iwamoto, Norihiro; Kawamura, Kodai; Nagano, Junji; Fukuda, Koichiro; Hirata, Naomi; Yoshinaga, Takeshi; Ichiyasu, Hidenori; Tsumura, Shinsuke; Kohrogi, Hirotsugu; Kawaguchi, Atsushi; Yoshioka, Masakazu; Sakuma, Tsutomu; Suga, Moritaka

    2012-01-01

    Objectives To examine whether the extent of fibroproliferative changes on high-resolution CT (HRCT) scan influences prognosis, ventilator dependency and the associated outcomes in patients with early acute respiratory distress syndrome (ARDS). Design A prospective observational cohort study. Setting Intensive care unit in a teaching hospital. Participants 85 patients with ARDS who met American-European Consensus Conference Criteria and eligible criteria. Interventions HRCT scans were performed and prospectively evaluated by two independent observers on the day of diagnosis and graded into six findings according to the extent of fibroproliferation. An overall HRCT score was obtained by previously published method. Primary and secondary outcomes The primary outcome was 60-day mortality. Secondary outcomes included the number of ventilator-free days, organ failure-free days, the incidence of barotraumas and the occurrence of ventilator-associated pneumonia. Results Higher HRCT scores were associated with statistically significant decreases in organ failure-free days as well as ventilator-free days. Multivariate Cox proportional hazards model showed that the HRCT score remained an independent risk factor for mortality (HR 1.20; 95% CI 1.06 to 1.36; p=0.005). Multivariate analysis also revealed that the CT score had predictive value for ventilator weaning within 28 days (OR 0.63; 95% CI 0.48 to 0.82; p=0.0006) as well as for an incidence of barotraumas (OR 1.61; 95% CI 1.08 to 2.38; p=0.018) and for an occurrence of ventilator-associated pneumonia (OR 1.46; 95% CI 1.13 to 1.89; p=0.004). A HRCT score <210 enabled prediction of 60-day survival with 71% sensitivity and 72% specificity and of ventilator-weaning within 28 days with 75% sensitivity and 76% specificity. Conclusions Pulmonary fibroproliferation assessed by HRCT in patients with early ARDS predicts increased mortality with an increased susceptibility to multiple organ failure, including ventilator

  19. Iodine-131 treatment and high-resolution CT: results in patients with lung metastases from differentiated thyroid carcinoma.

    PubMed

    Ilgan, Seyfettin; Karacalioglu, A Ozgur; Pabuscu, Yuksel; Atac, G Kaan; Arslan, Nuri; Ozturk, Emel; Gunalp, Bengul; Ozguven, M Ali

    2004-06-01

    Between 1984 and 2002, pulmonary metastases were detected in 42 (4%) out of 1,023 patients with differentiated thyroid carcinoma (DTC) in our department. The age at diagnosis ranged from 6 to 77 years. Lung metastases were diagnosed by both increased thyroglobulin (Tg) levels and positive uptake of iodine-131 on scans, and/or positive radiological findings. The primary tumours were histologically classified as papillary (30 patients), follicular (nine patients) and poorly differentiated (two tall cell, one insular carcinoma). The duration of follow-up ranged from 24 to 228 months. The end-results of the (131)I therapy were evaluated. The treatment of choice was (131)I therapy of metastases after total thyroidectomy plus lymph node dissection (if lymph node metastases were present). Applied single and total (131)I activities were 1.8-10.4 GBq and 5.5-43.7 GBq, respectively. Lung metastases were present at the time of diagnosis in 30 patients and developed during the follow-up period in the remaining 12. Twelve patients with extensive metastases died of thyroid carcinoma and another died due to secondary malignancy (malignant mesothelioma). Ten patients with lung metastases remain completely free of disease and are probably cured, while another seven were stable at the time of study. Three- and five-year survival rates were 86% (36/42) and 76% (32/42), respectively. To define the diagnostic value of high-resolution computed tomography (HRCT) and identify the distinctive features of lung metastases from DTC, 22 patients were further examined with HRCT within 2 weeks of the initial diagnosis of lung metastases and the results were compared with chest X-ray findings. HRCT detected metastases in 10 out of 14 patients with a normal chest X-ray and confirmed metastases in all patients with positive (n=5) and suspicious (n=3) chest X-ray. HRCT did not show any abnormalities in four patients with positive lung uptake on (131)I whole-body images. Stage of disease, existence

  20. High-Resolution Micro-CT for Morphologic and Quantitative Assessment of the Sinusoid in Human Cavernous Hemangioma of the Liver

    PubMed Central

    Duan, Jinghao; Hu, Chunhong; Chen, Hua

    2013-01-01

    Hepatic sinusoid plays a vital role in human cavernous hemangioma of the liver (CHL), and its morphologic investigation facilitates the understanding of microcirculation mechanism and pathological change of CHL. However, precise anatomical view of the hepatic sinusoid has been limited by the resolution and contrast available from existing imaging techniques. While liver biopsy has traditionally been the reliable method for the assessment of hepatic sinusoids, the invasiveness and sampling error are its inherent limitations. In this study, imaging of CHL samples was performed using in-line phase-contrast imaging (ILPCI) technique with synchrotron radiation. ILPCI allowed clear visualization of soft tissues and revealed structural details that were invisible to conventional radiography. Combining the computed tomography (CT) technique, ILPCI-CT was used to acquire the high-resolution micro-CT images of CHL, and three dimensional (3D) microstructures of hepatic sinusoids were provided for the morphologic depiction and quantitative assessment. Our study demonstrated that ILPCI-CT could substantially improve the radiographic contrast of CHL tissues in vitro with no contrast agent. ILPCI-CT yielded high-resolution micro-CT image of CHL sample at the micron scale, corresponding to information on actual structures revealed at histological section. The 3D visualization provided an excellent view of the hepatic sinusoid. The accurate view of individual hepatic sinusoid was achieved. The valuable morphological parameters of hepatic sinusoids, such as thrombi, diameters, surface areas and volumes, were measured. These parameters were of great importance in the evaluation of CHL, and they provided quantitative descriptors that characterized anatomical properties and pathological features of hepatic sinusoids. The results highlight the high degree of sensitivity of the ILPCI-CT technique and demonstrate the feasibility of accurate visualization of hepatic sinusoids. Moreover

  1. Temporal Variations in the Roughness of Eroding River Banks Revealed by High-Resolution Digital Photogrammetry and Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Darby, S. E.; Leyland, J.; Rinaldi, M.; Teruggi, L.; Ostuni, D.

    2010-12-01

    of the roughness is approximated as a series of user defined Gaussian functions, with the skin drag component characterised by the deviation of points from the fitted curves. In our study these bank ‘roughness profiles’ are extracted from an annual series (2003-present) of high-resolution DEMs of the river bank, the latter being constructed either through digital photogrammetry or terrestrial laser scanning surveys. The DEMs are used to quantify accurately the spatial trends and amounts of annual bank erosion observed in relation to the hydrological regime of the river, and are compared to the temporal variations in river bank form and skin roughness components as the bank erodes. The data are used to evaluate the extent to which there is a dynamic feedback between the bank erosion process and bank form roughness.

  2. Direct Observation of Iron-Induced Conformational Changes of Mitochondrial DNA by High-Resolution Field-Emission in-Lens Scanning Electron Microscopy

    NASA Astrophysics Data System (ADS)

    Yaffee, Marcus; Walter, Patrick; Richter, Christoph; Muller, Martin

    1996-05-01

    When respiring rat liver mitochondria are incubated in the presence of Fe(III) gluconate, their DNA (mtDNA) relaxes from the supercoiled to the open circular form dependent on the iron dose. Anaerobiosis or antioxidants fail to completely inhibit the unwinding. High-resolution field-emission in-lens scanning electron microscopy imaging, in concert with backscattered electron detection, pinpoints nanometer-range iron colloids bound to mtDNA isolated from iron-exposed mitochondria. High-resolution field-emission in-lens scanning electron microscopy with backscattered electron detection imaging permits simultaneous detailed visual analysis of DNA topology, iron dose-dependent mtDNA unwinding, and assessment of iron colloid formation on mtDNA strands.

  3. Three-dimensional analysis of vesicle and crystal fragment textures in pumice using high-resolution X-ray CT: Textural evidence of eruptive processes

    NASA Astrophysics Data System (ADS)

    Ketcham, R. A.; Gardner, J. E.; Abbott, S.

    2011-12-01

    Three-dimensional analysis of high-resolution X-ray computed tomographic (CT) imagery of pumice from Popocatépetl Volcano in central Mexico yields fresh insights into processes of vesicle formation and coalescence and crystal fragmentation that occur during explosive volcanism. Six ~2 cm pumice fragments of varying bulk vesicularity were imaged at ~20 μm resolution. Three-dimensional blob and fabric analysis quantitatively document textural features, and visualization facilitated contextualization of measurements and overall interpretation. Vesicles range in size from mm-scale to below the resolution of the scan data. By comparing the whole-sample 3D vesicle size distributions derived from CT with more detailed distributions from sub-volumes obtained by standard petrographic analysis, we can discern two distinct, roughly log-normal populations in each sample. Vesicles in all samples have preferred orientations, and fabric analysis based on the star volume distribution and displayed as 3D rose diagrams documents a range of preferred shapes from elongate to flattened. Aspect ratios range from 1 to 6, and converge to values of ~2-3 with increasing size. Surface to volume ratios show increasing departure from sphericity with increasing size, which is probably attributable in large part to irregular shapes caused by coalescence. The vesicle fabric was strongest in the highest-vesicularity sample. Some pumices showed evidence of welding or poor mixing between two or more differently devolatilized portions of melt. Interfaces are in some cases apparently welded, with low-vesicularity glass contact zones, and in others are simply sub-planar intersections between distinct glasses. In one instance of the latter, correlated vesicle and phenocryst orientations across both melt portions and not parallel to their interface suggests that their juxtaposition took place before final eruption, while there was still time for fabric development. The pumices show abundant evidence of

  4. Automated segmentation of the lungs from high resolution CT images for quantitative study of chronic obstructive pulmonary diseases

    NASA Astrophysics Data System (ADS)

    Garg, Ishita; Karwoski, Ronald A.; Camp, Jon J.; Bartholmai, Brian J.; Robb, Richard A.

    2005-04-01

    Chronic obstructive pulmonary diseases (COPD) are debilitating conditions of the lung and are the fourth leading cause of death in the United States. Early diagnosis is critical for timely intervention and effective treatment. The ability to quantify particular imaging features of specific pathology and accurately assess progression or response to treatment with current imaging tools is relatively poor. The goal of this project was to develop automated segmentation techniques that would be clinically useful as computer assisted diagnostic tools for COPD. The lungs were segmented using an optimized segmentation threshold and the trachea was segmented using a fixed threshold characteristic of air. The segmented images were smoothed by a morphological close operation using spherical elements of different sizes. The results were compared to other segmentation approaches using an optimized threshold to segment the trachea. Comparison of the segmentation results from 10 datasets showed that the method of trachea segmentation using a fixed air threshold followed by morphological closing with spherical element of size 23x23x5 yielded the best results. Inclusion of greater number of pulmonary vessels in the lung volume is important for the development of computer assisted diagnostic tools because the physiological changes of COPD can result in quantifiable anatomic changes in pulmonary vessels. Using a fixed threshold to segment the trachea removed airways from the lungs to a better extent as compared to using an optimized threshold. Preliminary measurements gathered from patient"s CT scans suggest that segmented images can be used for accurate analysis of total lung volume and volumes of regional lung parenchyma. Additionally, reproducible segmentation allows for quantification of specific pathologic features, such as lower intensity pixels, which are characteristic of abnormal air spaces in diseases like emphysema.

  5. A detailed comparison of high-resolution paleoclimatic records produced by XRF core scanning to conventional measurements: examples from the Nile and Gallipoli area

    NASA Astrophysics Data System (ADS)

    Hennekam, Rick; Goudeau, Marie-Louise; De Lange, Gert J.

    2014-05-01

    The X-ray fluorescence (XRF) core scan technique is due to its high-sampling resolution, speed, and cost, an attractive tool for paleoceanographic and sedimentological studies. Nevertheless, analytical deviations may occur in such scan data caused by the physical properties of a (wet) sediment surface (i.e. grain size, water film formation under the covering plastic etc.). To elaborate on potential XRF-scan measurement artefacts, we will compare our results from XRF core scan to those from XRF-bead and/or ICP-OES done on parallel samples for several marine cores from the Nile delta and Gallipoli area. We focus on elements, and ratios, often used in high-resolution paleoenvironmental studies of marginal basins. We show that large deviations in XRF core scan results can occur, especially in very water-rich core sections with high interstitial water contents. Subtle variability in water film thickness can cause substantial variability in elemental counts of elements with shallower response depths. These artifacts occur on cm-scales, leading to apparent variability of all elements from Al to Fe on these same scales. To avoid erroneous paleoenvironmental interpretations we show ways of recognizing these effects, as well as possibilities for further amending for these effects. The removal of such erroneous analytical results is essential for the adequate interpretation of in particular high-resolution paleoclimate studies.

  6. Large-Volume Reconstruction of Brain Tissue from High-Resolution Serial Section Images Acquired by SEM-Based Scanning Transmission Electron Microscopy

    PubMed Central

    Kuwajima, Masaaki; Mendenhall, John M.; Harris, Kristen M.

    2013-01-01

    With recent improvements in instrumentation and computational tools, serial section electron microscopy has become increasingly straightforward. A new method for imaging ultrathin serial sections is developed based on a field emission scanning electron microscope fitted with a transmitted electron detector. This method is capable of automatically acquiring high-resolution serial images with a large field size and very little optical and physical distortions. In this chapter, we describe the procedures leading to the generation and analyses of a large-volume stack of high-resolution images (64 μm × 64 μm × 10 μm, or larger, at 2 nm pixel size), including how to obtain large-area serial sections of uniform thickness from well-preserved brain tissue that is rapidly perfusion-fixed with mixed aldehydes, processed with a microwave-enhanced method, and embedded into epoxy resin. PMID:23086880

  7. Helium ion microscopy and ultra-high-resolution scanning electron microscopy analysis of membrane-extracted cells reveals novel characteristics of the cytoskeleton of Giardia intestinalis.

    PubMed

    Gadelha, Ana Paula Rocha; Benchimol, Marlene; de Souza, Wanderley

    2015-06-01

    Giardia intestinalis presents a complex microtubular cytoskeleton formed by specialized structures, such as the adhesive disk, four pairs of flagella, the funis and the median body. The ultrastructural organization of the Giardia cytoskeleton has been analyzed using different microscopic techniques, including high-resolution scanning electron microscopy. Recent advances in scanning microscopy technology have opened a new venue for the characterization of cellular structures and include scanning probe microscopy techniques such as ultra-high-resolution scanning electron microscopy (UHRSEM) and helium ion microscopy (HIM). Here, we studied the organization of the cytoskeleton of G. intestinalis trophozoites using UHRSEM and HIM in membrane-extracted cells. The results revealed a number of new cytoskeletal elements associated with the lateral crest and the dorsal surface of the parasite. The fine structure of the banded collar was also observed. The marginal plates were seen linked to a network of filaments, which were continuous with filaments parallel to the main cell axis. Cytoplasmic filaments that supported the internal structures were seen by the first time. Using anti-actin antibody, we observed a labeling in these filamentous structures. Taken together, these data revealed new surface characteristics of the cytoskeleton of G. intestinalis and may contribute to an improved understanding of the structural organization of trophozoites. PMID:25956335

  8. A scanning, all-fiber Sagnac interferometer for high resolution magneto-optic measurements at 820 nm

    SciTech Connect

    Fried, Alexander; Fejer, Martin; Kapitulnik, Aharon

    2014-10-15

    The Sagnac Interferometer has historically been used for detecting non-reciprocal phenomena, such as rotation. We demonstrate an apparatus in which this technique is employed for high resolution measurements of the Magneto-Optical Polar Kerr effect—a direct indicator of magnetism. Previous designs have incorporated free-space components which are bulky and difficult to align. We improve upon this technique by using all fiber-optic coupled components and demonstrate operation at a new wavelength, 820 nm, with which we can achieve better than 1 μrad resolution. Mounting the system on a piezo-electric scanner allows us to acquire diffraction limited images with 1.5 μm spatial resolution. We also provide extensive discussion on the details and of the Sagnac Interferometer's construction.

  9. (Un)targeted Scanning of Locks of Hair for Drugs of Abuse by Direct Analysis in Real Time-High-Resolution Mass Spectrometry.

    PubMed

    Duvivier, Wilco F; van Putten, Marc R; van Beek, Teris A; Nielen, Michel W F

    2016-02-16

    Forensic hair evidence can be used to obtain retrospective timelines of drug use by analysis of hair segments. However, this is a laborious and time-consuming process, and mass spectrometric (MS) imaging techniques, which show great potential for single-hair targeted analysis, are less useful due to differences in hair growth rate between individual hairs. As an alternative, a fast untargeted analysis method was developed that uses direct analysis in real time-high-resolution mass spectrometry (DART-HRMS) to longitudinally scan intact locks of hair without extensive sample preparation or segmentation. The hair scan method was validated for cocaine against an accredited liquid chromatography/tandem mass spectrometry (LC/MS/MS) method. The detection limit for cocaine in hair was found to comply with the cutoff value of 0.5 ng/mg recommended by the Society of Hair Testing; that is, the DART hair scan method is amenable to forensic cases. Under DART conditions, no significant thermal degradation of cocaine occurred. The standard DART spot size of 5.1 ± 1.1 mm could be improved to 3.3 ± 1.0 mm, corresponding to approximately 10 days of hair growth, by using a high spatial resolution exit cone. By use of data-dependent product ion scans, multiple drugs of abuse could be detected in a single drug user hair scan with confirmation of identity by both exact mass and MS/HRMS fragmentation patterns. Furthermore, full-scan high-resolution data were retrospectively interrogated versus a list of more than 100 compounds and revealed additional hits and temporal profiles in good correlation with reported drug use. PMID:26813807

  10. Self-sensing cantilevers with integrated conductive coaxial tips for high-resolution electrical scanning probe metrology

    NASA Astrophysics Data System (ADS)

    Haemmerli, Alexandre J.; Harjee, Nahid; Koenig, Markus; Garcia, Andrei G. F.; Goldhaber-Gordon, David; Pruitt, Beth L.

    2015-07-01

    The lateral resolution of many electrical scanning probe techniques is limited by the spatial extent of the electrostatic potential profiles produced by their probes. Conventional unshielded conductive atomic force microscopy probes produce broad potential profiles. Shielded probes could offer higher resolution and easier data interpretation in the study of nanostructures. Electrical scanning probe techniques require a method of locating structures of interest, often by mapping surface topography. As the samples studied with these techniques are often photosensitive, the typical laser measurement of cantilever deflection can excite the sample, causing undesirable changes electrical properties. In this work, we present the design, fabrication, and characterization of probes that integrate coaxial tips for spatially sharp potential profiles with piezoresistors for self-contained, electrical displacement sensing. With the apex 100 nm above the sample surface, the electrostatic potential profile produced by our coaxial tips is more than 2 times narrower than that of unshielded tips with no long tails. In a scan bandwidth of 1 Hz-10 kHz, our probes have a displacement resolution of 2.9 Å at 293 K and 79 Å at 2 K, where the low-temperature performance is limited by amplifier noise. We show scanning gate microscopy images of a quantum point contact obtained with our probes, highlighting the improvement to lateral resolution resulting from the coaxial tip.

  11. Self-sensing cantilevers with integrated conductive coaxial tips for high-resolution electrical scanning probe metrology

    SciTech Connect

    Haemmerli, Alexandre J.; Pruitt, Beth L.; Harjee, Nahid; Koenig, Markus; Garcia, Andrei G. F.; Goldhaber-Gordon, David

    2015-07-21

    The lateral resolution of many electrical scanning probe techniques is limited by the spatial extent of the electrostatic potential profiles produced by their probes. Conventional unshielded conductive atomic force microscopy probes produce broad potential profiles. Shielded probes could offer higher resolution and easier data interpretation in the study of nanostructures. Electrical scanning probe techniques require a method of locating structures of interest, often by mapping surface topography. As the samples studied with these techniques are often photosensitive, the typical laser measurement of cantilever deflection can excite the sample, causing undesirable changes electrical properties. In this work, we present the design, fabrication, and characterization of probes that integrate coaxial tips for spatially sharp potential profiles with piezoresistors for self-contained, electrical displacement sensing. With the apex 100 nm above the sample surface, the electrostatic potential profile produced by our coaxial tips is more than 2 times narrower than that of unshielded tips with no long tails. In a scan bandwidth of 1 Hz–10 kHz, our probes have a displacement resolution of 2.9 Å at 293 K and 79 Å at 2 K, where the low-temperature performance is limited by amplifier noise. We show scanning gate microscopy images of a quantum point contact obtained with our probes, highlighting the improvement to lateral resolution resulting from the coaxial tip.

  12. Liquid chromatography with high resolution mass spectrometry for identification of organic contaminants in fish fillet: screening and quantification assessment using two scan modes for data acquisition.

    PubMed

    Munaretto, Juliana S; May, Marília M; Saibt, Nathália; Zanella, Renato

    2016-07-22

    This study proposed a strategy to identify and quantify 182 organic contaminants from different chemical classes, as for instance pesticides, veterinary drug and personal care products, in fish fillet using liquid chromatography coupled to quadrupole time-of-flight mass spectrometry (LC-QToF/MS). For this purpose, two different scan methods (full scan and all ions MS/MS) were evaluated to assess the best option for screening analysis in spiked fish fillet samples. In general, full scan acquisition was found to be more reliable (84%) in the automatic identification and quantification when compared to all ions MS/MS with 72% of the compounds detected. Additionally, a qualitative automatic search showed a mass accuracy error below 5ppm for 77% of the compounds in full scan mode compared to only 52% in all ions MS/MS scan. However, all ions MS/MS provides fragmentation information of the target compounds. Undoubtedly, structural information of a wide number of compounds can be obtained using high resolution mass spectrometry (HRMS), but it is necessary thoroughly assess it, in order to choose the best scan mode. PMID:27324622

  13. State-of-the-art in CT hardware and scan modes for cardiovascular CT

    PubMed Central

    Halliburton, Sandra; Arbab-Zadeh, Armin; Dey, Damini; Einstein, Andrew J.; Gentry, Ralph; George, Richard T.; Gerber, Thomas; Mahesh, Mahadevappa; Weigold, Wm. Guy

    2013-01-01

    Multidetector row computed tomography (CT) allows noninvasive anatomic and functional imaging of the heart, great vessels, and the coronary arteries. In recent years, there have been several advances in CT hardware, which have expanded the clinical utility of CT for cardiovascular imaging; such advances are ongoing. This review article from the Society of Cardiovascular Computed Tomography (SCCT) Basic and Emerging Sciences and Technology (BEST) Working Group summarizes the technical aspects of current state-of-the-art CT hardware and describes the scan modes this hardware supports for cardiovascular CT imaging. PMID:22551595

  14. Dynamic CT scanning of spinal column trauma

    SciTech Connect

    Brown, B.M.; Brant-Zawadzki, M.; Cann, C.E.

    1982-12-01

    Dynamic sequential computed tomographic scanning with automatic table incrementation uses low milliampere-second technique to eliminate tube cooling delays between scanning slices and, thus, markedly shortens examination times. A total of 25 patients with spinal column trauma involving 28 levels were studied with dynamic scans and retrospectively reviewed. Dynamic studies were considerably faster than conventional spine examinations and yielded reliable diagnosis. Bone disruption and subluxation was accurately evaluated, and the use of intrathecal metrizamide in low doses allowed direct visualization of spinal cord or radicular compromise. Multiplanar image reformation was aided by the dynamic incrementation technique, since motion between slices (and the resulting misregistration artifact on image reformation) was minimized. A phantom was devised to test spatial resolution of computed tomography for objects 1-3 mm in size and disclosed minimal differences for dynamic and conventional computed tomographic techniques in resolving medium-to-high-contrast objects.

  15. High-resolution computed tomography of the paranasal sinuses, pharynx and related regions: Impact of CT identification on diagnosis and patient management

    SciTech Connect

    Maatman, G.

    1986-01-01

    The purpose of this textbook is two-fold: to define the normal anatomic structure and pathologic conditions of the nose, paranasal sinuses, pharynx and soft tissues, and to discuss the diagnostic impact and ultimate-effect of computed tomography (CT) in the treatment of patients with head and neck disorders. The two chapters on normal gross and CT anatomic configuration are meticulously constructed. The subsequent sections on pathologic conditions are illustrated with examples of neoplastic disease. The CT scans are very good; a few of these were obtained in the direct sagittal plane. There is considerable discussion of the reasons that CT is equal to better than, or worse than other imaging modalities with respect to patient treatment in terms of both diagnosis and therapy.

  16. High resolution scanning electron microscopy of rabbit corneal endothelium to show effects of UV-visible irradiation in the presence of chlorpromazine

    SciTech Connect

    Lea, P.J.; Hollenberg, M.J.; Menon, I.A.; Temkin, R.J.; Persad, S.D.; Basu, P.K. )

    1989-01-01

    The ultrastructure of rabbit cornea endothelial cells was examined by scanning electron microscopy (SEM) in freeze-cleaved corneas using a Hitachi S-570 scanning electron microscope in the high resolution mode (HRSEM). In order to study phototoxic effects in vitro, rabbit corneas (experimental) were cultured as organ culture in the presence of 5 micrograms/ml chlorpromazine (CPZ) and irradiated. For comparison, control 1 corneas were not irradiated but incubated in the dark without CPZ in the medium; control 2 corneas were also kept in the dark but in the presence of CPZ; control 3 corneas were irradiated with no CPZ in the medium. Cellular damage was not seen in the three types of control corneas, but in the experimental corneas the endothelial cells showed extensive disruption of the cell membrane and some deterioration of the intracellular components. Our study confirmed that HRSEM is a satisfactory new technique for visualizing damage of the intracellular organelles of corneal endothelium.

  17. Design of a high-resolution small-animal SPECT-CT system sharing a CdTe semiconductor detector

    NASA Astrophysics Data System (ADS)

    Ryu, Hyun-Ju; Lee, Young-Jin; Lee, Seung-Wan; Cho, Hyo-Min; Choi, Yu-Na; Kim, Hee-Joung

    2012-07-01

    A single photon emission computed tomography (SPECT) system with a co-registered X-y computed tomography (CT) system allows the convergence of functional information and morphologic information. The localization of radiopharmaceuticals on a SPECT can be enhanced by combining the SPECT with an anatomical modality, such as X-ray CT. Gamma-ray imaging for nuclear medicine devices and X-ray imaging systems for diagnostics has recently been developed based on semiconductor detectors, and semiconductor detector materials such as cadmium telluride (CdTe) or cadmium zinc telluride (CZT) are available for both X-ray and gamma-ray systems for small-animal imaging. CdTe or CZT detectors provide strong absorption and high detection efficiency of high energy X-ray and gamma-ray photons because of their large atomic numbers. In this study, a pinhole collimator SPECT system sharing a cadmium telluride (CdTe) detector with a CT was designed. The GEANT4 application for tomographic emission (GATE) v.6.1 was used for the simulation. The pinhole collimator was designed to obtain a high spatial resolution of the SPECT system. The acquisition time for each projection was 40 seconds, and 60 projections were obtained for tomographic image acquisition. The reconstruction was performed using ordered subset expectation maximization (OS-EM) algorithms. The sensitivity and the spatial resolution were measured on the GATE simulation to evaluate the system characteristics. The spatial resolution of the system calculated from the FWHM of Gaussian fitted PSF curve was 0.69 mm, and the sensitivity of the system was measured to be 0.354 cps/kBq by using a Tc-99m point source of 1 MBq for 800 seconds. A phantom study was performed to verify the design of the dual imaging modality system. The system will be built as designed, and it can be applied as a pre-clinical imaging system.

  18. CT Scanning Imaging Method Based on a Spherical Trajectory.

    PubMed

    Chen, Ping; Han, Yan; Gui, Zhiguo

    2016-01-01

    In industrial computed tomography (CT), the mismatch between the X-ray energy and the effective thickness makes it difficult to ensure the integrity of projection data using the traditional scanning model, because of the limitations of the object's complex structure. So, we have developed a CT imaging method that is based on a spherical trajectory. Considering an unrestrained trajectory for iterative reconstruction, an iterative algorithm can be used to realise the CT reconstruction of a spherical trajectory for complete projection data only. Also, an inclined circle trajectory is used as an example of a spherical trajectory to illustrate the accuracy and feasibility of this new scanning method. The simulation results indicate that the new method produces superior results for a larger cone-beam angle, a limited angle and tabular objects compared with traditional circle trajectory scanning. PMID:26934744

  19. CT Scanning Imaging Method Based on a Spherical Trajectory

    PubMed Central

    2016-01-01

    In industrial computed tomography (CT), the mismatch between the X-ray energy and the effective thickness makes it difficult to ensure the integrity of projection data using the traditional scanning model, because of the limitations of the object’s complex structure. So, we have developed a CT imaging method that is based on a spherical trajectory. Considering an unrestrained trajectory for iterative reconstruction, an iterative algorithm can be used to realise the CT reconstruction of a spherical trajectory for complete projection data only. Also, an inclined circle trajectory is used as an example of a spherical trajectory to illustrate the accuracy and feasibility of this new scanning method. The simulation results indicate that the new method produces superior results for a larger cone-beam angle, a limited angle and tabular objects compared with traditional circle trajectory scanning. PMID:26934744

  20. [Usefulness of CT scan in the diagnosis of pulmonary aspergilloma].

    PubMed

    Gea, J; Arán, X; Sauleda, J; Broquetas, J M; Alegret, X; Bartrina, J

    1991-05-01

    Early diagnosis and precise anatomical localization of aspergillomas are essential for an effective treatment of their complications. We have evaluated the usefulness of thorax CT scan in the fulfillment of these objectives. Nine consecutive patients were studied with a presumable diagnosis of pulmonary aspergilloma. A thorax CT scan was performed in all patients (sections every 5 to 10 mm) in lying position and with lateral mobilizations. This technique allowed to rule out as fibrotic lesions some of the images previously attributed to mycetomas by conventional X-ray. On the other hand it helped to identify small size aspergillomas, to precise their localization and to demonstrate the possible communication between the main cavity and bronchial tree. In three patients who died in the period immediately following the study an excellent correlation between CT scan and underlying pathological lesions was observed. PMID:1891635

  1. High-resolution epi-illumination raster-scan optoacoustic mesoscopy for imaging of model organisms and microvessels

    NASA Astrophysics Data System (ADS)

    Omar, Murad; Soliman, Dominik; Gateau, Jérôme; Ntziachristos, Vasilis

    2015-07-01

    We have developed an epi-illumination raster-scan optoacoustic mesoscopy system (RSOM), the new system is capable of imaging model organisms, and vasculature. The newly developed system is based on a custom designed; spherically focused detector with a Characterization of the system shows an isotropic lateral resolution of 18 μm, and an axial resolution of 4 μm. The scan times are on the order of 8 minutes for a field of view of 10×10 mm2. The achieved resolution is slightly degraded up to a depth of 5 mm. After characterizing the system we showcase it's performance on a zebrafish ex vivo, and an excised mouse ear. Additionally, to improve the visibility of small structures we have reconstructed the high frequencies, and the low frequencies separately, and at the end overplayed the two reconstructions using different colors, this way the high frequencies are not masked by the low frequencies which have a higher signal to noise ratio.

  2. A system for high resolution 3D mapping using laser radar and requiring no beam scanning mechanisms

    NASA Astrophysics Data System (ADS)

    Rademacher, Paul

    1988-06-01

    The inherently high angular and range resolution capabilities associated with radar systems operating at optical frequencies are at once a blessing and a curse. Standard implementations consist of very narrow field of view optical receivers operating in conjunction with laser transmitters or even narrower illumination beamwidth. While high angular resolution is thus achieved, mechanical scanning is required to gather data over extended fields of view. The many laser pulse transmissions necessary to cover the entire field of view increase the detectability of the system by enemy sensors. A system concept is proposed which, through the use of a single laser transmitter and multiple optical receivers, largely eliminate these deficiencies. Complete 3D data over a broad angular field of view and depth of field can be gathered based upon the reflections from a single transmitted laser pulse. Covert operation is enhanced as a result of the sparse laser transmissions required. The eye safety characteristics of the system are also enhanced. Proprietary coding of optical shutters in each of the multiple optical receivers permits the number of such receivers to be reduced to a very practical few. An alternative configuration of the system reduces the number of receivers required to one, at the expense of increased data acquisition time. The multiple receiver configuration is simply a parallel processing implementation of the single receiver approach. While data rate is reduced by the single receiver configuration, it still greatly exceeds that of scanning systems, and hardware complexity is also reduced significantly.

  3. Evaluation of the relationship between smear positivity and high-resolution CT findings in children with pulmonary tuberculosis

    PubMed Central

    Bolursaz, Mohammad Reza; Mehrian, Payam; Aghahosseini, Farahnaz; Lotfian, Ferial; Khalilzadeh, Soheila; Baghaie, Nooshin; Hassanzad, Maryam; Velayati, Ali Akbar

    2014-01-01

    Summary Background The aim of this study is to find a relationship between the radiological manifestations of childhood tuberculosis on a high-resolution computed tomography (HRCT) and the results of sputum smear. This study aims to propose an alternative indicator of infectivity in terms of prevention of disease transmission through selective isolation policy in children whose clinical condition is highly suggestive of tuberculosis. Material/Methods This retrospective comparative study was performed on 95 children under 15 years of age diagnosed with tuberculosis based on both WHO criteria and positive sputum culture for mycobacterium Tuberculosis. The children were admitted for TB screening in the pediatric department of national research institute of tuberculosis and lung disease (NRITLD) between 2008–2012. Direct smear collected from sputum or gastric lavage, as well as HRCT were performed in all children prior to administration of medical therapy. Children were divided into 2 groups based on positive and negative smear results. HRCT abnormalities, as well as their anatomical distribution were compared between these 2 groups using multivariate analytic model. Results The most prevalent abnormalities in the positive smear group were consolidation, tree-in-bud pattern, upper lobe nodular infiltration and cavitation. The negative smear group featured lymphadenopathy, consolidation, collapse and nodular infiltration in the upper lobe. Cavity, tree- in-bud pattern and upper lobe nodular infiltration were highly associated with smear positivity in children. Conversely, lymphadenopathy and collapse had significant association with a negative smear. Conclusions This study revealed that cavity, tree-in-bud and upper lobe nodular infiltration has significant association with smear positivity in childhood tuberculosis. On the other hand, lymphadenopathy and collapse were closely associated with smear negativity in this age group. It was also demonstrated that children

  4. Laser microbeam CT scanning of dosimetry gels

    NASA Astrophysics Data System (ADS)

    Maryanski, Marek J.; Ranade, Manisha K.

    2001-06-01

    A novel design of an optical tomographic scanner is described that can be used for 3D mapping of optical attenuation coefficient within translucent cylindrical objects with spatial resolution on the order of 100 microns. Our scanner design utilizes the cylindrical geometry of the imaged object to obtain the desired paths of the scanning light rays. A rotating mirror and a photodetector are placed at two opposite foci of the translucent cylinder that acts as a cylindrical lens. A He-Ne laser beam passes first through a focusing lens and then is reflected by the rotating mirror, so as to scan the interior of the cylinder with focused and parallel paraxial rays that are subsequently collected by the photodetector to produce the projection data, as the cylinder rotates in small angle increments between projections. Filtered backprojection is then used to reconstruct planar distributions of optical attenuation coefficient in the cylinder. Multiplanar scans are used to obtain a complete 3D tomographic reconstruction. Among other applications, the scanner can be used in radiation therapy dosimetry and quality assurance for mapping 3D radiation dose distributions in various types of tissue-equivalent gel phantoms that change their optical attenuation coefficients in proportion to the absorbed radiation dose.

  5. Optimal experimental design for the detection of light atoms from high-resolution scanning transmission electron microscopy images

    SciTech Connect

    Gonnissen, J.; De Backer, A.; Martinez, G. T.; Van Aert, S.; Dekker, A. J. den; Rosenauer, A.; Sijbers, J.

    2014-08-11

    We report an innovative method to explore the optimal experimental settings to detect light atoms from scanning transmission electron microscopy (STEM) images. Since light elements play a key role in many technologically important materials, such as lithium-battery devices or hydrogen storage applications, much effort has been made to optimize the STEM technique in order to detect light elements. Therefore, classical performance criteria, such as contrast or signal-to-noise ratio, are often discussed hereby aiming at improvements of the direct visual interpretability. However, when images are interpreted quantitatively, one needs an alternative criterion, which we derive based on statistical detection theory. Using realistic simulations of technologically important materials, we demonstrate the benefits of the proposed method and compare the results with existing approaches.

  6. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging

    PubMed Central

    Boulanger, Jérôme; Gueudry, Charles; Münch, Daniel; Cinquin, Bertrand; Paul-Gilloteaux, Perrine; Bardin, Sabine; Guérin, Christophe; Senger, Fabrice; Blanchoin, Laurent; Salamero, Jean

    2014-01-01

    Total internal reflection fluorescence microscopy (TIRFM) is the method of choice to visualize a variety of cellular processes in particular events localized near the plasma membrane of live adherent cells. This imaging technique not relying on particular fluorescent probes provides a high sectioning capability. It is, however, restricted to a single plane. We present here a method based on a versatile design enabling fast multiwavelength azimuthal averaging and incidence angles scanning to computationally reconstruct 3D images sequences. We achieve unprecedented 50-nm axial resolution over a range of 800 nm above the coverslip. We apply this imaging modality to obtain structural and dynamical information about 3D actin architectures. We also temporally decipher distinct Rab11a-dependent exocytosis events in 3D at a rate of seven stacks per second. PMID:25404337

  7. High-resolution three-dimensional scanning optical image system for intrinsic and extrinsic contrast agents in tissue

    NASA Astrophysics Data System (ADS)

    Gu, Yueqing; Qian, Zhiyu; Chen, Jinxian; Blessington, Dana; Ramanujam, Nimmi; Chance, Britton

    2002-01-01

    This article presents the theory and development of a three-dimensional (3D) imaging instrument capable of determining the biochemical properties of tissue by measuring the absorption or fluorescence of different intrinsic and extrinsic agents simultaneously. A bifurcated optical fiber bundle, serving to deliver the excitation light and collect the emission or reflection light, scans over the flat tissue surface retrieving optical signals in each pixel. Two-dimensional (2D) images of a series of subsequent sections are obtained after signal conversion and processing to yield a 3D image. Manipulation of the scanning step and diameter size of the fibers within the bundle, the spatial resolution of the instrument attains a maximum of 40 × 40 × 10 μm3. The wavelength range is extended from ultraviolet to the near infrared (NIR) through specialized optical design, typically employed for the NIR extrinsic contrast agents study. The instrument is most applicable in situations involving the measurement of fluorescence or absorption at any specific wavelength within the spectrum range. Flavoprotein and nicotinamide adeine dinucleotide are the two typical intrinsic agents indicating the oxidization and reduction status of the tissue sample, with their fluorescence detected at wavelengths of 540 and 440 nm, respectively. Oxy and deoxy hemoglobin are two other significant intrinsic agents for evaluating the blood oxygenation saturation by recording their absorptions at two different wavelengths of 577 and 546 nm. These intrinsic agents were measured in this study for comparison of biochemical properties of rat liver in different gas inhalation treatments. Indocyanine green, a NIR extrinsic contrast agent measured at wavelengths of 780 nm/830 nm as excitation/emission can indicate blood pooling by displaying the distribution of blood vessels within a 9 L tumor. The advantage of high sensitivity, spatial resolution, and broad applied potentiality were demonstrated by the

  8. Digital radiographic localization for CT scanning of the larynx

    SciTech Connect

    Silverman, P.M.; Korobkin, M.; Rauch, R.F.

    1983-12-01

    Computed tomography (CT) of the larynx is the preferred method for staging laryngeal carcinoma and assessing the extent of injury from trauma. The standard method of examination consists of 5 mm contiguous scans throughout the larynx in quiet respiration. Scans are performed with the patient supine with the neck slightly extended allowing the long axis of the larynx to be perpendicular to the scanning plane. A complete examination requires scanning from the supraglottic region (level of hyoid bone) to the subglottic region (level of cricoid cartlage). In the authors' experience when this method is used, multiple scans are performed cephalad to the level of interest because no upper limit of the examination is established before transaxial scans are done. We have used the lateral digital radiograph of the neck to identify specific landmarks so that the upper and lower limets of the examination can be established before scanning.

  9. Treatment of Alzheimer Disease With CT Scans

    PubMed Central

    Moore, Eugene R.; Hosfeld, Victor D.; Nadolski, David L.

    2016-01-01

    Alzheimer disease (AD) primarily affects older adults. This neurodegenerative disorder is the most common cause of dementia and is a leading source of their morbidity and mortality. Patient care costs in the United States are about 200 billion dollars and will more than double by 2040. This case report describes the remarkable improvement in a patient with advanced AD in hospice who received 5 computed tomography scans of the brain, about 40 mGy each, over a period of 3 months. The mechanism appears to be radiation-induced upregulation of the patient’s adaptive protection systems against AD, which partially restored cognition, memory, speech, movement, and appetite. PMID:27103883

  10. Sedimentary features of the south Texas continental slope as revealed by side-scan sonar and high-resolution seismic data

    SciTech Connect

    Rothwell, R.G.; Kenyon, N.H. ); McGregor, B.A. )

    1991-02-01

    Sedimentary provinces on the south Texas slope have been identified by their acoustic character on long-range side-scan sonar records and high-resolution seismic profiles. Probable lithofacies within these provinces have been identified by core data and by analogy with previously cored acoustic facies. In the northern part of the study area, the East Breaks Slide is a prominent mass-transport feature. Revised bathymetry shows that the slide originated on the upper slope (200-1,000 m), in front of a sandy late Wisconsinan shelf-margin delta, where the gradient is up to 3{degree}. Side-scan sonar data indicates that the slide is a strongly backscattering feature extending more than 110 km downslope from the shelf edge. it consists of two lobes that are separated by a diapiric high. Diapiric highs on the middle slope have blocked most of the flow. borehole data shows that the slide deposit contains intercalated sands and contorted bedding. The slide is therefore attributed to failure of sandy deltaic material deposited close to the shelf edge during the last period of low sea level (late Wisconsinan, circa 11-29 Ka). Core data suggests that the weakly backscattering acoustic facies adjacent to the slide are fine-grained sediments (mudturbidites and hemipelagites) of a slope mud drape. The middle slope in front of the sandy late Wisconsinan shelf-margin delta of the Rio Grande has an intermediate level of backscattering with numerous channels leading to the Sigsbee Deep. Acoustic facies mapping using long-range side-scan sonar matches well with acoustic facies mapping using 3.5-kHz high-resolution seismic profiles.

  11. Recording Approach of Heritage Sites Based on Merging Point Clouds from High Resolution Photogrammetry and Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Grussenmeyer, P.; Alby, E.; Landes, T.; Koehl, M.; Guillemin, S.; Hullo, J. F.; Assali, P.; Smigiel, E.

    2012-07-01

    Different approaches and tools are required in Cultural Heritage Documentation to deal with the complexity of monuments and sites. The documentation process has strongly changed in the last few years, always driven by technology. Accurate documentation is closely relied to advances of technology (imaging sensors, high speed scanning, automation in recording and processing data) for the purposes of conservation works, management, appraisal, assessment of the structural condition, archiving, publication and research (Patias et al., 2008). We want to focus in this paper on the recording aspects of cultural heritage documentation, especially the generation of geometric and photorealistic 3D models for accurate reconstruction and visualization purposes. The selected approaches are based on the combination of photogrammetric dense matching and Terrestrial Laser Scanning (TLS) techniques. Both techniques have pros and cons and recent advances have changed the way of the recording approach. The choice of the best workflow relies on the site configuration, the performances of the sensors, and criteria as geometry, accuracy, resolution, georeferencing, texture, and of course processing time. TLS techniques (time of flight or phase shift systems) are widely used for recording large and complex objects and sites. Point cloud generation from images by dense stereo or multi-view matching can be used as an alternative or as a complementary method to TLS. Compared to TLS, the photogrammetric solution is a low cost one, as the acquisition system is limited to a high-performance digital camera and a few accessories only. Indeed, the stereo or multi-view matching process offers a cheap, flexible and accurate solution to get 3D point clouds. Moreover, the captured images might also be used for models texturing. Several software packages are available, whether web-based, open source or commercial. The main advantage of this photogrammetric or computer vision based technology is to

  12. Toward the Cenozoic Megasplice - high-resolution XRF core scanning data and improved composite records from IODP Expedition 320: implications for fine scale paleoceanography (Invited)

    NASA Astrophysics Data System (ADS)

    Westerhold, T.; Bown, P. R.; Dunkley Jones, T.; Lyle, M. W.; Moore, T. C.; Pälike, H.; Roehl, U.; Wilkens, R. H.; Expedition 320/321 Scientists

    2010-12-01

    A critical need to study past climate change is to sufficiently constrain the ages of past climate events so that global relationships can be discerned. Integrated Ocean Drilling Program (IODP) Expedition 320 recovered high-quality pelagic Cenozoic records with over 800 dated paleomagnetic reversals and decimeter-scale cyclic sediments. These new profiles provide an outstanding framework to inter-calibrate major microfossil groups and refine magnetic polarity chrons for the late Miocene, the entire Oligocene and the late Eocene Epochs. The compilation of a Cenozoic Megasplice which integrates all available bio-, chemo-, and magnetostratigraphic data including those from key records already recovered during Ocean Drilling Program (ODP) Leg 199 is one of the major objectives of the Pacific Equatorial Age Transect (PEAT, IODP Exp. 320 & 321) and prerequisite for further reconstructing the climate history of the Equatorial Pacific in detail. Here we present extended post-cruise refinements of the shipboard composite records of IODP Exp. 320 Sites U1331, U1332, U1333, U1334 as well as ODP Leg 199 Sites 1218, 1219 and 1220. The revised composite records were used to perform a site-to-site correlation and integration of Leg 199 and Exp. 320 sites. Based on this decimeter scale correlation a high resolution integrated paleomagnetic and biostratigraphic framework for the Equatorial Pacific is established which covers the time interval from 20 to 40 Ma. This framework will be the key for further high-resolution paleoceanographic interpretations of the late Paleogene, e.g. the E/O transition. As part of our study we also present high resolution X-ray fluorescence (XRF) core scanning data acquired from more than 1200 meters of sediment cores from Exp. 320 and Leg 199 encompassing the middle Eocene to early Oligocene (magnetochrons C12n to C20n). These new, critical records enable us to improve the orbitally tuned time scale and to reconstruct variations in the carbonate

  13. Detection of macrophage activity in atherosclerosis in vivo using multichannel, high-resolution laser scanning fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Pande, Ashvin N.; Kohler, Rainer; Aikawa, Elena; Weissleder, Ralph; Jaffer, Farouc

    2006-03-01

    Molecular and cellular mechanisms of atherogenesis and its treatment are largely being unraveled by in vitro techniques. We describe methodology to directly image macrophage cell activity in vivo in a murine model of atherosclerosis using laser scanning fluorescence microscopy (LSFM) and a macrophage-targeted, near-infrared fluorescent (NIRF) magnetofluorescent nanoparticle (MFNP). Atherosclerotic apolipoprotein E deficient (apoE -/-) mice (n=10) are injected with MFNP or 0.9% saline, and wild-type mice (n=4) are injected with MFNP as additional controls. After 24 h, common carotid arteries are surgically exposed and prepared for LSFM. Multichannel LSFM of MFNP-enhanced carotid atheroma (5×5-µm in-plane resolution) shows a strong focal NIRF signal, with a plaque target-to-background ratio of 3.9+/-1.8. Minimal NIRF signal is observed in control mice. Spectrally resolved indocyanine green (ICG) fluorescence angiograms confirm the intravascular location of atheroma. On ex vivo fluorescence reflectance imaging, greater NIRF plaque signal is seen in apoE -/- MFNP mice compared to controls (p<0.01). The NIRF signal correlates well with immunostained macrophages, both by stained surface area (r=0.77) and macrophage number (r=0.86). The validated experimental methodology thus establishes a platform for investigating macrophage activity in atherosclerosis in vivo, and has implications for the detection of clinical vulnerable plaques.

  14. In vivo high-resolution structural imaging of large arteries in small rodents using two-photon laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Megens, Remco T. A.; Reitsma, Sietze; Prinzen, Lenneke; Oude Egbrink, Mirjam G. A.; Engels, Wim; Leenders, Peter J. A.; Brunenberg, Ellen J. L.; Reesink, Koen D.; Janssen, Ben J. A.; Ter Haar Romeny, Bart M.; Slaaf, Dick W.; van Zandvoort, Marc A. M. J.

    2010-01-01

    In vivo (molecular) imaging of the vessel wall of large arteries at subcellular resolution is crucial for unraveling vascular pathophysiology. We previously showed the applicability of two-photon laser scanning microscopy (TPLSM) in mounted arteries ex vivo. However, in vivo TPLSM has thus far suffered from in-frame and between-frame motion artifacts due to arterial movement with cardiac and respiratory activity. Now, motion artifacts are suppressed by accelerated image acquisition triggered on cardiac and respiratory activity. In vivo TPLSM is performed on rat renal and mouse carotid arteries, both surgically exposed and labeled fluorescently (cell nuclei, elastin, and collagen). The use of short acquisition times consistently limit in-frame motion artifacts. Additionally, triggered imaging reduces between-frame artifacts. Indeed, structures in the vessel wall (cell nuclei, elastic laminae) can be imaged at subcellular resolution. In mechanically damaged carotid arteries, even the subendothelial collagen sheet (~1 μm) is visualized using collagen-targeted quantum dots. We demonstrate stable in vivo imaging of large arteries at subcellular resolution using TPLSM triggered on cardiac and respiratory cycles. This creates great opportunities for studying (diseased) arteries in vivo or immediate validation of in vivo molecular imaging techniques such as magnetic resonance imaging (MRI), ultrasound, and positron emission tomography (PET).

  15. High-Resolution Scanning Electron Microscopy and Immuno-Gold Labeling of the Nuclear Lamina and Nuclear Pore Complex.

    PubMed

    Goldberg, Martin W

    2016-01-01

    Scanning electron microscopy (SEM) is a technique used to image surfaces. Field emission SEMs (feSEMs) can resolve structures that are ~0.5-1.5 nm apart. FeSEM, therefore is a useful technique for imaging molecular structures that exist at surfaces such as membranes. The nuclear envelope consists of four membrane surfaces, all of which may be accessible for imaging. Imaging of the cytoplasmic face of the outer membrane gives information about ribosomes and cytoskeletal attachments, as well as details of the cytoplasmic peripheral components of the nuclear pore complex, and is the most easily accessed surface. The nucleoplasmic face of the inner membrane is easily accessible in some cells, such as amphibian oocytes, giving valuable details about the organization of the nuclear lamina and how it interacts with the nuclear pore complexes. The luminal faces of both membranes are difficult to access, but may be exposed by various fracturing techniques. Protocols are presented here for the preparation, labeling, and feSEM imaging of Xenopus laevis oocyte nuclear envelopes. PMID:27147058

  16. High-resolution and site-specific scanning spreading resistance microscopy and its applications to silicon devices

    SciTech Connect

    Zhang, L.; Koike, M.; Takeno, S.; Hara, K.

    2012-11-06

    Due to the continuous reduction of the critical dimensions of semiconductor devices, it becomes very important to know the two dimensional (2D) doping profile for improving device performance. Scanning spreading resistance microscopy (SSRM) performed in high vacuum is a powerful technique for quantitative 2D-doping profiling, with high spatial resolution and wide dynamic range of carrier concentration, as well as capability of site-specific analysis for accurate position. In this paper, we review SSRM applications to source/drain engineering in Si devices and their correlation with device characteristics by demonstrating several case studies. Direct observation of (110)/(100) CMOSFETs clarified significant differences between both pFETs and nFETs on (110) and (100) silicon substrates, revealing 2D channeling effect of boron ion implantation in pFETs; as well as silicidation impact on junction leakage-current characteristics in nFETs. Furthermore, our sample-preparation breakthrough enables site-specific SSRM characterization within 60 nm ultra thin samples and therefore failure analysis of real SRAM devices, demonstrating the high potential of SSRM technology for further device scaling and for failure analysis.

  17. High-resolution spot-scan electron microscopy of microcrystals of an alpha-helical coiled-coil protein.

    PubMed

    Bullough, P A; Tulloch, P A

    1990-09-01

    We describe the electron microscopy of a crystalline assembly of an alpha-helical coiled-coil protein extracted from the ootheca of the praying mantis. Electron diffraction patterns of unstained crystals show crystal lattice sampling of the coiled-coil molecular transform to a resolution beyond 1.5 A. Using a "spot-scan" method of electron imaging, micrographs of unstained crystals have been obtained that visibly diffract laser light from crystal spacings as small as 4.3 A. A projection map was calculated to 4 A using electron diffraction amplitudes and phases from computer-processed images. The projection map clearly shows modulations in density arising from the 5.1 A alpha-helical repeat, the first time this type of modulation has been revealed by electron microscopy. The crystals have p2 plane group symmetry with a = 92.4 A, b = 150.7 A, y = 92.4 degrees. Examination of tilted specimens shows that c is approximately 18 A, indicating that the unit cell is only one molecule thick. A preliminary interpretation shows tightly packed molecules some 400 A long lying with their long axes in the plane of the projection. The molecules have a coiled-coil configuration for most of their length. The possible modes of packing of the molecules in three dimensions are discussed. PMID:2398496

  18. First application of liquid-metal-jet sources for small-animal imaging: High-resolution CT and phase-contrast tumor demarcation

    SciTech Connect

    Larsson, Daniel H.; Lundstroem, Ulf; Burvall, Anna; Hertz, Hans M.

    2013-02-15

    Purpose: Small-animal studies require images with high spatial resolution and high contrast due to the small scale of the structures. X-ray imaging systems for small animals are often limited by the microfocus source. Here, the authors investigate the applicability of liquid-metal-jet x-ray sources for such high-resolution small-animal imaging, both in tomography based on absorption and in soft-tissue tumor imaging based on in-line phase contrast. Methods: The experimental arrangement consists of a liquid-metal-jet x-ray source, the small-animal object on a rotating stage, and an imaging detector. The source-to-object and object-to-detector distances are adjusted for the preferred contrast mechanism. Two different liquid-metal-jet sources are used, one circulating a Ga/In/Sn alloy and the other an In/Ga alloy for higher penetration through thick tissue. Both sources are operated at 40-50 W electron-beam power with {approx}7 {mu}m x-ray spots, providing high spatial resolution in absorption imaging and high spatial coherence for the phase-contrast imaging. Results: High-resolution absorption imaging is demonstrated on mice with CT, showing 50 {mu}m bone details in the reconstructed slices. High-resolution phase-contrast soft-tissue imaging shows clear demarcation of mm-sized tumors at much lower dose than is required in absorption. Conclusions: This is the first application of liquid-metal-jet x-ray sources for whole-body small-animal x-ray imaging. In absorption, the method allows high-resolution tomographic skeletal imaging with potential for significantly shorter exposure times due to the power scalability of liquid-metal-jet sources. In phase contrast, the authors use a simple in-line arrangement to show distinct tumor demarcation of few-mm-sized tumors. This is, to their knowledge, the first small-animal tumor visualization with a laboratory phase-contrast system.

  19. Measurement of the retinal arteriolar response to a hyperoxic provocation in nonsmokers and smokers, using a high-resolution confocal scanning laser ophthalmoscope

    NASA Astrophysics Data System (ADS)

    O' Halloran, Margaret; O'Donoghue, Eamonn; Dainty, Chris

    2014-07-01

    We used a high-resolution confocal scanning laser ophthalmoscope to measure the magnitude of change in retinal arteriolar diameters in response to oxygen breathing in young, healthy nonsmokers and smokers. Image sequences were obtained before and during oxygen breathing. Image sequences were desinusoided, registered, and averaged, before vessel diameters were measured using a sliding linear regression filter. Arteriole diameters were observed to constrict during the first 5 min. of oxygen breathing, plateau, and remain stable while hyperoxia was maintained, returning to baseline at the end of the hyperoxic period. Blood flow to the temporal retina was found to be higher than to the nasal retina (p=0.008). The percentage constriction of vessels did not vary across retinal quadrants (p=0.372, analysis of variance) and did not depend on vessel size (p=0.538). Baseline diameters were unaffected by acute cigarette smoking. The magnitude of vasoconstriction was diminished in smokers compared to nonsmokers (p=0.017), while acute smoking did not influence the percentage constriction attained by the vessels (p=0.621). Using a high-resolution imaging technique allowed us to measure reactivity to a high degree of accuracy and to assess it in vessels of smaller caliber than were previously studied.

  20. Automated lung segmentation of low resolution CT scans of rats

    NASA Astrophysics Data System (ADS)

    Rizzo, Benjamin M.; Haworth, Steven T.; Clough, Anne V.

    2014-03-01

    Dual modality micro-CT and SPECT imaging can play an important role in preclinical studies designed to investigate mechanisms, progression, and therapies for acute lung injury in rats. SPECT imaging involves examining the uptake of radiopharmaceuticals within the lung, with the hypothesis that uptake is sensitive to the health or disease status of the lung tissue. Methods of quantifying lung uptake and comparison of right and left lung uptake generally begin with identifying and segmenting the lung region within the 3D reconstructed SPECT volume. However, identification of the lung boundaries and the fissure between the left and right lung is not always possible from the SPECT images directly since the radiopharmaceutical may be taken up by other surrounding tissues. Thus, our SPECT protocol begins with a fast CT scan, the lung boundaries are identified from the CT volume, and the CT region is coregistered with the SPECT volume to obtain the SPECT lung region. Segmenting rat lungs within the CT volume is particularly challenging due to the relatively low resolution of the images and the rat's unique anatomy. Thus, we have developed an automated segmentation algorithm for low resolution micro-CT scans that utilizes depth maps to detect fissures on the surface of the lung volume. The fissure's surface location is in turn used to interpolate the fissure throughout the lung volume. Results indicate that the segmentation method results in left and right lung regions consistent with rat lung anatomy.

  1. Ground Deformation Analysis of Blast-Induced Liquefaction at a Simulated Airport Infrastructure Using High Resolution 3D Laser Scanning

    NASA Astrophysics Data System (ADS)

    Minasian, D.; Kayen, R.; Ashford, S.; Kawamata, Y.; Sugano, T.

    2008-12-01

    In October 2007, the Port and Airport Research Institute (PARI) of the Japan Ministry of Land, Infrastructure and Transportation conducted a large-scale blast-induced liquefaction experiment in Ishikari, Hokkaido, Japan. Approximately 24,000 m2 of ground was liquefied using controlled blasting techniques to investigate the performance of airport infrastructure. The USGS and Oregon State University participated in the study and measured topographic changes in ground level using 3D laser scanning techniques (terrestrial lidar), as well as changes in shear wave velocity of the between the pre- and post-liquefied soil. This poster focuses on the lidar results. The overall objective of the PARI experiment is to assess the performance of airport infrastructure subjected to liquefaction. Specifically, the performance of pipelines and large concrete utility raceways located beneath runway pavements is of interest, as well as the performance of pavements and embankments with and without soil improvement techniques. At the site, 5-7 m of loose silty sand was placed as hydraulic fill on natural alluvial sand as an expansion of the Ishikari port facility. On a portion of the liquefied site, three 20 m by 50 m test sections were constructed to investigate the performance of improved ground beneath asphalt runways, concrete runway aprons, and open areas. Pipelines and concrete utility conduits were also buried in each section. The three ground improvement techniques investigated were sand-cement mixing, vertical drains, and colloidal silica injection. The PARI experiment provided an excellent opportunity to conduct terrestrial lidar measurements - a revolutionary tool for accurate characterization of fine-scale changes of topography and identification of subtle deformations. Lidar was used for characterizing post-blast deformations both immediately after the charges were used, and subsequently over time at intervals of 2 days, 4 days, and 5 months after blasting. Settlement

  2. Harms of CT scanning prior to surgery for suspected appendicitis.

    PubMed

    Rogers, William; Hoffman, Jerome; Noori, Naudereh

    2015-02-01

    In this brief analysis we compare the risks and benefits of performing a CT scan to confirm appendicitis prior to surgery instead of operating based on the surgeon's clinical diagnosis. We conclude that the benefit of universal imaging is to avoid 12 unnecessary appendectomies but the cost of those 12 avoided surgeries is one cancer death due to the imaging. PMID:25429870

  3. Justification of CT scans using referral guidelines for imaging.

    PubMed

    Stanescu, G; Rosca-Fartat, G; Stanescu, D

    2015-07-01

    This study analyses the efficiency of the justification of individual computed tomography (CT) procedures using the good practice guide. The conformity of the CT scans with guide's recommendations was retrospectively analysed in a paediatric emergency hospital in Romania. The involved patient doses were estimated. The results show that around one-third of the examinations were not prescribed in conformity with the guide's recommendations, but these results are affected by unclear guide provisions, discussed here. The implications of the provisions of the revised International Atomic Energy Agency's Basic Safety Standards and of the Council Directive 2013/59/EURATOM were analysed. The education and training courses for medical doctors disseminating the provisions of the good practice guide should be considered as the main support for the justification of the CT scans at the individual level. PMID:25805882

  4. Atomic arrangement at ZnTe/CdSe interfaces determined by high resolution scanning transmission electron microscopy and atom probe tomography

    SciTech Connect

    Bonef, Bastien; Rouvière, Jean-Luc; Jouneau, Pierre-Henri; Bellet-Amalric, Edith; Gérard, Lionel; Mariette, Henri; André, Régis; Bougerol, Catherine; Grenier, Adeline

    2015-02-02

    High resolution scanning transmission electron microscopy and atom probe tomography experiments reveal the presence of an intermediate layer at the interface between two binary compounds with no common atom, namely, ZnTe and CdSe for samples grown by Molecular Beam Epitaxy under standard conditions. This thin transition layer, of the order of 1 to 3 atomic planes, contains typically one monolayer of ZnSe. Even if it occurs at each interface, the direct interface, i.e., ZnTe on CdSe, is sharper than the reverse one, where the ZnSe layer is likely surrounded by alloyed layers. On the other hand, a CdTe-like interface was never observed. This interface knowledge is crucial to properly design superlattices for optoelectronic applications and to master band-gap engineering.

  5. Changes in Intracortical Microporosities Induced by Pharmaceutical Treatment of Osteoporosis as Detected by High Resolution Micro-CT

    PubMed Central

    Tommasini, Steven M.; Trinward, Andrea; Acerbo, Alvin S.; De Carlo, Francesco; Miller, Lisa M.; Judex, Stefan

    2012-01-01

    Bone’s microporosities play important biologic and mechanical roles. Here, we quantified 3D changes in cortical osteocyte-lacunae and other small porosities induced by estrogen withdrawal and two different osteoporosis treatments. Unlike 2D measurements, these data collected via synchrotron radiation-based μCT describe the size and 3D spatial distribution of a large number of porous structures. Six-month old female Sprague-Dawley rats were separated into four groups of age-matched controls, untreated OVX, OVX treated with PTH, and OVX treated with Alendronate (ALN). Intracortical microporosity of the medial quadrant of the femoral diaphysis was quantified at endosteal, intracortical, and periosteal regions of the samples, allowing the quantification of osteocyte lacunae that were formed primarily before versus after the start of treatment. Across the overall thickness of the medial cortex, lacunar volume fraction (Lc.V/TV) was significantly lower in ALN treated rats compared to PTH. In the endosteal region, average osteocyte lacunar volume () of untreated OVX rats was significantly lower than in age-matched controls, indicating a decrease in osteocyte lacunar size in bone formed on the endosteal surface after estrogen withdrawal. The effect of treatment (OVX, ALN, PTH) on the number of lacunae per tissue volume (Lc.N/TV) was dependent on the specific location within the cortex (endosteal, intracortical, periosteal). In both the endosteal and intracortical regions, Lc.N/TV was significantly lower in ALN than in untreated OVX, suggesting a site-specific effect in osteocyte lacuna density with ALN treatment. There also were a significantly greater number of small pores (5–100 μm3 in volume) in the endosteal region for PTH compared to ALN. The mechanical impact of this altered microporosity structure is unknown, but might serve to enhance, rather than deteriorate bone strength with PTH treatment, as smaller osteocyte lacunae may be better able to absorb

  6. Changes in intracortical microporosities induced by pharmaceutical treatment of osteoporosis as detected by high resolution micro-CT

    SciTech Connect

    Tommasini S. M.; Miller L.; Trinward, A.; Acerbo, A.S.; De Carlo F. and Judex, S.

    2011-12-28

    Bone's microporosities play important biologic and mechanical roles. Here, we quantified 3D changes in cortical osteocyte-lacunae and other small porosities induced by estrogen withdrawal and two different osteoporosistreatments. Unlike 2D measurements, these data collected via synchrotron radiation-based {mu}CT describe the size and 3D spatial distribution of a large number of porous structures. Six-month old female Sprague-Dawley rats were separated into four groups of age-matched controls, untreated OVX, OVX treated with PTH, and OVX treated with Alendronate (ALN). Intracortical microporosity of the medial quadrant of the femoral diaphysis was quantified at endosteal, intracortical, and periosteal regions of the samples, allowing the quantification of osteocyte lacunae that were formed primarily before versus after the start of treatment. Across the overall thickness of the medial cortex, lacunar volume fraction (Lc.V/TV) was significantly lower in ALN treated rats compared to PTH. In the endosteal region, average osteocyte lacunar volume (< Lc.V >) of untreated OVX rats was significantly lower than in age-matched controls, indicating a decrease in osteocyte lacunar size in bone formed on the endosteal surface after estrogen withdrawal. The effect of treatment (OVX, ALN, PTH) on the number of lacunae per tissue volume (Lc.N/TV) was dependent on the specific location within the cortex (endosteal, intracortical, periosteal). In both the endosteal and intracortical regions, Lc.N/TV was significantly lower in ALN than in untreated OVX, suggesting a site-specific effect in osteocyte lacuna density with ALN treatment. There also were a significantly greater number of small pores (5-100 {micro}m{sup 3} in volume) in the endosteal region for PTH compared to ALN. The mechanical impact of this altered microporosity structure is unknown, but might serve to enhance, rather than deteriorate bone strength with PTH treatment, as smaller osteocyte lacunae may be better able to

  7. Statistical Analysis of Yarn Feature Parameters in C/Epoxy Plain-Weave Composite Using Micro CT with High-Resolution Lens-Coupled Detector

    NASA Astrophysics Data System (ADS)

    Wang, Hao; Wang, Zhong-wei

    2016-08-01

    C/Epoxy plain-weave composite is difficult to clear imaging in Micro CT with flat panel detector due to the similar atomic numbers of component materials. To solve this problem, a new Micro CT equipment with high-resolution lens-coupled detector is used to reconstruct 3D images of C/Epoxy. Slice data correction with ellipse projection is used to acquire real yarn normal cross-section information. A reference period method suitable for plain-weave composite is then detailed to evaluate statistical properties of yarn feature parameters. In the process of determination of real extreme slices, dislocation phenomenon existed in the laminated composite is discovered. Several possible reasons caused this phenomenon are discussed. Systematic trends, standard deviations and correlation lengths of stochastic deviations with original and corrected data are evaluated respectively by the application of reference period method. The statistical results show that mean out-of-plane yarn waviness, semi-axes, cross-section area and aspect ratio exhibit periodic characteristics, and the maximum effect of slice data correction on all statistical properties of feature parameters is twist angle.

  8. High-resolution three-dimensional diffusion-weighted MRI/CT image data fusion for cholesteatoma surgical planning: a feasibility study.

    PubMed

    Yamashita, Koji; Hiwatashi, Akio; Togao, Osamu; Kikuchi, Kazufumi; Matsumoto, Nozomu; Obara, Makoto; Yoshiura, Takashi; Honda, Hiroshi

    2015-12-01

    The aim of the study was to assess the feasibility of high-resolution three-dimensional diffusion-weighted images (HR3D-DWIs)/multi-detector row CT (MDCT) images' data fusion for surgical planning for cholesteatoma. A total of 12 patients (7 male and 5 female; age range 11-72 years; mean 38.1 years) with cholesteatoma underwent preoperative MRI using a 3.0-T clinical unit and an 8-channel array-head coil. For each subject, HR3D-DWIs were obtained using a turbo field-echo with diffusion-sensitized driven-equilibrium preparation with 1.5 mm iso-voxel dimension. These patients also underwent MDCT with a slice thickness of 0.5 mm. Fusion of the HR3D-DWIs and MDCT images was performed using an automated rigid registration and subsequent manual fine-tuning by a board-certified neuroradiologist on a workstation. Fused images were compared to CT and findings confirmed based on operation reports. On the fused images, the extent of the cholesteatoma, which was depicted as a conspicuous high-intensity lesion could be easily evaluated with background bony structures. In all patients, the location and extent of the cholesteatoma on the fused images corresponded well with the intraoperative findings. Image fusion between HR3D-DWIs and MDCT images is feasible, and provides valuable preoperative information for surgical planning to otorhinolaryngologists. PMID:25543305

  9. Statistical Analysis of Yarn Feature Parameters in C/Epoxy Plain-Weave Composite Using Micro CT with High-Resolution Lens-Coupled Detector

    NASA Astrophysics Data System (ADS)

    Wang, Hao; Wang, Zhong-wei

    2016-02-01

    C/Epoxy plain-weave composite is difficult to clear imaging in Micro CT with flat panel detector due to the similar atomic numbers of component materials. To solve this problem, a new Micro CT equipment with high-resolution lens-coupled detector is used to reconstruct 3D images of C/Epoxy. Slice data correction with ellipse projection is used to acquire real yarn normal cross-section information. A reference period method suitable for plain-weave composite is then detailed to evaluate statistical properties of yarn feature parameters. In the process of determination of real extreme slices, dislocation phenomenon existed in the laminated composite is discovered. Several possible reasons caused this phenomenon are discussed. Systematic trends, standard deviations and correlation lengths of stochastic deviations with original and corrected data are evaluated respectively by the application of reference period method. The statistical results show that mean out-of-plane yarn waviness, semi-axes, cross-section area and aspect ratio exhibit periodic characteristics, and the maximum effect of slice data correction on all statistical properties of feature parameters is twist angle.

  10. Development of a High-Resolution Melting Approach for Scanning Beta Globin Gene Point Mutations in the Greek and Other Mediterranean Populations.

    PubMed

    Chassanidis, Christos; Boutou, Effrossyni; Voskaridou, Ersi; Balassopoulou, Angeliki

    2016-01-01

    Beta-thalassaemia is one of the most common autosomal recessive disorders worldwide. The disease's high incidence, which is observed in the broader Mediterranean area has led to the establishment of molecular diagnostics' assays to prevent affected births. Therefore, the development of a reliable, cost-effective and rapid scanning method for β globin gene point mutations, easily adapted to a routine laboratory, is absolutely essential. Here, we describe, for the first time, the development of a High-Resolution Melting Analysis (HRMA) approach, suitable for scanning the particularly heterogeneous beta globin gene mutations present in the Greek population, and thus adaptable to the Mediterranean and other areas where these mutations have been identified. Within this context, β globin gene regions containing mutations frequently identified in the Greek population were divided in ten overlapping amplicons. Our reactions' setup allowed for the simultaneous amplification of multiple primer sets and partial multiplexing, thereby resulting in significant reduction of the experimental time. DNA samples from β-thalassaemia patients/carriers with defined genotypes were tested. Distinct genotypes displayed distinguishable melting curves, enabling accurate detection of mutations. The described HRMA can be adapted to a high-throughput level. It represents a rapid, simple, cost-effective, reliable, highly feasible and sensitive method for β-thalassaemia gene scanning. PMID:27351925