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Sample records for high-resolution ct scans

  1. Auditory profile and high resolution CT scan in autism spectrum disorders children with auditory hypersensitivity.

    PubMed

    Thabet, Elsaeid M; Zaghloul, Hesham S

    2013-08-01

    Autism is the third most common developmental disorder, following mental retardationand cerebral palsy. ASD children have been described more often as beingpreoccupied with or agitated by noise. The aim of this study was to evaluate theprevalence and clinical significance of semicircular canal dehiscence detected on CTimages in ASD children with intolerance to loud sounds in an attempt to find ananatomical correlate with hyperacusis.14 ASD children with auditory hypersensitivity and 15 ASD children without auditoryhypersensitivity as control group age and gender matched were submitted to historytaking, otological examination, tympanometry and acoustic reflex thresholdmeasurement. ABR was done to validate normal peripheral hearing and integrity ofauditory brain stem pathway. High resolution CT scan petrous and temporal boneimaging was performed to all participated children. All participants had normal hearingsensitivity in ABR testing. Absolute ABR peak waves of I and III showed no statisticallysignificant difference between the two groups, while absolute wave V peak andinterpeak latencies I-V and III-V were shorter in duration in study group whencompared to the control group. CT scans revealed SSCD in 4 out of 14 of the studygroup (29%), the dehiscence was bilateral in one patient and unilateral in threepatients. None of control group showed SSCD. In conclusion, we have reportedevidence that apparent hypersensitivity to auditory stimuli (short conduction time in ABR) despite the normal physiological measures in ASD children with auditoryhypersensitivity can provide a clinical clue of a possible SSCD. PMID:23580033

  2. High Resolution Scanning Reflectarray Antenna

    NASA Technical Reports Server (NTRS)

    Romanofsky, Robert R. (Inventor); Miranda, Felix A. (Inventor)

    2000-01-01

    The present invention provides a High Resolution Scanning Reflectarray Antenna (HRSRA) for the purpose of tracking ground terminals and space craft communication applications. The present invention provides an alternative to using gimbaled parabolic dish antennas and direct radiating phased arrays. When compared to a gimbaled parabolic dish, the HRSRA offers the advantages of vibration free steering without incurring appreciable cost or prime power penalties. In addition, it offers full beam steering at a fraction of the cost of direct radiating arrays and is more efficient.

  3. High resolution extremity CT for biomechanics modeling

    SciTech Connect

    Ashby, A.E.; Brand, H.; Hollerbach, K.; Logan, C.M.; Martz, H.E.

    1995-09-23

    With the advent of ever more powerful computing and finite element analysis (FEA) capabilities, the bone and joint geometry detail available from either commercial surface definitions or from medical CT scans is inadequate. For dynamic FEA modeling of joints, precise articular contours are necessary to get appropriate contact definition. In this project, a fresh cadaver extremity was suspended in parafin in a lucite cylinder and then scanned with an industrial CT system to generate a high resolution data set for use in biomechanics modeling.

  4. CT Scans

    MedlinePlus

    ... cross-sectional pictures of your body. Doctors use CT scans to look for Broken bones Cancers Blood clots Signs of heart disease Internal bleeding During a CT scan, you lie still on a table. The table ...

  5. Petrous apex mucocele: high resolution CT.

    PubMed

    Memis, A; Memis, A; Alper, H; Calli, C; Ozer, H; Ozdamar, N

    1994-11-01

    Mucocele of the petrous apex is very rare, only three cases having been reported. Since this area is inaccessible to direct examination, imaging, preferably high resolution computed tomography (HR CT) is essential. We report a case showing an eroding, non enhancing mass with sharp, lobulated contours, within the petrous apex. The presence of a large air cell on the opposite side suggested a mucocele. PMID:7862284

  6. High-resolution scanning hall probe microscopy

    NASA Astrophysics Data System (ADS)

    Hicks, Clifford; Luan, Lan; Hendrik Bluhm, J.; Moler, Kathryn; Guikema, Janice; Zeldov, Eli; Shtrikman, Hadas

    2006-03-01

    Scanning hall sensors can be used to directly image magnetic fields at surfaces. They offer high resolution, high sensitivity, operability over a broad temperature range, and linearity. We have fabricated hall sensors on GaAs / Al0.35Ga0.65As and GaAs / Al0.3Ga0.7As heterostructures containing 2D electron gases 40, 39 and 140nm beneath the surface. The sensitive areas of our probes range from microns to 85nm on a side. We report on the field sensitivities of probes of various sizes and their spatial resolution in a scanning configuration.

  7. Reconstructing high-resolution climate using CT scanning of unsectioned stalagmites: A case study identifying the mid-Holocene onset of the Mediterranean climate in southern Iberia

    NASA Astrophysics Data System (ADS)

    Walczak, Izabela W.; Baldini, James U. L.; Baldini, Lisa M.; McDermott, Frank; Marsden, Stuart; Standish, Christopher D.; Richards, David A.; Andreo, Bartolomé; Slater, Jonathan

    2015-11-01

    The forcing mechanisms responsible for the mid-Holocene onset of the Mediterranean-type climate in south-western Europe are currently unclear, but understanding these is critical for accurate climate projections under future greenhouse gas warming. Additionally, regional studies that present conflicting patterns for the onset and advancement of Mediterranean climatic conditions complicate definitively ascribing causality. Here, we use a new high resolution stalagmite density record obtained non-destructively using Computed Tomography (CT scanning) to reconstruct southern Iberian climate between 9.3 and 2.9 ka BP. We suggest that stalagmite density can be used as a water-excess proxy, with lower densities associated with more variable drip rates, possibly reflecting increased seasonality consistent with expectations from previous studies of speleothem textures and crystal fabrics. Our results reveal an early Holocene humid interval and mid-Holocene year-round aridity that preceded the onset of Mediterranean climate at 5.3 ka BP in southern Iberia. Using this new dataset combined with previously published results, we link the gradual advancement of the Mediterranean climate to the southward migration of the North Atlantic Subtropical High induced by an orbitally driven decrease in Northern Hemisphere insolation. Future anthropogenic warming could result in a reversal of this trend, a northward migration of the North Atlantic Subtropical High, and a return to year-round aridity in south-western Europe.

  8. High-resolution scanning hall probe microscopy

    NASA Astrophysics Data System (ADS)

    Hicks, C. W.; Guikema, J. W.; Zeldov, E.

    2005-03-01

    Scanning hall sensors can be used to directly image magnetic fields at surfaces. They offer high resolution, high sensitivity, operability from cryogenic to room temperature, and linearity. We have fabricated hall sensors on GaAs / Al0.35Ga0.65As and GaAs / Al0.3Ga0.7As heterostructures, one containing a 2D electron gas 40 nanometers below the surface and another 140nm below the surface, as well as an In0.5Al0.5As / GaSb / AlSb / InAs heterostructure containing a 2DEG 21nm below the surface. The sensitive areas of our probes range from microns to 60nm on a side. We report on the field sensitivities of the probes and their spatial resolution in a scanning configuration.

  9. Ring artifact correction for high-resolution micro CT.

    PubMed

    Kyriakou, Yiannis; Prell, Daniel; Kalender, Willi A

    2009-09-01

    In high-resolution micro CT using flat detectors (FD), imperfect or defect detector elements may cause concentric-ring artifacts due to their continuous over- or underestimation of attenuation values, which often disturb image quality. We here present a dedicated image-based ring artifact correction method for high-resolution micro CT, based on median filtering of the reconstructed image and working on a transformed version of the reconstructed images in polar coordinates. This post-processing method reduced ring artifacts in the reconstructed images and improved image quality for phantom and in in vivo scans. Noise and artifacts were reduced both in transversal and in multi-planar reformations along the longitudinal axis. PMID:19661571

  10. Head CT scan

    MedlinePlus

    Brain CT; Cranial CT; CT scan - skull; CT scan - head; CT scan - orbits; CT scan - sinuses; Computed tomography - cranial ... or other growth (mass) Cerebral atrophy (loss of brain tissue) ... with the hearing nerve Stroke or transient ischemic attack (TIA)

  11. High resolution obtained by photoelectric scanning techniques.

    NASA Technical Reports Server (NTRS)

    Hall, J. S.

    1972-01-01

    Several applications of linear scanning of different types of objects are described; examples include double stars, satellites, the Red Spot of Jupiter and a landing site on the moon. This technique allows one to achieve a gain of about an order of magnitude in resolution over conventional photoelectric techniques; it is also effective in providing sufficient data for removing background effects and for the application of deconvolution procedures. Brief consideration is given to two-dimensional scanning, either at the telescope or of electronographic images in the laboratory. It is suggested that some of the techniques described should be given serious consideration for space applications.

  12. CT scan

    MedlinePlus

    CAT scan; Computed axial tomography scan; Computed tomography scan ... Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, et al. eds. Grainger & Allison's Diagnostic Radiology: A Textbook of Medical Imaging . 6th ...

  13. CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. Once you are inside the scanner, the machine's x-ray beam rotates around you. Modern spiral scanners can perform the exam without stopping. A computer ...

  14. High resolution X-ray micro-CT of ultra-thin wall space components

    NASA Astrophysics Data System (ADS)

    Roth, D. J.; Rauser, R. W.; Bowman, R. R.; Bonacuse, P. J.; Martin, R. E.; Locci, I. E.; Kelley, M.

    2013-01-01

    A high resolution micro-CT system has been assembled and is being used to provide optimal characterization for ultra-thin wall space components. The Glenn Research Center NDE Sciences Team, using this CT system, has assumed the role of inspection vendor for the Advanced Stirling Convertor (ASC) project at NASA. This article will discuss many aspects of the development of the CT scanning for this type of component, including CT system overview; inspection requirements; process development, software utilized and developed to visualize, process, and analyze results; calibration sample development; results on actual samples; correlation with optical/SEM characterization; CT modeling; and development of automatic flaw recognition software.

  15. Heart CT scan

    MedlinePlus

    CAT scan - heart; Computed axial tomography scan - heart; Computed tomography scan - heart; Calcium scoring; Multi-detector CT scan - heart; Electron beam computed tomography - heart; Agaston score; Coronary calcium scan

  16. LandScan 2013 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2014-07-01

    The LandScan data set is a worldwide population database compiled on a 30"x30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on land cover, slope, road proximity, high-resolution imagery, and other data sets. The LandScan data set was developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient populations at risk.

  17. Arm CT scan

    MedlinePlus

    CAT scan - arm; Computed axial tomography scan - arm; Computed tomography scan - arm; CT scan - arm ... Mosby; 2013:chap 57. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  18. Sinus CT scan

    MedlinePlus

    CAT scan - sinus; Computed axial tomography scan - sinus; Computed tomography scan - sinus; CT scan - sinus ... 2014:chap 67. Shaw AS, Dixon AK. Multidetector computed tomography. In: Adam A, Dixon AK, eds. Grainger & Allison's ...

  19. Leg CT scan

    MedlinePlus

    CAT scan - leg; Computed axial tomography scan - leg; Computed tomography scan - leg; CT scan - leg ... Saunders; 2012:chap 11. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  20. Pelvic CT scan

    MedlinePlus

    CAT scan - pelvis; Computed axial tomography scan - pelvis; Computed tomography scan - pelvis; CT scan - pelvis ... gov/pubmed/18381118 . Shaw AS, Dixon AK. Multidetector computed tomography. In: Grainger RC, Allison D, Adam, Dixon AK, ...

  1. Shoulder CT scan

    MedlinePlus

    CAT scan - shoulder; Computed axial tomography scan - shoulder; Computed tomography scan - shoulder; CT scan - shoulder ... Mosby; 2012:chap 57. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  2. Orbit CT scan

    MedlinePlus

    ... results may mean: Bleeding Broken eye socket bone Graves disease Infection Tumor Risks CT scans and other x- ... Livingstone; 2014:chap 66. Read More CT scan Graves disease Tumor Update Date 1/18/2015 Updated by: ...

  3. Airborne laser scanning for high-resolution mapping of Antarctica

    NASA Astrophysics Data System (ADS)

    Csatho, Bea; Schenk, Toni; Krabill, William; Wilson, Terry; Lyons, William; McKenzie, Garry; Hallam, Cheryl; Manizade, Serdar; Paulsen, Timothy

    In order to evaluate the potential of airborne laser scanning for topographic mapping in Antarctica and to establish calibration/validation sites for NASA's Ice, Cloud and land Elevation Satellite (ICESat) altimeter mission, NASA, the U.S. National Science Foundation (NSF), and the U.S. Geological Survey (USGS) joined forces to collect high-resolution airborne laser scanning data.In a two-week campaign during the 2001-2002 austral summer, NASA's Airborne Topographic Mapper (ATM) system was used to collect data over several sites in the McMurdo Sound area of Antarctica (Figure 1a). From the recorded signals, NASA computed laser points and The Ohio State University (OSU) completed the elaborate computation/verification of high-resolution Digital Elevation Models (DEMs) in 2003. This article reports about the DEM generation and some exemplary results from scientists using the geomorphologic information from the DEMs during the 2003-2004 field season.

  4. High-resolution CT of temporal bone trauma

    SciTech Connect

    Holland, B.A.; Brant-Zawadzki, M.

    1984-08-01

    Computed tomographic (CT) finding in 18 patients with temporal bone trauma were reviewed. Eight patients suffered longitudinal fractures of the petrous bone, which were associated with ossicular dislocation in two patients. Transverse fractures were detected in six patients, with a contralateral mastoid fracture in one patient. In four patients, the fractures were restricted to the mastoid region. Of the 14 patients in whom adequate neurologic evaluation was available, seven had a permanent facial nerve or hearing deficit while five suffered at least a transient neurologic deficit related to the temporal bone trauma. Routine head CT (10 mm sections) demonstrated only eight of 19 petrous bone injuries. Evidence of brain trauma or extra-axial hemotoma was seen in 12 patients. In 13 cases, high-resolution CT was also performed, demonstrating temporal bone injuries in all. This latter technique allows rapid and detailed evaluation of temporal bone trauma.

  5. Tuning and scanning control system for high resolution alexandrite lasers

    NASA Technical Reports Server (NTRS)

    Smith, James C.; Schwemmer, Geary K.

    1988-01-01

    An alexandrite laser is spectrally narrowed and tuned by the use of three optical elements. Each element provides a successively higher degree of spectral resolution. The digitally controlled tuning and scanning control servo system simultaneously positions all three optical elements to provide continuous high resolution laser spectral tuning. The user may select manual, single, or continuous modes of automated scanning of ranges up to 3.00/cm and at scan rates up to 3.85/cm/min. Scanning over an extended range of up to 9.999/cm may be achieved if the highest resolution optic is removed from the system. The control system is also capable of being remotely operated by another computer or controller via standard RS-232 serial data link.

  6. Lumbar spine CT scan

    MedlinePlus

    CAT scan - lumbar spine; Computed axial tomography scan - lumbar spine; Computed tomography scan - lumbar spine; CT - lower back ... stopping.) A computer creates separate images of the spine area, called slices. These images can be stored, ...

  7. High Resolution Scanning Electron Microscopy of Cells Using Dielectrophoresis

    PubMed Central

    Tang, Shi-Yang; Zhang, Wei; Soffe, Rebecca; Nahavandi, Sofia; Shukla, Ravi; Khoshmanesh, Khashayar

    2014-01-01

    Ultrastructural analysis of cells can reveal valuable information about their morphological, physiological, and biochemical characteristics. Scanning electron microscopy (SEM) has been widely used to provide high-resolution images from the surface of biological samples. However, samples need to be dehydrated and coated with conductive materials for SEM imaging. Besides, immobilizing non-adherent cells during processing and analysis is challenging and requires complex fixation protocols. In this work, we developed a novel dielectrophoresis based microfluidic platform for interfacing non-adherent cells with high-resolution SEM at low vacuum mode. The system enables rapid immobilization and dehydration of samples without deposition of chemical residues over the cell surface. Moreover, it enables the on-chip chemical stimulation and fixation of immobilized cells with minimum dislodgement. These advantages were demonstrated for comparing the morphological changes of non-budding and budding yeast cells following Lyticase treatment. PMID:25089528

  8. The theory and practice of high resolution scanning electron microscopy

    SciTech Connect

    Joy, D.C. Oak Ridge National Lab., TN )

    1990-01-01

    Recent advances in instrumentation have produced the first commercial examples of what can justifiably be called High Resolution Scanning Electron Microscopes. The key components of such instruments are a cold field emission gun, a small-gap immersion probe-forming lens, and a clean dry-pumped vacuum. The performance of these microscopes is characterized by several major features including a spatial resolution, in secondary electron mode on solid specimens, which can exceed 1nm on a routine basis; an incident probe current density of the order of 10{sup 6} amps/cm{sup 2}; and the ability to maintain these levels of performance over an accelerating voltage range of from 1 to 30keV. This combination of high resolution, high probe current, low contamination and flexible electron-optical conditions provides many new opportunitites for the application of the SEM to materials science, physics, and the life sciences. 27 refs., 14 figs.

  9. High-Resolution, Wide-Field-of-View Scanning Telescope

    NASA Technical Reports Server (NTRS)

    Sepulveda, Cesar; Wilson, Robert; Seshadri, Suresh

    2007-01-01

    A proposed telescope would afford high resolution over a narrow field of view (<0.10 ) while scanning over a total field of view nominally 16 wide without need to slew the entire massive telescope structure. The telescope design enables resolution of a 1-m-wide object in a 50- km-wide area of the surface of the Earth as part of a 200-km-wide area field of view monitored from an orbit at an altitude of 700 km. The conceptual design of this telescope could also be adapted to other applications both terrestrial and extraterrestrial in which there are requirements for telescopes that afford both wide- and narrow-field capabilities. In the proposed telescope, the scanning would be effected according to a principle similar to that of the Arecibo radio telescope, in which the primary mirror is stationary with respect to the ground and a receiver is moved across the focal surface of the primary mirror. The proposed telescope would comprise (1) a large spherical primary mirror that would afford high resolution over a narrow field of view and (2) a small displaceable optical relay segment that would be pivoted about the center of an aperture stop to effect the required scanning (see figure). Taken together, both comprise a scanning narrow-angle telescope that does not require slewing the telescope structure. In normal operation, the massive telescope structure would stare at a fixed location on the ground. The inner moveable relay optic would be pivoted to scan the narrower field of view over the wider one, making it possible to retain a fixed telescope orientation, while obtaining high-resolution images over multiple target areas during an interval of 3 to 4 minutes in the intended orbit. The pivoting relay segment of the narrow-angle telescope would include refractive and reflective optical elements, including two aspherical mirrors, to counteract the spherical aberration of the primary mirror. Overall, the combination of the primary mirror and the smaller relay optic

  10. CT scan (image)

    MedlinePlus

    CT stands for computerized tomography. In this procedure, a thin X-ray beam is rotated around the ... D image of a section through the body. CT scans are very detailed and provide excellent information ...

  11. High Resolution X-Ray Micro-CT of Ultra-Thin Wall Space Components

    NASA Technical Reports Server (NTRS)

    Roth, Don J.; Rauser, R. W.; Bowman, Randy R.; Bonacuse, Peter; Martin, Richard E.; Locci, I. E.; Kelley, M.

    2012-01-01

    A high resolution micro-CT system has been assembled and is being used to provide optimal characterization for ultra-thin wall space components. The Glenn Research Center NDE Sciences Team, using this CT system, has assumed the role of inspection vendor for the Advanced Stirling Convertor (ASC) project at NASA. This article will discuss many aspects of the development of the CT scanning for this type of component, including CT system overview; inspection requirements; process development, software utilized and developed to visualize, process, and analyze results; calibration sample development; results on actual samples; correlation with optical/SEM characterization; CT modeling; and development of automatic flaw recognition software. Keywords: Nondestructive Evaluation, NDE, Computed Tomography, Imaging, X-ray, Metallic Components, Thin Wall Inspection

  12. Low-dose high-resolution CT of lung parenchyma

    SciTech Connect

    Zwirewich, C.V.; Mayo, J.R.; Mueller, N.L. )

    1991-08-01

    To evaluate the efficacy of low-dose high-resolution computed tomography (HRCT) in the assessment of lung parenchyma, three observers reviewed the scans of 31 patients. The 1.5-mm-collimation, 2-second, 120-kVp scans were obtained at 20 and 200 mA at selected identical levels in the chest. The observers evaluated the visualization of normal pulmonary anatomy, various parenchymal abnormalities and their distribution, and artifacts. The low-dose and conventional scans were equivalent in the evaluation of vessels, lobar and segmental bronchi, and anatomy of secondary pulmonary lobules, and in characterizing the extent and distribution of reticulation, honeycomb cysts, and thickened interlobular septa. The low-dose technique failed to demonstrate ground-glass opacity in two of 10 cases (20%) and emphysema in one of nine cases (11%), in which they were evident but subtle on the high-dose scans. These differences were not statistically significant. Linear streak artifact was more prominent on images acquired with the low-dose technique, but the two techniques were judged equally diagnostic in 97% of cases. The authors conclude that HRCT images acquired at 20 mA yield anatomic information equivalent to that obtained with 200-mA scans in the majority of patients, without significant loss of spatial resolution or image degradation due to linear streak artifact.

  13. Stapes model using high-resolution μCT

    NASA Astrophysics Data System (ADS)

    Baek, Jong Dae; Puria, Sunil

    2008-02-01

    Understanding the biomechanics of the middle ear is important for surgical reconstructions. As the output of the middle ear, the stapes plays a key role in transferring acoustic vibrations to the cochlea. In order to develop anatomically-based mathematical models, which are needed to improve our understanding of stapes dynamics, detailed morphometry of the stapes is required. High-resolution micro-CT imaging techniques were used to generate three-dimensional reconstructions of cadaveric temporal bones from 5 species commonly used in experimental middle ear research: the chinchilla, human (relatively mid-frequency hearing limit), cat, guinea pig, and gerbil (relatively high-frequency hearing limit). From the standard discretizations of micro-CT images and corresponding 3-D volume reconstructions, the centers of mass, principle axes, stapes head areas and stapes footplate areas were calculated. Mechanical relationships were estimated between the capitulum area and the footplate area and inter-species comparisons were performed between the cross-sectional shapes of the anterior and posterior crura. Quantitative dynamic properties were estimated from the rigid body motion calculations. The parameters estimated in this study will be useful for building biocomputational models of the stapes for a variety of species.

  14. High-resolution fully vectorial scanning Kerr magnetometer.

    PubMed

    Flajšman, Lukáš; Urbánek, Michal; Křižáková, Viola; Vaňatka, Marek; Turčan, Igor; Šikola, Tomáš

    2016-05-01

    We report on the development of a high-resolution scanning magnetometer, which fully exploits the vectorial nature of the magneto-optical Kerr effect. The three-dimensional nature of magnetization is at the basis of many micromagnetic phenomena and from these data, we can fully characterize magnetization processes of nanostructures in static and dynamic regimes. Our scanning Kerr magnetometer uses a high numerical aperture microscope objective where the incident light beam can be deterministically deviated from the objective symmetry axis, therefore, both in-plane (via the longitudinal Kerr effect) and out-of-plane (via the polar Kerr effect) components of the magnetization vector may be detected. These components are then separated by exploiting the symmetries of the polar and longitudinal Kerr effects. From four consecutive measurements, we are able to directly obtain the three orthogonal components of the magnetization vector with a resolution of 600 nm. Performance of the apparatus is demonstrated by a measurement of 3D magnetization vector maps showing out-of-plane domains and in-plane domain walls in an yttrium-iron-garnet film and on a study of magnetization reversal in a 4-μm-wide magnetic disk. PMID:27250432

  15. High-resolution fully vectorial scanning Kerr magnetometer

    NASA Astrophysics Data System (ADS)

    Flajšman, Lukáš; Urbánek, Michal; Křižáková, Viola; VaÅatka, Marek; Turčan, Igor; Šikola, Tomáš

    2016-05-01

    We report on the development of a high-resolution scanning magnetometer, which fully exploits the vectorial nature of the magneto-optical Kerr effect. The three-dimensional nature of magnetization is at the basis of many micromagnetic phenomena and from these data, we can fully characterize magnetization processes of nanostructures in static and dynamic regimes. Our scanning Kerr magnetometer uses a high numerical aperture microscope objective where the incident light beam can be deterministically deviated from the objective symmetry axis, therefore, both in-plane (via the longitudinal Kerr effect) and out-of-plane (via the polar Kerr effect) components of the magnetization vector may be detected. These components are then separated by exploiting the symmetries of the polar and longitudinal Kerr effects. From four consecutive measurements, we are able to directly obtain the three orthogonal components of the magnetization vector with a resolution of 600 nm. Performance of the apparatus is demonstrated by a measurement of 3D magnetization vector maps showing out-of-plane domains and in-plane domain walls in an yttrium-iron-garnet film and on a study of magnetization reversal in a 4-μm-wide magnetic disk.

  16. [High resolution scanning electron microscopy of isolated outer hair cells].

    PubMed

    Koitschev, A; Müller, H

    1996-11-01

    Isolated hair cell preparations have gained wide acceptance as a model for studying physiological and molecular properties of the sensory cells involved in the hearing process. Ultrastructural details, such as stereocilia links, lateral membrane substructure or synaptic links are of crucial importance for normal sensory transduction. For this reason, we developed a high-resolution scanning electron microscopy (SEM) procedure to study the surface of isolated hair cells. Cells were mechanically and/or enzymatically separated, isolated and immobilized on cover slips by alcian blue and fixed by 2% glutardialdehyde or 1% OsO4. After dehydration, preparations were critical point-dried and sputter-coated with gold-palladium (2-4 nm). Up to 5 nm resolution was achieved. Optimal fixation kept the cells in their typical cylindrical forms. Preservation of the stereocilia and the apical plates of the outer hair cells depended strongly on the fixation process. Tip- and side-links were observed only sporadically because of the aggressive preparation procedure. The lateral plasma membranes of the cell bodies showed regular granular structures of 5-7 nm diameter at maximal magnification. The granular structure of the cell membrane seemed to correspond to putative transmembrane proteins believed to generate membrane-based motility. The remnants of the nerve endings and/or supporting cells usually covered the cell base. The preservation of the cells was better when enzymatic isolation was omitted. The technique used allowed for high resolution ultrastructural examination of isolated hair cells and, when combined with immunological labeling, may permit the identification of proteins at a molecular level. PMID:9064297

  17. Pediatric CT Scans

    Cancer.gov

    The Radiation Epidemiology Branch and collaborators have initiated a retrospective cohort study to evaluate the relationship between radiation exposure from CT scans conducted during childhood and adolescence and the subsequent development of cancer.

  18. Chest CT Scan

    MedlinePlus

    ... pictures to create a very detailed, three-dimensional (3D) model of organs. Sometimes, a substance called contrast dye is injected into a vein in your arm for the CT scan. This substance highlights areas in your chest, which ...

  19. High-Resolution Underwater Mapping Using Side-Scan Sonar

    PubMed Central

    2016-01-01

    The goal of this study is to generate high-resolution sea floor maps using a Side-Scan Sonar(SSS). This is achieved by explicitly taking into account the SSS operation as follows. First, the raw sensor data is corrected by means of a physics-based SSS model. Second, the data is projected to the sea-floor. The errors involved in this projection are thoroughfully analysed. Third, a probabilistic SSS model is defined and used to estimate the probability of each sea-floor region to be observed. This probabilistic information is then used to weight the contribution of each SSS measurement to the map. Because of these models, arbitrary map resolutions can be achieved, even beyond the sensor resolution. Finally, a geometric map building method is presented and combined with the probabilistic approach. The resulting map is composed of two layers. The echo intensity layer holds the most likely echo intensities at each point in the sea-floor. The probabilistic layer contains information about how confident can the user or the higher control layers be about the echo intensity layer data. Experimental results have been conducted in a large subsea region. PMID:26821379

  20. High-Resolution Underwater Mapping Using Side-Scan Sonar.

    PubMed

    Burguera, Antoni; Oliver, Gabriel

    2016-01-01

    The goal of this study is to generate high-resolution sea floor maps using a Side-Scan Sonar(SSS). This is achieved by explicitly taking into account the SSS operation as follows. First, the raw sensor data is corrected by means of a physics-based SSS model. Second, the data is projected to the sea-floor. The errors involved in this projection are thoroughfully analysed. Third, a probabilistic SSS model is defined and used to estimate the probability of each sea-floor region to be observed. This probabilistic information is then used to weight the contribution of each SSS measurement to the map. Because of these models, arbitrary map resolutions can be achieved, even beyond the sensor resolution. Finally, a geometric map building method is presented and combined with the probabilistic approach. The resulting map is composed of two layers. The echo intensity layer holds the most likely echo intensities at each point in the sea-floor. The probabilistic layer contains information about how confident can the user or the higher control layers be about the echo intensity layer data. Experimental results have been conducted in a large subsea region. PMID:26821379

  1. LandScan 2003 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2004-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  2. LandScan 2004 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2005-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  3. LandScan 2006 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2006-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  4. LandScan 2002 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2003-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  5. LandScan 2007 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2008-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  6. LandScan 2005 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2006-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  7. LandScan 2000 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2001-12-31

    The LandScan data set is a worldwide population database compiled on a 30" X 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. The LandScan data set was developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient populations at risk.

  8. LandScan 2010 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2010-07-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  9. LandScan 2011 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2012-11-19

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  10. LandScan 2009 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2009-07-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  11. LandScan 2008 High Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2009-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  12. Optical-CT scanning of polymer gels

    PubMed Central

    Oldham, M

    2006-01-01

    The application of optical-CT scanning to achieve accurate high-resolution 3D dosimetry is a subject of current interest. The purpose of this paper is to provide a brief overview of past research and achievements in optical-CT polymer gel dosimetry, and to review current issues and challenges. The origins of optical-CT imaging of light-scattering polymer gels are reviewed. Techniques to characterize and optimize optical-CT performance are presented. Particular attention is given to studies of artifacts in optical-CT imaging, an important area that has not been well studied to date. The technique of optical-CT simulation by Monte-Carlo modeling is introduced as a tool to explore such artifacts. New simulation studies are presented and compared with experimental data. PMID:17082823

  13. Mutation Scanning and Genotyping in Plants by High Resolution DNA Melting

    Technology Transfer Automated Retrieval System (TEKTRAN)

    High-resolution melting analysis after PCR allows closed-tube mutation scanning and genotyping without processing, labeled probes, real-time monitoring or allele-specific amplification. PCR is performed in the presence of the saturating dye, LCGreen® Plus, with subsequent high-resolution melting ana...

  14. High-resolution vehicle headlamps: technologies and scanning prototype

    NASA Astrophysics Data System (ADS)

    Kloppenburg, Gerolf; Wolf, Alexander; Lachmayer, Roland

    2016-04-01

    The introduction of adaptive front lighting systems for vehicles has increased road safety and drivers' comfort significantly within the last years. A next step in this development is the realization of higher resolution systems to further increase the functionality of vehicle headlamps toward fully adaptive front lighting systems. In this paper, we present a short overview on highly dynamic front lighting systems and the essential technologies for their realization. Different approaches are compared and evaluated regarding their applications for headlamp systems. As an example for on-road projection systems, a laser-based scanning unit is set up and evaluated.

  15. Nonlinear histogram binning for quantitative analysis of lung tissue fibrosis in high-resolution CT data

    NASA Astrophysics Data System (ADS)

    Zavaletta, Vanessa A.; Bartholmai, Brian J.; Robb, Richard A.

    2007-03-01

    Diffuse lung diseases, such as idiopathic pulmonary fibrosis (IPF), can be characterized and quantified by analysis of volumetric high resolution CT scans of the lungs. These data sets typically have dimensions of 512 x 512 x 400. It is too subjective and labor intensive for a radiologist to analyze each slice and quantify regional abnormalities manually. Thus, computer aided techniques are necessary, particularly texture analysis techniques which classify various lung tissue types. Second and higher order statistics which relate the spatial variation of the intensity values are good discriminatory features for various textures. The intensity values in lung CT scans range between [-1024, 1024]. Calculation of second order statistics on this range is too computationally intensive so the data is typically binned between 16 or 32 gray levels. There are more effective ways of binning the gray level range to improve classification. An optimal and very efficient way to nonlinearly bin the histogram is to use a dynamic programming algorithm. The objective of this paper is to show that nonlinear binning using dynamic programming is computationally efficient and improves the discriminatory power of the second and higher order statistics for more accurate quantification of diffuse lung disease.

  16. High resolution, high bandwidth global shutter CMOS area scan sensors

    NASA Astrophysics Data System (ADS)

    Faramarzpour, Naser; Sonder, Matthias; Li, Binqiao

    2013-10-01

    Global shuttering, sometimes also known as electronic shuttering, enables the use of CMOS sensors in a vast range of applications. Teledyne DALSA Global shutter sensors are able to integrate light synchronously across millions of pixels with microsecond accuracy. Teledyne DALSA offers 5 transistor global shutter pixels in variety of resolutions, pitches and noise and full-well combinations. One of the recent generations of these pixels is implemented in 12 mega pixel area scan device at 6 um pitch and that images up to 70 frames per second with 58 dB dynamic range. These square pixels include microlens and optional color filters. These sensors also offer exposure control, anti-blooming and high dynamic range operation by introduction of a drain and a PPD reset gate to the pixel. The state of the art sense node design of Teledyne DALSA's 5T pixel offers exceptional shutter rejection ratio. The architecture is consistent with the requirements to use stitching to achieve very large area scan devices. Parallel or serial digital output is provided on these sensors using on-chip, column-wise analog to digital converters. Flexible ADC bit depth combined with windowing (adjustable region of interest, ROI) allows these sensors to run with variety of resolution/bandwidth combinations. The low power, state of the art LVDS I/O technology allows for overall power consumptions of less than 2W at full performance conditions.

  17. Detecting metastasis of gastric carcinoma using high-resolution micro-CT system: in vivo small animal study

    NASA Astrophysics Data System (ADS)

    Liu, Junting; Tian, Jie; Liang, Jimin; Li, Xiangsi; Yang, Xiang; Chen, Xiaofeng; Chen, Yi; Zhou, Yuanfang; Wang, Xiaorui

    2011-03-01

    Immunocytochemical and immunofluorescence staining are used for identifying the characteristics of metastasis in traditional ways. Micro-computed tomography (micro-CT) is a useful tool for monitoring and longitudinal imaging of tumor in small animal in vivo. In present study, we evaluated the feasibility of the detection for metastasis of gastric carcinoma by high-resolution micro-CT system with omnipaque accumulative enhancement method in the organs. Firstly, a high-resolution micro-CT ZKKS-MCT-sharp micro-CT was developed by our research group and Guangzhou Zhongke Kaisheng Medical Technology Co., Ltd. Secondly, several gastric carcinoma models were established through inoculating 2x106 BGC-823 gastric carcinoma cells subcutaneously. Thirdly, micro-CT scanning was performed after accumulative enhancement method of intraperitoneal injection of omnipaque contrast agent containing 360 mg iodine with a concentration of 350 mg I/ml. Finally, we obtained high-resolution anatomical information of the metastasis in vivo in a BALB/c NuNu nude mouse, the 3D tumor architecture is revealed in exquisite detail at about 35 μm spatial resolution. In addition, the accurate shape and volume of the micrometastasis as small as 0.78 mm3 can be calculated with our software. Overall, our data suggest that this imaging approach and system could be used to enhance the understanding of tumor proliferation, metastasis and could be the basis for evaluating anti-tumor therapies.

  18. High-resolution three-dimensional visualization of the rat spinal cord microvasculature by synchrotron radiation micro-CT

    SciTech Connect

    Hu, Jianzhong; Cao, Yong; Wu, Tianding; Li, Dongzhe; Lu, Hongbin

    2014-10-15

    Purpose: Understanding the three-dimensional (3D) morphology of the spinal cord microvasculature has been limited by the lack of an effective high-resolution imaging technique. In this study, synchrotron radiation microcomputed tomography (SRµCT), a novel imaging technique based on absorption imaging, was evaluated with regard to the detection of the 3D morphology of the rat spinal cord microvasculature. Methods: Ten Sprague-Dawley rats were used in this ex vivo study. After contrast agent perfusion, their spinal cords were isolated and scanned using conventional x-rays, conventional micro-CT (CµCT), and SRµCT. Results: Based on contrast agent perfusion, the microvasculature of the rat spinal cord was clearly visualized for the first time ex vivo in 3D by means of SRµCT scanning. Compared to conventional imaging techniques, SRµCT achieved higher resolution 3D vascular imaging, with the smallest vessel that could be distinguished approximately 7.4 μm in diameter. Additionally, a 3D pseudocolored image of the spinal cord microvasculature was generated in a single session of SRµCT imaging, which was conducive to detailed observation of the vessel morphology. Conclusions: The results of this study indicated that SRµCT scanning could provide higher resolution images of the vascular network of the spinal cord. This modality also has the potential to serve as a powerful imaging tool for the investigation of morphology changes in the 3D angioarchitecture of the neurovasculature in preclinical research.

  19. User Friendly Processing of Sediment CT Data: Software and Application in High Resolution Non-Destructive Sediment Core Data Sets

    NASA Astrophysics Data System (ADS)

    Reilly, B. T.; Stoner, J. S.; Wiest, J.; Abbott, M. B.; Francus, P.; Lapointe, F.

    2015-12-01

    Computed Tomography (CT) of sediment cores allow for high resolution images, three dimensional volumes, and down core profiles, generated through the attenuation of X-rays as a function of density and atomic number. When using a medical CT-Scanner, these quantitative data are stored in pixels using the Hounsfield scale, which are relative to the attenuation of X-rays in water and air at standard temperature and pressure. Here we present MATLAB based software specifically designed for sedimentary applications with a user friendly graphical interface to process DICOM files and stitch overlapping CT scans. For visualization, the software allows easy generation of core slice images with grayscale and false color relative to a user defined Hounsfield number range. For comparison to other high resolution non-destructive methods, down core Hounsfield number profiles are extracted using a method robust to coring imperfections, like deformation, bowing, gaps, and gas expansion. We demonstrate the usefulness of this technique with lacustrine sediment cores from the Western United States and Canadian High Arctic, including Fish Lake, Oregon, and Sawtooth Lake, Ellesmere Island. These sites represent two different depositional environments and provide examples for a variety of common coring defects and lithologies. The Hounsfield profiles and images can be used in combination with other high resolution data sets, including sediment magnetic parameters, XRF core scans and many other types of data, to provide unique insights into how lithology influences paleoenvironmental and paleomagnetic records and their interpretations.

  20. 3D segmentation of non-isolated pulmonary nodules in high resolution CT images

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangwei; McLennan, Geoffrey; Hoffman, Eric A.; Sonka, Milan

    2005-04-01

    The purpose of this study is to develop a computer-aided diagnosis (CAD) system to segment small size non-isolated pulmonary nodules in high resolution helical CT scans. A new automated method of segmenting juxtapleural nodules was proposed, in which a quadric surface fitting procedure was used to create a boundary between a juxtapleural nodule and its neighboring pleural surface. Experiments on some real CT nodule data showed that this method was able to yield results that reflect the local shape of the pleural surface. Additionally, a scheme based on parametrically deformable geometric model was developed to deal with the problem of segmenting nodules attached to vessels. A vessel segment connected to a nodule was modeled using superquadrics with parametric deformations. The boundary between a vascularized nodule and the attached vessels can be recovered by finding the deformed superquadrics which approximates the vessels. Gradient descent scheme was utilized to optimize the parameters of the superquadrics. Simple experiments on synthetic data showed this scheme is promising.

  1. Computer Aided Evaluation of Ankylosing Spondylitis Using High-Resolution CT

    PubMed Central

    Yao, Jianhua; Ward, Michael M.; Yao, Lawrence; Summers, Ronald M.

    2009-01-01

    Ankylosing Spondylitis is a disease characterized by abnormal bone structures (syndesmophytes) growing at intervertebral disk spaces. Because this growth is so slow as to be undetectable on plain radiographs taken over years, it is desirable to resort to computerized techniques to complement qualitative human judgment with precise quantitative measures. We developed an algorithm with minimal user intervention that provides such measures using high-resolution computed tomography (CT) images. To the best of our knowledge it is the first time that determination of the disease’s status is attempted by direct measurement of the syndesmophytes. The first part of our algorithm segments the whole vertebral body using a 3-D multiscale cascade of successive level sets. The second part extracts the continuous ridgeline of the vertebral body where syndesmophytes are located. For that we designed a novel level set implementation capable of evolving on the isosurface of an object represented by a triangular mesh using curvature features. The third part of the algorithm segments the syndesmophytes from the vertebral body using local cutting planes and quantitates them. We present experimental work done with 10 patients from each of which we processed five vertebrae. The results of our algorithm were validated by comparison with a semi-quantitative evaluation made by a medical expert who visually inspected the CT scans. Correlation between the two evaluations was found to be 0.936 (p < 10−18). PMID:18779065

  2. Reduction of ring artefacts in high resolution micro-CT reconstructions.

    PubMed

    Sijbers, Jan; Postnov, Andrei

    2004-07-21

    High resolution micro-CT images are often corrupted by ring artefacts, prohibiting quantitative analysis and hampering post processing. Removing or at least significantly reducing such artefacts is indispensable. However, since micro-CT systems are pushed to the extremes in the quest for the ultimate spatial resolution, ring artefacts can hardly be avoided. Moreover, as opposed to clinical CT systems, conventional correction schemes such as flat-field correction do not lead to satisfactory results. Therefore, in this note a simple but efficient and fast post processing method is proposed that effectively reduces ring artefacts in reconstructed micro-CT images. PMID:15357205

  3. NOTE: Reduction of ring artefacts in high resolution micro-CT reconstructions

    NASA Astrophysics Data System (ADS)

    Sijbers, Jan; Postnov, Andrei

    2004-07-01

    High resolution micro-CT images are often corrupted by ring artefacts, prohibiting quantitative analysis and hampering post processing. Removing or at least significantly reducing such artefacts is indispensable. However, since micro-CT systems are pushed to the extremes in the quest for the ultimate spatial resolution, ring artefacts can hardly be avoided. Moreover, as opposed to clinical CT systems, conventional correction schemes such as flat-field correction do not lead to satisfactory results. Therefore, in this note a simple but efficient and fast post processing method is proposed that effectively reduces ring artefacts in reconstructed mgr-CT images.

  4. High-resolution 3D micro-CT imaging of breast microcalcifications: a preliminary analysis

    PubMed Central

    2014-01-01

    Background Detection of microcalcifications on mammograms indicates the presence of breast lesion, and the shapes of the microcalcifications as seen by conventional mammography correlates with the probability of malignancy. This preliminary study evaluated the 3D shape of breast microcalcifications using micro-computed tomography (micro-CT) and compared the findings with those obtained using anatomopathological analysis. Methods The study analyzed breast biopsy samples from 11 women with findings of suspicious microcalcifications on routine mammograms. The samples were imaged using a micro-CT (SkyScan 1076) at a resolution of 35 μm. Images were reconstructed using filtered back-projection and analyzed in 3D using surface rendering. The samples were subsequently analyzed by the pathology service. Reconstructed 3D images were compared with the corresponding histological slices. Results Anatomopathological analysis showed that 5 of 11 patients had ductal breast carcinoma in situ. One patient was diagnosed with invasive ductal carcinoma. Individual object analysis was performed on 597 microcalcifications. Malignant microcalcifications tended to be thinner and to have a smaller volume and surface area, while their surface area-to-volume ratio was greater than that of benign microcalcifications. The structure model index values were the same for malignant and benign microcalcifications. Conclusions This is the first study to use micro-CT for quantitative 3D analysis of microcalcifications. This high-resolution imaging technique will be valuable for gaining a greater understanding of the morphologic characteristics of malignant and benign microcalcifications. The presence of many small microcalcifications can be an indication of malignancy. For the larger microcalcifications, 3D parameters confirmed the more irregular shape of malignant microcalcifications. PMID:24393444

  5. Imaging of pore networks and related interfaces in soil systems by using high resolution X-ray micro-CT

    NASA Astrophysics Data System (ADS)

    Zacher, Gerhard; Eickhorst, Thilo; Schmidt, Hannes; Halisch, Matthias

    2016-04-01

    Today's high-resolution X-ray CT with its powerful tubes and great detail detectability lends itself naturally to geological and pedological applications. Those include the non-destructive interior examination and textural analysis of rock and soil samples and their permeability and porosity - to name only a few. Especially spatial distribution and geometry of pores, mineral phases and fractures are important for the evaluation of hydrologic and aeration properties in soils as well as for root development in the soil matrix. The possibility to visualize a whole soil aggregate or root tissue in a non-destructive way is undoubtedly the most valuable feature of this type of analysis and is a new area for routine application of high resolution X-ray micro-CT. The paper outlines recent developments in hard- and software requirements for high resolution CT. It highlights several pedological applications which were performed with the phoenix nanotom m, the first 180 kV nanofocus CT system tailored specifically for extremely high-resolution scans of variable sized samples with voxel-resolutions down to < 300 nm. In addition very good contrast resolution can be obtained as well which is necessary to distinguish biogenic material in soil aggregates amongst others. We will address visualization and quantification of porous networks in 3D in different environmental samples ranging from clastic sedimentary rock to soil cores and individual soil aggregates. As several processes and habitat functions are related to various pore sizes imaging of the intact soil matrix will be presented on different scales of interest - from the mm-scale representing the connectivity of macro-pores down to the micro-scale representing the space of microbial habitats. Therefore, soils were impregnated with resin and scanned via X-ray CT. Scans at higher resolution were obtained from sub-volumes cut from the entire resin impregnated block and from crop roots surrounded by rhizosphere soil. Within the

  6. Knee CT scan

    MedlinePlus

    CAT scan - knee; Computed axial tomography scan - knee; Computed tomography scan - knee ... Saunders; 2015:chap 93. Shaw AS, Prokop M. Computed tomography. In: Adam A, Dixon AK, Gillard JH, Schaefer- ...

  7. Near-real-time mosaics from high-resolution side-scan sonar

    USGS Publications Warehouse

    Danforth, William W.; O'Brien, Thomas F.; Schwab, W.C.

    1991-01-01

    High-resolution side-scan sonar has proven to be a very effective tool for stuyding and understanding the surficial geology of the seafloor. Since the mid-1970s, the US Geological Survey has used high-resolution side-scan sonar systems for mapping various areas of the continental shelf. However, two problems typically encountered included the short range and the high sampling rate of high-resolution side-scan sonar systems and the acquisition and real-time processing of the enormous volume of sonar data generated by high-resolution suystems. These problems were addressed and overcome in August 1989 when the USGS conducted a side-scan sonar and bottom sampling survey of a 1000-sq-km section of the continental shelf in the Gulf of Farallones located offshore of San Francisco. The primary goal of this survey was to map an area of critical interest for studying continental shelf sediment dynamics. This survey provided an opportunity to test an image processing scheme that enabled production of a side-scan sonar hard-copy mosaic during the cruise in near real-time.

  8. A complete CAD system for pulmonary nodule detection in high resolution CT images

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangwei; McLennan, Geoffrey; Hoffman, Eric A.; Sonka, Milan

    2005-04-01

    The purpose of this study is to develop a computer-aided diagnosis (CAD) system to detect small-sized (from 2mm to 10mm) pulmonary nodules in high resolution helical CT scans. A new CAD system is proposed to locate both juxtapleural nodules and non-pleural nodules. Isotropic resampling and lung segmentation are performed as preprocessing steps. Morphological closing was utilized to smooth the lung contours to include the indented possible juxtapleural locations, thresholding and 3D component analysis were used to obtain 3D volumetric nodule candidates; furthermore, gray level and geometric features were extracted, and analyzed using linear discriminant analysis (LDA) classifier. Leave one case out method was used to evaluate the LDA. To deal with non-pleural nodules, a discrete-time cellular neural network (DTCNN) based on local shape features was developed. This scheme employed the local shape property to perform voxel classification. The shape index feature successfully captured the local shape difference between nodules and non-nodules, especially vessels. To tailor it for lung nodule detection, this DTCNN was trained using genetic algorithms (GAs) to derive the shape index variation pattern of nodules. Nonoverlapping training and testing sets were utilized in the non-pleural nodule detection. 19 clinical thoracic CT cases involving a total of 4838 sectional images were used in this work. The juxtapleural nodule detection method was able to obtain sensitivity 81.25% with an average of 8.29 FPs per case. The non-pleural nodule finding scheme attained sensitivity of 83.9% with an average 3.47 FPs/case. Combining the two subsystems together, an overall performance of 82.98% sensitivity with 11.76 FPs/case can be obtained.

  9. Thoracic spine CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. Once you are inside the scanner, the machine's x-ray beam rotates around you. (Modern "spiral" scanners can perform the exam without stopping.) A computer ...

  10. Head CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. While inside the scanner, the machine's x-ray beam rotates around you. ... breathing during the test, you should notify the scanner operator immediately. Scanners come with an intercom and ...

  11. LandScan 2012 High Resolution Global Population DataSet

    Energy Science and Technology Software Center (ESTSC)

    2013-09-17

    The LandScan data set is a worldwide population database compiled on a 30"x20" latitude/longitude grid. Census counts at sub-national level were apportioned to each grid cell based on likelihood coefficients, which are based on land cover, slope, road proximity, high-resolution imagery, and other data sets.

  12. LandScan 2014 High-Resolution Global Population Data Set

    SciTech Connect

    2015-01-01

    The LandScan data set is a worldwide population database compiled on a 30" X 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on land cover, slope, road proximity, high-resolution imagery, and other data sets. The LandScan data set was developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient populations at risk.

  13. Pelvic CT scan

    MedlinePlus

    ... that slides into the center of the CT scanner. Once you are inside the scanner, the machine's x-ray beam rotates around you. ... weight limit. Too much weight can damage the scanner's working parts. You will be asked to remove ...

  14. High resolution multidetector CT aided tissue analysis and quantification of lung fibrosis

    NASA Astrophysics Data System (ADS)

    Zavaletta, Vanessa A.; Karwoski, Ronald A.; Bartholmai, Brian; Robb, Richard A.

    2006-03-01

    Idiopathic pulmonary fibrosis (IPF, also known as Idiopathic Usual Interstitial Pneumontis, pathologically) is a progressive diffuse lung disease which has a median survival rate of less than four years with a prevalence of 15-20/100,000 in the United States. Global function changes are measured by pulmonary function tests and the diagnosis and extent of pulmonary structural changes are typically assessed by acquiring two-dimensional high resolution CT (HRCT) images. The acquisition and analysis of volumetric high resolution Multi-Detector CT (MDCT) images with nearly isotropic pixels offers the potential to measure both lung function and structure. This paper presents a new approach to three dimensional lung image analysis and classification of normal and abnormal structures in lungs with IPF.

  15. Precise 3D dimensional metrology using high-resolution x-ray computed tomography (μCT)

    NASA Astrophysics Data System (ADS)

    Brunke, Oliver; Santillan, Javier; Suppes, Alexander

    2010-09-01

    measurement and the CT method of measurement within the same CT data set. A comparison of these results to the data obtained by means of CT shows that state of the art high resolution CT can provide measurement accuracy on the order of established coordinate measurement techniques.

  16. Image-Based Motion Compensation for High-Resolution Extremities Cone-Beam CT

    PubMed Central

    Sisniega, A.; Stayman, J. W.; Cao, Q.; Yorkston, J.; Siewerdsen, J. H.; Zbijewski, W.

    2016-01-01

    Purpose Cone-beam CT (CBCT) of the extremities provides high spatial resolution, but its quantitative accuracy may be challenged by involuntary sub-mm patient motion that cannot be eliminated with simple means of external immobilization. We investigate a two-step iterative motion compensation based on a multi-component metric of image sharpness. Methods Motion is considered with respect to locally rigid motion within a particular region of interest, and the method supports application to multiple locally rigid regions. Motion is estimated by maximizing a cost function with three components: a gradient metric encouraging image sharpness, an entropy term that favors high contrast and penalizes streaks, and a penalty term encouraging smooth motion. Motion compensation involved initial coarse estimation of gross motion followed by estimation of fine-scale displacements using high resolution reconstructions. The method was evaluated in simulations with synthetic motion (1–4 mm) applied to a wrist volume obtained on a CMOS-based CBCT testbench. Structural similarity index (SSIM) quantified the agreement between motion-compensated and static data. The algorithm was also tested on a motion contaminated patient scan from dedicated extremities CBCT. Results Excellent correction was achieved for the investigated range of displacements, indicated by good visual agreement with the static data. 10–15% improvement in SSIM was attained for 2–4 mm motions. The compensation was robust against increasing motion (4% decrease in SSIM across the investigated range, compared to 14% with no compensation). Consistent performance was achieved across a range of noise levels. Significant mitigation of artifacts was shown in patient data. Conclusion The results indicate feasibility of image-based motion correction in extremities CBCT without the need for a priori motion models, external trackers, or fiducials. PMID:27346909

  17. Image-based motion compensation for high-resolution extremities cone-beam CT

    NASA Astrophysics Data System (ADS)

    Sisniega, A.; Stayman, J. W.; Cao, Q.; Yorkston, J.; Siewerdsen, J. H.; Zbijewski, W.

    2016-03-01

    Purpose: Cone-beam CT (CBCT) of the extremities provides high spatial resolution, but its quantitative accuracy may be challenged by involuntary sub-mm patient motion that cannot be eliminated with simple means of external immobilization. We investigate a two-step iterative motion compensation based on a multi-component metric of image sharpness. Methods: Motion is considered with respect to locally rigid motion within a particular region of interest, and the method supports application to multiple locally rigid regions. Motion is estimated by maximizing a cost function with three components: a gradient metric encouraging image sharpness, an entropy term that favors high contrast and penalizes streaks, and a penalty term encouraging smooth motion. Motion compensation involved initial coarse estimation of gross motion followed by estimation of fine-scale displacements using high resolution reconstructions. The method was evaluated in simulations with synthetic motion (1-4 mm) applied to a wrist volume obtained on a CMOS-based CBCT testbench. Structural similarity index (SSIM) quantified the agreement between motion-compensated and static data. The algorithm was also tested on a motion contaminated patient scan from dedicated extremities CBCT. Results: Excellent correction was achieved for the investigated range of displacements, indicated by good visual agreement with the static data. 10-15% improvement in SSIM was attained for 2-4 mm motions. The compensation was robust against increasing motion (4% decrease in SSIM across the investigated range, compared to 14% with no compensation). Consistent performance was achieved across a range of noise levels. Significant mitigation of artifacts was shown in patient data. Conclusion: The results indicate feasibility of image-based motion correction in extremities CBCT without the need for a priori motion models, external trackers, or fiducials.

  18. Nano-CT Scanning

    NASA Astrophysics Data System (ADS)

    Masschaele, B.

    Tomography is a non-destructive research technique which allows investigating the internal structure of objects in 3D . The "centre for X-ray tomography (UGCT)" of the Ghent University has developed a modular X-ray micro/nanoCT scanner which is used for multi-disciplinary research. In this paper we give an overview of the different components of the UGCT scanner with special attention to the X-ray imaging detectors. Also the software tools for data reconstruction and analysis and some obtained results are discussed.

  19. Children, CT Scan and Radiation

    PubMed Central

    Bajoghli, Morteza; Bajoghli, Farshad; Tayari, Nazila; Rouzbahani, Reza

    2010-01-01

    Children are more sensitive to radiation than adults. Computerized tomography (CT) consists of 25 % of all medical imaging. It was estimated that more than 2% of all carcinomas in the USA are due to CT scans. There is an ongoing focus on the reduction of CT scan radiation dose. Awareness about risk-benefits of CT has increased. Reduction of radiological exam is an important issue because the accumulation effects of radiation can be hazardous. In addition, proper protocol should be followed for diagnostic procedures of ionization radiation and computerized tomography. Effective radiation dose should range from 0.8 to 10.5 millisievert. The same protocol should be followed in different hospitals as well. Basic principles of radiation protection should be monitored. As much as possible, both technician and radiologist must be present during computerized tomography for children, and MRI and ultrasound should be replaced if possible. PMID:21566776

  20. Fabrication of [001]-oriented tungsten tips for high resolution scanning tunneling microscopy

    PubMed Central

    Chaika, A. N.; Orlova, N. N.; Semenov, V. N.; Postnova, E. Yu.; Krasnikov, S. A.; Lazarev, M. G.; Chekmazov, S. V.; Aristov, V. Yu.; Glebovsky, V. G.; Bozhko, S. I.; Shvets, I. V.

    2014-01-01

    The structure of the [001]-oriented single crystalline tungsten probes sharpened in ultra-high vacuum using electron beam heating and ion sputtering has been studied using scanning and transmission electron microscopy. The electron microscopy data prove reproducible fabrication of the single-apex tips with nanoscale pyramids grained by the {011} planes at the apexes. These sharp, [001]-oriented tungsten tips have been successfully utilized in high resolution scanning tunneling microscopy imaging of HOPG(0001), SiC(001) and graphene/SiC(001) surfaces. The electron microscopy characterization performed before and after the high resolution STM experiments provides direct correlation between the tip structure and picoscale spatial resolution achieved in the experiments. PMID:24434734

  1. Varied-space grazing incidence gratings in high resolution scanning spectrometers

    SciTech Connect

    Hettrick, M.C.; Underwood, J.H.

    1986-10-01

    We discuss the dominant geometrical aberrations of a grazing incidence reflection grating and new techniques which can be used to reduce or eliminate them. Convergent beam geometries and the aberration correction possible with varied groove spacings are each found to improve the spectral resolution and speed of grazing incidence gratings. In combination, these two techniques can result in a high resolution (lambda/..delta..lambda > 10/sup 4/) monochromator or scanning spectrometer with a simple rotational motion for scanning wavelength or selecting the spectral band. 21 refs., 4 figs.

  2. Application of high resolution synchrotron micro-CT radiation in dental implant osseointegration.

    PubMed

    Neldam, Camilla Albeck; Lauridsen, Torsten; Rack, Alexander; Lefolii, Tore Tranberg; Jørgensen, Niklas Rye; Feidenhans'l, Robert; Pinholt, Else Marie

    2015-06-01

    The purpose of this study was to describe a refined method using high-resolution synchrotron radiation microtomography (SRmicro-CT) to evaluate osseointegration and peri-implant bone volume fraction after titanium dental implant insertion. SRmicro-CT is considered gold standard evaluating bone microarchitecture. Its high resolution, high contrast, and excellent high signal-to-noise-ratio all contribute to the highest spatial resolutions achievable today. Using SRmicro-CT at a voxel size of 5 μm in an experimental goat mandible model, the peri-implant bone volume fraction was found to quickly increase to 50% as the radial distance from the implant surface increased, and levelled out to approximately 80% at a distance of 400 μm. This method has been successful in depicting the bone and cavities in three dimensions thereby enabling us to give a more precise answer to the fraction of the bone-to-implant contact compared to previous methods. PMID:25957106

  3. Force scanning: A rapid, high-resolution approach for spatial mechanical property mapping

    PubMed Central

    Darling, E M

    2011-01-01

    Atomic force microscopy (AFM) can be used to co-localize mechanical properties and topographical features through property mapping techniques. The most common approach for testing biological materials at the micro-and nano-scales is force mapping, which involves taking individual force curves at discrete sites across a region of interest. Limitations of force mapping include long testing times and low resolution. While newer AFM methodologies, like modulated scanning and torsional oscillation, circumvent this problem, their adoption for biological materials has been limited. This could be due to their need for specialized software algorithms and/or hardware. The objective of this study is to develop a novel force scanning technique using AFM to rapidly capture high-resolution topographical images of soft biological materials while simultaneously quantifying their mechanical properties. Force scanning is a straight-forward methodology applicable to a wide range of materials and testing environments, requiring no special modification to standard AFMs. Essentially, if a contact mode image can be acquired, then force scanning can be used to produce a spatial modulus map. The current study first validates this technique using agarose gels, comparing results to the standard force mapping approach. Biologically relevant demonstrations are then presented for high-resolution modulus mapping of individual cells, cell-cell interfaces, and articular cartilage tissue. PMID:21411911

  4. An improved method for the removal of ring artifacts in high resolution CT imaging

    NASA Astrophysics Data System (ADS)

    Rashid, Sabrina; Lee, Soo Yeol; Hasan, Md Kamrul

    2012-12-01

    In high resolution computed tomography (CT) using flat panel detectors, imperfect or defected detector elements cause stripe artifacts in sinogram which results in concentric ring artifacts in the image. Such ring artifacts obscure image details in the regions of interest of the image. In this article, novel techniques are proposed for the detection, classification, and correction of ring artifacts in the sinogram domain. The proposed method is suitable for multislice CT with parallel or fan beam geometry. It can also be employed for ring artifact removal in 3D cone beam volume CT by adopting a sinogram by sinogram processing technique. The detection algorithm is based on applying data driven thresholds on the mean curve and difference curve of the sinogram. The ring artifacts are classified into three types and a separate correction algorithm is used for each class. The performance of the proposed techniques is evaluated on a number of real micro-CT images. Experimental results corroborate that the proposed algorithm can remove ring artifacts from micro-CT images more effectively as compared to other recently reported techniques in the literature.

  5. A high-resolution imaging technique using a whole-body, research photon counting detector CT system

    NASA Astrophysics Data System (ADS)

    Leng, S.; Yu, Z.; Halaweish, A.; Kappler, S.; Hahn, K.; Henning, A.; Li, Z.; Lane, J.; Levin, D. L.; Jorgensen, S.; Ritman, E.; McCollough, C.

    2016-03-01

    A high-resolution (HR) data collection mode has been introduced to a whole-body, research photon-counting-detector CT system installed in our laboratory. In this mode, 64 rows of 0.45 mm x 0.45 mm detector pixels were used, which corresponded to a pixel size of 0.25 mm x 0.25 mm at the iso-center. Spatial resolution of this HR mode was quantified by measuring the MTF from a scan of a 50 micron wire phantom. An anthropomorphic lung phantom, cadaveric swine lung, temporal bone and heart specimens were scanned using the HR mode, and image quality was subjectively assessed by two experienced radiologists. High spatial resolution of the HR mode was evidenced by the MTF measurement, with 15 lp/cm and 20 lp/cm at 10% and 2% modulation. Images from anthropomorphic phantom and cadaveric specimens showed clear delineation of small structures, such as lung vessels, lung nodules, temporal bone structures, and coronary arteries. Temporal bone images showed critical anatomy (i.e. stapes superstructure) that was clearly visible in the PCD system. These results demonstrated the potential application of this imaging mode in lung, temporal bone, and vascular imaging. Other clinical applications that require high spatial resolution, such as musculoskeletal imaging, may also benefit from this high resolution mode.

  6. A High-Resolution Imaging Technique using a Whole-body, Research Photon Counting Detector CT System

    PubMed Central

    Leng, S.; Yu, Z.; Halaweish, A.; Kappler, S.; Hahn, K.; Henning, A.; Li, Z.; Lane, J.; Levin, D. L.; Jorgensen, S.; Ritman, E.; McCollough, C.

    2016-01-01

    A high-resolution (HR) data collection mode has been introduced to the whole-body, research photon-counting-detector CT system installed in our laboratory. In this mode, 64 rows of 0.45 mm × 0.45 mm detectors pixels were used, which corresponded to a pixel size of 0.225 mm × 0.225 mm at the iso-center. Spatial resolution of this HR mode was quantified by measuring the MTF from a scan of a 50 micron wire phantom. An anthropomorphic lung phantom, cadaveric swine lung, temporal bone and heart specimens were scanned using the HR mode, and image quality was subjectively assessed by two experienced radiologists. Comparison of the HR mode images against their energy integrating system (EID) equivalents using comb filters was also performed. High spatial resolution of the HR mode was evidenced by the MTF measurement, with 15 lp/cm and 20 lp/cm at 10% and 2% MTF. Images from anthropomorphic phantom and cadaveric specimens showed clear delineation of small structures, such as lung vessels, lung nodules, temporal bone structures, and coronary arteries. Temporal bone images showed critical anatomy (i.e. stapes superstructure) that was clearly visible in the PCD system but hardly visible with the EID system. These results demonstrated the potential application of this imaging mode in lung, temporal bone, and vascular imaging. Other clinical applications that require high spatial resolution, such as musculoskeletal imaging, may also benefit from this high resolution mode. PMID:27330238

  7. High-resolution 3D OCT imaging with a MEMS scanning endoscope

    NASA Astrophysics Data System (ADS)

    Fan, Li S.; Piyawattanametha, Wibool; Wu, Ming C.; Aguirre, Aaron D.; Herz, Paul R.; Chen, Yu; Fujimoto, James G.

    2005-01-01

    Three-dimensional imaging is achieved by optical coherence tomography (OCT) integrated with a two-axis MEMS scanner to enable noninvasive volume imaging of biological tissues. The longitudinal scan is obtained by optical coherence interferometry. The transverse scan is obtained by tilting the two-axis MEMS mirror to scan the optical beam across the target. High-resolution OCT imaging has enabled in vivo observation of tissue architectural layers and differentiation of normal from tumor lesions within the human gastrointestinal tract. MEMS scanner based catheters with distal beam scanning can image with higher speed, precision, and repeatability than conventional linear scanning catheters. In this work, a 1-mm diameter MEMS scanning mirror with collimator and focusing optics is integrated into a compact 5-mm diameter package that is compatible with limited space in the endoscope. A large fill factor mirror provides high aperture over large scan angle and frequencies of hundreds of Hz in both axes. Using a broadband femtosecond laser light source, high axial image resolution of ~5 um is achieved at 1.06 um wavelength. Transverse resolution of ~ 12-um is demonstrated for cross-sectional image with the endoscope.

  8. Virtual histology by means of high-resolution X-ray CT.

    PubMed

    Cnudde, V; Masschaele, B; De Cock, H E V; Olstad, K; Vlaminck, L; Vlassenbroeck, J; Dierick, M; Witte, Y D; Van Hoorebeke, L; Jacobs, P

    2008-12-01

    Micro-CT is a non-destructive technique for 3D tomographic investigation of an object. A 3D representation of the internal structure is calculated based on a series of X-ray radiographs taken from different angles. The spatial resolution of current laboratory-used micro-CT systems has come down over the last years from a few tens of microns to a few microns. This opens the possibility to perform histological investigations in 3D on a virtual representation of a sample, referred to as virtual 3D histology. The advantage of micro-CT based virtual histology is the immediate and automated 3D visualization of the sample without prior slicing, sample preparation like decalcification, photographing and aligning. This not only permits a drastic reduction in preparation time but also offers the possibility to easily investigate objects that are difficult to slice. This article presents results that were obtained on punch biopsies of horse skin, (dental) alveolus of ponies and chondro-osseous samples from the tarsus of foals studied with the new high resolution micro-CT set-up (HRXCT) at the Ghent University (Belgium) (http://www.ugct.ugent.be). This state-of-the-art set-up provides a 1 micron resolution and is therefore ideally suited for a direct comparison with standard light microscopy-based histology. PMID:19094024

  9. High-resolution imaging of kidney vascular corrosion casts with Nano-CT.

    PubMed

    Wagner, Roger; Van Loo, Denis; Hossler, Fred; Czymmek, Kirk; Pauwels, Elin; Van Hoorebeke, Luc

    2011-04-01

    A vascular corrosion cast of an entire mouse kidney was scanned with a modular multiresolution X-ray nanotomography system. Using an isotropic voxel pitch of 0.5 μm, capillary systems such as the vasa recta, peritubular capillaries and glomeruli were clearly resolved. This represents a considerable improvement over corrosion casts scanned with microcomputed tomography systems. The resolving power of this system was clearly demonstrated by the unique observation of a dense, subcapsular mat of capillaries enveloping the entire outer surface of the cortical region. Resolution of glomerular capillaries was comparable to similar models derived from laser scanning confocal microscopy. The high-resolution, large field of view and the three-dimensional nature of the resulting data opens new possibilities for the use of corrosion casting in research. PMID:21122193

  10. Automatic tissue classification for high-resolution breast CT images based on bilateral filtering

    NASA Astrophysics Data System (ADS)

    Yang, Xiaofeng; Sechopoulos, Ioannis; Fei, Baowei

    2011-03-01

    Breast tissue classification can provide quantitative measurements of breast composition, density and tissue distribution for diagnosis and identification of high-risk patients. In this study, we present an automatic classification method to classify high-resolution dedicated breast CT images. The breast is classified into skin, fat and glandular tissue. First, we use a multiscale bilateral filter to reduce noise and at the same time keep edges on the images. As skin and glandular tissue have similar CT values in breast CT images, we use morphologic operations to get the mask of the skin based on information of its position. Second, we use a modified fuzzy C-mean classification method twice, one for the skin and the other for the fatty and glandular tissue. We compared our classified results with manually segmentation results and used Dice overlap ratios to evaluate our classification method. We also tested our method using added noise in the images. The overlap ratios for glandular tissue were above 94.7% for data from five patients. Evaluation results showed that our method is robust and accurate.

  11. High-resolution CT analysis of facial struts in trauma: 1. Normal anatomy

    SciTech Connect

    Gentry, L.R.; Manor, W.F.; Turski, P.A.; Strother, C.M.

    1983-03-01

    The recent availability of high-spatial-resolution thin-section computed tomography (CT), capable of accurately depicting the thin body septa of the facial skeleton, has expanded the role that diagnostic radiology can play in the evaluation of the patient with facial trauma. A detailed knowledge of the normal CT anatomy of the face, however, is essential to optimally utilize this modality. The normal anatomy of the face was investigated in six cadavers using thin-section (1.5 mm) high-resolution CT. A systematic method of analysis that can facilitate evaluation of the face is presented. The face is conceptualized as three groups of interconnected osseous struts or buttresses that are oriented in the horizontal, sagittal, and coronal planes. Each group of struts is closely related to specific soft-tissue structures that are susceptible to injury. Sequential evaluation of each strut and its associated soft tissue assures a comprehensive evaluation of the face. While both axial and coronal sections are of value in some circumstances, the coronal ones are most helpful in accurately depicting the structures of the face that are most likely to be injured in trauma.

  12. High-resolution and high-speed CT in industry and research

    NASA Astrophysics Data System (ADS)

    Zabler, S.; Fella, C.; Dietrich, A.; Nachtrab, F.; Salamon, Michael; Voland, V.; Ebensperger, T.; Oeckl, S.; Hanke, R.; Uhlmann, N.

    2012-10-01

    The application of industrial CT covers many orders of magnitude of object sizes, ranging from freight containers (few meters) down to liquid foams (i.e. for food industry) or even parts of insects which are only several hundreds of micrometers in size. Similarly, the specifications for acquisition speed extend over some orders of magnitude, from hours to sub-second CT. We present the current technology in terms of X-ray sources and detectors, along with numerous applications from industry and materials research: e.g. industrial high-speed CT of car pistons, in situ micro-CT of milk foam decay at micrometer spatial resolution and 8 s scan time, as well as ex situ scans of tensile tested Nickel-alloys. The Fraunhofer Development Center X-ray Technology (Fürth, Germany) and the Chair of X-ray Microscopy (University Würzburg, Germany) are currently working on extending the technological limits, demonstrated, e,g. by the development of advanced X-ray detectors or a new inhouse CT system which comprises a high-brilliance liquid metal jet anode.

  13. High-resolution atmospheric water vapor measurements with a scanning differential absorption lidar

    NASA Astrophysics Data System (ADS)

    Späth, F.; Behrendt, A.; Muppa, S. K.; Metzendorf, S.; Riede, A.; Wulfmeyer, V.

    2014-11-01

    The scanning differential absorption lidar (DIAL) of the University of Hohenheim (UHOH) is presented. The UHOH DIAL is equipped with an injection-seeded frequency-stabilized high-power Ti:sapphire laser operated at 818 nm with a repetition rate of 250 Hz. A scanning transceiver unit with a 80 cm primary mirror receives the atmospheric backscatter signals. The system is capable of water vapor measurements with temporal resolutions of a few seconds and a range resolution between 30 and 300 m at daytime. It allows to investigate surface-vegetation-atmosphere exchange processes with high resolution. In this paper, we present the design of the instrument and illustrate its performance with recent water vapor measurements taken in Stuttgart-Hohenheim and in the frame of the HD(CP)2 Observational Prototype Experiment (HOPE). HOPE was located near research center Jülich, in western Germany, in spring 2013 as part of the project "High Definition of Clouds and Precipitation for advancing Climate Prediction" (HD(CP)2). Scanning measurements reveal the 3-dimensional structures of the water vapor field. The influence of uncertainties within the calculation of the absorption cross-section at wavelengths around 818 nm for the WV retrieval is discussed. Radiosonde intercomparisons show a very small bias between the instruments of only (-0.04 ± 0.11) g m-3 or (-1.0 ± 2.3) % in the height range of 0.5 to 3 km.

  14. Synchronous scanning of reference mirror and objective lens for high-resolution full-field interferometry

    NASA Astrophysics Data System (ADS)

    Kashiwagi, Ken; Kasuya, Yosuke; Kojima, Shuto; Kurokawa, Takashi

    2015-03-01

    We realized a long-scanning-range and high-resolution interferometry in a time-domain full-field microscopic scheme by adopting a simple configuration. A reference mirror was synchronously scanned with an objective lens, which was installed in a common path, to prevent lateral resolution degradation due to defocus at the mirror. High axial resolution was obtained using a broadband supercontinuum (SC) generated by a 1.55 µm pump. The SC was generated by propagating a femtosecond pulse at 1.55 µm through a highly nonlinear dispersion shifted fiber with a small dispersion slope. We designed and constructed an interferometer carefully to utilize the entire bandwidth. The broad bandwidth of the interferometer achieved an axial resolution of 2.50 µm in air. The synchronous scanning maintained a lateral resolution longer than 1 mm. The system successfully yielded a cross-sectional image of two layers of scotch tape along the 400-µm-depth and 90-nm-step surface profiles.

  15. High-Resolution CT Imaging of Single Breast Cancer Microcalcifications In Vivo

    PubMed Central

    Inoue, Kazumasa; Liu, Fangbing; Hoppin, Jack; Lunsford, Elaine P.; Lackas, Christian; Hesterman, Jacob; Lenkinski, Robert E.; Fujii, Hirofumi; Frangioni, John V.

    2010-01-01

    Microcalcification is a hallmark of breast cancer and a key diagnostic feature for mammography. We recently described the first robust animal model of breast cancer microcalcification. In this study, we hypothesized that high-resolution computed tomography (CT) could potentially detect the genesis of a single microcalcification in vivo and quantify its growth over time. Using a commercial CT scanner, we systematically optimized acquisition and reconstruction parameters. Two ray-tracing image reconstruction algorithms were tested, a voxel-driven “fast” cone beam algorithm (FCBA) and a detector-driven “exact” cone beam algorithm (ECBA). By optimizing acquisition and reconstruction parameters, we were able to achieve a resolution of 104 µm full-width at half maximum (FWHM). At an optimal detector sampling frequency, ECBA provided a 28 µm (21%) FWHM improvement in resolution over FCBA. In vitro, we were able to image a single 300 µm by 100 µm hydroxyapatite crystal. In a syngeneic rat model of breast cancer, we were able to detect the genesis of a single microcalcification in vivo and follow its growth longitudinally over weeks. Taken together, this study provides an in vivo “gold standard” for the development of calcification-specific contrast agents and a model system for studying the mechanism of breast cancer microcalcification. PMID:21504703

  16. High Resolution Airborne Laser Scanning and Hyperspectral Imaging with a Small Uav Platform

    NASA Astrophysics Data System (ADS)

    Gallay, Michal; Eck, Christoph; Zgraggen, Carlo; Kaňuk, Ján; Dvorný, Eduard

    2016-06-01

    The capabilities of unmanned airborne systems (UAS) have become diverse with the recent development of lightweight remote sensing instruments. In this paper, we demonstrate our custom integration of the state-of-the-art technologies within an unmanned aerial platform capable of high-resolution and high-accuracy laser scanning, hyperspectral imaging, and photographic imaging. The technological solution comprises the latest development of a completely autonomous, unmanned helicopter by Aeroscout, the Scout B1-100 UAV helicopter. The helicopter is powered by a gasoline two-stroke engine and it allows for integrating 18 kg of a customized payload unit. The whole system is modular providing flexibility of payload options, which comprises the main advantage of the UAS. The UAS integrates two kinds of payloads which can be altered. Both payloads integrate a GPS/IMU with a dual GPS antenna configuration provided by OXTS for accurate navigation and position measurements during the data acquisition. The first payload comprises a VUX-1 laser scanner by RIEGL and a Sony A6000 E-Mount photo camera. The second payload for hyperspectral scanning integrates a push-broom imager AISA KESTREL 10 by SPECIM. The UAS was designed for research of various aspects of landscape dynamics (landslides, erosion, flooding, or phenology) in high spectral and spatial resolution.

  17. Analysis of high quality monatomic chromium films used in biological high resolution scanning electron microscopy.

    PubMed

    Apkarian, R P

    1994-01-01

    During the recent employment of field emission (FE) in-lens scanning electron microscopes (SEMs), refractory metal deposition technology has co-evolved to provide enhanced contrast of 1-10 nm hydrocarbon based biological structures imaged at high magnifications (> 200,000 times). Pioneer development employing the Penning sputter system in a high vacuum chamber proved that imaging of chromium (Cr) coated biological specimens contained enriched secondary electron (SE)-(I) contrasts. Single nanometer size fibrillar and particulate ectodomains within the context of complex biological membranes were accurately imaged without significant enlargement using the high resolution SE-I mode (HRSEM). This paper reports the transmission electron microscopy (TEM) testing of ultrathin (0.5-2.0 nm) Cr films deposited by planar magnetron sputter coating (PMSC). Essential parameters necessary to reproduce quality sputtered films of refractory metals used in HRSEM studies were described for the vacuum system and target operation conditions (current, voltage, and target distance). HRSEM imaging of biological specimens is presented to assess contrast attained from ultrathin fine grain Cr films deposited by PMSC. High magnification images were recorded to illustrate high quality contrasts attainable by HRSEM at low (1-5 kV) and high (10-30 kV) voltages. Dispersed molecules on formvar coated grids were sputter coated with a 1 nm thick Cr film before employing scanning transmission (STEM)/SEM modes of the FESEM to establish non-decorative image accuracy in the transmitted electron mode. PMID:7701300

  18. Large-Eddy Simulation of Inhomogeneous Canopy Flows Using High Resolution Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Schlegel, Fabian; Stiller, Jörg; Bienert, Anne; Maas, Hans-Gerd; Queck, Ronald; Bernhofer, Christian

    2012-02-01

    The effect of sub-tree forest heterogeneity in the flow past a clearing is investigated by means of large-eddy simulation (LES). For this purpose, a detailed representation of the canopy has been acquired by terrestrial laser scanning for a patch of approximately 190 m length in the field site "Tharandter Wald", near the city of Dresden, Germany. The scanning data are used to produce a high resolution plant area distribution (PAD) that is averaged over approximately one tree height (30 m) along the transverse direction, in order to simplify the LES study. Despite the smoothing involved with this procedure, the resulting two-dimensional PAD maintains a rich vertical and horizontal structure. For the LES study, the PAD is embedded in a larger domain covered with an idealized, horizontally homogeneous canopy. Simulations are performed for neutral conditions and compared to a LES with homogeneous PAD and recent field measurements. The results reveal a considerable influence of small-scale plant distribution on the mean velocity field as well as on turbulence data. Particularly near the edges of the clearing, where canopy structure is highly variable, usage of a realistic PAD appears to be crucial for capturing the local flow structure. Inside the forest, local variations in plant density induce a complex pattern of upward and downward motions, which remain visible in the mean flow and make it difficult to identify the "adjustment zone" behind the windward edge of the clearing.

  19. High-resolution raster scan optoacoustic mesoscopy of genetically modified drosophila pupae

    NASA Astrophysics Data System (ADS)

    Omar, Murad; Gateau, Jérôme; Ntziachristos, Vasilis

    2014-03-01

    Optoacoutic mesoscopy aims to bridge the gap between optoacoustic microscopy and optoacoustic tomography. We have developed a setup for optoacoustic mesoscopy where we use a high frequency, high numerical aperture spherically focused ultrasound transducer, with a wide bandwidth of 25-125 MHz. The excitation is performed using a diode laser capable of >500 μJ/pulse, 1.8ns pulse width, 1.4 kHz pulse repetition rate, at 515 nm. The system is capable to penetrate more than 5 mm with a resolution of 7 μm axially and 30 μm transversally. Using high-speed stages and scanning the transducer in a quasi-continuous mode, a field of view of 2×2 mm2 is scanned in less than 2 minutes. The system is suitable for imaging biological samples that have a diameter of 1-5 mm; zebrafish, drosophila melanogaster, and thin biological samples such as the mouse ear and mouse extremities. We have used our mesoscopic setup to generate 3- dimensional images of genetically modified drosophila fly, and drosophila pupae expressing GFP from the wings, high resolution images were generated in both cases, in the fly we can see the wings, the legs, the eyes, and the shape of the body. In the pupae the outline of the pupae, the spiracles at both ends and a strong signal corresponding to the location of the future wings are observed.

  20. Simultaneous high-resolution scanning Bragg contrast and ptychographic imaging of a single solar cell nanowire

    PubMed Central

    Wallentin, Jesper; Wilke, Robin N.; Osterhoff, Markus; Salditt, Tim

    2015-01-01

    Simultaneous scanning Bragg contrast and small-angle ptychographic imaging of a single solar cell nanowire are demonstrated, using a nanofocused hard X-ray beam and two detectors. The 2.5 µm-long nanowire consists of a single-crystal InP core of 190 nm diameter, coated with amorphous SiO2 and polycrystalline indium tin oxide. The nanowire was selected and aligned in real space using the small-angle scattering of the 140 × 210 nm X-ray beam. The orientation of the nanowire, as observed in small-angle scattering, was used to find the correct rotation for the Bragg condition. After alignment in real space and rotation, high-resolution (50 nm step) raster scans were performed to simultaneously measure the distribution of small-angle scattering and Bragg diffraction in the nanowire. Ptychographic reconstruction of the coherent small-angle scattering was used to achieve sub-beam spatial resolution. The small-angle scattering images, which are sensitive to the shape and the electron density of all parts of the nanowire, showed a homogeneous profile along the nanowire axis except at the thicker head region. In contrast, the scanning Bragg diffraction microscopy, which probes only the single-crystal InP core, revealed bending and crystalline inhomogeneity. Both systematic and non-systematic real-space movement of the nanowire were observed as it was rotated, which would have been difficult to reveal only from the Bragg scattering. These results demonstrate the advantages of simultaneously collecting and analyzing the small-angle scattering in Bragg diffraction experiments. PMID:26664342

  1. Morphological Changes Along a Dike Landside Slope Sampled by 4d High Resolution Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Herrero-Huertaa, Mónica; Lindenbergh, Roderik; Ponsioen, Luc; van Damme, Myron

    2016-06-01

    Emergence of light detection and ranging (LiDAR) technology provides new tools for geomorphologic studies improving spatial and temporal resolution of data sampling hydrogeological instability phenomena. Specifically, terrestrial laser scanning (TLS) collects high resolution 3D point clouds allowing more accurate monitoring of erosion rates and processes, and thus, quantify the geomorphologic change on vertical landforms like dike landside slopes. Even so, TLS captures observations rapidly and automatically but unselectively. In this research, we demonstrate the potential of TLS for morphological change detection, profile creation and time series analysis in an emergency simulation for characterizing and monitoring slope movements in a dike. The experiment was performed near Schellebelle (Belgium) in November 2015, using a Leica Scan Station C10. Wave overtopping and overflow over a dike were simulated whereby the loading conditions were incrementally increased and 14 successful scans were performed. The aim of the present study is to analyse short-term morphological dynamic processes and the spatial distribution of erosion and deposition areas along a dike landside slope. As a result, we are able to quantify the eroded material coming from the impact on the terrain induced by wave overtopping which caused the dike failure in a few minutes in normal storm scenarios (Q = 25 l/s/m) as 1.24 m3. As this shows that the amount of erosion is measurable using close range techniques; the amount and rate of erosion could be monitored to predict dike collapse in emergency situation. The results confirm the feasibility of the proposed methodology, providing scalability to a comprehensive analysis over a large extension of a dike (tens of meters).

  2. CT imaging of the internal human ear: Test of a high resolution scanner

    NASA Astrophysics Data System (ADS)

    Bettuzzi, M.; Brancaccio, R.; Morigi, M. P.; Gallo, A.; Strolin, S.; Casali, F.; Lamanna, Ernesto; Ariù, Marilù

    2011-08-01

    During the course of 2009, in the framework of a project supported by the National Institute of Nuclear Physics, a number of tests were carried out at the Department of Physics of the University of Bologna in order to achieve a good quality CT scan of the internal human ear. The work was carried out in collaboration with the local “S. Orsola” Hospital in Bologna and a company (CEFLA) already involved in the production and commercialization of a CT scanner dedicated to dentistry. A laboratory scanner with a simple concept detector (CCD camera-lens-mirror-scintillator) was used to see to what extent it was possible to enhance the quality of a conventional CT scanner when examining the internal human ear. To test the system, some conventional measurements were made, such as the spatial resolution calculation with the MTF and dynamic range evaluation. Different scintillators were compared to select the most suitable for the purpose. With 0.5 mm thick structured cesium iodide and a field of view of 120×120 mm2, a spatial resolution of 6.5l p/mm at 5% MTF was obtained. The CT of a pair of human head phantoms was performed at an energy of 120 kVp. The first phantom was a rough representation of the human head shape, with soft tissue made of coarse slabs of Lucite. Some inserts, like small aluminum cylinders and cubes, with 1 mm diameter drilled holes, were used to simulate the channels that one finds inside the human inner ear. The second phantom is a plastic PVC fused head with a real human cranium inside. The bones in the cranium are well conserved and the inner ear features, such as the cochlea and semicircular channels, are clearly detectable. After a number of CT tests we obtained good results as far as structural representation and channel detection are concerned. Some images of the 3D rendering of the CT volume are shown below. The doctors of the local hospital who followed our experimentation expressed their satisfaction. The CT was compared to a virtual

  3. Photoconductivity, High-resolution AFM, and Scanning Conductance Microscopy of Porphyrin Nanorods

    NASA Astrophysics Data System (ADS)

    Schwab, Alexander D.; Smith, Deirdre E.; Hone, James

    2005-03-01

    We have shown^1 that the diacid form of the porphyrin tetrakis(4-sulfonatophenyl) porphine (TPPS4) self assembles into nanorods with well-defined height and width. Upon illumination, their conductivity grows over hundreds of seconds. They also produce a zero-bias photocurrent with trainable polarity.^2 We present measurements as a function of illumination wavelength and intensity, which support a model of charge hopping along paths of previously photoionized porphyrin molecules. We also give results from Scanning Conductance Microscopy experiments; these are designed to clarify the role of the contacts in the DC measurements. Our high-resolution AFM images support the model of a hollow tube^3, which collapses on contact with the substrate. ^1A.D. Schwab et al., J. Phys. Chem. B 107, 11339 (2003). ^2A.D. Schwab et al., Nano Letters 4, 1261 (2004). ^3S.C.M. Gandini, E.L. Gelamo, R. Itri, and M. Tabak, Biophys. J. 85, 1259 (2003).

  4. High-resolution spin-polarized scanning electron microscopy (spin SEM).

    PubMed

    Kohashi, Teruo; Konoto, Makoto; Koike, Kazuyuki

    2010-01-01

    We have developed spin-polarized scanning electron microscopy (spin SEM) with a 5-nm resolution. The secondary electron optics is very important, as it needs to transfer a sufficient number of secondary electrons to the spin polarimeter, due to the low efficiency of the polarimeter. The optics was designed using a three-dimensional (3D) simulation program of the secondary electron trajectories, and it achieves highly efficient collection and transport of the secondary electrons even though the distance between the sample and the objective lens exit of the electron gun remains short. Moreover, the designed optics enables us to obtain clear SEM images in the spin SEM measurement and to precisely adjust the probe beam shape. These functions lead to images with high spatial resolution and sufficient signal-to-noise (S/N) ratios. This optics has been installed in an ultra-high vacuum (UHV) spin SEM chamber with a Schottky-type electron gun for the probe electron beam. We observed recorded bits on a perpendicular magnetic recording medium and visualized small irregularities in the bit shapes around the track edges and bit boundaries. The high resolution of 5 nm was demonstrated by observing the smallest domain composed by a single grain in the recording medium. PMID:19840986

  5. Magnetic lens apparatus for use in high-resolution scanning electron microscopes and lithographic processes

    DOEpatents

    Crewe, Albert V.

    2000-01-01

    Disclosed are lens apparatus in which a beam of charged particlesis brought to a focus by means of a magnetic field, the lens being situated behind the target position. In illustrative embodiments, a lens apparatus is employed in a scanning electron microscopeas the sole lens for high-resolution focusing of an electron beam, and in particular, an electron beam having an accelerating voltage of from about 10 to about 30,000 V. In one embodiment, the lens apparatus comprises an electrically-conducting coil arranged around the axis of the beam and a magnetic pole piece extending along the axis of the beam at least within the space surrounded by the coil. In other embodiments, the lens apparatus comprises a magnetic dipole or virtual magnetic monopole fabricated from a variety of materials, including permanent magnets, superconducting coils, and magnetizable spheres and needles contained within an energy-conducting coil. Multiple-array lens apparatus are also disclosed for simultaneous and/or consecutive imaging of multiple images on single or multiple specimens. The invention further provides apparatus, methods, and devices useful in focusing charged particle beams for lithographic processes.

  6. High-resolution adaptive optics scanning laser ophthalmoscope with dual deformable mirrors for large aberration correction

    SciTech Connect

    Chen, D; Jones, S M; Silva, D A; Olivier, S S

    2007-01-25

    Scanning laser ophthalmoscopes with adaptive optics (AOSLO) have been shown previously to provide a noninvasive, cellular-scale view of the living human retina. However, the clinical utility of these systems has been limited by the available deformable mirror technology. In this paper, we demonstrate that the use of dual deformable mirrors can effectively compensate large aberrations in the human retina, making the AOSLO system a viable, non-invasive, high-resolution imaging tool for clinical diagnostics. We used a bimorph deformable mirror to correct low-order aberrations with relatively large amplitudes. The bimorph mirror is manufactured by Aoptix, Inc. with 37 elements and 18 {micro}m stroke in a 10 mm aperture. We used a MEMS deformable mirror to correct high-order aberrations with lower amplitudes. The MEMS mirror is manufactured by Boston Micromachine, Inc with 144 elements and 1.5 {micro}m stroke in a 3 mm aperture. We have achieved near diffraction-limited retina images using the dual deformable mirrors to correct large aberrations up to {+-} 3D of defocus and {+-} 3D of cylindrical aberrations with test subjects. This increases the range of spectacle corrections by the AO systems by a factor of 10, which is crucial for use in the clinical environment. This ability for large phase compensation can eliminate accurate refractive error fitting for the patients, which greatly improves the system ease of use and efficiency in the clinical environment.

  7. Near-Field Scanning Optical Microscopy for High-Resolution Membrane Studies

    PubMed Central

    Huckabay, Heath A.; Armendariz, Kevin P.; Newhart, William H.; Wildgen, Sarah M.; Dunn, Robert C.

    2012-01-01

    The desire to directly probe biological structures on the length scales that they exist has driven the steady development of various high-resolution microscopy techniques. Among these, optical microscopy and, in particular, fluorescence-based approaches continue to occupy dominant roles in biological studies given their favorable attributes. Fluorescence microscopy is both sensitive and specific, is generally noninvasive toward biological samples, has excellent temporal resolution for dynamic studies, and is relatively inexpensive. Light-based microscopies can also exploit a myriad of contrast mechanisms based on spectroscopic signatures, energy transfer, polarization, and lifetimes to further enhance the specificity or information content of a measurement. Historically, however, spatial resolution has been limited to approximately half the wavelength due to the diffraction of light. Near-field scanning optical microscopy (NSOM) is one of several optical approaches currently being developed that combines the favorable attributes of fluorescence microscopy with superior spatial resolution. NSOM is particularly well suited for studies of both model and biological membranes and application to these systems is discussed. PMID:23086886

  8. High-resolution X-ray computed tomography scanning of primate copulatory plugs.

    PubMed

    Parga, Joyce A; Maga, Murat; Overdorff, Deborah J

    2006-04-01

    In this study, high-resolution computed tomography X-ray scanning was used to scan ring-tailed lemur (Lemur catta) copulatory plugs. This method produced accurate measures of plug volume and surface area, but was not useful for visualizing plug internal structure. Copulatory plug size was of interest because it may relate to male fertilization success. Copulatory plugs form from coagulated ejaculate, and are routinely displaced in this species by the penis of a subsequent mate during copulation (Parga [2003] Int. J. Primatol. 24:889-899). Because one potential function of these plugs may be to preclude or delay other males' successful insemination of females, we tested the hypothesis that larger plugs are more difficult for subsequent males to displace. Plugs were collected opportunistically upon displacement during data collection on L. catta mating behavior on St. Catherines Island, Georgia (USA) during two subsequent breeding seasons. Copulatory plugs exhibited a wide range of volumes: 1,758-5,013.6 mm3 (n = 9). Intraindividual differences in plug volume were sometimes greater than interindividual differences. Contrary to predictions, larger plugs were not more time-consuming for males to displace via penile intromission during copulation. Nor were plugs with longer vaginal residence times notably smaller than plugs with shorter residence times, as might be expected if plugs disintegrate while releasing sperm (Asdell [1946] Patterns of Mammalian Reproduction; Ithaca: Comstock). We found a significant inverse correlation between number of copulatory mounts leading to ejaculation and copulatory plug volume. This may indicate that if males are sufficiently sexually aroused to reach ejaculation in fewer mounts, they tend to produce ejaculates of greater volume. PMID:16345065

  9. High-resolution scanning electron microscopy of frozen-hydrated cells.

    PubMed

    Walther, P; Chen, Y; Pech, L L; Pawley, J B

    1992-11-01

    Cryo-fixed yeast Paramecia and sea urchin embryos were investigated with an in-lens type field-emission SEM using a cold stage. The goal was to further develop and investigate the processing of frozen samples for the low-temperature scanning electron microscope (LTSEM). Uncoated frozen-hydrated samples were imaged with the low-voltage backscattered electron signal (BSE). Resolution and contrast were sufficient to visualize cross-fractured membranes, nuclear pores and small vesicles in the cytoplasm. It is assumed that the resolution of this approach is limited by the extraction depth of the BSE which depends upon the accelerating voltage of the primary beam (V0). In this study, the lowest possible V0 was 2.6 kV because below this value the sensitivity of the BSE detector is insufficient. It is concluded that the resolution of the uncoated specimen could be improved if equipment were available for high-resolution BSE imaging at 0.5-2 kV. Higher resolution was obtained with platinum cryo-coated samples, on which intramembranous particles were easily imaged. These images even show the ring-like appearance of the hexagonally arranged intramembranous particles known from high-resolution replica studies. On fully hydrated samples at high magnification, the observation time for a particular area is limited by mass loss caused by electron irradiation. Other potential sources of artefacts are the deposition of water vapour contamination and shrinkage caused by the sublimation of ice. Imaging of partially dehydrated (partially freeze-dried) samples, e.g. high-pressure frozen Paramecium and sea urchin embryos, will probably become the main application in cell biology. In spite of possible shrinkage problems, this approach has a number of advantages compared with any other electron microscopy preparation method: no chemical fixation is necessary, eliminating this source of artefacts; due to partial removal of the water additional structures in the cytoplasm can be investigated

  10. Scanning magnetic tunnel junction (MTJ) microscopy: High-resolution magnetic imaging of geologic samples

    NASA Astrophysics Data System (ADS)

    Lascu, I.; Harrison, R. J.

    2014-12-01

    characterised by spatial heterogeneity. In addition, the high-resolution capability of the MTJ microscope makes it extremely useful for investigating sedimentary archives formed under low accumulation conditions (e.g., speleothems, stromatolites, Fe-Mn nodules) that hold a detectable environmental magnetic signal.

  11. Exploring crystallization kinetics in natural rhyolitic melts using high resolution CT imagery of spherulites

    NASA Astrophysics Data System (ADS)

    Clow, T. W.; Befus, K. S.; Gardner, J. E.

    2014-12-01

    Little of our understanding of crystallization kinetics has been directly derived from studies of natural samples. We examine crystallization of rhyolitic melts by quantifying spherulite sizes and number densities in obsidian collected from Yellowstone caldera using high-resolution x-ray computed tomography (CT) imagery. Spherulites are spherical to ellipsoidal masses of intergrown alkali feldspar and quartz in a radiating, fibrous structure. They are thought to form in response to relatively rapid crystallization of melt in response to large amounts of undercooling. Recent research using compositional gradients that form outside of spherulites has suggested that they nucleate at 700 to 500 ˚C and their growth slows exponentially until it eventually ceases at ~400 ˚C. By quantifying spherulite textures, and using those temperature constraints, we derive new kinetic information regarding crystallization in natural rhyolitic systems. We find that spherulites range from 0.2 to 12.3 mm in diameter, and are 0.004 to 49.5 mm3 in volume. Such values generate number densities of 70 to 185 spherulites cm-3. Histograms of size display positively skewed distributions indicating small spherulites are far more abundant than larger ones. Those distributions imply nucleation rates change as a function of temperature. At higher temperatures where the melt is undercooled by 400-500 ˚C, nucleation is rare and growth is favored. With decreasing temperature, nucleation rates increase rapidly until cold enough temperatures are reached that diffusion limits crystallization and causes it to cease (undercoolings of ~650 ˚C). Assuming a cooling rate for the host obsidian of 10-5 ˚C s-1, then overall spherulite nucleation rates are 0.01 to 0.03 spherulites cm-3 hour-1.

  12. Microstructure development in latex coatings: High-resolution cryo-scanning electron microscopy

    NASA Astrophysics Data System (ADS)

    Ge, Haiyan

    2005-07-01

    High-resolution cryogenic scanning electron microscopy (Cryo-SEM) was used to investigate microstructure development in drying latex coatings: from a colloidal stable suspension into a coherent strong film by drying. Useful sample preparation artifacts during the freeze-fracture, i.e., pullouts were documented and analyzed. Pullouts indicate both physical properties of latex particles and the drying stages in latex coatings. The mechanism of pullout formation was studied both theoretically and experimentally. Latex coatings must possess satisfactory freeze-thaw stability to avoid problems during transportation and storage in cold winter. The behavior of latex particles during freeze-thaw cycles was visualized by Cryo-SEM. The images indicated that high concentration of polymerizable surfactant in a latex suspension improved its freeze-thaw stability. In film formation, skinning was captured from edge in and top down in coatings of 80nm diameter styrene-butadiene latex particles with exceptional low Tg (-65°C). Effects on skinning of drying conditions and the way the latex was initially stabilized against flocculation were investigated. A skinned pocket was unexpectedly found in the coating. The cause of such a skin around the air bubble was explained by both simple models calculating the dissolution time and force analysis on the particles. The film formation processes in conventional and low volatile organic compound (VOC) latex coatings were compared by time-sectioning Cryo-SEM. Some low-VOC latex coatings were found to dry as fast as conventional ones without deteriorating final good film properties.

  13. Detection of Aspens Using High Resolution Aerial Laser Scanning Data and Digital Aerial Images

    PubMed Central

    Säynäjoki, Raita; Packalén, Petteri; Maltamo, Matti; Vehmas, Mikko; Eerikäinen, Kalle

    2008-01-01

    The aim was to use high resolution Aerial Laser Scanning (ALS) data and aerial images to detect European aspen (Populus tremula L.) from among other deciduous trees. The field data consisted of 14 sample plots of 30 m × 30 m size located in the Koli National Park in the North Karelia, Eastern Finland. A Canopy Height Model (CHM) was interpolated from the ALS data with a pulse density of 3.86/m2, low-pass filtered using Height-Based Filtering (HBF) and binarized to create the mask needed to separate the ground pixels from the canopy pixels within individual areas. Watershed segmentation was applied to the low-pass filtered CHM in order to create preliminary canopy segments, from which the non-canopy elements were extracted to obtain the final canopy segmentation, i.e. the ground mask was analysed against the canopy mask. A manual classification of aerial images was employed to separate the canopy segments of deciduous trees from those of coniferous trees. Finally, linear discriminant analysis was applied to the correctly classified canopy segments of deciduous trees to classify them into segments belonging to aspen and those belonging to other deciduous trees. The independent variables used in the classification were obtained from the first pulse ALS point data. The accuracy of discrimination between aspen and other deciduous trees was 78.6%. The independent variables in the classification function were the proportion of vegetation hits, the standard deviation of in pulse heights, accumulated intensity at the 90th percentile and the proportion of laser points reflected at the 60th height percentile. The accuracy of classification corresponded to the validation results of earlier ALS-based studies on the classification of individual deciduous trees to tree species.

  14. High-Resolution Scanning Tunneling Microscopy of Fully Hydrated Ripple-Phase Bilayers

    PubMed Central

    Woodward IV, J. T.; Zasadzinski, J. A.

    1997-01-01

    A modified freeze-fracture replication technique for use with the scanning tunneling microscope (STM) has provided a quantitative, high-resolution description of the waveform and amplitude of rippled bilayers in the Pβ, phase of dimyristoylphosphatidylcholine (DMPC) in excess water. The ripples are uniaxial and asymmetrical, with a temperature-dependent amplitude of 2.4 nm near the chain melting temperature that decreases to zero at the chain crystallization temperature. The wavelength of 11 nm does not change with temperature. The observed ripple shape and the temperature-induced structural changes are not predicted by any current theory. Calibration and reproducibility of the STM/replica technique were tested with replicas of well-characterized bilayers of cadmium arachidate on mica that provide regular 5.5-nm steps. STM images were analyzed using a cross-correlation averaging program to eliminate the effects of noise and the finite size and shapes of the metal grains that make up the replica. The correlation averaging allowed us to develop a composite ripple profile averaged over hundreds of individual ripples measured on different samples with different STM tips. The STM/replica technique avoids many of the previous artifacts of biological STM imaging and can be used to examine a variety of periodic hydrated lipid and protein samples at a lateral resolution of about 1 nm and a vertical resolution of about 0.3 nm. This resolution is superior to conventional and tapping mode AFM of soft biological materials; the technique is substrate-free, and the conductive and chemically uniform replicas make image interpretation simple and direct. ImagesFIGURE 1FIGURE 2FIGURE 3FIGURE 5 PMID:9017222

  15. Work-function measurement by high-resolution scanning Kelvin nanoprobe

    NASA Astrophysics Data System (ADS)

    Cheran, Larisa-Emilia; Johnstone, Sherri; Sadeghi, Saman; Thompson, Michael

    2007-03-01

    Nanoscience promises to transform today's world in the same way that integrated semiconductor devices transformed the world of electronics and computation. In the post-genomic era, the greatest challenge is to make connections between the structures and functions of biomolecules at the nanometre-scale level in order to underpin the understanding of larger scale systems in the fields of human biology and physiology. To achieve this, instruments with new capabilities need to be researched and developed, with particular emphasis on new levels of sensitivity, precision and resolution for biomolecular analysis. This paper describes an instrument able to analyse structures that range from tenths of a nanometre (proteins, DNA) to micron-scale structures (living cells), which can be investigated non-destructively in their normal state and subsequently in chemical- or biochemical-modified conditions. The high-resolution scanning Kelvin nanoprobe (SKN) measures the work-function changes at molecular level, instigated by local charge reconfiguration due to translational motion of mobile charges, dipolar relaxation of bound charges, interfacial polarization and structural and conformational modifications. In addition to detecting surface electrical properties, the instrument offers, in parallel, the surface topographic image, with nanometre resolution. The instrument can also be used to investigate subtle work function/topography variations which occur in, for example, corrosion, contamination, adsorption and desorption of molecules, crystallographic studies, mechanical stress studies, surface photovoltaic studies, material science, biocompatibility studies, microelectronic characterization in semiconductor technology, oxide and thin films, surface processing and treatments, surfaces and interfaces characterization. This paper presents the design and development of the instrument, the basic principles of the method and the challenges involved to achieve nanometric resolution

  16. High resolution micro-CT of low attenuating organic materials using large area photon-counting detector

    NASA Astrophysics Data System (ADS)

    Kumpová, I.; Vavřík, D.; Fíla, T.; Koudelka, P.; Jandejsek, I.; Jakůbek, J.; Kytýř, D.; Zlámal, P.; Vopálenský, M.; Gantar, A.

    2016-02-01

    To overcome certain limitations of contemporary materials used for bone tissue engineering, such as inflammatory response after implantation, a whole new class of materials based on polysaccharide compounds is being developed. Here, nanoparticulate bioactive glass reinforced gelan-gum (GG-BAG) has recently been proposed for the production of bone scaffolds. This material offers promising biocompatibility properties, including bioactivity and biodegradability, with the possibility of producing scaffolds with directly controlled microgeometry. However, to utilize such a scaffold with application-optimized properties, large sets of complex numerical simulations using the real microgeometry of the material have to be carried out during the development process. Because the GG-BAG is a material with intrinsically very low attenuation to X-rays, its radiographical imaging, including tomographical scanning and reconstructions, with resolution required by numerical simulations might be a very challenging task. In this paper, we present a study on X-ray imaging of GG-BAG samples. High-resolution volumetric images of investigated specimens were generated on the basis of micro-CT measurements using a large area flat-panel detector and a large area photon-counting detector. The photon-counting detector was composed of a 010× 1 matrix of Timepix edgeless silicon pixelated detectors with tiling based on overlaying rows (i.e. assembled so that no gap is present between individual rows of detectors). We compare the results from both detectors with the scanning electron microscopy on selected slices in transversal plane. It has been shown that the photon counting detector can provide approx. 3× better resolution of the details in low-attenuating materials than the integrating flat panel detectors. We demonstrate that employment of a large area photon counting detector is a good choice for imaging of low attenuating materials with the resolution sufficient for numerical simulations.

  17. Mapping the electrostatic force field of single molecules from high-resolution scanning probe images

    NASA Astrophysics Data System (ADS)

    Hapala, Prokop; Švec, Martin; Stetsovych, Oleksandr; van der Heijden, Nadine J.; Ondráček, Martin; van der Lit, Joost; Mutombo, Pingo; Swart, Ingmar; Jelínek, Pavel

    2016-05-01

    How electronic charge is distributed over a molecule determines to a large extent its chemical properties. Here, we demonstrate how the electrostatic force field, originating from the inhomogeneous charge distribution in a molecule, can be measured with submolecular resolution. We exploit the fact that distortions typically observed in high-resolution atomic force microscopy images are for a significant part caused by the electrostatic force acting between charges of the tip and the molecule of interest. By finding a geometrical transformation between two high-resolution AFM images acquired with two different tips, the electrostatic force field or potential over individual molecules and self-assemblies thereof can be reconstructed with submolecular resolution.

  18. High-resolution CT analysis of facial struts in trauma: 1. Osseous and soft-tissue complications

    SciTech Connect

    Gentry, L.R.; Manor, W.F.; Turski, P.A.; Strother, C.M.

    1983-03-01

    In six cadavers, high-resolution thin-section computed tomography (CT) was used to evaluate the sequelae of experimentally produced facial trauma. As confirmed by pluridirectional tomography, CT was an effective imaging method for the detection and classification of facial fractures. The ability of CT to simultaneously depict both osseous and soft-tissue structures expands the role that diagnostic radiology can play in the evaluation of the traumatized face. A method of evaluation is presented in which the face is geometrically conceptualized as a series of triplanar (horizontal, sagittal, and coronal) osseous struts. Sequential, systematic assessment of each strut for fracture and its adjacent soft tissue for injury can facilitate evaluation of the traumatized face. Using this approach the osseous and soft-tissue complications arising from experimentally produced trauma are reviewed and illustrated with CT.

  19. Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation.

    PubMed

    Sakhalkar, H S; Oldham, M

    2008-01-01

    This study introduces a charge coupled device (CCD) area detector based optical-computed tomography (optical-CT) scanner for comprehensive verification of radiation dose distributions recorded in nonscattering radiochromic dosimeters. Defining characteristics include: (i) a very fast scanning time of approximately 5 min to acquire a complete three-dimensional (3D) dataset, (ii) improved image formation through the use of custom telecentric optics, which ensures accurate projection images and minimizes artifacts from scattered and stray-light sources, and (iii) high resolution (potentially 50 microm) isotropic 3D dose readout. The performance of the CCD scanner for 3D dose readout was evaluated by comparison with independent 3D readout from the single laser beam OCTOPUS-scanner for the same PRESAGE dosimeters. The OCTOPUS scanner was considered the "gold standard" technique in light of prior studies demonstrating its accuracy. Additional comparisons were made against calculated dose distributions from the ECLIPSE treatment-planning system. Dose readout for the following treatments were investigated: (i) a single rectangular beam irradiation to investigate small field and very steep dose gradient dosimetry away from edge effects, (ii) a 2-field open beam parallel-opposed irradiation to investigate dosimetry along steep dose gradients, and (iii) a 7-field intensity modulated radiation therapy (IMRT) irradiation to investigate dosimetry for complex treatment delivery involving modulation of fluence and for dosimetry along moderate dose gradients. Dose profiles, dose-difference plots, and gamma maps were employed to evaluate quantitative estimates of agreement between independently measured and calculated dose distributions. Results indicated that dose readout from the CCD scanner was in agreement with independent gold-standard readout from the OCTOPUS-scanner as well as the calculated ECLIPSE dose distribution for all treatments, except in regions within a few

  20. Characterising the Geomorphology of Forested Floodplains Using High Resolution Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Sear, D. A.; Brasington, J.; Darby, S. E.

    2007-12-01

    Forested floodplain environments represent the undisturbed land cover of most temperate and tropical river systems, but they are under threat from human resource management (Hughes et al., 2005, FLOBAR II Project report). A scientific understanding of forest floodplain processes therefore has relevance to ecosystem conservation and restoration, and the interpretation of pre-historic river and floodplain evolution. Empirical research has highlighted how overbank flows are relatively shallow and strongly modified by floodplain topography and the presence of vegetation and organic debris on the woodland floor [Jeffries et al., 2003, Geomorphology, 51, 61-80; Millington and Sear, 2007, Earth. Surf. Proc. Landforms, 32, doi: 10.1002/esp.1552]. In such instances flow blockage and diversions are common, and there is the possibility of frequent switches from sub-critical to locally super-critical flow. Such conditions also favour turbulence generation, both by wakes and by shear. Consequently, the floodplain terrain (where we take 'terrain' to include the underlying topography, root structures, and organic debris) plays a key role in modulating the processes of erosion and sedimentation that underpin the physical habitat diversity and hydraulic characteristics of complex wooded floodplain surfaces. However, despite the importance of these issues, as yet there are no formal, quantitative, descriptions of the highly complex and spatially diverse micro- and meso-topography that appears to be characteristic of forested floodplain surfaces. To address this gap, we have undertaken detailed surveys on a small floodplain reach within the Highland Water Research Catchment (HWRC: see http://www.geog.soton.ac.uk/research/nfrc/default.asp), which is a UK national reference site for lowland floodplain forest streams. This involved the deployment of a Leica ScanStation terrestrial laser-scanner from 14 setups and ranges of less than 30 m to acquire an extremely high resolution, accurate

  1. Differentiation of the ILO boundary chest roentgenograph (0/1 to 1/0) in asbestosis by high-resolution computed tomography scan, alveolitis, and respiratory impairment.

    PubMed

    Harkin, T J; McGuinness, G; Goldring, R; Cohen, H; Parker, J E; Crane, M; Naidich, D P; Rom, W N

    1996-01-01

    High-resolution computed tomography (HRCT) scans have been advocated as providing greater sensitivity in detecting parenchymal opacities in asbestos-exposed individuals, especially in the presence of pleural fibrosis, and having excellent inter- and intraobserver reader interpretation. We compared the 1980 International Labor Organization (ILO) International Classification of the Radiographs of the Pneumoconioses for asbestosis with the high-resolution CT scan using a grid scoring system to better differentiate normal versus abnormal in the ILO boundary 0/1 to 1/0 chest roentgenograph. We studied 37 asbestos-exposed individuals using the ILO classification, HRCT grid scores, respiratory symptom questionnaires, pulmonary function tests, and bronchoalveolar lavage. We used Pearson correlation coefficients to evaluate the linear relationship between outcome variables and each roentgenographic method. The normal HRCT scan proved to be an excellent predictor of "normality," with pulmonary function values close to 100% for forced vital capacity (FVC), forced expiratory volume in 1 second (FEV1), total lung capacity (TLC), and carbon monoxide diffusing capacity (DLCO) and no increase in BAL inflammatory cells. Concordant HRCT/ILO abnormalities were associated with reduced FEV1/FVC ratio, reduced diffusing capacity, and alveolitis consistent with a definition of asbestosis. In our study, the ILO classification and HRCT grid scores were both excellent modalities for the assessment of asbestosis and its association with impaired physiology and alveolitis, with their combined use providing statistical associations with alveolitis and reduced diffusing capacity. PMID:8871331

  2. Mapping the electrostatic force field of single molecules from high-resolution scanning probe images

    PubMed Central

    Hapala, Prokop; Švec, Martin; Stetsovych, Oleksandr; van der Heijden, Nadine J.; Ondráček, Martin; van der Lit, Joost; Mutombo, Pingo; Swart, Ingmar; Jelínek, Pavel

    2016-01-01

    How electronic charge is distributed over a molecule determines to a large extent its chemical properties. Here, we demonstrate how the electrostatic force field, originating from the inhomogeneous charge distribution in a molecule, can be measured with submolecular resolution. We exploit the fact that distortions typically observed in high-resolution atomic force microscopy images are for a significant part caused by the electrostatic force acting between charges of the tip and the molecule of interest. By finding a geometrical transformation between two high-resolution AFM images acquired with two different tips, the electrostatic force field or potential over individual molecules and self-assemblies thereof can be reconstructed with submolecular resolution. PMID:27230940

  3. Wavelength scanning digital interference holography for high-resolution ophthalmic imaging

    NASA Astrophysics Data System (ADS)

    Potcoava, Mariana C.; Kim, M. K.; Kay, Christine N.

    2009-02-01

    An improved digital interference holography (DIH) technique suitable for fundus images is proposed. This technique incorporates a dispersion compensation algorithm to compensate for the unknown axial length of the eye. Using this instrument we acquired successfully tomographic fundus images in human eye with narrow axial resolution less than 5μm. The optic nerve head together with the surrounding retinal vasculature were constructed. We were able to quantify a depth of 84μm between the retinal fiber and the retinal pigmented epithelium layers. DIH provides high resolution 3D information which could potentially aid in guiding glaucoma diagnosis and treatment.

  4. Data-fusion of high resolution X-ray CT, SEM and EDS for 3D and pseudo-3D chemical and structural characterization of sandstone.

    PubMed

    De Boever, Wesley; Derluyn, Hannelore; Van Loo, Denis; Van Hoorebeke, Luc; Cnudde, Veerle

    2015-07-01

    When dealing with the characterization of the structure and composition of natural stones, problems of representativeness and choice of analysis technique almost always occur. Since feature-sizes are typically spread over the nanometer to centimeter range, there is never one single technique that allows a rapid and complete characterization. Over the last few decades, high resolution X-ray CT (μ-CT) has become an invaluable tool for the 3D characterization of many materials, including natural stones. This technique has many important advantages, but there are also some limitations, including a tradeoff between resolution and sample size and a lack of chemical information. For geologists, this chemical information is of importance for the determination of minerals inside samples. We suggest a workflow for the complete chemical and structural characterization of a representative volume of a heterogeneous geological material. This workflow consists of combining information derived from CT scans at different spatial resolutions with information from scanning electron microscopy and energy-dispersive X-ray spectroscopy. PMID:25939085

  5. Integration of Point Clouds from Terrestrial Laser Scanning and Image-Based Matching for Generating High-Resolution Orthoimages

    NASA Astrophysics Data System (ADS)

    Salach, A.; Markiewicza, J. S.; Zawieska, D.

    2016-06-01

    An orthoimage is one of the basic photogrammetric products used for architectural documentation of historical objects; recently, it has become a standard in such work. Considering the increasing popularity of photogrammetric techniques applied in the cultural heritage domain, this research examines the two most popular measuring technologies: terrestrial laser scanning, and automatic processing of digital photographs. The basic objective of the performed works presented in this paper was to optimize the quality of generated high-resolution orthoimages using integration of data acquired by a Z+F 5006 terrestrial laser scanner and a Canon EOS 5D Mark II digital camera. The subject was one of the walls of the "Blue Chamber" of the Museum of King Jan III's Palace at Wilanów (Warsaw, Poland). The high-resolution images resulting from integration of the point clouds acquired by the different methods were analysed in detail with respect to geometric and radiometric correctness.

  6. CT Scans - Multiple Languages: MedlinePlus

    MedlinePlus

    ... 繁體中文) French (français) Hindi (हिन्दी) Japanese (日本語) Korean (한국어) Russian (Русский) Somali (af Soomaali) Spanish (español) ... スキャン - 日本語 (Japanese) Bilingual PDF Health Information Translations Korean (한국어) CT (Computerized Tomography) Scan CT 스캔 (전산화 ...

  7. Ga-68-DOTATOC: Feasibility of high throughput screening by small animal PET using a clinical high-resolution PET/CT scanner

    NASA Astrophysics Data System (ADS)

    Hofmann, Michael; Weitzel, Thilo; Krause, Thomas

    2006-12-01

    As radio peptide tracers have been developed in recent years for the high sensitive detection of neuroendocrine tumors, still the broad application of other peptides to breast and prostate cancer is missing. A rapid screening of new peptides can, in theory, be based on in vivo screening in animals by PET/CT. To test this hypothesis and to asses the minimum screening time needed per animal, we used the application of Ga-68-DOTATOC PET/CT in rats as test system. The Ga-68-DOTATOC yields in a hot spot imaging with minimal background. To delineate liver and spleen, we performed PET/CT of 10 animals on a SIEMENS Biograph 16 LSO HIGHREZ after intravenous injection of 1.5 MBq Ga-68-DOTATOC per animal. Animals were mounted in an '18 slot' holding device and scanned for a single-bed position. The emission times for the PET scan was varied from 1 to 20 min. The images were assessed first for "PET only" and afterwards in PET/CT fusion mode. The detection of the two organs was good at emission times down to 1 min in PET/CT fusion mode. In the "PET only" scans, the liver was clearly to be identified down to 1 min emission in all animals. But the spleen could only be delineated only by 1 min of emission in the PET/CT-fusion mode. In conclusion the screening of "hot spot" enriching peptides is feasible. "PET only" is in terms of delineation of small organs by far inferior to PET/CT fusion. If animal tumors are above a diameter of 10 mm small, animal PET/CT using clinical high resolution scanners will enable rapid screening. Even the determination of bio-distributions becomes feasible by using list mode tools. The time for the whole survey of 18 animals including anesthesia, preparation and mounting was approximately 20 min. By use of several holding devices mounted simultaneously, a survey time of less than 1 h for 180 animals can be expected.

  8. LandScan 2001 High-Resolution Global Population Data Set

    Energy Science and Technology Software Center (ESTSC)

    2002-01-01

    The LandScan data set is a worldwide population database compiled on a 30" x 30" latitude/longitude grid. Census counts (at sub-national level) were apportioned to each grid cell based on likelihood coefficients, which are based on proximity to roads, slope, land cover, nighttime lights, and other data sets. LandScan 2001 has been developed as part of Oak Ridge National Laboratory (ORNL) Global Population Project for estimating ambient population risk.

  9. High resolution dual detector volume-of-interest cone beam breast CT - Demonstration with a bench top system

    SciTech Connect

    Shen Youtao; Yi Ying; Zhong Yuncheng; Lai Chaojen; Liu Xinming; You Zhicheng; Ge Shuaiping; Wang Tianpeng; Shaw, Chris C.

    2011-12-15

    Purpose: In this study, we used a small field high resolution detector in conjunction with a full field flat panel detector to implement and investigate the dual detector volume-of-interest (VOI) cone beam breast computed tomography (CBCT) technique on a bench-top system. The potential of using this technique to image small calcifications without increasing the overall dose to the breast was demonstrated. Significant reduction of scatter components in the high resolution projection image data of the VOI was also shown. Methods: With the regular flat panel based CBCT technique, exposures were made at 80 kVp to generate an air kerma of 6 mGys at the isocenter. With the dual detector VOI CBCT technique, a high resolution small field CMOS detector was used to scan a cylindrical VOI (2.5 cm in diameter and height, 4.5 cm off-center) with collimated x-rays at four times of regular exposure level. A flat panel detector was used for full field scan with low x-ray exposures at half of the regular exposure level. The low exposure full field image data were used to fill in the truncated space in the VOI scan data and generate a complete projection image set. The Feldkamp-Davis-Kress (FDK) filtered backprojection algorithm was used to reconstruct high resolution images for the VOI. Two scanning techniques, one breast centered and the other VOI centered, were implemented and investigated. Paraffin cylinders with embedded thin aluminum (Al) wires were imaged and used in conjunction with optically stimulated luminescence (OSL) dose measurements to demonstrate the ability of this technique to image small calcifications without increasing the mean glandular dose (MGD). Results: Using exposures that produce an air kerma of 6 mGys at the isocenter, the regular CBCT technique was able to resolve the cross-sections of Al wires as thin as 254 {mu}m in diameter in the phantom. For the specific VOI studied, by increasing the exposure level by a factor of 4 for the VOI scan and reducing

  10. High-resolution dichroic imaging of magnetic flux distributions in superconductors with scanning x-ray microscopy

    SciTech Connect

    Ruoß, S. Stahl, C.; Weigand, M.; Schütz, G.; Albrecht, J.

    2015-01-12

    The penetration of magnetic flux into high-temperature superconductors has been observed using a high-resolution technique based on x-ray magnetic circular dichroism. Superconductors coated with thin soft-magnetic layers are observed in a scanning x-ray microscope under the influence of external magnetic fields. Resulting electric currents in the superconductor create an inhomogeneous magnetic field distribution above the superconductor and lead to a local reorientation of the ferromagnetic layer. Measuring the local magnetization of the ferromagnet by x-ray absorption microscopy with circular-polarized radiation allows the analysis of the magnetic flux distribution in the superconductor with a spatial resolution on the nanoscale.

  11. High-Resolution Imaging of Proteins in Human Teeth by Scanning Probe Microscopy

    SciTech Connect

    Gruverman, A.; Wu, D.; Rodriguez, Brian J; Kalinin, Sergei V; Habelitz, S.

    2007-01-01

    High-resolution studies of dental tissues are of considerable interest for biomedical engineering and clinical applications. In this paper, we demonstrate the application of piezoresponse force microscopy (PFM) to nanoscale imaging of internal structure of human teeth by monitoring the local mechanical response to an electrical bias applied via a conductive tip. It is shown that PFM is capable of detecting dissimilar components of dental tissues, namely, proteins and calcified matrix, which have resembling morphology but different piezoelectric properties. It is demonstrated that collagen fibrils revealed in chemically treated intertubular dentin exhibit high piezoelectric activity and can be visualized in PFM with spatial resolution of 10 nm. Evidence of the presence of protein inclusions of 100-200 nm wide and several micrometers long in tooth enamel has been obtained. Furthermore, it is found that the peritubular dentin and intertubular dentin exhibit different piezoelectric behavior suggesting different concentration of collagen fibrils. The obtained results demonstrate a high potential of PFM in providing an additional insight into the structure of dental tissues. It is suggested that the PFM approach can be used to study the structure of a wide range of biological materials by monitoring their electromechanical behavior at the nanoscale.

  12. Method and apparatus for a high-resolution three dimensional confocal scanning transmission electron microscope

    DOEpatents

    de Jonge, Niels [Oak Ridge, TN

    2010-08-17

    A confocal scanning transmission electron microscope which includes an electron illumination device providing an incident electron beam propagating in a direction defining a propagation axis, and a precision specimen scanning stage positioned along the propagation axis and movable in at least one direction transverse to the propagation axis. The precision specimen scanning stage is configured for positioning a specimen relative to the incident electron beam. A projector lens receives a transmitted electron beam transmitted through at least part of the specimen and focuses this transmitted beam onto an image plane, where the transmitted beam results from the specimen being illuminated by the incident electron beam. A detection system is placed approximately in the image plane.

  13. Rapid high resolution imaging with a dual-channel scanning technique.

    PubMed

    de Castro, Alberto; Huang, Gang; Sawides, Lucie; Luo, Ting; Burns, Stephen A

    2016-04-15

    A spatial shift between channels in a dual-beam raster-scan imaging system introduces a temporal separation between images from the two channels that can be much shorter than the frame rate of the system. The technique is demonstrated by measuring the velocity of erythrocytes in the retinal capillaries. We used an adaptive optics scanning laser ophthalmoscope and introduced a temporal separation between imaging channels of 4.7 ms. We imaged three subjects and measured changing capillary blood flow velocity at the pulse rate. Since the time shift between channels is easily and continuously adjustable, this method can be used to measure rapidly changing events in any raster scan system with little added complexity. PMID:27082369

  14. Scanning magnetic tunnel junction microscope for high-resolution imaging of remanent magnetization fields

    NASA Astrophysics Data System (ADS)

    Lima, E. A.; Bruno, A. C.; Carvalho, H. R.; Weiss, B. P.

    2014-10-01

    Scanning magnetic microscopy is a new methodology for mapping magnetic fields with high spatial resolution and field sensitivity. An important goal has been to develop high-performance instruments that do not require cryogenic technology due to its high cost, complexity, and limitation on sensor-to-sample distance. Here we report the development of a low-cost scanning magnetic microscope based on commercial room-temperature magnetic tunnel junction (MTJ) sensors that typically achieves spatial resolution better than 7 µm. By comparing different bias and detection schemes, optimal performance was obtained when biasing the MTJ sensor with a modulated current at 1.0 kHz in a Wheatstone bridge configuration while using a lock-in amplifier in conjunction with a low-noise custom-made preamplifier. A precision horizontal (x-y) scanning stage comprising two coupled nanopositioners controls the position of the sample and a linear actuator adjusts the sensor-to-sample distance. We obtained magnetic field sensitivities better than 150 nT/Hz1/2 between 0.1 and 10 Hz, which is a critical frequency range for scanning magnetic microscopy. This corresponds to a magnetic moment sensitivity of 10-14 A m2, a factor of 100 better than achievable with typical commercial superconducting moment magnetometers. It also represents an improvement in sensitivity by a factor between 10 and 30 compared to similar scanning MTJ microscopes based on conventional bias-detection schemes. To demonstrate the capabilities of the instrument, two polished thin sections of representative geological samples were scanned along with a synthetic sample containing magnetic microparticles. The instrument is usable for a diversity of applications that require mapping of samples at room temperature to preserve magnetic properties or viability, including paleomagnetism and rock magnetism, nondestructive evaluation of materials, and biological assays.

  15. Spectral deblurring: an algorithm for high-resolution, hybrid spectral CT

    NASA Astrophysics Data System (ADS)

    Clark, D. P.; Badea, C. T.

    2015-03-01

    We are developing a hybrid, dual-source micro-CT system based on the combined use of an energy integrating (EID) x-ray detector and a photon counting x-ray detector (PCXD). Due to their superior spectral resolving power, PCXDs have the potential to reduce radiation dose and to enable functional and molecular imaging with CT. In most current PCXDs, however, spatial resolution and field of view are limited by hardware development and charge sharing effects. To address these problems, we propose spectral deblurring—a relatively simple algorithm for increasing the spatial resolution of hybrid, spectral CT data. At the heart of the algorithm is the assumption that the underlying CT data is piecewise constant, enabling robust recovery in the presence of noise and spatial blur by enforcing gradient sparsity. After describing the proposed algorithm, we summarize simulation experiments which assess the trade-offs between spatial resolution, contrast, and material decomposition accuracy given realistic levels of noise. When the spatial resolution between imaging chains has a ratio of 5:1, spectral deblurring results in a 52% increase in the material decomposition accuracy of iodine, gadolinium, barium, and water vs. linear interpolation. For a ratio of 10:1, a realistic representation of our hybrid imaging system, a 52% improvement was also seen. Overall, we conclude that the performance breaks down around high frequency and low contrast structures. Following the simulation experiments, we apply the algorithm to ex vivo data acquired in a mouse injected with an iodinated contrast agent and surrounded by vials of iodine, gadolinium, barium, and water.

  16. CT Scans - Multiple Languages: MedlinePlus

    MedlinePlus

    ... List of All Topics All CT Scans - Multiple Languages To use the sharing features on this page, please enable JavaScript. Arabic (العربية) Chinese - Simplified (简体中文) Chinese - Traditional (繁體中文) French ( ...

  17. Characterization of rock thermal conductivity by high-resolution optical scanning

    USGS Publications Warehouse

    Popov, Y.A.; Pribnow, D.F.C.; Sass, J.H.; Williams, C.F.; Burkhardt, H.

    1999-01-01

    We compared thress laboratory methods for thermal conductivity measurements: divided-bar, line-source and optical scanning. These methods are widely used in geothermal and petrophysical studies, particularly as applied to research on cores from deep scientific boreholes. The relatively new optical scanning method has recently been perfected and applied to geophysical problems. A comparison among these methods for determining the thermal conductivity tensor for anisotropic rocks is based on a representative collection of 80 crystalline rock samples from the KTB continental deep borehole (Germany). Despite substantial thermal inhomogeneity of rock thermal conductivity (up to 40-50% variation) and high anisotropy (with ratios of principal values attaining 2 and more), the results of measurements agree very well among the different methods. The discrepancy for measurements along the foliation is negligible (<1%). The component of thermal conductivity normal to the foliation reveals somewhat larger differences (3-4%). Optical scanning allowed us to characterize the thermal inhomogeneity of rocks and to identify a three-dimensional anisotropy in thermal conductivity of some gneiss samples. The merits of optical scanning include minor random errors (1.6%), the ability to record the variation of thermal conductivity along the sample, the ability to sample deeply using a slow scanning rate, freedom from constraints for sample size and shape, and quality of mechanical treatment of the sample surface, a contactless mode of measurement, high speed of operation, and the ability to measure on a cylindrical sample surface. More traditional methods remain superior for characterizing bulk conductivity at elevated temperature.Three laboratory methods including divided-bar, line-source and optical scanning are widely applied in geothermal and petrophysical studies. In this study, these three methods were compared for determining the thermal conductivity tensor for anisotropic rocks

  18. Galileo PPR at Io: High Resolution Scans Taken in Conjunction with SSA and NIMS Data

    NASA Technical Reports Server (NTRS)

    Rathbun, J. A.; Spencer, J. R.; Tamppari, L. K.; Martin, T. Z.; Barnard, L.; Travis, L. D.

    2003-01-01

    The Galileo Photopolarimeter-Radiometer (PPR), when used in the radiometry mode which is most often used at Io, is a long-wavelength infrared single-aperture photometer. It is sensitive to temperatures from about 60 to several hundred K, and is thus useful for studying the volcanoes and background temperatures on Io. PPR can take raster scan images when it is the primary instrument being used (these data were discussed last year, see Rathbun et al., 2002). It can also take data in ride-along mode in conjunction with another remote sensing instrument (either SSI or NIMS) producing one-dimensional temperature scans. The best data of this type were taken during the close approach flybys during orbits I24, I25, I27, I31, I32, and I33 and include measurements of the volcanoes Pele, Prometheus, Pillan, Zamama, Tvashtar, Daedalus, Amarani, Gish Bar, Isum, Emakong, Tupan, and Tohil.

  19. High resolution imaging and elemental analysis of PAGE electrophoretograms by scanning proton microprobe

    NASA Astrophysics Data System (ADS)

    Szőkefalvi-Nagy, Z.; Kocsonya, A.; Kovács, I.; Hopff, D.; Lüthje, S.; Niecke, M.

    2009-06-01

    Metal content of metalloproteins can be detected and even quantified by the PIXE-PAGE method. In this technique the proteins are separated by thin layer electrophoresis (by polyacrylamide gel electrophoresis (PAGE) in most cases) and the properly dried gel sections are analyzed by PIXE using "band-shaped" proton milli-beam. This PIXE-PAGE method was adapted for our scanning proton microprobe. The microPIXE-PAGE version provides two-dimensional elemental mapping of the protein bands. In addition, the fast continuous scanning reduces the risk of the thermal deterioration of the sample and the X-ray contribution from dust-impurities can be filtered out in the data evaluation process.

  20. A scanning Hall probe microscope for high resolution magnetic imaging down to 300 mK

    NASA Astrophysics Data System (ADS)

    Khotkevych, V. V.; Milošević, M. V.; Bending, S. J.

    2008-12-01

    We present the design, construction, and performance of a low-temperature scanning Hall probe microscope with submicron lateral resolution and a large scanning range. The detachable microscope head is mounted on the cold flange of a commercial H3e-refrigerator (Oxford Instruments, Heliox VT-50) and operates between room temperature and 300 mK. It is fitted with a three-axis slip-stick nanopositioner that enables precise in situ adjustment of the probe location within a 6×6×7 mm3 space. The local magnetic induction at the sample surface is mapped with an easily changeable microfabricated Hall probe [typically GsAs/AlGaAs or AlGaAs/InGaAs/GaAs Hall sensors with integrated scanning tunnel microscopy (STM) tunneling tips] and can achieve minimum detectable fields ⩾10 mG/Hz1/2. The Hall probe is brought into very close proximity to the sample surface by sensing and controlling tunnel currents at the integrated STM tip. The instrument is capable of simultaneous tunneling and Hall signal acquisition in surface-tracking mode. We illustrate the potential of the system with images of superconducting vortices at the surface of a Nb thin film down to 372 mK, and also of labyrinth magnetic-domain patterns of an yttrium iron garnet film captured at room temperature.

  1. A scanning Hall probe microscope for high resolution magnetic imaging down to 300 mK

    SciTech Connect

    Khotkevych, V. V.; Bending, S. J.; Milosevic, M. V.

    2008-12-15

    We present the design, construction, and performance of a low-temperature scanning Hall probe microscope with submicron lateral resolution and a large scanning range. The detachable microscope head is mounted on the cold flange of a commercial {sup 3}He-refrigerator (Oxford Instruments, Heliox VT-50) and operates between room temperature and 300 mK. It is fitted with a three-axis slip-stick nanopositioner that enables precise in situ adjustment of the probe location within a 6x6x7 mm{sup 3} space. The local magnetic induction at the sample surface is mapped with an easily changeable microfabricated Hall probe [typically GsAs/AlGaAs or AlGaAs/InGaAs/GaAs Hall sensors with integrated scanning tunnel microscopy (STM) tunneling tips] and can achieve minimum detectable fields {>=}10 mG/Hz{sup 1/2}. The Hall probe is brought into very close proximity to the sample surface by sensing and controlling tunnel currents at the integrated STM tip. The instrument is capable of simultaneous tunneling and Hall signal acquisition in surface-tracking mode. We illustrate the potential of the system with images of superconducting vortices at the surface of a Nb thin film down to 372 mK, and also of labyrinth magnetic-domain patterns of an yttrium iron garnet film captured at room temperature.

  2. Imaging interactions of metal oxide nanoparticles with macrophage cells by ultra-high resolution scanning electron microscopy techniques†

    PubMed Central

    Plascencia-Villa, Germán; Starr, Clarise R.; Armstrong, Linda S.; Ponce, Arturo

    2016-01-01

    Use of engineered metal oxide nanoparticles in a plethora of biological applications and custom products has warned about some possible dose-dependent cytotoxic effects. Macrophages are key components of the innate immune system used to study possible toxic effects and internalization of different nanoparticulate materials. In this work, ultra-high resolution field emission scanning electron microscopy (FE-SEM) was used to offer new insights into the dynamical processes of interaction of nanomaterials with macrophage cells dosed with different concentrations of metal oxide nanoparticles (CeO2, TiO2 and ZnO). The versatility of FE-SEM has allowed obtaining a detailed characterization of processes of adsorption and endocytosis of nanoparticles, by using advanced analytical and imaging techniques on complete unstained uncoated cells, including secondary electron imaging, high-sensitive backscattered electron imaging, X-ray microanalysis and stereoimaging. Low voltage BF/DF-STEM confirmed nanoparticle adsorption and internalization into endosomes of CeO2 and TiO2, whereas ZnO develop apoptosis after 24 h of interaction caused by dissolution and invasion of cell nucleus. Ultra-high resolution scanning electron microscopy techniques provided new insights into interactions of inorganic nanoparticles with macrophage cells with high spatial resolution. PMID:23023106

  3. High-Resolution CT and Angiographic Evaluation of NexStent Wall Adaptation

    SciTech Connect

    Nemes, Balazs Lukacs, Levente; Balazs, Gyoergy; Dosa, Edit; Berczi, Viktor; Huettl, Kalman

    2009-05-15

    Carotid stenting is a minimally invasive treatment for extracranial carotid artery stenosis. Stent design may affect technical success and complications in a certain subgroup of patients. We examined the wall adaptability of a new closed-cell carotid stent (NexStent), which has a unique rolled sheet design. Forty-one patients had 42 carotid arteries treated with angioplasty and stenting for internal carotid artery stenosis. The mean patient age was 65 {+-} 10 years. All patients underwent high-resolution computed tomographic angiography after the stent implantation. Data analysis included pre- and postprocedural stenosis, procedure complications, plaque calcification, and stent apposition. We reviewed the angiographic and computed tomographic images for plaque coverage and stent expansion. All procedures were technically successful. Mean stenosis was reduced from 84 {+-} 8% before the procedure to 15.7 {+-} 7% after stenting. Two patients experienced transient ischemic attack; one patient had bradycardia and hypotension. Stent induced kinking was observed in one case. Good plaque coverage and proper overlapping of the rolled sheet was achieved in all cases. There was weak correlation between the residual stenosis and the amount of calcification. The stent provides adequate expansion and adaptation to the tapering anatomy of the bifurcation.

  4. High-resolution sagittal and coronal reformatted CT images of the larynx

    SciTech Connect

    Silverman, P.M.; Johnson, G.A.; Korobkin, M.

    1983-04-01

    Computed tomography has become the major technique for evaluation of patients with laryngeal corcinoma and trauma to the larynx. The routine examination usually consists of 5 mm contiguous selection through the larynx in quiet respiration. Reformatted images obtained from these sections have not been of clinical value, in part because of the poor resolution of these images. In the past, thin-section scanning (1.5 mm collimation) has been impractical because of the significant time required to scan the entire larynx. By using the technique of rapid sequential scanning with automated table incrementation this logistic difficulty can be overcome, and the total thin-section examination may be performed in less than 9 min. Sophisticated computer software allows rapid reformatting of transaxial images in sagittal and coronal planes. This report illustates the normal and abnormal appearance of the larynx on coronal and sagittal reformatted images and compares reformatted images using the routine technique to those using the thin-section technique.

  5. Laser Scanning for the definition of high resolution topography in the Apuan Alps (IT) marble district

    NASA Astrophysics Data System (ADS)

    Riccucci, Silvia; Salvini, Riccardo; Francioni, Mirko

    2010-05-01

    The present paper describes the results of five laser scanning surveys performed by a Leica™ ScanStation2 with the aim of producing an high definition topography of a quarry, at the scale of 1:1,000. The project comes from a joint research carried out by the Authors in collaboration with the Local Sanitary Unit Agency (ASL n.1) of Massa and Carrara (IT). The main objective of this work has been the survey of both the exploited quarry walls and the upper residual and natural slopes. The area of interest is characterized by several quarry fronts which develop to variable and alternate directions to create very evident rock spurs, from NW-SE to NE-SW trending for a total wideness of about 2 hectares. Moreover, the quarry walls are sub-vertical and sometimes overhang by a total height of 100 m in respect to the quarry floor. Differential GPS and orthometric correction have been applied in order to co-register and to georeference the five point clouds; for these purposes a series of optical targets have been measured using a Laser Total Station. The subsequent phase has been the mesh construction and editing, from which a topographic map, 25 cm equidistance contours lines, has been created. The planimetric map shows the position and the geometry of crests, banks, escarpments, walls and all others exploitation features and the characteristics of the upper natural slopes. Morphological profiles along the maximum slope have been realized in order to better plan the future extractive activities according to the regional law. In order to make easier the prospective observation of detailed and overall areas, 3D views of multi-directional orientation have been realized. The produced data has been published by using the free LeicaTM TruView plug-in for Internet Explorer in a way to easily view the photographs and to measure the laser scan point clouds. Processing results have highlighted the higher spatial resolution of data coming from laser scanning in respect to the

  6. High-resolution adaptive optics scanning laser ophthalmoscope with multiple deformable mirrors

    DOEpatents

    Chen, Diana C.; Olivier, Scot S.; Jones; Steven M.

    2010-02-23

    An adaptive optics scanning laser ophthalmoscopes is introduced to produce non-invasive views of the human retina. The use of dual deformable mirrors improved the dynamic range for correction of the wavefront aberrations compared with the use of the MEMS mirror alone, and improved the quality of the wavefront correction compared with the use of the bimorph mirror alone. The large-stroke bimorph deformable mirror improved the capability for axial sectioning with the confocal imaging system by providing an easier way to move the focus axially through different layers of the retina.

  7. Characterization of microfabricated probes for combined atomic force and high-resolution scanning electrochemical microscopy.

    PubMed

    Gullo, Maurizio R; Frederix, Patrick L T M; Akiyama, Terunobu; Engel, Andreas; deRooij, Nico F; Staufer, Urs

    2006-08-01

    A combined atomic force and scanning electrochemical microscope probe is presented. The probe is electrically insulated except at the very apex of the tip, which has a radius of curvature in the range of 10-15 nm. Steady-state cyclic voltammetry measurements for the reduction of Ru(NH3)6Cl3 and feedback experiments showed a distinct and reproducible response of the electrode. These experimental results agreed with finite element simulations for the corresponding diffusion process. Sequentially topographical and electrochemical studies of Pt lines deposited onto Si3N4 and spaced 100 nm apart (edge to edge) showed a lateral electrochemical resolution of 10 nm. PMID:16878880

  8. Line-scanning confocal microscopy for high-resolution imaging of upconverting rare-earth-based contrast agents

    NASA Astrophysics Data System (ADS)

    Higgins, Laura M.; Zevon, Margot; Ganapathy, Vidya; Sheng, Yang; Tan, Mei Chee; Riman, Richard E.; Roth, Charles M.; Moghe, Prabhas V.; Pierce, Mark C.

    2015-11-01

    Rare-earth (RE) doped nanocomposites emit visible luminescence when illuminated with continuous wave near-infrared light, making them appealing candidates for use as contrast agents in biomedical imaging. However, the emission lifetime of these materials is much longer than the pixel dwell times used in scanning intravital microscopy. To overcome this limitation, we have developed a line-scanning confocal microscope for high-resolution, optically sectioned imaging of samples labeled with RE-based nanomaterials. Instrument performance is quantified using calibrated test objects. NaYF4:Er,Yb nanocomposites are imaged in vitro, and in ex vivo tissue specimens, with direct comparison to point-scanning confocal microscopy. We demonstrate that the extended pixel dwell time of line-scanning confocal microscopy enables subcellular-level imaging of these nanomaterials while maintaining optical sectioning. The line-scanning approach thus enables microscopic imaging of this emerging class of contrast agents for preclinical studies, with the potential to be adapted for real-time in vivo imaging in the clinic.

  9. Line-scanning confocal microscopy for high-resolution imaging of upconverting rare-earth-based contrast agents.

    PubMed

    Higgins, Laura M; Zevon, Margot; Ganapathy, Vidya; Sheng, Yang; Tan, Mei Chee; Riman, Richard E; Roth, Charles M; Moghe, Prabhas V; Pierce, Mark C

    2015-11-01

    Rare-earth (RE) doped nanocomposites emit visible luminescence when illuminated with continuous wave near-infrared light, making them appealing candidates for use as contrast agents in biomedical imaging. However, the emission lifetime of these materials is much longer than the pixel dwell times used in scanning intravital microscopy. To overcome this limitation, we have developed a line-scanning confocal microscope for high-resolution, optically sectioned imaging of samples labeled with RE-based nanomaterials. Instrument performance is quantified using calibrated test objects. NaYF4 : Er,Yb nanocomposites are imaged in vitro, and in ex vivo tissue specimens, with direct comparison to point-scanning confocal microscopy. We demonstrate that the extended pixel dwell time of line-scanning confocal microscopy enables subcellular-level imaging of these nanomaterials while maintaining optical sectioning. The line-scanning approach thus enables microscopic imaging of this emerging class of contrast agents for preclinical studies, with the potential to be adapted for real-time in vivo imaging in the clinic. PMID:26603495

  10. High resolution scanning photoluminescence characterization of semi-insulating GaAs using a laser scanning microscope

    NASA Astrophysics Data System (ADS)

    Marek, J.; Elliot, A. G.; Wilke, V.; Geiss, R.

    1986-12-01

    Spatially resolved photoluminescence properties of semi-insulating, liquid encapsulated Czochralski-grown GaAs substrates are analyzed with a laser scanning microscope. The improved resolution of the laser scanning microscope results in the observation of single dislocations within the subgrain boundaries of the polyganized dislocation cell network for the first time by photoluminescence. Both the cell structure and the Cottrell cloud are clearly resolved.

  11. Comparison of quantitative myocardial perfusion imaging CT to fluorescent microsphere-based flow from high-resolution cryo-images

    NASA Astrophysics Data System (ADS)

    Eck, Brendan L.; Fahmi, Rachid; Levi, Jacob; Fares, Anas; Wu, Hao; Li, Yuemeng; Vembar, Mani; Dhanantwari, Amar; Bezerra, Hiram G.; Wilson, David L.

    2016-03-01

    Myocardial perfusion imaging using CT (MPI-CT) has the potential to provide quantitative measures of myocardial blood flow (MBF) which can aid the diagnosis of coronary artery disease. We evaluated the quantitative accuracy of MPI-CT in a porcine model of balloon-induced LAD coronary artery ischemia guided by fractional flow reserve (FFR). We quantified MBF at baseline (FFR=1.0) and under moderate ischemia (FFR=0.7) using MPI-CT and compared to fluorescent microsphere-based MBF from high-resolution cryo-images. Dynamic, contrast-enhanced CT images were obtained using a spectral detector CT (Philips Healthcare). Projection-based mono-energetic images were reconstructed and processed to obtain MBF. Three MBF quantification approaches were evaluated: singular value decomposition (SVD) with fixed Tikhonov regularization (ThSVD), SVD with regularization determined by the L-Curve criterion (LSVD), and Johnson-Wilson parameter estimation (JW). The three approaches over-estimated MBF compared to cryo-images. JW produced the most accurate MBF, with average error 33.3+/-19.2mL/min/100g, whereas LSVD and ThSVD had greater over-estimation, 59.5+/-28.3mL/min/100g and 78.3+/-25.6 mL/min/100g, respectively. Relative blood flow as assessed by a flow ratio of LAD-to-remote myocardium was strongly correlated between JW and cryo-imaging, with R2=0.97, compared to R2=0.88 and 0.78 for LSVD and ThSVD, respectively. We assessed tissue impulse response functions (IRFs) from each approach for sources of error. While JW was constrained to physiologic solutions, both LSVD and ThSVD produced IRFs with non-physiologic properties due to noise. The L-curve provided noise-adaptive regularization but did not eliminate non-physiologic IRF properties or optimize for MBF accuracy. These findings suggest that model-based MPI-CT approaches may be more appropriate for quantitative MBF estimation and that cryo-imaging can support the development of MPI-CT by providing spatial distributions of MBF.

  12. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale.

    PubMed

    Zackrisson, Martin; Hallin, Johan; Ottosson, Lars-Göran; Dahl, Peter; Fernandez-Parada, Esteban; Ländström, Erik; Fernandez-Ricaud, Luciano; Kaferle, Petra; Skyman, Andreas; Stenberg, Simon; Omholt, Stig; Petrovič, Uroš; Warringer, Jonas; Blomberg, Anders

    2016-01-01

    The capacity to map traits over large cohorts of individuals-phenomics-lags far behind the explosive development in genomics. For microbes, the estimation of growth is the key phenotype because of its link to fitness. We introduce an automated microbial phenomics framework that delivers accurate, precise, and highly resolved growth phenotypes at an unprecedented scale. Advancements were achieved through the introduction of transmissive scanning hardware and software technology, frequent acquisition of exact colony population size measurements, extraction of population growth rates from growth curves, and removal of spatial bias by reference-surface normalization. Our prototype arrangement automatically records and analyzes close to 100,000 growth curves in parallel. We demonstrate the power of the approach by extending and nuancing the known salt-defense biology in baker's yeast. The introduced framework represents a major advance in microbial phenomics by providing high-quality data for extensive cohorts of individuals and generating well-populated and standardized phenomics databases. PMID:27371952

  13. High-resolution, lensless endoscope based on digital scanning through a multimode optical fiber.

    PubMed

    Papadopoulos, Ioannis N; Farahi, Salma; Moser, Christophe; Psaltis, Demetri

    2013-02-01

    We propose and experimentally demonstrate an ultra-thin rigid endoscope (450 μm diameter) based on a passive multimode optical fiber. We use digital phase conjugation to overcome the modal scrambling of the fiber to tightly focus and scan the laser light at its distal end. By exploiting the maximum number of modes available, sub-micron resolution, high quality fluorescence images of neuronal cells were acquired. The imaging system is evaluated in terms of fluorescence collection efficiency, resolution and field of view. The small diameter of the proposed endoscope, along with its high quality images offer an opportunity for minimally invasive medical endoscopic imaging and diagnosis based on cellular phenotype via direct tissue penetration. PMID:23411747

  14. High resolution chemical mapping via scanning transmission x-ray microscopy

    NASA Astrophysics Data System (ADS)

    Fleckenstein, Holger

    Scanning transmission x-ray microscopy (STXM) combines imaging at sub-50 nanometer spatial resolution in the soft x-ray region with x-ray absorption spectroscopy at an energy resolution of 0.1 eV and better. The sensitivity to light elements and their chemical bonding states in the near-edge x-ray absorption region together with 2D microscopy allow to map out the chemical composition of microscopic samples. Over the past decades STXM has been used by scientists from various fields such as material sciences, biology, earth and environmental sciences. This thesis describes the upgrade of the STXM microscopes at the National Synchrotron Light Source in Brookhaven National Laboratory. The now 5 th generation was a retrofit of the existing microscopes with a three axes laser interferometer system for improved relative sample positioning. Included in the same project were a hardware change towards faster scan positioning and data acquisition electronics as well as a new software concept allowing for remote control of the microscopes. We also present the use of non-negative matrix factorization to analyze spectromicroscopic data sets. Since in many specimens of interest in biology or related fields a number of spectral signatures may be unknown, thickness maps of the chemical composition of a sample cannot be calculated directly. A previous method used principal component analysis to orthogonalize and noise filter spectromicroscopy data, followed by cluster analysis as a form of unsupervised pattern recognition to determine pixels with spectroscopic similarity. We tried a non-negative matrix factorization algorithm to find a parts-based representation of the same data. The non-negativity constraint allows for a physical interpretation of component spectra and thickness maps. The STXM technique was utilized to investigate the composition of human sperm samples. We describe why the analysis of human sperm via x-ray spectromicroscopy can provide valuable information and what

  15. Automated Classification of Usual Interstitial Pneumonia using Regional Volumetric Texture Analysis in High-Resolution CT

    PubMed Central

    Depeursinge, Adrien; Chin, Anne S.; Leung, Ann N.; Terrone, Donato; Bristow, Michael; Rosen, Glenn; Rubin, Daniel L.

    2014-01-01

    Objectives We propose a novel computational approach for the automated classification of classic versus atypical usual interstitial pneumonia (UIP). Materials and Methods 33 patients with UIP were enrolled in this study. They were classified as classic versus atypical UIP by a consensus of two thoracic radiologists with more than 15 years of experience using the American Thoracic Society evidence–based guidelines for CT diagnosis of UIP. Two cardiothoracic fellows with one year of subspecialty training provided independent readings. The system is based on regional characterization of the morphological tissue properties of lung using volumetric texture analysis of multiple detector CT images. A simple digital atlas with 36 lung subregions is used to locate texture properties, from which the responses of multi-directional Riesz wavelets are obtained. Machine learning is used to aggregate and to map the regional texture attributes to a simple score that can be used to stratify patients with UIP into classic and atypical subtypes. Results We compared the predictions based on regional volumetric texture analysis with the ground truth established by expert consensus. The area under the receiver operating characteristic curve of the proposed score was estimated to be 0.81 using a leave-one-patient-out cross-validation, with high specificity for classic UIP. The performance of our automated method was found to be similar to that of the two fellows and to the agreement between experienced chest radiologists reported in the literature. However, the errors of our method and the fellows occurred on different cases, which suggests that combining human and computerized evaluations may be synergistic. Conclusions Our results are encouraging and suggest that an automated system may be useful in routine clinical practice as a diagnostic aid for identifying patients with complex lung disease such as classic UIP, obviating the need for invasive surgical lung biopsy and its

  16. Segmenting the papillary muscles and the trabeculae from high resolution cardiac CT through restoration of topological handles.

    PubMed

    Gao, Mingchen; Chen, Chao; Zhang, Shaoting; Qian, Zhen; Metaxas, Dimitris; Axel, Leon

    2013-01-01

    We introduce a novel algorithm for segmenting the high resolution CT images of the left ventricle (LV), particularly the papillary muscles and the trabeculae. High quality segmentations of these structures are necessary in order to better understand the anatomical function and geometrical properties of LV. These fine structures, however, are extremely challenging to capture due to their delicate and complex nature in both geometry and topology. Our algorithm computes the potential missing topological structures of a given initial segmentation. Using techniques from computational topology, e.g. persistent homology, our algorithm find topological handles which are likely to be the true signal. To further increase accuracy, these proposals are measured by the saliency and confidence from a trained classifier. Handles with high scores are restored in the final segmentation, leading to high quality segmentation results of the complex structures. PMID:24683968

  17. High-Resolution Electrochemical Scanning Tunneling Microscopy (EC-STM) Flow-Cell Studies.

    PubMed

    Lay, Marcus D; Sorenson, Thomas A; Stickney, John L

    2003-09-25

    Atomic-level studies involving an electrochemical scanning tunneling microscope (EC-STM) flow-cell are presented. Multiple electrochemical atomic layer epitaxy (EC-ALE) cycles of CdTe formation were observed. For a binary compound (i.e., CdTe), an EC-ALE cycle involves exposure of the substrate to a solution of the first precursor (CdSO4), followed by exposure to the second precursor (TeO2), while maintaining potential control. Interleaving blank rinses may also be used, but were omitted in the present studies. To allow the exchange of solutions, the EC-STM cell was modified to allow solution exchange via a single peristaltic pump. A selection valve was used to choose the solution to be introduced into the cell. There is evidence that the growth of the initial layer of CdTe on Au(111), the (√7 × √7)-CdTe monolayer, can be improved in homogeneity and morphology by repeatedly depositing and stripping the Cd atomic layer. Therefore, a new starting cycle, which should improve the quality of deposits formed via EC-ALE, has been developed. PMID:26317446

  18. High-Resolution Adaptive Optics Scanning Laser Ophthalmoscope with Dual Deformable Mirrors

    SciTech Connect

    Chen, D C; Jones, S M; Silva, D A; Olivier, S S

    2006-08-11

    Adaptive optics scanning laser ophthalmoscope (AO SLO) has demonstrated superior optical quality of non-invasive view of the living retina, but with limited capability of aberration compensation. In this paper, we demonstrate that the use of dual deformable mirrors can effectively compensate large aberrations in the human retina. We used a bimorph mirror to correct large-stroke, low-order aberrations and a MEMS mirror to correct low-stroke, high-order aberration. The measured ocular RMS wavefront error of a test subject was 240 nm without AO compensation. We were able to reduce the RMS wavefront error to 90 nm in clinical settings using one deformable mirror for the phase compensation and further reduced the wavefront error to 48 nm using two deformable mirrors. Compared with that of a single-deformable-mirror SLO system, dual AO SLO offers much improved dynamic range and better correction of the wavefront aberrations. The use of large-stroke deformable mirrors provided the system with the capability of axial sectioning different layers of the retina. We have achieved diffraction-limited in-vivo retinal images of targeted retinal layers such as photoreceptor layer, blood vessel layer and nerve fiber layers with the combined phase compensation of the two deformable mirrors in the AO SLO.

  19. Extended Depth of Field for High-Resolution Scanning Transmission Electron Microscopy

    SciTech Connect

    Hovden, Robert; Xin, Huolin L.; Muller, David A.

    2010-12-02

    Aberration-corrected scanning transmission electron microscopes (STEMs) provide sub-Angstrom lateral resolution; however, the large convergence angle greatly reduces the depth of field. For microscopes with a small depth of field, information outside of the focal plane quickly becomes blurred and less defined. It may not be possible to image some samples entirely in focus. Extended depth-of-field techniques, however, allow a single image, with all areas in focus, to be extracted from a series of images focused at a range of depths. In recent years, a variety of algorithmic approaches have been employed for bright-field optical microscopy. Here, we demonstrate that some established optical microscopy methods can also be applied to extend the ~6 nm depth of focus of a 100 kV 5th-order aberration-corrected STEM (α{sub max} = 33 mrad) to image Pt-Co nanoparticles on a thick vulcanized carbon support. These techniques allow us to automatically obtain a single image with all the particles in focus as well as a complimentary topography map.

  20. High-resolution imaging by scanning electron microscopy of semithin sections in correlation with light microscopy.

    PubMed

    Koga, Daisuke; Kusumi, Satoshi; Shodo, Ryusuke; Dan, Yukari; Ushiki, Tatsuo

    2015-12-01

    In this study, we introduce scanning electron microscopy (SEM) of semithin resin sections. In this technique, semithin sections were adhered on glass slides, stained with both uranyl acetate and lead citrate, and observed with a backscattered electron detector at a low accelerating voltage. As the specimens are stained in the same manner as conventional transmission electron microscopy (TEM), the contrast of SEM images of semithin sections was similar to TEM images of ultrathin sections. Using this technique, wide areas of semithin sections were also observed by SEM, without the obstruction of grids, which was inevitable for traditional TEM. This study also applied semithin section SEM to correlative light and electron microscopy. Correlative immunofluorescence microscopy and immune-SEM were performed in semithin sections of LR white resin-embedded specimens using a FluoroNanogold-labeled secondary antibody. Because LR white resin is hydrophilic and electron stable, this resin is suitable for immunostaining and SEM observation. Using correlative microscopy, the precise localization of the primary antibody was demonstrated by fluorescence microscopy and SEM. This method has great potential for studies examining the precise localization of molecules, including Golgi- and ER-associated proteins, in correlation with LM and SEM. PMID:26206941

  1. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale

    PubMed Central

    Zackrisson, Martin; Hallin, Johan; Ottosson, Lars-Göran; Dahl, Peter; Fernandez-Parada, Esteban; Ländström, Erik; Fernandez-Ricaud, Luciano; Kaferle, Petra; Skyman, Andreas; Stenberg, Simon; Omholt, Stig; Petrovič, Uroš; Warringer, Jonas; Blomberg, Anders

    2016-01-01

    The capacity to map traits over large cohorts of individuals—phenomics—lags far behind the explosive development in genomics. For microbes, the estimation of growth is the key phenotype because of its link to fitness. We introduce an automated microbial phenomics framework that delivers accurate, precise, and highly resolved growth phenotypes at an unprecedented scale. Advancements were achieved through the introduction of transmissive scanning hardware and software technology, frequent acquisition of exact colony population size measurements, extraction of population growth rates from growth curves, and removal of spatial bias by reference-surface normalization. Our prototype arrangement automatically records and analyzes close to 100,000 growth curves in parallel. We demonstrate the power of the approach by extending and nuancing the known salt-defense biology in baker’s yeast. The introduced framework represents a major advance in microbial phenomics by providing high-quality data for extensive cohorts of individuals and generating well-populated and standardized phenomics databases PMID:27371952

  2. I-IMAS: A 1.5D sensor for high-resolution scanning

    NASA Astrophysics Data System (ADS)

    Fant, A.; Gasiorek, P.; Turchetta, R.; Avset, B.; Bergamaschi, A.; Cavouras, D.; Evangelou, I.; French, M. J.; Galbiati, A.; Georgiou, H.; Hall, G.; Iles, G.; Jones, J.; Longo, R.; Manthos, N.; Metaxas, M. G.; Noy, M.; Ostby, J. M.; Psomadellis, F.; Royle, G. J.; Schulerud, H.; Speller, R. D.; van der Stelt, P. F.; Theodoridis, S.; Triantis, F.; Venanzi, C.

    2007-04-01

    We have developed a 1.5 D CMOS active pixel sensor to be used in conjunction with a scintillator for X-ray imaging. Within the Intelligent Imaging Sensors (I-ImaS) project, multiple sensors will be aligned to form a line-scanning system and its performance evaluated with respect to existing sensors in other digital radiography systems. Each sensor contains a 512×32 array of pixels and the electronics to convert the collected amount of charge to a digital output value. These include programmable gain amplifiers (PGAs) and analogue-to-digital converters (ADCs). The gain of the PGA can be switched between one or two, to increase the sensitivity for smaller collected charge; the ADC is a 14-bit successive approximation with a sampling rate of 1.25 MHz. The ASIC includes a programmable column fixed pattern noise mitigation circuit and a digitally controllable pixel reset mode block. Here we will describe the sensor design and the expected performance.

  3. Extended depth of field for high-resolution scanning transmission electron microscopy.

    PubMed

    Hovden, Robert; Xin, Huolin L; Muller, David A

    2011-02-01

    Aberration-corrected scanning transmission electron microscopes (STEMs) provide sub-Angstrom lateral resolution; however, the large convergence angle greatly reduces the depth of field. For microscopes with a small depth of field, information outside of the focal plane quickly becomes blurred and less defined. It may not be possible to image some samples entirely in focus. Extended depth-of-field techniques, however, allow a single image, with all areas in focus, to be extracted from a series of images focused at a range of depths. In recent years, a variety of algorithmic approaches have been employed for bright-field optical microscopy. Here, we demonstrate that some established optical microscopy methods can also be applied to extend the ∼ 6 nm depth of focus of a 100 kV 5th-order aberration-corrected STEM (α max = 33 mrad) to image Pt-Co nanoparticles on a thick vulcanized carbon support. These techniques allow us to automatically obtain a single image with all the particles in focus as well as a complimentary topography map. PMID:21122192

  4. Acquisition of a High Resolution Field Emission Scanning Electron Microscope for the Analysis of Returned Samples

    NASA Technical Reports Server (NTRS)

    Nittler, Larry R.

    2003-01-01

    This grant furnished funds to purchase a state-of-the-art scanning electron microscope (SEM) to support our analytical facilities for extraterrestrial samples. After evaluating several instruments, we purchased a JEOL 6500F thermal field emission SEM with the following analytical accessories: EDAX energy-dispersive x-ray analysis system with fully automated control of instrument and sample stage; EDAX LEXS wavelength-dispersive x-ray spectrometer for high sensitivity light-element analysis; EDAX/TSL electron backscatter diffraction (EBSD) system with software for phase identification and crystal orientation mapping; Robinson backscatter electron detector; and an in situ micro-manipulator (Kleindiek). The total price was $550,000 (with $150,000 of the purchase supported by Carnegie institution matching funds). The microscope was delivered in October 2002, and most of the analytical accessories were installed by January 2003. With the exception of the wavelength spectrometer (which has been undergoing design changes) everything is working well and the SEM is in routine use in our laboratory.

  5. Characterization of a high-resolution hybrid DOI detector for a dedicated breast PET/CT scanner.

    PubMed

    Godinez, Felipe; Chaudhari, Abhijit J; Yang, Yongfeng; Farrell, Richard; Badawi, Ramsey D

    2012-06-01

    The aim of this study is to design and test a new high-resolution hybrid depth of interaction (DOI) detector for a dedicated breast PET/CT scanner. Two detectors have been designed and built. The completed detectors are based on a 14 × 14 array of 1.5 × 1.5 × 20 mm(3) unpolished lutetium orthosilicate scintillation crystals, with each element coated in a 50 μm layer of reflective material. The detector is read out from both ends using a position-sensitive photomultiplier tube (PSPMT) and a large active area (20 × 20 mm(2)) avalanche photodiode (APD) to enable acquisition of DOI information. Nuclear instrumentation modules were used to characterize the detectors' performances in terms of timing, intrinsic spatial resolution (ISR) and energy resolution, as well as DOI resolution with a dual-ended readout configuration. Measurements with the APD were performed at a temperature of 10 °C. All crystals were identified at all depths, even though the signal amplitude from the PSPMT decreases with depth away from it. We measured a timing resolution of 2.4 ns, and an average energy resolution of 19%. The mean ISR was measured to be 1.2 mm for crystals in the central row of the array for detectors in the face-to-face position. Two off-center positions were measured corresponding to 26° and 51° oblique photon incidence, and the mean ISR at these positions was 1.5 and 1.7 mm, respectively. The average DOI resolution across all crystals and depths was measured to be 2.9 mm (including the beam width of 0.6 mm). This detector design shows good promise as a high-resolution detector for a dedicated breast PET/CT scanner. PMID:22581109

  6. High resolution, high frequency, close-range laser scanning to monitor bedrock erosion after mountain river dam removal

    NASA Astrophysics Data System (ADS)

    Cook, K. L.; Stark, C. P.

    2011-12-01

    The Chijiawan river, located in the Hsuehshan Range in central Taiwan, is a steep, coarse-grained, mixed bedrock-alluvial channel subject to heavy monsoonal rainfall, occasional typhoons and frequent floods. In May 2011, a 15m-high check dam holding back around 200,000m3 of sediment was removed. To monitor subsequent channel response, an array of instruments were deployed prior to dam removal. Given the anticipated magnitude of sediment transport and excellent empirical constraints, the Chijiawan channel is an ideal location to study fluvial incision processes into bedrock. There is abundant bedrock exposed in the river bed downstream of the dam, and we are interested in how the pulse of sediment following dam removal will impact bedrock erosion rates. We monitor erosion using repeat high resolution laser scanning at 8 sites spread along a 3 km long reach, 2 sites upstream of the dam and 6 downstream. We scan two sites with a Konica Minolta Vivid 910 scanner (with an accuracy of 1.4mm), and the remaining sites with a Faro Photon 120 scanner (with an accuracy of 2mm). Scanning at ranges of ~1m (Vivid) to ~10m (Faro), we obtain resolutions of 1 to 3mm. Based on the system developed by Wilson and Hovius (2010), reference frames for repeat surveys consist of permanent stainless steel sockets installed in 14 cm deep holes drilled into the bedrock, combined with removable targets that screw into the sockets for scanning. Vivid data are processed and 3D models are constructed using Rapidform 2004 software. Faro data is processed using Faro's Scene software. In order to compare the high resolution scanning with more traditional low-tech monitoring methods, we have also installed two sets of concrete expansion bolts. We obtain profiles between bolts with both a contour gauge and the scanners. The high accuracy and resolution of these scanners, and the system of precise benchmarks enable us to detect extremely small amounts of erosion. By repeat scanning after individual

  7. Review: two-photon scanning systems for clinical high resolution in vivo tissue imaging

    NASA Astrophysics Data System (ADS)

    König, K.; Müller, J.; Höfer, M.; Müller, C.; Weinigel, M.; Bückle, R.; Elsner, P.; Kaatz, M.; Messerschmidt, B.

    2008-02-01

    The femtosecond laser multiphoton tomograph DermaInspect as well as high NA two-photon GRIN microendoscopes for in vivo tomography of human skin have been used to detect malignant melanoma as well as to study the diffusion and intradermal accumulation of topically applied cosmetical and pharmaceutical components. So far, more than 500 patients and volunteers in Europe, Australia, and Asia have been investigated with this unique tomograph. Near infrared 80 MHz picojoule femtosecond laser pulses were employed to excite endogenous fluorophores such as NAD(P)H, flavoproteins, melanin, and elastin as well as fluorescent components of a variety of ointments via a twophoton excitation process. In addition, collagen has been imaged by second harmonic generation. Using a two-PMT detection system, the ratio of elastin to collagen was determined during optical sectioning. A high submicron spatial resolution and 50 picosecond temporal resolution was achieved using galvoscan mirrors and piezodriven focusing optics as well as a time-correlated single photon counting module with a fast microchannel plate detector and fast photomultipliers. Individual intratissue cells, mitochondria, melanosomes, and the morphology of the nuclei as well as extracellular matrix elements could be clearly visualized due to molecular imaging and the calculation of fluorescence lifetime images. Nanoparticles and intratissue drugs have been detected non-invasively, in situ and over a period of up to 3 months. In addition, hydration effects and UV effects were studied by monitoring modifications of cellular morphology and autofluorescence. The system was used to observe the diffusion through the stratum corneum and the accumulation and release of functionalized nanoparticles along hair shafts and epidermal ridges. The DermaInspect been also employed to gain information on skin age and wound healing in patients with ulcers. Novel developments include a galvo/piezo-scan driven flexible articulated arm as

  8. Comparison of high resolution terrestrial laser scanning and terrestrial photogrammetry for modeling applications

    NASA Astrophysics Data System (ADS)

    Özdemir, Samed; Bayrak, Temel

    2016-04-01

    3D documentation of cultural heritage and engineering projects is an important matter. These documentation applications, requires highest possible accuracy and detail to represent the actual surface correctly. Terrestrial photogrammetric method which is employed to produce 3D models to day, now can obtain dense point clouds thanks to advancements in computer technology. Terrestrial laser scanners gained popularity in the last decade because of their high capacity and today they are being widely used in many applications. However every application has its own requirements that depend on the type of application, modeling environment, accuracy and budget limitations. This means, for every application highest accuracy instruments are not always best, considering the facts that mentioned before. In this study, laser scanner and terrestrial photogrammetric methods' spatial and model accuracies investigated under various conditions which include measuring targets at different instrument to object distances then investigating the accuracy of these measurements, modeling an irregular shaped surface to compare two surfaces volume and surface areas, at last comparing dimensions of known geometrical shaped small objects. Also terrestrial laser scanners and terrestrial photogrammetric methods most suitable application conditions investigated in terms of cost, time, mobility and accuracy. Terrestrial laser scanner has the ability to, measure distances under cm accuracy and directly measuring 3D world but there is also some drawbacks like sensitive, bulky and expensive equipment. When it comes to terrestrial photogrammetry, it has above cm accuracy, comparatively fast (considering the image acquisition stage), inexpensive but it can be affected by the coarse geometry, surface texture and the environmental lighting. Key Words: Accuracy, Comparison, Model, Terrestrial Photogrammetry, Terrestrial Laser Scanning,.

  9. Understanding the structure of nanocatalysts with high resolution scanning/transmission electron microscopy

    NASA Astrophysics Data System (ADS)

    Francis, L. D.; Rivas, J.; José-Yacamán, M.

    2014-03-01

    Nanomaterials including nanoparticles, nanowires and nanotubes play an important role in heterogeneous catalysis. Thanks to the rapid improvement of the electron microscopic techniques and with the advent of aberration corrected electron microscopy as well as theoretical methodologies, the potential effects induced by nanocatalysts are better understood than before by unravelling their atomic structure. A brief introduction to advanced electron microscopic techniques namely aberration corrected scanning transmission electron microscopy (Cs-STEM) is presented and subsequently two examples of nanocatalysts are considered in the present review. The first example will focus on the study of bimetallic/core-shell nanoalloys. In heterogeneous catalysis, catalysts containing two or more metals might show significantly different catalytic properties compared to the parent metals and thus are widely utilized in several catalytic reactions. Atom-by-atom insights of the nanoalloy based catalysts ex: Au-Pd will be described in the present review using a combination of advanced electron microscopic and spectroscopic techniques. A related example on the understanding of bimetallic clusters by HAADF-STEM will also be presented in addition to nanoparticles. In the second case understanding the structure of transition metal chalcogenide based nanocatalysts by HRTEM and aberration corrected STEM, for the case of MoS2 will be discussed. MoS2-based catalysts serve as model catalysts and are employed in the hydrodesulphurisations (HDS) reactions in the removal of sulphur from gasoline and related petrochemical products. They have been studied in various forms including nanowires, nanotubes and nanoplates. Their structure, atomic insights and as a consequence elucidation of their corresponding catalytic activity are thus important.

  10. Modeling river bed morphology, roughness, and surface sedimentology using high resolution terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Brasington, J.; Vericat, D.; Rychkov, I.

    2012-11-01

    Recent advances in technology have revolutionized the acquisition of topographic data, offering new perspectives on the structure and morphology of the Earth's surface. These developments have had a profound impact on the practice of river science, creating a step change in the dimensionality, resolution, and precision of fluvial terrain models. The emergence of "hyperscale" survey methods, including structure from motion photogrammetry and terrestrial laser scanning (TLS), now presents the opportunity to acquire 3-D point cloud data that capture grain-scale detail over reach-scale extents. Translating these data into geomorphologically relevant products is, however, not straightforward. Unlike traditional survey methods, TLS acquires observations rapidly and automatically, but unselectively. This results in considerable "noise" associated with backscatter from vegetation and other artifacts. Moreover, the large data volumes are difficult to visualize; require very high capacity storage; and are not incorporated readily into GIS and simulation models. In this paper we analyze the geomorphological integrity of multiscale terrain models rendered from a TLS survey of the braided River Feshie, Scotland. These raster terrain models are generated using a new, computationally efficient geospatial toolkit: the topographic point cloud analysis toolkit (ToPCAT). This performs an intelligent decimation of point cloud data into a set of 2.5-D terrain models that retain information on the high-frequency subgrid topography, as the moments of the locally detrended elevation distribution. The results quantify the degree of terrain generalization inherent in conventional fluvial DEMs and illustrate how subgrid topographic statistics can be used to map the spatial pattern of particle size, grain roughness, and sedimentary facies at the reach scale.

  11. Doctors Should Bone Up on CT Scan Cancer Risks

    MedlinePlus

    ... fullstory_159909.html Doctors Should Bone Up on CT Scan Cancer Risks Many not aware of exact radiation ... July 15, 2016 (HealthDay News) -- Doctors routinely order CT scans as diagnostic tools. But many are ill-informed ...

  12. Terrestrial laser scanning for high resolution cyclostratigraphy of chert in pelagic limestone series

    NASA Astrophysics Data System (ADS)

    Penasa, L.; Franceschi, M.; Preto, N.

    2012-04-01

    We here propose the use of terrestrial laser scanning (TLS) for the mapping of chert on natural outcrops and for rapid extraction of its distribution along stratigraphic sections. The technique permits rapid production of high-definition time series for cyclostratigraphic analysis. Chert, sometimes referred to as flint, is a widespread component of sedimentary successions. It is often found in deep water and pelagic sediments and is constituted by cryptocrystalline varieties of quartz. It is generally accepted that the origin of chert is principally biogenic; it derives from the slow alteration, through a process called maturation, of opaline organic components as tests and spicules under the influence of pore waters. Most often, chert forms nodules of various size, or more or less continuous layers. Its color shows strong variability (white, red, gray, black). Although it could record paleoceanographic and climatic changes because of its biogenic nature, the cyclostratigraphic study of chert is largely neglected. This is mainly due to the difficulty of logging it. Hand logging is time consuming, but also, because of nodules' highly variable shape, lateral variability of chert abundance is large. Photographic image-processing techniques could help in principle, but they become difficult to use when chert has a color similar to that of the host rock. Chert is easily detectable in TLS generated images because of its very low reflectivity at infrared (IR) wavelengths, also where the color of chert in visible light is close to that of the host rock. Thus, TLS data can be used to map the distribution of chert on an outcrop, and to compute its abundance along a stratigraphic section. The ultimate result of such data processing, for which a suite of original procedures was implemented, is a stratigraphic log that is suitable for time series analysis. A section in the early Cretaceous Maiolica Formation of Central Italy (Gubbio) was considered as preliminary case study for

  13. High-Resolution Imaging of Polyethylene Glycol Coated Dendrimers via Combined Atomic Force and Scanning Tunneling Microscopy

    PubMed Central

    Zhong, Qian; Yin, Nai-Ning; Karsai, Arpad; da Rocha, Sandro R. P.; Liu, Gang-yu

    2015-01-01

    Dendrimers have shown great promise as drug delivery vehicles in recent years because they can be synthesized with designed size and functionalities for optimal transportation, targeting, and biocompatibility. One of the most well-known termini used for biocompatibility is polyethylene glycol (PEG), whose performance is affected by its actual conformation. However, the conformation of individual PEG bound to soft materials such as dendrimers has not been directly observed. Using atomic force microscopy (AFM) and scanning tunneling microscopy (STM), this work characterizes the structure adopted by PEGylated dendrimers with the highest resolution reported to date. AFM imaging enables visualization of the individual dendrimers, as well as the differentiation and characterization of the dendrimer core and PEG shell. STM provides direct imaging of the PEG extensions with high-resolution. Collectively, this investigation provides important insight into the structure of coated dendrimers, which is crucial for the design and development of better drug delivery vehicles. PMID:25685559

  14. Low dose, low noise, and high resolution volume of interest (VOI) imaging in C-arm flat-detector CT

    NASA Astrophysics Data System (ADS)

    Kolditz, Daniel; Kyriakou, Yiannis; Kalender, Willi A.

    2010-04-01

    The high flexibility of C-arm flat-detector computed tomography (FDCT) is used in a volume of interest (VOI) imaging method to handle the challenges of increasing spatial resolution, reducing noise and saving dose. A low-dose overview scan of the object and a high-dose scan of an arbitrary VOI are combined. The first scan is adequate for orientation to select the VOI and the second scan assures high image quality in the VOI. The combination is based on a forward projection of the reconstructed overview volume and the measured VOI data in the raw data domain. Differences in the projection values are matched before a standard Feldkamp-type reconstruction is performed. In simulations, spatial resolution, noise and contrast detectability were evaluated. Measurements of an anthropomorphic phantom were used to validate the proposed method for realistic application. In Monte Carlo dose simulations the dose reduction potential was investigated. By combination of the two scans an image is generated which covers the whole object and provides the actual VOI at high image quality. Spatial resolution was increased whereas noise was decreased from outside to inside the VOI, e.g. for the simulations from 0.8 lp/mm to 3.0 lp/mm and from 39 HU to 18 HU, respectively. Simultaneously, the cumulative dose for this two-scan procedure was significantly reduced in comparison to a conventional high dose scan, e.g. for the performed simulations and measurements by about 95 %. The proposed VOI approach offers significant benefits with respect to high-resolution and low-contrast imaging of a VOI at reduced dose.

  15. Implementation of a new scanning method for high-resolution fluorescence tomography using thermo-sensitive fluorescent agents

    PubMed Central

    Nouizi, Farouk; Kwong, Tiffany C.; Cho, Jaedu; Lin, Yuting; Sampathkumaran, Uma; Gulsen, Gultekin

    2016-01-01

    Conventional fluorescence tomography provides images of the distribution of fluorescent agents within highly scattering media, but suffers from poor spatial resolution. Previously, we introduced a new method termed “temperature-modulated fluorescence tomography” (TM-FT) that generates fluorescence images with high spatial resolution. TM-FT first uses focused ultrasound to locate the distribution of temperature-sensitive fluorescence probes. Afterward, this a priori information is utilized to improve the performance of the inverse solver for conventional fluorescence tomography and reveal quantitatively accurate fluorophore concentration maps. However, the disadvantage of this novel method is the long data acquisition time as the ultrasound beam was scanned in a step-and-shoot mode. In this Letter, we present a new, fast scanning method that reduces the imaging time 40 fold. By continuously scanning the ultrasound beam over a 50 mm by 25 mm field-of-view, high-resolution fluorescence images are obtained in less than 29 min, which is critical for in vivo small animal imaging. PMID:26512501

  16. Implementation of a new scanning method for high-resolution fluorescence tomography using thermo-sensitive fluorescent agents.

    PubMed

    Nouizi, Farouk; Kwong, Tiffany C; Cho, Jaedu; Lin, Yuting; Sampathkumaran, Uma; Gulsen, Gultekin

    2015-11-01

    Conventional fluorescence tomography provides images of the distribution of fluorescent agents within highly scattering media, but suffers from poor spatial resolution. Previously, we introduced a new method termed "temperature-modulated fluorescence tomography" (TM-FT) that generates fluorescence images with high spatial resolution. TM-FT first uses focused ultrasound to locate the distribution of temperature-sensitive fluorescence probes. Afterward, this a priori information is utilized to improve the performance of the inverse solver for conventional fluorescence tomography and reveal quantitatively accurate fluorophore concentration maps. However, the disadvantage of this novel method is the long data acquisition time as the ultrasound beam was scanned in a step-and-shoot mode. In this Letter, we present a new, fast scanning method that reduces the imaging time 40 fold. By continuously scanning the ultrasound beam over a 50 mm by 25 mm field-of-view, high-resolution fluorescence images are obtained in less than 29 min, which is critical for in vivo small animal imaging. PMID:26512501

  17. Evaluation of gas chromatography - electron ionization - full scan high resolution Orbitrap mass spectrometry for pesticide residue analysis.

    PubMed

    Mol, Hans G J; Tienstra, Marc; Zomer, Paul

    2016-09-01

    Gas chromatography with electron ionization and full scan high resolution mass spectrometry with an Orbitrap mass analyzer (GC-EI-full scan Orbitrap HRMS) was evaluated for residue analysis. Pesticides in fruit and vegetables were taken as an example application. The relevant aspects for GC-MS based residue analysis, including the resolving power (15,000 to 120,000 FWHM at m/z 200), scan rate, dynamic range, selectivity, sensitivity, analyte identification, and utility of existing EI-libraries, are assessed and discussed in detail. The optimum acquisition conditions in full scan mode (m/z 50-500) were a resolving power of 60,000 and an automatic-gain-control target value of 3E6. These conditions provided (i) an optimum mass accuracy: within 2 ppm over a wide concentration range, with/without matrix, enabling the use of ±5 ppm mass extraction windows (ii) adequate scan speed: minimum 12 scans/peak, (iii) an intra-scan dynamic range sufficient to achieve LOD/LOQs ≤0.5 pg in fruit/vegetable matrices (corresponding to ≤0.5 μg kg(-1)) for most pesticides. EI-Orbitrap spectra were consistent over a very wide concentration range (5 orders) with good match values against NIST (EI-quadrupole) spectra. The applicability for quantitative residue analysis was verified by validation of 54 pesticides in three matrices (tomato, leek, orange) at 10 and 50 μg/kg. The method involved a QuEChERS-based extraction with a solvent switch into iso-octane, and 1 μL hot splitless injection into the GC-HRMS system. A recovery between 70 and 120% and a repeatability RSD <10% was obtained in most cases. Linearity was demonstrated for the range ≤5-250 μg kg(-1). The pesticides could be identified according to the applicable EU criteria for GC-HRMS (SANTE/11945/2015). GC-EI-full scan Orbitrap HRMS was found to be highly suited for quantitative pesticide residue analysis. The potential of qualitative screening to extend the scope makes it an attractive alternative to GC

  18. Vertical and Horizontal Corneal Epithelial Thickness Profile Using Ultra-High Resolution and Long Scan Depth Optical Coherence Tomography

    PubMed Central

    Jiang, Hong; Xu, Zhe; Perez, Victor; Wang, Jianhua

    2014-01-01

    Purpose To determine the vertical and horizontal thickness profiles of the corneal epithelium in vivo using ultra-long scan depth and ultra-high resolution spectral domain optical coherence tomography (SD-OCT). Methods A SD-OCT was developed with an axial resolution of ∼3.3 µm in tissue and an extended scan depth. Forty-two eyes of 21 subjects were imaged twice. The entire horizontal and vertical corneal epithelial thickness profiles were evaluated. The coefficient of repeatability (CoR) and intraclass correlation (ICC) of the tests and interobserver variability were analyzed. Results The full width of the horizontal epithelium was detected, whereas part of the superior epithelium was not shown for the covered super eyelid. The mean central epithelial corneal thickness was 52.0±3.2 µm for the first measurement and 52.3±3.4 µm for the second measurement (P>.05). In the central zone (0–3.0 mm), the paracentral zones (3.0–6.0 mm) and the peripheral zones (6.0–10.0 mm), the mean epithelial thickness ranged from 51 to 53 µm, 52 to 57 µm, and 58 to 72 µm, respectively. There was no difference between the two tests at both meridians and in the right and left eyes (P>.05). The ICCs of the two tests ranged from 0.70 to 0.97 and the CoRs ranged from 2.5 µm to 7.8 µm from the center to the periphery, corresponding to 5.6% to 10.6% (CoR%). The ICCs of the two observers ranged from 0.72 to 0.93 and the CoRs ranged from 4.5 µm to 10.4 µm from the center to the periphery, corresponding to 8.7% to 15.2% (CoR%). Conclusions This study demonstrated good repeatability of ultra-high resolution and long scan depth SD-OCT to evaluate the entire thickness profiles of the corneal epithelium. The epithelial thickness increases from the center toward the limbus. PMID:24844566

  19. Technical Note: Skin thickness measurements using high-resolution flat-panel cone-beam dedicated breast CT

    SciTech Connect

    Shi Linxi; Vedantham, Srinivasan; Karellas, Andrew; O'Connell, Avice M.

    2013-03-15

    Purpose: To determine the mean and range of location-averaged breast skin thickness using high-resolution dedicated breast CT for use in Monte Carlo-based estimation of normalized glandular dose coefficients. Methods: This study retrospectively analyzed image data from a clinical study investigating dedicated breast CT. An algorithm similar to that described by Huang et al.['The effect of skin thickness determined using breast CT on mammographic dosimetry,' Med. Phys. 35(4), 1199-1206 (2008)] was used to determine the skin thickness in 137 dedicated breast CT volumes from 136 women. The location-averaged mean breast skin thickness for each breast was estimated and the study population mean and range were determined. Pathology results were available for 132 women, and were used to investigate if the distribution of location-averaged mean breast skin thickness varied with pathology. The effect of surface fitting to account for breast curvature was also studied. Results: The study mean ({+-} interbreast SD) for breast skin thickness was 1.44 {+-} 0.25 mm (range: 0.87-2.34 mm), which was in excellent agreement with Huang et al. Based on pathology, pair-wise statistical analysis (Mann-Whitney test) indicated that at the 0.05 significance level, there were no significant difference in the location-averaged mean breast skin thickness distributions between the groups: benign vs malignant (p= 0.223), benign vs hyperplasia (p= 0.651), hyperplasia vs malignant (p= 0.229), and malignant vs nonmalignant (p= 0.172). Conclusions: Considering this study used a different clinical prototype system, and the study participants were from a different geographical location, the observed agreement between the two studies suggests that the choice of 1.45 mm thick skin layer comprising the epidermis and the dermis for breast dosimetry is appropriate. While some benign and malignant conditions could cause skin thickening, in this study cohort the location-averaged mean breast skin thickness

  20. High-resolution secondary reconstructions with the use of flat panel CT in the clinical assessment of patients with cochlear implants.

    PubMed

    Pearl, M S; Roy, A; Limb, C J

    2014-06-01

    Radiologic assessment of cochlear implants can be limited because of metallic streak artifacts and the high attenuation of the temporal bones. We report on 14 patients with 18 cochlear implants (17 Med-El standard 31.5-mm arrays, 1 Med-El medium 24-mm array) who underwent flat panel CT with the use of high-resolution secondary reconstruction techniques. Flat panel CT depicted the insertion site, cochlear implant course, and all 216 individual electrode contacts. The calculated mean angular insertion depth for standard arrays was 591.9° (SD = 70.9; range, 280°). High-resolution secondary reconstructions of the initial flat panel CT dataset, by use of a manually generated field of view, Hounsfield unit kernel type, and sharp image characteristics, provided high-quality images with improved spatial resolution. Flat panel CT is a promising imaging tool for the postoperative evaluation of cochlear implant placement. PMID:24371026

  1. HIGH RESOLUTION AND FAST SCANNING SQUID BASED NON-DESTRUCTIVE INSPECTION SYSTEM OF NIOBIUM SHEETS FOR SRF CAVITIES

    SciTech Connect

    SHU, QUAN-SHENG

    2008-06-08

    Applications in high energy physics accelerators and other fields require the use of thousands of superconducting RF (SRF) cavities that are made of high purity Nb material and the purity of niobium is critical for these cavities to reach the highest accelerating fields. Tantalum is the most prolific of metal inclusions, which can cause thermal breakdown and prevent the cavities from reaching their theoretical performance limits of 45-50 MV/m, and DOE Labs are searching for a technology that could detect small impurities in superconducting Nb sheets reaching the highest possible accelerating fields. The proposed innovative SQUID-based Nondestructive system can scan Niobium sheets used in the manufacturing of SRF cavities with both high speed and high resolution. A highly sensitive SQUID system with a gradiometer probe, non-magnetic dewar, data acquisition system, and a scanning system will be developed for fast detection of impurities in planar Nb sheets. In phase I, we will modify our existing SQUID-based eddy current system to detect 100 micron size Ta defects and a great effort will focus on achieving fast scanning of a large number of niobium sheets in a shorter time and with reasonable resolution. An older system operated by moving the sample 1 mm, stopping and waiting for 1-2 seconds, then activating a measurement by the SQUID after the short settle time is modified. A preliminary designed and implemented a SQUID scanning system that is fast and is capable of scanning a 30 cm x 30 cm Nb sheet in 15 minutes by continuously moving the table at speeds up to 10 mm/s while activating the SQUID at 1mm interval is modified and reached the Phase I goal of 100mm resolution. We have successfully demonstrated the feasibility that a fast speed SQUID scanner without sacrificing the resolution of detection can be done, and a data acquisition and analysis system is also preliminary developed. The SQUID based scanner will help reach the highest accelerating field in SRF

  2. Exploring miniature insect brains using micro-CT scanning techniques.

    PubMed

    Smith, Dylan B; Bernhardt, Galina; Raine, Nigel E; Abel, Richard L; Sykes, Dan; Ahmed, Farah; Pedroso, Inti; Gill, Richard J

    2016-01-01

    The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures. PMID:26908205

  3. Exploring miniature insect brains using micro-CT scanning techniques

    PubMed Central

    Smith, Dylan B.; Bernhardt, Galina; Raine, Nigel E.; Abel, Richard L.; Sykes, Dan; Ahmed, Farah; Pedroso, Inti; Gill, Richard J.

    2016-01-01

    The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures. PMID:26908205

  4. 3D Assessment of Cortical Bone Porosity and Tissue Mineral Density Using High-Resolution Micro-CT: Effects of Resolution and Threshold Method

    PubMed Central

    Palacio-Mancheno, Paolo E.; Larriera, Adriana I.; Doty, Stephen B.; Cardoso, Luis; Fritton, Susannah P.

    2013-01-01

    Current micro-CT systems allow scanning bone at resolutions capable of three-dimensional characterization of intracortical vascular porosity and osteocyte lacunae. However, the scanning and reconstruction parameters along with the image segmentation method affect the accuracy of the measurements. In this study, the effects of scanning resolution and image threshold method in quantifying small features of cortical bone (vascular porosity, vascular canal diameter and separation, lacunar porosity and density, and tissue mineral density) were analyzed. Cortical bone from the tibia of Sprague-Dawley rats was scanned at 1-µm and 4-µm resolutions, reconstructions were density-calibrated, and volumes of interest were segmented using approaches based on edge-detection or histogram analysis. With 1-µm resolution scans, the osteocyte lacunar spaces could be visualized, and it was possible to separate the lacunar porosity from the vascular porosity. At 4-µm resolution, the vascular porosity and vascular canal diameter were underestimated, and osteocyte lacunae were not effectively detected, whereas the vascular canal separation and tissue mineral density were overestimated compared to 1-µm resolution. Resolution had a much greater effect on the measurements than did threshold method, with partial volume effects at resolutions coarser than 2 µm demonstrated in two separate analyses, one of which assessed the effect of resolution on an object of known size with similar architecture to a vascular pore. Although there was little difference when using the edge-detection versus histogram-based threshold approaches, edge-detection was somewhat more effective in delineating canal architecture at finer resolutions (1 – 2 µm). In addition, use of a high-resolution (1-µm) density-based threshold on lower resolution (4-µm) density-calibrated images was not effective in improving the lower-resolution measurements. In conclusion, if measuring cortical vascular microarchitecture

  5. Efficient cross-section preparation method for high-resolution imaging of hard polymer composites with a scanning electron microscope.

    PubMed

    Brodusch, N; Yourdkhani, M; Hubert, P; Gauvin, R

    2015-11-01

    Characterization of distribution and arrangement of filler particles in polymer composites is of primary importance to understand and maximize their mechanical, electrical and thermal properties. An innovative procedure that allows reliable and straightforward preparation of cross-sections of polymer composites with the use of mechanical polishing, ion beam etching and soft gaseous etching is presented in this paper. Because of the inherent difference between the organic amorphous matrix and the inorganic crystalline nature of composite fillers, the removal of matrix layers at the surface of the cross-section at the expense of the inorganic materials allowed characterizing the composite filler particles structure and distribution over the surface. Since beam broadening did not occur before the beam hit the nanoparticles, high-resolution imaging in the scanning electron microscope was possible and true dimensions and orientation of the particles were observed. This provided more flexibility in selecting the primary beam voltage; especially, the use of low beam energy greatly improved the image contrast and reduced charging effects resulting from the primary electron beam bombardment. It was shown that only polymers with a carbonated main chain could be etched selectively by the gaseous etching process. PMID:26098996

  6. Creation of High Resolution Terrain Models of Barringer Meteorite Crater (Meteor Crater) Using Photogrammetry and Terrestrial Laser Scanning Methods

    NASA Technical Reports Server (NTRS)

    Brown, Richard B.; Navard, Andrew R.; Holland, Donald E.; McKellip, Rodney D.; Brannon, David P.

    2010-01-01

    Barringer Meteorite Crater or Meteor Crater, AZ, has been a site of high interest for lunar and Mars analog crater and terrain studies since the early days of the Apollo-Saturn program. It continues to be a site of exceptional interest to lunar, Mars, and other planetary crater and impact analog studies because of its relatively young age (est. 50 thousand years) and well-preserved structure. High resolution (2 meter to 1 decimeter) digital terrain models of Meteor Crater in whole or in part were created at NASA Stennis Space Center to support several lunar surface analog modeling activities using photogrammetric and ground based laser scanning techniques. The dataset created by this activity provides new and highly accurate 3D models of the inside slope of the crater as well as the downslope rock distribution of the western ejecta field. The data are presented to the science community for possible use in furthering studies of Meteor Crater and impact craters in general as well as its current near term lunar exploration use in providing a beneficial test model for lunar surface analog modeling and surface operation studies.

  7. Using a geographic information system and scanning technology to create high-resolution land-use data sets

    USGS Publications Warehouse

    Harvey, Craig A.; Kolpin, Dana W.; Battaglin, William A.

    1996-01-01

    A geographic information system (GIS) procedure was developed to compile low-altitude aerial photography, digitized data, and land-use data from U.S. Department of Agriculture Consolidated Farm Service Agency (CFSA) offices into a high-resolution (approximately 5 meters) land-use GIS data set. The aerial photography consisted of 35-mm slides which were scanned into tagged information file format (TIFF) images. These TIFF images were then imported into the GIS where they were registered into a geographically referenced coordinate system. Boundaries between land use were delineated from these GIS data sets using on-screen digitizing techniques. Crop types were determined using information obtained from the U.S. Department of Agriculture CFSA offices. Crop information not supplied by the CFSA was attributed by manual classification procedures. Automated methods to provide delineation of the field boundaries and land-use classification were investigated. It was determined that using these data sources, automated methods were less efficient and accurate than manual methods of delineating field boundaries and classifying land use.

  8. High-resolution Terrestrial Laser Scanning (TLS) on cushion peatlands - a case study from the Peruvian Andes

    NASA Astrophysics Data System (ADS)

    Forbriger, M.; Höfle, B.; Siart, C.; Schittek, K.; Bubenzer, O.

    2012-04-01

    So-called cushion peatlands located in the high mountain areas of the Peruvian Andes are unique ecotopes, which are of major importance for both palaeoenvironmental reconstructions and permanent water supply of the valley oases in the presently hyperarid Peruvian desert. In this context, a case study was performed on the Cerro Llamoca peatland (southern Peru, province Lucanas, 14° S) in the uppermost reaches of the Rió Grande catchment area (4000-4450 m a.s.l.) within the framework of the BMBF-funded project 'Andean Transect - Climate Sensitivity of pre-Columbian Man-Environment-Systems' and serves as a basis for a long-term, multitemporal observation study. As small-scale geomorphologic investigations require high-resolution elevation data, which is still not available for this remote study site, and local microrelief is characterised by features not visible from aerial view (e.g. channel cuttings within the peatland), terrestrial laser scanning (TLS) was applied. Data acquisition was carried out with one of the latest 'time-of-flight'-scanners (Riegl VZ-400). A total of 46 positions was recorded to capture the whole area of interest leading to more 370 million single laser points within an area of approximately 1,8 km2. Registration of scan positions was performed by means of GPS measurements, coarse registration and the iterative closest point (ICP) algorithm provided by the plugin Multi-Station Adjustment within the RiSCAN PRO software (Riegl). The large amount of output data required the use of special LiDAR software for further processing and digital elevation raster generation (OPALS software). The defined target raster resolution was set to values between 0.1 and 2 m depending on the average point density. It is important to have access to the original point cloud including additional laser point attributes (e.g. signal amplitude and echo width) for digital terrain model generation (i.e. terrain point filtering) and geomorphologic mapping by means of

  9. High-resolution CT by diffraction-enhanced x-ray imaging: mapping of breast tissue samples and comparison with their histo-pathology.

    PubMed

    Bravin, Alberto; Keyriläinen, Jani; Fernández, Manuel; Fiedler, Stefan; Nemoz, Christian; Karjalainen-Lindsberg, Marja-Liisa; Tenhunen, Mikko; Virkkunen, Pekka; Leidenius, Marjut; von Smitten, Karl; Sipilä, Petri; Suortti, Pekka

    2007-04-21

    The aim of this study was to introduce high-resolution computed tomography (CT) of breast tumours using the diffraction-enhanced x-ray imaging (DEI) technique and to compare results with radiological and histo-pathological examinations. X-ray CT images of tumour-bearing breast tissue samples were acquired by monochromatic synchrotron radiation (SR). Due to the narrow beam and a large sample-to-detector distance scattering is rejected in the absorption contrast images (SR-CT). Large contrast enhancement is achieved by the use of the DEI-CT method, where the effects of refraction and scatter rejection are analysed by crystal optics. Clinical mammograms and CT images were recorded as reference material for a radiological examination. Three malignant and benign samples were studied in detail. Their radiographs were compared with optical images of stained histological sections. The DEI-CT images map accurately the morphology of the samples, including collagen strands and micro-calcifications of dimensions less than 0.1 mm. Histo-pathological examination and reading of the radiographs were done independently, and the conclusions were in general agreement. High-resolution DEI-CT images show strong contrast and permit visualization of details invisible in clinical radiographs. The radiation dose may be reduced by an order of magnitude without compromising image quality, which would make possible clinical in vivo DEI-CT with future compact SR sources. PMID:17404464

  10. Multimodal imaging of the human temporal bone: A comparison of CT and optical scanning techniques

    NASA Astrophysics Data System (ADS)

    Voie, Arne H.; Whiting, Bruce; Skinner, Margaret; Neely, J. Gail; Lee, Kenneth; Holden, Tim; Brunsden, Barry

    2003-10-01

    A collaborative effort between Washington University in St. Louis and Spencer Technologies in Seattle, WA has been undertaken to create a multimodal 3D reconstruction of the human cochlea and vestibular system. The goal of this project is to improve the accuracy of in vivo CT reconstructions of implanted cochleae, and to expand the knowledge of high-resolution anatomical detail provided by orthogonal-plane optical sectioning (OPFOS). At WUSL, computed tomography (CT) images of the cochlea are used to determine the position of cochlear implant electrodes relative to target auditory neurons. The cochlear implant position is determined using pre- and post-operative CT scans. The CT volumes are cross-registered to align the semicircular canals and internal auditory canal, which have a unique configuration in 3-D space. The head of a human body donor was scanned with a clinical CT device, after which the temporal bones were removed, fixed in formalin and trimmed prior to scanning with a laboratory Micro CT scanner. Following CT, the temporal bones were sent to the OPFOS Imaging Lab at Spencer Technologies for a further analysis. 3-D reconstructions of CT and OPFOS imaging modalities were compared, and results are presented. [Work supported by NIDCD Grants R44-03623-5 and R01-00581-13.

  11. [Fundamental study of helical scanning CT--evaluation of spatial resolution in the longitudinal axis].

    PubMed

    Anno, H; Katada, K; Tsujioka, K; Ida, Y; Ohashi, I; Takeuchi, A; Koga, S

    1992-11-25

    We evaluated spatial resolution in the longitudinal axis with helical scanning CT using a fourth-generation fast CT scanner. We made a phantom by stringing acrylic balls (65 mm phi x 8 and 9 mm phi x 6). The acquired images were processed by MPR and assessed visually to evaluate axis resolution. With the conventional scanning method, the partial volume effect varied with the starting position, but helical scanning was able to reconstruct high-resolution images using continuous raw data. During helical scanning, axis resolution varied depending on the slice width and sliding speed of the couch top. Even if the sliding speed was kept constant at 4 mm/sec, axis resolution was superior with a slice width of 2 mm than with one of 5 mm. PMID:1465334

  12. Tomosynthesis using high speed CT scanning system

    SciTech Connect

    Boyd, D.P.; Rutt, B.K.

    1988-04-05

    In a high-speed CT scanning system in which fan beams of radiation are generated by sweeping an electron beam along a target and collimated X-rays emitted by the target are received by an array of detectors after passing through a patient area between the target and the array of detectors, a method of obtaining a tomograph of a patient is described comprising the steps of sweeping the electron beam along the target, measuring radiation received at detector positions as the electron beam is swept along the target; moving the patient past the collimated X-rays, and combining measurements at the detector positions as correlated in time to positions of the patient and tomosynthesizing the tomograph from data for lines in the desired plane for the positions of the patient.

  13. Real-time Data Processing and Visualization for the Airborne Scanning High-resolution Interferometer Sounder (S-HIS)

    NASA Astrophysics Data System (ADS)

    Taylor, J. K.; Revercomb, H. E.; Hoese, D.; Garcia, R. K.; Smith, W. L.; Weisz, E.; Tobin, D. C.; Best, F. A.; Knuteson, R. O.; Sullivan, D. V.; Barnes, C. M.; Van Gilst, D. P.

    2015-12-01

    The Hurricane and Severe Storm Sentinel (HS3) is a five-year NASA mission targeted to enhance the understanding of the formation and evolution of hurricanes in the Atlantic basin. Measurements were made from two NASA Global Hawk Unmanned Aircraft Systems (UAS) during the 2012 through 2014 hurricane seasons, with flights conducted from the NASA Wallops Flight Facility. The Global Hawk aircraft are capable of high altitude flights with durations of up to 30 hours, which allow extensive observations over distant storms, not typically possible with manned aircraft. The two NASA Global Hawks were equipped with instrument suites to study the storm environment, and inner core structure and processes, respectively. The Scanning High-resolution Interferometer Sounder (S-HIS), designed and built by the University of Wisconsin (UW) Space Science and Engineering Center (SSEC), measures emitted thermal radiation at high spectral resolution between 3.3 and 18 microns. The radiance measurements are used to obtain temperature and water vapor profiles of the Earth's atmosphere. The S-HIS spatial resolution is 2 km at nadir, across a 40 km ground swath from a nominal altitude of 20 kilometers. Since 1998, the S-HIS has participated in 33 field campaigns and has proven to be extremely dependable, effective, and highly accurate. It has flown on the NASA ER-2, DC-8, Proteus, WB-57, and Global Hawk airborne platforms. The UW S-HIS infrared sounder instrument is equipped with a real-time ground data processing system capable of delivering atmospheric profiles, radiance data, and engineering status to mission support scientists - all within less than one minute from the time of observation. This ground data processing system was assembled by a small team using existing software and proven practical techniques similar to a satellite ground system architecture. This summary outlines the design overview for the system and illustrates the data path, content, and outcomes.

  14. Multifrequency Ultra-High Resolution Miniature Scanning Microscope Using Microchannel And Solid-State Sensor Technologies And Method For Scanning Samples

    NASA Technical Reports Server (NTRS)

    Wang, Yu (Inventor)

    2006-01-01

    A miniature, ultra-high resolution, and color scanning microscope using microchannel and solid-state technology that does not require focus adjustment. One embodiment includes a source of collimated radiant energy for illuminating a sample, a plurality of narrow angle filters comprising a microchannel structure to permit the passage of only unscattered radiant energy through the microchannels with some portion of the radiant energy entering the microchannels from the sample, a solid-state sensor array attached to the microchannel structure, the microchannels being aligned with an element of the solid-state sensor array, that portion of the radiant energy entering the microchannels parallel to the microchannel walls travels to the sensor element generating an electrical signal from which an image is reconstructed by an external device, and a moving element for movement of the microchannel structure relative to the sample. Discloses a method for scanning samples whereby the sensor array elements trace parallel paths that are arbitrarily close to the parallel paths traced by other elements of the array.

  15. UT-CT: A National Resource for Applications of High-Resolution X-ray Computed Tomography in the Geological Sciences

    NASA Astrophysics Data System (ADS)

    Carlson, W. D.; Ketcham, R. A.; Rowe, T. B.

    2002-12-01

    An NSF-sponsored (EAR-IF) shared multi-user facility dedicated to research applications of high-resolution X-ray computed tomography (CT) in the geological sciences has been in operation since 1997 at the University of Texas at Austin. The centerpiece of the facility is an industrial CT scanner custom-designed for geological applications. Because the instrument can optimize trade-offs among penetrating ability, spatial resolution, density discrimination, imaging modes, and scan times, it can image a very broad range of geological specimens and materials, and thus offers significant advantages over medical scanners and desktop microtomographs. Two tungsten-target X-ray sources (200-kV microfocal and 420-kV) and three X-ray detectors (image-intensifier, high-sensitivity cadmium tungstate linear array, and high-resolution gadolinium-oxysulfide radiographic line scanner) can be used in various combinations to meet specific imaging goals. Further flexibility is provided by multiple imaging modes: second-generation (translate-rotate), third-generation (rotate-only; centered and variably offset), and cone-beam (volume CT). The instrument can accommodate specimens as small as about 1 mm on a side, and as large as 0.5 m in diameter and 1.5 m tall. Applications in petrology and structural geology include measuring crystal sizes and locations to identify mechanisms governing the kinetics of metamorphic reactions; visualizing relationships between alteration zones and abundant macrodiamonds in Siberian eclogites to elucidate metasomatic processes in the mantle; characterizing morphologies of spiral inclusion trails in garnet to test hypotheses of porphyroblast rotation during growth; measuring vesicle size distributions in basaltic flows for determination of elevation at the time of eruption to constrain timing and rates of continental uplift; analysis of the geometry, connectivity, and tortuosity of migmatite leucosomes to define the topology of melt flow paths, for numerical

  16. Influence of scan setting selections on root canal visibility with cone beam CT

    PubMed Central

    Hassan, BA; Payam, J; Juyanda, B; van der Stelt, P; Wesselink, PR

    2012-01-01

    Objectives The aim of this study was to assess the influence of scan setting selection, including field of view (FOV) ranging from small to large, number of projections and scan modes on the visibility of the root canal with cone beam CT (CBCT). Methods One human mandible cadaver was scanned with CBCT (Accuitomo 170; J Morita MPG Corp., Kyoto, Japan) using six different FOVs (4×4 cm, 6×6 cm, 8×8 cm, 10×10 cm, 14×10 cm and 17×12 cm) with either 360 or 180 projections in standard and high resolution. The right canine was selected for evaluation. Ten observers independently assessed the visibility of the canal space and overall image quality on a five-point scale. Results The results indicate that both selections of FOV and number of projections have significant influence on root canal visibility (p = 0.0001), whereas scan mode, whether standard or high resolution, was less relevant (p = 0.34). Conclusions The smallest FOV available should always be used for endodontic applications, and it is not recommended to reduce the number of projections to 180. Using the standard scan mode instead of high resolution does not negatively influence the visibility of the root canal space and is therefore recommended. PMID:23166361

  17. High-resolution room-temperature sample scanning superconducting quantum interference device microscope configurable for geological and biomagnetic applications

    SciTech Connect

    Fong, L.E.; Holzer, J.R.; McBride, K.K.; Lima, E.A.; Baudenbacher, F.; Radparvar, M.

    2005-05-15

    We have developed a scanning superconducting quantum interference device (SQUID) microscope system with interchangeable sensor configurations for imaging magnetic fields of room-temperature (RT) samples with submillimeter resolution. The low-critical-temperature (T{sub c}) niobium-based monolithic SQUID sensors are mounted on the tip of a sapphire and thermally anchored to the helium reservoir. A 25 {mu}m sapphire window separates the vacuum space from the RT sample. A positioning mechanism allows us to adjust the sample-to-sensor spacing from the top of the Dewar. We achieved a sensor-to-sample spacing of 100 {mu}m, which could be maintained for periods of up to four weeks. Different SQUID sensor designs are necessary to achieve the best combination of spatial resolution and field sensitivity for a given source configuration. For imaging thin sections of geological samples, we used a custom-designed monolithic low-T{sub c} niobium bare SQUID sensor, with an effective diameter of 80 {mu}m, and achieved a field sensitivity of 1.5 pT/Hz{sup 1/2} and a magnetic moment sensitivity of 5.4x10{sup -18} A m{sup 2}/Hz{sup 1/2} at a sensor-to-sample spacing of 100 {mu}m in the white noise region for frequencies above 100 Hz. Imaging action currents in cardiac tissue requires a higher field sensitivity, which can only be achieved by compromising spatial resolution. We developed a monolithic low-T{sub c} niobium multiloop SQUID sensor, with sensor sizes ranging from 250 {mu}m to 1 mm, and achieved sensitivities of 480-180 fT/Hz{sup 1/2} in the white noise region for frequencies above 100 Hz, respectively. For all sensor configurations, the spatial resolution was comparable to the effective diameter and limited by the sensor-to-sample spacing. Spatial registration allowed us to compare high-resolution images of magnetic fields associated with action currents and optical recordings of transmembrane potentials to study the bidomain nature of cardiac tissue or to match petrography

  18. Fibroproliferative changes on high-resolution CT in the acute respiratory distress syndrome predict mortality and ventilator dependency: a prospective observational cohort study

    PubMed Central

    Muranaka, Hiroyuki; Gushima, Yasuhiro; Kotani, Toru; Nader, Habashi M; Fujimoto, Kiminori; Johkoh, Takeshi; Iwamoto, Norihiro; Kawamura, Kodai; Nagano, Junji; Fukuda, Koichiro; Hirata, Naomi; Yoshinaga, Takeshi; Ichiyasu, Hidenori; Tsumura, Shinsuke; Kohrogi, Hirotsugu; Kawaguchi, Atsushi; Yoshioka, Masakazu; Sakuma, Tsutomu; Suga, Moritaka

    2012-01-01

    Objectives To examine whether the extent of fibroproliferative changes on high-resolution CT (HRCT) scan influences prognosis, ventilator dependency and the associated outcomes in patients with early acute respiratory distress syndrome (ARDS). Design A prospective observational cohort study. Setting Intensive care unit in a teaching hospital. Participants 85 patients with ARDS who met American-European Consensus Conference Criteria and eligible criteria. Interventions HRCT scans were performed and prospectively evaluated by two independent observers on the day of diagnosis and graded into six findings according to the extent of fibroproliferation. An overall HRCT score was obtained by previously published method. Primary and secondary outcomes The primary outcome was 60-day mortality. Secondary outcomes included the number of ventilator-free days, organ failure-free days, the incidence of barotraumas and the occurrence of ventilator-associated pneumonia. Results Higher HRCT scores were associated with statistically significant decreases in organ failure-free days as well as ventilator-free days. Multivariate Cox proportional hazards model showed that the HRCT score remained an independent risk factor for mortality (HR 1.20; 95% CI 1.06 to 1.36; p=0.005). Multivariate analysis also revealed that the CT score had predictive value for ventilator weaning within 28 days (OR 0.63; 95% CI 0.48 to 0.82; p=0.0006) as well as for an incidence of barotraumas (OR 1.61; 95% CI 1.08 to 2.38; p=0.018) and for an occurrence of ventilator-associated pneumonia (OR 1.46; 95% CI 1.13 to 1.89; p=0.004). A HRCT score <210 enabled prediction of 60-day survival with 71% sensitivity and 72% specificity and of ventilator-weaning within 28 days with 75% sensitivity and 76% specificity. Conclusions Pulmonary fibroproliferation assessed by HRCT in patients with early ARDS predicts increased mortality with an increased susceptibility to multiple organ failure, including ventilator

  19. Iodine-131 treatment and high-resolution CT: results in patients with lung metastases from differentiated thyroid carcinoma.

    PubMed

    Ilgan, Seyfettin; Karacalioglu, A Ozgur; Pabuscu, Yuksel; Atac, G Kaan; Arslan, Nuri; Ozturk, Emel; Gunalp, Bengul; Ozguven, M Ali

    2004-06-01

    Between 1984 and 2002, pulmonary metastases were detected in 42 (4%) out of 1,023 patients with differentiated thyroid carcinoma (DTC) in our department. The age at diagnosis ranged from 6 to 77 years. Lung metastases were diagnosed by both increased thyroglobulin (Tg) levels and positive uptake of iodine-131 on scans, and/or positive radiological findings. The primary tumours were histologically classified as papillary (30 patients), follicular (nine patients) and poorly differentiated (two tall cell, one insular carcinoma). The duration of follow-up ranged from 24 to 228 months. The end-results of the (131)I therapy were evaluated. The treatment of choice was (131)I therapy of metastases after total thyroidectomy plus lymph node dissection (if lymph node metastases were present). Applied single and total (131)I activities were 1.8-10.4 GBq and 5.5-43.7 GBq, respectively. Lung metastases were present at the time of diagnosis in 30 patients and developed during the follow-up period in the remaining 12. Twelve patients with extensive metastases died of thyroid carcinoma and another died due to secondary malignancy (malignant mesothelioma). Ten patients with lung metastases remain completely free of disease and are probably cured, while another seven were stable at the time of study. Three- and five-year survival rates were 86% (36/42) and 76% (32/42), respectively. To define the diagnostic value of high-resolution computed tomography (HRCT) and identify the distinctive features of lung metastases from DTC, 22 patients were further examined with HRCT within 2 weeks of the initial diagnosis of lung metastases and the results were compared with chest X-ray findings. HRCT detected metastases in 10 out of 14 patients with a normal chest X-ray and confirmed metastases in all patients with positive (n=5) and suspicious (n=3) chest X-ray. HRCT did not show any abnormalities in four patients with positive lung uptake on (131)I whole-body images. Stage of disease, existence

  20. High-Resolution Micro-CT for Morphologic and Quantitative Assessment of the Sinusoid in Human Cavernous Hemangioma of the Liver

    PubMed Central

    Duan, Jinghao; Hu, Chunhong; Chen, Hua

    2013-01-01

    Hepatic sinusoid plays a vital role in human cavernous hemangioma of the liver (CHL), and its morphologic investigation facilitates the understanding of microcirculation mechanism and pathological change of CHL. However, precise anatomical view of the hepatic sinusoid has been limited by the resolution and contrast available from existing imaging techniques. While liver biopsy has traditionally been the reliable method for the assessment of hepatic sinusoids, the invasiveness and sampling error are its inherent limitations. In this study, imaging of CHL samples was performed using in-line phase-contrast imaging (ILPCI) technique with synchrotron radiation. ILPCI allowed clear visualization of soft tissues and revealed structural details that were invisible to conventional radiography. Combining the computed tomography (CT) technique, ILPCI-CT was used to acquire the high-resolution micro-CT images of CHL, and three dimensional (3D) microstructures of hepatic sinusoids were provided for the morphologic depiction and quantitative assessment. Our study demonstrated that ILPCI-CT could substantially improve the radiographic contrast of CHL tissues in vitro with no contrast agent. ILPCI-CT yielded high-resolution micro-CT image of CHL sample at the micron scale, corresponding to information on actual structures revealed at histological section. The 3D visualization provided an excellent view of the hepatic sinusoid. The accurate view of individual hepatic sinusoid was achieved. The valuable morphological parameters of hepatic sinusoids, such as thrombi, diameters, surface areas and volumes, were measured. These parameters were of great importance in the evaluation of CHL, and they provided quantitative descriptors that characterized anatomical properties and pathological features of hepatic sinusoids. The results highlight the high degree of sensitivity of the ILPCI-CT technique and demonstrate the feasibility of accurate visualization of hepatic sinusoids. Moreover

  1. Temporal Variations in the Roughness of Eroding River Banks Revealed by High-Resolution Digital Photogrammetry and Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Darby, S. E.; Leyland, J.; Rinaldi, M.; Teruggi, L.; Ostuni, D.

    2010-12-01

    of the roughness is approximated as a series of user defined Gaussian functions, with the skin drag component characterised by the deviation of points from the fitted curves. In our study these bank ‘roughness profiles’ are extracted from an annual series (2003-present) of high-resolution DEMs of the river bank, the latter being constructed either through digital photogrammetry or terrestrial laser scanning surveys. The DEMs are used to quantify accurately the spatial trends and amounts of annual bank erosion observed in relation to the hydrological regime of the river, and are compared to the temporal variations in river bank form and skin roughness components as the bank erodes. The data are used to evaluate the extent to which there is a dynamic feedback between the bank erosion process and bank form roughness.

  2. Direct Observation of Iron-Induced Conformational Changes of Mitochondrial DNA by High-Resolution Field-Emission in-Lens Scanning Electron Microscopy

    NASA Astrophysics Data System (ADS)

    Yaffee, Marcus; Walter, Patrick; Richter, Christoph; Muller, Martin

    1996-05-01

    When respiring rat liver mitochondria are incubated in the presence of Fe(III) gluconate, their DNA (mtDNA) relaxes from the supercoiled to the open circular form dependent on the iron dose. Anaerobiosis or antioxidants fail to completely inhibit the unwinding. High-resolution field-emission in-lens scanning electron microscopy imaging, in concert with backscattered electron detection, pinpoints nanometer-range iron colloids bound to mtDNA isolated from iron-exposed mitochondria. High-resolution field-emission in-lens scanning electron microscopy with backscattered electron detection imaging permits simultaneous detailed visual analysis of DNA topology, iron dose-dependent mtDNA unwinding, and assessment of iron colloid formation on mtDNA strands.

  3. Three-dimensional analysis of vesicle and crystal fragment textures in pumice using high-resolution X-ray CT: Textural evidence of eruptive processes

    NASA Astrophysics Data System (ADS)

    Ketcham, R. A.; Gardner, J. E.; Abbott, S.

    2011-12-01

    Three-dimensional analysis of high-resolution X-ray computed tomographic (CT) imagery of pumice from Popocatépetl Volcano in central Mexico yields fresh insights into processes of vesicle formation and coalescence and crystal fragmentation that occur during explosive volcanism. Six ~2 cm pumice fragments of varying bulk vesicularity were imaged at ~20 μm resolution. Three-dimensional blob and fabric analysis quantitatively document textural features, and visualization facilitated contextualization of measurements and overall interpretation. Vesicles range in size from mm-scale to below the resolution of the scan data. By comparing the whole-sample 3D vesicle size distributions derived from CT with more detailed distributions from sub-volumes obtained by standard petrographic analysis, we can discern two distinct, roughly log-normal populations in each sample. Vesicles in all samples have preferred orientations, and fabric analysis based on the star volume distribution and displayed as 3D rose diagrams documents a range of preferred shapes from elongate to flattened. Aspect ratios range from 1 to 6, and converge to values of ~2-3 with increasing size. Surface to volume ratios show increasing departure from sphericity with increasing size, which is probably attributable in large part to irregular shapes caused by coalescence. The vesicle fabric was strongest in the highest-vesicularity sample. Some pumices showed evidence of welding or poor mixing between two or more differently devolatilized portions of melt. Interfaces are in some cases apparently welded, with low-vesicularity glass contact zones, and in others are simply sub-planar intersections between distinct glasses. In one instance of the latter, correlated vesicle and phenocryst orientations across both melt portions and not parallel to their interface suggests that their juxtaposition took place before final eruption, while there was still time for fabric development. The pumices show abundant evidence of

  4. Automated segmentation of the lungs from high resolution CT images for quantitative study of chronic obstructive pulmonary diseases

    NASA Astrophysics Data System (ADS)

    Garg, Ishita; Karwoski, Ronald A.; Camp, Jon J.; Bartholmai, Brian J.; Robb, Richard A.

    2005-04-01

    Chronic obstructive pulmonary diseases (COPD) are debilitating conditions of the lung and are the fourth leading cause of death in the United States. Early diagnosis is critical for timely intervention and effective treatment. The ability to quantify particular imaging features of specific pathology and accurately assess progression or response to treatment with current imaging tools is relatively poor. The goal of this project was to develop automated segmentation techniques that would be clinically useful as computer assisted diagnostic tools for COPD. The lungs were segmented using an optimized segmentation threshold and the trachea was segmented using a fixed threshold characteristic of air. The segmented images were smoothed by a morphological close operation using spherical elements of different sizes. The results were compared to other segmentation approaches using an optimized threshold to segment the trachea. Comparison of the segmentation results from 10 datasets showed that the method of trachea segmentation using a fixed air threshold followed by morphological closing with spherical element of size 23x23x5 yielded the best results. Inclusion of greater number of pulmonary vessels in the lung volume is important for the development of computer assisted diagnostic tools because the physiological changes of COPD can result in quantifiable anatomic changes in pulmonary vessels. Using a fixed threshold to segment the trachea removed airways from the lungs to a better extent as compared to using an optimized threshold. Preliminary measurements gathered from patient"s CT scans suggest that segmented images can be used for accurate analysis of total lung volume and volumes of regional lung parenchyma. Additionally, reproducible segmentation allows for quantification of specific pathologic features, such as lower intensity pixels, which are characteristic of abnormal air spaces in diseases like emphysema.

  5. A detailed comparison of high-resolution paleoclimatic records produced by XRF core scanning to conventional measurements: examples from the Nile and Gallipoli area

    NASA Astrophysics Data System (ADS)

    Hennekam, Rick; Goudeau, Marie-Louise; De Lange, Gert J.

    2014-05-01

    The X-ray fluorescence (XRF) core scan technique is due to its high-sampling resolution, speed, and cost, an attractive tool for paleoceanographic and sedimentological studies. Nevertheless, analytical deviations may occur in such scan data caused by the physical properties of a (wet) sediment surface (i.e. grain size, water film formation under the covering plastic etc.). To elaborate on potential XRF-scan measurement artefacts, we will compare our results from XRF core scan to those from XRF-bead and/or ICP-OES done on parallel samples for several marine cores from the Nile delta and Gallipoli area. We focus on elements, and ratios, often used in high-resolution paleoenvironmental studies of marginal basins. We show that large deviations in XRF core scan results can occur, especially in very water-rich core sections with high interstitial water contents. Subtle variability in water film thickness can cause substantial variability in elemental counts of elements with shallower response depths. These artifacts occur on cm-scales, leading to apparent variability of all elements from Al to Fe on these same scales. To avoid erroneous paleoenvironmental interpretations we show ways of recognizing these effects, as well as possibilities for further amending for these effects. The removal of such erroneous analytical results is essential for the adequate interpretation of in particular high-resolution paleoclimate studies.

  6. Large-Volume Reconstruction of Brain Tissue from High-Resolution Serial Section Images Acquired by SEM-Based Scanning Transmission Electron Microscopy

    PubMed Central

    Kuwajima, Masaaki; Mendenhall, John M.; Harris, Kristen M.

    2013-01-01

    With recent improvements in instrumentation and computational tools, serial section electron microscopy has become increasingly straightforward. A new method for imaging ultrathin serial sections is developed based on a field emission scanning electron microscope fitted with a transmitted electron detector. This method is capable of automatically acquiring high-resolution serial images with a large field size and very little optical and physical distortions. In this chapter, we describe the procedures leading to the generation and analyses of a large-volume stack of high-resolution images (64 μm × 64 μm × 10 μm, or larger, at 2 nm pixel size), including how to obtain large-area serial sections of uniform thickness from well-preserved brain tissue that is rapidly perfusion-fixed with mixed aldehydes, processed with a microwave-enhanced method, and embedded into epoxy resin. PMID:23086880

  7. Helium ion microscopy and ultra-high-resolution scanning electron microscopy analysis of membrane-extracted cells reveals novel characteristics of the cytoskeleton of Giardia intestinalis.

    PubMed

    Gadelha, Ana Paula Rocha; Benchimol, Marlene; de Souza, Wanderley

    2015-06-01

    Giardia intestinalis presents a complex microtubular cytoskeleton formed by specialized structures, such as the adhesive disk, four pairs of flagella, the funis and the median body. The ultrastructural organization of the Giardia cytoskeleton has been analyzed using different microscopic techniques, including high-resolution scanning electron microscopy. Recent advances in scanning microscopy technology have opened a new venue for the characterization of cellular structures and include scanning probe microscopy techniques such as ultra-high-resolution scanning electron microscopy (UHRSEM) and helium ion microscopy (HIM). Here, we studied the organization of the cytoskeleton of G. intestinalis trophozoites using UHRSEM and HIM in membrane-extracted cells. The results revealed a number of new cytoskeletal elements associated with the lateral crest and the dorsal surface of the parasite. The fine structure of the banded collar was also observed. The marginal plates were seen linked to a network of filaments, which were continuous with filaments parallel to the main cell axis. Cytoplasmic filaments that supported the internal structures were seen by the first time. Using anti-actin antibody, we observed a labeling in these filamentous structures. Taken together, these data revealed new surface characteristics of the cytoskeleton of G. intestinalis and may contribute to an improved understanding of the structural organization of trophozoites. PMID:25956335

  8. A scanning, all-fiber Sagnac interferometer for high resolution magneto-optic measurements at 820 nm

    SciTech Connect

    Fried, Alexander; Fejer, Martin; Kapitulnik, Aharon

    2014-10-15

    The Sagnac Interferometer has historically been used for detecting non-reciprocal phenomena, such as rotation. We demonstrate an apparatus in which this technique is employed for high resolution measurements of the Magneto-Optical Polar Kerr effect—a direct indicator of magnetism. Previous designs have incorporated free-space components which are bulky and difficult to align. We improve upon this technique by using all fiber-optic coupled components and demonstrate operation at a new wavelength, 820 nm, with which we can achieve better than 1 μrad resolution. Mounting the system on a piezo-electric scanner allows us to acquire diffraction limited images with 1.5 μm spatial resolution. We also provide extensive discussion on the details and of the Sagnac Interferometer's construction.

  9. (Un)targeted Scanning of Locks of Hair for Drugs of Abuse by Direct Analysis in Real Time-High-Resolution Mass Spectrometry.

    PubMed

    Duvivier, Wilco F; van Putten, Marc R; van Beek, Teris A; Nielen, Michel W F

    2016-02-16

    Forensic hair evidence can be used to obtain retrospective timelines of drug use by analysis of hair segments. However, this is a laborious and time-consuming process, and mass spectrometric (MS) imaging techniques, which show great potential for single-hair targeted analysis, are less useful due to differences in hair growth rate between individual hairs. As an alternative, a fast untargeted analysis method was developed that uses direct analysis in real time-high-resolution mass spectrometry (DART-HRMS) to longitudinally scan intact locks of hair without extensive sample preparation or segmentation. The hair scan method was validated for cocaine against an accredited liquid chromatography/tandem mass spectrometry (LC/MS/MS) method. The detection limit for cocaine in hair was found to comply with the cutoff value of 0.5 ng/mg recommended by the Society of Hair Testing; that is, the DART hair scan method is amenable to forensic cases. Under DART conditions, no significant thermal degradation of cocaine occurred. The standard DART spot size of 5.1 ± 1.1 mm could be improved to 3.3 ± 1.0 mm, corresponding to approximately 10 days of hair growth, by using a high spatial resolution exit cone. By use of data-dependent product ion scans, multiple drugs of abuse could be detected in a single drug user hair scan with confirmation of identity by both exact mass and MS/HRMS fragmentation patterns. Furthermore, full-scan high-resolution data were retrospectively interrogated versus a list of more than 100 compounds and revealed additional hits and temporal profiles in good correlation with reported drug use. PMID:26813807

  10. Self-sensing cantilevers with integrated conductive coaxial tips for high-resolution electrical scanning probe metrology

    NASA Astrophysics Data System (ADS)

    Haemmerli, Alexandre J.; Harjee, Nahid; Koenig, Markus; Garcia, Andrei G. F.; Goldhaber-Gordon, David; Pruitt, Beth L.

    2015-07-01

    The lateral resolution of many electrical scanning probe techniques is limited by the spatial extent of the electrostatic potential profiles produced by their probes. Conventional unshielded conductive atomic force microscopy probes produce broad potential profiles. Shielded probes could offer higher resolution and easier data interpretation in the study of nanostructures. Electrical scanning probe techniques require a method of locating structures of interest, often by mapping surface topography. As the samples studied with these techniques are often photosensitive, the typical laser measurement of cantilever deflection can excite the sample, causing undesirable changes electrical properties. In this work, we present the design, fabrication, and characterization of probes that integrate coaxial tips for spatially sharp potential profiles with piezoresistors for self-contained, electrical displacement sensing. With the apex 100 nm above the sample surface, the electrostatic potential profile produced by our coaxial tips is more than 2 times narrower than that of unshielded tips with no long tails. In a scan bandwidth of 1 Hz-10 kHz, our probes have a displacement resolution of 2.9 Å at 293 K and 79 Å at 2 K, where the low-temperature performance is limited by amplifier noise. We show scanning gate microscopy images of a quantum point contact obtained with our probes, highlighting the improvement to lateral resolution resulting from the coaxial tip.

  11. Self-sensing cantilevers with integrated conductive coaxial tips for high-resolution electrical scanning probe metrology

    SciTech Connect

    Haemmerli, Alexandre J.; Pruitt, Beth L.; Harjee, Nahid; Koenig, Markus; Garcia, Andrei G. F.; Goldhaber-Gordon, David

    2015-07-21

    The lateral resolution of many electrical scanning probe techniques is limited by the spatial extent of the electrostatic potential profiles produced by their probes. Conventional unshielded conductive atomic force microscopy probes produce broad potential profiles. Shielded probes could offer higher resolution and easier data interpretation in the study of nanostructures. Electrical scanning probe techniques require a method of locating structures of interest, often by mapping surface topography. As the samples studied with these techniques are often photosensitive, the typical laser measurement of cantilever deflection can excite the sample, causing undesirable changes electrical properties. In this work, we present the design, fabrication, and characterization of probes that integrate coaxial tips for spatially sharp potential profiles with piezoresistors for self-contained, electrical displacement sensing. With the apex 100 nm above the sample surface, the electrostatic potential profile produced by our coaxial tips is more than 2 times narrower than that of unshielded tips with no long tails. In a scan bandwidth of 1 Hz–10 kHz, our probes have a displacement resolution of 2.9 Å at 293 K and 79 Å at 2 K, where the low-temperature performance is limited by amplifier noise. We show scanning gate microscopy images of a quantum point contact obtained with our probes, highlighting the improvement to lateral resolution resulting from the coaxial tip.

  12. Liquid chromatography with high resolution mass spectrometry for identification of organic contaminants in fish fillet: screening and quantification assessment using two scan modes for data acquisition.

    PubMed

    Munaretto, Juliana S; May, Marília M; Saibt, Nathália; Zanella, Renato

    2016-07-22

    This study proposed a strategy to identify and quantify 182 organic contaminants from different chemical classes, as for instance pesticides, veterinary drug and personal care products, in fish fillet using liquid chromatography coupled to quadrupole time-of-flight mass spectrometry (LC-QToF/MS). For this purpose, two different scan methods (full scan and all ions MS/MS) were evaluated to assess the best option for screening analysis in spiked fish fillet samples. In general, full scan acquisition was found to be more reliable (84%) in the automatic identification and quantification when compared to all ions MS/MS with 72% of the compounds detected. Additionally, a qualitative automatic search showed a mass accuracy error below 5ppm for 77% of the compounds in full scan mode compared to only 52% in all ions MS/MS scan. However, all ions MS/MS provides fragmentation information of the target compounds. Undoubtedly, structural information of a wide number of compounds can be obtained using high resolution mass spectrometry (HRMS), but it is necessary thoroughly assess it, in order to choose the best scan mode. PMID:27324622

  13. State-of-the-art in CT hardware and scan modes for cardiovascular CT

    PubMed Central

    Halliburton, Sandra; Arbab-Zadeh, Armin; Dey, Damini; Einstein, Andrew J.; Gentry, Ralph; George, Richard T.; Gerber, Thomas; Mahesh, Mahadevappa; Weigold, Wm. Guy

    2013-01-01

    Multidetector row computed tomography (CT) allows noninvasive anatomic and functional imaging of the heart, great vessels, and the coronary arteries. In recent years, there have been several advances in CT hardware, which have expanded the clinical utility of CT for cardiovascular imaging; such advances are ongoing. This review article from the Society of Cardiovascular Computed Tomography (SCCT) Basic and Emerging Sciences and Technology (BEST) Working Group summarizes the technical aspects of current state-of-the-art CT hardware and describes the scan modes this hardware supports for cardiovascular CT imaging. PMID:22551595

  14. Dynamic CT scanning of spinal column trauma

    SciTech Connect

    Brown, B.M.; Brant-Zawadzki, M.; Cann, C.E.

    1982-12-01

    Dynamic sequential computed tomographic scanning with automatic table incrementation uses low milliampere-second technique to eliminate tube cooling delays between scanning slices and, thus, markedly shortens examination times. A total of 25 patients with spinal column trauma involving 28 levels were studied with dynamic scans and retrospectively reviewed. Dynamic studies were considerably faster than conventional spine examinations and yielded reliable diagnosis. Bone disruption and subluxation was accurately evaluated, and the use of intrathecal metrizamide in low doses allowed direct visualization of spinal cord or radicular compromise. Multiplanar image reformation was aided by the dynamic incrementation technique, since motion between slices (and the resulting misregistration artifact on image reformation) was minimized. A phantom was devised to test spatial resolution of computed tomography for objects 1-3 mm in size and disclosed minimal differences for dynamic and conventional computed tomographic techniques in resolving medium-to-high-contrast objects.

  15. High-resolution computed tomography of the paranasal sinuses, pharynx and related regions: Impact of CT identification on diagnosis and patient management

    SciTech Connect

    Maatman, G.

    1986-01-01

    The purpose of this textbook is two-fold: to define the normal anatomic structure and pathologic conditions of the nose, paranasal sinuses, pharynx and soft tissues, and to discuss the diagnostic impact and ultimate-effect of computed tomography (CT) in the treatment of patients with head and neck disorders. The two chapters on normal gross and CT anatomic configuration are meticulously constructed. The subsequent sections on pathologic conditions are illustrated with examples of neoplastic disease. The CT scans are very good; a few of these were obtained in the direct sagittal plane. There is considerable discussion of the reasons that CT is equal to better than, or worse than other imaging modalities with respect to patient treatment in terms of both diagnosis and therapy.

  16. High resolution scanning electron microscopy of rabbit corneal endothelium to show effects of UV-visible irradiation in the presence of chlorpromazine

    SciTech Connect

    Lea, P.J.; Hollenberg, M.J.; Menon, I.A.; Temkin, R.J.; Persad, S.D.; Basu, P.K. )

    1989-01-01

    The ultrastructure of rabbit cornea endothelial cells was examined by scanning electron microscopy (SEM) in freeze-cleaved corneas using a Hitachi S-570 scanning electron microscope in the high resolution mode (HRSEM). In order to study phototoxic effects in vitro, rabbit corneas (experimental) were cultured as organ culture in the presence of 5 micrograms/ml chlorpromazine (CPZ) and irradiated. For comparison, control 1 corneas were not irradiated but incubated in the dark without CPZ in the medium; control 2 corneas were also kept in the dark but in the presence of CPZ; control 3 corneas were irradiated with no CPZ in the medium. Cellular damage was not seen in the three types of control corneas, but in the experimental corneas the endothelial cells showed extensive disruption of the cell membrane and some deterioration of the intracellular components. Our study confirmed that HRSEM is a satisfactory new technique for visualizing damage of the intracellular organelles of corneal endothelium.

  17. Design of a high-resolution small-animal SPECT-CT system sharing a CdTe semiconductor detector

    NASA Astrophysics Data System (ADS)

    Ryu, Hyun-Ju; Lee, Young-Jin; Lee, Seung-Wan; Cho, Hyo-Min; Choi, Yu-Na; Kim, Hee-Joung

    2012-07-01

    A single photon emission computed tomography (SPECT) system with a co-registered X-y computed tomography (CT) system allows the convergence of functional information and morphologic information. The localization of radiopharmaceuticals on a SPECT can be enhanced by combining the SPECT with an anatomical modality, such as X-ray CT. Gamma-ray imaging for nuclear medicine devices and X-ray imaging systems for diagnostics has recently been developed based on semiconductor detectors, and semiconductor detector materials such as cadmium telluride (CdTe) or cadmium zinc telluride (CZT) are available for both X-ray and gamma-ray systems for small-animal imaging. CdTe or CZT detectors provide strong absorption and high detection efficiency of high energy X-ray and gamma-ray photons because of their large atomic numbers. In this study, a pinhole collimator SPECT system sharing a cadmium telluride (CdTe) detector with a CT was designed. The GEANT4 application for tomographic emission (GATE) v.6.1 was used for the simulation. The pinhole collimator was designed to obtain a high spatial resolution of the SPECT system. The acquisition time for each projection was 40 seconds, and 60 projections were obtained for tomographic image acquisition. The reconstruction was performed using ordered subset expectation maximization (OS-EM) algorithms. The sensitivity and the spatial resolution were measured on the GATE simulation to evaluate the system characteristics. The spatial resolution of the system calculated from the FWHM of Gaussian fitted PSF curve was 0.69 mm, and the sensitivity of the system was measured to be 0.354 cps/kBq by using a Tc-99m point source of 1 MBq for 800 seconds. A phantom study was performed to verify the design of the dual imaging modality system. The system will be built as designed, and it can be applied as a pre-clinical imaging system.

  18. CT Scanning Imaging Method Based on a Spherical Trajectory

    PubMed Central

    2016-01-01

    In industrial computed tomography (CT), the mismatch between the X-ray energy and the effective thickness makes it difficult to ensure the integrity of projection data using the traditional scanning model, because of the limitations of the object’s complex structure. So, we have developed a CT imaging method that is based on a spherical trajectory. Considering an unrestrained trajectory for iterative reconstruction, an iterative algorithm can be used to realise the CT reconstruction of a spherical trajectory for complete projection data only. Also, an inclined circle trajectory is used as an example of a spherical trajectory to illustrate the accuracy and feasibility of this new scanning method. The simulation results indicate that the new method produces superior results for a larger cone-beam angle, a limited angle and tabular objects compared with traditional circle trajectory scanning. PMID:26934744

  19. [Usefulness of CT scan in the diagnosis of pulmonary aspergilloma].

    PubMed

    Gea, J; Arán, X; Sauleda, J; Broquetas, J M; Alegret, X; Bartrina, J

    1991-05-01

    Early diagnosis and precise anatomical localization of aspergillomas are essential for an effective treatment of their complications. We have evaluated the usefulness of thorax CT scan in the fulfillment of these objectives. Nine consecutive patients were studied with a presumable diagnosis of pulmonary aspergilloma. A thorax CT scan was performed in all patients (sections every 5 to 10 mm) in lying position and with lateral mobilizations. This technique allowed to rule out as fibrotic lesions some of the images previously attributed to mycetomas by conventional X-ray. On the other hand it helped to identify small size aspergillomas, to precise their localization and to demonstrate the possible communication between the main cavity and bronchial tree. In three patients who died in the period immediately following the study an excellent correlation between CT scan and underlying pathological lesions was observed. PMID:1891635

  20. CT Scanning Imaging Method Based on a Spherical Trajectory.

    PubMed

    Chen, Ping; Han, Yan; Gui, Zhiguo

    2016-01-01

    In industrial computed tomography (CT), the mismatch between the X-ray energy and the effective thickness makes it difficult to ensure the integrity of projection data using the traditional scanning model, because of the limitations of the object's complex structure. So, we have developed a CT imaging method that is based on a spherical trajectory. Considering an unrestrained trajectory for iterative reconstruction, an iterative algorithm can be used to realise the CT reconstruction of a spherical trajectory for complete projection data only. Also, an inclined circle trajectory is used as an example of a spherical trajectory to illustrate the accuracy and feasibility of this new scanning method. The simulation results indicate that the new method produces superior results for a larger cone-beam angle, a limited angle and tabular objects compared with traditional circle trajectory scanning. PMID:26934744

  1. A system for high resolution 3D mapping using laser radar and requiring no beam scanning mechanisms

    NASA Astrophysics Data System (ADS)

    Rademacher, Paul

    1988-06-01

    The inherently high angular and range resolution capabilities associated with radar systems operating at optical frequencies are at once a blessing and a curse. Standard implementations consist of very narrow field of view optical receivers operating in conjunction with laser transmitters or even narrower illumination beamwidth. While high angular resolution is thus achieved, mechanical scanning is required to gather data over extended fields of view. The many laser pulse transmissions necessary to cover the entire field of view increase the detectability of the system by enemy sensors. A system concept is proposed which, through the use of a single laser transmitter and multiple optical receivers, largely eliminate these deficiencies. Complete 3D data over a broad angular field of view and depth of field can be gathered based upon the reflections from a single transmitted laser pulse. Covert operation is enhanced as a result of the sparse laser transmissions required. The eye safety characteristics of the system are also enhanced. Proprietary coding of optical shutters in each of the multiple optical receivers permits the number of such receivers to be reduced to a very practical few. An alternative configuration of the system reduces the number of receivers required to one, at the expense of increased data acquisition time. The multiple receiver configuration is simply a parallel processing implementation of the single receiver approach. While data rate is reduced by the single receiver configuration, it still greatly exceeds that of scanning systems, and hardware complexity is also reduced significantly.

  2. High-resolution epi-illumination raster-scan optoacoustic mesoscopy for imaging of model organisms and microvessels

    NASA Astrophysics Data System (ADS)

    Omar, Murad; Soliman, Dominik; Gateau, Jérôme; Ntziachristos, Vasilis

    2015-07-01

    We have developed an epi-illumination raster-scan optoacoustic mesoscopy system (RSOM), the new system is capable of imaging model organisms, and vasculature. The newly developed system is based on a custom designed; spherically focused detector with a Characterization of the system shows an isotropic lateral resolution of 18 μm, and an axial resolution of 4 μm. The scan times are on the order of 8 minutes for a field of view of 10×10 mm2. The achieved resolution is slightly degraded up to a depth of 5 mm. After characterizing the system we showcase it's performance on a zebrafish ex vivo, and an excised mouse ear. Additionally, to improve the visibility of small structures we have reconstructed the high frequencies, and the low frequencies separately, and at the end overplayed the two reconstructions using different colors, this way the high frequencies are not masked by the low frequencies which have a higher signal to noise ratio.

  3. Evaluation of the relationship between smear positivity and high-resolution CT findings in children with pulmonary tuberculosis

    PubMed Central

    Bolursaz, Mohammad Reza; Mehrian, Payam; Aghahosseini, Farahnaz; Lotfian, Ferial; Khalilzadeh, Soheila; Baghaie, Nooshin; Hassanzad, Maryam; Velayati, Ali Akbar

    2014-01-01

    Summary Background The aim of this study is to find a relationship between the radiological manifestations of childhood tuberculosis on a high-resolution computed tomography (HRCT) and the results of sputum smear. This study aims to propose an alternative indicator of infectivity in terms of prevention of disease transmission through selective isolation policy in children whose clinical condition is highly suggestive of tuberculosis. Material/Methods This retrospective comparative study was performed on 95 children under 15 years of age diagnosed with tuberculosis based on both WHO criteria and positive sputum culture for mycobacterium Tuberculosis. The children were admitted for TB screening in the pediatric department of national research institute of tuberculosis and lung disease (NRITLD) between 2008–2012. Direct smear collected from sputum or gastric lavage, as well as HRCT were performed in all children prior to administration of medical therapy. Children were divided into 2 groups based on positive and negative smear results. HRCT abnormalities, as well as their anatomical distribution were compared between these 2 groups using multivariate analytic model. Results The most prevalent abnormalities in the positive smear group were consolidation, tree-in-bud pattern, upper lobe nodular infiltration and cavitation. The negative smear group featured lymphadenopathy, consolidation, collapse and nodular infiltration in the upper lobe. Cavity, tree- in-bud pattern and upper lobe nodular infiltration were highly associated with smear positivity in children. Conversely, lymphadenopathy and collapse had significant association with a negative smear. Conclusions This study revealed that cavity, tree-in-bud and upper lobe nodular infiltration has significant association with smear positivity in childhood tuberculosis. On the other hand, lymphadenopathy and collapse were closely associated with smear negativity in this age group. It was also demonstrated that children

  4. Laser microbeam CT scanning of dosimetry gels

    NASA Astrophysics Data System (ADS)

    Maryanski, Marek J.; Ranade, Manisha K.

    2001-06-01

    A novel design of an optical tomographic scanner is described that can be used for 3D mapping of optical attenuation coefficient within translucent cylindrical objects with spatial resolution on the order of 100 microns. Our scanner design utilizes the cylindrical geometry of the imaged object to obtain the desired paths of the scanning light rays. A rotating mirror and a photodetector are placed at two opposite foci of the translucent cylinder that acts as a cylindrical lens. A He-Ne laser beam passes first through a focusing lens and then is reflected by the rotating mirror, so as to scan the interior of the cylinder with focused and parallel paraxial rays that are subsequently collected by the photodetector to produce the projection data, as the cylinder rotates in small angle increments between projections. Filtered backprojection is then used to reconstruct planar distributions of optical attenuation coefficient in the cylinder. Multiplanar scans are used to obtain a complete 3D tomographic reconstruction. Among other applications, the scanner can be used in radiation therapy dosimetry and quality assurance for mapping 3D radiation dose distributions in various types of tissue-equivalent gel phantoms that change their optical attenuation coefficients in proportion to the absorbed radiation dose.

  5. Optimal experimental design for the detection of light atoms from high-resolution scanning transmission electron microscopy images

    SciTech Connect

    Gonnissen, J.; De Backer, A.; Martinez, G. T.; Van Aert, S.; Dekker, A. J. den; Rosenauer, A.; Sijbers, J.

    2014-08-11

    We report an innovative method to explore the optimal experimental settings to detect light atoms from scanning transmission electron microscopy (STEM) images. Since light elements play a key role in many technologically important materials, such as lithium-battery devices or hydrogen storage applications, much effort has been made to optimize the STEM technique in order to detect light elements. Therefore, classical performance criteria, such as contrast or signal-to-noise ratio, are often discussed hereby aiming at improvements of the direct visual interpretability. However, when images are interpreted quantitatively, one needs an alternative criterion, which we derive based on statistical detection theory. Using realistic simulations of technologically important materials, we demonstrate the benefits of the proposed method and compare the results with existing approaches.

  6. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging

    PubMed Central

    Boulanger, Jérôme; Gueudry, Charles; Münch, Daniel; Cinquin, Bertrand; Paul-Gilloteaux, Perrine; Bardin, Sabine; Guérin, Christophe; Senger, Fabrice; Blanchoin, Laurent; Salamero, Jean

    2014-01-01

    Total internal reflection fluorescence microscopy (TIRFM) is the method of choice to visualize a variety of cellular processes in particular events localized near the plasma membrane of live adherent cells. This imaging technique not relying on particular fluorescent probes provides a high sectioning capability. It is, however, restricted to a single plane. We present here a method based on a versatile design enabling fast multiwavelength azimuthal averaging and incidence angles scanning to computationally reconstruct 3D images sequences. We achieve unprecedented 50-nm axial resolution over a range of 800 nm above the coverslip. We apply this imaging modality to obtain structural and dynamical information about 3D actin architectures. We also temporally decipher distinct Rab11a-dependent exocytosis events in 3D at a rate of seven stacks per second. PMID:25404337

  7. High-resolution three-dimensional scanning optical image system for intrinsic and extrinsic contrast agents in tissue

    NASA Astrophysics Data System (ADS)

    Gu, Yueqing; Qian, Zhiyu; Chen, Jinxian; Blessington, Dana; Ramanujam, Nimmi; Chance, Britton

    2002-01-01

    This article presents the theory and development of a three-dimensional (3D) imaging instrument capable of determining the biochemical properties of tissue by measuring the absorption or fluorescence of different intrinsic and extrinsic agents simultaneously. A bifurcated optical fiber bundle, serving to deliver the excitation light and collect the emission or reflection light, scans over the flat tissue surface retrieving optical signals in each pixel. Two-dimensional (2D) images of a series of subsequent sections are obtained after signal conversion and processing to yield a 3D image. Manipulation of the scanning step and diameter size of the fibers within the bundle, the spatial resolution of the instrument attains a maximum of 40 × 40 × 10 μm3. The wavelength range is extended from ultraviolet to the near infrared (NIR) through specialized optical design, typically employed for the NIR extrinsic contrast agents study. The instrument is most applicable in situations involving the measurement of fluorescence or absorption at any specific wavelength within the spectrum range. Flavoprotein and nicotinamide adeine dinucleotide are the two typical intrinsic agents indicating the oxidization and reduction status of the tissue sample, with their fluorescence detected at wavelengths of 540 and 440 nm, respectively. Oxy and deoxy hemoglobin are two other significant intrinsic agents for evaluating the blood oxygenation saturation by recording their absorptions at two different wavelengths of 577 and 546 nm. These intrinsic agents were measured in this study for comparison of biochemical properties of rat liver in different gas inhalation treatments. Indocyanine green, a NIR extrinsic contrast agent measured at wavelengths of 780 nm/830 nm as excitation/emission can indicate blood pooling by displaying the distribution of blood vessels within a 9 L tumor. The advantage of high sensitivity, spatial resolution, and broad applied potentiality were demonstrated by the

  8. Digital radiographic localization for CT scanning of the larynx

    SciTech Connect

    Silverman, P.M.; Korobkin, M.; Rauch, R.F.

    1983-12-01

    Computed tomography (CT) of the larynx is the preferred method for staging laryngeal carcinoma and assessing the extent of injury from trauma. The standard method of examination consists of 5 mm contiguous scans throughout the larynx in quiet respiration. Scans are performed with the patient supine with the neck slightly extended allowing the long axis of the larynx to be perpendicular to the scanning plane. A complete examination requires scanning from the supraglottic region (level of hyoid bone) to the subglottic region (level of cricoid cartlage). In the authors' experience when this method is used, multiple scans are performed cephalad to the level of interest because no upper limit of the examination is established before transaxial scans are done. We have used the lateral digital radiograph of the neck to identify specific landmarks so that the upper and lower limets of the examination can be established before scanning.

  9. Treatment of Alzheimer Disease With CT Scans

    PubMed Central

    Moore, Eugene R.; Hosfeld, Victor D.; Nadolski, David L.

    2016-01-01

    Alzheimer disease (AD) primarily affects older adults. This neurodegenerative disorder is the most common cause of dementia and is a leading source of their morbidity and mortality. Patient care costs in the United States are about 200 billion dollars and will more than double by 2040. This case report describes the remarkable improvement in a patient with advanced AD in hospice who received 5 computed tomography scans of the brain, about 40 mGy each, over a period of 3 months. The mechanism appears to be radiation-induced upregulation of the patient’s adaptive protection systems against AD, which partially restored cognition, memory, speech, movement, and appetite. PMID:27103883

  10. Sedimentary features of the south Texas continental slope as revealed by side-scan sonar and high-resolution seismic data

    SciTech Connect

    Rothwell, R.G.; Kenyon, N.H. ); McGregor, B.A. )

    1991-02-01

    Sedimentary provinces on the south Texas slope have been identified by their acoustic character on long-range side-scan sonar records and high-resolution seismic profiles. Probable lithofacies within these provinces have been identified by core data and by analogy with previously cored acoustic facies. In the northern part of the study area, the East Breaks Slide is a prominent mass-transport feature. Revised bathymetry shows that the slide originated on the upper slope (200-1,000 m), in front of a sandy late Wisconsinan shelf-margin delta, where the gradient is up to 3{degree}. Side-scan sonar data indicates that the slide is a strongly backscattering feature extending more than 110 km downslope from the shelf edge. it consists of two lobes that are separated by a diapiric high. Diapiric highs on the middle slope have blocked most of the flow. borehole data shows that the slide deposit contains intercalated sands and contorted bedding. The slide is therefore attributed to failure of sandy deltaic material deposited close to the shelf edge during the last period of low sea level (late Wisconsinan, circa 11-29 Ka). Core data suggests that the weakly backscattering acoustic facies adjacent to the slide are fine-grained sediments (mudturbidites and hemipelagites) of a slope mud drape. The middle slope in front of the sandy late Wisconsinan shelf-margin delta of the Rio Grande has an intermediate level of backscattering with numerous channels leading to the Sigsbee Deep. Acoustic facies mapping using long-range side-scan sonar matches well with acoustic facies mapping using 3.5-kHz high-resolution seismic profiles.

  11. Recording Approach of Heritage Sites Based on Merging Point Clouds from High Resolution Photogrammetry and Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Grussenmeyer, P.; Alby, E.; Landes, T.; Koehl, M.; Guillemin, S.; Hullo, J. F.; Assali, P.; Smigiel, E.

    2012-07-01

    Different approaches and tools are required in Cultural Heritage Documentation to deal with the complexity of monuments and sites. The documentation process has strongly changed in the last few years, always driven by technology. Accurate documentation is closely relied to advances of technology (imaging sensors, high speed scanning, automation in recording and processing data) for the purposes of conservation works, management, appraisal, assessment of the structural condition, archiving, publication and research (Patias et al., 2008). We want to focus in this paper on the recording aspects of cultural heritage documentation, especially the generation of geometric and photorealistic 3D models for accurate reconstruction and visualization purposes. The selected approaches are based on the combination of photogrammetric dense matching and Terrestrial Laser Scanning (TLS) techniques. Both techniques have pros and cons and recent advances have changed the way of the recording approach. The choice of the best workflow relies on the site configuration, the performances of the sensors, and criteria as geometry, accuracy, resolution, georeferencing, texture, and of course processing time. TLS techniques (time of flight or phase shift systems) are widely used for recording large and complex objects and sites. Point cloud generation from images by dense stereo or multi-view matching can be used as an alternative or as a complementary method to TLS. Compared to TLS, the photogrammetric solution is a low cost one, as the acquisition system is limited to a high-performance digital camera and a few accessories only. Indeed, the stereo or multi-view matching process offers a cheap, flexible and accurate solution to get 3D point clouds. Moreover, the captured images might also be used for models texturing. Several software packages are available, whether web-based, open source or commercial. The main advantage of this photogrammetric or computer vision based technology is to

  12. Toward the Cenozoic Megasplice - high-resolution XRF core scanning data and improved composite records from IODP Expedition 320: implications for fine scale paleoceanography (Invited)

    NASA Astrophysics Data System (ADS)

    Westerhold, T.; Bown, P. R.; Dunkley Jones, T.; Lyle, M. W.; Moore, T. C.; Pälike, H.; Roehl, U.; Wilkens, R. H.; Expedition 320/321 Scientists

    2010-12-01

    A critical need to study past climate change is to sufficiently constrain the ages of past climate events so that global relationships can be discerned. Integrated Ocean Drilling Program (IODP) Expedition 320 recovered high-quality pelagic Cenozoic records with over 800 dated paleomagnetic reversals and decimeter-scale cyclic sediments. These new profiles provide an outstanding framework to inter-calibrate major microfossil groups and refine magnetic polarity chrons for the late Miocene, the entire Oligocene and the late Eocene Epochs. The compilation of a Cenozoic Megasplice which integrates all available bio-, chemo-, and magnetostratigraphic data including those from key records already recovered during Ocean Drilling Program (ODP) Leg 199 is one of the major objectives of the Pacific Equatorial Age Transect (PEAT, IODP Exp. 320 & 321) and prerequisite for further reconstructing the climate history of the Equatorial Pacific in detail. Here we present extended post-cruise refinements of the shipboard composite records of IODP Exp. 320 Sites U1331, U1332, U1333, U1334 as well as ODP Leg 199 Sites 1218, 1219 and 1220. The revised composite records were used to perform a site-to-site correlation and integration of Leg 199 and Exp. 320 sites. Based on this decimeter scale correlation a high resolution integrated paleomagnetic and biostratigraphic framework for the Equatorial Pacific is established which covers the time interval from 20 to 40 Ma. This framework will be the key for further high-resolution paleoceanographic interpretations of the late Paleogene, e.g. the E/O transition. As part of our study we also present high resolution X-ray fluorescence (XRF) core scanning data acquired from more than 1200 meters of sediment cores from Exp. 320 and Leg 199 encompassing the middle Eocene to early Oligocene (magnetochrons C12n to C20n). These new, critical records enable us to improve the orbitally tuned time scale and to reconstruct variations in the carbonate

  13. Detection of macrophage activity in atherosclerosis in vivo using multichannel, high-resolution laser scanning fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Pande, Ashvin N.; Kohler, Rainer; Aikawa, Elena; Weissleder, Ralph; Jaffer, Farouc

    2006-03-01

    Molecular and cellular mechanisms of atherogenesis and its treatment are largely being unraveled by in vitro techniques. We describe methodology to directly image macrophage cell activity in vivo in a murine model of atherosclerosis using laser scanning fluorescence microscopy (LSFM) and a macrophage-targeted, near-infrared fluorescent (NIRF) magnetofluorescent nanoparticle (MFNP). Atherosclerotic apolipoprotein E deficient (apoE -/-) mice (n=10) are injected with MFNP or 0.9% saline, and wild-type mice (n=4) are injected with MFNP as additional controls. After 24 h, common carotid arteries are surgically exposed and prepared for LSFM. Multichannel LSFM of MFNP-enhanced carotid atheroma (5×5-µm in-plane resolution) shows a strong focal NIRF signal, with a plaque target-to-background ratio of 3.9+/-1.8. Minimal NIRF signal is observed in control mice. Spectrally resolved indocyanine green (ICG) fluorescence angiograms confirm the intravascular location of atheroma. On ex vivo fluorescence reflectance imaging, greater NIRF plaque signal is seen in apoE -/- MFNP mice compared to controls (p<0.01). The NIRF signal correlates well with immunostained macrophages, both by stained surface area (r=0.77) and macrophage number (r=0.86). The validated experimental methodology thus establishes a platform for investigating macrophage activity in atherosclerosis in vivo, and has implications for the detection of clinical vulnerable plaques.

  14. In vivo high-resolution structural imaging of large arteries in small rodents using two-photon laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Megens, Remco T. A.; Reitsma, Sietze; Prinzen, Lenneke; Oude Egbrink, Mirjam G. A.; Engels, Wim; Leenders, Peter J. A.; Brunenberg, Ellen J. L.; Reesink, Koen D.; Janssen, Ben J. A.; Ter Haar Romeny, Bart M.; Slaaf, Dick W.; van Zandvoort, Marc A. M. J.

    2010-01-01

    In vivo (molecular) imaging of the vessel wall of large arteries at subcellular resolution is crucial for unraveling vascular pathophysiology. We previously showed the applicability of two-photon laser scanning microscopy (TPLSM) in mounted arteries ex vivo. However, in vivo TPLSM has thus far suffered from in-frame and between-frame motion artifacts due to arterial movement with cardiac and respiratory activity. Now, motion artifacts are suppressed by accelerated image acquisition triggered on cardiac and respiratory activity. In vivo TPLSM is performed on rat renal and mouse carotid arteries, both surgically exposed and labeled fluorescently (cell nuclei, elastin, and collagen). The use of short acquisition times consistently limit in-frame motion artifacts. Additionally, triggered imaging reduces between-frame artifacts. Indeed, structures in the vessel wall (cell nuclei, elastic laminae) can be imaged at subcellular resolution. In mechanically damaged carotid arteries, even the subendothelial collagen sheet (~1 μm) is visualized using collagen-targeted quantum dots. We demonstrate stable in vivo imaging of large arteries at subcellular resolution using TPLSM triggered on cardiac and respiratory cycles. This creates great opportunities for studying (diseased) arteries in vivo or immediate validation of in vivo molecular imaging techniques such as magnetic resonance imaging (MRI), ultrasound, and positron emission tomography (PET).

  15. High-Resolution Scanning Electron Microscopy and Immuno-Gold Labeling of the Nuclear Lamina and Nuclear Pore Complex.

    PubMed

    Goldberg, Martin W

    2016-01-01

    Scanning electron microscopy (SEM) is a technique used to image surfaces. Field emission SEMs (feSEMs) can resolve structures that are ~0.5-1.5 nm apart. FeSEM, therefore is a useful technique for imaging molecular structures that exist at surfaces such as membranes. The nuclear envelope consists of four membrane surfaces, all of which may be accessible for imaging. Imaging of the cytoplasmic face of the outer membrane gives information about ribosomes and cytoskeletal attachments, as well as details of the cytoplasmic peripheral components of the nuclear pore complex, and is the most easily accessed surface. The nucleoplasmic face of the inner membrane is easily accessible in some cells, such as amphibian oocytes, giving valuable details about the organization of the nuclear lamina and how it interacts with the nuclear pore complexes. The luminal faces of both membranes are difficult to access, but may be exposed by various fracturing techniques. Protocols are presented here for the preparation, labeling, and feSEM imaging of Xenopus laevis oocyte nuclear envelopes. PMID:27147058

  16. High-resolution and site-specific scanning spreading resistance microscopy and its applications to silicon devices

    SciTech Connect

    Zhang, L.; Koike, M.; Takeno, S.; Hara, K.

    2012-11-06

    Due to the continuous reduction of the critical dimensions of semiconductor devices, it becomes very important to know the two dimensional (2D) doping profile for improving device performance. Scanning spreading resistance microscopy (SSRM) performed in high vacuum is a powerful technique for quantitative 2D-doping profiling, with high spatial resolution and wide dynamic range of carrier concentration, as well as capability of site-specific analysis for accurate position. In this paper, we review SSRM applications to source/drain engineering in Si devices and their correlation with device characteristics by demonstrating several case studies. Direct observation of (110)/(100) CMOSFETs clarified significant differences between both pFETs and nFETs on (110) and (100) silicon substrates, revealing 2D channeling effect of boron ion implantation in pFETs; as well as silicidation impact on junction leakage-current characteristics in nFETs. Furthermore, our sample-preparation breakthrough enables site-specific SSRM characterization within 60 nm ultra thin samples and therefore failure analysis of real SRAM devices, demonstrating the high potential of SSRM technology for further device scaling and for failure analysis.

  17. High-resolution spot-scan electron microscopy of microcrystals of an alpha-helical coiled-coil protein.

    PubMed

    Bullough, P A; Tulloch, P A

    1990-09-01

    We describe the electron microscopy of a crystalline assembly of an alpha-helical coiled-coil protein extracted from the ootheca of the praying mantis. Electron diffraction patterns of unstained crystals show crystal lattice sampling of the coiled-coil molecular transform to a resolution beyond 1.5 A. Using a "spot-scan" method of electron imaging, micrographs of unstained crystals have been obtained that visibly diffract laser light from crystal spacings as small as 4.3 A. A projection map was calculated to 4 A using electron diffraction amplitudes and phases from computer-processed images. The projection map clearly shows modulations in density arising from the 5.1 A alpha-helical repeat, the first time this type of modulation has been revealed by electron microscopy. The crystals have p2 plane group symmetry with a = 92.4 A, b = 150.7 A, y = 92.4 degrees. Examination of tilted specimens shows that c is approximately 18 A, indicating that the unit cell is only one molecule thick. A preliminary interpretation shows tightly packed molecules some 400 A long lying with their long axes in the plane of the projection. The molecules have a coiled-coil configuration for most of their length. The possible modes of packing of the molecules in three dimensions are discussed. PMID:2398496

  18. First application of liquid-metal-jet sources for small-animal imaging: High-resolution CT and phase-contrast tumor demarcation

    SciTech Connect

    Larsson, Daniel H.; Lundstroem, Ulf; Burvall, Anna; Hertz, Hans M.

    2013-02-15

    Purpose: Small-animal studies require images with high spatial resolution and high contrast due to the small scale of the structures. X-ray imaging systems for small animals are often limited by the microfocus source. Here, the authors investigate the applicability of liquid-metal-jet x-ray sources for such high-resolution small-animal imaging, both in tomography based on absorption and in soft-tissue tumor imaging based on in-line phase contrast. Methods: The experimental arrangement consists of a liquid-metal-jet x-ray source, the small-animal object on a rotating stage, and an imaging detector. The source-to-object and object-to-detector distances are adjusted for the preferred contrast mechanism. Two different liquid-metal-jet sources are used, one circulating a Ga/In/Sn alloy and the other an In/Ga alloy for higher penetration through thick tissue. Both sources are operated at 40-50 W electron-beam power with {approx}7 {mu}m x-ray spots, providing high spatial resolution in absorption imaging and high spatial coherence for the phase-contrast imaging. Results: High-resolution absorption imaging is demonstrated on mice with CT, showing 50 {mu}m bone details in the reconstructed slices. High-resolution phase-contrast soft-tissue imaging shows clear demarcation of mm-sized tumors at much lower dose than is required in absorption. Conclusions: This is the first application of liquid-metal-jet x-ray sources for whole-body small-animal x-ray imaging. In absorption, the method allows high-resolution tomographic skeletal imaging with potential for significantly shorter exposure times due to the power scalability of liquid-metal-jet sources. In phase contrast, the authors use a simple in-line arrangement to show distinct tumor demarcation of few-mm-sized tumors. This is, to their knowledge, the first small-animal tumor visualization with a laboratory phase-contrast system.

  19. Measurement of the retinal arteriolar response to a hyperoxic provocation in nonsmokers and smokers, using a high-resolution confocal scanning laser ophthalmoscope

    NASA Astrophysics Data System (ADS)

    O' Halloran, Margaret; O'Donoghue, Eamonn; Dainty, Chris

    2014-07-01

    We used a high-resolution confocal scanning laser ophthalmoscope to measure the magnitude of change in retinal arteriolar diameters in response to oxygen breathing in young, healthy nonsmokers and smokers. Image sequences were obtained before and during oxygen breathing. Image sequences were desinusoided, registered, and averaged, before vessel diameters were measured using a sliding linear regression filter. Arteriole diameters were observed to constrict during the first 5 min. of oxygen breathing, plateau, and remain stable while hyperoxia was maintained, returning to baseline at the end of the hyperoxic period. Blood flow to the temporal retina was found to be higher than to the nasal retina (p=0.008). The percentage constriction of vessels did not vary across retinal quadrants (p=0.372, analysis of variance) and did not depend on vessel size (p=0.538). Baseline diameters were unaffected by acute cigarette smoking. The magnitude of vasoconstriction was diminished in smokers compared to nonsmokers (p=0.017), while acute smoking did not influence the percentage constriction attained by the vessels (p=0.621). Using a high-resolution imaging technique allowed us to measure reactivity to a high degree of accuracy and to assess it in vessels of smaller caliber than were previously studied.

  20. Automated lung segmentation of low resolution CT scans of rats

    NASA Astrophysics Data System (ADS)

    Rizzo, Benjamin M.; Haworth, Steven T.; Clough, Anne V.

    2014-03-01

    Dual modality micro-CT and SPECT imaging can play an important role in preclinical studies designed to investigate mechanisms, progression, and therapies for acute lung injury in rats. SPECT imaging involves examining the uptake of radiopharmaceuticals within the lung, with the hypothesis that uptake is sensitive to the health or disease status of the lung tissue. Methods of quantifying lung uptake and comparison of right and left lung uptake generally begin with identifying and segmenting the lung region within the 3D reconstructed SPECT volume. However, identification of the lung boundaries and the fissure between the left and right lung is not always possible from the SPECT images directly since the radiopharmaceutical may be taken up by other surrounding tissues. Thus, our SPECT protocol begins with a fast CT scan, the lung boundaries are identified from the CT volume, and the CT region is coregistered with the SPECT volume to obtain the SPECT lung region. Segmenting rat lungs within the CT volume is particularly challenging due to the relatively low resolution of the images and the rat's unique anatomy. Thus, we have developed an automated segmentation algorithm for low resolution micro-CT scans that utilizes depth maps to detect fissures on the surface of the lung volume. The fissure's surface location is in turn used to interpolate the fissure throughout the lung volume. Results indicate that the segmentation method results in left and right lung regions consistent with rat lung anatomy.

  1. Ground Deformation Analysis of Blast-Induced Liquefaction at a Simulated Airport Infrastructure Using High Resolution 3D Laser Scanning

    NASA Astrophysics Data System (ADS)

    Minasian, D.; Kayen, R.; Ashford, S.; Kawamata, Y.; Sugano, T.

    2008-12-01

    In October 2007, the Port and Airport Research Institute (PARI) of the Japan Ministry of Land, Infrastructure and Transportation conducted a large-scale blast-induced liquefaction experiment in Ishikari, Hokkaido, Japan. Approximately 24,000 m2 of ground was liquefied using controlled blasting techniques to investigate the performance of airport infrastructure. The USGS and Oregon State University participated in the study and measured topographic changes in ground level using 3D laser scanning techniques (terrestrial lidar), as well as changes in shear wave velocity of the between the pre- and post-liquefied soil. This poster focuses on the lidar results. The overall objective of the PARI experiment is to assess the performance of airport infrastructure subjected to liquefaction. Specifically, the performance of pipelines and large concrete utility raceways located beneath runway pavements is of interest, as well as the performance of pavements and embankments with and without soil improvement techniques. At the site, 5-7 m of loose silty sand was placed as hydraulic fill on natural alluvial sand as an expansion of the Ishikari port facility. On a portion of the liquefied site, three 20 m by 50 m test sections were constructed to investigate the performance of improved ground beneath asphalt runways, concrete runway aprons, and open areas. Pipelines and concrete utility conduits were also buried in each section. The three ground improvement techniques investigated were sand-cement mixing, vertical drains, and colloidal silica injection. The PARI experiment provided an excellent opportunity to conduct terrestrial lidar measurements - a revolutionary tool for accurate characterization of fine-scale changes of topography and identification of subtle deformations. Lidar was used for characterizing post-blast deformations both immediately after the charges were used, and subsequently over time at intervals of 2 days, 4 days, and 5 months after blasting. Settlement

  2. Harms of CT scanning prior to surgery for suspected appendicitis.

    PubMed

    Rogers, William; Hoffman, Jerome; Noori, Naudereh

    2015-02-01

    In this brief analysis we compare the risks and benefits of performing a CT scan to confirm appendicitis prior to surgery instead of operating based on the surgeon's clinical diagnosis. We conclude that the benefit of universal imaging is to avoid 12 unnecessary appendectomies but the cost of those 12 avoided surgeries is one cancer death due to the imaging. PMID:25429870

  3. Justification of CT scans using referral guidelines for imaging.

    PubMed

    Stanescu, G; Rosca-Fartat, G; Stanescu, D

    2015-07-01

    This study analyses the efficiency of the justification of individual computed tomography (CT) procedures using the good practice guide. The conformity of the CT scans with guide's recommendations was retrospectively analysed in a paediatric emergency hospital in Romania. The involved patient doses were estimated. The results show that around one-third of the examinations were not prescribed in conformity with the guide's recommendations, but these results are affected by unclear guide provisions, discussed here. The implications of the provisions of the revised International Atomic Energy Agency's Basic Safety Standards and of the Council Directive 2013/59/EURATOM were analysed. The education and training courses for medical doctors disseminating the provisions of the good practice guide should be considered as the main support for the justification of the CT scans at the individual level. PMID:25805882

  4. Atomic arrangement at ZnTe/CdSe interfaces determined by high resolution scanning transmission electron microscopy and atom probe tomography

    SciTech Connect

    Bonef, Bastien; Rouvière, Jean-Luc; Jouneau, Pierre-Henri; Bellet-Amalric, Edith; Gérard, Lionel; Mariette, Henri; André, Régis; Bougerol, Catherine; Grenier, Adeline

    2015-02-02

    High resolution scanning transmission electron microscopy and atom probe tomography experiments reveal the presence of an intermediate layer at the interface between two binary compounds with no common atom, namely, ZnTe and CdSe for samples grown by Molecular Beam Epitaxy under standard conditions. This thin transition layer, of the order of 1 to 3 atomic planes, contains typically one monolayer of ZnSe. Even if it occurs at each interface, the direct interface, i.e., ZnTe on CdSe, is sharper than the reverse one, where the ZnSe layer is likely surrounded by alloyed layers. On the other hand, a CdTe-like interface was never observed. This interface knowledge is crucial to properly design superlattices for optoelectronic applications and to master band-gap engineering.

  5. Changes in intracortical microporosities induced by pharmaceutical treatment of osteoporosis as detected by high resolution micro-CT

    SciTech Connect

    Tommasini S. M.; Miller L.; Trinward, A.; Acerbo, A.S.; De Carlo F. and Judex, S.

    2011-12-28

    Bone's microporosities play important biologic and mechanical roles. Here, we quantified 3D changes in cortical osteocyte-lacunae and other small porosities induced by estrogen withdrawal and two different osteoporosistreatments. Unlike 2D measurements, these data collected via synchrotron radiation-based {mu}CT describe the size and 3D spatial distribution of a large number of porous structures. Six-month old female Sprague-Dawley rats were separated into four groups of age-matched controls, untreated OVX, OVX treated with PTH, and OVX treated with Alendronate (ALN). Intracortical microporosity of the medial quadrant of the femoral diaphysis was quantified at endosteal, intracortical, and periosteal regions of the samples, allowing the quantification of osteocyte lacunae that were formed primarily before versus after the start of treatment. Across the overall thickness of the medial cortex, lacunar volume fraction (Lc.V/TV) was significantly lower in ALN treated rats compared to PTH. In the endosteal region, average osteocyte lacunar volume (< Lc.V >) of untreated OVX rats was significantly lower than in age-matched controls, indicating a decrease in osteocyte lacunar size in bone formed on the endosteal surface after estrogen withdrawal. The effect of treatment (OVX, ALN, PTH) on the number of lacunae per tissue volume (Lc.N/TV) was dependent on the specific location within the cortex (endosteal, intracortical, periosteal). In both the endosteal and intracortical regions, Lc.N/TV was significantly lower in ALN than in untreated OVX, suggesting a site-specific effect in osteocyte lacuna density with ALN treatment. There also were a significantly greater number of small pores (5-100 {micro}m{sup 3} in volume) in the endosteal region for PTH compared to ALN. The mechanical impact of this altered microporosity structure is unknown, but might serve to enhance, rather than deteriorate bone strength with PTH treatment, as smaller osteocyte lacunae may be better able to

  6. Changes in Intracortical Microporosities Induced by Pharmaceutical Treatment of Osteoporosis as Detected by High Resolution Micro-CT

    PubMed Central

    Tommasini, Steven M.; Trinward, Andrea; Acerbo, Alvin S.; De Carlo, Francesco; Miller, Lisa M.; Judex, Stefan

    2012-01-01

    Bone’s microporosities play important biologic and mechanical roles. Here, we quantified 3D changes in cortical osteocyte-lacunae and other small porosities induced by estrogen withdrawal and two different osteoporosis treatments. Unlike 2D measurements, these data collected via synchrotron radiation-based μCT describe the size and 3D spatial distribution of a large number of porous structures. Six-month old female Sprague-Dawley rats were separated into four groups of age-matched controls, untreated OVX, OVX treated with PTH, and OVX treated with Alendronate (ALN). Intracortical microporosity of the medial quadrant of the femoral diaphysis was quantified at endosteal, intracortical, and periosteal regions of the samples, allowing the quantification of osteocyte lacunae that were formed primarily before versus after the start of treatment. Across the overall thickness of the medial cortex, lacunar volume fraction (Lc.V/TV) was significantly lower in ALN treated rats compared to PTH. In the endosteal region, average osteocyte lacunar volume () of untreated OVX rats was significantly lower than in age-matched controls, indicating a decrease in osteocyte lacunar size in bone formed on the endosteal surface after estrogen withdrawal. The effect of treatment (OVX, ALN, PTH) on the number of lacunae per tissue volume (Lc.N/TV) was dependent on the specific location within the cortex (endosteal, intracortical, periosteal). In both the endosteal and intracortical regions, Lc.N/TV was significantly lower in ALN than in untreated OVX, suggesting a site-specific effect in osteocyte lacuna density with ALN treatment. There also were a significantly greater number of small pores (5–100 μm3 in volume) in the endosteal region for PTH compared to ALN. The mechanical impact of this altered microporosity structure is unknown, but might serve to enhance, rather than deteriorate bone strength with PTH treatment, as smaller osteocyte lacunae may be better able to absorb

  7. High-resolution three-dimensional diffusion-weighted MRI/CT image data fusion for cholesteatoma surgical planning: a feasibility study.

    PubMed

    Yamashita, Koji; Hiwatashi, Akio; Togao, Osamu; Kikuchi, Kazufumi; Matsumoto, Nozomu; Obara, Makoto; Yoshiura, Takashi; Honda, Hiroshi

    2015-12-01

    The aim of the study was to assess the feasibility of high-resolution three-dimensional diffusion-weighted images (HR3D-DWIs)/multi-detector row CT (MDCT) images' data fusion for surgical planning for cholesteatoma. A total of 12 patients (7 male and 5 female; age range 11-72 years; mean 38.1 years) with cholesteatoma underwent preoperative MRI using a 3.0-T clinical unit and an 8-channel array-head coil. For each subject, HR3D-DWIs were obtained using a turbo field-echo with diffusion-sensitized driven-equilibrium preparation with 1.5 mm iso-voxel dimension. These patients also underwent MDCT with a slice thickness of 0.5 mm. Fusion of the HR3D-DWIs and MDCT images was performed using an automated rigid registration and subsequent manual fine-tuning by a board-certified neuroradiologist on a workstation. Fused images were compared to CT and findings confirmed based on operation reports. On the fused images, the extent of the cholesteatoma, which was depicted as a conspicuous high-intensity lesion could be easily evaluated with background bony structures. In all patients, the location and extent of the cholesteatoma on the fused images corresponded well with the intraoperative findings. Image fusion between HR3D-DWIs and MDCT images is feasible, and provides valuable preoperative information for surgical planning to otorhinolaryngologists. PMID:25543305

  8. Statistical Analysis of Yarn Feature Parameters in C/Epoxy Plain-Weave Composite Using Micro CT with High-Resolution Lens-Coupled Detector

    NASA Astrophysics Data System (ADS)

    Wang, Hao; Wang, Zhong-wei

    2016-08-01

    C/Epoxy plain-weave composite is difficult to clear imaging in Micro CT with flat panel detector due to the similar atomic numbers of component materials. To solve this problem, a new Micro CT equipment with high-resolution lens-coupled detector is used to reconstruct 3D images of C/Epoxy. Slice data correction with ellipse projection is used to acquire real yarn normal cross-section information. A reference period method suitable for plain-weave composite is then detailed to evaluate statistical properties of yarn feature parameters. In the process of determination of real extreme slices, dislocation phenomenon existed in the laminated composite is discovered. Several possible reasons caused this phenomenon are discussed. Systematic trends, standard deviations and correlation lengths of stochastic deviations with original and corrected data are evaluated respectively by the application of reference period method. The statistical results show that mean out-of-plane yarn waviness, semi-axes, cross-section area and aspect ratio exhibit periodic characteristics, and the maximum effect of slice data correction on all statistical properties of feature parameters is twist angle.

  9. Statistical Analysis of Yarn Feature Parameters in C/Epoxy Plain-Weave Composite Using Micro CT with High-Resolution Lens-Coupled Detector

    NASA Astrophysics Data System (ADS)

    Wang, Hao; Wang, Zhong-wei

    2016-02-01

    C/Epoxy plain-weave composite is difficult to clear imaging in Micro CT with flat panel detector due to the similar atomic numbers of component materials. To solve this problem, a new Micro CT equipment with high-resolution lens-coupled detector is used to reconstruct 3D images of C/Epoxy. Slice data correction with ellipse projection is used to acquire real yarn normal cross-section information. A reference period method suitable for plain-weave composite is then detailed to evaluate statistical properties of yarn feature parameters. In the process of determination of real extreme slices, dislocation phenomenon existed in the laminated composite is discovered. Several possible reasons caused this phenomenon are discussed. Systematic trends, standard deviations and correlation lengths of stochastic deviations with original and corrected data are evaluated respectively by the application of reference period method. The statistical results show that mean out-of-plane yarn waviness, semi-axes, cross-section area and aspect ratio exhibit periodic characteristics, and the maximum effect of slice data correction on all statistical properties of feature parameters is twist angle.

  10. Development of a High-Resolution Melting Approach for Scanning Beta Globin Gene Point Mutations in the Greek and Other Mediterranean Populations.

    PubMed

    Chassanidis, Christos; Boutou, Effrossyni; Voskaridou, Ersi; Balassopoulou, Angeliki

    2016-01-01

    Beta-thalassaemia is one of the most common autosomal recessive disorders worldwide. The disease's high incidence, which is observed in the broader Mediterranean area has led to the establishment of molecular diagnostics' assays to prevent affected births. Therefore, the development of a reliable, cost-effective and rapid scanning method for β globin gene point mutations, easily adapted to a routine laboratory, is absolutely essential. Here, we describe, for the first time, the development of a High-Resolution Melting Analysis (HRMA) approach, suitable for scanning the particularly heterogeneous beta globin gene mutations present in the Greek population, and thus adaptable to the Mediterranean and other areas where these mutations have been identified. Within this context, β globin gene regions containing mutations frequently identified in the Greek population were divided in ten overlapping amplicons. Our reactions' setup allowed for the simultaneous amplification of multiple primer sets and partial multiplexing, thereby resulting in significant reduction of the experimental time. DNA samples from β-thalassaemia patients/carriers with defined genotypes were tested. Distinct genotypes displayed distinguishable melting curves, enabling accurate detection of mutations. The described HRMA can be adapted to a high-throughput level. It represents a rapid, simple, cost-effective, reliable, highly feasible and sensitive method for β-thalassaemia gene scanning. PMID:27351925

  11. Development of a High-Resolution Melting Approach for Scanning Beta Globin Gene Point Mutations in the Greek and Other Mediterranean Populations

    PubMed Central

    Chassanidis, Christos; Boutou, Effrossyni; Voskaridou, Ersi; Balassopoulou, Angeliki

    2016-01-01

    Beta-thalassaemia is one of the most common autosomal recessive disorders worldwide. The disease’s high incidence, which is observed in the broader Mediterranean area has led to the establishment of molecular diagnostics’ assays to prevent affected births. Therefore, the development of a reliable, cost-effective and rapid scanning method for β globin gene point mutations, easily adapted to a routine laboratory, is absolutely essential. Here, we describe, for the first time, the development of a High-Resolution Melting Analysis (HRMA) approach, suitable for scanning the particularly heterogeneous beta globin gene mutations present in the Greek population, and thus adaptable to the Mediterranean and other areas where these mutations have been identified. Within this context, β globin gene regions containing mutations frequently identified in the Greek population were divided in ten overlapping amplicons. Our reactions’ setup allowed for the simultaneous amplification of multiple primer sets and partial multiplexing, thereby resulting in significant reduction of the experimental time. DNA samples from β-thalassaemia patients/carriers with defined genotypes were tested. Distinct genotypes displayed distinguishable melting curves, enabling accurate detection of mutations. The described HRMA can be adapted to a high-throughput level. It represents a rapid, simple, cost-effective, reliable, highly feasible and sensitive method for β-thalassaemia gene scanning. PMID:27351925

  12. Quaternary sedimentary processes on the northwestern African continental margin - An integrated study using side-scan sonar, high-resolution profiling, and core data

    SciTech Connect

    Masson, D.G.; Huggett, Q.J.; Weaver, P.P.E. ); Kidd, R.B. ); Gardner, J.V. )

    1991-08-01

    Side-scan sonar data, cores, and high-resolution profiles have been used to produce an integrated model of sedimentation for the continental margin west of the Canary Islands. Long-range side-scan sonar (GLORIA) data and a grid of 3.5-kHz profiles, covering some 200,000 km{sup 2} allow a regional appraisal of sedimentation. More detailed studies of selected areas have been undertaken using a new 30 kHz deep-towed side-scan sonar (TOBI) developed by the U.K. Institute of Oceanographic Sciences. Sediment cores have been used both to calibrate acoustic facies identified on sonographs and for detailed stratigraphic studies. The most recent significant sedimentation event in the area is to Saharan Sediment Slide, which carried material from the upper continental slope off West Africa to the edge of the Madeira Abyssal Plain, a distance of some 1000 km. The authors data shows the downslope evolution of the debris flow. Near the Canaries, it is a 20-m-thick deposit rafting coherent blocks of more than 1 km diameter; side-scan records show a strong flow-parallel fabric on a scale of tens of meters. On the lower slope, the debris flow thins to a few meters, the flow fabric disappears, and the rafted blocks decrease to meters in diameter. Side-scan data from the lower slope show that the Saharan Slide buries an older landscape of turbidity current channels, typically 1 km wide and 50 m deep. Evidence from the Madeiran Abyssal Plain indicates a history of large but infrequent turbidity currents, the emplacement of which is related to the effects of sea level changes on the northwest African margin.

  13. An automatic approach for 3D registration of CT scans

    NASA Astrophysics Data System (ADS)

    Hu, Yang; Saber, Eli; Dianat, Sohail; Vantaram, Sreenath Rao; Abhyankar, Vishwas

    2012-03-01

    CT (Computed tomography) is a widely employed imaging modality in the medical field. Normally, a volume of CT scans is prescribed by a doctor when a specific region of the body (typically neck to groin) is suspected of being abnormal. The doctors are required to make professional diagnoses based upon the obtained datasets. In this paper, we propose an automatic registration algorithm that helps healthcare personnel to automatically align corresponding scans from 'Study' to 'Atlas'. The proposed algorithm is capable of aligning both 'Atlas' and 'Study' into the same resolution through 3D interpolation. After retrieving the scanned slice volume in the 'Study' and the corresponding volume in the original 'Atlas' dataset, a 3D cross correlation method is used to identify and register various body parts.

  14. Quantification of emphysema severity by histogram analysis of CT scans.

    PubMed

    Mendonça, Paulo R S; Padfield, Dirk R; Ross, James C; Miller, James V; Dutta, Sandeep; Gautham, Sardar Mal

    2005-01-01

    Emphysema is characterized by the destruction and over distension of lung tissue, which manifest on high resolution computer tomography (CT) images as regions of low attenuation. Typically, it is diagnosed by clinical symptoms, physical examination, pulmonary function tests, and X-ray and CT imaging. In this paper we discuss a quantitative imaging approach to analyze emphysema which employs low-level segmentations of CT images that partition the data into perceptually relevant regions. We constructed multi-dimensional histograms of feature values computed over the image segmentation. For each region in the segmentation, we derive a rich set of feature measurements. While we can use any combination of physical and geometric features, we found that limiting the scope to two features - the mean attenuation across a region and the region area - is effective. The subject histogram is compared to a set of canonical histograms representative of various stages of emphysema using the Earth Mover's Distance metric. Disease severity is assigned based on which canonical histogram is most similar to the subject histogram. Experimental results with 81 cases of emphysema at different stages of disease progression show good agreement against the reading of an expert radiologist. PMID:16685912

  15. A high-resolution photon-counting breast CT system with tensor-framelet based iterative image reconstruction for radiation dose reduction

    NASA Astrophysics Data System (ADS)

    Ding, Huanjun; Gao, Hao; Zhao, Bo; Cho, Hyo-Min; Molloi, Sabee

    2014-10-01

    Both computer simulations and experimental phantom studies were carried out to investigate the radiation dose reduction with tensor framelet based iterative image reconstruction (TFIR) for a dedicated high-resolution spectral breast computed tomography (CT) based on a silicon strip photon-counting detector. The simulation was performed with a 10 cm-diameter water phantom including three contrast materials (polyethylene, 8 mg ml-1 iodine and B-100 bone-equivalent plastic). In the experimental study, the data were acquired with a 1.3 cm-diameter polymethylmethacrylate (PMMA) phantom containing iodine in three concentrations (8, 16 and 32 mg ml-1) at various radiation doses (1.2, 2.4 and 3.6 mGy) and then CT images were reconstructed using the filtered-back-projection (FBP) technique and the TFIR technique, respectively. The image quality between these two techniques was evaluated by the quantitative analysis on contrast-to-noise ratio (CNR) and spatial resolution that was evaluated using the task-based modulation transfer function (MTF). Both the simulation and experimental results indicated that the task-based MTF obtained from TFIR reconstruction with one-third of the radiation dose was comparable to that from the FBP reconstruction for low contrast target. For high contrast target, the TFIR was substantially superior to the FBP reconstruction in terms of spatial resolution. In addition, TFIR was able to achieve a factor of 1.6-1.8 increase in CNR, depending on the target contrast level. This study demonstrates that the TFIR can reduce the required radiation dose by a factor of two-thirds for a CT image reconstruction compared to the FBP technique. It achieves much better CNR and spatial resolution for high contrast target in addition to retaining similar spatial resolution for low contrast target. This TFIR technique has been implemented with a graphic processing unit system and it takes approximately 10 s to reconstruct a single-slice CT image

  16. A high-resolution photon-counting breast CT system with tensor-framelet based iterative image reconstruction for radiation dose reduction.

    PubMed

    Ding, Huanjun; Gao, Hao; Zhao, Bo; Cho, Hyo-Min; Molloi, Sabee

    2014-10-21

    Both computer simulations and experimental phantom studies were carried out to investigate the radiation dose reduction with tensor framelet based iterative image reconstruction (TFIR) for a dedicated high-resolution spectral breast computed tomography (CT) based on a silicon strip photon-counting detector. The simulation was performed with a 10 cm-diameter water phantom including three contrast materials (polyethylene, 8 mg ml(-1) iodine and B-100 bone-equivalent plastic). In the experimental study, the data were acquired with a 1.3 cm-diameter polymethylmethacrylate (PMMA) phantom containing iodine in three concentrations (8, 16 and 32 mg ml(-1)) at various radiation doses (1.2, 2.4 and 3.6 mGy) and then CT images were reconstructed using the filtered-back-projection (FBP) technique and the TFIR technique, respectively. The image quality between these two techniques was evaluated by the quantitative analysis on contrast-to-noise ratio (CNR) and spatial resolution that was evaluated using the task-based modulation transfer function (MTF). Both the simulation and experimental results indicated that the task-based MTF obtained from TFIR reconstruction with one-third of the radiation dose was comparable to that from the FBP reconstruction for low contrast target. For high contrast target, the TFIR was substantially superior to the FBP reconstruction in terms of spatial resolution. In addition, TFIR was able to achieve a factor of 1.6-1.8 increase in CNR, depending on the target contrast level. This study demonstrates that the TFIR can reduce the required radiation dose by a factor of two-thirds for a CT image reconstruction compared to the FBP technique. It achieves much better CNR and spatial resolution for high contrast target in addition to retaining similar spatial resolution for low contrast target. This TFIR technique has been implemented with a graphic processing unit system and it takes approximately 10 s to reconstruct a single-slice CT image

  17. Interactive annotation of textures in thoracic CT scans

    NASA Astrophysics Data System (ADS)

    Kockelkorn, Thessa T. J. P.; de Jong, Pim A.; Gietema, Hester A.; Grutters, Jan C.; Prokop, Mathias; van Ginneken, Bram

    2010-03-01

    This study describes a system for interactive annotation of thoracic CT scans. Lung volumes in these scans are segmented and subdivided into roughly spherical volumes of interest (VOIs) with homogeneous texture using a clustering procedure. For each 3D VOI, 72 features are calculated. The observer inspects the scan to determine which textures are present and annotates, with mouse clicks, several VOIs of each texture. Based on these annotations, a k-nearest-neighbor classifier is trained, which classifies all remaining VOIs in the scan. The algorithm then presents a slice with suggested annotations to the user, in which the user can correct mistakes. The classifier is retrained, taking into account these new annotations, and the user is presented another slice for correction. This process continues until at least 50% of all lung voxels in the scan have been classified. The remaining VOIs are classified automatically. In this way, the entire lung volume is annotated. The system has been applied to scans of patients with usual and non-specific interstitial pneumonia. The results of interactive annotation are compared to a setup in which the user annotates all predefined VOIs manually. The interactive system is 3.7 times as fast as complete manual annotation of VOIs and differences between the methods are similar to interobserver variability. This is a first step towards precise volumetric quantitation of texture patterns in thoracic CT in clinical research and in clinical practice.

  18. High Resolution Trichromatic Road Surface Scanning with a Line Scan Camera and Light Emitting Diode Lighting for Road-Kill Detection.

    PubMed

    Lopes, Gil; Ribeiro, A Fernando; Sillero, Neftalí; Gonçalves-Seco, Luís; Silva, Cristiano; Franch, Marc; Trigueiros, Paulo

    2016-01-01

    This paper presents a road surface scanning system that operates with a trichromatic line scan camera with light emitting diode (LED) lighting achieving road surface resolution under a millimeter. It was part of a project named Roadkills-Intelligent systems for surveying mortality of amphibians in Portuguese roads, sponsored by the Portuguese Science and Technology Foundation. A trailer was developed in order to accommodate the complete system with standalone power generation, computer image capture and recording, controlled lighting to operate day or night without disturbance, incremental encoder with 5000 pulses per revolution attached to one of the trailer wheels, under a meter Global Positioning System (GPS) localization, easy to utilize with any vehicle with a trailer towing system and focused on a complete low cost solution. The paper describes the system architecture of the developed prototype, its calibration procedure, the performed experimentation and some obtained results, along with a discussion and comparison with existing systems. Sustained operating trailer speeds of up to 30 km/h are achievable without loss of quality at 4096 pixels' image width (1 m width of road surface) with 250 µm/pixel resolution. Higher scanning speeds can be achieved by lowering the image resolution (120 km/h with 1 mm/pixel). Computer vision algorithms are under development to operate on the captured images in order to automatically detect road-kills of amphibians. PMID:27104535

  19. High Resolution Trichromatic Road Surface Scanning with a Line Scan Camera and Light Emitting Diode Lighting for Road-Kill Detection

    PubMed Central

    Lopes, Gil; Ribeiro, A. Fernando; Sillero, Neftalí; Gonçalves-Seco, Luís; Silva, Cristiano; Franch, Marc; Trigueiros, Paulo

    2016-01-01

    This paper presents a road surface scanning system that operates with a trichromatic line scan camera with light emitting diode (LED) lighting achieving road surface resolution under a millimeter. It was part of a project named Roadkills—Intelligent systems for surveying mortality of amphibians in Portuguese roads, sponsored by the Portuguese Science and Technology Foundation. A trailer was developed in order to accommodate the complete system with standalone power generation, computer image capture and recording, controlled lighting to operate day or night without disturbance, incremental encoder with 5000 pulses per revolution attached to one of the trailer wheels, under a meter Global Positioning System (GPS) localization, easy to utilize with any vehicle with a trailer towing system and focused on a complete low cost solution. The paper describes the system architecture of the developed prototype, its calibration procedure, the performed experimentation and some obtained results, along with a discussion and comparison with existing systems. Sustained operating trailer speeds of up to 30 km/h are achievable without loss of quality at 4096 pixels’ image width (1 m width of road surface) with 250 µm/pixel resolution. Higher scanning speeds can be achieved by lowering the image resolution (120 km/h with 1 mm/pixel). Computer vision algorithms are under development to operate on the captured images in order to automatically detect road-kills of amphibians. PMID:27104535

  20. Semi-automatic classification of textures in thoracic CT scans

    NASA Astrophysics Data System (ADS)

    Kockelkorn, Thessa T. J. P.; de Jong, Pim A.; Schaefer-Prokop, Cornelia M.; Wittenberg, Rianne; Tiehuis, Audrey M.; Gietema, Hester A.; Grutters, Jan C.; Viergever, Max A.; van Ginneken, Bram

    2016-08-01

    The textural patterns in the lung parenchyma, as visible on computed tomography (CT) scans, are essential to make a correct diagnosis in interstitial lung disease. We developed one automatic and two interactive protocols for classification of normal and seven types of abnormal lung textures. Lungs were segmented and subdivided into volumes of interest (VOIs) with homogeneous texture using a clustering approach. In the automatic protocol, VOIs were classified automatically by an extra-trees classifier that was trained using annotations of VOIs from other CT scans. In the interactive protocols, an observer iteratively trained an extra-trees classifier to distinguish the different textures, by correcting mistakes the classifier makes in a slice-by-slice manner. The difference between the two interactive methods was whether or not training data from previously annotated scans was used in classification of the first slice. The protocols were compared in terms of the percentages of VOIs that observers needed to relabel. Validation experiments were carried out using software that simulated observer behavior. In the automatic classification protocol, observers needed to relabel on average 58% of the VOIs. During interactive annotation without the use of previous training data, the average percentage of relabeled VOIs decreased from 64% for the first slice to 13% for the second half of the scan. Overall, 21% of the VOIs were relabeled. When previous training data was available, the average overall percentage of VOIs requiring relabeling was 20%, decreasing from 56% in the first slice to 13% in the second half of the scan.

  1. Diffusible iodine-based contrast-enhanced computed tomography (diceCT): an emerging tool for rapid, high-resolution, 3-D imaging of metazoan soft tissues.

    PubMed

    Gignac, Paul M; Kley, Nathan J; Clarke, Julia A; Colbert, Matthew W; Morhardt, Ashley C; Cerio, Donald; Cost, Ian N; Cox, Philip G; Daza, Juan D; Early, Catherine M; Echols, M Scott; Henkelman, R Mark; Herdina, A Nele; Holliday, Casey M; Li, Zhiheng; Mahlow, Kristin; Merchant, Samer; Müller, Johannes; Orsbon, Courtney P; Paluh, Daniel J; Thies, Monte L; Tsai, Henry P; Witmer, Lawrence M

    2016-06-01

    Morphologists have historically had to rely on destructive procedures to visualize the three-dimensional (3-D) anatomy of animals. More recently, however, non-destructive techniques have come to the forefront. These include X-ray computed tomography (CT), which has been used most commonly to examine the mineralized, hard-tissue anatomy of living and fossil metazoans. One relatively new and potentially transformative aspect of current CT-based research is the use of chemical agents to render visible, and differentiate between, soft-tissue structures in X-ray images. Specifically, iodine has emerged as one of the most widely used of these contrast agents among animal morphologists due to its ease of handling, cost effectiveness, and differential affinities for major types of soft tissues. The rapid adoption of iodine-based contrast agents has resulted in a proliferation of distinct specimen preparations and scanning parameter choices, as well as an increasing variety of imaging hardware and software preferences. Here we provide a critical review of the recent contributions to iodine-based, contrast-enhanced CT research to enable researchers just beginning to employ contrast enhancement to make sense of this complex new landscape of methodologies. We provide a detailed summary of recent case studies, assess factors that govern success at each step of the specimen storage, preparation, and imaging processes, and make recommendations for standardizing both techniques and reporting practices. Finally, we discuss potential cutting-edge applications of diffusible iodine-based contrast-enhanced computed tomography (diceCT) and the issues that must still be overcome to facilitate the broader adoption of diceCT going forward. PMID:26970556

  2. The use and benefit of stereology in choosing a CT scanning protocol for the lung

    NASA Astrophysics Data System (ADS)

    Markowitz, Zvi; Loew, Murray H.; Reinhardt, Joseph M.

    2005-04-01

    When a patient is examined at different times using different protocols, how can we know whether the observed differences in the area or volume estimate are due to the patient, the protocol, or both? Specifically, we ask what is the smallest difference in lung volume that can be computed reliably when two sets of CT data are acquired by varying the number and thickness of the slices, but while holding constant the in-plane resolution. The accuracy and precision of the total lung volume estimates are calculated based on the principles of stereology using uniform design sampling. Comparisons of the lung volume estimate based on fewer slices using stereological principles are employed. A formal test made of the hypothesis that the use of fewer slices can yield satisfactory precision of the lung estimate. It is known that estimation of lung volume based on CT images is sensitive to the acquisition parameters used during scanning: dose, scan time, number of cross-sectional slices, and slice collimation. Those parameters are very different depending on the lung examination required: routine studies or high-resolution detailed studies. Thus, if different protocols are to be used confidently for volume estimation, it is important to understand the factors that influence volume estimate accuracy and to provide the associated confidence intervals for the measurements.

  3. Double-low protocol for hepatic dynamic CT scan

    PubMed Central

    Zhang, Xiuli; Li, Shaodong; Liu, Wenlou; Huang, Ning; Li, Jingjing; Cheng, Li; Xu, Kai

    2016-01-01

    Abstract The radiation-induced carcinogenesis from computed tomography (CT) and iodine contrast agent induced nephropathy has attracted international attention. The reduction of the radiation dose and iodine intake in CT scan is always a direction for researchers to strive. The purpose of this study was to evaluate the feasibility of a “double-low” (i.e., low tube voltage and low-dose iodine contrast agent) scanning protocol for dynamic hepatic CT with the adaptive statistical iterative reconstruction (ASIR) in patients with a body mass index (BMI) of 18.5 to 27.9 kg/m2. A total of 128 consecutive patients with a BMI between 18.5 and 27.9 kg/m2 were randomly assigned into 3 groups according to tube voltage, iodine contrast agent, and reconstruction algorithms. Group A (the “double-low” protocol): 100 kVp tube voltage with 40% ASIR, iodixanol at 270 mg I/mL, group B: 120 kVp tube voltage with filtered back projection (FBP), iodixanol at 270 mg I/ mL, and group C: 120 kVp tube voltage with FBP, ioversol at 350 mg I/ mL. The volume CT dose index (CTDIvol) and effective dose (ED) in group A were lower than those in group B and C (all P < 0.01). The iodine intake in group A was decreased by approximately 26.5% than group C, whereas no statistical difference was observed between group A and B (P > 0.05). There was no significant difference of the CT values between group A and C (P > 0.05), which both showed higher CT values than that in group B (P < 0.001). However, no statistic difference was observed in the contrast-to-noise ratio (CNR), the signal-to-noise ratio (SNR), and image-quality scores among the 3 groups (all P > 0.05). Near-perfect consistency of the evaluation for group A, B, and C (Kenall's W = 0.921, 0.874, and 0.949, respectively) was obtained by the 4 readers with respect to the overall image quality. These results suggested that the “double-low” protocol with ASIR algorithm for multi-phase hepatic CT scan

  4. Validation of high-resolution 3D patient QA for proton PBS and IMPT using laser CT of improved polymer gel dosimeters

    NASA Astrophysics Data System (ADS)

    Cardin, A.; Ding, X.; Kassaee, A.; Lin, L.; Maryanski, M. J.; Avery, S.

    2015-01-01

    Laser CT scanning of LET-independent BANG3-Pro2® polymer gel dosimeters has recently shown potential in proton dosimetry. However, raw materials' impurities impart some variability. This study aimed to validate a new method of compensating for this variability, and to validate the suitability of the improved dosimeter for patient-specific QA in pencil beam scanning (PBS) and IMPT. Six modifications of the BANG3-Pro2® gel dosimeter were analysed for their sensitivity to proton dose and to LET. One formulation was selected for a clinical QA feasibility study, in which one composite IMPT plan, two single-field IMPT plans, and one SFUD plan were delivered to identical gel phantoms. New commercial VOLQATM software (beta version) was used for data analysis. Both validations were successful.

  5. Variation of quantitative emphysema measurements from CT scans

    NASA Astrophysics Data System (ADS)

    Keller, Brad M.; Reeves, Anthony P.; Henschke, Claudia I.; Barr, R. Graham; Yankelevitz, David F.

    2008-03-01

    Emphysema is a lung disease characterized by destruction of the alveolar air sacs and is associated with long-term respiratory dysfunction. CT scans allow for imaging of the anatomical basis of emphysema, and several measures have been introduced for the quantification of the extent of disease. In this paper we compare these measures for repeatability over time. The measures of interest in this study are emphysema index, mean lung density, histogram percentile, and the fractal dimension. To allow for direct comparisons, the measures were normalized to a 0-100 scale. These measures have been computed for a set of 2,027 scan pairs in which the mean interval between scans was 1.15 years (σ: 93 days). These independent pairs were considered with respect to three different scanning conditions (a) 223 pairs where both were scanned with a 5 mm slice thickness protocol, (b) 695 with the first scanned with the 5 mm protocol and the second with a 1.25 mm protocol, and (c) 1109 pairs scanned both times using a 1.25 mm protocol. We found that average normalized emphysema index and histogram percentiles scores increased by 5.9 and 11 points respectively, while the fractal dimension showed stability with a mean difference of 1.2. We also found, a 7 point bias introduced for emphysema index under condition (b), and that the fractal dimension measure is least affected by scanner parameter changes.

  6. Suomi NPP/JPSS Cross-track Infrared Sounder (CrIS): Calibration Validation With The Aircraft Based Scanning High-resolution Interferometer Sounder (S-HIS)

    NASA Astrophysics Data System (ADS)

    Taylor, J. K.; Revercomb, H. E.; Tobin, D.; Knuteson, R. O.; Best, F. A.; Adler, D. A.; Pettersen, C.; Garcia, R. K.; Gero, P.

    2013-12-01

    To better accommodate climate change monitoring and improved weather forecasting, there is an established need for higher accuracy and more refined error characterization of radiance measurements from space and the corresponding geophysical products. This need has led to emphasizing direct tests of on-orbit performance, referred to as validation. Currently, validation typically involves (1) collecting high quality reference data from airborne and/or ground-based instruments during the satellite overpass, and (2) a detailed comparison between the satellite-based radiance measurements and the corresponding high quality reference data. Additionally, for future missions technology advancements at the University of Wisconsin Space Science and Engineering Center (UW-SSEC) have led to the development of an on-orbit absolute radiance reference utilizing miniature phase change cells to provide direct on-orbit traceability to International Standards (SI). The detailed comparison between the satellite-based radiance measurements and the corresponding measurements made from a high-altitude aircraft must account for instrument noise and scene variations, as well as differences in instrument observation altitudes, view angles, spatial footprints, and spectral response. Most importantly, for the calibration validation process to be both accurate and repeatable the reference data instrument must be extremely well characterized and understood, carefully maintained, and accurately calibrated, with traceability to absolute standards. The Scanning High-resolution Interferometer Sounder (S-HIS) meets and exceeds these requirements and has proven to do so on multiple airborne platforms, each with significantly different instrument operating environments. The Cross-track Infrared Sounder (CrIS) on Suomi NPP, launched 28 October 2011, is designed to give scientists more refined information about Earth's atmosphere and improve weather forecasts and our understanding of climate. CrIS is an

  7. Radiation dose reduction in pediatric abdominal CT scanning

    SciTech Connect

    Kamel, I.R.

    1993-01-01

    A clinical trial was designed to test whether a significantly lower radiation dose technique could be used for pediatric abdominal CT scanning without loss of diagnostic image quality. The study included pediatric patients referred to radiology from the Children's Hospital and clinics at The University of Michigan. Seventy-eight cases were included in the study, 36 cases in the experimental group and 42 in the control group. Patient characteristics in both groups were comparable in every respect except for the technical factors used to expose the pelvis. Patients in the experimental group were scanned with a technique using 80 mAs while those in the control group were scanned with the conventional technique of 240 mAs. Therefore, the radiation dose to the pelvis was three times higher in the control group than in the experimental group. Scans were evaluated by two experienced pediatric radiologists who assessed anatomical details, image resolution and the degree of confidence in reaching a diagnosis. The low-mAs technique did not result in reduction of diagnostic image quality or the confidence in reaching a diagnosis. In conclusion, the radiation dose resulting from pediatric CT of the pelvis may be reduced by a factor of three with equivalent medical benefit.

  8. Very high resolution radiometer

    NASA Technical Reports Server (NTRS)

    Aronson, A. I.

    1974-01-01

    A primary sensor used in environmental and earth-resource observation, the Very High Resolution Radiometer (VHRR) was designed for use on the ITOS D series spacecraft. The VHRR provides a 0.47 mile resolution made possible with a mercury-cadmium-telluride detector cooled to approximately 105 K by a passive radiator cooler. The components of this system are described. The optical subsystem of the VHRR consists of a scanning mirror, a Dall-Kirkham telescope, a dichroic beam splitter, relay lenses, spectral filters, and an IR detector. Signal electronics amplify and condition the signals from the infrared and visible light detector. Sync generator electronics provides the necessary time signals. Scan-drive electronics is used for commutation of the motor winding, velocity, and phase control. A table lists the performance parameters of the VHRR.

  9. The neural elements in the lining of the ventricular-subventricular zone: making an old story new by high-resolution scanning electron microscopy

    PubMed Central

    Haemmerle, Carlos Alexandre dos Santos; Nogueira, Maria Inês; Watanabe, Ii-sei

    2015-01-01

    The classical description of the neural elements that compose the lining of brain ventricles introduces us to the single layer of ependymal cells. However, new findings, especially in the lateral ventricle (LV)—the major niche for the generation of new neurons in the adult brain—have provided information about additional cell elements that influence the organization of this part of the ventricular system and produce important contributions to neurogenesis. To complement the cell neurochemistry findings, we present a three-dimensional in situ description that demonstrates the anatomical details of the different types of ciliated cells and the innervation of these elements. After processing adult rat brains for ultrastructural analysis by high-resolution scanning electron microscopy (HRSEM) and transmission electron microscopy, we observed a heterogeneous pattern of cilia distribution at the different poles of the LV surface. Furthermore, we describe the particular three-dimensional aspects of the ciliated cells of the LV, in addition the fiber bundles and varicose axons surrounding these cells. Therefore, we provide a unique ultrastructural description of the three-dimensional in situ organization of the LV surface, highlighting its innervation, to corroborate the available neurochemical and functional findings regarding the factors that regulate this neurogenic niche. PMID:26578896

  10. Structural Evidence for Actin-like Filaments in Toxoplasma gondii Using High-Resolution Low-Voltage Field Emission Scanning Electron Microscopy

    NASA Astrophysics Data System (ADS)

    Schatten, Heide; Sibley, L. David; Ris, Hans

    2003-08-01

    The protozoan parasite Toxoplasma gondii is representative of a large group of parasites within the phylum Apicomplexa, which share a highly unusual motility system that is crucial for locomotion and active host cell invasion. Despite the importance of motility in the pathology of these unicellular organisms, the motor mechanisms for locomotion remain uncertain, largely because only limited data exist about composition and organization of the cytoskeleton. By using cytoskeleton stabilizing protocols on membrane-extracted parasites and novel imaging with high-resolution low-voltage field emission scanning electron microscopy (LVFESEM), we were able to visualize for the first time a network of actin-sized filaments just below the cell membrane. A complex cytoskeletal network remained after removing the actin-sized fibers with cytochalasin D, revealing longitudinally arranged, subpellicular microtubules and intermediate-sized fibers of 10 nm, which, in stereo images, are seen both above and below the microtubules. These approaches open new possibilities to characterize more fully the largely unexplored and unconventional cytoskeletal motility complex in apicomplexan parasites.

  11. In situ investigation of ion-induced dewetting of a thin iron-oxide film on silicon by high resolution scanning electron microscopy

    NASA Astrophysics Data System (ADS)

    Amirthapandian, S.; Schuchart, F.; Garmatter, D.; Bolse, W.

    2012-11-01

    Using our new in situ high resolution scanning electron microscope, which is integrated into the UNILAC ion beamline at the Helmholtzzentrum für Schwerionenforschung (GSI) in Darmstadt, Germany, we investigated the swift heavy ion induced dewetting of a thin iron oxide layer on Si. Besides heterogeneous hole nucleation at defects and spontaneous (homogeneous) hole nucleation, we could clearly identify a dewetting mechanism, which is similar to the spinodal dewetting observed for liquid films. Instead of being due to capillary waves, it is based on a stress induced surface instability. The latter results in the formation of a wavy surface with constant dominant wave-length and increasing amplitude during ion irradiation. Dewetting sets in as soon as the wave-troughs reach the film-substrate interface. Inspection of the hole radii and rim shapes indicates that removal of the material from the hole area occurs mainly by plastic deformation at the inner boundary and ion induced viscous flow in the peripheral zone due to surface tension.

  12. Complications in CT-guided Procedures: Do We Really Need Postinterventional CT Control Scans?

    SciTech Connect

    Nattenmüller, Johanna Filsinger, Matthias Bryant, Mark Stiller, Wolfram Radeleff, Boris Grenacher, Lars Kauczor, Hans-Ullrich Hosch, Waldemar

    2013-06-19

    PurposeThe aim of this study is twofold: to determine the complication rate in computed tomography (CT)-guided biopsies and drainages, and to evaluate the value of postinterventional CT control scans.MethodsRetrospective analysis of 1,067 CT-guided diagnostic biopsies (n = 476) and therapeutic drainages (n = 591) in thoracic (n = 37), abdominal (n = 866), and musculoskeletal (ms) (n = 164) locations. Severity of any complication was categorized as minor or major. To assess the need for postinterventional CT control scans, it was determined whether complications were detected clinically, on peri-procedural scans or on postinterventional scans only.ResultsThe complication rate was 2.5 % in all procedures (n = 27), 4.4 % in diagnostic punctures, and 1.0 % in drainages; 13.5 % in thoracic, 2.0 % in abdominal, and 3.0 % in musculoskeletal procedures. There was only 1 major complication (0.1 %). Pneumothorax (n = 14) was most frequent, followed by bleeding (n = 9), paresthesia (n = 2), material damage (n = 1), and bone fissure (n = 1). Postinterventional control acquisitions were performed in 65.7 % (701 of 1,067). Six complications were solely detectable in postinterventional control acquisitions (3 retroperitoneal bleeds, 3 pneumothoraces); all other complications were clinically detectable (n = 4) and/or visible in peri-interventional controls (n = 21).ConclusionComplications in CT-guided interventions are rare. Of these, thoracic interventions had the highest rate, while pneumothoraces and bleeding were most frequent. Most complications can be detected clinically or peri-interventionally. To reduce the radiation dose, postinterventional CT controls should not be performed routinely and should be restricted to complicated or retroperitoneal interventions only.

  13. The high resolution topographic evolution of an active retrogressive thaw slump compiled from a decade of photography, ground surveys, laser scans and satellite imagery

    NASA Astrophysics Data System (ADS)

    Crosby, B. T.; Barnhart, T. B.; Rowland, J. C.

    2015-12-01

    Remote sensing imagery has enables the temporal reconstruction of thermal erosion features including lakes, shorelines and hillslope failures in remote Arctic locations, yet these planar data limit analysis to lines and areas. This study explores the application of varying techniques to reconstruct the three dimensional evolution of a single thermal erosion feature using a mixture of opportunistic oblique photos, ground surveys and satellite imagery. At the Selawik River retrogressive thaw slump in northwest Alaska, a bush plane collected oblique aerial photos when the feature was first discovered in 2004 and in subsequent years. These images were recently processed via Structure from Motion to generate georeferenced point clouds for the years prior to the initiation of our research. High resolution ground surveys in 2007, 2009 and 2010 were completed using robotic total station. Terrestrial laser scans (TLS) were collected in the summers of 2011 and 2012. Analysis of stereo satellite imagery from 2012 and 2015 enable continued monitoring of the feature after ground campaigns ended. As accurate coregistraion between point clouds is vital to topographic change detection, all prior and subsequent datasets were georeferenced to stable features observed in the 2012 TLS scan. Though this coregistration introduces uncertainty into each image, the magnitudes of uncertainty are significantly smaller than the topographic changes detected. Upslope retreat of the slump headwall generally decreases over time as the slump floor progresses from a highly dissected gully topography to a low relief, earthflow dominated depositional plane. The decreasing slope of the slump floor diminishes transport capacity, resulting in the progressive burial of the slump headwall, thus decreasing headwall retreat rates. This self-regulation of slump size based on feature relief and transport capacity suggests a capacity to predict the maximum size a given feature can expand to before

  14. Bombesin receptors and transplanted stem cells in rat brain: High-resolution scan with 99mTc BN1.1

    NASA Astrophysics Data System (ADS)

    Scopinaro, F.; Paschali, E.; Di Santo, G.; Antonellis, T.; Massari, R.; Trotta, C.; Gourni, H.; Bouziotis, P.; David, V.; Soluri, A.; Varvarigou, A. D.

    2006-12-01

    The aim of this work is to detect the presence of transplanted stem cells (TSC) in rat brain with high-resolution (HR) scintigraphy and labelled bombesin (BN). BN is a morphogen for Central Nervous System (CNS) as well as for other organs: CNS-oriented TSC over-express BN Receptors (BNR). BN is also a neurotransmitter and modulates several functions of CNS. 99mTc labelled BN-like peptide scan of CNS is the ideal method to detect growing TSC once knowing normal distribution of BNRs in CNS. HR Planar and single photon emission computerized tomography (SPECT) images of rat brain were performed with new HR detectors (Li-tech, Italy). Pertechnetate, 99mTc HMPAO and the new 99mTc BN1.1 (patented) were i.v. administered in five rats. HR SPECT of 99mTc BN1.1 detected olfactory tract, fronto-lateral cortex, cerebellum, basal ganglia and amygdale. Results of SPECT were confirmed by bio-distribution study performed after autopsy of three of the five rats. The remaining two rats underwent cerebral lesions followed by transplant of TSC. Three months later, HR scintigraphy was repeated and showed images completely different from previous basal study, with hot spot of 99mTc BN1.1 corresponding to the site of TSC transplant. Immuno-histochemistry confirmed the presence of viable TSC. Not only 99mTc BN1.1 HR scan showed viability of transplanted TSC but also the "background brain" was the still now unknown map of BNR in mammalian brain.

  15. Linking playa surface dust emission potential to feedbacks between surface moisture and salt crust expansion through high resolution terrestrial laser scanning measurements

    NASA Astrophysics Data System (ADS)

    Nield, J. M.; King, J.; Wiggs, G.

    2012-12-01

    The dust emissivity of salt pans (or playas) can be significant but is controlled by interactions between wind erosivity, surface moisture, salt chemistry and crust morphology. These surface properties influence the aeolian transport threshold and can be highly variable over both short temporal and spatial scales. In the past, field studies have been hampered by practical difficulties in accurately measuring properties controlling sediment availability at the surface in high resolution. Studies typically therefore, have investigated large scale monthly or seasonal change using remote sensing and assume a homogeneous surface when predicting dust emissivity. Here we present the first high resolution measurements (sub-cm) of salt crust expansion related to changes in diurnal moisture over daily and weekly time periods using terrestrial laser scanning (TLS, ground-based LiDAR) on Sua Pan, Botswana. The TLS measures both elevation and relative surface moisture change simultaneously, without disturbing the surface. Measurement sequences enable the variability in aeolian sediment availability to be quantified along with temporal feedbacks associated with crust degradation. On crusts with well-developed polygon ridges (high aerodynamic and surface roughness), daily surface expansion was greater than 30mm. The greatest surface change occurred overnight on the upper, exposed sections of the ridges, particularly when surface temperatures dropping below 10°C. These areas also experienced the greatest moisture variation and became increasingly moist overnight in response to an increase in relative humidity. In contrast, during daylight hours, the ridge areas were drier than the lower lying inter-ridge areas. Positive feedbacks between surface topography and moisture reinforced the maximum diurnal moisture variation at ridge peaks, encouraging crust thrusting due to overnight salt hydration, further enhancing the surface, and therefore, aerodynamic roughness. These feedbacks

  16. High resolution computed tomography of advanced composite and ceramic materials

    NASA Technical Reports Server (NTRS)

    Yancey, R. N.; Klima, S. J.

    1991-01-01

    Advanced composite and ceramic materials are being developed for use in many new defense and commercial applications. In order to achieve the desired mechanical properties of these materials, the structural elements must be carefully analyzed and engineered. A study was conducted to evaluate the use of high resolution computed tomography (CT) as a macrostructural analysis tool for advanced composite and ceramic materials. Several samples were scanned using a laboratory high resolution CT scanner. Samples were also destructively analyzed at the locations of the scans and the nondestructive and destructive results were compared. The study provides useful information outlining the strengths and limitations of this technique and the prospects for further research in this area.

  17. Quantitative analysis of CT scans of ceramic candle filters

    SciTech Connect

    Ferer, M.V.; Smith, D.H.

    1996-12-31

    Candle filters are being developed to remove coal ash and other fine particles (<15{mu}m) from hot (ca. 1000 K) gas streams. In the present work, a color scanner was used to digitize hard-copy CT X-ray images of cylindrical SiC filters, and linear regressions converted the scanned (color) data to a filter density for each pixel. These data, with the aid of the density of SiC, gave a filter porosity for each pixel. Radial averages, density-density correlation functions, and other statistical analyses were performed on the density data. The CT images also detected the presence and depth of cracks that developed during usage of the filters. The quantitative data promise to be a very useful addition to the color images.

  18. Semi-automatic classification of textures in thoracic CT scans.

    PubMed

    Kockelkorn, Thessa T J P; de Jong, Pim A; Schaefer-Prokop, Cornelia M; Wittenberg, Rianne; Tiehuis, Audrey M; Gietema, Hester A; Grutters, Jan C; Viergever, Max A; van Ginneken, Bram

    2016-08-21

    The textural patterns in the lung parenchyma, as visible on computed tomography (CT) scans, are essential to make a correct diagnosis in interstitial lung disease. We developed one automatic and two interactive protocols for classification of normal and seven types of abnormal lung textures. Lungs were segmented and subdivided into volumes of interest (VOIs) with homogeneous texture using a clustering approach. In the automatic protocol, VOIs were classified automatically by an extra-trees classifier that was trained using annotations of VOIs from other CT scans. In the interactive protocols, an observer iteratively trained an extra-trees classifier to distinguish the different textures, by correcting mistakes the classifier makes in a slice-by-slice manner. The difference between the two interactive methods was whether or not training data from previously annotated scans was used in classification of the first slice. The protocols were compared in terms of the percentages of VOIs that observers needed to relabel. Validation experiments were carried out using software that simulated observer behavior. In the automatic classification protocol, observers needed to relabel on average 58% of the VOIs. During interactive annotation without the use of previous training data, the average percentage of relabeled VOIs decreased from 64% for the first slice to 13% for the second half of the scan. Overall, 21% of the VOIs were relabeled. When previous training data was available, the average overall percentage of VOIs requiring relabeling was 20%, decreasing from 56% in the first slice to 13% in the second half of the scan. PMID:27436568

  19. Comprehensive Non-Destructive Conservation Documentation of Lunar Samples Using High-Resolution Image-Based 3D Reconstructions and X-Ray CT Data

    NASA Technical Reports Server (NTRS)

    Blumenfeld, E. H.; Evans, C. A.; Oshel, E. R.; Liddle, D. A.; Beaulieu, K.; Zeigler, R. A.; Hanna, R. D.; Ketcham, R. A.

    2015-01-01

    Established contemporary conservation methods within the fields of Natural and Cultural Heritage encourage an interdisciplinary approach to preservation of heritage material (both tangible and intangible) that holds "Outstanding Universal Value" for our global community. NASA's lunar samples were acquired from the moon for the primary purpose of intensive scientific investigation. These samples, however, also invoke cultural significance, as evidenced by the millions of people per year that visit lunar displays in museums and heritage centers around the world. Being both scientifically and culturally significant, the lunar samples require a unique conservation approach. Government mandate dictates that NASA's Astromaterials Acquisition and Curation Office develop and maintain protocols for "documentation, preservation, preparation and distribution of samples for research, education and public outreach" for both current and future collections of astromaterials. Documentation, considered the first stage within the conservation methodology, has evolved many new techniques since curation protocols for the lunar samples were first implemented, and the development of new documentation strategies for current and future astromaterials is beneficial to keeping curation protocols up to date. We have developed and tested a comprehensive non-destructive documentation technique using high-resolution image-based 3D reconstruction and X-ray CT (XCT) data in order to create interactive 3D models of lunar samples that would ultimately be served to both researchers and the public. These data enhance preliminary scientific investigations including targeted sample requests, and also provide a new visual platform for the public to experience and interact with the lunar samples. We intend to serve these data as they are acquired on NASA's Astromaterials Acquisistion and Curation website at http://curator.jsc.nasa.gov/. Providing 3D interior and exterior documentation of astromaterial

  20. Unconventional Specimen Preparation Techniques Using High Resolution Low Voltage Field Emission Scanning Electron Microscopy to Study Cell Motility, Host Cell Invasion, and Internal Cell Structures in Toxoplasma gondii

    NASA Astrophysics Data System (ADS)

    Schatten, Heide; Ris, Hans

    2002-04-01

    Apicomplexan parasites employ complex and unconventional mechanisms for cell locomotion, host cell invasion, and cell division that are only poorly understood. While immunofluorescence and conventional transmission electron microscopy have been used to answer questions about the localization of some cytoskeletal proteins and cell organelles, many questions remain unanswered, partly because new methods are needed to study the complex interactions of cytoskeletal proteins and organelles that play a role in cell locomotion, host cell invasion, and cell division. The choice of fixation and preparation methods has proven critical for the analysis of cytoskeletal proteins because of the rapid turnover of actin filaments and the dense spatial organization of the cytoskeleton and its association with the complex membrane system. Here we introduce new methods to study structural aspects of cytoskeletal motility, host cell invasion, and cell division of Toxoplasma gondii, a most suitable laboratory model that is representative of apicomplexan parasites. The novel approach in our experiments is the use of high resolution low voltage field emission scanning electron microscopy (LVFESEM) combined with two new specimen preparation techniques. The first method uses LVFESEM after membrane extraction and stabilization of the cytoskeleton. This method allows viewing of actin filaments which had not been possible with any other method available so far. The second approach of imaging the parasite's ultrastructure and interactions with host cells uses semithick sections (200 nm) that are resin de-embedded (Ris and Malecki, 1993) and imaged with LVFESEM. This method allows analysis of structural detail in the parasite before and after host cell invasion and interactions with the membrane of the parasitophorous vacuole as well as parasite cell division.

  1. Tropospheric Carbon Monoxide Measurements from the Scanning High-resolution Interferometer Sounder on 7 September 2000 in Southern Africa during SAFARI 2000

    NASA Technical Reports Server (NTRS)

    McMillan, W. W.; McCourt, M. L.; Revercomb, H. E.; Knuteson, R. O.; Christian, T. J.; Doddridge, B. G.; Hobbs, P. V.; Lukovich, P. C.; Novelli, P. C.; Piketh, S. J.

    2003-01-01

    Retrieved tropospheric carbon monoxide (CO) column densities are presented for more than 9000 spectra obtained by the University of Wisconsin-Madison (UWis) Scanning High-Resolution Interferometer Sounder (SHIS) during a flight on the NASA ER-2 on 7 September 2000 as part of the Southern African Regional Science Initiative (SAFARI 2000) dry season field campaign. Enhancements in tropospheric column CO were detected in the vicinity of a controlled biomass burn in the Timbavati Game Reserve in northeastern South Africa and over the edge of the river of smoke in south central Mozambique. Relatively clean air was observed over the far southern coast of Mozambique. Quantitative comparisons are presented with in situ measurements from five different instruments flying on two other aircraft: the University of Washington Convair-580 (CV) and the South African Aerocommander JRB in the vicinity of the Timbavati fire. Measured tropospheric CO columns (extrapolated from 337 to 100 mb) of 2.1 x 10(exp 18) per square centimeter in background air and up to 1.5 x 10(exp 19) per square centimeter in the smoke plume agree well with SHIS retrieved tropospheric CO columns of (2.3 plus or minus 0.25) x 10(exp 18) per square centimeter over background air near the fire and (1.5 plus or minus 0.35) x 10(exp 19) per square centimeter over the smoke plume. Qualitative comparisons are presented with three other in situ CO profiles obtained by the South African JRA aircraft over Mozambique and northern South Africa showing the influence of the river of smoke.

  2. High-resolution scanning electron-microscopic studies on the three-dimensional structure of mitochondria and sarcoplasmic reticulum in the different twitch muscle fibers of the frog.

    PubMed

    Ogata, T; Yamasaki, Y

    1987-12-01

    The three-dimensional structure of the mitochondria and sarcoplasmic reticulum (SR) in the three types of twitch fibers, i.e., the red, white and intermediate skeletal muscle fibers, of the vastus lateralis muscle of the Japanese meadow frog (Rana nigromaculata nigromaculata Hallowell) was examined by high resolution scanning electron microscopy, after removal of the cytoplasmic matrices. The small red fibers have numerous mitochondrial columns of large diameter, while the large white fibers have a small number of mitochondrial columns of small diameter. In the medium-size intermediate fibers, the number and diameter of the mitochondrial columns are intermediate between those of the red and white fibers. In all three types of fibers, the terminal cisternae and transverse tubules form triads at the level of each Z-line. The thick terminal cisternae continue into much thinner flat intermediate cisternae, through a transitional part where a row of tiny indentations can be observed. Numerous slender longitudinal tubules originating from the intermediate cisternae, extend longitudinally or obliquely and form elongated oval networks of various sizes in front of the A-band, then fuse to form the H-band collar (fenestrated collar) around the myofibrils. On the surface of the H-band collar, small fenestrations as well as tiny hollows are seen. The three-dimensional structure of SR is basically the same in all three muscle fiber-types. However, the SR is sparse on the surface of mitochondria, so the mitochondria-rich red fiber has a smaller total volume of SR than the mitochondria-poor white fiber. The volume of SR of the intermediate fiber is intermediate between other the two. PMID:3690630

  3. Estimation of vertical plant area density profiles in a rice canopy at different growth stages by high-resolution portable scanning lidar with a lightweight mirror

    NASA Astrophysics Data System (ADS)

    Hosoi, Fumiki; Omasa, Kenji

    2012-11-01

    We used a high-resolution portable scanning lidar together with a lightweight mirror and a voxel-based canopy profiling method to estimate the vertical plant area density (PAD) profile of a rice (Oryza sativa L. cv. Koshihikari) canopy at different growth stages. To improve the laser's penetration of the dense canopy, we used a mirror to change the direction of the laser beam from horizontal to vertical (0°) and off-vertical (30°). The estimates of PAD and plant area index (PAI) were more accurate at 30° than at 0°. The root-mean-square errors of PAD at each growth stage ranged from 1.04 to 3.33 m2 m-3 at 0° and from 0.42 to 2.36 m2 m-3 at 30°, and those across all growth stages averaged 1.79 m2 m-3 at 0° and 1.52 m2 m-3 at 30°. The absolute percent errors of PAI at each growth stage ranged from 1.8% to 66.1% at 0° and from 4.3% to 23.2% at 30°, and those across all growth stages averaged 30.4% at 0° and 14.8% at 30°. The degree of laser beam coverage of the canopy (expressed as index Ω) explained these errors. From the estimates of PAD at 30°, regressions between the areas of stems, leaves, and ears per unit ground area and actual dry weights gave standard errors of 7.9 g m-2 for ears and 12.2 g m-2 for stems and leaves.

  4. Characterization of Soft Contact Lens Edge Fitting Using Ultra-High Resolution and Ultra-Long Scan Depth Optical Coherence Tomography

    PubMed Central

    Shen, Meixiao; Cui, Lele; Riley, Colleen; Wang, Michael R.

    2011-01-01

    Purpose. To characterize the edge fitting of soft contact lenses using ultra-high resolution optical coherence tomography (UHR-OCT) and ultra-long scan depth optical coherence tomography (UL-OCT). Methods. A total of 20 participants (11 men, 9 women; mean age, 32.3 years) were recruited. Four different types of soft contact lenses were randomly fitted to both eyes of each subject on two separate visits. After 30 minutes, the horizontal meridians of the corneal center, midperiphery, and limbus were imaged by UHR-OCT. UL-OCT imaged each lens in vitro and the ocular surface of a physical model eye. Results. Angle-edged lenses had significantly less conjunctival buildup than did round-edged lenses (P = 0.008). Limbal post-lens tear film gaps were present in 42% of the eyes, with the round-edged lenses having the most at 68%. Similarly, post-lens tear film gaps at the corneal mid-periphery were present in 47% of all eyes, with the round-edged lens having the most at 75%. Mismatches between the lens and the ocular surface were simulated based on UL-OCT images of the in vitro lenses and the model eye. The existence of tear film gaps and touching points were predicted in the simulation. Conclusions. The soft contact lens edge fitting was characterized by the conjunctival buildup and tear film gaps. Different types of contact lenses presented different levels of conjunctival buildup as well as different frequencies of tear film gaps. The findings by UHR-OCT were predicted in the simulation by UL-OCT. The application of these new technologies may open new ways of designing lenses and evaluating their fit. PMID:21372023

  5. Automated segmentation of mesothelioma volume on CT scan

    NASA Astrophysics Data System (ADS)

    Zhao, Binsheng; Schwartz, Lawrence; Flores, Raja; Liu, Fan; Kijewski, Peter; Krug, Lee; Rusch, Valerie

    2005-04-01

    In mesothelioma, response is usually assessed by computed tomography (CT). In current clinical practice the Response Evaluation Criteria in Solid Tumors (RECIST) or WHO, i.e., the uni-dimensional or the bi-dimensional measurements, is applied to the assessment of therapy response. However, the shape of the mesothelioma volume is very irregular and its longest dimension is almost never in the axial plane. Furthermore, the sections and the sites where radiologists measure the tumor are rather subjective, resulting in poor reproducibility of tumor size measurements. We are developing an objective three-dimensional (3D) computer algorithm to automatically identify and quantify tumor volumes that are associated with malignant pleural mesothelioma to assess therapy response. The algorithm first extracts the lung pleural surface from the volumetric CT images by interpolating the chest ribs over a number of adjacent slices and then forming a volume that includes the thorax. This volume allows a separation of mesothelioma from the chest wall. Subsequently, the structures inside the extracted pleural lung surface, including the mediastinal area, lung parenchyma, and pleural mesothelioma, can be identified using a multiple thresholding technique and morphological operations. Preliminary results have shown the potential of utilizing this algorithm to automatically detect and quantify tumor volumes on CT scans and thus to assess therapy response for malignant pleural mesothelioma.

  6. Acquiring 4D Thoracic CT Scans Using Ciné CT Acquisition

    NASA Astrophysics Data System (ADS)

    Low, Daniel

    One method for acquiring 4D thoracic CT scans is to use ciné acquisition. Ciné acquisition is conducted by rotating the gantry and acquiring x-ray projections while keeping the couch stationary. After a complete rotation, a single set of CT slices, the number corresponding to the number of CT detector rows, is produced. The rotation period is typically sub second so each image set corresponds to a single point in time. The ciné image acquisition is repeated for at least one breathing cycle to acquire images throughout the breathing cycle. Once the images are acquired at a single couch position, the couch is moved to the abutting position and the acquisition is repeated. Post-processing of the images sets typically resorts the sets into breathing phases, stacking images from a specific phase to produce a thoracic CT scan at that phase. Benefits of the ciné acquisition protocol include, the ability to precisely identify the phase with respect to the acquired image, the ability to resort images after reconstruction, and the ability to acquire images over arbitrarily long times and for arbitrarily many images (within dose constraints).

  7. Multi-detector row CT scanning in Paleoanthropology at various tube current settings and scanning mode.

    PubMed

    Badawi-Fayad, J; Yazbeck, C; Balzeau, A; Nguyen, T H; Istoc, A; Grimaud-Hervé, D; Cabanis, E- A

    2005-12-01

    The purpose of this study was to determine the optimal tube current setting and scanning mode for hominid fossil skull scanning, using multi-detector row computed tomography (CT). Four fossil skulls (La Ferrassie 1, Abri Pataud 1, CroMagnon 2 and Cro-Magnon 3) were examined by using the CT scanner LightSpeed 16 (General Electric Medical Systems) with varying dose per section (160, 250, and 300 mAs) and scanning mode (helical and conventional). Image quality of two-dimensional (2D) multiplanar reconstructions, three-dimensional (3D) reconstructions and native images was assessed by four reviewers using a four-point grading scale. An ANOVA (analysis of variance) model was used to compare the mean score for each sequence and the overall mean score according to the levels of the scanning parameters. Compared with helical CT (mean score=12.03), the conventional technique showed sustained poor image quality (mean score=4.17). With the helical mode, we observed a better image quality at 300 mAs than at 160 in the 3D sequences (P=0.03). Whereas in native images, a reduction in the effective tube current induced no degradation in image quality (P=0.05). Our study suggests a standardized protocol for fossil scanning with a 16 x 0.625 detector configuration, a 10 mm beam collimation, a 0.562:1 acquisition mode, a 0.625/0.4 mm slice thickness/reconstruction interval, a pitch of 5.62, 120 kV and 300 mAs especially when a 3D study is required. PMID:16211320

  8. CT Scans of Soil Specimen Processed in Space

    NASA Technical Reports Server (NTRS)

    1998-01-01

    CT scans of the spcimens on STS-79 reveal internal cone-shaped features and radial patterns not seen in specimens processed on the ground. The lighter areas are the densest in these images. CT scans produced richly detailed images allowing scientists to build 3D models of the interior of the specimens that can be compared with microscopic examination of thin slices. This view is made from a series of horizontal slices. Sand and soil grains have faces that can cause friction as they roll and slide against each other, or even cause sticking and form small voids between grains. This complex behavior can cause soil to behave like a liquid under certain conditions such as earthquakes or when powders are handled in industrial processes. Mechanics of Granular Materials (MGM) experiments aboard the Space Shuttle use the microgravity of space to simulate this behavior under conditions that carnot be achieved in laboratory tests on Earth. MGM is shedding light on the behavior of fine-grain materials under low effective stresses. Applications include earthquake engineering, granular flow technologies (such as powder feed systems for pharmaceuticals and fertilizers), and terrestrial and planetary geology. Nine MGM specimens have flown on two Space Shuttle flights. Another three are scheduled to fly on STS-107. The principal investigator is Stein Sture of the University of Colorado at Boulder. Credit: Los Alamos National Laboratory and the University of Colorado at Boulder.

  9. CT Scans of Soil Specimen Processed in Space

    NASA Technical Reports Server (NTRS)

    1998-01-01

    CT scans of the spcimens on STS-79 reveal internal cone-shaped features and radial patterns not seen in specimens processed on the ground. The lighter areas are the densest in these images. CT scans produced richly detailed images allowing scientists to build 3D models of the interior of the specimens that can be compared with microscopic examination of thin slices. These views depict vertical slices from side to middle of a flight specimen. Sand and soil grains have faces that can cause friction as they roll and slide against each other, or even cause sticking and form small voids between grains. This complex behavior can cause soil to behave like a liquid under certain conditions such as earthquakes or when powders are handled in industrial processes. Mechanics of Granular Materials (MGM) experiments aboard the Space Shuttle use the microgravity of space to simulate this behavior under conditions that carnot be achieved in laboratory tests on Earth. MGM is shedding light on the behavior of fine-grain materials under low effective stresses. Applications include earthquake engineering, granular flow technologies (such as powder feed systems for pharmaceuticals and fertilizers), and terrestrial and planetary geology. Nine MGM specimens have flown on two Space Shuttle flights. Another three are scheduled to fly on STS-107. The principal investigator is Stein Sture of the University of Colorado at Boulder. Credit: Los Alamos National Laboratory and the University of Colorado at Boulder.

  10. CT Scans of Soil Specimen Processed in Space

    NASA Technical Reports Server (NTRS)

    1998-01-01

    CT scans of the specimens on STS-79 reveal internal cone-shaped features and radial patterns not seen in specimens processed on the ground. The lighter areas are the densest in these images. CT scans produced richly detailed images allowing scientists to build 3D models of the interior of the specimens that can be compared with microscopic examination of thin slices. This view is made from three orthogonal slices. Sand and soil grains have faces that can cause friction as they roll and slide against each other, or even cause sticking and form small voids between grains. This complex behavior can cause soil to behave like a liquid under certain conditions such as earthquakes or when powders are handled in industrial processes. Mechanics of Granular Materials (MGM) experiments aboard the Space Shuttle use the microgravity of space to simulate this behavior under conditions that carnot be achieved in laboratory tests on Earth. MGM is shedding light on the behavior of fine-grain materials under low effective stresses. Applications include earthquake engineering, granular flow technologies (such as powder feed systems for pharmaceuticals and fertilizers), and terrestrial and planetary geology. Nine MGM specimens have flown on two Space Shuttle flights. Another three are scheduled to fly on STS-107. The principal investigator is Stein Sture of the University of Colorado at Boulder. (Credit: Los Alamos National Laboratory and the University of Colorado at Boulder).

  11. CT Scans of Soil Specimen Processed in Space

    NASA Technical Reports Server (NTRS)

    1998-01-01

    CT scans of the spcimens on STS-79 reveal internal cone-shaped features and radial patterns not seen in specimens processed on the ground. The lighter areas are the densest in these images. CT scans produced richly detailed images allowing scientists to build 3D models of the interior of the specimens that can be compared with microscopic examination of thin slices. This view depict horizontal slices from top to bottom of a flight specimen. Sand and soil grains have faces that can cause friction as they roll and slide against each other, or even cause sticking and form small voids between grains. This complex behavior can cause soil to behave like a liquid under certain conditions such as earthquakes or when powders are handled in industrial processes. Mechanics of Granular Materials (MGM) experiments aboard the Space Shuttle use the microgravity of space to simulate this behavior under conditions that carnot be achieved in laboratory tests on Earth. MGM is shedding light on the behavior of fine-grain materials under low effective stresses. Applications include earthquake engineering, granular flow technologies (such as powder feed systems for pharmaceuticals and fertilizers), and terrestrial and planetary geology. Nine MGM specimens have flown on two Space Shuttle flights. Another three are scheduled to fly on STS-107. The principal investigator is Stein Sture of the University of Colorado at Boulder. Credit: Los Alamos National Laboratory and the University of Colorado at Boulder.

  12. Lipiodol enhanced CT scanning of malignant hepatic tumors.

    PubMed

    Eurvilaichit, C

    2000-04-01

    From August 1984 to March 1991, 41 patients with malignant liver tumors, 30 males and 11 females, aged 30-75 years were treated at Ramathibodi Hospital with injection of mitomycin-C lipiodol emulsion into the tumor via the feeding artery followed by embolization of the feeding artery with gelfoam particles. The patients comprised 30 cases of hepatocellular carcinoma, 4 cases of cholangiocarcinoma and 7 cases of metastatic tumors of which one was from CA stomach, three were from CA breast, and three from CA colon. The vascularity of the tumor was assessed in angiogram obtained prior to treatment and retention pattern of lipiodol in the tumor was evaluated in lipiodol-enhanced CT scan images taken 2-4 weeks following therapy. The results showed that lipiodol CT scan images exhibited four patterns of lipiodol retention in the tumor appearing as opacity as follows (1) homogenous (2) heterogeneous (3) ring-like and (4) none. Lipiodol retention pattern appeared to be somewhat related to vascularity of the tumor. Most of the hypervascular tumors such as hepatocellular carcinoma had homogeneous lipiodol accumulation pattern if the tumor size was less than 5 cm. Metastatic tumors and cholangiocarcinoma showed heterogeneous or ring-like pattern of lipiodol accumulation because they were relatively hypovascular. Hypervascular hepatocellular carcinoma may exhibit heterogeneous or ring-like pattern if they are larger than 5 cms, and have multiple feeding arteries, necrosis or AV shunting. Hepatocellular carcinoma with AV shunting may not show any lipiodol accumulation at all. PMID:10808700

  13. Use of high resolution Airborne Laser Scanning data for landslide interpretation under mixed forest and tropical rainforest: case study in Barcelonnette, France and Cameron Highlands, Malaysia

    NASA Astrophysics Data System (ADS)

    Azahari Razak, Khamarrul; Straatsma, Menno; van Westen, Cees; Malet, Jean-Philippe; de Jong, Steven M.

    2010-05-01

    Airborne Laser Scanning (ALS) is the state of the art technology for topographic mapping over a wide variety of spatial and temporal scales. It is also a promising technique for identification and mapping of landslides in a forested mountainous landscape. This technology demonstrates the ability to pass through the gaps between forest foliage and record the terrain height under vegetation cover. To date, most of the images either derived from satellite imagery, aerial-photograph or synthetic aperture radar are not appropriate for visual interpretation of landslide features that are covered by dense vegetation. However, it is a necessity to carefully map the landslides in order to understand its processes. This is essential for landslide hazard and risk assessment. This research demonstrates the capabilities of high resolution ALS data to recognize and identify different types of landslides in mixed forest in Barcelonnette, France and tropical rainforest in Cameron Highlands, Malaysia. ALS measurements over the 100-years old forest in Bois Noir catchment were carried out in 2007 and 2009. Both ALS dataset were captured using a Riegl laser scanner. First and last pulse with density of one point per meter square was derived from 2007 ALS dataset, whereas multiple return (of up to five returns) pulse was derived from July 2009 ALS dataset, which consists of 60 points per meter square over forested terrain. Generally, this catchment is highly affected by shallow landslides which mostly occur beneath dense vegetation. It is located in the dry intra-Alpine zone and represented by the climatic of the South French Alps. In the Cameron Highlands, first and last pulse data was captured in 2004 which covers an area of up to 300 kilometres square. Here, the Optech laser scanner was used under the Malaysian national pilot study which has slightly low point density. With precipitation intensity of up to 3000 mm per year over rugged topography and elevations up to 2800 m a

  14. SU-E-I-37: Eye Lens Dose Reduction From CT Scan Using Organ Based Tube Current Modulation

    SciTech Connect

    Liu, H; Liu, T; Xu, X; Wu, J; Zhuo, W

    2015-06-15

    Purpose: To investigate the eye lens dose reduction by CT scan with organ based tube current modulation (OBTCM) using GPU Monte Carlo code ARCHER-CT. Methods: 36 X-ray sources and bowtie filters were placed around the patient head with the projection angle interval of 10° for one rotation of CT scan, each projection was simulated respectively. The voxel eye models with high resolution(0.1mm*0.1mm*0.1mm) were used in the simulation and different tube voltage including 80kVp, 100kVp, 120kVp and 140kVp were taken into consideration. Results: The radiation doses to the eye lens increased with the tube voltage raised from 80kVp to 140kVp, and the dose results from 0° (AP) direction are much higher than those from 180° (PA) direction for all the 4 different tube voltage investigated. This 360° projection dose characteristic enables organ based TCM, which can reduce the eye lens dose by more than 55%. Conclusion: As the eye lens belongs to superficial tissues, its radiation dose to external exposure like CT is direction sensitive, and this characteristic feature makes organ based TCM to be an effective way to reduce the eye lens dose, so more clinical use of this technique were recommended. National Nature Science Foundation of China(No.11475047)

  15. A study evaluating the dependence of the patient dose on the CT dose change in a SPECT/CT scan

    NASA Astrophysics Data System (ADS)

    Kim, Woo-Hyun; Kim, Ho-Sung; Dong, Kyung-Rae; Chung, Woon-Kwan; Cho, Jae-Hwan; Shin, Jae-Woo

    2012-07-01

    This study assessed ways of reducing the patient dose by examining the dependence of the patient dose on the CT (computed tomography) dose in a SPECT (single-photon emission computed tomography)/CT scan. To measure the patient dose, we used Precedence 16 SPECT/CT along with a phantom for the CT dose measurement (CT dose phantom kit for adult's head and body, Model 76-414-4150), a 100-mm ionization chamber (CT Ion Chamber) and an X-ray detector (Victoreen Model 4000M+). In addition, the patient dose was evaluated under conditions similar to those for an actual examination using an ImPACT (imaging performance assessment of CT scanners) dosimetry calculator in the Monte Carlo simulation method. The experimental method involved the use of a CT dose phantom to measure the patient dose under different CT conditions (kVp and mAs) to determine the CTDI (CT dose index) under each condition. An ImPACT dosimetry calculator was also used to measure CTDIw (CT dose index water ), CTDIv (CT dose index volume ), DLP (dose-length product), and effective dose. According to the patient dose measurements using the CT dose phantom, the CTDI showed an approximately 54 fold difference between when the maximum (140 kVp and 250 mAs) and the minimum dose (90 kVp and 25 mAs) was used. The CTDI showed a 4.2 fold difference between the conditions (120 kVp and 200 mAs) used mainly in a common CT scan and the conditions (120 kVp and 50 mAs) used mainly in a SPECT/CT scan. According to the measurement results using the dosimetry calculator, the effective dose showed an approximately 35 fold difference between the conditions for the maximum and the minimum doses, as in the case with the CT dose phantom. The effective dose showed a 4.1 fold difference between the conditions used mainly in a common CT scan and those used mainly in a SPECT/CT scan. This study examined the patient dose by reducing the CT dose in a SPECT/CT scan. As various examinations can be conducted due to the development of

  16. Fluid mud dynamics in the Weser estuary turbidity zone tracked by high-resolution side-scan sonar and parametric sub-bottom profiler

    NASA Astrophysics Data System (ADS)

    Schrottke, Kerstin; Becker, Marius; Bartholomä, Alexander; Flemming, Burghard W.; Hebbeln, Dierk

    2006-09-01

    Fluid mud in estuarine turbidity maximum zones (TMZ) can pose considerable navigation risks due to potentially substantial reductions in nautical depth, coupled with an inherent difficulty of detection by conventional echo-sounders. Despite intensive research efforts, however, our knowledge about the spatial and temporal dynamics of fluid mud is still not sufficient. In this study, the combined use of a side-scan sonar (Sportscan®, Imagenex) and a parametric sub-bottom profiler (SES-2000®, Innomar Technology GmbH) has proved successful for high-resolution fluid mud detection and volumetric quantification in an estuarine environment. In 2004 and 2005, repeated surveys were conducted in the navigation channel of the upper meso- to lower macrotidal Weser estuary TMZ (German North Sea coast) at different tidal stages and river discharges. Current velocity data were simultaneously collected by 1,200-kHz broadband ADCP (RDInstruments) measurements. Ground-truthing was carried out by means of grab sampling and gravity coring, adapted to fluid mud conditions. It was found that fluid mud occurrence in the Weser estuary is highly variable on time scales of a few hours and spatial scales of several metres. The riverbed is characterised by sand and mud deposits, and a complex morphology including subaqueous dunes and smooth bed deposits intermittently overlain by fluid mud. Thus, a continuous, coherent fluid mud body covering the entire TMZ riverbed was not observed. Rather, spatial distribution was patchy and highly dependent on suspended particulate matter (SPM) concentrations in the water column, as a result of which local fluid mud deposits varied in thickness from centimetres to metres. The formation of fluid mud was largely restricted to slack water, although slack-water conditions were not necessarily associated with large-scale fluid mud appearance. Advective SPM transport of resuspended fluid mud seems to be the most plausible explanation for the high spatial

  17. To Scan or not to Scan: Consideration of Medical Benefit in the Justification of CT Scanning.

    PubMed

    McCollough, Cynthia H

    2016-03-01

    While there are ongoing debates with regard to the level of risk, if any, associated with medical imaging, the benefits from medical imaging exams are well documented. This forum article looks at outcome-based medical studies and guidance from expert panels in an effort to bring the benefits of medical imaging, specifically CT imaging, into focus. The position is taken that imaging, medical, and safety communities must not continue to discuss small hypothetical risks from ionizing radiation without emphasizing the large well-documented benefits from medical imaging exams that use ionizing radiation. PMID:26808885

  18. Orthogonal-rotating tetrahedral scanning for cone-beam CT

    NASA Astrophysics Data System (ADS)

    Ye, Ivan B.; Wang, Ge

    2012-10-01

    In this article, a cone-beam CT scanning mode is designed assuming four x-ray sources and a spherical sample. The x-ray sources are mounted at the vertices of a regular tetrahedron. On the circumsphere of the tetrahedron, four detection panels are mounted opposite to each vertex. To avoid x-ray interference, the largest half angle of each x-ray cone beam is 27°22', while the radius of the largest ball fully covered by all the cone beams is 0.460, when the radius of the circumsphere is 1. Several scanning schemes are proposed which consist of two rotations about orthogonal axes, such that each quarter turn provides sufficient data for theoretically exact and stable reconstruction. This design can be used in biomedical or industrial settings, such as when a sequence of reconstructions of an object is desired. Similar scanning schemes based on other regular or irregular polyhedra and various rotation speeds are also discussed.

  19. Possibilities of CT Scanning as Analysis Method in Laser Additive Manufacturing

    NASA Astrophysics Data System (ADS)

    Karme, Aleksis; Kallonen, Aki; Matilainen, Ville-Pekka; Piili, Heidi; Salminen, Antti

    Laser additive manufacturing is an established and constantly developing technique. Structural assessment should be a key component to ensure directed evolution towards higher level of manufacturing. The macroscopic properties of metallic structures are determined by their internal microscopic features, which are difficult to assess using conventional surface measuring methodologies. X-ray microtomography (CT) is a promising technique for three-dimensional non-destructive probing of internal composition and build of various materials. Aim of this study is to define the possibilities of using CT scanning as quality control method in LAM fabricated parts. Since the parts fabricated with LAM are very often used in high quality and accuracy demanding applications in various industries such as medical and aerospace, it is important to be able to define the accuracy of the build parts. The tubular stainless steel test specimens were 3D modelled, manufactured with a modified research AM equipment and imaged after manufacturing with a high-power, high-resolution CT scanner. 3D properties, such as surface texture and the amount and distribution of internal pores, were also evaluated in this study. Surface roughness was higher on the interior wall of the tube, and deviation from the model was systematically directed towards the central axis. Pore distribution showed clear organization and divided into two populations; one following the polygon model seams along both rims, and the other being associated with the concentric and equidistant movement path of the laser. Assessment of samples can enhance the fabrication by guiding the improvement of both modelling and manufacturing process.

  20. TU-A-12A-12: Improved Airway Measurement Accuracy for Low Dose Quantitative CT (qCT) Using Statistical (ASIR), at Reduced DFOV, and High Resolution Kernels in a Phantom and Swine Model

    SciTech Connect

    Yadava, G; Imai, Y; Hsieh, J

    2014-06-15

    Purpose: Quantitative accuracy of Iodine Hounsfield Unit (HU) in conventional single-kVp scanning is susceptible to beam-hardening effect. Dual-energy CT has unique capabilities of quantification using monochromatic CT images, but this scanning mode requires the availability of the state-of-the-art CT scanner and, therefore, is limited in routine clinical practice. Purpose of this work was to develop a beam-hardening-correction (BHC) for single-kVp CT that can linearize Iodine projections at any nominal energy, apply this approach to study Iodine response with respect to keV, and compare with dual-energy based monochromatic images obtained from material-decomposition using 80kVp and 140kVp. Methods: Tissue characterization phantoms (Gammex Inc.), containing solid-Iodine inserts of different concentrations, were scanned using GE multi-slice CT scanner at 80, 100, 120, and 140 kVp. A model-based BHC algorithm was developed where Iodine was estimated using re-projection of image volume and corrected through an iterative process. In the correction, the re-projected Iodine was linearized using a polynomial mapping between monochromatic path-lengths at various nominal energies (40 to 140 keV) and physically modeled polychromatic path-lengths. The beam-hardening-corrected 80kVp and 140kVp images (linearized approximately at effective energy of the beam) were used for dual-energy material-decomposition in Water-Iodine basis-pair followed by generation of monochromatic images. Characterization of Iodine HU and noise in the images obtained from singlekVp with BHC at various nominal keV, and corresponding dual-energy monochromatic images, was carried out. Results: Iodine HU vs. keV response from single-kVp with BHC and dual-energy monochromatic images were found to be very similar, indicating that single-kVp data may be used to create material specific monochromatic equivalent using modelbased projection linearization. Conclusion: This approach may enable quantification of

  1. Effect of spineboard and headblocks on the image quality of head CT scans.

    PubMed

    Hemmes, Baukje; Jeukens, Cécile R L P N; Al-Haidari, Aliaa; Hofman, Paul A M; Vd Linden, Ed S; Brink, Peter R G; Poeze, Martijn

    2016-06-01

    Trauma patients at risk for, or suspected of, spinal injury are frequently transported to hospital using full spinal immobilisation. At the emergency department, immobilisation is often maintained until radiological work-up is completed. In this study, we examined how these devices for spinal stabilization influence visual image quality. Image quality was judged for both patient CT scans and phantom CT scans. CT scans of 217 patients were assessed retrospectively by two radiologists for visual scoring of image quality, scoring both quantity and impact of artifacts caused by the immobilization devices. For the phantom CT scans, eight set-ups were made, using a vacuum mattress without headblocks and a rigid and a soft-layered spineboard without headblocks, with standard soft-foam headblocks, or with new design headblocks. Overall, artifacts were found in 67 % of CT scans of patients on immobilization devices, which hampered diagnosis in 10 % of the cases. In the phantom CT scans, artifacts were present in all set-ups with one or more devices present and were seen in 20 % of all scan slices. The presence of headblocks resulted in more artifacts in both the patient CT scans and the phantom CT scans. Considerable effort should therefore be made to adjust the design of the immobilization devices and to remove the headblocks before CT scans are made. PMID:27091739

  2. 3D dosimetry by optical-CT scanning

    PubMed Central

    Oldham, Mark

    2007-01-01

    The need for an accurate, practical, low-cost 3D dosimetry system is becoming ever more critical as modern dose delivery techniques increase in complexity and sophistication. A recent report from the Radiological Physics Center (RPC) (1), revealed that 38% of institutions failed the head-and-neck IMRT phantom credentialing test at the first attempt. This was despite generous passing criteria (within 7% dose-difference or 4mm distance-to-agreement) evaluated at a half-dozen points and a single axial plane. The question that arises from this disturbing finding is – what percentage of institutions would have failed if a comprehensive 3D measurement had been feasible, rather than measurements restricted to the central film-plane and TLD points? This question can only be adequately answered by a comprehensive 3D-dosimetry system, which presents a compelling argument for its development as a clinically viable low cost dosimetry solution. Optical-CT dosimetry is perhaps the closest system to providing such a comprehensive solution. In this article, we review the origins and recent developments of optical-CT dosimetry systems. The principle focus is on first generation systems known to have highest accuracy but longer scan times. PMID:17460781

  3. Union of Scaphoid Waist Fractures Assessed by CT Scan

    PubMed Central

    Clementson, Martin; Jørgsholm, Peter; Besjakov, Jack; Björkman, Anders; Thomsen, Niels

    2015-01-01

    Background Union of a scaphoid fracture is difficult to assess on a standard series of radiographs. An unnecessary and prolonged immobilization is inconvenient and may impair functional outcome. Although operative treatment permits early mobilization, its influence on time to union is still uncertain. Purpose To assess union of scaphoid waist fractures based on computed tomography (CT) scan at 6 weeks, and to compare time to union between conservative treatment and arthroscopically assisted screw fixation. Patients and methods CT scan in the longitudinal axis of the scaphoid was used to provide fracture characteristics, and to assess bone union at 6 weeks in 65 consecutive patients with scaphoid waist fractures. In a randomized subgroup from this cohort with nondisplaced fractures, we compared time to union between conservative treatment (n = 23) and arthroscopically assisted screw fixation (n = 15). Results Overall, at 6 weeks we found a 90% union rate for non- or minimally displaced fracture treated conservatively, and 82% for those who underwent surgery. In the randomized subgroup of nondisplaced fractures, no significant difference in time to union was demonstrated between those treated conservatively and those who underwent surgery. The conservatively treated fractures from this subgroup with prolonged time to union (10 to 14 weeks) were comminuted, demonstrating a radial cortical or corticospongious fragment. Conclusion The majority of non- or minimally displaced scaphoid waist fractures are sufficiently treated with 6 weeks in a cast. Screw fixation does not reduce time to fracture union compared with conservative treatment. Level of Evidence level II, Therapeutic study PMID:25709879

  4. Slowing the increase in the population dose resulting from CT scans.

    PubMed

    Brenner, D J

    2010-12-01

    The annual number of CT scans in the U.S. is now over 70 million. The concern is that organ doses from CT are typically far larger than those from conventional X-ray examinations, and there is epidemiological evidence of a small but significant increased cancer risk at typical CT doses. Because CT is a superb diagnostic tool and because individual CT risks are small, when a CT scan is clinically indicated, the CT benefit/risk balance is by far in the patient's favor. Nevertheless, CT should operate under the ALARA (As Low As Reasonably Achievable) principle, and opportunities exist to reduce the significant population dose associated with CT without compromising patient care. The first opportunity is to reduce the dose per scan, and improved technology has much potential here. The second opportunity is selective replacement of CT with other modalities, such as for many head and spinal examinations (with MRI), and for diagnosing appendicitis (selective use of ultrasound + CT). Finally, a fraction of CT scans could be avoided entirely, as indicated by CT decision rules: Clinical decision rules for CT use represent a powerful approach for slowing down the increase in CT use, because they have the potential to overcome some of the major factors that result in some CT scans being undertaken when they are potentially not clinically helpful. In the U.S. and potentially elsewhere, legislative approaches are a possible option, to improve quality control and reduce clinically unneeded CT use, and it is also possible that upcoming changes in heath care economics will tend to slow the increase in such CT use. PMID:20731591

  5. Emphysema in silica- and asbestos-exposed workers seeking compensation. A CT scan study.

    PubMed

    Bégin, R; Filion, R; Ostiguy, G

    1995-09-01

    It has been established that coal pneumoconiosis and confluent silicosis are associated with emphysematous changes in the lungs. In the present study, we addressed the concept of emphysema in simple silicosis and asbestosis and in workers exposed to these minerals without the pneumoconiosis. The study was done on 207 consecutive workers evaluated for possible pneumoconiosis at Québec Workman Compensation Board, who had a radiographic reading of pneumoconiosis in the category 0 or 1 of the ILO scale, and in 5 control subjects. Emphysema was detected, typed, and graded on high-resolution CT scans by three independent experienced readers. Age, work experience and industry, smoking habits, and pulmonary function test results were analyzed for possible associations. The subjects were 59 +/- 1 years of age and had mineral dust exposure averaging 26 +/- 1 years; 31 were lifetime nonsmokers and the others were either ex- or current smokers. Ninety-six workers were from primary and 111 from secondary industries and did not differ in any parameter. The CT scan readings for emphysema yielded a 63% complete agreement. In lifetime non-smokers, emphysema was seen in 1 of 20 subjects without pneumoconiosis but in 8 of 11 patients with pneumoconioses. In smokers without pneumoconioses, emphysema was present in 55% of patients with silica exposure, but 29% of patients with asbestos exposure but comparable smoking (p = 0.04). Emphysema type was equally distributed among the groups except for more paracicatricial type in confluent silicosis. Regression analyses documented that age, smoking, exposure type, and presence of pneumoconiosis were significant contribution factors. In the workers without pneumoconiosis, age, smoking, and exposure type (silica) were significant. Emphysema related best with FEV1/FVC ratio, MMEF, and DCO reductions. The prevalence of abnormality of FEV1/FVC ratio was two to five times normal and that of reduced DCO two times normal. We conclude that, in our

  6. Performance tests for ray-scan 64 PET/CT based on NEMA NU-2 2007

    NASA Astrophysics Data System (ADS)

    Li, Suying; Zhou, Kun; Zhang, Qiushi; Zhang, Jinming; Yang, Kun; Xu, Baixuan; Ren, Qiushi

    2015-03-01

    This paper focuses on evaluating the performance of the Ray-Scan 64 PET/CT system, a newly developed PET/CT in China. It combines a 64 slice helical CT scanner with a high resolution PET scanner based on BGO crystals assembled in 36 rings. The energy window is 350~ 650 keV, and the coincidence window is set at 12 ns in both 2D and 3D mode. The transaxial field of view (FOV) is 600 mm in diameter, and the axial FOV is 163 mm. Method: Performance measurements were conducted focusing on PET scanners based on NEMA NU-2 2007 standard. We reported the full characterization (spatial resolution, sensitivity, count rate performance, scatter fraction, accuracy of correction, and image quality) in both 2D and 3D mode. In addition, the clinical images from two patients of different types of tumor were presented to further demonstrate this PET/CT system performance in clinical application. Results: using the NEMA NU-2 2007 standard, the main results: (1) the transaxial resolution at 1cm from the gantry center for 2D and 3D was both 4.5mm (FWHM), and at 10cm from the gantry center, the radial (tangential) resolution were 5.6mm (5.3mm) and 5.4mm (5.2mm) in 2D and 3D mode respectively. The axial resolution at 1cm and 10cm off axis was 3.4mm (4.8mm) and 5.5mm (5.8mm) in 2D (3D) mode respectively; (2) the sensitivity for the radial position R0(r=0mm) and R100(r=100mm) were 1.741 kcps/MBq and 1.767 kcps/MBq respectively in 2D mode and 7.157 kcps/MBq and 7.513 kcps/MBq in 3D mode; (3) the scatter fraction was calculated as 18.36% and 42.92% in 2D and 3D mode, respectively; (4) contrast of hot spheres in the image quality phantom in 2D mode was 50.33% (52.87%), 33.34% (40.86%), 20.64% (26.36%), and 10.99% (15.82%), respectively, in N=4 (N=8). Besides, in clinical study, the diameter of lymph tumor was about 2.4 cm, and the diameter of lung cancer was 4.2 cm. This PET/CT system can distinguish the position of cancer easily. Conclusion: The results show that the performance of the newly

  7. Childhood CT scans linked to leukemia and brain cancer later in life

    Cancer.gov

    Children and young adults scanned multiple times by computed tomography (CT), a commonly used diagnostic tool, have a small increased risk of leukemia and brain tumors in the decade following their first scan.

  8. Semi-automated fault system extraction and displacement analysis of an excavated oyster reef using high-resolution laser scanned data

    NASA Astrophysics Data System (ADS)

    Molnár, Gábor; Székely, Balázs; Harzhauser, Mathias; Djuricic, Ana; Mandic, Oleg; Dorninger, Peter; Nothegger, Clemens; Exner, Ulrike; Pfeifer, Norbert

    2015-04-01

    In this contribution we present a semi-automated method for reconstructing the brittle deformation field of an excavated Miocene oyster reef, in Stetten, Korneuburg Basin, Lower Austria. Oyster shells up to 80 cm in size were scattered in a shallow estuarine bay forming a continuous and almost isochronous layer as a consequence of a catastrophic event in the Miocene. This shell bed was preserved by burial of several hundred meters of sandy to silty sediments. Later the layers were tilted westward, uplifted and erosion almost exhumed them. An excavation revealed a 27 by 17 meters area of the oyster covered layer. During the tectonic processes the sediment volume suffered brittle deformation. Faults mostly with some centimeter normal component and NW-SE striking affected the oyster covered volume, dissecting many shells and the surrounding matrix as well. Faults and displacements due to them can be traced along the site typically at several meters long, and as fossil oysters are broken and parts are displaced due to the faulting, along some faults it is possible to follow these displacements in 3D. In order to quantify these varying displacements and to map the undulating fault traces high-resolution scanning of the excavated and cleaned surface of the oyster bed has been carried out using a terrestrial laser scanner. The resulting point clouds have been co-georeferenced at mm accuracy and a 1mm resolution 3D point cloud of the surface has been created. As the faults are well-represented in the point cloud, this enables us to measure the dislocations of the dissected shell parts along the fault lines. We used a semi-automatic method to quantify these dislocations. First we manually digitized the fault lines in 2D as an initial model. In the next step we estimated the vertical (i.e. perpendicular to the layer) component of the dislocation along these fault lines comparing the elevations on two sides of the faults with moving averaging windows. To estimate the strike

  9. High Resolution Laboratory Spectroscopy

    NASA Astrophysics Data System (ADS)

    Brünken, S.; Schlemmer, S.

    2016-05-01

    In this short review we will highlight some of the recent advancements in the field of high-resolution laboratory spectroscopy that meet the needs dictated by the advent of highly sensitive and broadband telescopes like ALMA and SOFIA. Among these is the development of broadband techniques for the study of complex organic molecules, like fast scanning conventional absorption spectroscopy based on multiplier chains, chirped pulse instrumentation, or the use of synchrotron facilities. Of similar importance is the extension of the accessible frequency range to THz frequencies, where many light hydrides have their ground state rotational transitions. Another key experimental challenge is the production of sufficiently high number densities of refractory and transient species in the laboratory, where discharges have proven to be efficient sources that can also be coupled to molecular jets. For ionic molecular species sensitive action spectroscopic schemes have recently been developed to overcome some of the limitations of conventional absorption spectroscopy. Throughout this review examples demonstrating the strong interplay between laboratory and observational studies will be given.

  10. Use of PET/CT scanning in cancer patients: technical and practical considerations

    PubMed Central

    2005-01-01

    This overview of the oncologic applications of positron emission tomography (PET) focuses on the technical aspects and clinical applications of a newer technique: the combination of a PET scanner and a computed tomography (CT) scanner in a single (PET/CT) device. Examples illustrate how PET/CT contributes to patient care and improves upon the previous state-of-the-art method of comparing a PET scan with a separate CT scan. Finally, the author presents some of the results from studies of PET/CT imaging that are beginning to appear in the literature. PMID:16252023

  11. Thoracic CT scanning for mediastinal Hodgkin's disease: results and therapeutic implications

    SciTech Connect

    Rostock, R.A.; Siegelman, S.S.; Lenhard, R.E.; Wharam, M.D.; Order, S.E.

    1983-10-01

    Thoracic CT scans were performed on 42 newly diagnosed patients with Hodgkin's disease. Five of 10 patients with negative chest X ray (CXR) had abnormal thoracic CT scans. Among the remaining 32 patients with mediastinal Hodgkin's disease (MHD) on CXR, pericardial (Ep) and chest wall invasion (Ec) were the two most common sites of involvement which were detectable by CT scan alone. Ep and Ec accounted for 16 of 19 of the changes in treatment portal or philosophy based on CT scan findings. Because of the high risk of cardiac or pulmonary radiation toxicity in Ep or Ec, radiation treatment alone may be inadequate. Treatment of mediastinal Hodgkin's disease is reviewed here. The use of CT scans for identification of Ep, Ec, and other abnormalities will allow for more precise treatment, further define the use of conventional radiotherapy, combined modality therapy or whole lung irradiation, and allow more accurate analysis of treatment results.

  12. Knowledge Representation Of CT Scans Of The Head

    NASA Astrophysics Data System (ADS)

    Ackerman, Laurens V.; Burke, M. W.; Rada, Roy

    1984-06-01

    We have been investigating diagnostic knowledge models which assist in the automatic classification of medical images by combining information extracted from each image with knowledge specific to that class of images. In a more general sense we are trying to integrate verbal and pictorial descriptions of disease via representations of knowledge, study automatic hypothesis generation as related to clinical medicine, evolve new mathematical image measures while integrating them into the total diagnostic process, and investigate ways to augment the knowledge of the physician. Specifically, we have constructed an artificial intelligence knowledge model using the technique of a production system blending pictorial and verbal knowledge about the respective CT scan and patient history. It is an attempt to tie together different sources of knowledge representation, picture feature extraction and hypothesis generation. Our knowledge reasoning and representation system (KRRS) works with data at the conscious reasoning level of the practicing physician while at the visual perceptional level we are building another production system, the picture parameter extractor (PPE). This paper describes KRRS and its relationship to PPE.

  13. Osmotic blood-brain barrier modification: clinical documentation by enhanced CT scanning and/or radionuclide brain scanning

    SciTech Connect

    Neuwelt, E.A.; Specht, H.D.; Howieson, J.; Haines, J.E.; Bennett, M.J.; Hill, S.A.; Frenkel, E.P.

    1983-10-01

    Results of initial clinical trials of brain tumor chemotherapy after osmotic blood-brain barrier disruption are promising. In general, the procedure is well tolerated. The major complication has been seizures. In this report, data are presented which indicate that the etiology of these seizures is related to the use of contrast agent (meglumine iothalamate) to monitor barrier modification. A series of 19 patients underwent a total of 85 barrier modification procedures. Documentation of barrier disruption was monitored by contrast-enhanced computed tomographic (CT) scanning, radionuclide brain scanning, or a combination of both techniques. In 56 procedures (19 patients) monitored by enhanced CT, seizures occurred a total of 10 times in eight patients. Twenty-three barrier modification procedures (in nine of these 19 patients) documented by nuclear brain scans alone, however, resulted in only one focal motor seizure in each of two patients. In eight of the 19 patients who had seizures after barrier disruption and enhanced CT scan, four subsequently had repeat procedures monitored by radionuclide scan alone. In only one of these patients was further seizure activity noted; a single focal motor seizure was observed. Clearly, the radionuclide brain scan does not have the sensitivity and spatial resolution of enhanced CT, but at present it appears safer to monitor barrier modification by this method and to follow tumor growth between barrier modifications by enhanced CT. Four illustrative cases showing methods, problems, and promising results are presented.

  14. A high-resolution field-emission-gun, scanning electron microscope investigation of anisotropic hydrogen decrepitation in Nd-Fe-B-based sintered magnets

    SciTech Connect

    Soderznik, Marko; McGuiness, Paul; Zuzek-Rozman, Kristina; Kobe, Spomenka; Skulj, Irena; Yan Gaolin

    2010-05-15

    In this investigation commercial magnets based on (Nd,Dy){sub 14}(Fe,Co){sub 79}B{sub 7} were prepared by a conventional powder-metallurgy route with a degree of alignment equal to {approx}90% and then exposed to hydrogen at a pressure of 1 bar. The magnets, in the form of cylinders, were observed to decrepitate exclusively from the ends. High-resolution electron microscopy was able to identify the presence of crack formation within the Nd{sub 2}Fe{sub 14}B grains, with the cracks running parallel to the c axis of these grains. Based on the concentration profile for hydrogen in a rare-earth transition-metal material, it is clear that the presence of hydrogen-induced cracks running perpendicular to the ends of the magnet provides for a much more rapidly progressing hydrogen front in this direction than from the sides of the magnet. This results in the magnet exhibiting a macroscopic tendency to decrepitate from the poles of the magnet toward the center. This combination of microstructural modification via particle alignment as part of the sintering process and direct observation via high-resolution electron microscopy has led to a satisfying explanation for the anisotropic hydrogen-decrepitation effect.

  15. 18F-FDG PET of the hands with a dedicated high-resolution PEM system (arthro-PET): correlation with PET/CT, radiography and clinical parameters

    PubMed Central

    Mhlanga, Joyce C.; Carrino, John A.; Lodge, Martin; Wang, Hao

    2015-01-01

    Purpose The aim of this study was to prospectively determine the feasibility and compare the novel use of a positron emission mammography (PEM) scanner with standard PET/CT for evaluating hand osteoarthritis (OA) with 18F-FDG. Methods Institutional review board approval and written informed consent were obtained for this HIPAA-compliant prospective study in which 14 adults referred for oncological 18F-FDG PET/CT underwent dedicated hand PET/CT followed by arthro-PET using the PEM device. Hand radiographs were obtained and scored for the presence and severity of OA. Summed qualitative and quantitative joint glycolytic scores for each modality were compared with the findings on plain radiography and clinical features. Results Eight patients with clinical and/or radiographic evidence of OA comprised the OA group (mean age 73±7.7 years). Six patients served as the control group (53.7±9.3 years). Arthro-PET quantitative and qualitative joint glycolytic scores were highly correlated with PET/CT findings in the OA patients (r=0.86. p =0.007; r=0.94, p=0.001). Qualitative arthro-PET and PET/CT joint scores were significantly higher in the OA patients than in controls (38.7±6.6 vs. 32.2±0.4, p=0.02; 37.5±5.4 vs. 32.2±0.4, p=0.03, respectively). Quantitative arthro-PET and PET/CT maximum SUV-lean joint scores were higher in the OA patients, although they did not reach statistical significance (20.8±4.2 vs. 18±1.8, p= 0.13; 22.8±5.38 vs. 20.1±1.54, p=0.21). By definition, OA patients had higher radiographic joint scores than controls (30.9±31.3 vs. 0, p=0.03). Conclusion Hand imaging using a small field of view PEM system (arthro-PET) with FDG is feasible, performing comparably to PET/CT in assessing metabolic joint activity. Arthro-PET and PET/CT showed higher joint FDG uptake in OA. Further exploration of arthro-PET in arthritis management is warranted. PMID:25134669

  16. Improving In Vivo High-Resolution CT Imaging of the Tumour Vasculature in Xenograft Mouse Models through Reduction of Motion and Bone-Streak Artefacts

    PubMed Central

    Kersemans, Veerle; Kannan, Pavitra; Beech, John S.; Bates, Russell; Irving, Benjamin; Gilchrist, Stuart; Allen, Philip D.; Thompson, James; Kinchesh, Paul; Casteleyn, Christophe; Schnabel, Julia; Partridge, Mike; Muschel, Ruth J.; Smart, Sean C.

    2015-01-01

    Introduction Preclinical in vivo CT is commonly used to visualise vessels at a macroscopic scale. However, it is prone to many artefacts which can degrade the quality of CT images significantly. Although some artefacts can be partially corrected for during image processing, they are best avoided during acquisition. Here, a novel imaging cradle and tumour holder was designed to maximise CT resolution. This approach was used to improve preclinical in vivo imaging of the tumour vasculature. Procedures A custom built cradle containing a tumour holder was developed and fix-mounted to the CT system gantry to avoid artefacts arising from scanner vibrations and out-of-field sample positioning. The tumour holder separated the tumour from bones along the axis of rotation of the CT scanner to avoid bone-streaking. It also kept the tumour stationary and insensitive to respiratory motion. System performance was evaluated in terms of tumour immobilisation and reduction of motion and bone artefacts. Pre- and post-contrast CT followed by sequential DCE-MRI of the tumour vasculature in xenograft transplanted mice was performed to confirm vessel patency and demonstrate the multimodal capacity of the new cradle. Vessel characteristics such as diameter, and branching were quantified. Results Image artefacts originating from bones and out-of-field sample positioning were avoided whilst those resulting from motions were reduced significantly, thereby maximising the resolution that can be achieved with CT imaging in vivo. Tumour vessels ≥ 77 μm could be resolved and blood flow to the tumour remained functional. The diameter of each tumour vessel was determined and plotted as histograms and vessel branching maps were created. Multimodal imaging using this cradle assembly was preserved and demonstrated. Conclusions The presented imaging workflow minimised image artefacts arising from scanner induced vibrations, respiratory motion and radiopaque structures and enabled in vivo CT imaging

  17. Patient dose estimation from CT scans at the Mexican National Neurology and Neurosurgery Institute

    SciTech Connect

    Alva-Sánchez, Héctor

    2014-11-07

    In the radiology department of the Mexican National Institute of Neurology and Neurosurgery, a dedicated institute in Mexico City, on average 19.3 computed tomography (CT) examinations are performed daily on hospitalized patients for neurological disease diagnosis, control scans and follow-up imaging. The purpose of this work was to estimate the effective dose received by hospitalized patients who underwent a diagnostic CT scan using typical effective dose values for all CT types and to obtain the estimated effective dose distributions received by surgical and non-surgical patients. Effective patient doses were estimated from values per study type reported in the applications guide provided by the scanner manufacturer. This retrospective study included all hospitalized patients who underwent a diagnostic CT scan between 1 January 2011 and 31 December 2012. A total of 8777 CT scans were performed in this two-year period. Simple brain scan was the CT type performed the most (74.3%) followed by contrasted brain scan (6.1%) and head angiotomography (5.7%). The average number of CT scans per patient was 2.83; the average effective dose per patient was 7.9 mSv; the mean estimated radiation dose was significantly higher for surgical (9.1 mSv) than non-surgical patients (6.0 mSv). Three percent of the patients had 10 or more brain CT scans and exceeded the organ radiation dose threshold set by the International Commission on Radiological Protection for deterministic effects of the eye-lens. Although radiation patient doses from CT scans were in general relatively low, 187 patients received a high effective dose (>20 mSv) and 3% might develop cataract from cumulative doses to the eye lens.

  18. Patient dose estimation from CT scans at the Mexican National Neurology and Neurosurgery Institute

    NASA Astrophysics Data System (ADS)

    Alva-Sánchez, Héctor; Reynoso-Mejía, Alberto; Casares-Cruz, Katiuzka; Taboada-Barajas, Jesús

    2014-11-01

    In the radiology department of the Mexican National Institute of Neurology and Neurosurgery, a dedicated institute in Mexico City, on average 19.3 computed tomography (CT) examinations are performed daily on hospitalized patients for neurological disease diagnosis, control scans and follow-up imaging. The purpose of this work was to estimate the effective dose received by hospitalized patients who underwent a diagnostic CT scan using typical effective dose values for all CT types and to obtain the estimated effective dose distributions received by surgical and non-surgical patients. Effective patient doses were estimated from values per study type reported in the applications guide provided by the scanner manufacturer. This retrospective study included all hospitalized patients who underwent a diagnostic CT scan between 1 January 2011 and 31 December 2012. A total of 8777 CT scans were performed in this two-year period. Simple brain scan was the CT type performed the most (74.3%) followed by contrasted brain scan (6.1%) and head angiotomography (5.7%). The average number of CT scans per patient was 2.83; the average effective dose per patient was 7.9 mSv; the mean estimated radiation dose was significantly higher for surgical (9.1 mSv) than non-surgical patients (6.0 mSv). Three percent of the patients had 10 or more brain CT scans and exceeded the organ radiation dose threshold set by the International Commission on Radiological Protection for deterministic effects of the eye-lens. Although radiation patient doses from CT scans were in general relatively low, 187 patients received a high effective dose (>20 mSv) and 3% might develop cataract from cumulative doses to the eye lens.

  19. Physical evaluation of CT scan methods for radiation therapy planning: comparison of fast, slow and gating scan using the 256-detector row CT scanner

    NASA Astrophysics Data System (ADS)

    Mori, Shinichiro; Kanematsu, Nobuyuki; Mizuno, Hideyuki; Sunaoka, Masayoshi; Endo, Masahiro

    2006-02-01

    Although slow-rotation CT scanning (slow-scan CT: SSCT) has been used for radiation therapy planning, based on the rationale that the average duration of the human respiratory cycle is 4 s, a number of physical and quantitative questions require answering before it can be adopted for clinical use. This study was performed to evaluate SSCT physically in comparison with other scan methods, including respiratory-gated CT (RGCT), and to develop procedures to improve treatment accuracy. Evaluation items were geometrical accuracy, volume accuracy, water equivalent length and dose distribution using the 256-detector row CT with three scan methods. Fast-scan CT (FSCT) was defined as obtaining all respiratory phases in cine scan mode at 1.0 s per rotation. FSCT-ave was the averaged FSCT images in all respiratory phases, obtained by reconstructing short time intervals. SSCT has been defined as scanning with slow gantry rotation to capture the whole respiratory cycle in one rotation. RGCT was scanned at the most stable point in the respiratory cycle, which provides the same image as that by FSCT at the most stable point. Results showed that all evaluation items were dependent on motion characteristics. The findings of this study indicate that 3D planning based solely on SSCT under free breathing may result in underdosing of the target volume and increase toxicity to surrounding normal tissues. Of the three methods, RGCT showed the best ability to significantly increase the accuracy of dose distribution, and provided more information to minimize the margins. FSCT-ave is a satisfactory radiotherapy planning alternative if RGCT is not available.

  20. Mutation scanning in a single and a stacked genetically modified (GM) event by real-time PCR and high resolution melting (HRM) analysis.

    PubMed

    Ben Ali, Sina-Elisabeth; Madi, Zita Erika; Hochegger, Rupert; Quist, David; Prewein, Bernhard; Haslberger, Alexander G; Brandes, Christian

    2014-01-01

    Genetic mutations must be avoided during the production and use of seeds. In the European Union (EU), Directive 2001/18/EC requires any DNA construct introduced via transformation to be stable. Establishing genetic stability is critical for the approval of genetically modified organisms (GMOs). In this study, genetic stability of two GMOs was examined using high resolution melting (HRM) analysis and real-time polymerase chain reaction (PCR) employing Scorpion primers for amplification. The genetic variability of the transgenic insert and that of the flanking regions in a single oilseed rape variety (GT73) and a stacked maize (MON88017×MON810) was studied. The GT73 and the 5' region of MON810 showed no instabilities in the examined regions. However; two out of 100 analyzed samples carried a heterozygous point mutation in the 3' region of MON810 in the stacked variety. These results were verified by direct sequencing of the amplified PCR products as well as by sequencing of cloned PCR fragments. The occurrence of the mutation suggests that the 5' region is more suitable than the 3' region for the quantification of MON810. The identification of the single nucleotide polymorphism (SNP) in a stacked event is in contrast to the results of earlier studies of the same MON810 region in a single event where no DNA polymorphism was found. PMID:25365178

  1. Mutation Scanning in a Single and a Stacked Genetically Modified (GM) Event by Real-Time PCR and High Resolution Melting (HRM) Analysis

    PubMed Central

    Ben Ali, Sina-Elisabeth; Madi, Zita Erika; Hochegger, Rupert; Quist, David; Prewein, Bernhard; Haslberger, Alexander G.; Brandes, Christian

    2014-01-01

    Genetic mutations must be avoided during the production and use of seeds. In the European Union (EU), Directive 2001/18/EC requires any DNA construct introduced via transformation to be stable. Establishing genetic stability is critical for the approval of genetically modified organisms (GMOs). In this study, genetic stability of two GMOs was examined using high resolution melting (HRM) analysis and real-time polymerase chain reaction (PCR) employing Scorpion primers for amplification. The genetic variability of the transgenic insert and that of the flanking regions in a single oilseed rape variety (GT73) and a stacked maize (MON88017 × MON810) was studied. The GT73 and the 5' region of MON810 showed no instabilities in the examined regions. However; two out of 100 analyzed samples carried a heterozygous point mutation in the 3' region of MON810 in the stacked variety. These results were verified by direct sequencing of the amplified PCR products as well as by sequencing of cloned PCR fragments. The occurrence of the mutation suggests that the 5' region is more suitable than the 3' region for the quantification of MON810. The identification of the single nucleotide polymorphism (SNP) in a stacked event is in contrast to the results of earlier studies of the same MON810 region in a single event where no DNA polymorphism was found. PMID:25365178

  2. Full-Body CT Scans - What You Need to Know

    MedlinePlus

    ... FDA Submit search Popular Content Home Food Drugs Medical Devices Radiation-Emitting Products Vaccines, Blood & Biologics Animal & Veterinary ... for assuring the safety and effectiveness of such medical devices, and it prohibits manufacturers of CT systems to ...

  3. Role of Erosion on Closely-Spaced Fault Scarps: High-resolution Laser Scanning Data and Scarp Diffusion Modelling of the Rex Hills Flower Structure, Nevada

    NASA Astrophysics Data System (ADS)

    Baran, R.; Guest, B.; Friedrich, A. M.

    2007-12-01

    Flower structures are often associated with strike-slip faults. Their subsurface geometry is well known but additional information about their geometry and kinematics is also contained in their surface expression, especially in surfaces exhibiting closely-spaced fault scarps. However, detailed surface descriptions of flower structures are rare. Here, we present for the first time topographic profiles extracted from high-resolution digital elevation model (DEM) data using a ground-based laser scanner (Riegl company) to examine the surface expression of a flower structure in great detail. Our study site, the Rex Hills flower structure (40 m high, ~1 km long), is located on the transpressional left-bend between the Pahrump and Amargosa segments of the dextral Stateline fault system (Guest et al., 2007, GSAB). The southern Rex Hills slope exhibits three reverse fault- scarp generations related to three reverse fault branches, respectively. The basal scarp is the youngest and most continuous one. It exhibits five fault segments with an approximately constant displacement along the scarp. The upper two fault-scarp generations are less continuous, and older. The topography of the southern Rex Hills slope also is characterized by alternating valleys and ridges (each ~100 m long) extending perpendicular to the main ridge crest. Our analysis shows that fault scarp morphology varies laterally along this slope. Scarps exposed on ridge crests are typically more numerous (up to 4-5 scarps) and smaller (on average 5 m high), whereas adjacent valleys often exhibit single large (>10 m high) scarps. The larger valley-scarps did not result from the offset across a single fault branch, but resulted from merging of the three scarps mentioned above by enhanced scarp degradation. The preservation potential of small, individual scarps is therefore better on ridge crests relative to adjacent valleys. Assuming a known age of 2 kyrs (Menges et al., 2003, AGU), we examined the spatial

  4. Concepts and Analyses in the CT Scanning of Root Systems and Leaf Canopies: A Timely Summary

    PubMed Central

    Lafond, Jonathan A.; Han, Liwen; Dutilleul, Pierre

    2015-01-01

    Non-medical applications of computed tomography (CT) scanning have flourished in recent years, including in Plant Science. This Perspective article on CT scanning of root systems and leaf canopies is intended to be of interest to three categories of readers: those who have not yet tried plant CT scanning, and should find inspiration for new research objectives; readers who are on the learning curve with applications—here is helpful advice for them; and researchers with greater experience—the field is evolving quickly and it is easy to miss aspects. Our conclusion is that CT scanning of roots and canopies is highly demanding in terms of technology, multidisciplinarity and big-data analysis, to name a few areas of expertise, but eventually, the reward for researchers is directly proportional! PMID:26734022

  5. Few CT Scan Abnormalities Found Even in Neurologically Impaired Learning Disabled Children.

    ERIC Educational Resources Information Center

    Denckla, Martha Bridge; And Others

    1985-01-01

    Most of 32 learning disabled children (seven to 14 years old) with neurological lateralization characteristics marked by right and left hemispheres had a normal CT (computerized tomography) scan. (CL)

  6. Concepts and Analyses in the CT Scanning of Root Systems and Leaf Canopies: A Timely Summary.

    PubMed

    Lafond, Jonathan A; Han, Liwen; Dutilleul, Pierre

    2015-01-01

    Non-medical applications of computed tomography (CT) scanning have flourished in recent years, including in Plant Science. This Perspective article on CT scanning of root systems and leaf canopies is intended to be of interest to three categories of readers: those who have not yet tried plant CT scanning, and should find inspiration for new research objectives; readers who are on the learning curve with applications-here is helpful advice for them; and researchers with greater experience-the field is evolving quickly and it is easy to miss aspects. Our conclusion is that CT scanning of roots and canopies is highly demanding in terms of technology, multidisciplinarity and big-data analysis, to name a few areas of expertise, but eventually, the reward for researchers is directly proportional! PMID:26734022

  7. Pictorial essay: CT scan of appendicitis and its mimics causing right lower quadrant pain

    PubMed Central

    Sharma, Monika; Agrawal, Anjali

    2008-01-01

    CT scanning is widely used in the diagnostic workup of right lower quadrant pain. While appendicitis remains the most frequent cause, a majority of patients referred for suspected appendicitis turn out to have alternative diagnoses or a normal CT study. The purpose of our pictorial essay is to present an overview of the CT findings of appendicitis and its common mimics and to highlight the features that provide clues to alternative diagnoses.

  8. Advances in optical CT scanning for gel dosimetry

    NASA Astrophysics Data System (ADS)

    Jordan, K.

    2004-01-01

    Optical computed tomography (CT) is physically similar to x-ray CT but is more versatile since many powerful light sources exist and optical elements such as mirrors, lenses, polarizers and efficient detectors are available. There are many potential forms of optical CT. Attenuation, fluorescence or scatter, polarization and refractive index spatial changes are all examples of optical CT. To date, optical CT for gel dosimetry has been limited to attenuation measurements that are the sum of scatter and absorption along defined lines. Polymerization gels turn white with absorbed dose and attenuation is due to scatter. Radiochromic gels also form a dose image due to changes in visible absorption. This short review concentrates on the papers published since the DOSGEL 2001 meeting and highlights experimental results and issues that are important for obtaining good quality input data for reconstruction. The format involves selected highlights from the papers and associated points from our experience with optical CT experimentation. The comments are intended to assist researchers unfamiliar with optical measurements to obtain high quality transmission data, a necessary step in quantitative gel dosimetry.

  9. Acquisition, preprocessing, and reconstruction of ultralow dose volumetric CT scout for organ-based CT scan planning

    SciTech Connect

    Yin, Zhye De Man, Bruno; Yao, Yangyang; Wu, Mingye; Montillo, Albert; Edic, Peter M.; Kalra, Mannudeep

    2015-05-15

    Purpose: Traditionally, 2D radiographic preparatory scan images (scout scans) are used to plan diagnostic CT scans. However, a 3D CT volume with a full 3D organ segmentation map could provide superior information for customized scan planning and other purposes. A practical challenge is to design the volumetric scout acquisition and processing steps to provide good image quality (at least good enough to enable 3D organ segmentation) while delivering a radiation dose similar to that of the conventional 2D scout. Methods: The authors explored various acquisition methods, scan parameters, postprocessing methods, and reconstruction methods through simulation and cadaver data studies to achieve an ultralow dose 3D scout while simultaneously reducing the noise and maintaining the edge strength around the target organ. Results: In a simulation study, the 3D scout with the proposed acquisition, preprocessing, and reconstruction strategy provided a similar level of organ segmentation capability as a traditional 240 mAs diagnostic scan, based on noise and normalized edge strength metrics. At the same time, the proposed approach delivers only 1.25% of the dose of a traditional scan. In a cadaver study, the authors’ pictorial-structures based organ localization algorithm successfully located the major abdominal-thoracic organs from the ultralow dose 3D scout obtained with the proposed strategy. Conclusions: The authors demonstrated that images with a similar degree of segmentation capability (interpretability) as conventional dose CT scans can be achieved with an ultralow dose 3D scout acquisition and suitable postprocessing. Furthermore, the authors applied these techniques to real cadaver CT scans with a CTDI dose level of less than 0.1 mGy and successfully generated a 3D organ localization map.

  10. Micro computed tomography (CT) scanned anatomical gateway to insect pest bioinformatics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An international collaboration to establish an interactive Digital Video Library for a Systems Biology Approach to study the Asian citrus Psyllid and psyllid genomics/proteomics interactions is demonstrated. Advances in micro-CT, digital computed tomography (CT) scan uses X-rays to make detailed pic...

  11. Dual energy micro CT SkyScan 1173 for the characterization of urinary stone

    NASA Astrophysics Data System (ADS)

    Fitri, L. A.; Asyana, V.; Ridwan, T.; Anwary, F.; Soekersi, H.; Latief, F. D. E.; Haryanto, F.

    2016-03-01

    Knowledge of the composition of urinary stones is an essential part to determine suitable treatments for patients. The aim of this research is to characterize the urinary stones by using dual energy micro CT SkyScan 11173. This technique combines high-energy and low- energy scanning during a single acquisition. Six human urinary stones were scanned in vitro using 80 kV and 120 kV micro CT SkyScan 1173. Projected images were produced by micro CT SkyScan 1173 and then reconstructed using NRecon (in-house software from SkyScan) to obtain a complete 3D image. The urinary stone images were analysed using CT analyser to obtain information of internal structure and Hounsfield Unit (HU) values to determine the information regarding the composition of the urinary stones, respectively. HU values obtained from some regions of interest in the same slice are compared to a reference HU. The analysis shows information of the composition of the six scanned stones obtained. The six stones consist of stone number 1 (calcium+cystine), number 2 (calcium+struvite), number 3 (calcium+cystine+struvite), number 4 (calcium), number 5 (calcium+cystine+struvite), and number 6 (calcium+uric acid). This shows that dual energy micro CT SkyScan 1173 was able to characterize the composition of the urinary stone.

  12. High-resolution echocardiography

    NASA Technical Reports Server (NTRS)

    Nathan, R.

    1979-01-01

    High resolution computer aided ultrasound system provides two-and three-dimensional images of beating heart from many angles. System provides means for determining whether small blood vessels around the heart are blocked or if heart wall is moving normally without interference of dead and noncontracting muscle tissue.

  13. High-resolution headlamp

    NASA Astrophysics Data System (ADS)

    Gut, Carsten; Cristea, Iulia; Neumann, Cornelius

    2016-04-01

    The following article shall describe how human vision by night can be influenced. At first, front lighting systems that are already available on the market will be described, followed by their analysis with respect to the positive effects on traffic safety. Furthermore, how traffic safety by night can be increased since the introduction of high resolution headlamps shall be discussed.

  14. A redescription of Carrolla craddocki (Lepospondyli: Brachystelechidae) based on high-resolution CT, and the impacts of miniaturization and fossoriality on morphology.

    PubMed

    Maddin, Hillary C; Olori, Jennifer C; Anderson, Jason S

    2011-06-01

    Some recent morphological analyses have brought into question the monophyly of Lissamphibia (frogs, salamanders, and caecilians). In these analyses, brachystelechid "microsaurs" are found to be sister group to caecilians. To test this hypothesis, the holotype specimen of the brachystelechid Carrolla craddocki was submitted to high-resolution X-ray computed tomography to gain insight into the nature of the morphology supporting the potential relationship between brachystelechids and caecilians. This analysis enabled us to conduct a detailed description of the internal anatomy such as the braincase and otic capsule endocast (the first of its kind for a lepospondyl), and new information regarding the architecture of the skull. Our results suggest brachystelechid cranial morphology is strongly influenced by miniaturization (enlarged sensory organs, anterior placement of the jaw articulation, and combination of both reduced- and hyper-ossifications) and burrowing habits (co-ossified braincase with broad, sloping occipital surface, overlapping joints between skull roof bones, and well-ossified anterior braincase). Characteristics of brachystelechids that appear unrelated to size-reduction and burrowing are the diamond-shaped skull and possible pedicellate dentition. We provide a revised diagnosis for Carrolla and identify possible new characters within the anatomy of the braincase and inner ear. Several characters currently uniting caecilians and "microsaurs" are among those associated with either miniaturization or burrowing, demonstrating that future efforts should continue to focus on fine details of anatomy minimally affected by these influences to contribute to the resolution of the question of the origin of caecilians. PMID:21484854

  15. High-Resolution Imaging Spectrometer

    NASA Technical Reports Server (NTRS)

    Dozier, Jeff; Goetz, Alexander F. H.

    1990-01-01

    Earth resources observed in greater detail. High-Resolution Imaging Spectrometer, undergoing development for use in NASA's Earth Observing System, measures reflectance of Earth's surface in visible and near-infrared wavelengths. From an orbit around Earth, instrument scans surface of Earth in 200 wavelength bands simultaneously. Produces images enabling identification of minerals in rocks and soils, important algal pigments in oceans and inland waters, changes in spectra associated with biochemistry of plant canopies, compositions of atmospheric aerosols, sizes of grains in snow, and contamination of snow by impurities that absorb visible light.

  16. Increase in dicentric chromosome formation after a single CT scan in adults

    PubMed Central

    Abe, Yu; Miura, Tomisato; Yoshida, Mitsuaki A.; Ujiie, Risa; Kurosu, Yumiko; Kato, Nagisa; Katafuchi, Atsushi; Tsuyama, Naohiro; Ohba, Takashi; Inamasu, Tomoko; Shishido, Fumio; Noji, Hideyoshi; Ogawa, Kazuei; Yokouchi, Hiroshi; Kanazawa, Kenya; Ishida, Takashi; Muto, Satoshi; Ohsugi, Jun; Suzuki, Hiroyuki; Ishikawa, Tetsuo; Kamiya, Kenji; Sakai, Akira

    2015-01-01

    Excess risk of leukemia and brain tumors after CT scans in children has been reported. We performed dicentric chromosome assay (DCAs) before and after CT scan to assess effects of low-dose ionizing radiation on chromosomes. Peripheral blood (PB) lymphocytes were collected from 10 patients before and after a CT scan. DCA was performed by analyzing either 1,000 or 2,000 metaphases using both Giemsa staining and centromere-fluorescence in situ hybridization (Centromere-FISH). The increment of DIC formation was compared with effective radiation dose calculated using the computational dosimetry system, WAZA-ARI and dose length product (DLP) in a CT scan. Dicentric chromosome (DIC) formation increased significantly after a single CT scan, and increased DIC formation was found in all patients. A good correlation between the increment of DIC formation determined by analysis of 2,000 metaphases using Giemsa staining and those by 2,000 metaphases using Centromere-FISH was observed. However, no correlation was observed between the increment of DIC formation and the effective radiation dose. Therefore, these results suggest that chromosome cleavage may be induced by one CT scan, and we recommend 2,000 or more metaphases be analyzed in Giemsa staining or Centromere-FISH for DCAs in cases of low-dose radiation exposure. PMID:26349546

  17. Increase in dicentric chromosome formation after a single CT scan in adults.

    PubMed

    Abe, Yu; Miura, Tomisato; Yoshida, Mitsuaki A; Ujiie, Risa; Kurosu, Yumiko; Kato, Nagisa; Katafuchi, Atsushi; Tsuyama, Naohiro; Ohba, Takashi; Inamasu, Tomoko; Shishido, Fumio; Noji, Hideyoshi; Ogawa, Kazuei; Yokouchi, Hiroshi; Kanazawa, Kenya; Ishida, Takashi; Muto, Satoshi; Ohsugi, Jun; Suzuki, Hiroyuki; Ishikawa, Tetsuo; Kamiya, Kenji; Sakai, Akira

    2015-01-01

    Excess risk of leukemia and brain tumors after CT scans in children has been reported. We performed dicentric chromosome assay (DCAs) before and after CT scan to assess effects of low-dose ionizing radiation on chromosomes. Peripheral blood (PB) lymphocytes were collected from 10 patients before and after a CT scan. DCA was performed by analyzing either 1,000 or 2,000 metaphases using both Giemsa staining and centromere-fluorescence in situ hybridization (Centromere-FISH). The increment of DIC formation was compared with effective radiation dose calculated using the computational dosimetry system, WAZA-ARI and dose length product (DLP) in a CT scan. Dicentric chromosome (DIC) formation increased significantly after a single CT scan, and increased DIC formation was found in all patients. A good correlation between the increment of DIC formation determined by analysis of 2,000 metaphases using Giemsa staining and those by 2,000 metaphases using Centromere-FISH was observed. However, no correlation was observed between the increment of DIC formation and the effective radiation dose. Therefore, these results suggest that chromosome cleavage may be induced by one CT scan, and we recommend 2,000 or more metaphases be analyzed in Giemsa staining or Centromere-FISH for DCAs in cases of low-dose radiation exposure. PMID:26349546

  18. Implementation of a parallel-beam optical-CT apparatus for three-dimensional radiation dosimetry using a high-resolution CCD camera

    NASA Astrophysics Data System (ADS)

    Huang, Wen-Tzeng; Chen, Chin-Hsing; Hung, Chao-Nan; Tuan, Chiu-Ching; Chang, Yuan-Jen

    2015-06-01

    In this study, a charge-coupled device (CCD) camera with 2-megapixel (1920×1080-pixel) and 12-bit resolution was developed for optical computed tomography(optical CT). The signal-to-noise ratio (SNR) of our system was 30.12 dB, better than that of commercially available CCD cameras (25.31 dB). The 50% modulation transfer function (MTF50) of our 1920×1080-pixel camera gave a line width per picture height (LW/PH) of 745, which is 73% of the diffraction-limited resolution. Compared with a commercially available 1-megapixel CCD camera (1296×966-pixel) with a LW/PH=358 and 46.6% of the diffraction-limited resolution, our camera system provided higher spatial resolution and better image quality. The NIPAM gel dosimeter was used to evaluate the optical CT with a 2-megapixel CCD. A clinical five-field irradiation treatment plan was generated using the Eclipse planning system (Varian Corp., Palo Alto, CA, USA). The gel phantom was irradiated using a 6-MV Varian Clinac IX linear accelerator (Varian). The measured NIPAM gel dose distributions and the calculated dose distributions, generated by the treatment planning software (TPS), were compared using the 3% dose-difference and 3 mm distance-to-agreement criteria. The gamma pass rate was as high as 98.2% when 2-megapixel CCD camera was used in optical CT. However, the gamma pass rate was only 96.0% when a commercially available 1-megapixel CCD camera was used.

  19. Osmotic blood-brain barrier modification: clinical documentation by enhanced CT scanning and/or radionuclide brain scanning

    SciTech Connect

    Neuwelt, E.A; Specht, H.D.; Howieson, J.; Haines, J.E.; Bennett, M.J.; Hill, S.A.; Frenkel, E.P.

    1983-10-01

    Results of initial clinical trials of brain tumor chemotherapy after osmotic blood-brain barrier disruption are promising. In general, the procedure is well tolerated. The major complication has been seizures. In this report, data are presented which indicate that the etiology of these seizures is related to the use of contrast agent (meglumine iothalamate) to monitor barrier modification. A series of 19 patients underwent a total of 85 barrier modification procedures. Documentation of barrier disruption was monitored by contrast-enhanced computed tomographic (CT) scanning, radionuclide brain scanning, or a combination of both techniques. In 56 procedures (19 patients) monitored by enhanced CT, seizures occurred a total of 10 times in eight patients. Twenty-three barrier modification procedures (in nine of these 19 patients) documented by nuclear brain scans alone, however, resulted in only one focal motor seizure in each of two patients. Clearly, the radionuclide brain scan does not have the sensitivity and spatial resolution of enhanced CT, but at present it appears safer to monitor barrier modification by this method and to follow tumor growth between barrier modifications by enhanced CT. Four illustrative cases showing methods, problems, and promising results are presented.

  20. Assessing the three-dimensional collagen network in soft tissues using contrast agents and high resolution micro-CT: Application to porcine iliac veins.

    PubMed

    Nierenberger, Mathieu; Rémond, Yves; Ahzi, Saïd; Choquet, Philippe

    2015-07-01

    The assessment of the three-dimensional architecture of collagen fibers inside vessel walls constitutes one of the bases for building structural models for the description of the mechanical behavior of these tissues. Multiphoton microscopy allows for such observations, but is limited to volumes of around a thousand of microns. In the present work, we propose to observe the collagenous network of vascular tissues using micro-CT. To get a contrast, three staining solutions (phosphotungstic acid, phosphomolybdic acid and iodine potassium iodide) were tested. Two of these stains were showed to lead to similar results and to a satisfactory contrast within the tissue. A detailed observation of a small porcine iliac vein sample allowed assessing the collagen fibers orientations within the medial and adventitial layers of the vein. The vasa vasorum network, which is present inside the adventitia of the vein, was also observed. Finally, the demonstrated micro-CT staining technique for the three-dimensional observation of thin soft tissues samples, like vein walls, contributes to the assessment of their structure at different scales while keeping a global overview of the tissue. PMID:26033495

  1. High-resolution CT in simple coal workers' pneumoconiosis. Lack of correlation with pulmonary function tests and arterial blood gas values.

    PubMed

    Collins, L C; Willing, S; Bretz, R; Harty, M; Lane, E; Anderson, W H

    1993-10-01

    We examined 21 miners by means of standard chest radiography, high-resolution computerized tomography (HRCT), pulmonary function tests, and resting arterial blood gas levels. Using the ILO/UC classification of pneumoconiosis, 7 miners had category 1/0 or 2/1 simple coal workers' pneumoconiosis (CWP). By HRCT, nodules were identified in 12 miners; 4 of 9 were classified as category 0/0 CWP; 2 of 5, 0/1 CWP; 5 of 6, 1/0 CWP; and 1 of 1, 2/1 CWP by chest radiograph. Focal emphysema was identified by HRCT in 7 miners; 4 of 9 were classified as 0/0 CWP; 2 of 5, 0/1 CWP; and 1 of 6, 1/0 CWP by standard chest radiography. Four miners with definite nodules confirmed by HRCT had focal emphysema, while three without nodules had focal emphysema. Pulmonary function testing was not different between miners with or without CWP by standard chest radiography, nor was it different between miners with or without definite nodules evidenced by HRCT. No difference in resting oxygenation was found between any group of miners. The presence of focal emphysema confirmed by HRCT did not significantly affect pulmonary function tests on resting arterial blood gas values. There was, however, a significantly lower FEV1 and mean forced expiratory flow during the middle half of forced vital capacity with lifetime nonsmoking miners. The presence of CWP on chest radiography was significantly correlated with smoking cigarettes but not the years of mining. The presence of nodules on HRCT approached a significant correlation with cigarette smoking, but focal emphysema did not. For detecting evidence of coal dust accumulation in lung parenchyma and identifying focal emphysema, HRCT was more sensitive than standard chest radiography. However, despite earlier detection of parenchymal abnormalities, abnormal pulmonary function attributable to coal dust could not be identified. PMID:8404184

  2. High-resolution CT in simple coal workers' pneumoconiosis. Lack of correlation with pulmonary function tests and arterial blood gas values

    SciTech Connect

    Collins, L.C.; Willing, S.; Bretz, R.; Harty, M.; Lane, E.; Anderson, W.H. )

    1993-10-01

    We examined 21 miners by means of standard chest radiography, high-resolution computerized tomography (HRCT), pulmonary function tests, and resting arterial blood gas levels. Using the ILO/UC classification of pneumoconiosis, 7 miners had category 1/0 or 2/1 simple coal workers' pneumoconiosis (CWP). By HRCT, nodules were identified in 12 miners; 4 of 9 were classified as category 0/0 CWP; 2 of 5, 0/1 CWP; 5 of 6, 1/0 CWP; and 1 of 1, 2/1 CWP by chest radiograph. Focal emphysema was identified by HRCT in 7 miners; 4 of 9 were classified as 0/0 CWP; 2 of 5, 0/1 CWP; and 1 of 6, 1/0 CWP by standard chest radiography. Four miners with definite nodules confirmed by HRCT had focal emphysema, while three without nodules had focal emphysema. Pulmonary function testing was not different between miners with or without CWP by standard chest radiography, nor was it different between miners with or without definite nodules evidenced by HRCT. No difference in resting oxygenation was found between any group of miners. The presence of focal emphysema confirmed by HRCT did not significantly affect pulmonary function tests on resting arterial blood gas values. There was, however, a significantly lower FEV1 and mean forced expiratory flow during the middle half of forced vital capacity with lifetime nonsmoking miners. The presence of CWP on chest radiography was significantly correlated with smoking cigarettes but not the years of mining. The presence of nodules on HRCT approached a significant correlation with cigarette smoking, but focal emphysema did not. For detecting evidence of coal dust accumulation in lung parenchyma and identifying focal emphysema, HRCT was more sensitive than standard chest radiography. However, despite earlier detection of parenchymal abnormalities, abnormal pulmonary function attributable to coal dust could not be identified.

  3. Four-dimensional CT scans for treatment planning in stereotactic radiotherapy for stage I lung cancer

    SciTech Connect

    Underberg, Rene; Lagerwaard, Frank J. . E-mail: fj.lagerwaard@vumc.nl; Cuijpers, Johan P.; Slotman, Ben J.; van Soernsen de Koste, John R.; Senan, Suresh

    2004-11-15

    Purpose: Hypofractionated stereotactic radiotherapy (SRT) for Stage I non-small-cell lung cancer requires that meticulous attention be paid toward ensuring optimal target definition. Two computed tomography (CT) scan techniques for defining internal target volumes (ITV) were evaluated. Methods and materials: Ten consecutive patients treated with SRT underwent six 'standard' rapid multislice CT scans to generate an ITV{sub 6CT} and one four-dimensional CT (4DCT) scan that generated volumetric datasets for 10 phases of the respiratory cycle, all of which were used to generate an ITV{sub 4DCT}. Geometric and dosimetric analyses were performed for (1) PTV{sub 4DCT}, derived from the ITV{sub 4DCT} with the addition of a 3-mm margin; (2) PTV{sub 6CT}, derived from the ITV{sub 6CT} with the addition of a 3-mm margin; and (3) 6 PTV{sub 10mm}, derived from each separate GTV{sub 6CT}, to which a three-dimensional margin of 10 mm was added. Results: The ITV{sub 4DCT} was not significantly different from the ITV{sub 6CT} in 8 patients, but was considerably larger in 2 patients whose tumors exhibited the greatest mobility. On average, the ITV{sub 6CT} missed on average 22% of the volume encompassing both ITVs, in contrast to a corresponding mean value of only 8.3% for ITV{sub 4DCT}. Plans based on PTV{sub 4DCT} resulted in coverage of the PTV{sub 6CT} by the 80% isodose in all patients. However, plans based on use of PTV{sub 6CT} led to a mean PTV{sub 4DCT} coverage of only 92.5%, with a minimum of 77.7% and 77.5% for the two most mobile tumors. PTVs derived from a single multislice CT expanded with a margin of 10 mm were on average twice the size of PTVs derived using the other methods, but still led to an underdosing in the two most mobile tumors. Conclusions: Individualized ITVs can improve target definition for SRT of Stage I non-small-cell lung cancer, and use of only a single CT scan with a 10-mm margin is inappropriate. A single 4D scan generates comparable or larger

  4. Co-registration of isotope bone scan with CT scan and MRI in the investigation of spinal pathology.

    PubMed

    Brazenor, Graeme A; Malham, Gregory M; Ballok, Zita E

    2014-09-01

    Image fusion software enables technetium(99m)-methylene diphosphonate (Tc(99m)-MDP) bone scan images to be co-registered with CT scan or MRI, allowing greater anatomical discrimination. We examined the role of bone scan images co-registered with CT scan or MRI in the investigation of patients presenting with axial spinal pain and/or limb pain. One hundred and thirty-nine consecutive patients were examined, and thereafter investigated with CT scan, MRI, and/or dynamic plain films. At this point diagnosis (pathology type and anatomical site) and treatment intention were declared. The co-registered Tc(99m)-MDP bone scan images were then studied, after which diagnosis (pathology type and anatomical site) and treatment intention were re-declared. This data were then analysed to determine whether the addition of co-registered bone scan images resulted in any change in diagnosis or treatment intention. The most significant change in diagnosis was pathology type (10%). Anatomical site changed markedly without overlap of the pre and post-isotope fields in 5%, and with overlap in 10%. Treatment intention had a major change in 3.6% and minor change in 8.6%. In the two groups where there was (i) no obvious pathology after full pre-isotope investigation, or (ii) a spinal fusion under suspicion, addition of the bone scan information led to a major change in the pathology and/or anatomical localisation in 18% and 19%, respectively. The addition of co-registered Tc(99m)-MDP bone scan images offers significant diagnostic assistance, particularly in the difficult diagnostic groups where a failed spinal fusion may be the suspected pain generator, or when no pain generator can otherwise be found. PMID:24798908

  5. Optically investigating Nd3+-Yb3+ cascade sensitized upconversion nanoparticles for high resolution, rapid scanning, deep and damage-free bio-imaging

    PubMed Central

    Zhao, Yuxiang; Zhan, Qiuqiang; Liu, Jing; He, Sailing

    2015-01-01

    The rapid development of upconversion nanoparticles (UCNPs) has been facing with a great challenge: intense emission, fast scanning, and deep imaging require high-power light irradiation with minimized heating effect (the intrinsic 975-nm excitation of Yb3+-sensitized UCNPs have overheating problem). By shifting the excitation peak from 975 nm to 795 nm, Nd3+-Yb3+ cascade sensitized upconversion nanoparticles (Nd-UCNPs) with minimized heating effect were reported as the new generation UCNPs. For the first time, within two optically modeled applications in vitro and in vivo, the damage outcomes under long time high power laser excitation were solidly calculated, complementing the damage-free study of Nd-UCNPs. The higher resolution (20% improvement) and five times faster scanning microscopy were successfully performed using Nd-UCNPs under safety laser power level. The computational results showed the Nd3+-Yb3+ energy transfer efficiency would not compromise the deep imaging ability, and the red (650-nm) emission is worth to be enhanced for deep tissue imaging. PMID:25798308

  6. Electron beam lithographically-defined scanning electrochemical-atomic force microscopy probes: fabrication method and application to high resolution imaging on heterogeneously active surfaces.

    PubMed

    Dobson, Phillip S; Weaver, John M R; Burt, David P; Holder, Mark N; Wilson, Neil R; Unwin, Patrick R; Macpherson, Julie V

    2006-09-01

    This paper describes in detail the use of electron beam lithography (EBL) to successfully batch microfabricate combined scanning electrochemical-atomic force microscopy (SECM-AFM) probes. At present, the process produces sixty probes at a time, on a 1/4 of a three-inch wafer. Using EBL, gold triangular-shaped electrodes can be defined at the tip apex, with plasma enhanced chemical vapor deposited silicon nitride serving as an effective insulating layer, at a thickness of 75 nm. The key features of the fabrication technique and the critical steps are discussed. The capability of these probes for SECM-AFM imaging in both tapping and constant distance mode is illustrated with dual topographical-electrochemical scans over an array of closely-spaced 1 microm diameter Pt disc electrodes, held at a suitable potential to generate an electroactive species at a transport-limited rate. As highlighted herein, understanding diffusion to heterogeneous electrode surfaces, including array electrodes, is currently topical and we present preliminary data highlighting the use of SECM-AFM as a valuable tool for the investigation of diffusion and reactivity at high spatial resolution. PMID:19817052

  7. MTF characterization in 2D and 3D for a high resolution, large field of view flat panel imager for cone beam CT

    NASA Astrophysics Data System (ADS)

    Shah, Jainil; Mann, Steve D.; Tornai, Martin P.; Richmond, Michelle; Zentai, George

    2014-03-01

    The 2D and 3D modulation transfer functions (MTFs) of a custom made, large 40x30cm2 area, 600- micron CsI-TFT based flat panel imager having 127-micron pixellation, along with the micro-fiber scintillator structure, were characterized in detail using various techniques. The larger area detector yields a reconstructed FOV of 25cm diameter with an 80cm SID in CT mode. The MTFs were determined with 1x1 (intrinsic) binning. The 2D MTFs were determined using a 50.8 micron tungsten wire and a solid lead edge, and the 3D MTF was measured using a custom made phantom consisting of three nearly orthogonal 50.8 micron tungsten wires suspended in an acrylic cubic frame. The 2D projection data was reconstructed using an iterative OSC algorithm using 16 subsets and 5 iterations. As additional verification of the resolution, along with scatter, the Catphan® phantom was also imaged and reconstructed with identical parameters. The measured 2D MTF was ~4% using the wire technique and ~1% using the edge technique at the 3.94 lp/mm Nyquist cut-off frequency. The average 3D MTF measured along the wires was ~8% at the Nyquist. At 50% MTF, the resolutions were 1.2 and 2.1 lp/mm in 2D and 3D, respectively. In the Catphan® phantom, the 1.7 lp/mm bars were easily observed. Lastly, the 3D MTF measured on the three wires has an observed 5.9% RMSD, indicating that the resolution of the imaging system is uniform and spatially independent. This high performance detector is integrated into a dedicated breast SPECT-CT imaging system.

  8. Oxidation products of the niobium tungsten oxide Nb{sub 4}W{sub 13}O{sub 47}: A high-resolution scanning transmission electron microscopy study

    SciTech Connect

    Krumeich, Frank . E-mail: krumeich@inorg.chem.ethz.ch; Nesper, Reinhard

    2006-06-15

    Nb{sub 4}W{sub 13}O{sub 47}, a member of the solid solution series Nb{sub 8-n}W{sub 9+n}O{sub 47} (0=scanning transmission electron microscopy applying a high-angle annular dark field detector. At the selected imaging conditions (Z contrast), not only the metal positions are revealed by this technique but valuable additional information about the elemental distribution can be obtained simultaneously.

  9. Production of a high-resolution spot for ellipsometric scanning immunology using an off-the-shelf light-emitting diode

    NASA Astrophysics Data System (ADS)

    Tobin, Stephen M.; Yang, Shao

    2000-10-01

    A modified ellipsometric optical system has been designed for an in-vitro medical diagnostic instrument using an off- the-shelf 525-nm LED source. System requirements included a 20 degree (+/- 1 deg) incident angle, 1 uW (min) assay surface incident power, 300 um (max) incident spot diameter (full spatial extent) and 500:1 (min) detector S/N in normal room light. The fixed polarization ellipsometric optical analysis method is discussed, and the lens prescription used in a prototype instrument is given. Zemas spot size analyses are given, as well as a theoretical model for S/N assessment. Incident spot size and optical power data are provided which agree with the theory presented. Finally, the application of results and typical scanned signal output are discussed.

  10. High resolution data acquisition

    DOEpatents

    Thornton, Glenn W.; Fuller, Kenneth R.

    1993-01-01

    A high resolution event interval timing system measures short time intervals such as occur in high energy physics or laser ranging. Timing is provided from a clock (38) pulse train (37) and analog circuitry (44) for generating a triangular wave (46) synchronously with the pulse train (37). The triangular wave (46) has an amplitude and slope functionally related to the time elapsed during each clock pulse in the train. A converter (18, 32) forms a first digital value of the amplitude and slope of the triangle wave at the start of the event interval and a second digital value of the amplitude and slope of the triangle wave at the end of the event interval. A counter (26) counts the clock pulse train (37) during the interval to form a gross event interval time. A computer (52) then combines the gross event interval time and the first and second digital values to output a high resolution value for the event interval.

  11. High resolution data acquisition

    DOEpatents

    Thornton, G.W.; Fuller, K.R.

    1993-04-06

    A high resolution event interval timing system measures short time intervals such as occur in high energy physics or laser ranging. Timing is provided from a clock, pulse train, and analog circuitry for generating a triangular wave synchronously with the pulse train (as seen in diagram on patent). The triangular wave has an amplitude and slope functionally related to the time elapsed during each clock pulse in the train. A converter forms a first digital value of the amplitude and slope of the triangle wave at the start of the event interval and a second digital value of the amplitude and slope of the triangle wave at the end of the event interval. A counter counts the clock pulse train during the interval to form a gross event interval time. A computer then combines the gross event interval time and the first and second digital values to output a high resolution value for the event interval.

  12. The role of PET/CT scanning in radiotherapy planning.

    PubMed

    Jarritt, P H; Carson, K J; Hounsell, A R; Visvikis, D

    2006-09-01

    The introduction of functional data into the radiotherapy treatment planning process is currently the focus of significant commercial, technical, scientific and clinical development. The potential of such data from positron emission tomography (PET) was recognized at an early stage and was integrated into the radiotherapy treatment planning process through the use of image fusion software. The combination of PET and CT in a single system (PET/CT) to form an inherently fused anatomical and functional dataset has provided an imaging modality which could be used as the prime tool in the delineation of tumour volumes and the preparation of patient treatment plans, especially when integrated with virtual simulation. PET imaging typically using 18F-Fluorodeoxyglucose (18F-FDG) can provide data on metabolically active tumour volumes. These functional data have the potential to modify treatment volumes and to guide treatment delivery to cells with particular metabolic characteristics. This paper reviews the current status of the integration of PET and PET/CT data into the radiotherapy treatment process. Consideration is given to the requirements of PET/CT data acquisition with reference to patient positioning aids and the limitations imposed by the PET/CT system. It also reviews the approaches being taken to the definition of functional/tumour volumes and the mechanisms available to measure and include physiological motion into the imaging process. The use of PET data must be based upon a clear understanding of the interpretation and limitations of the functional signal. Protocols for the implementation of this development remain to be defined, and outcomes data based upon clinical trials are still awaited. PMID:16980683

  13. Ultra high resolution tomography

    SciTech Connect

    Haddad, W.S.

    1994-11-15

    Recent work and results on ultra high resolution three dimensional imaging with soft x-rays will be presented. This work is aimed at determining microscopic three dimensional structure of biological and material specimens. Three dimensional reconstructed images of a microscopic test object will be presented; the reconstruction has a resolution on the order of 1000 A in all three dimensions. Preliminary work with biological samples will also be shown, and the experimental and numerical methods used will be discussed.

  14. High-Resolution Autoradiography

    NASA Technical Reports Server (NTRS)

    Towe, George C; Gomberg, Henry J; Freemen, J W

    1955-01-01

    This investigation was made to adapt wet-process autoradiography to metallurgical samples to obtain high resolution of segregated radioactive elements in microstructures. Results are confined to development of the technique, which was perfected to a resolution of less than 10 microns. The radioactive samples included carbon-14 carburized iron and steel, nickel-63 electroplated samples, a powder product containing nickel-63, and tungsten-185 in N-155 alloy.

  15. Head CT scan in Iranian minor head injury patients: evaluating current decision rules.

    PubMed

    Sadegh, Robab; Karimialavijeh, Ehsan; Shirani, Farzaneh; Payandemehr, Pooya; Bahramimotlagh, Hooman; Ramezani, Mahtab

    2016-02-01

    The objective of this study is to select one of the seven available clinical decision rules for minor head injury, for managing Iranian patients. This was a prospective cohort study evaluating medium- or high-risk minor head injury patients presenting to the Emergency Department. Patients with minor head trauma who were eligible for brain imaging based on seven available clinical decision rules (National Institute for Health and Clinical Excellence (NICE), National Emergency X-Radiography Utilization Study (NEXUS)-II, Neurotraumatology Committee of the World Federation of Neurosurgical Societies (NCWFNS), New Orleans, American College of Emergency Physicians (ACEP) Guideline, Scandinavian, and Canadian computed tomography (CT) head rule) were selected. Subjects were underwent a non-contrast axial spiral head CT scan. The outcome was defined as abnormal and normal head CT scan. Univariate analysis and stepwise linear regression were applied to show the best combination of risk factors for detecting CT scan abnormalities. Five hundred patients with minor head trauma were underwent brain CT scan. The following criteria were derived by stepwise linear regression: Glasgow Coma Scale (GCS) less than 15, confusion, signs of basal skull fracture, drug history of warfarin, vomiting more than once, loss of consciousness, focal neurologic deficit, and age over 65 years. This model has 86.15 % (75.33-93.45 %) sensitivity and 46.44 % (46.67-51.25 %) specificity in detecting minor head injury patients with CT scan abnormalities (95 % confidence interval). Of seven decision rules, only the Canadian CT Head Rule possesses seven of the eight high-risk factors associated with abnormal head CT results which were identified by this study. This study underlines the Canadian CT Head Rule's utility in Iranian minor head injury patients. Our study encourages researchers to evaluate available guidelines in different communities. PMID:26407978

  16. Computer-aided analysis of airway trees in micro-CT scans of ex vivo porcine lung tissue.

    PubMed

    Bauer, Christian; Adam, Ryan; Stoltz, David A; Beichel, Reinhard R

    2012-12-01

    We present a highly automated approach to obtain detailed structural models of airway trees from ex vivo porcine lung tissue imaged with a high resolution micro-CT scanner. Such information is an important prerequisite to systematically study models of lung disease that affect airway morphology. The method initially identifies all tubular airway-like structures in the lung. In a second processing step, these structures are grouped into a connected airway tree by utilizing prior knowledge about the airway trees branching pattern. The method was evaluated on 12 micro-CT scans from four tracheal lobes of piglets imaged at three different inflation levels. For this study, two control piglets and two cystic fibrosis piglets were used. For systematic validation of our approach, an airway nomenclature was developed for the pig airway tree. Out of more than 3500 airway tree segments assessed during evaluation, 88.45% were correctly identified by the method. No false positive airway branches were found. A detailed performance analysis for different airway tree hierarchy levels, lung inflation levels and piglets with/without cystic fibrosis is presented in the paper. PMID:22959430

  17. Predictors of Positive Head CT Scan and Neurosurgical Procedures After Minor Head Trauma

    PubMed Central

    Kisat, Mehreen; Zafar, Syed Nabeel; Latif, Asad; Villegas, Cassandra V.; Efron, David T.; Stevens, Kent A.; Haut, Elliott R; Schneider, Eric B.; Zafar, Hasnain; Haider, Adil H.

    2012-01-01

    Background There continues to be an ongoing debate regarding the utility of Head CT scans in patients with a normal Glasgow Coma Scale (GCS) after minor head injury. The objective of this study is to determine patient and injury characteristics that predict a positive head CT scan or need for a Neurosurgical Procedure (NSP) among patients with blunt head injury and a normal GCS. Materials and Methods Retrospective analysis of adult patients in the National Trauma Data Bank who presented to the ED with a history of blunt head injury and a normal GCS of 15. The primary outcomes were a positive head CT scan or a NSP. Multivariate logistic regression controlling for patient and injury characteristics was used to determine predictors of each outcome. Results Out of a total of 83,566 patients, 24,414 (29.2%) had a positive head CT scan and 3,476 (4.2%) underwent a NSP. Older patients and patients with a history of fall (as compared to a motor vehicle crash) were more likely to have a positive finding on a head CT scan. Male patients, African-Americans (as compared to Caucasians) and those who presented with a fall were more likely to have a NSP. Conclusions Older age, male gender, ethnicity and mechanism of injury are significant predictors of a positive finding on head CT scans and the need for neurosurgical procedures. This study highlights patient and injury specific characteristics that may help in identifying patients with supposedly minor head injury who will benefit from a head CT scan. PMID:21872271

  18. Compact high-resolution gamma-ray computed tomography system for multiphase flow studies

    SciTech Connect

    Bieberle, A.; Nehring, H.; Berger, R.; Arlit, M.; Haerting, H.-U.; Schubert, M.; Hampel, U.

    2013-03-15

    In this paper, a compact high-resolution gamma-ray Computed Tomography (CompaCT) measurement system for multiphase flow studies and tomographic imaging of technical objects is presented. Its compact and robust design makes it particularly suitable for studies on industrial facilities and outdoor applications. Special care has been given to thermal ruggedness, shock resistance, and radiation protection. Main components of the system are a collimated {sup 137}Cs isotopic source, a thermally stabilised modular high-resolution gamma-ray detector arc with 112 scintillation detector elements, and a transportable rotary unit. The CompaCT allows full CT scans of objects with a diameter of up to 130 mm and can be operated with any tilting angle from 0 Degree-Sign (horizontal) to 90 Degree-Sign (vertical).

  19. Compact high-resolution gamma-ray computed tomography system for multiphase flow studies

    NASA Astrophysics Data System (ADS)

    Bieberle, A.; Nehring, H.; Berger, R.; Arlit, M.; Härting, H.-U.; Schubert, M.; Hampel, U.

    2013-03-01

    In this paper, a compact high-resolution gamma-ray Computed Tomography (CompaCT) measurement system for multiphase flow studies and tomographic imaging of technical objects is presented. Its compact and robust design makes it particularly suitable for studies on industrial facilities and outdoor applications. Special care has been given to thermal ruggedness, shock resistance, and radiation protection. Main components of the system are a collimated 137Cs isotopic source, a thermally stabilised modular high-resolution gamma-ray detector arc with 112 scintillation detector elements, and a transportable rotary unit. The CompaCT allows full CT scans of objects with a diameter of up to 130 mm and can be operated with any tilting angle from 0° (horizontal) to 90° (vertical).

  20. Compact high-resolution gamma-ray computed tomography system for multiphase flow studies.

    PubMed

    Bieberle, A; Nehring, H; Berger, R; Arlit, M; Härting, H-U; Schubert, M; Hampel, U

    2013-03-01

    In this paper, a compact high-resolution gamma-ray Computed Tomography (CompaCT) measurement system for multiphase flow studies and tomographic imaging of technical objects is presented. Its compact and robust design makes it particularly suitable for studies on industrial facilities and outdoor applications. Special care has been given to thermal ruggedness, shock resistance, and radiation protection. Main components of the system are a collimated (137)Cs isotopic source, a thermally stabilised modular high-resolution gamma-ray detector arc with 112 scintillation detector elements, and a transportable rotary unit. The CompaCT allows full CT scans of objects with a diameter of up to 130 mm and can be operated with any tilting angle from 0° (horizontal) to 90° (vertical). PMID:23556806

  1. Design and performance of a combined secondary ion mass spectrometry-scanning probe microscopy instrument for high sensitivity and high-resolution elemental three-dimensional analysis

    SciTech Connect

    Wirtz, Tom; Fleming, Yves; Gerard, Mathieu; Gysin, Urs; Glatzel, Thilo; Meyer, Ernst; Wegmann, Urs; Maier, Urs; Odriozola, Aitziber Herrero; Uehli, Daniel

    2012-06-15

    State-of-the-art secondary ion mass spectrometry (SIMS) instruments allow producing 3D chemical mappings with excellent sensitivity and spatial resolution. Several important artifacts however arise from the fact that SIMS 3D mapping does not take into account the surface topography of the sample. In order to correct these artifacts, we have integrated a specially developed scanning probe microscopy (SPM) system into a commercial Cameca NanoSIMS 50 instrument. This new SPM module, which was designed as a DN200CF flange-mounted bolt-on accessory, includes a new high-precision sample stage, a scanner with a range of 100 {mu}m in x and y direction, and a dedicated SPM head which can be operated in the atomic force microscopy (AFM) and Kelvin probe force microscopy modes. Topographical information gained from AFM measurements taken before, during, and after SIMS analysis as well as the SIMS data are automatically compiled into an accurate 3D reconstruction using the software program 'SARINA,' which was developed for this first combined SIMS-SPM instrument. The achievable lateral resolutions are 6 nm in the SPM mode and 45 nm in the SIMS mode. Elemental 3D images obtained with our integrated SIMS-SPM instrument on Al/Cu and polystyrene/poly(methyl methacrylate) samples demonstrate the advantages of the combined SIMS-SPM approach.

  2. High-resolution 1050 nm spectral domain retinal optical coherence tomography at 120 kHz A-scan rate with 6.1 mm imaging depth

    PubMed Central

    An, Lin; Li, Peng; Lan, Gongpu; Malchow, Doug; Wang, Ruikang K.

    2013-01-01

    We report a newly developed high speed 1050nm spectral domain optical coherence tomography (SD-OCT) system for imaging posterior segment of human eye. The system is capable of an axial resolution at ~10 µm in air, an imaging depth of 6.1 mm in air, a system sensitivity fall-off at ~6 dB/3mm and an imaging speed of 120,000 A-scans per second. We experimentally demonstrate the system’s capability to perform phase-resolved imaging of dynamic blood flow within retina, indicating high phase stability of the SDOCT system. Finally, we show an example that uses this newly developed system to image posterior segment of human eye with a large view of view (10 × 9 mm2), providing detailed visualization of microstructural features from anterior retina to posterior choroid. The demonstrated system parameters and imaging performances are comparable to those that a typical 1 µm swept source OCT would deliver for retinal imaging. PMID:23411636

  3. Anatomy and growth pattern of Amazon deep-sea fan as revealed by long-range side-scan sonar (GLORIA) and high-resolution seismic studies

    SciTech Connect

    Damuth, J.E.; Flood, R.D.; Kowsmann, R.O.; Belderson, R.H.; Gorini, M.A.

    1988-08-01

    Imaging of the Amazon deep-sea fan with long-range side-scan sonar (GLORIA) has, for the first time, revealed the anatomy, trends, and growth pattern of distributary channels on this fan. Only one channel-levee system was active at any given time and extended from the Amazon Submarine Canyon downslope onto the lower fan (> 4,200 m). Formation of new channel-levee systems occurred when a currently active channel-levee system was cut off and abandoned through avulsion, and a new channel-levee system was established nearby. Through time, successive channel-levee formation and abandonment built two broad levee complexes consisting of groups of overlapping, coalescing segments of channel-levee systems across the present fan surface. These, plus older, now buried levee complexes, indicate that fan growth is radially outward and downslope through development of successive levee complexes. The most striking characteristic of the distributary channels is their intricate, often recurving, meanders with sinuosities of up to 2.5. Cutoffs and abandoned meander loops indicate that the channels migrate laterally through time. Channel bifurcation results predominantly from avulsion when flows breach a channel levee, thereby abandoning the present channel and establishing a new channel-levee segment nearby. No clear evidence of channel branching (i.e., division of a single channel into two active segments) or braiding was observed. 22 figs.

  4. CT of multiple sclerosis: reassessment of delayed scanning with high doses of contrast material

    SciTech Connect

    Spiegel, S.M.; Vinuela, F.; Fox, A.J.; Pelz, D.M.

    1985-09-01

    A prospective study involving 87 patients was carried out to evaluate the necessity for a high dose of contrast material in addition to delayed computed tomographic (CT) scanning for optimal detection of the lesions of multiple sclerosis in the brain. In patients with either clinically definite multiple sclerosis or laboratory-supported definite multiple sclerosis, CT scans were obtained with a uniform protocol. Lesions consistent with multiple sclerosis were demonstrated on the second scan in 54 patients. In 36 of these 54 patients, the high-dose delayed scan added information. These results are quite similar to those of a previous study from this institution using different patients, in whom the second scan was obtained immediately after the bolus injection of contrast material containing 40 g of organically bound iodine. The lack of real difference in the results of the two studies indicate that the increased dose, not just the delay in scanning, is necessary for a proper study.

  5. Application of offset-CT scanning to the inspection of high power feeder lines and connections

    NASA Astrophysics Data System (ADS)

    Schneberk, Daniel; Maziuk, Robert; Soyfer, Boris; Shashishekhar, N.; Alreja, Rahul

    2016-02-01

    VJT is developing techniques and scanning methods for the in-situ Radiographic and Computed Tomographic inspection of underground high-power feeder cables. The goals for the inspection are to measure the 3D state of the cables and the cable-connections. Recent in-situ Digital Radiographic inspections performed by VJT have demonstrated the value of NDE inspection information for buried power lines. These NDE data have raised further questions as to the exact state of the cables and connections and pointed to the need for more 3D information of the type provided by volumetric CT scanning. VJT is pursuing a three phased approach to address the many issues involved in this type of inspection: 1) develop a high-power feeder-cable test-bed CT scanner, 2) acquire scans on underground feeder pipes that have been removed from service, and 3) from the work in 1) and 2) develop limited-angle CT scanning methods for extending in-situ Digital Radiography to volumetric CT measurements. To this end, VJT has developed and fielded a high-energy test-bed Gantry-type CT scanner (the source and detector move around the object) with a number of important properties. First, the geometry of the gantry-scans can be configured to match the techniques used in the in-situ radiographic inspection. The same X-ray source is employed as in portable Radiographic inspections, a 7.5 MeV Betatron coupled to a Perkin-Elmer Amorphous Silicon detector. Offset-CT scanning is employed as the high-power feeder line assembly is larger than the detector. A description of this scanner and the scan geometry will be presented showing the connection to in-situ radiography. Results from the CT scans of high-power feeder-cable specimens removed from service will be presented with a focus on the inspection potential of volumetric CT data on these assemblies. An evaluation of the scan performance properties of these data compared to the spectrum of life-cycle inspection issues will be presented. Continuing and

  6. Scan-rescan reproducibility of CT densitometric measures of emphysema

    NASA Astrophysics Data System (ADS)

    Chong, D.; van Rikxoort, E. M.; Kim, H. J.; Goldin, J. G.; Brown, M. S.

    2011-03-01

    This study investigated the reproducibility of HRCT densitometric measures of emphysema in patients scanned twice one week apart. 24 emphysema patients from a multicenter study were scanned at full inspiration (TLC) and expiration (RV), then again a week later for four scans total. Scans for each patient used the same scanner and protocol, except for tube current in three patients. Lung segmentation with gross airway removal was performed on the scans. Volume, weight, mean lung density (MLD), relative area under -950HU (RA-950), and 15th percentile (PD-15) were calculated for TLC, and volume and an airtrapping mask (RA-air) between -950 and -850HU for RV. For each measure, absolute differences were computed for each scan pair, and linear regression was performed against volume difference in a subgroup with volume difference <500mL. Two TLC scan pairs were excluded due to segmentation failure. The mean lung volumes were 5802 +/- 1420mL for TLC, 3878 +/- 1077mL for RV. The mean absolute differences were 169mL for TLC volume, 316mL for RV volume, 14.5g for weight, 5.0HU for MLD, 0.66p.p. for RA-950, 2.4HU for PD-15, and 3.1p.p. for RA-air. The <500mL subgroup had 20 scan pairs for TLC and RV. The R2 values were 0.8 for weight, 0.60 for MLD, 0.29 for RA-950, 0.31 for PD-15, and 0.64 for RA-air. Our results indicate that considerable variability exists in densitometric measures over one week that cannot be attributed to breathhold or physiology. This has implications for clinical trials relying on these measures to assess emphysema treatment efficacy.

  7. Investigation of ultra low-dose scans in the context of quantum-counting clinical CT

    NASA Astrophysics Data System (ADS)

    Weidinger, T.; Buzug, T. M.; Flohr, T.; Fung, G. S. K.; Kappler, S.; Stierstorfer, K.; Tsui, B. M. W.

    2012-03-01

    In clinical computed tomography (CT), images from patient examinations taken with conventional scanners exhibit noise characteristics governed by electronics noise, when scanning strongly attenuating obese patients or with an ultra-low X-ray dose. Unlike CT systems based on energy integrating detectors, a system with a quantum counting detector does not suffer from this drawback. Instead, the noise from the electronics mainly affects the spectral resolution of these detectors. Therefore, it does not contribute to the image noise in spectrally non-resolved CT images. This promises improved image quality due to image noise reduction in scans obtained from clinical CT examinations with lowest X-ray tube currents or obese patients. To quantify the benefits of quantum counting detectors in clinical CT we have carried out an extensive simulation study of the complete scanning and reconstruction process for both kinds of detectors. The simulation chain encompasses modeling of the X-ray source, beam attenuation in the patient, and calculation of the detector response. Moreover, in each case the subsequent image preprocessing and reconstruction is modeled as well. The simulation-based, theoretical evaluation is validated by experiments with a novel prototype quantum counting system and a Siemens Definition Flash scanner with a conventional energy integrating CT detector. We demonstrate and quantify the improvement from image noise reduction achievable with quantum counting techniques in CT examinations with ultra-low X-ray dose and strong attenuation.

  8. Answers to Common Questions About the Use and Safety of CT Scans.

    PubMed

    McCollough, Cynthia H; Bushberg, Jerrold T; Fletcher, Joel G; Eckel, Laurence J

    2015-10-01

    Articles in the scientific literature and lay press over the past several years have implied that computed tomography (CT) may cause cancer and that physicians and patients must exercise caution in its use. Although there is broad agreement on the latter point--unnecessary medical tests of any type should always be avoided--there is considerable controversy surrounding the question of whether, or to what extent, CT scans can lead to future cancers. Although the doses used in CT are higher than those used in conventional radiographic examinations, they are still 10 to 100 times lower than the dose levels that have been reported to increase the risk of cancer. Despite the fact that at the low doses associated with a CT scan the risk either is too low to be convincingly demonstrated or does not exist, the magnitude of the concern among patients and some medical professionals that CT scans increase cancer risk remains unreasonably high. In this article, common questions about CT scanning and radiation are answered to provide physicians with accurate information on which to base their medical decisions and respond to patient questions. PMID:26434964

  9. Motion artifacts in CT scans: a study by computer simulation and mechanical phantom

    NASA Astrophysics Data System (ADS)

    Tien, Der-Chi; Lung, Jen-Kuang; Liao, Chih-Yu; Yong, Tung-Che; Hsu, Chung-Hsien; Liao, Chih-Chiang; Wu, Ren-Hong; Tseng, Kuo-Hsiung; Tsung, Tsing-Tshih

    2008-11-01

    Computed tomography (CT) is one of the most important tools in the diagnosis of thoracic tumors. However, during the scanning process, respiratory motion causes changes in the position and shape of the tumor, creating motion artifacts in the CT scan. This can lead to misdiagnosis of the size and position of the tumor, and can affect the effectiveness of treatment. This study develops a computer model of the movement of the thorax, and simulates the movement of a lung tumor caused by breathing during a CT scan. We show that adjusting the CT slice thickness is sufficient to determine the center of displacement and maximum displacement of a tumor during normal breathing. This model can be applied in the clinical diagnostic use of CT equipment. It will assist in finding the position of lung tumors from motion artifacts in CT scans. The target margin for treatment can thus be defined more accurately, so that appropriate doses of radiation can be applied to the target area, and irradiation of healthy tissue avoided.

  10. Profile of CT scan output dose in axial and helical modes using convolution

    NASA Astrophysics Data System (ADS)

    Anam, C.; Haryanto, F.; Widita, R.; Arif, I.; Dougherty, G.

    2016-03-01

    The profile of the CT scan output dose is crucial for establishing the patient dose profile. The purpose of this study is to investigate the profile of the CT scan output dose in both axial and helical modes using convolution. A single scan output dose profile (SSDP) in the center of a head phantom was measured using a solid-state detector. The multiple scan output dose profile (MSDP) in the axial mode was calculated using convolution between SSDP and delta function, whereas for the helical mode MSDP was calculated using convolution between SSDP and the rectangular function. MSDPs were calculated for a number of scans (5, 10, 15, 20 and 25). The multiple scan average dose (MSAD) for differing numbers of scans was compared to the value of CT dose index (CTDI). Finally, the edge values of MSDP for every scan number were compared to the corresponding MSAD values. MSDPs were successfully generated by using convolution between a SSDP and the appropriate function. We found that CTDI only accurately estimates MSAD when the number of scans was more than 10. We also found that the edge values of the profiles were 42% to 93% lower than that the corresponding MSADs.

  11. Impact of low-dose CT scan in dual timepoint investigations: a phantom study

    NASA Astrophysics Data System (ADS)

    Micheelsen, M. A.; Jensen, M.

    2011-09-01

    Dual timepoint FDG takeup investigations have a potential for separating malignant lymph nodes from non-malignant in certain cases of suspected lung cancer. One hour seems to be the optimal time interval between the two scans (50-120 min). Many of the new PET scanners benefit from image fusion with a CT image and also use the CT for attenuation correction. In any practical hospital setting, 1 hour is too long to occupy the scanner bed and a second CT procedure thus becomes necessary. This study tries to validate to what extent the dose/quality of the second CT scan can be lowered, without compromising attenuation correction, lesion detection and quantification. Using a standard NEMA phantom with the GE Discovery PET/CT scanner, taken in and out between scan sessions, we have tried to find the minimal CT dose necessary for the second scan while still reaching tissue activity quantification within predetermined error limits. For a hot sphere to background activity concentration ratio of 1:5, the average uptake (normalised by the time corrected input activity concentration) in a sphere of 6 cm3 was found to be 0.90 ± 0.08 for the standard scan, yielding a dose of 5.5 mGy, and 0.90 ± 0.14 for a scan with lowest possible mAs product and lowest possible kV, yielding a dose of 0.65 mGy. With an insignificant increase in the uncertainty in the uptake measurement, we can get an order of magnitude reduction for the CT dose.

  12. High resolution infrared measurements

    NASA Technical Reports Server (NTRS)

    Kessler, B.; Cawley, Robert

    1990-01-01

    Sample ground based cloud radiance data from a high resolution infrared sensor are shown and the sensor characteristics are presented in detail. The purpose of the Infrared Analysis Measurement and Modeling Program (IRAMMP) is to establish a deterministic radiometric data base of cloud, sea, and littoral terrain clutter to be used to advance the design and development of Infrared Search and Track (IRST) systems as well as other infrared devices. The sensor is a dual band radiometric sensor and its description, together with that of the Data Acquisition System (DAS), are given. A schematic diagram of the sensor optics is shown.

  13. Feasibility of iodine contrast enhanced CT-scan during a 18F-fluorodeoxyglucose Positron Emission Tomography

    NASA Astrophysics Data System (ADS)

    Houzard, C.; Tychyj, C.; Morelec, I.; Ricard, F.; Got, P.; Cotton, F.; Giammarile, F.; Maintas, D.

    2009-06-01

    OBJECTIVE: this prospective study evaluates the feasibility in current clinical practice of contrast enhanced CT-scan for diagnosis purpose, performed during 18FDG PET-CT study with a PET/CT tomography. METHOD: 25 patients underwent FDG imaging for lymphoma staging. The PET scan was done immediately after the usual low dose CT (lCT). A second CT scan was consequently acquired, by using classical diagnosis CT parameters (dCT) and iodinated contrast. For each patient, all CT attenuation correction (CTAC) PET images were visually compared. Density in Hounsfield units (HU) and maximum Standardized Uptake Value (SUVmax) were then measured on different organs and up to 5 specific lymphoma localizations (total of 294 measurements). RESULTS: Visual analysis was similar for the 2 modalities, without discordant interpretation for the pathologic sites. SUVmax means and standard deviation of each organ for lCTAC and dCTAC were comparable. The equation of the fitted multiple linear regression model was: dCT=0.0748191 + 1.17024*lCT (98.71%; p < 0.01). CONCLUSION: These first results allow the use of injected CT scan, before the PET scan acquisition for lymphoma staging with this PET-CT scan, not affected by the height atomic number and elevated density. A great benefit is therefore obtained on diagnostic, logistic and radioprotection purposes.

  14. A CCD-based optical CT scanner for high-resolution 3D imaging of radiation dose distributions: equipment specifications, optical simulations and preliminary results

    NASA Astrophysics Data System (ADS)

    Doran, Simon J.; Klein Koerkamp, Koen; Bero, Mamdouh A.; Jenneson, Paul; Morton, Edward J.; Gilboy, Walter B.

    2001-12-01

    Methods based on magnetic resonance imaging for the measurement of three-dimensional distributions of radiation dose are highly developed. However, relatively little work has been done on optical computed tomography (OCT). This paper describes a new OCT scanner based on a broad beam light source and a two-dimensional charge-coupled device (CCD) detector. A number of key design features are discussed including the light source; the scanning tank, turntable and stepper motor control; the diffuser screen onto which images are projected and the detector. It is shown that the non-uniform pixel sensitivity of the low-cost CCD detector used and the granularity of the diffuser screen lead to a serious ring artefact in the reconstructed images. Methods are described for eliminating this. The problems arising from reflection and refraction at the walls of the gel container are explained. Optical ray-tracing simulations are presented for cylindrical containers with a variety of radii and verified experimentally. Small changes in the model parameters lead to large variations in the signal intensity observed in the projection data. The effect of imperfect containers on data quality is discussed and a method based on a 'correction scan' is shown to be successful in correcting many of the related image artefacts. The results of two tomography experiments are presented. In the first experiment, a radiochromic Fricke gel sample was exposed four times in different positions to a 100 kVp x-ray beam perpendicular to the plane of imaging. Images of absorbed dose with slice thickness of 140 μm were acquired, with 'true' in-plane resolution of 560 × 560 μm2 at the edge of the 72 mm field of view and correspondingly higher resolution at the centre. The nominal doses measured correlated well with the known exposure times. The second experiment demonstrated the well known phenomenon of diffusion in the dosemeter gels and yielded a value of (0.12 +/- 0.02) mm2 s-1 for the diffusion

  15. A CCD-based optical CT scanner for high-resolution 3D imaging of radiation dose distributions: equipment specifications, optical simulations and preliminary results.

    PubMed

    Doran, S J; Koerkamp, K K; Bero, M A; Jenneson, P; Morton, E J; Gilboy, W B

    2001-12-01

    Methods based on magnetic resonance imaging for the measurement of three-dimensional distributions of radiation dose are highly developed. However, relatively little work has been done on optical computed tomography (OCT). This paper describes a new OCT scanner based on a broad beam light source and a two-dimensional charge-coupled device (CCD) detector. A number of key design features are discussed including the light source; the scanning tank, turntable and stepper motor control; the diffuser screen onto which images are projected and the detector. It is shown that the non-uniform pixel sensitivity of the low-cost CCD detector used and the granularity of the diffuser screen lead to a serious ring artefact in the reconstructed images. Methods are described for eliminating this. The problems arising from reflection and refraction at the walls of the gel container are explained. Optical ray-tracing simulations are presented for cylindrical containers with a variety of radii and verified experimentally. Small changes in the model parameters lead to large variations in the signal intensity observed in the projection data. The effect of imperfect containers on data quality is discussed and a method based on a 'correction scan' is shown to be successful in correcting many of the related image artefacts. The results of two tomography experiments are presented. In the first experiment, a radiochromic Fricke gel sample was exposed four times in different positions to a 100 kVp x-ray beam perpendicular to the plane of imaging. Images of absorbed dose with slice thickness of 140 microm were acquired. with 'true' in-plane resolution of 560 x 560 microm2 at the edge of the 72 mm field of view and correspondingly higher resolution at the centre. The nominal doses measured correlated well with the known exposure times. The second experiment demonstrated the well known phenomenon of diffusion in the dosemeter gels and yielded a value of (0.12 +/- 0.02) mm2 s(-1) for the diffusion

  16. CT Scans of Cores Metadata, Barrow, Alaska 2015

    DOE Data Explorer

    Katie McKnight; Tim Kneafsey; Craig Ulrich

    2015-03-11

    Individual ice cores were collected from Barrow Environmental Observatory in Barrow, Alaska, throughout 2013 and 2014. Cores were drilled along different transects to sample polygonal features (i.e. the trough, center and rim of high, transitional and low center polygons). Most cores were drilled around 1 meter in depth and a few deep cores were drilled around 3 meters in depth. Three-dimensional images of the frozen cores were constructed using a medical X-ray computed tomography (CT) scanner. TIFF files can be uploaded to ImageJ (an open-source imaging software) to examine soil structure and densities within each core.

  17. Pancreas tumor model in rabbit imaged by perfusion CT scans

    NASA Astrophysics Data System (ADS)

    Gunn, Jason; Tichauer, Kenneth; Moodie, Karen; Kane, Susan; Hoopes, Jack; Stewart, Errol E.; Hadway, Jennifer; Lee, Ting-Yim; Pereira, Stephen P.; Pogue, Brian W.

    2013-03-01

    The goal of this work was to develop and validate a pancreas tumor animal model to investigate the relationship between photodynamic therapy (PDT) effectiveness and photosensitizer drug delivery. More specifically, this work lays the foundation for investigating the utility of dynamic contrast enhanced blood perfusion imaging to be used to inform subsequent PDT. A VX2 carcinoma rabbit cell line was grown in the tail of the pancreas of three New Zealand White rabbits and approximately 3-4 weeks after implantation the rabbits were imaged on a CT scanner using a contrast enhanced perfusion protocol, providing parametric maps of blood flow, blood volume, mean transit time, and vascular permeability surface area product.

  18. CT Hounsfield Numbers of Soft Tissues on Unenhanced Abdominal CT Scans: Variability Between Two Different Manufacturers’ MDCT Scanners

    PubMed Central

    Lamba, Ramit; McGahan, John P.; Corwin, Michael T.; Li, Chin-Shang; Tran, Tien; Seibert, J. Anthony; Boone, John M.

    2016-01-01

    OBJECTIVE The purpose of this study is to determine whether Hounsfield numbers of soft tissues on unenhanced abdominal CT of the same patient vary on repeat scans done on two different manufacturers’ MDCT scanners. MATERIALS AND METHODS A database search was performed to identify patients older than 18 years who underwent unenhanced CT of the abdomen and pelvis performed both on a Volume CT (GE Healthcare) and a Definition AS Plus (Siemens Healthcare) 64-MDCT scanner within 12 months of each other. After excluding those patients for whom Hounsfield unit measurements would be affected by mitigating factors, 48 patients (mean age, 58.8 years) were identified. Hounsfield unit measurements were obtained in nine different soft-tissue anatomic locations on each scan, and the location of these sites was kept identical on each scan pair. Data were analyzed to evaluate Hounsfield unit differences between these scanners. RESULTS In general, there was a low consistency in the Hounsfield unit measurements for each of these sites on scans obtained by the two scanners, with the subcutaneous fat in the left posterolateral flank showing the lowest correlation (intraclass correlation coefficient, 0.198). There were differences in the Hounsfield unit measurements obtained in all anatomic sites on scans obtained by both scanners. Mean Hounsfield unit measurements obtained on the Definition AS Plus scanner were lower than those obtained on the Volume CT scanner, with the intriguing exception of the anterior midline subcutaneous fat Hounsfield unit measurements, which were higher on the Definition AS Plus scanner. All differences were statistically significant (p < 0.05). CONCLUSION Hounsfield unit measurements for unenhanced abdominal soft tissues of the same patient vary between scanners of two common MDCT manufacturers. PMID:25341139

  19. Unbiased Scanning Method and Data Banking Approach Using Ultra-High Performance Liquid Chromatography Coupled with High-Resolution Mass Spectrometry for Quantitative Comparison of Metabolite Exposure in Plasma across Species Analyzed at Different Dates.

    PubMed

    Gao, Hongying; Deng, Shibing; Obach, R Scott

    2015-12-01

    An unbiased scanning methodology using ultra high-performance liquid chromatography coupled with high-resolution mass spectrometry was used to bank data and plasma samples for comparing the data generated at different dates. This method was applied to bank the data generated earlier in animal samples and then to compare the exposure to metabolites in animal versus human for safety assessment. With neither authentic standards nor prior knowledge of the identities and structures of metabolites, full scans for precursor ions and all ion fragments (AIF) were employed with a generic gradient LC method to analyze plasma samples at positive and negative polarity, respectively. In a total of 22 tested drugs and metabolites, 21 analytes were detected using this unbiased scanning method except that naproxen was not detected due to low sensitivity at negative polarity and interference at positive polarity; and 4'- or 5-hydroxy diclofenac was not separated by a generic UPLC method. Statistical analysis of the peak area ratios of the analytes versus the internal standard in five repetitive analyses over approximately 1 year demonstrated that the analysis variation was significantly different from sample instability. The confidence limits for comparing the exposure using peak area ratio of metabolites in animal plasma versus human plasma measured over approximately 1 year apart were comparable to the analysis undertaken side by side on the same days. These statistical analysis results showed it was feasible to compare data generated at different dates with neither authentic standards nor prior knowledge of the analytes. PMID:26528960

  20. Analyzing the human liver vascular architecture by combining vascular corrosion casting and micro-CT scanning: a feasibility study

    PubMed Central

    Debbaut, Charlotte; Segers, Patrick; Cornillie, Pieter; Casteleyn, Christophe; Dierick, Manuel; Laleman, Wim; Monbaliu, Diethard

    2014-01-01

    Although a full understanding of the hepatic circulation is one of the keys to successfully perform liver surgery and to elucidate liver pathology, relatively little is known about the functional organization of the liver vasculature. Therefore, we materialized and visualized the human hepatic vasculature at different scales, and performed a morphological analysis by combining vascular corrosion casting with novel micro-computer tomography (CT) and image analysis techniques. A human liver vascular corrosion cast was obtained by simultaneous resin injection in the hepatic artery (HA) and portal vein (PV). A high resolution (110 μm) micro-CT scan of the total cast allowed gathering detailed macrovascular data. Subsequently, a mesocirculation sample (starting at generation 5; 88 × 68 × 80 mm³) and a microcirculation sample (terminal vessels including sinusoids; 2.0 × 1.5 × 1.7 mm³) were dissected and imaged at a 71-μm and 2.6-μm resolution, respectively. Segmentations and 3D reconstructions allowed quantifying the macro-and mesoscale branching topology, and geometrical features of HA, PV and hepatic venous trees up to 13 generations (radii ranging from 13.2 mm to 80 μm; lengths from 74.4 mm to 0.74 mm), as well as microvascular characteristics (mean sinusoidal radius of 6.63 μm). Combining corrosion casting and micro-CT imaging allows quantifying the branching topology and geometrical features of hepatic trees using a multiscale approach from the macro-down to the microcirculation. This may lead to novel insights into liver circulation, such as internal blood flow distributions and anatomical consequences of pathologies (e.g. cirrhosis). PMID:24433401

  1. What to do when a smoker's CT scan is "normal"?: Implications for lung cancer screening.

    PubMed

    Zurawska, Joanna H; Jen, Rachel; Lam, Stephen; Coxson, Harvey O; Leipsic, Jonathon; Sin, Don D

    2012-05-01

    Lung cancer is the leading cause of cancer-related mortality in the United States and around the world. There are > 90 million current and ex-smokers in the United States who are at increased risk of lung cancer. The published data from the National Lung Screening Trial (NLST) suggest that yearly screening with low-dose thoracic CT scan in heavy smokers can reduce lung cancer mortality by 20% and all-cause mortality by 7%. However, to implement this program nationwide using the NLST inclusion and exclusion criteria would be extremely expensive, with CT scan costs alone > $2 billion per annum. In this article, we offer a possible low-cost strategy to risk-stratify smokers on the basis of spirometry measurements and emphysema scoring by radiologists on CT scans. PMID:22553261

  2. Construction of mouse phantoms from segmented CT scan data for radiation dosimetry studies

    NASA Astrophysics Data System (ADS)

    Welch, D.; Harken, A. D.; Randers-Pehrson, G.; Brenner, D. J.

    2015-05-01

    We present the complete construction methodology for an anatomically accurate mouse phantom made using materials which mimic the characteristics of tissue, lung, and bone for radiation dosimetry studies. Phantoms were constructed using 2 mm thick slices of tissue equivalent material which was precision machined to clear regions for insertion of lung and bone equivalent material where appropriate. Images obtained using a 3D computed tomography (CT) scan clearly indicate regions of tissue, lung, and bone that match their position within the original mouse CT scan. Additionally, radiographic films are used with the phantom to demonstrate dose mapping capabilities. The construction methodology presented here can be quickly and easily adapted to create a phantom of any specific small animal given a segmented CT scan of the animal. These physical phantoms are a useful tool to examine individual organ dose and dosimetry within mouse systems that are complicated by density inhomogeneity due to bone and lung regions.

  3. Construction of mouse phantoms from segmented CT scan data for radiation dosimetry studies

    PubMed Central

    Welch, D; Harken, A D; Randers-Pehrson, G; Brenner, D J

    2015-01-01

    We present the complete construction methodology for an anatomically accurate mouse phantom made using materials which mimic the characteristics of tissue, lung, and bone for radiation dosimetry studies. Phantoms were constructed using 2 mm thick slices of tissue equivalent material which was precision machined to clear regions for insertion of lung and bone equivalent material where appropriate. Images obtained using a 3D computed tomography (CT) scan clearly indicate regions of tissue, lung, and bone that match their position within the original mouse CT scan. Additionally, radiographic films are used with the phantom to demonstrate dose mapping capabilities. The construction methodology presented here can be quickly and easily adapted to create a phantom of any specific small animal given a segmented CT scan of the animal. These physical phantoms are a useful tool to examine individual organ dose and dosimetry within mouse systems that are complicated by density inhomogeneity due to bone and lung regions. PMID:25860401

  4. Radiation dose calculations for CT scans with tube current modulation using the approach to equilibrium function

    SciTech Connect

    Li, Xinhua; Zhang, Da; Liu, Bob

    2014-11-01

    Purpose: The approach to equilibrium function has been used previously to calculate the radiation dose to a shift-invariant medium undergoing CT scans with constant tube current [Li, Zhang, and Liu, Med. Phys. 39, 5347–5352 (2012)]. The authors have adapted this method to CT scans with tube current modulation (TCM). Methods: For a scan with variable tube current, the scan range was divided into multiple subscan ranges, each with a nearly constant tube current. Then the dose calculation algorithm presented previously was applied. For a clinical CT scan series that presented tube current per slice, the authors adopted an efficient approach that computed the longitudinal dose distribution for one scan length equal to the slice thickness, which center was at z = 0. The cumulative dose at a specific point was a summation of the contributions from all slices and the overscan. Results: The dose calculations performed for a total of four constant and variable tube current distributions agreed with the published results of Dixon and Boone [Med. Phys. 40, 111920 (14pp.) (2013)]. For an abdomen/pelvis scan of an anthropomorphic phantom (model ATOM 701-B, CIRS, Inc., VA) on a GE Lightspeed Pro 16 scanner with 120 kV, N × T = 20 mm, pitch = 1.375, z axis current modulation (auto mA), and angular current modulation (smart mA), dose measurements were performed using two lines of optically stimulated luminescence dosimeters, one of which was placed near the phantom center and the other on the surface. Dose calculations were performed on the central and peripheral axes of a cylinder containing water, whose cross-sectional mass was about equal to that of the ATOM phantom in its abdominal region, and the results agreed with the measurements within 28.4%. Conclusions: The described method provides an effective approach that takes into account subject size, scan length, and constant or variable tube current to evaluate CT dose to a shift-invariant medium. For a clinical CT scan

  5. Estimating Radiation Dose Metrics for Patients Undergoing Tube Current Modulation CT Scans

    NASA Astrophysics Data System (ADS)

    McMillan, Kyle Lorin

    Computed tomography (CT) has long been a powerful tool in the diagnosis of disease, identification of tumors and guidance of interventional procedures. With CT examinations comes the concern of radiation exposure and the associated risks. In order to properly understand those risks on a patient-specific level, organ dose must be quantified for each CT scan. Some of the most widely used organ dose estimates are derived from fixed tube current (FTC) scans of a standard sized idealized patient model. However, in current clinical practice, patient size varies from neonates weighing just a few kg to morbidly obese patients weighing over 200 kg, and nearly all CT exams are performed with tube current modulation (TCM), a scanning technique that adjusts scanner output according to changes in patient attenuation. Methods to account for TCM in CT organ dose estimates have been previously demonstrated, but these methods are limited in scope and/or restricted to idealized TCM profiles that are not based on physical observations and not scanner specific (e.g. don't account for tube limits, scanner-specific effects, etc.). The goal of this work was to develop methods to estimate organ doses to patients undergoing CT scans that take into account both the patient size as well as the effects of TCM. This work started with the development and validation of methods to estimate scanner-specific TCM schemes for any voxelized patient model. An approach was developed to generate estimated TCM schemes that match actual TCM schemes that would have been acquired on the scanner for any patient model. Using this approach, TCM schemes were then generated for a variety of body CT protocols for a set of reference voxelized phantoms for which TCM information does not currently exist. These are whole body patient models representing a variety of sizes, ages and genders that have all radiosensitive organs identified. TCM schemes for these models facilitated Monte Carlo-based estimates of fully

  6. Clinical evaluation of semi-automatic landmark-based lesion tracking software for CT-scans

    PubMed Central

    2014-01-01

    Background To evaluate a semi-automatic landmark-based lesion tracking software enabling navigation between RECIST lesions in baseline and follow-up CT-scans. Methods The software automatically detects 44 stable anatomical landmarks in each thoraco/abdominal/pelvic CT-scan, sets up a patient specific coordinate-system and cross-links the coordinate-systems of consecutive CT-scans. Accuracy of the software was evaluated on 96 RECIST lesions (target- and non-target lesions) in baseline and follow-up CT-scans of 32 oncologic patients (64 CT-scans). Patients had to present at least one thoracic, one abdominal and one pelvic RECIST lesion. Three radiologists determined the deviation between lesions’ centre and the software’s navigation result in consensus. Results The initial mean runtime of the system to synchronize baseline and follow-up examinations was 19.4 ± 1.2 seconds, with subsequent navigation to corresponding RECIST lesions facilitating in real-time. Mean vector length of the deviations between lesions’ centre and the semi-automatic navigation result was 10.2 ± 5.1 mm without a substantial systematic error in any direction. Mean deviation in the cranio-caudal dimension was 5.4 ± 4.0 mm, in the lateral dimension 5.2 ± 3.9 mm and in the ventro-dorsal dimension 5.3 ± 4.0 mm. Conclusion The investigated software accurately and reliably navigates between lesions in consecutive CT-scans in real-time, potentially accelerating and facilitating cancer staging. PMID:25609496

  7. An old enemy not to be forgotten during PET CT scanning of cancer patients: tuberculosis

    PubMed Central

    Sezer, Ahmet; Abali, Hüseyin; Gültepe, Bilge; Koçer, Emrah; Reyhan, Mehmet; Tonyalı, Önder; Özyilkan, Özgür

    2014-01-01

    Aim of the study Positron emission tomography–computed tomography (PET CT) scan is commonly used in current medical oncology practice as an imaging method. In this study we present data from cancer patients who were followed at our clinic and suspected of having tuberculosis during PET CT scanning. After the biopsy, they were diagnosed with concomitant tuberculosis. Material and methods In this study, 14 patients who applied to our clinic and followed up due to cancer, and had PET CT scanning for the preliminary staging or further evaluation, were included. The patients were diagnosed with metastatic or recurrent disease, and their biopsy results revealed tuberculosis. Results The mean age was 57.8 years with SD (standard deviation) 13.1 years and gender distribution of 78.6% (n = 11) females and 21.4% (n = 3) males. None of the patients had tuberculosis in their personal history (0%). Among the patients, 5 (35.7%) were diagnosed with tuberculosis during the preliminary staging, whereas 9 (64.3%) were diagnosed during the follow-up after the treatment. The median time to tuberculosis diagnosis was 11 months (min–max: 3–24 months) after the treatment. The most commonly involved lymph nodes during PET CT scanning were mediastinal in 8 (64.3%), axillary in 3 (21.4%) and para-aortic in 3 (21.4%) patients. The mean SUVmax (maximum standardised uptake value) of lymph node involved by PET CT scanning was defined as 8.5 (SD 2.6). Conclusions Despite all improvements in modern medicine, tuberculosis is still a serious public health problem. It should always be considered in differential diagnosis while evaluating PET CT scanning results of cancer patients, because it may cause false positive results. PMID:27358601

  8. Lung function in silica-exposed workers. A relationship to disease severity assessed by CT scan.

    PubMed

    Bégin, R; Ostiguy, G; Cantin, A; Bergeron, D

    1988-09-01

    To investigate the relationship of lung function, airflow limitation, and lung injury in silica-exposed workers, we analyzed the clinical, functional, and radiologic data of 94 long-term workers exposed in the granite industry or in foundries. The subjects were divided into four subsets based on chest roentgenogram and CT scan of the thorax: group 1 consisted of 21 subjects with category 0 chest roentgenogram and category 0 CT scan; group 2, 28 subjects with category E 1 on both chest roentgenogram and CT scan; group 3, 18 subjects with category E 1 on chest roentgenogram but with coalescence or conglomeration or both seen only on CT scan; and group 4, 27 subjects with category E 1 and coalescence or conglomeration or both on roentgenogram and CT scan. The groups did not differ in terms of age, height, cigarette smoking, or years of exposure. Lung volumes were significantly reduced only in group 4 (p less than 0.05). Lung compliance, diffusion capacity, and the rest-exercise P(A-a)O2 gradient were reduced in groups 3 and 4 (p less than 0.05). Expiratory flow rates were significantly reduced in groups 2, 3, and 4, with the lowest values in group 4. The expiratory flow rates in group 3 were significantly lower in group 3 than in group 2. These results support the concept that airflow in silica-exposed workers is significantly reduced when the disease is detectable on simple chest roentgenogram; coalescence or conglomeration or both on chest roentgenogram or CT scan is associated with significant loss of lung volumes, gas exchange function, and increased airflow obstruction. PMID:3409733

  9. Patient willingness and barriers to receiving a CT scan for lung cancer screening.

    PubMed

    Delmerico, Jennifer; Hyland, Andrew; Celestino, Paula; Reid, Mary; Cummings, K Michael

    2014-06-01

    CT scans are becoming a more common method for detecting lung cancers at an earlier, potentially more curable, stage of disease. There is currently little data on attitudes and beliefs about screening for lung cancer. This paper presents the results of a 2011 survey of adult current and former smokers that queried about past use of CT scanning and reasons for having or not having the screening done. A random-digit dialed telephone survey was administered to a representative sample of 1290 US adults. Logistic regression analyses were used to examine the correlates of having the test while controlling for the covariates. A total of 13.4% (n = 45) of the sample had ever had a CT scan to detect lung cancer. Of current smokers, 14.6% had received a CT scan, as compared with 12.7% of former smokers. The oldest age group (55+) was significantly more likely to have received a CT scan than the younger age groups. 78.5% of current smokers and 81.4% of former smokers indicated willingness to get the test if advised to do so by their doctor. Among those who said they were not willing to get screened, lack of insurance coverage was cited by 33% of current smokers and 25% of former smokers. Additionally, 33% of current smokers were afraid to find out whether they had cancer. The main barrier to CT scanning for lung cancer is likely to be insurance coverage for the test, which would be a burden for those on limited and fixed incomes. Next steps should include further research into the effect of increased public education about the availability, risks, benefits and barriers to lung cancer screening. PMID:24674155

  10. Glenoid loosening after total shoulder arthroplasty: an in vitro CT-scan study.

    PubMed

    Gregory, Thomas; Hansen, Ulrich; Taillieu, Fabienne; Baring, Toby; Brassart, Nicolas; Mutchler, Céline; Amis, Andrew; Augereau, Bernard; Emery, Roger

    2009-12-01

    Glenoid fixation failure has only been grossly characterized. This lack of information hinders attempts to improve fixation because of a lack of methodologies for detecting and monitoring fixation failure. Our goal was twofold: to collect detailed data of glenoid fixation fracture, and to investigate computed tomography (CT)-scanning as a tool for investigations of fixation failure. Six cadaver scapulas and six bone-substitute specimens were cyclically loaded and CT-scanned at clinical settings after 0, 1,000, 5,000, 10,000, 30,000, 50,000 and 70,000 load cycles. The fixation status was evaluated by inspection of the scans. After 70,000 cycles, the specimens were sectioned, and the fixation inspected by microscopy. The results of the microscopy analysis were compared to the CT-scan analysis. Fracture of the glenoid fixation initiated at the edge of the glenoid rim and propagated towards and around the keel of the implant. The entire process from initiation to complete fracture took place at the polyethylene implant-cement interface, while the cement, the adjacent bone, and the cement-bone interface remained intact. Thus, strengthening the polyethylene-cement interface should improve glenoid fixation. Microscopy results validated the CT methodology, suggesting that the CT technique is reliable. PMID:19472376

  11. High-pitch spiral acquisition: a new scan mode for coronary CT angiography.

    PubMed

    Achenbach, Stephan; Marwan, Mohamed; Schepis, Tiziano; Pflederer, Tobias; Bruder, Herbert; Allmendinger, Thomas; Petersilka, Martin; Anders, Katharina; Lell, Michael; Kuettner, Axel; Ropers, Dieter; Daniel, Werner G; Flohr, Thomas

    2009-01-01

    Coronary CT angiography allows high-quality imaging of the coronary arteries when state-of-the-art CT systems are used. However, radiation exposure has been a concern. We describe a new scan mode that uses a very high-pitch spiral acquisition, "Flash Spiral," which has been developed specifically for low-dose imaging with dual-source CT. The scan mode uses a pitch of 3.2 to acquire a spiral CT data set, while covering the entire volume of the heart in one cardiac cycle. Data acquisition is prospectively triggered by the electrocardiogram and starts in late systole to be completed within one cardiac cycle. Images are reconstructed with a temporal resolution that corresponds to one-quarter of the gantry rotation time. Throughout the data set, subsequent images are reconstructed at later time instants in the cardiac cycle. In a patient with a heart rate of 49 beats/min, the Flash Spiral scan mode was used with a first-generation dual-source CT system and allowed artifact-free visualization of the coronary arteries with a radiation exposure of 1.7 mSv for a 12-cm scan range at 120 kVp tube voltage. PMID:19332343

  12. Overbeaming and overlapping of volume-scan CT with tube current modulation in a 320-detector row CT scanner

    NASA Astrophysics Data System (ADS)

    Liao, Ying-Lan; Chen, Yan-Shi; Lai, Nan-Ku; Chuang, Keh-Shih; Tsai, Hui-Yu

    2014-11-01

    The purpose of this study was to evaluate the performance of volume scan tube current modulation (VS-ATCM) with adaptive iterative dose reduction 3D (AIDR3D) technique in abdomen CT examinations. We scanned an elliptical cone-shaped phantom utilizing AIDR3D technique combined with VS-ATCM mode in a 320-detector row CT scanner. The image noise distributions with conventional filtered back-projction (FBP) technique and those with AIDR3D technique were compared. The radiation dose profile and tube current time product (mAs) in three noise levels of VS-ATCM modes were compared. The radiation beam profiles of five preset scan lengths were measured using Gafchromic film strips to assess the effects of overbeaming and everlapping. The results indicated that the image noises with AIDR3D technique was 13-74% lower than those in FBP technique. The mAs distributions can be a prediction for various abdominal sizes when undergoing a VS-ATCM mode scan. Patients can receive the radiation dose of overbeaming and overlapping during the VS-ATCM mode scans.

  13. High Resolution Neutral Atom Microscope

    NASA Astrophysics Data System (ADS)

    Bucay, Igal; Castillo-Garza, Rodrigo; Stratis, Georgios; Raizen, Mark

    2015-03-01

    We are developing a high resolution neutral atom microscope based on metastable atom electron spectroscopy (MAES). When a metastable atom of a noble gas is near a solid, a surface electron will tunnel to an empty energy level of the metastable atom, thereby ejecting the excited electron from the atom. The emitted electrons carry information regarding the local topography and electronic, magnetic, and chemical structures of most hard materials. Furthermore, using a chromatic aberration corrected magnetic hexapole lens we expect to attain a spatial resolution below 10 nm. We will use this microscope to investigate how local phenomena can give rise to macroscopic effects in materials that cannot be probed using a scanning tunneling microscope, namely insulating transition metal oxides.

  14. Synthetic CT: Simulating low dose single and dual energy protocols from a dual energy scan

    SciTech Connect

    Wang, Adam S.; Pelc, Norbert J.

    2011-10-15

    Purpose: The choice of CT protocol can greatly impact patient dose and image quality. Since acquiring multiple scans at different techniques on a given patient is undesirable, the ability to predict image quality changes starting from a high quality exam can be quite useful. While existing methods allow one to generate simulated images of lower exposure (mAs) from an acquired CT exam, the authors present and validate a new method called synthetic CT that can generate realistic images of a patient at arbitrary low dose protocols (kVp, mAs, and filtration) for both single and dual energy scans. Methods: The synthetic CT algorithm is derived by carefully ensuring that the expected signal and noise are accurate for the simulated protocol. The method relies on the observation that the material decomposition from a dual energy CT scan allows the transmission of an arbitrary spectrum to be predicted. It requires an initial dual energy scan of the patient to either synthesize raw projections of a single energy scan or synthesize the material decompositions of a dual energy scan. The initial dual energy scan contributes inherent noise to the synthesized projections that must be accounted for before adding more noise to simulate low dose protocols. Therefore, synthetic CT is subject to the constraint that the synthesized data have noise greater than the inherent noise. The authors experimentally validated the synthetic CT algorithm across a range of protocols using a dual energy scan of an acrylic phantom with solutions of different iodine concentrations. An initial 80/140 kVp dual energy scan of the phantom provided the material decomposition necessary to synthesize images at 100 kVp and at 120 kVp, across a range of mAs values. They compared these synthesized single energy scans of the phantom to actual scans at the same protocols. Furthermore, material decompositions of a 100/120 kVp dual energy scan are synthesized by adding correlated noise to the initial material

  15. High resolution Doppler lidar

    NASA Technical Reports Server (NTRS)

    Abreu, Vincent J.; Hays, Paul B.; Barnes, John E.

    1989-01-01

    A high resolution lidar system was implemented to measure winds in the lower atmosphere. The wind speed along the line of sight was determined by measuring the Doppler shift of the aerosol backscattered laser signal. The system in its present configuration is stable, and behaves as indicated by theoretical simulations. This system was built to demonstrate the capabilities of the detector system as a prototype for a spaceborne lidar. The detector system investigated consisted of a plane Fabry-Perot etalon, and a 12-ring anode detector. This system is generically similar to the Fabry-Perot interferometer developed for passive wind measurements on board the Dynamics Explorer satellite. That this detector system performs well in a lidar configuration was demonstrated.

  16. High resolution ultrasonic densitometer

    SciTech Connect

    Dress, W.B.

    1983-01-01

    The velocity of torsional stress pulses in an ultrasonic waveguide of non-circular cross section is affected by the temperature and density of the surrounding medium. Measurement of the transit times of acoustic echoes from the ends of a sensor section are interpreted as level, density, and temperature of the fluid environment surrounding that section. This paper examines methods of making these measurements to obtain high resolution, temperature-corrected absolute and relative density and level determinations of the fluid. Possible applications include on-line process monitoring, a hand-held density probe for battery charge state indication, and precise inventory control for such diverse fluids as uranium salt solutions in accountability storage and gasoline in service station storage tanks.

  17. High-resolution ultrasound evaluation of experimental brain abscess evolution: comparison with computed tomography and neuropathology.

    PubMed

    Enzmann, D R; Britt, R H; Lyons, B; Carroll, B; Wilson, D A; Buxton, J

    1982-01-01

    Computed tomographic (CT) and high-resolution ultrasound (HRUS) imaging of experimental brain abscess were correlated with neuropathologic findings in nine mongrel dogs. The HRUS scan was more sensitive to different histologic features than the CT scan but both accurately delineated the evolution of the experimental brain abscess. All stages of abscess evolution were characterized by an appearance of an echogenic rim with a hypoechoic center. In the early stages the echogenicity of the abscess was related primarily to marked cellular infiltration, while in the late stages extensive collagen deposition correlated closely with the echo pattern. The size of the abscess in the cerebritis stages appeared smaller on the HRUS scan than on the CT scan because the latter modality detected the extensive cerebritis around the developing necrotic center whereas the HRUS scan did not. This discrepancy disappeared in the capsule stages. The HRUS scan provided a more accurate depiction of the neuropathologic characteristics of the necrotic than did the CT scan. Healing of the abscess, indicated by a decrease in size of the hypoechoic center, was accurately detected by the HRUS scan. PMID:7053556

  18. High-resolution ultrasound evaluation of experimental brain abscess evolution: comparison with computed tomography and neuropathology

    SciTech Connect

    Enzmann, D.R.; Britt, R.H.; Lyons, B.; Carroll, B.; Wilson, D.A.; Buxton, J.

    1982-01-01

    Computed tomographic (CT) and high-resolution ultrasound (HRUS) imaging of experimental brain abscess were correlated with neuropathologic findings in nine mongrel dogs. The HRUS scan was more sensitive to different histologic features than the CT scan but both accurately delineated the evolution of the experimental brain abscess. All stages of abscess evolution were characterized by an appearance of an echogenic rim with a hypoechoic center. In the early stages the echogenicity of the abscess was related primarily to marked cellular infiltration while in the late stages extensive collagen deposition correlated closely with the echo pattern. The size of the abscess in the cerebritis stages appeared smaller on the HRUS scan than on the CT scan because the latter modality detected the extensive cerebritis around the developing necrotic center whereas the HRUS scan did not. This discrepancy disappeared in the capsule stages. The HRUS scan provided a more accurate depiction of the neuropathologic characteristics of the necrotic center than did the CT scan. Healing of the abscess, indicated by a decrease in size of the hypoechoic center, was accurately detected by the HRUS scan.

  19. Treatment of Alzheimer Disease With CT Scans: A Case Report.

    PubMed

    Cuttler, Jerry M; Moore, Eugene R; Hosfeld, Victor D; Nadolski, David L

    2016-01-01

    Alzheimer disease (AD) primarily affects older adults. This neurodegenerative disorder is the most common cause of dementia and is a leading source of their morbidity and mortality. Patient care costs in the United States are about 200 billion dollars and will more than double by 2040. This case report describes the remarkable improvement in a patient with advanced AD in hospice who received 5 computed tomography scans of the brain, about 40 mGy each, over a period of 3 months. The mechanism appears to be radiation-induced upregulation of the patient's adaptive protection systems against AD, which partially restored cognition, memory, speech, movement, and appetite. PMID:27103883

  20. In Vivo High-Resolution Trabecular Microstructure of Kienböck Lunate before and after Radial Shortening: A Case Report.

    PubMed

    Burnier, Marion; Herzberg, Guillaume; Chapurlat, Roland; Boutroy, Stéphanie

    2016-05-01

    We report a patient with stage IIIB Kienböck disease treated with radial shortening where preoperative and sequential postoperative imaging were done using in vivo high-resolution peripheral quantitative micro-computed tomography (micro-CT) scan. Sequential in vivo micro-CT scan analysis of a target zone of the Kienböck lunate of this patient demonstrated early signs of lunate remodeling (bone trabecular densification) at 5-month follow-up suggesting an ongoing healing process. These early remodeling micro-CT scan signs were confirmed at 5 years' follow-up as well. PMID:27104074

  1. Normalization of CT scans reconstructed with different kernels to reduce variability in emphysema measurements

    NASA Astrophysics Data System (ADS)

    Gallardo Estrella, L.; van Ginneken, B.; van Rikxoort, E. M.

    2013-03-01

    Chronic Obstructive Pulmonary Disease (COPD) is a lung disease characterized by progressive air flow limitation caused by emphysema and chronic bronchitis. Emphysema is quantified from chest computed tomography (CT) scans as the percentage of attentuation values below a fixed threshold. The emphysema quantification varies substantially between scans reconstructed with different kernels, limiting the possibilities to compare emphysema quantifications obtained from scans with different reconstruction parameters. In this paper we propose a method to normalize scans reconstructed with different kernels to have the same characteristics as scans reconstructed with a reference kernel and investigate if this normalization reduces the variability in emphysema quantification. The proposed normalization splits a CT scan into different frequency bands based on hierarchical unsharp masking. Normalization is performed by changing the energy in each frequency band to the average energy in each band in the reference kernel. A database of 15 subjects with COPD was constructed for this study. All subjects were scanned at total lung capacity and the scans were reconstructed with four different reconstruction kernels. The normalization was applied to all scans. Emphysema quantification was performed before and after normalization. It is shown that the emphysema score varies substantially before normalization but the variation diminishes after normalization.

  2. Simulation of four-dimensional CT images from deformable registration between inhale and exhale breath-hold CT scans

    SciTech Connect

    Sarrut, David; Boldea, Vlad; Miguet, Serge; Ginestet, Chantal

    2006-03-15

    Purpose: We propose to simulate an artificial four-dimensional (4-D) CT image of the thorax during breathing. It is performed by deformable registration of two CT scans acquired at inhale and exhale breath-hold. Materials and methods: Breath-hold images were acquired with the ABC (Active Breathing Coordinator) system. Dense deformable registrations were performed. The method was a minimization of the sum of squared differences (SSD) using an approximated second-order gradient. Gaussian and linear-elastic vector field regularizations were compared. A new preprocessing step, called a priori lung density modification (APLDM), was proposed to take into account lung density changes due to inspiration. It consisted of modulating the lung densities in one image according to the densities in the other, in order to make them comparable. Simulated 4-D images were then built by vector field interpolation and image resampling of the two initial CT images. A variation in the lung density was taken into account to generate intermediate artificial CT images. The Jacobian of the deformation was used to compute voxel values in Hounsfield units. The accuracy of the deformable registration was assessed by the spatial correspondence of anatomic landmarks located by experts. Results: APLDM produced statistically significantly better results than the reference method (registration without APLDM preprocessing). The mean (and standard deviation) of distances between automatically found landmark positions and landmarks set by experts were 2.7(1.1) mm with APLDM, and 6.3(3.8) mm without. Interexpert variability was 2.3(1.2) mm. The differences between Gaussian and linear elastic regularizations were not statistically significant. In the second experiment using 4-D images, the mean difference between automatic and manual landmark positions for intermediate CT images was 2.6(2.0) mm. Conclusion: The generation of 4-D CT images by deformable registration of inhale and exhale CT images is

  3. The Impact of Sources of Variability on Parametric Response Mapping of Lung CT Scans

    PubMed Central

    Boes, Jennifer L.; Bule, Maria; Hoff, Benjamin A.; Chamberlain, Ryan; Lynch, David A.; Stojanovska, Jadranka; Martinez, Fernando J.; Han, Meilan K.; Kazerooni, Ella A.; Ross, Brian D.; Galbán, Craig J.

    2015-01-01

    Parametric response mapping (PRM) of inspiration and expiration computed tomography (CT) images improves the radiological phenotyping of chronic obstructive pulmonary disease (COPD). PRM classifies individual voxels of lung parenchyma as normal, emphysematous, or nonemphysematous air trapping. In this study, bias and noise characteristics of the PRM methodology to CT and clinical procedures were evaluated to determine best practices for this quantitative technique. Twenty patients of varying COPD status with paired volumetric inspiration and expiration CT scans of the lungs were identified from the baseline COPD-Gene cohort. The impact of CT scanner manufacturer and reconstruction kernels were evaluated as potential sources of variability in PRM measurements along with simulations to quantify the impact of inspiration/expiration lung volume levels, misregistration, and image spacing on PRM measurements. Negligible variation in PRM metrics was observed when CT scanner type and reconstruction were consistent and inspiration/expiration lung volume levels were near target volumes. CT scanner Hounsfield unit drift occurred but remained difficult to ameliorate. Increasing levels of image misregistration and CT slice spacing were found to have a minor effect on PRM measurements. PRM-derived values were found to be most sensitive to lung volume levels and mismatched reconstruction kernels. As with other quantitative imaging techniques, reliable PRM measurements are attainable when consistent clinical and CT protocols are implemented. PMID:26568983

  4. Phospholipid Topography of Whole-Body Sections of the Anopheles stephensi Mosquito, Characterized by High-Resolution Atmospheric-Pressure Scanning Microprobe Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging.

    PubMed

    Khalil, Saleh M; Römpp, Andreas; Pretzel, Jette; Becker, Katja; Spengler, Bernhard

    2015-11-17

    High-resolution atmospheric-pressure scanning microprobe matrix-assisted laser desorption/ionization mass spectrometry imaging (AP-SMALDI MSI) has been employed to study the molecular anatomical structure of rodent malaria vector Anopheles stephensi mosquitoes. A dedicated sample preparation method was developed which suits both, the special tissue properties of the sample and the requirements of high-resolution MALDI imaging. Embedding in 5% carboxymethylcellulose (CMC) was used to maintain the tissue integrity of the whole mosquitoes, being very soft, fragile, and difficult to handle. Individual lipid compounds, specifically representing certain cell types, tissue areas, or organs, were detected and imaged in 20 μm-thick whole-body tissue sections at a spatial resolution of 12 μm per image pixel. Mass spectrometric data and information quality were based on a mass resolution of 70,000 (at m/z 200) and a mass accuracy of better than 2 ppm in positive-ion mode on an orbital trapping mass spectrometer. A total of 67 imaged lipids were assigned by database search and, in a number of cases, identified via additional MS/MS fragmentation studies directly from tissue. This is the first MSI study at 12 μm spatial resolution of the malaria vector Anopheles. The study provides insights into the molecular anatomy of Anopheles stephensi and the distribution and localization of major classes of glycerophospholipids and sphingolipids. These data can be a basis for future experiments, investigating, e.g., the metabolism of Plasmodium-infected and -uninfected Anopheles mosquitoes. PMID:26491885

  5. Interactive lung segmentation in abnormal human and animal chest CT scans

    SciTech Connect

    Kockelkorn, Thessa T. J. P. Viergever, Max A.; Schaefer-Prokop, Cornelia M.; Bozovic, Gracijela; Muñoz-Barrutia, Arrate; Rikxoort, Eva M. van; Brown, Matthew S.; Jong, Pim A. de; Ginneken, Bram van

    2014-08-15

    Purpose: Many medical image analysis systems require segmentation of the structures of interest as a first step. For scans with gross pathology, automatic segmentation methods may fail. The authors’ aim is to develop a versatile, fast, and reliable interactive system to segment anatomical structures. In this study, this system was used for segmenting lungs in challenging thoracic computed tomography (CT) scans. Methods: In volumetric thoracic CT scans, the chest is segmented and divided into 3D volumes of interest (VOIs), containing voxels with similar densities. These VOIs are automatically labeled as either lung tissue or nonlung tissue. The automatic labeling results can be corrected using an interactive or a supervised interactive approach. When using the supervised interactive system, the user is shown the classification results per slice, whereupon he/she can adjust incorrect labels. The system is retrained continuously, taking the corrections and approvals of the user into account. In this way, the system learns to make a better distinction between lung tissue and nonlung tissue. When using the interactive framework without supervised learning, the user corrects all incorrectly labeled VOIs manually. Both interactive segmentation tools were tested on 32 volumetric CT scans of pigs, mice and humans, containing pulmonary abnormalities. Results: On average, supervised interactive lung segmentation took under 9 min of user interaction. Algorithm computing time was 2 min on average, but can easily be reduced. On average, 2.0% of all VOIs in a scan had to be relabeled. Lung segmentation using the interactive segmentation method took on average 13 min and involved relabeling 3.0% of all VOIs on average. The resulting segmentations correspond well to manual delineations of eight axial slices per scan, with an average Dice similarity coefficient of 0.933. Conclusions: The authors have developed two fast and reliable methods for interactive lung segmentation in

  6. "Bottle Brush Sign"-Spinal Meningeal Disease on 18F-FDG PET-CT Scan.

    PubMed

    Riaz, Saima; Naz, Fozia; Bashir, Humayun; Niazi, Imran Khalid

    2016-09-01

    A 30-year-old man with a history of stage IV AE diffuse large cell lymphoma of left proximal humerus presented with new onset lower limb weakness at completion of chemotherapy. The F-FDG PET-CT scan showed increased intraspinal uptake from T12 to S1 vertebrae with unique "bottle brush" appearance in keeping with spinal meningeal disease. The leptomeningeal disease was further confirmed on correlative MRI scan. PMID:27405033

  7. Automatic coronary calcium scoring in low-dose non-ECG-synchronized thoracic CT scans

    NASA Astrophysics Data System (ADS)

    Isgum, Ivana; Prokop, Mathias; Jacobs, Peter C.; Gondrie, Martijn J.; Mali, Willem P. Th. M.; Viergever, Max A.; van Ginneken, Bram

    2010-03-01

    This work presents a system for automatic coronary calcium scoring and cardiovascular risk stratification in thoracic CT scans. Data was collected from a Dutch-Belgian lung cancer screening trial. In 121 low-dose, non-ECG synchronized, non-contrast enhanced thoracic CT scans an expert scored coronary calcifications manually. A key element of the proposed algorithm is that the approximate position of the coronary arteries was inferred with a probabilistic coronary calcium atlas. This atlas was created with atlas-based segmentation from 51 scans and their manually identified calcifications, and was registered to each unseen test scan. In the test scans all objects with density above 130 HU were considered candidates that could represent coronary calcifications. A statistical pattern recognition system was designed to classify these candidates using features that encode their spatial position relative to the inferred position of the coronaries obtained from the atlas registration. In addition, size and texture features were computed for all candidates. Two consecutive classifiers were used to label each candidate. The system was trained with 35 and tested with another 35 scans. The detected calcifications were quantified and cardiovascular risk was determined for each subject. The system detected 71% of coronary calcifications with an average of 0.9 false positive objects per scan. Cardiovascular risk category was correctly assigned to 29 out of 35 subjects (83%). Five scans (14%) were one category off, and only one scan (3%) was two categories off. We conclude that automatic assessment of the cardiovascular risk from low-dose, non-ECG synchronized thoracic CT scans appears feasible.

  8. Multienergy CT acquisition and reconstruction with a stepped tube potential scan

    SciTech Connect

    Shen, Le; Xing, Yuxiang

    2015-01-15

    Purpose: Based on an energy-dependent property of matter, one may obtain a pseudomonochromatic attenuation map, a material composition image, an electron-density distribution, and an atomic number image using a dual- or multienergy computed tomography (CT) scan. Dual- and multienergy CT scans broaden the potential of x-ray CT imaging. The development of such systems is very useful in both medical and industrial investigations. In this paper, the authors propose a new dual- and multienergy CT system design (segmental multienergy CT, SegMECT) using an innovative scanning scheme that is conveniently implemented on a conventional single-energy CT system. The two-step-energy dual-energy CT can be regarded as a special case of SegMECT. A special reconstruction method is proposed to support SegMECT. Methods: In their SegMECT, a circular trajectory in a CT scan is angularly divided into several arcs. The x-ray source is set to a different tube voltage for each arc of the trajectory. Thus, the authors only need to make a few step changes to the x-ray energy during the scan to complete a multienergy data acquisition. With such a data set, the image reconstruction might suffer from severe limited-angle artifacts if using conventional reconstruction methods. To solve the problem, they present a new prior-image-based reconstruction technique using a total variance norm of a quotient image constraint. On the one hand, the prior extracts structural information from all of the projection data. On the other hand, the effect from a possibly imprecise intensity level of the prior can be mitigated by minimizing the total variance of a quotient image. Results: The authors present a new scheme for a SegMECT configuration and establish a reconstruction method for such a system. Both numerical simulation and a practical phantom experiment are conducted to validate the proposed reconstruction method and the effectiveness of the system design. The results demonstrate that the proposed Seg

  9. High Resolution Doppler Imager

    NASA Technical Reports Server (NTRS)

    Hays, Paul B.

    1999-01-01

    This report summarizes the accomplishments of the High Resolution Doppler Imager (HRDI) on UARS spacecraft during the period 4/l/96 - 3/31/99. During this period, HRDI operation, data processing, and data analysis continued, and there was a high level of vitality in the HRDI project. The HRDI has been collecting data from the stratosphere, mesosphere, and lower thermosphere since instrument activation on October 1, 1991. The HRDI team has stressed three areas since operations commenced: 1) operation of the instrument in a manner which maximizes the quality and versatility of the collected data; 2) algorithm development and validation to produce a high-quality data product; and 3) scientific studies, primarily of the dynamics of the middle atmosphere. There has been no significant degradation in the HRDI instrument since operations began nearly 8 years ago. HRDI operations are fairly routine, although we have continued to look for ways to improve the quality of the scientific product, either by improving existing modes, or by designing new ones. The HRDI instrument has been programmed to collect data for new scientific studies, such as measurements of fluorescence from plants, measuring cloud top heights, and lower atmosphere H2O.

  10. NOTE: An anatomically shaped lower body model for CT scanning of cadaver femurs

    NASA Astrophysics Data System (ADS)

    Tanck, Esther; Deenen, J. C. W.; Huisman, Henk Jan; Kooloos, Jan G.; Huizenga, Henk; Verdonschot, Nico

    2010-01-01

    Bone specific, CT-based finite element (FE) analyses have great potential to accurately predict the fracture risk of deteriorated bones. However, it has been shown that differences exist between FE-models of femora scanned in a water basin or scanned in situ within the human body, as caused by differences in measured bone mineral densities (BMD). In this study we hypothesized that these differences can be reduced by re-creating the patient CT-conditions by using an anatomically shaped physical model of the lower body. BMD distributions were obtained from four different femora that were scanned under three conditions: (1) in situ within the cadaver body, (2) in a water basin and (3) in the body model. The BMD of the three scanning protocols were compared at two locations: proximally, in the trabecular bone of the femoral head, and in the cortical bone of the femoral shaft. Proximally, no significant differences in BMD were found between the in situ scans and the scans in the body model, whereas the densities from the water basin scans were on average 10.8% lower than in situ. In the femoral shaft the differences between the three scanning protocols were insignificant. In conclusion, the body model better approached the in situ situation than a water basin. Future studies can use this body model to mimic patient situations and to develop protocols to improve the performance of the FE-models in actual patients.

  11. Study Finds Small Increase in Cancer Risk after Childhood CT Scans

    Cancer.gov

    A study published in the June 6, 2012, issue of The Lancet shows that radiation exposure from computed tomography (CT) scans in childhood results in very small but increased risks of leukemia and brain tumors in the first decade after exposure.

  12. Chest CT scanning for clinical suspected thoracic aortic dissection: beware the alternate diagnosis.

    PubMed

    Thoongsuwan, Nisa; Stern, Eric J

    2002-11-01

    The aim of the study was retrospectively to evaluate the spectrum of chest diseases in patients presenting with clinical suspicion of thoracic aortic dissection in the emergency department. We performed a retrospective medical records review of 86 men and 44 women (ages ranging between 23 and 106 years) with clinically suspected aortic dissection, for CT scan findings and final clinical diagnoses dating between January 1996 and September 2001. All images were obtained by using a standard protocol for aortic dissection. We found aortic dissection in 32 patients (24.6%), 22 of which were Stanford classification type A and 10 Stanford type B. In 70 patients (53.9%), chest pain could not be explained by the CT scan findings. However, in 28 patients (21.5%), CT scanning did reveal an alternate diagnosis that, along with the clinical impression, probably explained the patients' presenting symptoms, including: hiatal hernia (7), pneumonia (5), intrathoracic mass (4), pericardial effusion/hemopericardium (3), esophageal mass/rupture (2), aortic aneurysm without dissection (2), pulmonary embolism (2), pleural effusion (1), aortic rupture (1), and pancreatitis (1). In cases where there is clinical suspicion of aortic dissection, CT scan findings of an alternate diagnosis for the presenting symptoms are only slightly less common than the finding of aortic dissection itself. Although the spectrum of findings will vary depending upon your patient population, beware the alternate diagnosis. PMID:15290550

  13. Intraosseous pneumatocysts of the ilium: findings on radiographs and CT scans

    SciTech Connect

    Ramirez, H.; Blatt, E.S.; Cable, H.F.; McComb, B.L.; Zornoza, J.; Hibri, N.S.

    1984-02-01

    CT scans demonstrated a localized collection of gas adjacent to a normal sacroiliac joint in 5 patients. In each case the lesion was sharply demarcated by a thin sclerotic rim. A benign bone cyst was confirmed histologically in 2 cases. The radiologist should be aware of this appearance so as to avoid invasive procedures based on a misdiagnosis of infection or neoplasm.

  14. Kernohan's Notch: A Forgotten Cause of Hemiplegia—CT Scans Are Useful in This Diagnosis

    PubMed Central

    Panikkath, Deepa; Lim, Sian Yik

    2013-01-01

    Hemiparesis ipsilateral to a cerebral lesion can be a false localizing sign. This is due to midline shift of the midbrain resulting in compression of the contralateral pyramidal fibers on the tough dural reflection tentorium cerebelli. This may result in partial or complete damage to these fibers. Since these fibers are destined to cross in the medulla and innervate the opposite side of the body, this causes hemiparesis ipsilateral to the site of cerebral lesion. Computed tomography (CT) scans have not been used to support the diagnosis of this entity until now. We report a 68-year-old woman with a subdural hematoma who developed ipsilateral hemiparesis without any other explanation (Kernohan's notch). The CT of the head showed evidence of compression of the midbrain contralateral to the hematoma and was useful in the diagnosis. The purpose of this report is to increase the awareness of this presentation and to emphasize the utility of CT scans to support the diagnosis. PMID:24348572

  15. A semi-automated method for hexahedral mesh construction of human vertebrae from CT scans.

    PubMed

    Dai, Yifei; Niebur, Glen L

    2009-10-01

    Generation of finite element (FE) meshes of vertebrae from computed tomography (CT) scans is labour intensive due to their geometric complexity. As such, techniques that simplify creation of meshes of vertebrae are needed to make FE analysis feasible for large studies and clinical applications. Techniques to obtain a geometric representation of bone contours from CT scans of vertebrae and construct a hexahedral mesh from the contours were developed. An automated edge detection technique was developed to identify surface contours of the vertebrae, followed by atlas based B-spline curve fitting to construct curves from the edge points. The method was automatic and robust to missing data, with a controllable degree of smoothing and interpolation. Parametric mapping was then used to generate nodes for each CT slice, which were connected between slices to obtain a hexahedral mesh. This method could be adapted for modelling a variety of orthopaedic structures. PMID:19308870

  16. CT Scan as an Essential Tool in Diagnosis of Non-radiopaque Sialoliths.

    PubMed

    Kalia, Vimal; Kalra, Geeta; Kaur, Supreet; Kapoor, Rajeev

    2015-03-01

    Sialolithiasis is the second most common disease of the salivary glands and the main cause of salivary gland obstruction. Diagnosis of calculi/sialoliths can be made by means of an elaborate history, precise clinical examination and radiographic support. But all sialoliths do not present with predictable signs and symptoms and radiographic appearance. Sialoliths have a variety of manifestations and they may or may not be radiopaque. Non-radiopaque sialoliths are difficult to diagnose radiographically. Although newer techniques like CBCT, CT virtual sialandoscopy and established techniques like sialography, xeroradiography can be useful in selected cases. A regular CT scan is an excellent tool in the diagnosis of a non-radiopaque sialolith and associated salivary gland changes. CT scan should be considered as an important tool of imaging for diagnosis, treatment planning and follow-up of all cases of sialoliths and associated pathologies of the salivary gland. PMID:25838703

  17. Pancreatic Cancer Tumor Size on CT Scan Versus Pathologic Specimen: Implications for Radiation Treatment Planning

    SciTech Connect

    Arvold, Nils D.; Niemierko, Andrzej; Mamon, Harvey J.; Hong, Theodore S.

    2011-08-01

    Purpose: Pancreatic cancer primary tumor size measurements are often discordant between computed tomography (CT) and pathologic specimen after resection. Dimensions of the primary tumor are increasingly relevant in an era of highly conformal radiotherapy. Methods and Materials: We retrospectively evaluated 97 consecutive patients with resected pancreatic cancer at two Boston hospitals. All patients had CT scans before surgical resection. Primary endpoints were maximum dimension (in millimeters) of the primary tumor in any direction as reported by the radiologist on CT and by the pathologist for the resected gross fresh specimen. Endoscopic ultrasound (EUS) findings were analyzed if available. Results: Of the patients, 87 (90%) had preoperative CT scans available for review and 46 (47%) had EUS. Among proximal tumors (n = 69), 40 (58%) had pathologic duodenal invasion, which was seen on CT in only 3 cases. The pathologic tumor size was a median of 7 mm larger compared with CT size for the same patient (range, -15 to 43 mm; p < 0.0001), with 73 patients (84%) having a primary tumor larger on pathology than CT. Endoscopic ultrasound was somewhat more accurate, with pathologic tumor size being a median of only 5 mm larger compared with EUS size (range, -15 to 35 mm; p = 0.0003). Conclusions: Computed tomography scans significantly under-represent pancreatic cancer tumor size compared with pathologic specimens in resectable cases. We propose a clinical target volume expansion formula for the primary tumor based on our data. The high rate of pathologic duodenal invasion suggests a risk of duodenal undercoverage with highly conformal radiotherapy.

  18. "High-precision, reconstructed 3D model" of skull scanned by conebeam CT: Reproducibility verified using CAD/CAM data.

    PubMed

    Katsumura, Seiko; Sato, Keita; Ikawa, Tomoko; Yamamura, Keiko; Ando, Eriko; Shigeta, Yuko; Ogawa, Takumi

    2016-01-01

    Computed tomography (CT) scanning has recently been introduced into forensic medicine and dentistry. However, the presence of metal restorations in the dentition can adversely affect the quality of three-dimensional reconstruction from CT scans. In this study, we aimed to evaluate the reproducibility of a "high-precision, reconstructed 3D model" obtained from a conebeam CT scan of dentition, a method that might be particularly helpful in forensic medicine. We took conebeam CT and helical CT images of three dry skulls marked with 47 measuring points; reconstructed three-dimensional images; and measured the distances between the points in the 3D images with a computer-aided design/computer-aided manufacturing (CAD/CAM) marker. We found that in comparison with the helical CT, conebeam CT is capable of reproducing measurements closer to those obtained from the actual samples. In conclusion, our study indicated that the image-reproduction from a conebeam CT scan was more accurate than that from a helical CT scan. Furthermore, the "high-precision reconstructed 3D model" facilitates reliable visualization of full-sized oral and maxillofacial regions in both helical and conebeam CT scans. PMID:26832374

  19. Analysis of chromosome translocation frequency after a single CT scan in adults.

    PubMed

    Abe, Yu; Miura, Tomisato; Yoshida, Mitsuaki A; Ujiie, Risa; Kurosu, Yumiko; Kato, Nagisa; Katafuchi, Atsushi; Tsuyama, Naohiro; Kawamura, Fumihiko; Ohba, Takashi; Inamasu, Tomoko; Shishido, Fumio; Noji, Hideyoshi; Ogawa, Kazuei; Yokouchi, Hiroshi; Kanazawa, Kenya; Ishida, Takashi; Muto, Satoshi; Ohsugi, Jun; Suzuki, Hiroyuki; Ishikawa, Tetsuo; Kamiya, Kenji; Sakai, Akira

    2016-06-01

    We recently reported an increase in dicentric chromosome (DIC) formation after a single computed tomography (CT) scan (5.78-60.27 mSv: mean 24.24 mSv) and we recommended analysis of 2000 metaphase cells stained with Giemsa and centromere-FISH for dicentric chromosome assay (DCA) in cases of low-dose radiation exposure. In the present study, we analyzed the frequency of chromosome translocations using stored Carnoy's-fixed lymphocyte specimens from the previous study; these specimens were from 12 patients who were subject to chromosome painting of Chromosomes 1, 2 and 4. Chromosomes 1, 2 and 4 were analyzed in ∼5000 cells, which is equivalent to the whole-genome analysis of almost 2000 cells. The frequency of chromosome translocation was higher than the number of DICs formed, both before and after CT scanning. The frequency of chromosome translocations tended to be higher, but not significantly higher, in patients with a treatment history compared with patients without such a history. However, in contrast to the results for DIC formation, the frequency of translocations detected before and after the CT scan did not differ significantly. Therefore, analysis of chromosome translocation may not be a suitable assay for detecting chromosome aberrations in cases of low-dose radiation exposure from a CT scan. A significant increase in the frequency of chromosome translocations was not likely to be detected due to the high baseline before the CT scan; the high and variable frequency of translocations was probably due to multiple confounding factors in adults. PMID:26874116

  20. Analysis of chromosome translocation frequency after a single CT scan in adults

    PubMed Central

    Abe, Yu; Miura, Tomisato; Yoshida, Mitsuaki A.; Ujiie, Risa; Kurosu, Yumiko; Kato, Nagisa; Katafuchi, Atsushi; Tsuyama, Naohiro; Kawamura, Fumihiko; Ohba, Takashi; Inamasu, Tomoko; Shishido, Fumio; Noji, Hideyoshi; Ogawa, Kazuei; Yokouchi, Hiroshi; Kanazawa, Kenya; Ishida, Takashi; Muto, Satoshi; Ohsugi, Jun; Suzuki, Hiroyuki; Ishikawa, Tetsuo; Kamiya, Kenji; Sakai, Akira

    2016-01-01

    We recently reported an increase in dicentric chromosome (DIC) formation after a single computed tomography (CT) scan (5.78–60.27 mSv: mean 24.24 mSv) and we recommended analysis of 2000 metaphase cells stained with Giemsa and centromere-FISH for dicentric chromosome assay (DCA) in cases of low-dose radiation exposure. In the present study, we analyzed the frequency of chromosome translocations using stored Carnoy's-fixed lymphocyte specimens from the previous study; these specimens were from 12 patients who were subject to chromosome painting of Chromosomes 1, 2 and 4. Chromosomes 1, 2 and 4 were analyzed in ∼5000 cells, which is equivalent to the whole-genome analysis of almost 2000 cells. The frequency of chromosome translocation was higher than the number of DICs formed, both before and after CT scanning. The frequency of chromosome translocations tended to be higher, but not significantly higher, in patients with a treatment history compared with patients without such a history. However, in contrast to the results for DIC formation, the frequency of translocations detected before and after the CT scan did not differ significantly. Therefore, analysis of chromosome translocation may not be a suitable assay for detecting chromosome aberrations in cases of low-dose radiation exposure from a CT scan. A significant increase in the frequency of chromosome translocations was not likely to be detected due to the high baseline before the CT scan; the high and variable frequency of translocations was probably due to multiple confounding factors in adults. PMID:26874116

  1. Variation compensation and analysis on diaphragm curvature analysis for emphysema quantification on whole lung CT scans

    NASA Astrophysics Data System (ADS)

    Keller, Brad M.; Reeves, Anthony P.; Barr, R. Graham; Yankelevitz, David F.; Henschke, Claudia I.

    2010-03-01

    CT scans allow for the quantitative evaluation of the anatomical bases of emphysema. Recently, a non-density based geometric measurement of lung diagphragm curvature has been proposed as a method for the quantification of emphysema from CT. This work analyzes variability of diaphragm curvature and evaluates the effectiveness of a compensation methodology for the reduction of this variability as compared to emphysema index. Using a dataset of 43 scan-pairs with less than a 100 day time-interval between scans, we find that the diaphragm curvature had a trend towards lower overall variability over emphysema index (95% CI:-9.7 to + 14.7 vs. -15.8 to +12.0), and that the variation of both measures was reduced after compensation. We conclude that the variation of the new measure can be considered comparable to the established measure and the compensation can reduce the apparent variation of quantitative measures successfully.

  2. Stereolithographic vascular replicas from CT scans: choosing treatment strategies, teaching, and research from live patient scan data.

    PubMed

    Knox, Kimberly; Kerber, Charles W; Singel, Soren A; Bailey, Michael J; Imbesi, Steven G

    2005-01-01

    Our goal was to develop a system that would allow us to recreate live patient arterial pathology by using an industrial technique known as stereolithography (or rapid prototyping). In industry, drawings rendered into dicom files can be exported to a computer programmed to drive various industrial tools. Those tools then make a 3D structure shown by the original drawings. We manipulated CT scan dicom files to drive a stereolithography machine and were able to make replicas of the vascular diseases of three patients. PMID:15956511

  3. Laryngeal carcinoma: high-resolution computed tomography and thick anatomic sections

    SciTech Connect

    Reid, M.H.

    1984-06-01

    High-resolution 2-mm thick sequential CT scans of 23 patients with primary laryngeal carcinoma were reviewed to judge the value of CT in early tumor detection and the ability of CT to establish tumor extent reliably, particularly early cartilage invasion. In tumors large enough to be imaged, there were no false negatives. False-positive results for clearly identified tumors were related to the interpretation of tumor on CT where only edema was present at surgery. Both early and gross cartilage invasion were well correlated with surgically resected specimen sections. Early cartilage involvement by tumor can be detected by the development of a fenestrated chrondral margin. Other benign expansive cartilage processes, such as occur with chondromas, have calcified cartilage fragment distributions that are out of proportion to any soft-tissue mass present.

  4. 18F-Fluorodeoxyglucose Positron Emission Tomography/CT Scanning in Diagnosing Vascular Prosthetic Graft Infection

    PubMed Central

    Saleem, Ben R.; Pol, Robert A.; Slart, Riemer H. J. A.; Reijnen, Michel M. P. J.; Zeebregts, Clark J.

    2014-01-01

    Vascular prosthetic graft infection (VPGI) is a severe complication after vascular surgery. CT-scan is considered the diagnostic tool of choice in advanced VPGI. The incidence of a false-negative result using CT is relatively high, especially in the presence of low-grade infections. 18F-fluorodeoxyglucose positron emission tomography (18F-FDG PET) scanning has been suggested as an alternative for the diagnosis and assessment of infectious processes. Hybrid 18F-FDG PET/CT has established the role of 18F-FDG PET for the assessment of suspected VPGI, providing accurate anatomic localization of the site of infection. However, there are no clear guidelines for the interpretation of the uptake patterns of 18F-FDG as clinical tool for VPGI. Based on the available literature it is suggested that a linear, diffuse, and homogeneous uptake should not be regarded as an infection whereas focal or heterogeneous uptake with a projection over the vessel on CT is highly suggestive of infection. Nevertheless, 18F-FDG PET and 18F-FDG PET/CT can play an important role in the detection of VPGI and monitoring response to treatment. However an accurate uptake and pattern recognition is warranted and cut-off uptake values and patterns need to be standardized before considering the technique to be the new standard. PMID:25210712

  5. High Resolution Formaldehyde Photochemistry

    NASA Astrophysics Data System (ADS)

    Ernest, C. T.; Bauer, D.; Hynes, A. J.

    2010-12-01

    Formaldehyde (HCHO) is the most abundant and most important organic carbonyl compound in the atmosphere. The sources of formaldehyde are the oxidation of methane, isoprene, acetone, and other volatile organic compounds (VOCs); fossil fuel combustion; and biomass burning. The dominant loss mechanism for formaldehyde is photolysis which occurs via two pathways: (R1) HCHO + hv → HCO + H (R2) HCHO + hv → H2 + CO The first pathway (R1) is referred to as the radical channel, while the second pathway (R2) is referred to as the molecular channel. The products of both pathways play a significant role in atmospheric chemistry. The CO that is produced in the molecular channel undergoes further oxidation to produce CO2. Under atmospheric conditions, the H atom and formyl radical that are produced in the radical channel undergo rapid reactions with O2 to produce the hydroperoxyl radical (HO2) via (R3) and (R4). (R3) HCO + O2 → HO2 + CO (R4) H + O2 → HO2 Thus, for every photon absorbed, the photolysis of formaldehyde can contribute one CO2 molecule to the global greenhouse budget or two HO2 radicals to the tropospheric HOx (OH + HO2) cycle. The HO2 radicals produced during formaldehyde photolysis have also been implicated in the formation of photochemical smog. The HO2 radicals act as radical chain carriers and convert NO to NO2, which ultimately results in the catalytic production of O3. Constraining the yield of HO2 produced via HCHO photolysis is essential for improving tropospheric chemistry models. In this study, both the absorption cross section and the quantum yield of the radical channel (R1) were measured at high resolution over the tropospherically relevant wavelength range 304-330 nm. For the cross section measurements a narrow linewidth Nd:YAG pumped dye laser was used with a multi-pass cell. Partial pressures of HCHO were kept below 0.3 torr. Simultaneous measurement of OH LIF in a flame allowed absolute calibration of the wavelength scale. Pressure

  6. Direct observation and analysis of yolk-shell materials using low-voltage high-resolution scanning electron microscopy: Nanometal-particles encapsulated in metal-oxide, carbon, and polymer

    SciTech Connect

    Asahina, Shunsuke; Suga, Mitsuo; Takahashi, Hideyuki; Young Jeong, Hu; Terasaki, Osamu E-mail: terasaki@kaist.ac.kr

    2014-11-01

    Nanometal particles show characteristic features in chemical and physical properties depending on their sizes and shapes. For keeping and further enhancing their features, the particles should be protected from coalescence or degradation. One approach is to encapsulate the nanometal particles inside pores with chemically inert or functional materials, such as carbon, polymer, and metal oxides, which contain mesopores to allow permeation of only chemicals not the nanometal particles. Recently developed low-voltage high-resolution scanning electron microscopy was applied to the study of structural, chemical, and electron state of both nanometal particles and encapsulating materials in yolk-shell materials of Au@C, Ru/Pt@C, Au@TiO{sub 2}, and Pt@Polymer. Progresses in the following categories were shown for the yolk-shell materials: (i) resolution of topographic image contrast by secondary electrons, of atomic-number contrast by back-scattered electrons, and of elemental mapping by X-ray energy dispersive spectroscopy; (ii) sample preparation for observing internal structures; and (iii) X-ray spectroscopy such as soft X-ray emission spectroscopy. Transmission electron microscopy was also used for characterization of Au@C.

  7. Morphometric and high resolution scanning electron microscopy analysis of low-level laser therapy and latex protein (Hevea brasiliensis) administration following a crush injury of the sciatic nerve in rats.

    PubMed

    Dias, Fernando J; Issa, João Paulo M; Coutinho-Netto, Joaquim; Fazan, Valéria P S; Sousa, Luiz Gustavo; Iyomasa, Mamie M; Papa, Paula C; Watanabe, Ii-Sei

    2015-02-15

    This study evaluated the effect of low-level laser therapy (LLLT; 15 J/cm(2)) and a latex protein (F1) on a crush injury of the sciatic (ischiadicus) nerve. Seventy-two rats (male, 250 g) were divided into 6 groups: CG, control; EG, exposed nerve; IG, injured nerve without treatment; LG, injured nerve with LLLT; HG, injured nerve with F1; and LHG, injured nerve with LLLT and F1. After 4 or 8 weeks, the animals were euthanized and samples of the sciatic nerve were collected for morphometric and high-resolution scanning electron microscopy (HRSEM) analysis. After 4 weeks, the morphometry revealed improvements in the treated animals, and the HG appeared to be the most similar to the CG; after 8 weeks, the injured groups showed improvements compared to the previous period, and the results of the treatment groups were more similar to one another. At HRSEM after 4 weeks, the treated groups were similar and showed improvement compared to the IG; after 8 weeks, the LHG and HG had the best results. In conclusion, the treatments resulted in improvement after the nerve injury, and this recovery was time-dependent. In addition, the use of the F1 resulted in the best morphometric and ultrastructural findings. PMID:25619570

  8. MECP2 mutations in Czech patients with Rett syndrome and Rett-like phenotypes: novel mutations, genotype-phenotype correlations and validation of high-resolution melting analysis for mutation scanning.

    PubMed

    Zahorakova, Daniela; Lelkova, Petra; Gregor, Vladimir; Magner, Martin; Zeman, Jiri; Martasek, Pavel

    2016-07-01

    Rett syndrome (RTT) is an X-linked neurodevelopmental disorder characterized by developmental regression with loss of motor, communication and social skills, onset of stereotypic hand movements and often seizures. RTT is primarily caused by de novo mutations in the methyl-CpG-binding protein 2 gene (MECP2). We established a high-resolution melting (HRM) technique for mutation scanning of the MECP2 gene and performed analyses in Czech patients with RTT, autism spectrum conditions and intellectual disability with Rett-like features. In the cases with confirmed MECP2 mutations, we determined X-chromosome inactivation (XCI), examined the relationships between genotype and clinical severity and evaluated the modifying influence of XCI. Our results demonstrate that HRM analysis is a reliable method for the detection of point mutations, small deletions and duplications in the MECP2 gene. We identified 29 pathogenic mutations in 75 girls, including four novel mutations: c.155_1189del1035;909_932inv;insC, c.573delC, c.857_858dupAA and c.1163_1200del38. Skewed XCI (ratio >75%) was found in 19.3% of the girls, but no gross divergence in clinical severity was observed. Our findings confirm a high mutation frequency in classic RTT (92%) and a correlation between the MECP2 mutation type and clinical severity. We also demonstrate limitations of XCI in explaining all of the phenotypic differences in RTT. PMID:26984561

  9. Automatic detection of axillary lymphadenopathy on CT scans of untreated chronic lymphocytic leukemia patients

    NASA Astrophysics Data System (ADS)

    Liu, Jiamin; Hua, Jeremy; Chellappa, Vivek; Petrick, Nicholas; Sahiner, Berkman; Farooqui, Mohammed; Marti, Gerald; Wiestner, Adrian; Summers, Ronald M.

    2012-03-01

    Patients with chronic lymphocytic leukemia (CLL) have an increased frequency of axillary lymphadenopathy. Pretreatment CT scans can be used to upstage patients at the time of presentation and post-treatment CT scans can reduce the number of complete responses. In the current clinical workflow, the detection and diagnosis of lymph nodes is usually performed manually by examining all slices of CT images, which can be time consuming and highly dependent on the observer's experience. A system for automatic lymph node detection and measurement is desired. We propose a computer aided detection (CAD) system for axillary lymph nodes on CT scans in CLL patients. The lung is first automatically segmented and the patient's body in lung region is extracted to set the search region for lymph nodes. Multi-scale Hessian based blob detection is then applied to detect potential lymph nodes within the search region. Next, the detected potential candidates are segmented by fast level set method. Finally, features are calculated from the segmented candidates and support vector machine (SVM) classification is utilized for false positive reduction. Two blobness features, Frangi's and Li's, are tested and their free-response receiver operating characteristic (FROC) curves are generated to assess system performance. We applied our detection system to 12 patients with 168 axillary lymph nodes measuring greater than 10 mm. All lymph nodes are manually labeled as ground truth. The system achieved sensitivities of 81% and 85% at 2 false positives per patient for Frangi's and Li's blobness, respectively.

  10. Comparison of demons deformable registration-based methods for texture analysis of serial thoracic CT scans

    NASA Astrophysics Data System (ADS)

    Cunliffe, Alexandra R.; Al-Hallaq, Hania A.; Fei, Xianhan M.; Tuohy, Rachel E.; Armato, Samuel G.

    2013-02-01

    To determine how 19 image texture features may be altered by three image registration methods, "normal" baseline and follow-up computed tomography (CT) scans from 27 patients were analyzed. Nineteen texture feature values were calculated in over 1,000 32x32-pixel regions of interest (ROIs) randomly placed in each baseline scan. All three methods used demons registration to map baseline scan ROIs to anatomically matched locations in the corresponding transformed follow-up scan. For the first method, the follow-up scan transformation was subsampled to achieve a voxel size identical to that of the baseline scan. For the second method, the follow-up scan was transformed through affine registration to achieve global alignment with the baseline scan. For the third method, the follow-up scan was directly deformed to the baseline scan using demons deformable registration. Feature values in matched ROIs were compared using Bland- Altman 95% limits of agreement. For each feature, the range spanned by the 95% limits was normalized to the mean feature value to obtain the normalized range of agreement, nRoA. Wilcoxon signed-rank tests were used to compare nRoA values across features for the three methods. Significance for individual tests was adjusted using the Bonferroni method. nRoA was significantly smaller for affine-registered scans than for the resampled scans (p=0.003), indicating lower feature value variability between baseline and follow-up scan ROIs using this method. For both of these methods, however, nRoA was significantly higher than when feature values were calculated directly on demons-deformed followup scans (p<0.001). Across features and methods, nRoA values remained below 26%.

  11. Computed Tomography (CT) Scanning Facilitates Early Identification of Neonatal Cystic Fibrosis Piglets

    PubMed Central

    Guillon, Antoine; Chevaleyre, Claire; Barc, Celine; Berri, Mustapha; Adriaensen, Hans; Lecompte, François; Villemagne, Thierry; Pezant, Jérémy; Delaunay, Rémi; Moënne-Loccoz, Joseph; Berthon, Patricia; Bähr, Andrea; Wolf, Eckhard; Klymiuk, Nikolai; Attucci, Sylvie; Ramphal, Reuben; Sarradin, Pierre; Buzoni-Gatel, Dominique; Si-Tahar, Mustapha; Caballero, Ignacio

    2015-01-01

    Background Cystic Fibrosis (CF) is the most prevalent autosomal recessive disease in the Caucasian population. A cystic fibrosis transmembrane conductance regulator knockout (CFTR-/-) pig that displays most of the features of the human CF disease has been recently developed. However, CFTR-/- pigs presents a 100% prevalence of meconium ileus that leads to death in the first hours after birth, requiring a rapid diagnosis and surgical intervention to relieve intestinal obstruction. Identification of CFTR-/- piglets is usually performed by PCR genotyping, a procedure that lasts between 4 to 6 h. Here, we aimed to develop a procedure for rapid identification of CFTR-/- piglets that will allow placing them under intensive care soon after birth and immediately proceeding with the surgical correction. Methods and Principal Findings Male and female CFTR+/- pigs were crossed and the progeny was examined by computed tomography (CT) scan to detect the presence of meconium ileus and facilitate a rapid post-natal surgical intervention. Genotype was confirmed by PCR. CT scan presented a 94.4% sensitivity to diagnose CFTR-/- piglets. Diagnosis by CT scan reduced the birth-to-surgery time from a minimum of 10 h down to a minimum of 2.5 h and increased the survival of CFTR-/- piglets to a maximum of 13 days post-surgery as opposed to just 66 h after later surgery. Conclusion CT scan imaging of meconium ileus is an accurate method for rapid identification of CFTR-/- piglets. Early CT detection of meconium ileus may help to extend the lifespan of CFTR-/- piglets and, thus, improve experimental research on CF, still an incurable disease. PMID:26600426

  12. High resolution time interval meter

    DOEpatents

    Martin, A.D.

    1986-05-09

    Method and apparatus are provided for measuring the time interval between two events to a higher resolution than reliability available from conventional circuits and component. An internal clock pulse is provided at a frequency compatible with conventional component operating frequencies for reliable operation. Lumped constant delay circuits are provided for generating outputs at delay intervals corresponding to the desired high resolution. An initiation START pulse is input to generate first high resolution data. A termination STOP pulse is input to generate second high resolution data. Internal counters count at the low frequency internal clock pulse rate between the START and STOP pulses. The first and second high resolution data are logically combined to directly provide high resolution data to one counter and correct the count in the low resolution counter to obtain a high resolution time interval measurement.

  13. Raman and CT scan mapping of chalcogenide glass diffusion generated gradient index profiles

    NASA Astrophysics Data System (ADS)

    Lindberg, G. P.; Berg, R. H.; Deegan, J.; Benson, R.; Salvaggio, P. S.; Gross, N.; Weinstein, B. A.; Gibson, D.; Bayya, S.; Sanghera, J.; Nguyen, V.; Kotov, M.

    2016-05-01

    Metrology of a gradient index (GRIN) material is non-trivial, especially in the realm of infrared and large refractive index. Traditional methods rely on index matching fluids which are not available for indexes as high as those found in the chalcogenide glasses (2.4-3.2). By diffusing chalcogenide glasses of similar composition one can blend the properties in a continuous way. In an effort to measure this we will present data from both x-ray computed tomography scans (CT scans) and Raman mapping scans of the diffusion profiles. Proof of concept measurements on undiffused bonded sheets of chalcogenide glasses were presented previously. The profiles measured will be of axially stacked sheets of chalcogenide glasses diffused to create a linear GRIN profile and nested tubes of chalcogenide glasses diffused to create a radial parabolic GRIN profile. We will show that the x-ray absorption in the CT scan and the intensity of select Raman peaks spatially measured through the material are indicators of the concentration of the diffusion ions and correlate to the spatial change in refractive index. We will also present finite element modeling (FEM) results and compare them to post precision glass molded (PGM) elements that have undergone CT and Raman mapping.

  14. Leukemia and brain tumors among children after radiation exposure from CT scans: design and methodological opportunities of the Dutch Pediatric CT Study.

    PubMed

    Meulepas, Johanna M; Ronckers, Cécile M; Smets, Anne M J B; Nievelstein, Rutger A J; Jahnen, Andreas; Lee, Choonsik; Kieft, Mariëtte; Laméris, Johan S; van Herk, Marcel; Greuter, Marcel J W; Jeukens, Cécile R L P N; van Straten, Marcel; Visser, Otto; van Leeuwen, Flora E; Hauptmann, Michael

    2014-04-01

    Computed tomography (CT) scans are indispensable in modern medicine; however, the spectacular rise in global use coupled with relatively high doses of ionizing radiation per examination have raised radiation protection concerns. Children are of particular concern because they are more sensitive to radiation-induced cancer compared with adults and have a long lifespan to express harmful effects which may offset clinical benefits of performing a scan. This paper describes the design and methodology of a nationwide study, the Dutch Pediatric CT Study, regarding risk of leukemia and brain tumors in children after radiation exposure from CT scans. It is a retrospective record-linkage cohort study with an expected number of 100,000 children who received at least one electronically archived CT scan covering the calendar period since the introduction of digital archiving until 2012. Information on all archived CT scans of these children will be obtained, including date of examination, scanned body part and radiologist's report, as well as the machine settings required for organ dose estimation. We will obtain cancer incidence by record linkage with external databases. In this article, we describe several approaches to the collection of data on archived CT scans, the estimation of radiation doses and the assessment of confounding. The proposed approaches provide useful strategies for data collection and confounder assessment for general retrospective record-linkage studies, particular those using hospital databases on radiological procedures for the assessment of exposure to ionizing or non-ionizing radiation. PMID:24748424

  15. Ultra-Low Dose Lung CT Perfusion Regularized by a Previous Scan

    PubMed Central

    Yu, Hengyong; Zhao, Shiying; Hoffman, Eric A.; Wang, Ge

    2009-01-01

    Rationale and Objectives Our previous scan regularized reconstruction (PSRR) method is proposed to reduce radiation dose and applied for lung perfusion studies. The normal and ultra-low dose lung CT perfusion studies are compared in terms of estimation accuracy of pulmonary functional parameters. Materials and Methods A sequences of sheep lung scans were performed in three prone, anesthetized sheep at normal and ultra-low doses. A scan protocol was developed for the ultra-low dose studies with ECG gating - time point one for a normal x-ray dose scan (100kV/150mAs) and time points 2–21 for low dose scans (80kV/17mAs). A nonlinear diffusion-based post-filtering (NDPF) method was applied to the difference images between the low-dose images and the high-quality reference image. The final images at 20 time points were generated by fusing the reference image with the filtered difference images. Results The power spectra of perfusion images and coherences with the normal scans show a great improvement in image quality of the ultra-low dose scans with PSRR relative to that without RSRR. The Gamma variate-fitting and the repeatability of the measurements of the mean transit time demonstrate that the key parameters of lung functions can be reliably accessed using PSRR. The variability of the ultra-low dose scan results obtained using PSRR is not substantially different from that between two normal dose scans. Conclusions Our studies have shown that a ~90% reduction in radiation dose is achievable using PSRR without compromising the quantitative CT measurements of regional lung functions. PMID:19201366

  16. TU-F-18A-06: Dual Energy CT Using One Full Scan and a Second Scan with Very Few Projections

    SciTech Connect

    Wang, T; Zhu, L

    2014-06-15

    Purpose: The conventional dual energy CT (DECT) requires two full CT scans at different energy levels, resulting in dose increase as well as imaging errors from patient motion between the two scans. To shorten the scan time of DECT and thus overcome these drawbacks, we propose a new DECT algorithm using one full scan and a second scan with very few projections by preserving structural information. Methods: We first reconstruct a CT image on the full scan using a standard filtered-backprojection (FBP) algorithm. We then use a compressed sensing (CS) based iterative algorithm on the second scan for reconstruction from very few projections. The edges extracted from the first scan are used as weights in the Objectives: function of the CS-based reconstruction to substantially improve the image quality of CT reconstruction. The basis material images are then obtained by an iterative image-domain decomposition method and an electron density map is finally calculated. The proposed method is evaluated on phantoms. Results: On the Catphan 600 phantom, the CT reconstruction mean error using the proposed method on 20 and 5 projections are 4.76% and 5.02%, respectively. Compared with conventional iterative reconstruction, the proposed edge weighting preserves object structures and achieves a better spatial resolution. With basis materials of Iodine and Teflon, our method on 20 projections obtains similar quality of decomposed material images compared with FBP on a full scan and the mean error of electron density in the selected regions of interest is 0.29%. Conclusion: We propose an effective method for reducing projections and therefore scan time in DECT. We show that a full scan plus a 20-projection scan are sufficient to provide DECT images and electron density with similar quality compared with two full scans. Our future work includes more phantom studies to validate the performance of our method.

  17. Reconstruction of a time-averaged midposition CT scan for radiotherapy planning of lung cancer patients using deformable registration

    SciTech Connect

    Wolthaus, J. W. H.; Sonke, J.-J.; Herk, M. van; Damen, E. M. F.

    2008-09-15

    Purpose: lower lobe lung tumors move with amplitudes of up to 2 cm due to respiration. To reduce respiration imaging artifacts in planning CT scans, 4D imaging techniques are used. Currently, we use a single (midventilation) frame of the 4D data set for clinical delineation of structures and radiotherapy planning. A single frame, however, often contains artifacts due to breathing irregularities, and is noisier than a conventional CT scan since the exposure per frame is lower. Moreover, the tumor may be displaced from the mean tumor position due to hysteresis. The aim of this work is to develop a framework for the acquisition of a good quality scan representing all scanned anatomy in the mean position by averaging transformed (deformed) CT frames, i.e., canceling out motion. A nonrigid registration method is necessary since motion varies over the lung. Methods and Materials: 4D and inspiration breath-hold (BH) CT scans were acquired for 13 patients. An iterative multiscale motion estimation technique was applied to the 4D CT scan, similar to optical flow but using image phase (gray-value transitions from bright to dark and vice versa) instead. From the (4D) deformation vector field (DVF) derived, the local mean position in the respiratory cycle was computed and the 4D DVF was modified to deform all structures of the original 4D CT scan to this mean position. A 3D midposition (MidP) CT scan was then obtained by (arithmetic or median) averaging of the deformed 4D CT scan. Image registration accuracy, tumor shape deviation with respect to the BH CT scan, and noise were determined to evaluate the image fidelity of the MidP CT scan and the performance of the technique. Results: Accuracy of the used deformable image registration method was comparable to established automated locally rigid registration and to manual landmark registration (average difference to both methods <0.5 mm for all directions) for the tumor region. From visual assessment, the registration was good

  18. Use of an in-field-of-view shield to improve count rate performance of the single crystal layer high-resolution research tomograph PET scanner for small animal brain scans.

    PubMed

    Boellaard, R; de Jong, H W A M; Molthoff, C F M; Buijs, F; Lenox, M; Nutt, R; Lammertsma, A A

    2003-12-01

    The count rate performance of the single LSO crystal layer high-resolution research tomograph (HRRT-S) PET scanner is limited by the processing speed of its electronics. Therefore, the feasibility of using an in-field-of-view (in-FOV) shield to improve the noise equivalent count rates (NECR) for small animal brain studies was investigated. The in-FOV shield consists of a lead tube of 12 cm length, 6 cm inner diameter and 9 mm wall thickness. It is large enough to shield the activity in the body of a rat or mouse. First, the effect of this shield on NECR was studied. Secondly, a number of experiments were performed to assess the effects of the shield on the accuracy of transmission scan data and, next, on reconstructed activity distribution in the brain. For activities below 150 MBq NECR improved only by 5-10%. For higher activities NECR maxima of 1.2E4 cps at 200 MBq and 2.2E4 cps at 370 MBq were found without and with shield, respectively. Listmode data taken without shield, however, were corrupted for activities above 75 MBq due to data overrun problems (time tag losses) of the electronics. When the shield was used data overrun was avoided up to activities of 150 MBq. For the unshielded part of the phantom, transmission scan data were the same with and without shield. The estimated scatter contribution was approximately 8.5% without and 5.5% with shield. Reconstructed emission data showed a difference up to 5% in the unshielded part of the phantom at 5 mm or more from the edge of the shielding. Of this 5% about 3% results from the difference in the uncorrected scatter contribution. In conclusion, an in-FOV shield can be used successfully in an HRRT PET scanner to improve NECR and accuracy of small animal brain studies. The latter is especially important when high activities are required for tracers with low brain uptake or when multiple animals are scanned simultaneously. PMID:14703172

  19. Evolving Bioprosthetic Tissue Calcification Can Be Quantified Using Serial Multislice CT Scanning

    PubMed Central

    Meuris, B.; De Praetere, H.; Coudyzer, W.; Flameng, W.

    2013-01-01

    Background. We investigated the value of serial multislice CT scanning for in vivo determination of evolving tissue calcification in three separate experimental settings. Materials and Methods. Bioprosthetic valve tissue was implanted in three different conditions: (1) glutaraldehyde-fixed porcine stentless conduits in pulmonary position (n = 6); (2) glutaraldehyde-fixed stented pericardial valves in mitral position (n = 3); and (3) glutaraldehyde-fixed pericardial tissue as patch in the jugular vein and carotid artery (n = 16). Multislice CT scanning was performed at various time intervals. Results. In stentless conduits, the distribution of wall calcification can be reliably quantified with CT. After 20 weeks, the CT-determined mean calcium volume was 1831 ± 581 mm³, with a mean wall calcium content of 89.8 ± 44.4 μg/mg (r2 = 0.68). In stented pericardial valves implanted in mitral position, reliable determination of tissue mineralization is disturbed by scattering caused by the (continuously moving) alloy of the stent material. Pericardial patches in the neck vessels revealed progressive mineralization, with a significant increase in mean HU and calcium volume at 8 weeks after implantation, rising up to a level of 131.1 ± 39.6 mm³ (mean calcium volume score) and a mean calcium content of 19.1 ± 12.3 μg/mg. Conclusion. The process of bioprosthetic tissue mineralization can be visualized and quantified in vivo using multislice CT scanning. This allows determination of the kinetics of tissue mineralization with intermediate in vivo evaluations. PMID:24089616

  20. A computational framework for cancer response assessment based on oncological PET-CT scans.

    PubMed

    Sampedro, Frederic; Escalera, Sergio; Domenech, Anna; Carrio, Ignasi

    2014-12-01

    In this work we present a comprehensive computational framework to help in the clinical assessment of cancer response from a pair of time consecutive oncological PET-CT scans. In this scenario, the design and implementation of a supervised machine learning system to predict and quantify cancer progression or response conditions by introducing a novel feature set that models the underlying clinical context is described. Performance results in 100 clinical cases (corresponding to 200 whole body PET-CT scans) in comparing expert-based visual analysis and classifier decision making show up to 70% accuracy within a completely automatic pipeline and 90% accuracy when providing the system with expert-guided PET tumor segmentation masks. PMID:25450224

  1. Intracranial myeloid metaplasia: diagnosis by CT and Fe52 scans and treatment by cranial irradiation

    SciTech Connect

    Cornfield, D.B.; Shipkin, P.; Alavi, A.; Becker, J.; Peyster, R.

    1983-11-01

    A patient with longstanding agnogenic myeloid metaplasia developed a progressive dementia. CT scanning demonstrated multiple intracranial masses, and a Fe/sub 52/ bone marrow scan demonstrated erythroid activity within the masses and confirmed the suspicion of extra-medullary hematopoiesis. A potentially hazardous biopsy was avoided, and a course of cranial irradiation was administered, resulting in regression of the masses and clearing of the patient's dementia. Fe/sub 52/ scintigraphy provides a specific and useful diagnostic approach which may eliminate the need for invasive procedures.

  2. Childhood CT scans and cancer risk: impact of predisposing factors for cancer on the risk estimates.

    PubMed

    Journy, N; Roué, T; Cardis, E; Le Pointe, H Ducou; Brisse, H; Chateil, J-F; Laurier, D; Bernier, M-O

    2016-03-01

    To investigate the role of cancer predisposing factors (PFs) on the associations between paediatric computed tomography (CT) scan exposures and subsequent risk of central nervous system (CNS) tumours and leukaemia. A cohort of children who underwent a CT scan in 2000-2010 in 23 French radiology departments was linked with the national childhood cancers registry and national vital status registry; information on PFs was retrieved through hospital discharge databases. In children without PF, hazard ratios of 1.07 (95% CI 0.99-1.10) for CNS tumours (15 cases) and 1.16 (95% CI 0.77-1.27) for leukaemia (12 cases) were estimated for each 10 mGy increment in CT x-rays organ doses. These estimates were similar to those obtained in the whole cohort. In children with PFs, no positive dose-risk association was observed, possibly related to earlier non-cancer mortality in this group. Our results suggest a modifying effect of PFs on CT-related cancer risks, but need to be confirmed by longer follow-up and other studies. PMID:26878249

  3. High-resolution Imaging Techniques for the Assessment of Osteoporosis

    PubMed Central

    Krug, Roland; Burghardt, Andrew J.; Majumdar, Sharmila; Link, Thomas M.

    2010-01-01

    Synopsis The importance of assessing the bone’s microarchitectural make-up in addition to its mineral density in the context of osteoporosis has been emphasized in a number of publications. The high spatial resolution required to resolve the bone’s microstructure in a clinically feasible scan time is challenging. Currently, the best suited modalities meeting these requirements in vivo are high-resolution peripheral quantitative imaging (HR-pQCT) and magnetic resonance imaging (MRI). Whereas HR-pQCT is limited to peripheral skeleton regions like the wrist and ankle, MRI can also image other sites like the proximal femur but usually with lower spatial resolution. In addition Multidetector-CT has been used for high-resolution imaging of trabecular bone structure, however, the radiation dose is a limiting factor. This article provides an overview of the different modalities, technical requirements and recent developments in this emerging field. Details regarding imaging protocols as well as image post-processing methods for bone structure quantification are discussed. PMID:20609895

  4. Classification of pulmonary emphysema from chest CT scans using integral geometry descriptors

    NASA Astrophysics Data System (ADS)

    van Rikxoort, E. M.; Goldin, J. G.; Galperin-Aizenberg, M.; Brown, M. S.

    2011-03-01

    To gain insight into the underlying pathways of emphysema and monitor the effect of treatment, methods to quantify and phenotype the different types of emphysema from chest CT scans are of crucial importance. Current standard measures rely on density thresholds for individual voxels, which is influenced by inspiration level and does not take into account the spatial relationship between voxels. Measures based on texture analysis do take the interrelation between voxels into account and therefore might be useful for distinguishing different types of emphysema. In this study, we propose to use Minkowski functionals combined with rotation invariant Gaussian features to distinguish between healthy and emphysematous tissue and classify three different types of emphysema. Minkowski functionals characterize binary images in terms of geometry and topology. In 3D, four Minkowski functionals are defined. By varying the threshold and size of neighborhood around a voxel, a set of Minkowski functionals can be defined for each voxel. Ten chest CT scans with 1810 annotated regions were used to train the method. A set of 108 features was calculated for each training sample from which 10 features were selected to be most informative. A linear discriminant classifier was trained to classify each voxel in the lungs into a subtype of emphysema or normal lung. The method was applied to an independent test set of 30 chest CT scans with varying amounts and types of emphysema with 4347 annotated regions of interest. The method is shown to perform well, with an overall accuracy of 95%.

  5. [A case of bronchiolitis obliterans organizing pneumonia: diagnostic utility of bronchoalveolar lavage and CT scan].

    PubMed

    Hyakudo, T; Yoshii, C; Nikaido, Y; Yokosaki, Y; Nagata, N; Nakata, H; Kido, M

    1994-08-01

    A 54-year-old female was admitted to our hospital because of abnormal shadows on chest X-ray at annual checkup. She complained of dyspnea on exertion. Chest X-ray findings showed an increase in density at the bilateral lower lung fields and unclearness of the silhouette of the heart and the diaphragm. CT scan findings revealed irregular opacities of various density with many small cystic changes and air bronchograms and air bronchiolograms. The pulmonary function test showed restrictive ventilatory disturbance and reduced diffusing capacity. BALF findings revealed an increase in the total cell count, an increase in the percentage of lymphocytes and a decrease in the OKT4+/OKT8+ ratio. TBLB specimen showed infiltration of mononuclear cells in alveolar septa and organizing exudate in alveolar ducts. These findings suggested a diagnosis of BOOP rather than IPF, and an open lung biopsy was performed. Open lung biopsy specimen showed obstructive bronchiolitis with polypoid granulation tissue and thickening of alveolar septa with infiltration of mononuclear cells, and she was diagnosed as having BOOP. She responded well to corticosteroid and is free from any abnormalities on chest X-ray, CT scan and pulmonary function test at present. Analysis of BALF and CT scan findings are useful for the differential diagnosis of BOOP and IPF. PMID:7807756

  6. Growth of an Ultrathin Zirconia Film on Pt3Zr Examined by High-Resolution X-ray Photoelectron Spectroscopy, Temperature-Programmed Desorption, Scanning Tunneling Microscopy, and Density Functional Theory

    PubMed Central

    2014-01-01

    Ultrathin (∼3 Å) zirconium oxide films were grown on a single-crystalline Pt3Zr(0001) substrate by oxidation in 1 × 10–7 mbar of O2 at 673 K, followed by annealing at temperatures up to 1023 K. The ZrO2 films are intended to serve as model supports for reforming catalysts and fuel cell anodes. The atomic and electronic structure and composition of the ZrO2 films were determined by synchrotron-based high-resolution X-ray photoelectron spectroscopy (HR-XPS) (including depth profiling), low-energy electron diffraction (LEED), scanning tunneling microscopy (STM), and density functional theory (DFT) calculations. Oxidation mainly leads to ultrathin trilayer (O–Zr–O) films on the alloy; only a small area fraction (10–15%) is covered by ZrO2 clusters (thickness ∼0.5–10 nm). The amount of clusters decreases with increasing annealing temperature. Temperature-programmed desorption (TPD) of CO was utilized to confirm complete coverage of the Pt3Zr substrate by ZrO2, that is, formation of a closed oxide overlayer. Experiments and DFT calculations show that the core level shifts of Zr in the trilayer ZrO2 films are between those of metallic Zr and thick (bulklike) ZrO2. Therefore, the assignment of such XPS core level shifts to substoichiometric ZrOx is not necessarily correct, because these XPS signals may equally well arise from ultrathin ZrO2 films or metal/ZrO2 interfaces. Furthermore, our results indicate that the common approach of calculating core level shifts by DFT including final-state effects should be taken with care for thicker insulating films, clusters, and bulk insulators. PMID:25688293

  7. Validation of the GOSAT Thermal Infrared (TIR) Band using the University of Wisconsin airborne Scanning High-resolution Interferometer Sounder (S-HIS) and ground-based Atmospheric Emitted Radiance Interferometer (AERI) at Railroad Valley, Nevada

    NASA Astrophysics Data System (ADS)

    Knuteson, R.; kuze, A.; Shiomi, K.; Taylor, J. K.; Garms, E.; Roman, J.; Revercomb, H. E.; Tobin, D. C.; Gero, P.; Best, F. A.

    2011-12-01

    We provide a quantitative assessment of the calibration accuracy of the thermal infrared measurements from the Greenhouse Gases Observing SATellite (GOSAT), which was launched on January 23, 2009. Results will be presented comparing the observed emission spectra from the TANSO-FTS sensor onboard GOSAT to coincident observations from high altitude aircraft and ground-based spectrometers during the June 2011 Railroad Valley Vicarious Calibration and Validation campaign. The 2011 campaign was the third in a series of joint Japan/U.S. field measurements to assess the calibration of the GOSAT sensors and validate derived products of carbon dioxide and methane. As part of the 2011 campaign, the University of Wisconsin Scanning High-resolution Interferometer Sounder (S-HIS) successfully overflew Railroad Valley, Nevada onboard the high-altitude NASA ER-2 along with the Airborne Visible/InfraRed Imaging Spectrometer (AVIRIS) and the MODIS/ASTER Airborne Simulator (MASTER). The ER-2 overpass of Railroad Valley on June 20, 2011 was timed to coincide with an overpass of the GOSAT satellite at 21:19 UTC. A joint JPL/UWisc team provided coincident upper air observations of pressure, temperature, and water vapor using Vaisala radiosondes released from the center of the Railroad Valley dry lakebed (playa) for six GOSAT daytime overpasses and three nighttime overpasses between 19-26 June 2011. The University of Wisconsin also made ground-based measurements from the center of the playa during each GOSAT overpass with an Atmospheric Emitted Radiance Interferometer. The AERI was operated from a research vehicle with the capability to measure the upwelling surface radiance at three view angles and the downwelling atmospheric emission at two angles. The ground-based AERI provided accurate surface emissivity and surface temperature for use in forward model calculations of the satellite observed infrared emission between 6 and 17 microns.

  8. Carotid plaque characterization using CT and MRI scans for synergistic image analysis

    NASA Astrophysics Data System (ADS)

    Getzin, Matthew; Xu, Yiqin; Rao, Arhant; Madi, Saaussan; Bahadur, Ali; Lennartz, Michelle R.; Wang, Ge

    2014-09-01

    Noninvasive determination of plaque vulnerability has been a holy grail of medical imaging. Despite advances in tomographic technologies , there is currently no effective way to identify vulnerable atherosclerotic plaques with high sensitivity and specificity. Computed tomography (CT) and magnetic resonance imaging (MRI) are widely used, but neither provides sufficient information of plaque properties. Thus, we are motivated to combine CT and MRI imaging to determine if the composite information can better reflect the histological determination of plaque vulnerability. Two human endarterectomy specimens (1 symptomatic carotid and 1 stable femoral) were imaged using Scanco Medical Viva CT40 and Bruker Pharmascan 16cm 7T Horizontal MRI / MRS systems. μCT scans were done at 55 kVp and tube current of 70 mA. Samples underwent RARE-VTR and MSME pulse sequences to measure T1, T2 values, and proton density. The specimens were processed for histology and scored for vulnerability using the American Heart Association criteria. Single modality-based analyses were performed through segmentation of key imaging biomarkers (i.e. calcification and lumen), image registration, measurement of fibrous capsule, and multi-component T1 and T2 decay modeling. Feature differences were analyzed between the unstable and stable controls, symptomatic carotid and femoral plaque, respectively. By building on the techniques used in this study, synergistic CT+MRI analysis may provide a promising solution for plaque characterization in vivo.

  9. Refractory Epilepsy-MRI, EEG and CT scan, a Correlative Clinical Study

    PubMed Central

    Nikodijevic, Dijana; Baneva–Dolnenec, Natalija; Petrovska-Cvetkovska, Dragana; Caparoska, Daniela

    2016-01-01

    OBJECTIVES: Refractory epilepsies (RE), as well as, the surgically correctable syndromes, are of great interest, since they affect the very young population of children and adolescents. The early diagnosis and treatment are very important in preventing the psychosocial disability. Therefore MRI and EEG are highly sensitive methods in the diagnosis and localization of epileptogenic focus, but also in pre-surgical evaluation of these patients. The aim of our study is to correlate the imaging findings of EEG, MRI and CT scan in refractory symptomatic epilepsies, and to determine their specificity in detecting the epileptogenic focus. METHODS: The study was prospective with duration of over two years, open-labelled, and involved a group of 37 patients that had been evaluated and diagnosed as refractory epilepsy patients. In the evaluation the type and frequency of seizures were considered, together with the etiologic factors and their association, and finally the risk for developing refractory epilepsy was weighted. EEG and MRI findings and CT scan results were evaluated for their specificity and sensitivity in detecting the epileptogenic focus, and the correlation between them was analyzed. RESULTS: Regarding the type of seizures considered in our study, the patients with PCS (partial complex seizures) dominated, as opposed to those with generalized seizures (GS) (D=1.178, p < 0.05). Positive MRI findings were registered in 28 patients (75.7%). Most of them were patients with hippocampal sclerosis, 12 (42.8%), and also they were found to have the highest risk of developing refractory epilepsy (RE) (Odds ratio = 5.7), and the highest association between the etiologic factor and refractory epilepsy (p < 0.01). In detecting the epileptogenic focus, a significant difference was found (p < 0.01) between MRI and CT scan findings, especially in patients with hippocampal sclerosis and cerebral malformations. There was a strong correlation between the MRI findings and the

  10. Potential for Adult-Based Epidemiological Studies to Characterize Overall Cancer Risks Associated with a Lifetime of CT Scans

    PubMed Central

    Shuryak, Igor; Lubin, Jay H.; Brenner, David J.

    2014-01-01

    Recent epidemiological studies have suggested that radiation exposure from pediatric CT scanning is associated with small excess cancer risks. However, the majority of CT scans are performed on adults, and most radiation-induced cancers appear during middle or old age, in the same age range as background cancers. Consequently, a logical next step is to investigate the effects of CT scanning in adulthood on lifetime cancer risks by conducting adult-based, appropriately designed epidemiological studies. Here we estimate the sample size required for such studies to detect CT-associated risks. This was achieved by incorporating different age-, sex-, time- and cancer type-dependent models of radiation carcinogenesis into an in silico simulation of a population-based cohort study. This approach simulated individual histories of chest and abdominal CT exposures, deaths and cancer diagnoses. The resultant sample sizes suggest that epidemiological studies of realistically sized cohorts can detect excess lifetime cancer risks from adult CT exposures. For example, retrospective analysis of CT exposure and cancer incidence data from a population-based cohort of 0.4 to 1.3 million (depending on the carcinogenic model) CT-exposed UK adults, aged 25–65 in 1980 and followed until 2015, provides 80% power for detecting cancer risks from chest and abdominal CT scans. PMID:24828111

  11. Hierarchical pictorial structures for simultaneously localizing multiple organs in volumetric pre-scan CT

    NASA Astrophysics Data System (ADS)

    Montillo, Albert; Song, Qi; Das, Bipul; Yin, Zhye

    2015-03-01

    Parsing volumetric computed tomography (CT) into 10 or more salient organs simultaneously is a challenging task with many applications such as personalized scan planning and dose reporting. In the clinic, pre-scan data can come in the form of very low dose volumes acquired just prior to the primary scan or from an existing primary scan. To localize organs in such diverse data, we propose a new learning based framework that we call hierarchical pictorial structures (HPS) which builds multiple levels of models in a tree-like hierarchy that mirrors the natural decomposition of human anatomy from gross structures to finer structures. Each node of our hierarchical model learns (1) the local appearance and shape of structures, and (2) a generative global model that learns probabilistic, structural arrangement. Our main contribution is twofold. First we embed the pictorial structures approach in a hierarchical framework which reduces test time image interpretation and allows for the incorporation of additional geometric constraints that robustly guide model fitting in the presence of noise. Second we guide our HPS framework with the probabilistic cost maps extracted using random decision forests using volumetric 3D HOG features which makes our model fast to train and fast to apply to novel test data and posses a high degree of invariance to shape distortion and imaging artifacts. All steps require approximate 3 mins to compute and all organs are located with suitably high accuracy for our clinical applications such as personalized scan planning for radiation dose reduction. We assess our method using a database of volumetric CT scans from 81 subjects with widely varying age and pathology and with simulated ultra-low dose cadaver pre-scan data.

  12. National Survey of Radiation Dose and Image Quality in Adult CT Head Scans in Taiwan

    PubMed Central

    Lin, Chung-Jung; Mok, Greta S. P.; Tsai, Mang-Fen; Tsai, Wei-Ta; Yang, Bang-Hung; Tu, Chun-Yuan; Wu, Tung-Hsin

    2015-01-01

    Introduction The purpose of the present study was to evaluate the influence of different variables on radiation dose and image quality based on a national database. Materials and Methods Taiwan’s Ministry of Health and Welfare requested all radiology departments to complete a questionnaire for each of their CT scanners. Information gathered included all scanning parameters for CT head scans. For the present analysis, CT machines were divided into three subgroups: single slice CT (Group A); multi-detector CT (MDCT) with 2-64 slices (Group B); and MDCT with more than 64 slices (Group C). Correlations between computed tomography dose index (CTDI) and signal-to-noise ratio (SNR) with cumulated tube rotation number (CTW(n)) and cumulated tube rotation time (CTW(s)), and sub group analyses of CTDI and SNR across the three groups were performed. Results CTDI values demonstrated a weak correlation (r = 0.33) with CTW(n) in Group A. SNR values demonstrated a weak negative correlation (r = -0.46) with CTW(n) in Group C. MDCT with higher slice numbers used more tube potential resulting in higher effective doses. There were both significantly lower CTDI and SNR values in helical mode than in axial mode in Group B, but not Group C. Conclusion CTW(n) and CTW(s) did not influence radiation output. Helical mode is more often used in MDCT and results in both lower CTDI and SNR compared to axial mode in MDCT with less than 64 slices. PMID:26125549

  13. Experimental Fusion of Contrast Enhanced High-Field Magnetic Resonance Imaging and High-Resolution Micro-Computed Tomography in Imaging the Mouse Inner Ear

    PubMed Central

    Counter, S. Allen; Damberg, Peter; Aski, Sahar Nikkhou; Nagy, Kálmán; Berglin, Cecilia Engmér; Laurell, Göran

    2015-01-01

    Objective: Imaging cochlear, vestibular, and 8th cranial nerve abnormalities remains a challenge. In this study, the membranous and osseous labyrinths of the wild type mouse inner ear were examined using volumetric data from ultra high-field magnetic resonance imaging (MRI) with gadolinium contrast at 9.4 Tesla and high-resolution micro-computed tomography (µCT) to visualize the scalae and vestibular apparatus, and to establish imaging protocols and parameters for comparative analysis of the normal and mutant mouse inner ear. Methods: For in vivo MRI acquisition, animals were placed in a Milleped coil situated in the isocenter of a horizontal 9.4 T Varian magnet. For µCT examination, cone beam scans were performed ex vivo following MRI using the µCT component of a nanoScan PET/CT in vivo scanner. Results: The fusion of Gd enhanced high field MRI and high-resolution µCT scans revealed the dynamic membranous labyrinth of the perilymphatic fluid filled scala tympani and scala vestibule of the cochlea, and semicircular canals of the vestibular apparatus, within the µCT visualized contours of the contiguous osseous labyrinth. The ex vivo µCT segmentation revealed the surface contours and structural morphology of each cochlea turn and the semicircular canals in 3 planes. Conclusions: The fusion of ultra high-field MRI and high-resolution µCT imaging techniques were complementary, and provided high-resolution dynamic and static visualization of the complex morphological features of the normal mouse inner ear structures, which may offer a valuable approach for the investigation of cochlear and vestibular abnormalities that are associated with birth defects related to genetic inner ear disorders in humans. PMID:26401173

  14. A new CT collimator for producing two simultaneous overlapping slices from one scan. [for biomedical applications

    NASA Technical Reports Server (NTRS)

    Kwoh, Y. S.; Glenn, W. V., Jr.; Reed, I. S.; Truong, T. K.

    1981-01-01

    A new CT collimator is developed which is capable of producing two simultaneous successive overlapping images from a single scan. The collimator represents a modification of the standard EMI 5005 collimator achieved by alternately masking one end or portions of both ends of the X-ray detectors at a 13-mm beamwidth so that a set of 540 filtered projections is obtained for each scan which can be separated into two sets of interleaved projections corresponding to views 3 mm apart. Tests have demonstrated that the quality of the images produced from these two projections almost equals the quality of those produced by the standard collimator from two separate scans. The new collimator may thus be used to achieve a speed improvement in the generation of overlapping sections as well as a reduction in X-ray dosage.

  15. The impact of CT scan energy on range calculation in proton therapy planning.

    PubMed

    Grantham, Kevin K; Li, Hua; Zhao, Tianyu; Klein, Eric E

    2015-01-01

    The purpose of this study was to investigate the impact of tube potential (kVp) on the CT number (HU) to proton stopping power ratio (PSPR) conversion. The range and dosimetric change introduced by a mismatch in kVp used for the CT scan and the HU to PSPR table, based on a specific kVp, used to calculate dose are analyzed. Three HU to PSPR curves, corresponding to three kVp settings on the CT scanner, were created. A treatment plan was created for a single beam in a water phantom passing through a wedge-shaped bone heterogeneity. The dose was recalculated by changing only the HU to PSPR table used in the dose calculation. The change in the position of the distal 90% isodose line was recorded as a function of heterogeneity thickness along the beam path. The dosimetric impact of a mismatch in kVp between the CT and the HU to PSPR table was investigated by repeating this procedure for five clinical plans comparing DVH data and dose difference distributions. The HU to PSPR tables diverge for CT numbers greater than 200 HU. In the phantom plan, the divergence of the tables resulted in a difference in range of 1.6 mm per cm of bone in the beam path, for the HU used. For the clinical plans, the dosimetric effect of a kVp mismatch depends on the amount of bone in the beam path and the proximity of OARs to the distal range of the planned beams. A mismatch in kVp between the CT and the HU to PSPR table can introduce inaccuracy in the proton beam range. For dense bone, the measured range difference was approximately 1.6 mm per cm of bone along the beam path. However, the clinical cases analyzed showed a range change of 1 mm or less. Caution is merited when such a mismatch may occur. PMID:26699561

  16. CT Scan Does Not Differentiate Patients with Hepatopulmonary Syndrome from Other Patients with Liver Disease

    PubMed Central

    Prabhudesai, Vikramaditya; Castel, Helene; Gupta, Samir

    2016-01-01

    Background Hepatopulmonary syndrome (HPS) is defined by liver dysfunction, intrapulmonary vascular dilatations, and impaired oxygenation. The gold standard for detection of intrapulmonary vascular dilatations in HPS is contrast echocardiography. However, two small studies have suggested that patients with HPS have larger segmental pulmonary arterial diameters than both normal subjects and normoxemic subjects with cirrhosis, when measured by CT. We sought to compare CT imaging-based pulmonary vasodilatation in patients with HPS, patients with liver dysfunction without HPS, and matching controls on CT imaging. Methods We performed a retrospective cohort study at two quaternary care Canadian HPS centers. We analyzed CT thorax scans in 23 patients with HPS, 29 patients with liver dysfunction without HPS, and 52 gender- and age-matched controls. We measured the artery-bronchus ratios (ABRs) in upper and lower lung zones, calculated the “delta ABR” by subtracting the upper from the lower ABR, compared these measurements between groups, and correlated them with clinically relevant parameters (partial pressure of arterial oxygen, alveolar-arterial oxygen gradient, macroaggregated albumin shunt fraction, and diffusion capacity). We repeated measurements in patients with post-transplant CTs. Results Patients had significantly larger lower zone ABRs and delta ABRs than controls (1.20 +/- 0.19 versus 0.98 +/- 0.10, p<0.01; and 0.12 +/- 0.17 versus -0.06 +/- 0.10, p<0.01, respectively). However, there were no significant differences between liver disease patients with and without HPS, nor any significant correlations between CT measurements and clinically relevant parameters. There were no significant changes in ABRs after liver transplantation (14 patients). Conclusions Basilar segmental artery-bronchus ratios are larger in patients with liver disease than in normal controls, but this vasodilatation is no more severe in patients with HPS. CT does not distinguish patients

  17. Automatic classication of pulmonary function in COPD patients using trachea analysis in chest CT scans

    NASA Astrophysics Data System (ADS)

    van Rikxoort, E. M.; de Jong, P. A.; Mets, O. M.; van Ginneken, B.

    2012-03-01

    Chronic Obstructive Pulmonary Disease (COPD) is a chronic lung disease that is characterized by airflow limitation. COPD is clinically diagnosed and monitored using pulmonary function testing (PFT), which measures global inspiration and expiration capabilities of patients and is time-consuming and labor-intensive. It is becoming standard practice to obtain paired inspiration-expiration CT scans of COPD patients. Predicting the PFT results from the CT scans would alleviate the need for PFT testing. It is hypothesized that the change of the trachea during breathing might be an indicator of tracheomalacia in COPD patients and correlate with COPD severity. In this paper, we propose to automatically measure morphological changes in the trachea from paired inspiration and expiration CT scans and investigate the influence on COPD GOLD stage classification. The trachea is automatically segmented and the trachea shape is encoded using the lengths of rays cast from the center of gravity of the trachea. These features are used in a classifier, combined with emphysema scoring, to attempt to classify subjects into their COPD stage. A database of 187 subjects, well distributed over the COPD GOLD stages 0 through 4 was used for this study. The data was randomly divided into training and test set. Using the training scans, a nearest mean classifier was trained to classify the subjects into their correct GOLD stage using either emphysema score, tracheal shape features, or a combination. Combining the proposed trachea shape features with emphysema score, the classification performance into GOLD stages improved with 11% to 51%. In addition, an 80% accuracy was achieved in distinguishing healthy subjects from COPD patients.

  18. Analysis of calibration materials to improve dual-energy CT scanning for petrophysical applications

    SciTech Connect

    Ayyalasomavaiula, K.; McIntyre, D.; Jain, J.; Singh, J.; Yueh, F.

    2011-01-01

    Dual energy CT-scanning is a rapidly emerging imaging technique employed in non-destructive evaluation of various materials. Although CT (Computerized Tomography) has been used for characterizing rocks and visualizing and quantifying multiphase flow through rocks for over 25 years, most of the scanning is done at a voltage setting above 100 kV for taking advantage of the Compton scattering (CS) effect, which responds to density changes. Below 100 kV the photoelectric effect (PE) is dominant which responds to the effective atomic numbers (Zeff), which is directly related to the photo electric factor. Using the combination of the two effects helps in better characterization of reservoir rocks. The most common technique for dual energy CT-scanning relies on homogeneous calibration standards to produce the most accurate decoupled data. However, the use of calibration standards with impurities increases the probability of error in the reconstructed data and results in poor rock characterization. This work combines ICP-OES (inductively coupled plasma optical emission spectroscopy) and LIBS (laser induced breakdown spectroscopy) analytical techniques to quantify the type and level of impurities in a set of commercially purchased calibration standards used in dual-energy scanning. The Zeff data on the calibration standards with and without impurity data were calculated using the weighted linear combination of the various elements present and used in calculating Zeff using the dual energy technique. Results show 2 to 5% difference in predicted Zeff values which may affect the corresponding log calibrations. The effect that these techniques have on improving material identification data is discussed and analyzed. The workflow developed in this paper will translate to a more accurate material identification estimates for unknown samples and improve calibration of well logging tools.

  19. In vitro dose measurements in a human cadaver with abdomen/pelvis CT scans

    PubMed Central

    Zhang, Da; Padole, Atul; Li, Xinhua; Singh, Sarabjeet; Khawaja, Ranish Deedar Ali; Lira, Diego; Liu, Tianyu; Shi, Jim Q.; Otrakji, Alexi; Kalra, Mannudeep K.; Xu, X. George; Liu, Bob

    2014-01-01

    Purpose: To present a study of radiation dose measurements with a human cadaver scanned on a clinical CT scanner. Methods: Multiple point dose measurements were obtained with high-accuracy Thimble ionization chambers placed inside the stomach, liver, paravertebral gutter, ascending colon, left kidney, and urinary bladder of a human cadaver (183 cm in height and 67.5 kg in weight) whose abdomen/pelvis region was scanned repeatedly with a multidetector row CT. The flat energy response and precision of the dosimeters were verified, and the slight differences in each dosimeter's response were evaluated and corrected to attain high accuracy. In addition, skin doses were measured for radiosensitive organs outside the scanned region with OSL dosimeters: the right eye, thyroid, both nipples, and the right testicle. Three scan protocols were used, which shared most scan parameters but had different kVp and mA settings: 120-kVp automA, 120-kVp 300 mA, and 100-kVp 300 mA. For each protocol three repeated scans were performed. Results: The tube starting angle (TSA) was found to randomly vary around two major conditions, which caused large fluctuations in the repeated point dose measurements: for the 120-kVp 300 mA protocol this angle changed from approximately 110° to 290°, and caused 8% − 25% difference in the point dose measured at the stomach, liver, colon, and urinary bladder. When the fluctuations of the TSA were small (within 5°), the maximum coefficient of variance was approximately 3.3%. The soft tissue absorbed doses averaged from four locations near the center of the scanned region were 27.2 ± 3.3 and 16.5 ± 2.7 mGy for the 120 and 100-kVp fixed-mA scans, respectively. These values were consistent with the corresponding size specific dose estimates within 4%. The comparison of the per-100-mAs tissue doses from the three protocols revealed that: (1) dose levels at nonsuperficial locations in the TCM scans could not be accurately deduced by simply scaling the

  20. In vitro dose measurements in a human cadaver with abdomen/pelvis CT scans

    SciTech Connect

    Zhang, Da; Padole, Atul; Li, Xinhua; Singh, Sarabjeet; Khawaja, Ranish Deedar Ali; Lira, Diego; Shi, Jim Q.; Otrakji, Alexi; Kalra, Mannudeep K.; Liu, Bob; Liu, Tianyu; Xu, X. George

    2014-09-15

    Purpose: To present a study of radiation dose measurements with a human cadaver scanned on a clinical CT scanner. Methods: Multiple point dose measurements were obtained with high-accuracy Thimble ionization chambers placed inside the stomach, liver, paravertebral gutter, ascending colon, left kidney, and urinary bladder of a human cadaver (183 cm in height and 67.5 kg in weight) whose abdomen/pelvis region was scanned repeatedly with a multidetector row CT. The flat energy response and precision of the dosimeters were verified, and the slight differences in each dosimeter's response were evaluated and corrected to attain high accuracy. In addition, skin doses were measured for radiosensitive organs outside the scanned region with OSL dosimeters: the right eye, thyroid, both nipples, and the right testicle. Three scan protocols were used, which shared most scan parameters but had different kVp and mA settings: 120-kVp automA, 120-kVp 300 mA, and 100-kVp 300 mA. For each protocol three repeated scans were performed. Results: The tube starting angle (TSA) was found to randomly vary around two major conditions, which caused large fluctuations in the repeated point dose measurements: for the 120-kVp 300 mA protocol this angle changed from approximately 110° to 290°, and caused 8% − 25% difference in the point dose measured at the stomach, liver, colon, and urinary bladder. When the fluctuations of the TSA were small (within 5°), the maximum coefficient of variance was approximately 3.3%. The soft tissue absorbed doses averaged from four locations near the center of the scanned region were 27.2 ± 3.3 and 16.5 ± 2.7 mGy for the 120 and 100-kVp fixed-mA scans, respectively. These values were consistent with the corresponding size specific dose estimates within 4%. The comparison of the per-100-mAs tissue doses from the three protocols revealed that: (1) dose levels at nonsuperficial locations in the TCM scans could not be accurately deduced by simply scaling the

  1. Regarding the Credibility of Data Showing an Alleged Association of Cancer with Radiation from CT Scans.

    PubMed

    Socol, Yehoshua; Welsh, James S

    2016-02-01

    Computed tomography (CT) scans are of high clinical value as a diagnostic technique, and new applications continue to be identified. However, their application is challenged by emerging concerns regarding carcinogenesis from their radiation. Recent articles made a significant contribution to the above-mentioned concerns by reporting evidence for direct association of the radiation from CT scans with cancer. Such interpretation of the data has already been criticized; there is the possibility of reverse causation due to confounding factors. Nevertheless, such work has had a high impact, with one article being cited more than 300 times from the Web of Science Core Collection within 2 years. However, the data points on cancer relative risk versus CT dose in that article fit straight lines corresponding to the linear no-threshold hypothesis suspiciously well. Here, by applying rigorous statistical analysis, it is shown that the probability of the fit truly being that good or better is only 2%. The results of such studies therefore appear "too good to be true" and the credibility of their conclusions must be questioned. PMID:25616624

  2. Cervical CT scan-guided epidural blood patches for spontaneous intracranial hypotension.

    PubMed

    Maingard, Julian; Giles, Lauren; Marriott, Mark; Phal, Pramit M

    2015-12-01

    We describe two patients with spontaneous intracranial hypotension (SIH), presenting with postural headache due to C1-C2 cerebrospinal fluid (CSF) leak. Both patients were refractory to lumbar epidural blood patching (EBP), and subsequently underwent successful CT scan-guided cervical EBP. SIH affects approximately 1 in 50,000 patients, with females more frequently affected. Its associated features are variable, and as such, misdiagnosis is common. Therefore, imaging plays an important role in the diagnostic workup of SIH and can include MRI of the brain and spine, CT myelogram, and radionuclide cisternography. In patients with an established diagnosis and confirmed CSF leak, symptoms will usually resolve with conservative management. However, in a select subgroup of patients, the symptoms are refractory to medical management and require more invasive therapies. In patients with cervical leaks, EBP in the cervical region is an effective management approach, either in close proximity to, or directly targeting a dural defect. CT scan-guided cervical EBP is an effective treatment approach in refractory SIH, and should be considered in those patients who are refractory to conservative management. PMID:26209918

  3. TH-C-18A-11: Investigating the Minimum Scan Parameters Required to Generate Free-Breathing Fast-Helical CT Scans Without Motion-Artifacts

    SciTech Connect

    Thomas, D; Neylon, J; Dou, T; Jani, S; Lamb, J; Low, D; Tan, J

    2014-06-15

    Purpose: A recently proposed 4D-CT protocol uses deformable registration of free-breathing fast-helical CT scans to generate a breathing motion model. In order to allow accurate registration, free-breathing images are required to be free of doubling-artifacts, which arise when tissue motion is greater than scan speed. This work identifies the minimum scanner parameters required to successfully generate free-breathing fast-helical scans without doubling-artifacts. Methods: 10 patients were imaged under free breathing conditions 25 times in alternating directions with a 64-slice CT scanner using a low dose fast helical protocol. A high temporal resolution (0.1s) 4D-CT was generated using a patient specific motion model and patient breathing waveforms, and used as the input for a scanner simulation. Forward projections were calculated using helical cone-beam geometry (800 projections per rotation) and a GPU accelerated reconstruction algorithm was implemented. Various CT scanner detector widths and rotation times were simulated, and verified using a motion phantom. Doubling-artifacts were quantified in patient images using structural similarity maps to determine the similarity between axial slices. Results: Increasing amounts of doubling-artifacts were observed with increasing rotation times > 0.2s for 16×1mm slice scan geometry. No significant increase in doubling artifacts was observed for 64×1mm slice scan geometry up to 1.0s rotation time although blurring artifacts were observed >0.6s. Using a 16×1mm slice scan geometry, a rotation time of less than 0.3s (53mm/s scan speed) would be required to produce images of similar quality to a 64×1mm slice scan geometry. Conclusion: The current generation of 16 slice CT scanners, which are present in most Radiation Oncology departments, are not capable of generating free-breathing sorting-artifact-free images in the majority of patients. The next generation of CT scanners should be capable of at least 53mm/s scan speed

  4. High resolution computed tomography and MRI for monitoring lung tumor growth in mice undergoing radioimmunotherapy: correlation with histology.

    PubMed

    Kennel, S J; Davis, I A; Branning, J; Pan, H; Kabalka, G W; Paulus, M J

    2000-05-01

    A model lung tumor system has been developed in mice for the evaluation of vascular targeted radioimmunotherapy. In this model, EMT-6 mammary carcinoma tumors growing in the lung are treated with 213Bi, an alpha particle emitter, which is targeted to lung blood vessels using a monoclonal antibody. Smaller tumors (< 100 microm in diameter) are cured, but larger tumors undergo a period of regression and then regrow and ultimately prove lethal. The goal of this work was to determine if external imaging with MRI or CT could be used routinely to monitor the growth/ regression of lung tumors in live mice. To attempt to evaluate individual tumors in vivo, animals were initially imaged with magnetic resonance imaging (MRI). High resolution MRI images could be obtained only after sacrifice when lungs were not moving. In contrast, high resolution computed tomography (CT) produced evaluable images from anesthetized animals. Serial CT images (up to 5/animal) were collected over a 17 day period of tumor growth and treatment. When tumored animals became moribund, animals were sacrificed and lungs were inflated with fixative, embedded in paraffin, and then sectioned serially to compare the detection of tumors by high resolution CT with detection by histology. CT proved most useful in detecting lung tumors located in the hilar area and least useful in detecting serosal surface and anterior lobe tumor foci. Overall, CT images of live animals revealed tumors in approximately 2/3 of cases detected in histologic serial sections when relatively few tumors were present per lung. Detection of lesions and their resolution post therapy were complicated due to residual hemorrhagic, regressing tumor nodules and the development of lung edema both of which appeared as high density areas in the CT scans. We conclude that the microCT method used could identify some lung tumors as small as 100 microm in diameter; however, no concrete evaluation of therapy induced regression of the tumors could be

  5. High-Resolution Intravital Microscopy

    PubMed Central

    Andresen, Volker; Pollok, Karolin; Rinnenthal, Jan-Leo; Oehme, Laura; Günther, Robert; Spiecker, Heinrich; Radbruch, Helena; Gerhard, Jenny; Sporbert, Anje; Cseresnyes, Zoltan; Hauser, Anja E.; Niesner, Raluca

    2012-01-01

    Cellular communication constitutes a fundamental mechanism of life, for instance by permitting transfer of information through synapses in the nervous system and by leading to activation of cells during the course of immune responses. Monitoring cell-cell interactions within living adult organisms is crucial in order to draw conclusions on their behavior with respect to the fate of cells, tissues and organs. Until now, there is no technology available that enables dynamic imaging deep within the tissue of living adult organisms at sub-cellular resolution, i.e. detection at the level of few protein molecules. Here we present a novel approach called multi-beam striped-illumination which applies for the first time the principle and advantages of structured-illumination, spatial modulation of the excitation pattern, to laser-scanning-microscopy. We use this approach in two-photon-microscopy - the most adequate optical deep-tissue imaging-technique. As compared to standard two-photon-microscopy, it achieves significant contrast enhancement and up to 3-fold improved axial resolution (optical sectioning) while photobleaching, photodamage and acquisition speed are similar. Its imaging depth is comparable to multifocal two-photon-microscopy and only slightly less than in standard single-beam two-photon-microscopy. Precisely, our studies within mouse lymph nodes demonstrated 216% improved axial and 23% improved lateral resolutions at a depth of 80 µm below the surface. Thus, we are for the first time able to visualize the dynamic interactions between B cells and immune complex deposits on follicular dendritic cells within germinal centers (GCs) of live mice. These interactions play a decisive role in the process of clonal selection, leading to affinity maturation of the humoral immune response. This novel high-resolution intravital microscopy method has a huge potential for numerous applications in neurosciences, immunology, cancer research and developmental biology

  6. Cerebral blood flow and brain atrophy correlated by xenon contrast CT scanning

    SciTech Connect

    Kitagawa, Y.; Meyer, J.S.; Tanahashi, N.; Rogers, R.L.; Tachibana, H.; Kandula, P.; Dowell, R.E.; Mortel, K.F.

    1985-11-01

    Correlations between cerebral blood flow (CBF) measured during stable xenon contrast CT scanning and standard CT indices of brain atrophy were investigated in the patients with senile dementia of Alzheimer type, multi-infarct dementia and idiopathic Parkinson's disease. Compared to age-matched normal volunteers, significant correlations were found in patients with idiopathic Parkinson's disease between cortical and subcortical gray matter blood flow and brain atrophy estimated by the ventricular body ratio, and mild to moderate brain atrophy were correlated with stepwise CBF reductions. However, in patients with senile dementia of Alzheimer type and multi-infarct dementia, brain atrophy was not associated with stepwise CBF reductions. Overall correlations between brain atrophy and reduced CBF were weak. Mild degrees of brain atrophy are not always associated with reduced CBF.

  7. CT scan diagnosis of hepatic adenoma in a case of von Gierke disease

    PubMed Central

    Daga, Bipin Valchandji; Shah, Vaibhav R; More, Rahul B

    2012-01-01

    Hepatic adenoma is a well-defined, benign, solitary tumor of the liver. In individuals with glycogen storage disease I, adenoma tends to occur at a relatively younger age and can be multiple (adenomatosis). Imaging plays a pivotal role in diagnosing hepatic adenoma and in differentiating adenoma from other focal hepatic lesions. Especially in patients with von Gierke disease, in addition to the associated hepatomegaly caused by steatohepatitis and the diffusely reduced attenuation of the liver parenchyma seen on CT, there may be more than one hepatic adenoma in up to 40% of patients. Malignant degeneration of hepatic adenoma into hepatocellular carcinoma can occur and hence imaging is important for prompt diagnosis of adenoma and its complications. In this case report, we present a case of liver adenoma diagnosed by CT scan in a patient with von Gierke disease. PMID:22623817

  8. Initial experience with optical-CT scanning of RadBall Dosimeters.

    PubMed

    Oldham, M; Clift, C; Thomas, A; Farfan, E; Foley, T; Jannik, T; Adamovics, J; Holmes, C; Stanley, S

    2010-12-01

    The RadBall dosimeter is a novel device for providing 3-D information on the magnitude and distribution of contaminant sources of unknown radiation in a given hot cell, glovebox, or contaminated room. The device is presently under evaluation by the National Nuclear Lab (NNL, UK) and the Savannah River National Laboratory (SRNL, US), for application as a diagnostic device for such unknown contaminants in the nuclear industry. A critical component of the technique is imaging the dose distribution recorded in the RadBall using optical-CT scanning. Here we present our initial investigations using the Duke Mid-sized Optical-CT Scanner (DMOS) to image dose distributions deposited in RadBalls exposed to a variety of radiation treatments. PMID:21218190

  9. Initial experience with optical-CT scanning of RadBall Dosimeters

    PubMed Central

    Oldham, M; Clift, C; Thomas, A; Farfan, E; Foley, T; Jannik, T; Adamovics, J; Holmes, C; Stanley, S

    2010-01-01

    The RadBall dosimeter is a novel device for providing 3-D information on the magnitude and distribution of contaminant sources of unknown radiation in a given hot cell, glovebox, or contaminated room. The device is presently under evaluation by the National Nuclear Lab (NNL, UK) and the Savannah River National Laboratory (SRNL, US), for application as a diagnostic device for such unknown contaminants in the nuclear industry. A critical component of the technique is imaging the dose distribution recorded in the RadBall using optical-CT scanning. Here we present our initial investigations using the Duke Mid-sized Optical-CT Scanner (DMOS) to image dose distributions deposited in RadBalls exposed to a variety of radiation treatments. PMID:21218190

  10. Initial experience with optical-CT scanning of RadBall Dosimeters

    NASA Astrophysics Data System (ADS)

    Oldham, M.; Clift, C.; Thomas, A.; Farfan, E.; Foley, T.; Jannik, T.; Adamovics J.; Holmes, C.; Stanley, S.

    2010-11-01

    The RadBall dosimeter is a novel device for providing 3-D information on the magnitude and distribution of contaminant sources of unknown radiation in a given hot cell, glovebox, or contaminated room. The device is presently under evaluation by the National Nuclear Lab (NNL, UK) and the Savannah River National Laboratory (SRNL, US), for application as a diagnostic device for such unknown contaminants in the nuclear industry. A critical component of the technique is imaging the dose distribution recorded in the RadBall using optical-CT scanning. Here we present our initial investigations using the Duke Mid-sized Optical-CT Scanner (DMOS) to image dose distributions deposited in RadBalls exposed to a variety of radiation treatments.

  11. Construction and analysis of a head CT-scan database for craniofacial reconstruction.

    PubMed

    Tilotta, Françoise; Richard, Frédéric; Glaunès, Joan; Berar, Maxime; Gey, Servane; Verdeille, Stéphane; Rozenholc, Yves; Gaudy, J F

    2009-10-30

    This paper is devoted to the construction of a complete database which is intended to improve the implementation and the evaluation of automated facial reconstruction. This growing database is currently composed of 85 head CT-scans of healthy European subjects aged 20-65 years old. It also includes the triangulated surfaces of the face and the skull of each subject. These surfaces are extracted from CT-scans using an original combination of image-processing techniques which are presented in the paper. Besides, a set of 39 referenced anatomical skull landmarks were located manually on each scan. Using the geometrical information provided by triangulated surfaces, we compute facial soft-tissue depths at each known landmark positions. We report the average thickness values at each landmark and compare our measures to those of the traditional charts of [J. Rhine, C.E. Moore, Facial Tissue Thickness of American Caucasoïds, Maxwell Museum of Anthropology, Albuquerque, New Mexico, 1982] and of several recent in vivo studies [M.H. Manhein, G.A. Listi, R.E. Barsley, et al., In vivo facial tissue depth measurements for children and adults, Journal of Forensic Sciences 45 (1) (2000) 48-60; S. De Greef, P. Claes, D. Vandermeulen, et al., Large-scale in vivo Caucasian facial soft tissue thickness database for craniofacial reconstruction, Forensic Science International 159S (2006) S126-S146; R. Helmer, Schödelidentifizierung durch elektronische bildmischung, Kriminalistik Verlag GmbH, Heidelberg, 1984]. PMID:19665327

  12. Automatic segmentation of the facial nerve and chorda tympani in pediatric CT scans

    PubMed Central

    Reda, Fitsum A.; Noble, Jack H.; Rivas, Alejandro; McRackan, Theodore R.; Labadie, Robert F.; Dawant, Benoit M.

    2011-01-01

    Purpose: Cochlear implant surgery is used to implant an electrode array in the cochlea to treat hearing loss. The authors recently introduced a minimally invasive image-guided technique termed percutaneous cochlear implantation. This approach achieves access to the cochlea by drilling a single linear channel from the outer skull into the cochlea via the facial recess, a region bounded by the facial nerve and chorda tympani. To exploit existing methods for computing automatically safe drilling trajectories, the facial nerve and chorda tympani need to be segmented. The goal of this work is to automatically segment the facial nerve and chorda tympani in pediatric CT scans. Methods: The authors have proposed an automatic technique to achieve the segmentation task in adult patients that relies on statistical models of the structures. These models contain intensity and shape information along the central axes of both structures. In this work, the authors attempted to use the same method to segment the structures in pediatric scans. However, the authors learned that substantial differences exist between the anatomy of children and that of adults, which led to poor segmentation results when an adult model is used to segment a pediatric volume. Therefore, the authors built a new model for pediatric cases and used it to segment pediatric scans. Once this new model was built, the authors employed the same segmentation method used for adults with algorithm parameters that were optimized for pediatric anatomy. Results: A validation experiment was conducted on 10 CT scans in which manually segmented structures were compared to automatically segmented structures. The mean, standard deviation, median, and maximum segmentation errors were 0.23, 0.17, 0.18, and 1.27 mm, respectively. Conclusions: The results indicate that accurate segmentation of the facial nerve and chorda tympani in pediatric scans is achievable, thus suggesting that safe drilling trajectories can also be computed

  13. Optimal scan time for evaluation of parathyroid adenoma with [18F]-fluorocholine PET/CT

    PubMed Central

    Rep, Sebastijan; Lezaic, Luka; Kocjan, Tomaz; Pfeifer, Marija; Sever, Mojca Jensterle; Simoncic, Urban; Tomse, Petra; Hocevar, Marko

    2015-01-01

    Background Parathyroid adenomas, the most common cause of primary hyperparathyroidism, are benign tumours which autonomously produce and secrete parathyroid hormone. [18F]-fluorocholine (FCH), PET marker of cellular proliferation, was recently demonstrated to accumulate in lesions representing enlarged parathyroid tissue; however, the optimal time to perform FCH PET/CT after FCH administration is not known. The aim of this study was to determine the optimal scan time of FCH PET/CT in patients with primary hyperparathyroidism. Patients and methods. 43 patients with primary hyperparathyroidism were enrolled in this study. A triple-phase PET/CT imaging was performed five minutes, one and two hours after the administration of FCH. Regions of interest (ROI) were placed in lesions representing enlarged parathyroid tissue and thyroid tissue. Standardized uptake value (SUVmean), retention index and lesion contrast for parathyroid and thyroid tissue were calculated. Results Accumulation of FCH was higher in lesions representing enlarged parathyroid tissue in comparison to the thyroid tissue with significantly higher SUVmean in the second and in the third phase (p < 0.0001). Average retention index decreased significantly between the first and the second phase and increased significantly between the second and the third phase in lesions representing enlarged parathyroid tissue and decreased significantly over all three phases in thyroid tissue (p< 0.0001). The lesion contrast of lesions representing enlarged parathyroid tissue and thyroid tissue was significantly better in the second and the third phase compared to the first phase (p < 0.05). Conclusions According to the results the optimal scan time of FCH PET/CT for localization of lesions representing enlarged parathyroid tissue is one hour after administration of the FCH. PMID:26834518

  14. Semi-automated method to measure pneumonia severity in mice through computed tomography (CT) scan analysis

    NASA Astrophysics Data System (ADS)

    Johri, Ansh; Schimel, Daniel; Noguchi, Audrey; Hsu, Lewis L.

    2010-03-01

    Imaging is a crucial clinical tool for diagnosis and assessment of pneumonia, but quantitative methods are lacking. Micro-computed tomography (micro CT), designed for lab animals, provides opportunities for non-invasive radiographic endpoints for pneumonia studies. HYPOTHESIS: In vivo micro CT scans of mice with early bacterial pneumonia can be scored quantitatively by semiautomated imaging methods, with good reproducibility and correlation with bacterial dose inoculated, pneumonia survival outcome, and radiologists' scores. METHODS: Healthy mice had intratracheal inoculation of E. coli bacteria (n=24) or saline control (n=11). In vivo micro CT scans were performed 24 hours later with microCAT II (Siemens). Two independent radiologists scored the extent of airspace abnormality, on a scale of 0 (normal) to 24 (completely abnormal). Using the Amira 5.2 software (Mercury Computer Systems), a histogram distribution of voxel counts between the Hounsfield range of -510 to 0 was created and analyzed, and a segmentation procedure was devised. RESULTS: A t-test was performed to determine whether there was a significant difference in the mean voxel value of each mouse in the three experimental groups: Saline Survivors, Pneumonia Survivors, and Pneumonia Non-survivors. It was found that the voxel count method was able to statistically tell apart the Saline Survivors from the Pneumonia Survivors, the Saline Survivors from the Pneumonia Non-survivors, but not the Pneumonia Survivors vs. Pneumonia Non-survivors. The segmentation method, however, was successfully able to distinguish the two Pneumonia groups. CONCLUSION: We have pilot-tested an evaluation of early pneumonia in mice using micro CT and a semi-automated method for lung segmentation and scoring system. Statistical analysis indicates that the system is reliable and merits further evaluation.

  15. Development of 1-year-old computational phantom and calculation of organ doses during CT scans using Monte Carlo simulation

    NASA Astrophysics Data System (ADS)

    Pan, Yuxi; Qiu, Rui; Gao, Linfeng; Ge, Chaoyong; Zheng, Junzheng; Xie, Wenzhang; Li, Junli

    2014-09-01

    With the rapidly growing number of CT examinations, the consequential radiation risk has aroused more and more attention. The average dose in each organ during CT scans can only be obtained by using Monte Carlo simulation with computational phantoms. Since children tend to have higher radiation sensitivity than adults, the radiation dose of pediatric CT examinations requires special attention and needs to be assessed accurately. So far, studies on organ doses from CT exposures for pediatric patients are still limited. In this work, a 1-year-old computational phantom was constructed. The body contour was obtained from the CT images of a 1-year-old physical phantom and the internal organs were deformed from an existing Chinese reference adult phantom. To ensure the organ locations in the 1-year-old computational phantom were consistent with those of the physical phantom, the organ locations in 1-year-old computational phantom were manually adjusted one by one, and the organ masses were adjusted to the corresponding Chinese reference values. Moreover, a CT scanner model was developed using the Monte Carlo technique and the 1-year-old computational phantom was applied to estimate organ doses derived from simulated CT exposures. As a result, a database including doses to 36 organs and tissues from 47 single axial scans was built. It has been verified by calculation that doses of axial scans are close to those of helical scans; therefore, this database could be applied to helical scans as well. Organ doses were calculated using the database and compared with those obtained from the measurements made in the physical phantom for helical scans. The differences between simulation and measurement were less than 25% for all organs. The result shows that the 1-year-old phantom developed in this work can be used to calculate organ doses in CT exposures, and the dose database provides a method for the estimation of 1-year-old patient doses in a variety of CT examinations.

  16. Clinical Utility of 4D FDG-PET/CT Scans in Radiation Treatment Planning

    SciTech Connect

    Aristophanous, Michalis; Sher, David J.; Allen, Aaron M.; Larson, Elysia; Chen, Aileen B.

    2012-01-01

    Purpose: The potential role of four-dimensional (4D) positron emission tomography (PET)/computed tomography (CT) in radiation treatment planning, relative to standard three-dimensional (3D) PET/CT, was examined. Methods and Materials: Ten patients with non-small-cell lung cancer had sequential 3D and 4D [{sup 18}F]fluorodeoxyglucose PET/CT scans in the treatment position prior to radiation therapy. The gross tumor volume and involved lymph nodes were contoured on the PET scan by use of three different techniques: manual contouring by an experienced radiation oncologist using a predetermined protocol; a technique with a constant threshold of standardized uptake value (SUV) greater than 2.5; and an automatic segmentation technique. For each technique, the tumor volume was defined on the 3D scan (VOL3D) and on the 4D scan (VOL4D) by combining the volume defined on each of the five breathing phases individually. The range of tumor motion and the location of each lesion were also recorded, and their influence on the differences observed between VOL3D and VOL4D was investigated. Results: We identified and analyzed 22 distinct lesions, including 9 primary tumors and 13 mediastinal lymph nodes. Mean VOL4D was larger than mean VOL3D with all three techniques, and the difference was statistically significant (p < 0.01). The range of tumor motion and the location of the tumor affected the magnitude of the difference. For one case, all three tumor definition techniques identified volume of moderate uptake of approximately 1 mL in the hilar region on the 4D scan (SUV maximum, 3.3) but not on the 3D scan (SUV maximum, 2.3). Conclusions: In comparison to 3D PET, 4D PET may better define the full physiologic extent of moving tumors and improve radiation treatment planning for lung tumors. In addition, reduction of blurring from free-breathing images may reveal additional information regarding regional disease.

  17. Pulmonary complications of crack cocaine use: high-resolution computed tomography of the chest.

    PubMed

    Mançano, Alexandre; Marchiori, Edson; Zanetti, Gláucia; Escuissato, Dante Luiz; Duarte, Beatriz Cunha; Apolinário, Lourenço de Araujo

    2008-05-01

    Here, we report high-resolution computed tomography (HRCT) findings in a patient who developed sudden hemoptysis, dyspnea and chest pain after smoking crack cocaine. Chest X-rays showed consolidations, primarily in the upper lobes, and HRCT scans showed ground glass attenuation opacities, consolidations and air-space nodules. A follow-up CT, after drug use discontinuation and administration of corticosteroids, showed partial resolution of pulmonary lesions and the appearance of cavitations. Clinical, imaging and laboratory findings led to a diagnosis of 'crack lung'. PMID:18545829

  18. Effective one step-iterative fiducial marker-based compensation for involuntary motion in weight-bearing C-arm cone-beam CT scanning of knees

    NASA Astrophysics Data System (ADS)

    Choi, Jang-Hwan; Maier, Andreas; Berger, Martin; Fahrig, Rebecca

    2014-03-01

    We previously introduced three different fiducial marker-based correction methods (2D projection shifting, 2D projection warping, and 3D image warping) for patients' involuntary motion in the lower body during weight-bearing Carm CT scanning. The 3D warping method performed better than 2D methods since it could more accurately take into account the lower body motion in 3D. However, as the 3D warping method applies different rotational and translational movement to the reconstructed image for each projection frame, distance-related weightings were slightly twisted and thus result in overlaying background noise over the entire image. In order to suppress background noise and artifacts (e.g. metallic marker-caused streaks), the 3D warping method has been improved by incorporating bilateral filtering and a Landwebertype iteration in one step. A series of projection images of five healthy volunteers standing at various flexion angles were acquired using a C-arm cone-beam CT system with a flat panel. A horizontal scanning trajectory of the C-arm was calibrated to generate projection matrices. Using the projection matrices, the static reference marker coordinates in 3D were estimated and used for the improved 3D warping method. The improved 3D warping method effectively reduced background noise down below the noise level of 2D methods and also eliminated metal-generated streaks. Thus, improved visibility of soft tissue structures (e.g. fat and muscle) was achieved while maintaining sharp edges at bone-tissue interfaces. Any high resolution weight-bearing cone-beam CT system can apply this method for motion compensation.

  19. Development of automated quantification of visceral and subcutaneous adipose tissue volumes from abdominal CT scans

    NASA Astrophysics Data System (ADS)

    Mensink, Sanne D.; Spliethoff, Jarich W.; Belder, Ruben; Klaase, Joost M.; Bezooijen, Roland; Slump, Cornelis H.

    2011-03-01

    This contribution describes a novel algorithm for the automated quantification of visceral and subcutaneous adipose tissue volumes from abdominal CT scans of patients referred for colorectal resection. Visceral and subcutaneous adipose tissue volumes can accurately be measured with errors of 1.2 and 0.5%, respectively. Also the reproducibility of CT measurements is good; a disadvantage is the amount of radiation. In this study the diagnostic CT scans in the work - up of (colorectal) cancer were used. This implied no extra radiation. For the purpose of segmentation alone, a low dose protocol can be applied. Obesity is a well known risk factor for complications in and after surgery. Body Mass Index (BMI) is a widely accepted indicator of obesity, but it is not specific for risk assessment of colorectal surgery. We report on an automated method to quantify visceral and subcutaneous adipose tissue volumes as a basic step in a clinical research project concerning preoperative risk assessment. The outcomes are to be correlated with the surgery results. The hypothesis is that the balance between visceral and subcutaneous adipose tissue together with the presence of calcifications in the major bloodvessels, is a predictive indicator for post - operatieve complications such as anastomotic leak. We start with four different computer simulated humanoid abdominal volumes with tissue values in the appropriate Hounsfield range at different dose levels. With satisfactory numerical results for this test, we have applied the algorithm on over a 100 patient scans and have compared results with manual segmentations by an expert for a smaller pilot group. The results are within a 5% difference. Compared to other studies reported in the literature, reliable values are obtained for visceral and subcutaneous adipose tissue areas.

  20. Quantitative assessment of emphysema from whole lung CT scans: comparison with visual grading

    NASA Astrophysics Data System (ADS)

    Keller, Brad M.; Reeves, Anthony P.; Apanosovich, Tatiyana V.; Wang, Jianwei; Yankelevitz, David F.; Henschke, Claudia I.

    2009-02-01

    Emphysema is a disease of the lungs that destroys the alveolar air sacs and induces long-term respiratory dysfunction. CT scans allow for imaging of the anatomical basis of emphysema and for visual assessment by radiologists of the extent present in the lungs. Several measures have been introduced for the quantification of the extent of disease directly from CT data in order to add to the qualitative assessments made by radiologists. In this paper we compare emphysema index, mean lung density, histogram percentiles, and the fractal dimension to visual grade in order to evaluate the predictability of radiologist visual scoring of emphysema from low-dose CT scans through quantitative scores, in order to determine which measures can be useful as surrogates for visual assessment. All measures were computed over nine divisions of the lung field (whole lung, individual lungs, and upper/middle/lower thirds of each lung) for each of 148 low-dose, whole lung scans. In addition, a visual grade of each section was also given by an expert radiologist. One-way ANOVA and multinomial logistic regression were used to determine the ability of the measures to predict visual grade from quantitative score. We found that all measures were able to distinguish between normal and severe grades (p<0.01), and between mild/moderate and all other grades (p<0.05). However, no measure was able to distinguish between mild and moderate cases. Approximately 65% prediction accuracy was achieved from using quantitative score to predict visual grade, with 73% if mild and moderate cases are considered as a single class.

  1. Metastatic Renal Cell Carcinoma in the Thyroid Gland and Pancreas Showing Uptake on 68Ga DOTATATE PET/CT Scan.

    PubMed

    Kanthan, Gowri L; Schembri, Geoffrey Paul; Samra, Jaswinder; Roach, Paul; Hsiao, Edward

    2016-07-01

    Ga DOTATATE PET/CT is an imaging technique used in the diagnosis of neuroendocrine tumors. We report a case of 66-year-old woman with a history of surgically removed renal cell carcinoma who presented for a DOTATATE PET/CT scan to characterize a newly diagnosed pancreatic lesion. DOTATATE-avid lesions were identified in the thyroid gland and pancreas. Subsequent biopsy confirmed the diagnosis of metastatic renal cell carcinoma at both sites. It is important to be aware that tumors other than neuroendocrine tumors may also show uptake on DOTATATE PET/CT scan. A biopsy may be required if lesions are identified at atypical sites. PMID:27055137

  2. Muscle CT scan findings in McLeod syndrome and chorea-acanthocytosis.

    PubMed

    Ishikawa, S; Tachibana, N; Tabata, K I; Fujimori, N; Hayashi, R I; Takahashi, J; Ikeda, S I; Hanyu, N

    2000-07-01

    Computed tomography (CT) scans of lower leg muscles reveal a selective pattern of fat infiltration in the posterior compartment with spared gracilis, semitendinosus, and the lateral head of the gastrocnemius in both McLeod syndrome and chorea-acanthocytosis, which are disorders characterized by the presence of circulating acanthocytes. The selectivity of affected muscles indicates that late onset and slowly progressive muscular atrophy in both diseases could be a consequence of primary myopathy. Asymmetrical muscle involvement may be seen during the process of degeneration only in McLeod syndrome, however, and may be helpful in distinguishing this disease from chorea-acanthocytosis. PMID:10883007

  3. An Adaptive-Tabu GA for Registration of CT and Surface Laser Scan.

    PubMed

    Lee, Jiann-Der; Huang, Jau-Hua; Huang, Chung-Hsien; Liu, Li-Chang

    2005-01-01

    An adaptive-tabu GA (Genetic Algorithm) method is proposed to improve some traditional GA methods in the registration of computer tomography (CT) and surface laser scan. In this method, the adaptive memory structure and search strategy of Tabu Search (TS) with the modified chromosome crossover and adaptive mutation are proposed to increase the convergence speed and accuracy of the fitness function. This registration method can be used on non-fiducial stereo-tactic brain surgeries to assist surgeons to diagnose and treat brain diseases. PMID:17280970

  4. Reproducibilty test of ferrous xylenol orange gel dose response with optical cone beam CT scanning

    NASA Astrophysics Data System (ADS)

    Jordan, K.; Battista, J.

    2004-01-01

    Our previous studies of ferrous xylenol orange gelatin gel have revealed a spatial dependence to the dose response of samples contained in 10 cm diameter cylinders. Dose response is defined as change in optical attenuation coefficient divided by the dose (units cm-1 Gy-1). This set of experiments was conducted to determine the reproducibility of our preparation, irradiation and full 3D optical cone beam CT scanning. The data provided an internal check of a larger storage time-dose response dependence study.

  5. Preliminary evaluation of optical CT scanning versus MRI for nPAG gel dosimetry: The Ghent experience

    NASA Astrophysics Data System (ADS)

    Vandecasteele, Jan; DeDeene, Yves

    2009-05-01

    The aim of this study was to evaluate fast laser-scanning optical CT versus MRI for an nPAG gel dosimeter in terms of accuracy and precision. Three small cylindrical volumetric gel phantoms were fabricated and irradiated with photon beams. The gel dosimeters were scanned with an MR scanner and an in house developed laser scanning optical CT scanner. A comparison between MRI and optical CT scanning was performed based on the reconstructed images. Preliminary results show a fair correspondence in the MRI acquired and optical CT acquired dose maps. Still, ringing artifacts contaminate the reconstructed optical CT images. These may be related to sub-pixel misalignments between the blank projection and the acquired transmission projection of the gel phantom. Another artifact may be caused by refraction near the edges of the field. Further optimisation of our optical CT scanner is required to obtain the same accuracy as with MRI. To make a comparison between the two imaging modalities in terms of precision, the intrinsic dose precision on readout (IPD) was calculated which is independent of spatial resolution and acquisition time. It is shown that optical CT has a better intrinsic dose precision.

  6. The pros and cons of intraoperative CT scan in evaluation of deep brain stimulation lead implantation: A retrospective study

    PubMed Central

    Servello, Domenico; Zekaj, Edvin; Saleh, Christian; Pacchetti, Claudio; Porta, Mauro

    2016-01-01

    Background: Deep brain stimulation (DBS) is an established therapy for movement disorders, such as Parkinson's disease (PD), dystonia, and tremor. The efficacy of DBS depends on the correct lead positioning. The commonly adopted postoperative radiological evaluation is performed with computed tomography (CT) scan and/or magnetic resonance imaging (MRI). Methods: We conducted a retrospective study on 202 patients who underwent DBS from January 2009 to October 2013. DBS indications were PD, progressive supranuclear palsy, tremor, dystonia, Tourette syndrome, obsessive compulsive disorder, depression, and Huntington's disease. Preoperatively, all patients underwent brain MRI and brain CT scan with the stereotactic frame positioned. The lead location was confirmed intraoperatively with CT. The CT images were subsequently transferred to the Stealth Station Medtronic and merged with the preoperative planning. On the first or second day after, implantation we performed a brain MRI to confirm the correct position of the lead. Results: In 14 patients, leads were in suboptimal position after intraoperative CT scan positioning. The cases with alteration in the Z-axis were corrected immediately under fluoroscopic guidance. In all the 14 patients, an immediate repositioning was done. Conclusions: Based on our data, intraoperative CT scan is fast, safe, and a useful tool in the evaluation of the position of the implanted lead. It also reduces the patient's discomfort derived from the transfer of the patient from the operating room to the radiological department. However, intraoperative CT should not be considered as a substitute for postoperative MRI. PMID:27583182

  7. Implemented myeloma management with whole-body low-dose CT scan: a real life experience.

    PubMed

    Mangiacavalli, Silvia; Pezzatti, Sara; Rossini, Fausto; Doni, Elisa; Cocito, Federica; Bolis, Silvia; Corso, Alessandro

    2016-07-01

    A total of 318 consecutive myeloma patients underwent whole-body low-dose CT scan (WBLDCT) at baseline and during follow-up as a radiological assessment of lytic lesions in place of skeletal X-ray survey. After WBLDCT baseline assessment, 60% had bone involvement. The presence of lytic lesions represented the only met CRAB (hyperCalcaemia, Renal insufficiency, Anaemia, Bone lesions) criteria in 29% of patients. Patients presenting with extramedullary masses were 10%. Radiological progression was documented in 9% of the population with available follow-up. Additional pathological incidental findings were detected in 28 patients (14.5%), most located in the chest region (68%). In conclusion, our real-life data shows that WBLDCT scan represents a reliable imaging tool for decision-making process for multiple myeloma management in different disease phases, providing significant additional information on the presence of soft tissues plasmacytomas detection as well as the presence of pathological incidental findings. PMID:26788613

  8. Progressive massive fibrosis developing after brief coal dust exposure: evaluation with CT scann