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Sample records for hydrogen adsorbate structures

  1. Hydrogen molecule on lithium adsorbed graphene: A DFT study

    NASA Astrophysics Data System (ADS)

    Kaur, Gagandeep; Gupta, Shuchi; Gaganpreet, Dharamvir, Keya

    2016-05-01

    Electronic structure calculations for the adsorption of molecular hydrogen on lithium (Li) decorated and pristine graphene have been studied systematically using SIESTA code [1] within the framework of the first-principle DFT under the Perdew-Burke-Ernzerhof (PBE) form of the generalized gradient approximation (GGA)[2], including spin polarization. The energy of adsorption of hydrogen molecule on graphene is always enhanced by the presence of co-adsorbed lithium. The most efficient adsorption configuration is when H2 is lying parallel to lithium adsorbed graphene which is in contrast to its adsorption on pristine graphene (PG) where it prefers perpendicular orientation.

  2. Hydrogen adsorption of ruthenium: Isosteres of solubility of adsorbed hydrogen

    SciTech Connect

    Zaginaichenko, S.Y.; Matysina, Z.A.; Schur, D.V.; Pishuk, V.K.

    1998-12-31

    The theoretical investigation of solubility isosteres of adsorbed hydrogen has been performed for free face (0001) of crystals with hexagonal close-packed lattice A3 of Mg type. The face free energy has been calculated and its dependence on temperature, pressure, hydrogen concentration and character of hydrogen atoms distribution over surface interstitial sites of different type has been defined. The equations of thermodynamic equilibrium and solubility of adsorbed hydrogen have been defined. The plots of isosteres in the region of phase transition from isotropic to anisotropic state have been constructed and it has been established that in anisotropic state the order in distribution of hydrogen atoms over interstitial sites of different type must become apparent. Comparison of the theoretical isosteres with experimental for ruthenium has been carried out, the isotropic-anisotropic state transition can stipulate a stepwise and break-like change in isosteres.

  3. Structure and properties of water film adsorbed on mica surfaces

    NASA Astrophysics Data System (ADS)

    Zhao, Gutian; Tan, Qiyan; Xiang, Li; Cai, Di; Zeng, Hongbo; Yi, Hong; Ni, Zhonghua; Chen, Yunfei

    2015-09-01

    The structure profiles and physical properties of the adsorbed water film on a mica surface under conditions with different degrees of relative humidity are investigated by a surface force apparatus. The first layer of the adsorbed water film shows ice-like properties, including a lattice constant similar with ice crystal, a high bearing capacity that can support normal pressure as high as 4 MPa, a creep behavior under the action of even a small normal load, and a character of hydrogen bond. Adjacent to the first layer of the adsorbed water film, the water molecules in the outer layer are liquid-like that can flow freely under the action of external loads. Experimental results demonstrate that the adsorbed water layer makes the mica surface change from hydrophilic to weak hydrophobic. The weak hydrophobic surface may induce the latter adsorbed water molecules to form water islands on a mica sheet.

  4. High-performances carbonaceous adsorbents for hydrogen storage

    NASA Astrophysics Data System (ADS)

    Zhao, Weigang; Fierro, Vanessa; Aylon, E.; Izquierdo, M. T.; Celzard, Alain

    2013-03-01

    Activated carbons (ACs) with controlled microporosity have been prepared and their H2 storage performances have been tested in a gravimetric device. Such adsorbents are natural Chinese anthracites chemically activated with alkaline hydroxides, NaOH or KOH. Outstanding total storage capacities of hydrogen, as high as 6.6wt.% equivalent to excess capacity of 6.2 wt.%, have been obtained at 4MPa for some of these adsorbents. These values of hydrogen adsorption are among the best, if not the highest, ever published so far in the open literature. They are well above those of some commercial materials, e.g. Maxsorb-3, considered as a reference of high-performance adsorbent for hydrogen adsorption. Such exceptional storage capacities may be ascribed to a higher volume of micropores (< 2nm).

  5. Hydrogen storage on palladium adsorbed graphene: A density functional theory study

    NASA Astrophysics Data System (ADS)

    Pantha, Nurapati; Khaniya, Asim; Adhikari, Narayan Prasad

    2015-07-01

    We have performed density functional theory (DFT)-based first-principles calculations to study the stability, geometrical structures, and electronic properties of a single palladium (Pd) atom adsorbed graphene with reference to pristine graphene. The study also covers the adsorption properties of molecular hydrogen/s on the most stable Pd-graphene geometry by taking into account London dispersion forces in addition to the standard DFT calculations in the Quantum ESPRESSO package. From the analysis of estimated values of binding energy of Pd on different occupation sites (i.e., bridge, hollow, and top) of graphene supercells, the bridge site is found to be the most favorable one with the magnitudes of 1.114, 1.426, and 1.433 eV in 2×2, 3×3, and 4×4 supercells, respectively. The study of the electronic properties of Pd adsorbed graphene shows a bandgap of 45 meV, which can account for the breaking of the symmetry of the graphene structure. Regarding the gaseous (hydrogen) adsorption on Pd-adatom graphene, we checked the increasing number of molecular hydrogens (H2) from one to seven on the 3×3 supercell, and found that the adsorption energy per H2 decreases on increasing hydrogen concentration and lies within the range of 0.998-0.151 eV.

  6. Application of Henry's Law for Binding Energies of Adsorbed Hydrogen

    NASA Astrophysics Data System (ADS)

    Gillespie, Andrew; Dohnke, Elmar; Stalla, David; Sweany, Mark; Pfeifer, Peter

    2015-03-01

    The method of isosteres is the simplest method used to calculate the differential enthalpy of adsorption. However, it is incredibly sensitive to the choice of model and respective fitting parameters. For a set of isotherms measured on a specific sample, most models converge upon a similar value at high coverage, but are inconsistent in the low pressure regime. In this talk, we investigate the application of various models for localized and mobile adsorption at low pressures in order to obtain binding energy of hydrogen to the adsorbent surface. Henry's Law analysis of the Langmuir Model of adsorption yield binding energies in excellent agreement with those obtained from the Clausius Clapeyron relation. Work supported by DOE-EERE, Award No. DE-FG36-08GO18142.

  7. Hydrogen storage on high-surface-area carbon monoliths for Adsorb hydrogen Gas Vehicle

    NASA Astrophysics Data System (ADS)

    Soo, Yuchoong; Pfeifer, Peter

    2014-03-01

    Carbon briquetting can increase hydrogen volumetric storage capacity by reducing the useless void volume resulting in a better packing density. It is a robust and efficient space-filling form for an adsorbed hydrogen gas vehicle storage tank. To optimize hydrogen storage capacity, we studied three fabrication process parameters: carbon-to-binder ratio, compaction temperature, and pyrolysis atmosphere. We found that carbon-to-binder ratio and pyrolysis atmosphere have influences on gravimetric excess adsorption. Compaction temperature has large influences on gravimetric and volumetric storage capacity. We have been able to optimize these parameters for high hydrogen storage. All monolith uptakes (up to 260 bar) were measured by a custom-built, volumetric, reservoir-type instrument.

  8. Removal of hydrogen sulfide at ambient conditions on cadmium/GO-based composite adsorbents.

    PubMed

    Florent, Marc; Wallace, Rajiv; Bandosz, Teresa J

    2015-06-15

    Cadmium-based materials with various hydroxide to carbonate ratios and their composites with graphite oxide were synthesized by a fast and simple precipitation procedure and then used as H2S adsorbents at ambient conditions in the dark or upon a visible light exposure. The structural properties and chemical features of the adsorbents were analyzed before and after hydrogen sulfide adsorption. The results showed that the high ratio of hydroxide to carbonate led to an improved H2S adsorption capacity. In moist conditions cadmium hydroxide was the best adsorbent. Moreover, it showed photoactive properties. While the incorporation of a graphene-based phase slightly decreased the extent of the improvement in the H2S adsorption capacity in moist conditions caused by photoactivity, its presence in the composites enhanced the performance in dry conditions. This was linked to photoactivity of CdS that can split H2S resulting in the formation of water in the system. The graphene-based phase enhanced the electron transfer and delayed the recombination of photoinduced charges. Carbonate-based materials showed a very good adsorption capacity in dark conditions in the presence of moisture. Upon the light exposure, CdS likely photocatalyzes the reduction of carbonate ions to formates/formaldehydes. Their deposition on the surface limits the number of sites available to H2S adsorption. PMID:25792480

  9. Interaction between adsorbed hydrogen and potassium on a carbon nanocone containing material as studied by photoemission

    SciTech Connect

    Yu, Xiaofeng; Raaen, Steinar

    2015-09-14

    Hydrogen adsorption on a potassium doped carbon nanocone containing material was studied by photoelectron spectroscopy and work function measurement. The valence band spectra indicate that there is charge transfer from potassium to carbon. Upon deposition on carbon potassium is in its ionic state for lower doping and shows both ionic and metallic behavior at higher doping. Adsorption of hydrogen facilitates diffusion of potassium on the carbon material as seen by changes in the K{sub 2p} core level spectrum. Variations in the measured sample work function indicate that hydrogen initially adsorb on the K dopants and subsequently adsorb on the carbon cone containing material.

  10. Towards 9 weight percent, reversible, room temperature hydrogen adsorbents: Hydrogen saturated organometallic bucky balls

    NASA Astrophysics Data System (ADS)

    Zhao, Yufeng

    2005-03-01

    A new concept for high-capacity hydrogen absorbents is introduced by first-principles calculations. Transition metal (TM) atoms bound to fullerenes are proposed as a medium for high density, room temperature, ambient pressure storage of hydrogen. TMs bind to C60 or C48B12 by charge transfer interactions to produce stable organometallic bucky balls (OBBs) and bind to multiple dihydrogen molecules through the so-called Kubas interaction [1]. A particular scandium OBB can bind as many as eleven hydrogen atoms per TM, ten of which are bound in the form of dihydrogen molecular ligands that can be adsorbed and desorbed reversibly. In this case, the calculated binding energy is around 0.3 eV/H2, which is ideal for use on-board vehicles. The theoretical maximum retrievable H2 storage density is about 9 weight percent. This work was supported by the U.S. DOE EERE, BES/MS, and BES/CS under contract No. DEAC36-99GO10337. [1] G.J. Kubas, J. Organometallic Chem. 635, 37 (2001).

  11. Heat capacity of quantum adsorbates: Hydrogen and helium on evaporated gold films

    SciTech Connect

    Birmingham, J.T. |

    1996-06-01

    The author has constructed an apparatus to make specific heat measurements of quantum gases adsorbed on metallic films at temperatures between 0.3 and 4 K. He has used this apparatus to study quench-condensed hydrogen films between 4 and 923 layers thick with J = 1 concentrations between 0.28 and 0.75 deposited on an evaporated gold surface. He has observed that the orientational ordering of the J = 1 molecules depends on the substrate temperature during deposition of the hydrogen film. He has inferred that the density of the films condensed at the lowest temperatures is 25% higher than in bulk H{sub 2} crystals and have observed that the structure of those films is affected by annealing at 3.4 K. The author has measured the J = 1 to J = 0 conversion rate to be comparable to that of the bulk for thick films; however, he found evidence that the gold surface catalyzes conversion in the first two to four layers. He has also used this apparatus to study films of {sup 4}He less than one layer thick adsorbed on an evaporated gold surface. He shows that the phase diagram of the system is similar to that for {sup 4}He/graphite although not as rich in structure, and the phase boundaries occur at different coverages and temperatures. At coverages below about half a layer and at sufficiently high temperatures, the {sup 4}He behaves like a two-dimensional noninteracting Bose gas. At lower temperatures and higher coverages, liquidlike and solidlike behavior is observed. The Appendix shows measurements of the far-infrared absorptivity of the high-{Tc} superconductor La{sub 1.87}Sr{sub 0.13}CuO{sub 4}.

  12. Electronic structure of benzene adsorbed on Ni and Cu surfaces

    SciTech Connect

    Weinelt, M.; Nilsson, A.; Wassdahl, N.

    1997-04-01

    Benzene has for a long time served as a prototype adsorption system of large molecules. It adsorbs with the molecular plane parallel to the surface. The bonding of benzene to a transition metal is typically viewed to involve the {pi} system. Benzene adsorbs weakly on Cu and strongly on Ni. It is interesting to study how the adsorption strength is reflected in the electronic structure of the adsorbate-substrate complex. The authors have used X-ray Emission (XE) and X-ray Absorption (XA) spectroscopies to selectively study the electronic states localized on the adsorbed benzene molecule. Using XES the occupied states can be studies and with XAS the unoccupied states. The authors have used beamline 8.0 and the Swedish endstation equipped with a grazing incidence x-ray spectrometer and a partial yield absorption detector. The resolution in the XES and XAS were 0.5 eV and 0.05 eV, respectively.

  13. Electrochemical desorption of hydrogen atoms adsorbed on liquid gallium

    SciTech Connect

    Krivenko, A.G.; Vekin, A.B.; Benderskii, V.A.

    1987-12-01

    Laser-pulse electron photoemission was used to measure absolute values of the rate constants, W/sub 3/, of electrochemical desorption (ECD) of hydrogen atoms from liquid gallium. The W/sub 3/ were shown to be a linear function of hydrogen concentration, in accord with the fact that both hydrogen ions and water molecules are involved in desorption. The components of W/sub 3/ arising from the two reaction channels are exponential functions of electrode potential, and in their order of magnitude (approx. 10/sup 8/ liter/mole x sec and approx. 10/sup 6/ sec/sup -1/) are close to the corresponding constants for mercury and bismuth. In the desorption involving hydrogen ions, the H/D isotope effect decreases from 5 to 3 as the overpotential is raised from 0.75 to 1.15 V. It was suggested that isotope effects which are higher than those found for Hg and Bi electrodes arise from longer proton tunneling distance.

  14. Structural characterization of adsorbed helical and beta-sheet peptides

    NASA Astrophysics Data System (ADS)

    Samuel, Newton Thangadurai

    Adsorbed peptides on surfaces have potential applications in the fields of biomaterials, tissue engineering, peptide microarrays and nanobiotechnology. The surface region, the "biomolecular interface" between a material and the biological environment, plays a crucial role in these applications. As a result, characterization of adsorbed peptide structure, especially with respect to identity, concentration, spatial distribution, conformation and orientation, is important. The present research employs NEXAFS (near-edge X-ray absorption fine structure spectroscopy) and SFG (sum frequency generation spectroscopy) to provide information about the adsorbed peptide structure. Soft X-ray NEXAFS is a synchrotron-based technique which typically utilizes polarized X-rays to interrogate surfaces under ultra-high vacuum conditions. SFG is a non-linear optical technique which utilizes a combination of a fixed visible and a tunable infrared laser beams to generate a surface-vibrational spectrum of surface species. SFG has the added advantage of being able to directly analyze the surface-structure at the solid-liquid interface. The main goals of the present research were twofold: characterize the structure of adsorbed peptides (1) ex situ using soft X-ray NEXAFS, and (2) in situ using non-linear laser spectroscopy (SFG). Achieving the former goal involved first developing a comprehensive characterization of the carbon, nitrogen and oxygen k-edge NEXAFS spectra for amino acids, and then using a series of helical and beta-sheet peptides to demonstrate the sensitivity of polarization-dependent NEXAFS to secondary structure of adsorbed peptides. Characterizing the structure of adsorbed peptides in situ using SFG involved developing a model system to probe the solid-liquid interface in situ; demonstrating the ability to probe the molecular interactions and adsorbed secondary structure; following the time-dependent ordering of the adsorbed peptides; and establishing the ability to obtain

  15. Rotational Spectromicroscopy: Imaging the Orbital Interaction between Molecular Hydrogen and an Adsorbed Molecule

    NASA Astrophysics Data System (ADS)

    Li, Shaowei; Yuan, Dingwang; Yu, Arthur; Czap, Gregory; Wu, Ruqian; Ho, W.

    2015-05-01

    A hydrogen molecule can diffuse freely on the surface and be trapped above an adsorbed molecule within the junction of a scanning tunneling microscope. The trapped dihydrogen exhibits the properties of a free rotor. Here we show that the intermolecular interaction between dihydrogen and Mg-porphyrin (MgP) can be visualized by imaging j =0 to 2 rotational excitation of dihydrogen. The interaction leads to a weakened H-H bond and modest electron donation from the dihydrogen to the lowest unoccupied molecular orbital of MgP, a process similarly observed for the interaction between dihydrogen and an adsorbed Au atom.

  16. Rotational Spectromicroscopy: Imaging the Orbital Interaction between Molecular Hydrogen and an Adsorbed Molecule.

    PubMed

    Li, Shaowei; Yuan, Dingwang; Yu, Arthur; Czap, Gregory; Wu, Ruqian; Ho, W

    2015-05-22

    A hydrogen molecule can diffuse freely on the surface and be trapped above an adsorbed molecule within the junction of a scanning tunneling microscope. The trapped dihydrogen exhibits the properties of a free rotor. Here we show that the intermolecular interaction between dihydrogen and Mg-porphyrin (MgP) can be visualized by imaging j=0 to 2 rotational excitation of dihydrogen. The interaction leads to a weakened H-H bond and modest electron donation from the dihydrogen to the lowest unoccupied molecular orbital of MgP, a process similarly observed for the interaction between dihydrogen and an adsorbed Au atom. PMID:26047242

  17. Probing the effects of 2D confinement on hydrogen dynamics in water and ice adsorbed in graphene oxide sponges.

    PubMed

    Romanelli, Giovanni; Senesi, Roberto; Zhang, Xuan; Loh, Kian Ping; Andreani, Carla

    2015-12-21

    We studied the single particle dynamics of water and ice adsorbed in graphene oxide (GO) sponges at T = 293 K and T = 20 K. We used Deep Inelastic Neutron Scattering (DINS) at the ISIS neutron and muon spallation source to derive the hydrogen mean kinetic energy, 〈EK〉, and momentum distribution, n(p). The goal of this work was to study the hydrogen dynamics under 2D confinement and the potential energy surface, fingerprinting the hydrogen interaction with the layered structure of the GO sponge. The observed scattering is interpreted within the framework of the impulse approximation. Samples of both water and ice adsorbed in GO show n(p) functions with almost harmonic and anisotropic line shapes and 〈EK〉 values in excess of the values found at the corresponding temperatures in the bulk. The hydrogen dynamics are discussed in the context of the interaction between the interfacial water and ice and the confining hydrophilic surface of the GO sponge. PMID:26556604

  18. Spectral evidence for hydrogen-induced reversible segregation of CO adsorbed on titania-supported rhodium.

    PubMed

    Panayotov, D; Mihaylov, M; Nihtianova, D; Spassov, T; Hadjiivanov, K

    2014-07-14

    The reduction of a 1.3% Rh/TiO2 sample with carbon monoxide leads to the formation of uniform Rh nanoparticles with a mean diameter of dp ≈ 2.2 nm. Adsorption of CO on the reduced Rh/TiO2 produces linear and bridged carbonyls bound to metallic Rh(0) sites and only a few geminal dicarbonyls of Rh(I). The ν(CO) of linear Rh(0)-CO complexes is strongly coverage dependent: it is observed at 2078 cm(-1) at full coverage and at ca. 2025 cm(-1) at approximated zero coverage. At low coverage, this shift is mainly caused by a dipole-dipole interaction between the adsorbed CO molecules while at high coverage, the chemical shift also becomes important. Hydrogen hardly affects the CO adlayer at high CO coverages. However, on a partially CO-covered surface (θCO ≈ 0.5), the adsorption of H2 at increasing pressure leads to a gradual shift in the band of linear Rh(0)-CO from 2041 to 2062 cm(-1). Subsequent evacuation almost restores the original spectrum, demonstrating the reversibility of the hydrogen effect. Through the use of (12)CO + (13)CO isotopic mixtures, it is established that the addition of hydrogen to the CO-Rh/TiO2 system leads to an increase in the dynamic interaction between the adsorbed CO molecules. This evidences an increase in the density of the adsorbed CO molecules and indicates segregation of the CO and hydrogen adlayers. When CO is adsorbed on a hydrogen-precovered surface, the carbonyl band maximum is practically coverage independent and is observed at 2175-2173 cm(-1). These results are explained by a model according to which CO successively occupies different rhodium nanoparticles. PMID:24866330

  19. Decontamination of adsorbed chemical warfare agents on activated carbon using hydrogen peroxide solutions.

    PubMed

    Osovsky, Ruth; Kaplan, Doron; Nir, Ido; Rotter, Hadar; Elisha, Shmuel; Columbus, Ishay

    2014-09-16

    Mild treatment with hydrogen peroxide solutions (3-30%) efficiently decomposes adsorbed chemical warfare agents (CWAs) on microporous activated carbons used in protective garments and air filters. Better than 95% decomposition of adsorbed sulfur mustard (HD), sarin, and VX was achieved at ambient temperatures within 1-24 h, depending on the H2O2 concentration. HD was oxidized to the nontoxic HD-sulfoxide. The nerve agents were perhydrolyzed to the respective nontoxic methylphosphonic acids. The relative rapidity of the oxidation and perhydrolysis under these conditions is attributed to the microenvironment of the micropores. Apparently, the reactions are favored due to basic sites on the carbon surface. Our findings suggest a potential environmentally friendly route for decontamination of adsorbed CWAs, using H2O2 without the need of cosolvents or activators. PMID:25133545

  20. Interactions between Adsorbed Hydrogenated Soy Phosphatidylcholine (HSPC) Vesicles at Physiologically High Pressures and Salt Concentrations

    PubMed Central

    Goldberg, Ronit; Schroeder, Avi; Barenholz, Yechezkel; Klein, Jacob

    2011-01-01

    Using a surface force balance, we measured normal and shear interactions as a function of surface separation between layers of hydrogenated soy phosphatidylcholine (HSPC) small unilamellar vesicles (SUVs) adsorbed from dispersion at physiologically high salt concentrations (0.15 M NaNO3). Cryo-scanning electron microscopy shows that each surface is coated by a close-packed HSPC-SUV layer with an overlayer of liposomes on top. A clear attractive interaction between the liposome layers is seen upon approach and separation, followed by a steric repulsion upon further compression. The shear forces reveal low friction coefficients (μ = 0.008–0.0006) up to contact pressures of at least 6 MPa, comparable to those observed in the major joints. The spread in μ-values may be qualitatively accounted for by different local liposome structure at different contact points, suggesting that the intrinsic friction of the HSPC-SUV layers at this salt concentration is closer to the lower limit (μ = ∼0.0006). This low friction is attributed to the hydration lubrication mechanism arising from rubbing of the hydrated phosphocholine-headgroup layers exposed at the outer surface of each liposome, and provides support for the conjecture that phospholipids may play a significant role in biological lubrication. PMID:21575574

  1. Adsorbate structures and catalytic reactions studied in the torrpressure range by scanning tunneling microscopy

    SciTech Connect

    Hwang, Kevin Shao-Lin

    2003-05-23

    High-pressure, high-temperature scanning tunneling microscopy (HPHTSTM) was used to study adsorbate structures and reactions on single crystal model catalytic systems. Studies of the automobile catalytic converter reaction [CO + NO {yields} 1/2 N{sub 2} + CO{sub 2}] on Rh(111) and ethylene hydrogenation [C{sub 2}H{sub 4} + H{sub 2} {yields} C{sub 2}H{sub 6}] on Rh(111) and Pt(111) elucidated information on adsorbate structures in equilibrium with high-pressure gas and the relationship of atomic and molecular mobility to chemistry. STM studies of NO on Rh(111) showed that adsorbed NO forms two high-pressure structures, with the phase transformation from the (2 x 2) structure to the (3 x 3) structure occurring at 0.03 Torr. The (3 x 3) structure only exists when the surface is in equilibrium with the gas phase. The heat of adsorption of this new structure was determined by measuring the pressures and temperatures at which both (2 x 2) and (3 x 3) structures coexisted. The energy barrier between the two structures was calculated by observing the time necessary for the phase transformation to take place. High-pressure STM studies of the coadsorption of CO and NO on Rh(111) showed that CO and NO form a mixed (2 x 2) structure at low NO partial pressures. By comparing surface and gas compositions, the adsorption energy difference between topsite CO and NO was calculated. Occasionally there is exchange between top-site CO and NO, for which we have described a mechanism for. At high NO partial pressures, NO segregates into islands, where the phase transformation to the (3 x 3) structure occurs. The reaction of CO and NO on Rh(111) was monitored by mass spectrometry (MS) and HPHTSTM. From MS studies the apparent activation energy of the catalytic converter reaction was calculated and compared to theory. STM showed that under high-temperature reaction conditions, surface metal atoms become mobile. Ethylene hydrogenation and its poisoning by CO was also studied by STM on Rh

  2. Organic silicon compounds anf hydrogen sulfide removal from biogas by mineral and adsorbent

    NASA Astrophysics Data System (ADS)

    Choi, J.

    2015-12-01

    Biogas utilized for energy production needs to be free from organic silicon compounds and hydrogen sulfide , as their burning has damaging effects on utilities and humans; organic silicon compounds and hydrogen sulfide can be found in biogas produced from biomass wastes, due to their massive industrial use in synthetic product,such as cosmetics, detergents and paints.Siloxanes and hydrogen sulfide removal from biogas can be carried out by various methods (Ajhar et al., 2010); aim of the present work is to find a single practical andeconomic way to drastically and simultaneously reduce both hydrogen sulfide and the siloxanes concentration to less than 1 ppm. Some commercial activated carbons previously selected (Monteleoneet al., 2011) as being effective in hydrogen sulfide up taking have been tested in an adsorption measurement apparatus, by flowing both hydrogen sulphide and volatile siloxane (Decamethycyclopentasiloxane or D5) in a nitrogen stream,typically 25-300 ppm D5 over N2, through an clay minerals, Fe oxides and Silica; the adsorption process was analyzed by varying some experimental parameters (concentration, grain size, bed height). The best silica shows an adsorption capacity of 0.2 g D5 per gram of silica. The next thermo gravimetric analysis (TGA) confirms the capacity data obtained experimentally by the breakthrough curve tests.The capacity results depend on D5 and hydrogen sulphide concentrations. A regenerative silica process is then carried out byheating the silica bed up to 200 ° C and flushing out the adsorbed D5 and hydrogen sulphide samples in a nitrogen stream in athree step heating procedure up to 200 ° C. The adsorption capacity is observed to degrade after cyclingthe samples through several adsorption-desorption cycles.

  3. Chemical and structural characterization of copper adsorbed on mosses (Bryophyta).

    PubMed

    González, Aridane G; Jimenez-Villacorta, Felix; Beike, Anna K; Reski, Ralf; Adamo, Paola; Pokrovsky, Oleg S

    2016-05-01

    The adsorption of copper on passive biomonitors (devitalized mosses Hypnum sp., Sphagnum denticulatum, Pseudoscleropodium purum and Brachythecium rutabulum) was studied under different experimental conditions such as a function of pH and Cu concentration in solution. Cu assimilation by living Physcomitrella patents was also investigated. Molecular structure of surface adsorbed and incorporated Cu was studied by X-ray Absorption Spectroscopy (XAS). Devitalized mosses exhibited the universal adsorption pattern of Cu as a function of pH, with a total binding sites number 0.05-0.06 mmolg(dry)(-1) and a maximal adsorption capacity of 0.93-1.25 mmolg(dry)(-1) for these devitalized species. The Extended X-ray Absorption Fine Structure (EXAFS) fit of the first neighbor demonstrated that for all studied mosses there are ∼4.5 O/N atoms around Cu at ∼1.95 Å likely in a pseudo-square geometry. The X-ray Absorption Near Edge Structure (XANES) analysis demonstrated that Cu(II)-cellulose (representing carboxylate groups) and Cu(II)-phosphate are the main moss surface binding moieties, and the percentage of these sites varies as a function of solution pH. P. patens exposed during one month to Cu(2+) yielded ∼20% of Cu(I) in the form of Cu-S(CN) complexes, suggesting metabolically-controlled reduction of adsorbed and assimilated Cu(2+). PMID:26852210

  4. Structure of Inert Gases Adsorbed in MCM-41

    NASA Astrophysics Data System (ADS)

    Evans, Dylan; Sokol, Paul

    One-dimensional quantum liquids of 3He or 4He have generated recent interest for investigation in the Luttinger liquid model. Unfortunately, current studies lack a clear demonstration of definitively one-dimensional behavior. We propose using the templated, porous material, MCM-41, as a host for an atomic Luttinger liquid. In general, the pores of MCM-41 are too wide to provide a strictly one-dimensional environment, so we investigate preplating these pores with inert gases to effectively reduce their diameter. We present the results of studies of the structure of inert gases in MCM-41. Nitrogen sorption isotherms were used to characterize the sample. Then, using inert gases as adsorbates, we determined the minimum effective pore diameter that can be achieved in our sample before capillary condensation takes over. X-ray powder diffraction (XRD) was performed on the ideally preplated sample to investigate the structure of the adsorbates in the nanopores. The XRD measurements are compared to simulations of core-shell cylinder model scattering, and the validity of the model is assessed. The prospects for creating a definitively one-dimensional channel for the application of studying the structure and dynamics of helium confined in one dimension are discussed. This work was supported by the National Science Foundation under Grant DGE-1069091.

  5. Measurement of Fatigue Crack Growth Relationships in Hydrogen Gas for Pressure Swing Adsorber Vessel Steels

    SciTech Connect

    Somerday, Brian P.; Barney, Monica

    2014-12-04

    We measured the hydrogen-assisted fatigue crack growth rates (da/dN) for SA516 Grade 70 steel as a function of stress-intensity factor range (ΔK) and load-cycle frequency to provide life-prediction data relevant to pressure swing adsorber (PSA) vessels. For ΔK values up to 18.5 MPa m1/2, the baseline da/dN versus ΔK relationship measured at 1Hz in 2.8 MPa hydrogen gas represents an upper bound with respect to crack growth rates measured at lower frequency. However, at higher ΔK values, we found that the baseline da/dN data had to be corrected to account for modestly higher crack growth rates at the lower frequencies relevant to PSA vessel operation.

  6. Measurement of Fatigue Crack Growth Relationships in Hydrogen Gas for Pressure Swing Adsorber Vessel Steels

    DOE PAGESBeta

    Somerday, Brian P.; Barney, Monica

    2014-12-04

    We measured the hydrogen-assisted fatigue crack growth rates (da/dN) for SA516 Grade 70 steel as a function of stress-intensity factor range (ΔK) and load-cycle frequency to provide life-prediction data relevant to pressure swing adsorber (PSA) vessels. For ΔK values up to 18.5 MPa m1/2, the baseline da/dN versus ΔK relationship measured at 1Hz in 2.8 MPa hydrogen gas represents an upper bound with respect to crack growth rates measured at lower frequency. However, at higher ΔK values, we found that the baseline da/dN data had to be corrected to account for modestly higher crack growth rates at the lower frequenciesmore » relevant to PSA vessel operation.« less

  7. Hydrogen embrittlement of structural steels.

    SciTech Connect

    Somerday, Brian P.

    2010-06-01

    Carbon-manganese steels are candidates for the structural materials in hydrogen gas pipelines, however it is well known that these steels are susceptible to hydrogen embrittlement. Decades of research and industrial experience have established that hydrogen embrittlement compromises the structural integrity of steel components. This experience has also helped identify the failure modes that can operate in hydrogen containment structures. As a result, there are tangible ideas for managing hydrogen embrittement in steels and quantifying safety margins for steel hydrogen containment structures. For example, fatigue crack growth aided by hydrogen embrittlement is a key failure mode for steel hydrogen containment structures subjected to pressure cycling. Applying appropriate structural integrity models coupled with measurement of relevant material properties allows quantification of safety margins against fatigue crack growth in hydrogen containment structures. Furthermore, application of these structural integrity models is aided by the development of micromechanics models, which provide important insights such as the hydrogen distribution near defects in steel structures. The principal objective of this project is to enable application of structural integrity models to steel hydrogen pipelines. The new American Society of Mechanical Engineers (ASME) B31.12 design code for hydrogen pipelines includes a fracture mechanics-based design option, which requires material property inputs such as the threshold for rapid cracking and fatigue crack growth rate under cyclic loading. Thus, one focus of this project is to measure the rapid-cracking thresholds and fatigue crack growth rates of line pipe steels in high-pressure hydrogen gas. These properties must be measured for the base materials but more importantly for the welds, which are likely to be most vulnerable to hydrogen embrittlement. The measured properties can be evaluated by predicting the performance of the pipeline

  8. Separation of Rebaudiana A from Steviol glycoside using a polymeric adsorbent with multi-hydrogen bonding in a non-aqueous system.

    PubMed

    Ba, Jing; Zhang, Na; Yao, Lijuan; Ma, Ning; Wang, Chunhong

    2014-11-15

    Rebaudioside A (RA) and stevioside (SS) are the primary effective glycoside components in Stevia Rebaudiana. The RA glycoside is sweeter, and it tastes similarly to sucrose. Because extracts with a high RA content can be used as natural sweeteners for food additives approved by the FAO and FDA, RA should generate high market demand. In this study, an efficient method for separating RA was established based on the synergistic multi-hydrogen bonding interaction between a polymeric adsorbent and the RA glycoside. To overcome the destruction of the hydrophobic affinity required for the selective adsorption of RA, an innovative non-aqueous environment was established for adsorption and separation. To this end, an initial polymeric adsorbent composed of a glycidyl methacrylate and trimethylolpropane trimethacrylate (GMA-co-TMPTMA) copolymer matrix was synthesized, and polyethylene polyamine was employed as a functional reagent designed to react with the epoxy group on GME-co-TMPTMA to form a highly selective macroporous adsorbent. The effects of the different functional reagents and the solvent polarity on the adsorption selectivity for RA and SS, respectively, were investigated. Matching the structure of the polyethylene polyamine and sugar ligand on the glycoside molecule was essential in ensuring that the maximum synergistic interaction between adsorbent and adsorbate would be achieved. Moreover, the hydrogen-bonding force was observed to increase when the polarity of the adsorption solvent decreased. Therefore, among the synthesized macroporous polymeric adsorbents, the GTN4 adsorbent-bonding tetraethylenepentamine functional group provided the best separation in an n-butyl alcohol solution. Under the optimized gradient elution conditions, RA and SS can be effectively separated, and the contents of RA and SS increased from 33.5% and 51.5% in the initial crude extract to 95.4% and 78.2% after separation, respectively. Compared to conventional methods, the adsorption

  9. First-principles vdW-DF study on the enhanced hydrogen storage capacity of Pt-adsorbed graphene.

    PubMed

    Khosravi, Azadeh; Fereidoon, Abdolhosein; Ahangari, Morteza Ghorbanzadeh; Ganji, Masoud Darvish; Emami, Seyede Negar

    2014-05-01

    Ab initio vdW calculations with the DFT level of theory were used to investigate hydrogen (H₂) adsorption on Pt-adsorbed graphene (Pt-graphene). We have explored the most energetically favorable sites for single Pt atom adsorption on the graphene surface. The interaction of H₂ with the energetically favorable Pt-graphene system was then investigated. We found that H₂ physisorbs on pristine graphene with a binding energy of -0.05 eV, while the binding energy is enhanced to -1.98 eV when H₂ binds Pt-adsorbed graphene. We also found that up to four H₂ molecules can be adsorbed on the Pt-graphene system with a -0.74 eV/H₂ binding energy. The effect of graphene layer stretching on the Pt-graphene capacity/ability for hydrogen adsorption was evaluated. Our results show that the number of H₂ molecules adsorbed on the Pt-graphene surface rises to six molecules with a binding energy of approximately -0.29 eV/H₂. Our first-principles results reveal that the Young's modulus was slightly decreased for Pt adsorption on the graphene layer. The first-principles calculated Young's modulus for the H₂-adsorbed Pt-graphene system demonstrates that hydrogen adsorption can dramatically increase the Young's modulus of such systems. As a result, hydrogen adsorption on the Pt-graphene system might enhance the substrate strength. PMID:24777315

  10. Hydrogen adsorbed at N-polar InN: Significant changes in the surface electronic properties

    NASA Astrophysics Data System (ADS)

    Eisenhardt, A.; Krischok, S.; Himmerlich, M.

    2015-06-01

    The interaction of atomic hydrogen and ammonia with as-grown N-polar InN surfaces is investigated using in situ photoelectron spectroscopy. Changes in the surface electronic properties, including the band alignment and work function, as well as the chemical bonding states of the substrate and adsorbates are characterized. Ammonia molecules are dissociating at the InN surface, resulting in adsorption of hydrogen species. Consequently, the considerable changes of the chemical and electronic properties of the InN surface during ammonia interaction are almost identical to those found for adsorption of atomic hydrogen. In both cases, hydrogen atoms preferentially bond to surface nitrogen atoms, resulting in the disappearance of the nitrogen dangling-bond-related occupied surface state close to the valence band edge at ˜1.6 eV binding energy and the formation of new occupied electron states at the conduction band edge. Furthermore, a decrease in work function during adsorption from 4.7 to 3.7-3.8 eV, as well as an increase in the surface downward band bending by 0.3 eV, confirm that hydrogen is acting as electron donor at InN surfaces and therefore has to be considered as one main reason for the surface electron accumulation observed at N-polar InN samples exposed to ambient conditions, for example as the dissociation product of molecules. The measured formation and occupation of electronic states above the conduction band minimum occur in conjunction with the observed increase in surface electron concentration and underline the relationship between the energy position of occupied electron states and surface band alignment for InN as a small-band-gap semiconductor.

  11. Correlation effects in photoemission from adsorbates: Hydrogen on narrow-band metals

    NASA Astrophysics Data System (ADS)

    Rubio, J.; Refolio, M. C.; López Sancho, M. P.; López Sancho, J. M.

    1988-08-01

    This paper deals with photoemission from a one-level atom adsorbed on a metal surface within the context of Anderson's Hamiltonian. The occupied part of the adsorbate density of states (DOS) is calculated by means of a many-electron approach that incorporates the following ingredients: (1) A neat separation between final-state interactions and initial (ground-state) effects. (2) The method (a Lehmann-type representation) leans heavily on the resolvent operator, R(z)=(z-H)-1, which is obtained by expressing Dyson's equation in terms of the (N-1)-electron states (configurations) that diagonalize the hopping-free part of Anderson's Hamiltonian, thereby including the atomic correlation (U) in a nonperturbative way while expanding in powers of the hopping parameter (V). (3) By using blocking methods, the matrix elements of R are grouped into equivalent 4×4 matrix blocks, with residual interactions, which are then put in correspondence with the sites of a rectangular lattice, thereby making the problem isomorphic to that of finding a noninteracting one-electron Green's function in the Wannier representation. (4) Renormalized perturbation theory, along with a series of convolution theorems due to Hugenholtz and Van Hove, allows one to develop a self-consistency equation that automatically takes into account an infinite number of configurations. The resulting DOS is compared with photoemission spectra from hydrogen adsorbed on tungsten (half-filled metal band) and nickel (almost full). Correlation effects turn out to produce peaks at the appropriate energies, so that an unusually good agreement is found despite the featureless, semielliptical DOS adopted for the metal. Only gross features of this quantity, such as width, center, and occupation of the band, seem to matter in a photoemission calculation.

  12. Structural, energetic, and electronic properties of hydrogenated titanium clusters.

    PubMed

    Dhilip Kumar, T J; Tarakeshwar, P; Balakrishnan, N

    2008-05-21

    Hydrogen undergoes dissociative chemisorption on small titanium clusters. How the electronic structure of the cluster changes as a function of the number of adsorbed hydrogen atoms is an important issue in nanocatalysis and hydrogen storage. In this paper, a detailed theoretical investigation of the structural, energetic, and electronic properties of the icosahedral Ti13 cluster is presented as a function of the number of adsorbed hydrogen atoms. The results show that hydrogen loaded Ti13H20 and Ti13H30 clusters are exceptionally stable and are characterized by hydrogen multicenter bonds. In Ti13H20, the dissociated hydrogen atoms are bound to each of the 20 triangular faces of Ti13, while in Ti13H30, they are bound to the 30 Ti-Ti edges of Ti13. Consequently, the chemisorption and desorption energies of the Ti13H20 (1.93 eV, 3.10 eV) are higher than that of Ti13H30 (1.13 eV, 1.95 eV). While increased hydrogen adsorption leads to an elongation of the Ti-Ti bonds, there is a concomitant increase in the electrostatic interaction between the dissociated hydrogen atoms and the Ti13 cluster. This enhanced interaction results from the participation of the subsurface titanium atom at higher hydrogen concentrations. Illustrative results of hydrogen saturation on the larger icosahedral Ti55 cluster are also discussed. The importance of these results on hydrogen saturated titanium clusters in elucidating the mechanism of hydrogen adsorption and desorption in titanium doped complex metal hydrides is discussed. PMID:18500893

  13. Spin-polarized hydrogen adsorbed on the surface of superfluid {sup 4}He

    SciTech Connect

    Marín, J. M.; Boronat, J.; Markić, L. Vranješ

    2013-12-14

    The experimental realization of a thin layer of spin-polarized hydrogen H↓ adsorbed on top of the surface of superfluid {sup 4}He provides one of the best examples of a stable, nearly two-dimensional (2D) quantum Bose gas. We report a theoretical study of this system using quantum Monte Carlo methods in the limit of zero temperature. Using the full Hamiltonian of the system, composed of a superfluid {sup 4}He slab and the adsorbed H↓ layer, we calculate the main properties of its ground state using accurate models for the pair interatomic potentials. Comparing the results for the layer with the ones obtained for a strictly 2D setup, we analyze the departure from the 2D character when the density increases. Only when the coverage is rather small the use of a purely 2D model is justified. The condensate fraction of the layer is significantly larger than in 2D at the same surface density, being as large as 60% at the largest coverage studied.

  14. Revisiting the inelastic electron tunneling spectroscopy of single hydrogen atom adsorbed on the Cu(100) surface

    SciTech Connect

    Jiang, Zhuoling; Wang, Hao; Sanvito, Stefano; Hou, Shimin

    2015-12-21

    Inelastic electron tunneling spectroscopy (IETS) of a single hydrogen atom on the Cu(100) surface in a scanning tunneling microscopy (STM) configuration has been investigated by employing the non-equilibrium Green’s function formalism combined with density functional theory. The electron-vibration interaction is treated at the level of lowest order expansion. Our calculations show that the single peak observed in the previous STM-IETS experiments is dominated by the perpendicular mode of the adsorbed H atom, while the parallel one only makes a negligible contribution even when the STM tip is laterally displaced from the top position of the H atom. This propensity of the IETS is deeply rooted in the symmetry of the vibrational modes and the characteristics of the conduction channel of the Cu-H-Cu tunneling junction, which is mainly composed of the 4s and 4p{sub z} atomic orbitals of the Cu apex atom and the 1s orbital of the adsorbed H atom. These findings are helpful for deepening our understanding of the propensity rules for IETS and promoting IETS as a more popular spectroscopic tool for molecular devices.

  15. Revisiting the inelastic electron tunneling spectroscopy of single hydrogen atom adsorbed on the Cu(100) surface

    NASA Astrophysics Data System (ADS)

    Jiang, Zhuoling; Wang, Hao; Sanvito, Stefano; Hou, Shimin

    2015-12-01

    Inelastic electron tunneling spectroscopy (IETS) of a single hydrogen atom on the Cu(100) surface in a scanning tunneling microscopy (STM) configuration has been investigated by employing the non-equilibrium Green's function formalism combined with density functional theory. The electron-vibration interaction is treated at the level of lowest order expansion. Our calculations show that the single peak observed in the previous STM-IETS experiments is dominated by the perpendicular mode of the adsorbed H atom, while the parallel one only makes a negligible contribution even when the STM tip is laterally displaced from the top position of the H atom. This propensity of the IETS is deeply rooted in the symmetry of the vibrational modes and the characteristics of the conduction channel of the Cu-H-Cu tunneling junction, which is mainly composed of the 4s and 4pz atomic orbitals of the Cu apex atom and the 1s orbital of the adsorbed H atom. These findings are helpful for deepening our understanding of the propensity rules for IETS and promoting IETS as a more popular spectroscopic tool for molecular devices.

  16. Zero-point vibration of hydrogen adsorbed on Si and Pt surfaces.

    PubMed

    Fukutani, K; Itoh, A; Wilde, M; Matsumoto, M

    2002-03-18

    Hydrogen atoms adsorbed on Si(111) and Pt(111) were investigated by nuclear reaction analysis (NRA) using 1H(15N,alphagamma)12C. From measurements of the NRA spectrum at normal and tilted ion incidences the zero-point vibrational energies of H on Si(111) in the perpendicular and parallel directions were found to be 123.4+/-4.6 and 44.6+/-6.2 meV, respectively, which are consistent with harmonic potentials. The zero-point energies obtained for Pt(111)-H were 80.8+/-3.9 and 62.1+/-6.0 meV for perpendicular and parallel directions, respectively. These results indicate that the stretching mode is harmonic, while the bending mode is strongly anharmonic. PMID:11909413

  17. Correlation of adsorption isotherms of hydrogen isotopes on mordenite adsorbents using reactive vacancy solution theory

    SciTech Connect

    Munakata, K.; Nakamura, A.; Kawamura, Y.

    2015-03-15

    The authors have applied the isotherm equations derived from the reactive vacancy solution theory (RVST) to correlation of experimental and highly non-ideal adsorption isotherms of hydrogen and deuterium on a mordenite adsorbent, and have examined the ability of the isotherm equations to match this correlation. Several isotherm equations such as Langmuir, Freundlich, Toth, Vacancy Solution Theory and so forth were also tested, but they did not work. For the Langmuir-Freundlich equation tests have indicated that its 'ability to correlate' of the adsorption isotherms is not satisfactory. For the multi-site Langmuir-Freundlich (MSLF) equation the correlation of the isotherms appears to be somewhat improved but remains unsatisfactory. The results show that the isotherm equations derived from RVST can better correlate the experimental isotherms.

  18. Chiral modification of platinum: ab initio study of the effect of hydrogen coadsorption on stability and geometry of adsorbed cinchona alkaloids.

    PubMed

    Hahn, Konstanze R; Seitsonen, Ari P; Baiker, Alfons

    2015-11-01

    The cinchona alkaloids cinchonidine and cinchonine belong to the most efficient chiral modifiers for the noble metal-catalyzed enantioselective hydrogenation of C=O and C=C bonds. Under reaction conditions these modifiers are coadsorbed on the noble metal surface with hydrogen. Using density functional theory, we studied the effect of coadsorbed hydrogen on the adsorption mode of cinchonidine and cinchonine on a Pt(111) surface at different hydrogen coverages. The theoretical study indicates that the presence of coadsorbed hydrogen affects both the adsorption geometry as well as the stability of the adsorbed cinchona alkaloids. At all hydrogen coverages the cinchona alkaloids are found to be adsorbed via anchoring of the quinoline moiety. In the absence of hydrogen as well as at low hydrogen coverage the quinoline moiety adsorbs nearly parallel to the surface, whereas at higher hydrogen coverage it becomes tilted. Higher hydrogen coverage as well as partial hydrogenation of the quinoline part of the cinchona alkaloid and hydrogen transfer to the C[double bond, length as m-dash]C double bond at 10, 11 position of the quinuclidine moiety destabilize the adsorbed cinchona alkaloid, whereas hydrogen transfer to the nitrogen atom of the quinoline and the quinuclidine moiety stabilizes the adsorbed molecule. The stability as well as the adsorption geometry of the cinchona alkaloids are affected by the coadsorbed hydrogen and are proposed to influence the efficiency of the enantiodifferentiating ability of the chirally modified platinum surface. PMID:26426825

  19. Structure formation in adsorbed overlayers comprising functional cross-shaped molecules: A Monte Carlo study

    NASA Astrophysics Data System (ADS)

    Kasperski, Adam; Nieckarz, Damian; Szabelski, Paweł

    2015-11-01

    Surface confined self-assembly of functional star-shaped organic molecules is a promising method to create nanoporous networks with tailorable structure and functions. In this work we use the Monte Carlo simulation method to demonstrate how the morphology of these supramolecular assemblies can be tuned by manipulating intrinsic parameters of the building blocks and modified by the presence of co-adsorbed metal atoms. To that purpose we study the 2D self-assembly of planar cruciform molecules modeled as collections of interconnected segments, some of which were activated to represent discrete interaction centers. We consider a few exemplary adsorbed systems in which the molecules with different size, aspect ratio and intramolecular distribution of active centers form superstructures stabilized by short-range segment-segment interactions or by metal-segment interactions. These two situations correspond to supramolecular assemblies sustained by, for example, hydrogen bonding and metal-organic ligand coordination, respectively. The simulated results show that proper encoding of intramolecular interactions into the cruciform building bricks allows for directing the self-assembly towards largely diversified structures ranging from nanoclusters to porous grids. The obtained findings can facilitate designing and optimization of molecular networks comprising cross-shaped units including functionalized porphyrins and phthalocyanines and they can be helpful in preliminary selection of these building blocks.

  20. Geometric and electronic structures of potassium-adsorbed rubrene complexes

    SciTech Connect

    Li, Tsung-Lung; Lu, Wen-Cai

    2015-06-28

    The geometric and electronic structures of potassium-adsorbed rubrene complexes are studied in this article. It is found that the potassium-rubrene (K{sub 1}RUB) complexes inherit the main symmetry characteristics from their pristine counterparts and are thus classified into D{sub 2}- and C{sub 2h}-like complexes according to the relative orientations of the four phenyl side groups. The geometric structures of K{sub 1}RUB are governed by two general effects on the total energy: Deformation of the carbon frame of the pristine rubrene increases the total energy, while proximity of the potassium ion to the phenyl ligands decreases the energy. Under these general rules, the structures of D{sub 2}- and C{sub 2h}-like K{sub 1}RUB, however, exhibit their respective peculiarities. These peculiarities can be illustrated by their energy profiles of equilibrium structures. For the potassium adsorption-sites, the D{sub 2}-like complexes show minimum-energy basins, whereas the C{sub 2h}-like ones have single-point minimum-energies. If the potassium atom ever has the energy to diffuse from the minimum-energy site, the potassium diffusion path on the D{sub 2}-like complexes is most likely along the backbone in contrast to the C{sub 2h}-like ones. Although the electronic structures of the minimum-energy structures of D{sub 2}- and C{sub 2h}-like K{sub 1}RUB are very alike, decompositions of their total spectra reveal insights into the electronic structures. First, the spectral shapes are mainly determined by the facts that, in comparison with the backbone carbons, the phenyl carbons have more uniform chemical environments and far less contributions to the electronic structures around the valence-band edge. Second, the electron dissociated from the potassium atom mainly remains on the backbone and has little effects on the electronic structures of the phenyl groups. Third, the two phenyls on the same side of the backbone as the potassium atom have more similar chemical environments

  1. Geometric and electronic structures of potassium-adsorbed rubrene complexes

    NASA Astrophysics Data System (ADS)

    Li, Tsung-Lung; Lu, Wen-Cai

    2015-06-01

    The geometric and electronic structures of potassium-adsorbed rubrene complexes are studied in this article. It is found that the potassium-rubrene (K1RUB) complexes inherit the main symmetry characteristics from their pristine counterparts and are thus classified into D2- and C2h-like complexes according to the relative orientations of the four phenyl side groups. The geometric structures of K1RUB are governed by two general effects on the total energy: Deformation of the carbon frame of the pristine rubrene increases the total energy, while proximity of the potassium ion to the phenyl ligands decreases the energy. Under these general rules, the structures of D2- and C2h-like K1RUB, however, exhibit their respective peculiarities. These peculiarities can be illustrated by their energy profiles of equilibrium structures. For the potassium adsorption-sites, the D2-like complexes show minimum-energy basins, whereas the C2h-like ones have single-point minimum-energies. If the potassium atom ever has the energy to diffuse from the minimum-energy site, the potassium diffusion path on the D2-like complexes is most likely along the backbone in contrast to the C2h-like ones. Although the electronic structures of the minimum-energy structures of D2- and C2h-like K1RUB are very alike, decompositions of their total spectra reveal insights into the electronic structures. First, the spectral shapes are mainly determined by the facts that, in comparison with the backbone carbons, the phenyl carbons have more uniform chemical environments and far less contributions to the electronic structures around the valence-band edge. Second, the electron dissociated from the potassium atom mainly remains on the backbone and has little effects on the electronic structures of the phenyl groups. Third, the two phenyls on the same side of the backbone as the potassium atom have more similar chemical environments than the other two on the opposite side, which leads to the largely enhanced

  2. Structure of Non-Equilibrium Adsorbed Polymer Layers

    NASA Astrophysics Data System (ADS)

    O'Shaughnessy, Ben; Vavylonis, Dimitrios

    2004-03-01

    Equilibrium polymer adsorption has been widely studied theoretically. Many experiments however implicate strong non-equilibrium effects for monomer sticking energies somewhat larger than kT, the most common case. The structure and slow dynamics in these layers is not understood. We analyze theoretically non-equilibrium layers from dilute solutions in the limit of irreversible monomer adsorption. We find the density profile ˜ z-4/3 and loop distribution ˜ s-11/5 of the resulting layer are no different to equilibrium. However, single chain statistics are radically different: the layer consists of a flat inner portion of fully collapsed chains plus an outer part whose chains make only fN surface contacts where N is chain length. The contact fractions f follow a broad distribution, P(f) ˜ f-4/5, consistent with experiment [H. M. Schneider et al, Langmuir 12, 994 (1996)], and the lateral size R of adsorbed chains is of order the bulk coil size, R ˜ N^3/5. For equilibrium layers, by contrast, P has a unique peak at a value of f of order unity, while R ˜ N^1/2 is significantly less. The relaxation of a non-equilibrium layer towards equilibrium thus entails chain shrinkage and tighter binding. We speculate that the observed decrease of bulk-layer chain exchange rates with increasing aging reflects these internal layer dynamics.

  3. Quantitative analysis of desorption and decomposition kinetics of formic acid on Cu(111): The importance of hydrogen bonding between adsorbed species

    SciTech Connect

    Shiozawa, Yuichiro; Koitaya, Takanori; Mukai, Kozo; Yoshimoto, Shinya; Yoshinobu, Jun

    2015-12-21

    Quantitative analysis of desorption and decomposition kinetics of formic acid (HCOOH) on Cu(111) was performed by temperature programmed desorption (TPD), X-ray photoelectron spectroscopy, and time-resolved infrared reflection absorption spectroscopy. The activation energy for desorption is estimated to be 53–75 kJ/mol by the threshold TPD method as a function of coverage. Vibrational spectra of the first layer HCOOH at 155.3 K show that adsorbed molecules form a polymeric structure via the hydrogen bonding network. Adsorbed HCOOH molecules are dissociated gradually into monodentate formate species. The activation energy for the dissociation into monodentate formate species is estimated to be 65.0 kJ/mol at a submonolayer coverage (0.26 molecules/surface Cu atom). The hydrogen bonding between adsorbed HCOOH species plays an important role in the stabilization of HCOOH on Cu(111). The monodentate formate species are stabilized at higher coverages, because of the lack of vacant sites for the bidentate formation.

  4. Quantitative analysis of desorption and decomposition kinetics of formic acid on Cu(111): The importance of hydrogen bonding between adsorbed species

    NASA Astrophysics Data System (ADS)

    Shiozawa, Yuichiro; Koitaya, Takanori; Mukai, Kozo; Yoshimoto, Shinya; Yoshinobu, Jun

    2015-12-01

    Quantitative analysis of desorption and decomposition kinetics of formic acid (HCOOH) on Cu(111) was performed by temperature programmed desorption (TPD), X-ray photoelectron spectroscopy, and time-resolved infrared reflection absorption spectroscopy. The activation energy for desorption is estimated to be 53-75 kJ/mol by the threshold TPD method as a function of coverage. Vibrational spectra of the first layer HCOOH at 155.3 K show that adsorbed molecules form a polymeric structure via the hydrogen bonding network. Adsorbed HCOOH molecules are dissociated gradually into monodentate formate species. The activation energy for the dissociation into monodentate formate species is estimated to be 65.0 kJ/mol at a submonolayer coverage (0.26 molecules/surface Cu atom). The hydrogen bonding between adsorbed HCOOH species plays an important role in the stabilization of HCOOH on Cu(111). The monodentate formate species are stabilized at higher coverages, because of the lack of vacant sites for the bidentate formation.

  5. Structure of collagen adsorbed on a model implant surface resolved by polarization modulation infrared reflection-absorption spectroscopy.

    PubMed

    Brand, Izabella; Habecker, Florian; Ahlers, Michael; Klüner, Thorsten

    2015-03-01

    The polarization modulation infrared reflection-absorption spectra of collagen adsorbed on a titania surface and quantum chemical calculations are used to describe components of the amide I mode to the protein structure at a sub-molecular level. In this study, imino acid rich and poor fragments, representing the entire collagen molecule, are taken into account. The amide I mode of the collagen triple helix is composed of three absorption bands which involve: (i) (∼1690cm(-1)) the CO stretching modes at unhydrated groups, (ii) (1655-1673cm(-1)) the CO stretching at carbonyl groups at imino acids and glycine forming intramolecular hydrogen bonds with H atoms at both NH2 and, unusual for proteins, CH2 groups at glycine at a neighbouring chain and (iii) (∼1640cm(-1)) the CO stretching at carbonyl groups forming hydrogen bonds between two, often charged, amino acids as well as hydrogen bonds to water along the entire helix. The IR spectrum of films prepared from diluted solutions (c<50μgml(-1)) corresponds to solution spectra indicating that native collagen molecules interact with water adsorbed on the titania surface. In films prepared from solutions (c⩾50μgml(-1)) collagen multilayers are formed. The amide I mode is blue-shifted by 18cm(-1), indicating that intramolecular hydrogen bonds at imino acid rich fragments are weakened. Simultaneous red-shift of the amide A mode implies that the strength of hydrogen bonds at the imino acid poor fragments increases. Theoretically predicted distortion of the collagen structure upon adsorption on the titania surface is experimentally confirmed. PMID:25498816

  6. Study of the conformational change of adsorbed proteins on biomaterial surfaces using hydrogen-deuterium exchange with mass spectroscopy.

    PubMed

    Kim, Jinku

    2016-05-01

    There is no doubt that protein adsorption plays a crucial role in determining biocompatibility of biomaterials. Despite the information of the identity and composition of blood plasma/serum proteins adsorbed on surfaces of biomaterials to understand which proteins are involved in blood/biomaterial interactions, it still does not provide information about the conformations and orientations of adsorbed protein, which are very important in determining biological responses to biomaterials. Therefore, our laboratory has developed an experimental technology to probe protein conformations on materials that is applicable to mixtures of proteins. Herein, the new application of hydrogen/deuterium (H/D) exchange combined with mass spectrometry was applied to determine conformational changes of adsorbed proteins at biomaterial surfaces. The results suggest that there may be a significant conformational change in adsorbed proteins at 'low' bulk concentrations that leads to a large change in the kinetics of H/D exchange as compared to 'high' bulk concentrations. This technique may eventually be useful for the study of the kinetics of protein conformational changes. PMID:26896658

  7. Adsorbate modification of the structural, electronic, and magnetic properties of ferromagnetic fcc {110} surfaces

    NASA Astrophysics Data System (ADS)

    Gunn, D. S. D.; Jenkins, Stephen J.

    2011-03-01

    We identify trends in structural, electronic, and magnetic modifications that occur on ferromagnetic {110} surfaces upon varying either the substrate material or the adsorbate species. First, we have modeled the adsorption of several first-row p-block elements on the surface of fcc Co{110} at two coverages [0.5 and 1.0 monolayer (ML)]. All adsorbates were found to expand the distance between the first and second substrate layers and to contract the distance between the second and third layers. The energetic location of a characteristic trough in the density-of-d-states difference plot correlates with the direction of the adsorbate magnetic coupling to the surface, and a trend of antiferromagnetic to ferromagnetic coupling to the surface was observed across the elements from boron to fluorine. A high fluorine adatom coverage (1.0 ML) was found to enhance the surface spin magnetic moment by 11%. Second, we also calculate and contrast adsorption of 0.5 and 1.0 ML of carbon, nitrogen, and oxygen adatoms on fcc iron, cobalt, and nickel {110} surfaces and compare the structural, electronic, and magnetic properties of these systems. Carbon and nitrogen are found to couple antiferromagnetically, and oxygen ferromagnetically, to all surfaces. It was found that antiferromagnetically coupled adsorbates retained their largest spin moment values on iron, whereas ferromagnetically coupled adsorbates possessed their lowest moments on this surface. The strongly localized influence of these adsorbates is clearly illustrated in partial density-of-states plots for the surface atoms.

  8. Eley-Rideal surface chemistry: Direct reactivity of gas phase atomic hydrogen with adsorbed species

    SciTech Connect

    Weinberg, W.H.

    1996-10-01

    Selected examples of Eley-Rideal surface chemistry are presented in order to review this field. Reactions on Ru(100) only are considered. The specific examples employed are: (i) hydrogenation of oxygen atoms, (ii) hydrogenation of CO, (iii) formation of dihydrogen, and (iv) hydrogenation of formate. 80 refs., 8 figs.

  9. Hydrocarbon dissociation on palladium studied with a hydrogen sensitive Pd-metal-oxide-semiconductor structure

    NASA Astrophysics Data System (ADS)

    Dannetun, H.; Lundström, I.; Petersson, L.-G.

    1988-01-01

    The polycrystalline Pd surface of a hydrogen sensitive palladium-silicon dioxide-silicon [Pd-MOS (metal-oxide-semiconductor)] structure has been exposed to small unsaturated hydrocarbons in the temperature range 300-500 K. Apart from the hydrogen response of the Pd-MOS structure also work function (ΔΦ) and electron energy-loss studies were performed. At 500 K the hydrocarbons dissociate completely upon adsorption and produce a surface with atomically adsorbed carbon. The Pd-MOS structure can be used to observe both the dehydrogenation of the hydrocarbon molecules and the process of carbon adsorbing on the palladium surface. The sticking coefficient at this temperature for all hydrocarbons is close to unity. Furthermore, the hydrogen sensitivity of the structure is not drastically reduced by the adsorbed carbon. If the hydrocarbon adsorption is performed at 300 K there is still, at least on the initially clean surface, a large dehydrogenation. The dissociation is, however, not at all complete and there are considerable amounts of hydrocarbon species adsorbed for each gas. The induced work function shifts due to the different hydrocarbons vary from -1.0 to -1.7 eV. The hydrogen sensitivity of the Pd-MOS structure is reduced for growing hydrocarbon coverages and disappears completely for work function shifts of -1.7 eV.

  10. Structural investigations of adsorbed films of Methyl Halides on Boron Nitride

    NASA Astrophysics Data System (ADS)

    Sprung, Michael; Freitag, Andrea; Hanson, Jonathan; Larese, John

    2000-03-01

    The Methyl Halides are a group of molecules whose properties of thin adsorbed films on Graphite have been well characterized. Boron Nitride forms a hexagonal structure with a slightly larger (about 2% ) unit cell than Graphite. The study of thin films of Methyl Halides (CH_3R, R=Cl, Br and I) on Boron Nitride is motivated by the hope to gain a better understanding of adsorbate-substrate interaction. High resolution adsorption isotherms and x-ray powder diffraction have been used to investigate the monolayer structures of CH_3R adsorbed on Boron Nitride. The experiments were carried out at the Beamline X7B of the NSLS. The gases were dosed onto the sample with an automated gas handling system, and a Mar345 image plate detector was used to collect the data. The measurements were performed in a temperature range between 50 and 175 K. All three adsorbates form a solid monolayer structure on Boron Nitride at low temperature. The structure of Methyl Chloride and Methyl Bromide is very similar to the high-density structure of CH_3Cl on Graphite. This is surprising for CH_3Br because it forms a different structure on Graphite. Methyl Iodide forms similar structures on both substrates.

  11. Scanning electrochemical microscopy: surface interrogation of adsorbed hydrogen and the open circuit catalytic decomposition of formic acid at platinum.

    PubMed

    Rodríguez-López, Joaquín; Bard, Allen J

    2010-04-14

    The surface interrogation mode of scanning electrochemical microscopy (SECM) is extended to the in situ quantification of adsorbed hydrogen, H(ads), at polycrystalline platinum. The methodology consists of the production, at an interrogator electrode, of an oxidized species that is able to react with H(ads) on the Pt surface and report the amounts of this adsorbate through the SECM feedback response. The technique is validated by comparison to the electrochemical underpotential deposition (UPD) of hydrogen on Pt. We include an evaluation of electrochemical mediators for their use as oxidizing reporters for adsorbed species at platinum; a notable finding is the ability of tetramethyl-p-phenylenediamine (TMPD) to oxidize (interrogate) H(ads) on Pt at low pH (0.5 M H(2)SO(4) or 1 M HClO(4)) and with minimal background effects. As a case study, the decomposition of formic acid (HCOOH) in acidic media at open circuit on Pt was investigated. Our results suggest that formic acid decomposes at the surface of unbiased Pt through a dehydrogenation route to yield H(ads) at the Pt surface. The amount of H(ads) depended on the open circuit potential (OCP) of the Pt electrode at the time of interrogation; at a fixed concentration of HCOOH, a more negative OCP yielded larger amounts of H(ads) until reaching a coulomb limiting coverage close to 1 UPD monolayer of H(ads). The introduction of oxygen into the cell shifted the OCP to more positive potentials and reduced the quantified H(ads); furthermore, the system was shown to be chemically reversible, as several interrogations could be run consecutively and reproducibly regardless of the path taken to reach a given OCP. PMID:20225806

  12. Hydrogen uptake in vanadium first wall structures

    SciTech Connect

    Simonen, E.P.; Jones, R.H.

    1996-04-01

    Evaluation of hydrogen sources and transport are needed to assess the mechanical integrity of V structures. Two sources include implantation and transmutation. The proposed coatings for the DEMO and ITER first wall strongly influence retention of hydrogen isotopes. Upper limit calculations of hydrogen inventory were based on recycling to the plasma and an impermeable coolant-side coating. Hydrogen isotope concentrations in V approaching 1,000 appm may be activated.

  13. Evaluation of Hydrogen Isotope Exchange Methodology on Adsorbents for Tritium Removal

    SciTech Connect

    Morgan, Gregg A.; Xiao, S. Xin

    2015-03-06

    The Savannah River National Laboratory has demonstrated a potential process that can be used to remove tritium from tritiated water using Pt-catalyzed molecular sieves. The process is an elemental isotope exchange process in which H2 (when flowed through the molecular sieves) will exchange with the adsorbed water, D2O, leaving H2O adsorbed on the molecular sieves. Various formulations of catalyzed molecular sieve material were prepared using two different techniques, Pt-implantation and Pt-ion exchange. This technology has been demonstrated for a protium (H) and deuterium (D) system, but can also be used for the removal of tritium from contaminated water (T2O, HTO, and DTO) using D2 (or H2)

  14. Evaluation of Hydrogen Isotope Exchange Methodology on Adsorbents for Tritium Removal

    DOE PAGESBeta

    Morgan, Gregg A.; Xiao, S. Xin

    2015-03-06

    The Savannah River National Laboratory has demonstrated a potential process that can be used to remove tritium from tritiated water using Pt-catalyzed molecular sieves. The process is an elemental isotope exchange process in which H2 (when flowed through the molecular sieves) will exchange with the adsorbed water, D2O, leaving H2O adsorbed on the molecular sieves. Various formulations of catalyzed molecular sieve material were prepared using two different techniques, Pt-implantation and Pt-ion exchange. This technology has been demonstrated for a protium (H) and deuterium (D) system, but can also be used for the removal of tritium from contaminated water (T2O, HTO,more » and DTO) using D2 (or H2)« less

  15. Evaluation of hydrogen isotope exchange methodology on adsorbents for tritium removal

    SciTech Connect

    Morgan, G.A.; Xin Xiao, S.

    2015-03-15

    The Savannah River National Laboratory has demonstrated a potential process that can be used to remove tritium from tritiated water using Pt-catalyzed molecular sieves. The process is an elemental isotope exchange process in which H{sub 2} (when flowed through the molecular sieves) will exchange with the adsorbed water, D{sub 2}O, leaving H{sub 2}O adsorbed on the molecular sieves. Various formulations of catalyzed molecular sieve material were prepared using two different techniques, Pt-implantation and Pt-ion exchange. This technology has been demonstrated for a protium (H) and deuterium (D) system, but can also be used for the removal of tritium from contaminated water (T{sub 2}O, HTO, and DTO) using D{sub 2} (or H{sub 2}). (authors)

  16. Infrared spectroscopy of water clusters co-adsorbed with hydrogen molecules on a sodium chloride film

    NASA Astrophysics Data System (ADS)

    Yamakawa, Koichiro; Fukutani, Katsuyuki

    2016-06-01

    Hydrogen gas containing a trace of water vapor was dosed on a vacuum-evaporated sodium chloride film at 13 K, and water clusters formed on the substrate were investigated by infrared absorption spectroscopy. Absorption bands due to (H2O)n clusters with n = 3-6 and an induced absorption band due to hydrogen were clearly observed. With increasing gas dosage, the intensities of the cluster bands increased linearly while the intensity of the hydrogen band was constant. This suggests that the water clusters were formed in two-dimensional matrices of hydrogen. We found that the water clusters did exist on the surface upon heating even after the hydrogen molecules had desorbed. A further rise of the substrate temperature up to 27 K yielded the formation of larger clusters, (H2O)n with n > 6 . We also discuss the origins of the two bands of the trimer in terms of pseudorotation and a metastable isomer.

  17. In situ laser Raman spectra of iron phthalocyanine adsorbed on copper and gold electrodes. [Electronic structure

    SciTech Connect

    Melendres, C.A.; Rios, C.B.; Feng, X.; McMasters, R.

    1983-01-01

    Raman spectra of iron phthalocyanine (FePc) and its tetrasulfonated derivative (FeTSPc) adsorbed on copper and gold electrodes have been observed in situ in 0.05 M H/sub 2/SO/sub 4/ solution. Results confirm the authors previous finding on the coordination of FePc to water molecules to solution. Evidence suggests that the iron phthalocyanines are probably oriented with their planes parallel to the electrode surface even in immersed electrodes. A decrease in intensity and broadening of some vibrational bands are observed on increasing cathodic polarization; these are attributed to a lifting of the degeneracy of the vibrational modes due to a change in symmetry of the adsorbed molecules brought about by polarization induced by the double-layer field. The effect of carbon on the Raman spectra is discussed. The iron phthalocyanines appear to be stable at potentials close to hydrogen evolution in the absence of oxygen. 18 references, 8 figures.

  18. Interlocking order parameter fluctuations in structural transitions between adsorbed polymer phases.

    PubMed

    Martins, Paulo H L; Bachmann, Michael

    2016-01-21

    By means of contact-density chain-growth simulations of a simple coarse-grained lattice model for a polymer grafted at a solid homogeneous substrate, we investigate the complementary behavior of the numbers of surface-monomer and monomer-monomer contacts under various solvent and thermal conditions. This pair of contact numbers represents an appropriate set of order parameters that enables the distinct discrimination of significantly different compact phases of polymer adsorption. Depending on the transition scenario, these order parameters can interlock in perfect cooperation. The analysis helps understand the transitions from compact filmlike adsorbed polymer conformations into layered morphologies and dissolved adsorbed structures, respectively, in more detail. PMID:26690091

  19. Structure and Dynamics of Proteins Adsorbed to Biomaterial Interfaces

    SciTech Connect

    Drobny, Gary P.; Long, Joanna R.; Shaw, Wendy J.; Cotten, Myriam L.; Stayton, Partick S.

    2002-10-31

    Biomineralization, defined as the organized deposition of inorganic materials in the cellular or extracellular matrix, may be as simple a process as the formation of an iron oxide crystal in the vesicle of a magnetobacterium, or as complex a process as the formation of the intricate calcium carbonate and calcium phosphate structures found in marine coccoliths, invertebrate shells, vertebrate skeletons and teeth. The phenomenon of Biomineralization has attracted a great deal of attention recently from the materials science community, which seeks to understand the way in which inorganic biological composites are synthesized and processed in nature.

  20. Solution- and Adsorbed-State Structural Ensembles Predicted for the Statherin-Hydroxyapatite System

    PubMed Central

    Masica, David L.; Gray, Jeffrey J.

    2009-01-01

    Abstract We have developed a multiscale structure prediction technique to study solution- and adsorbed-state ensembles of biomineralization proteins. The algorithm employs a Metropolis Monte Carlo-plus-minimization strategy that varies all torsional and rigid-body protein degrees of freedom. We applied the technique to fold statherin, starting from a fully extended peptide chain in solution, in the presence of hydroxyapatite (HAp) (001), (010), and (100) monoclinic crystals. Blind (unbiased) predictions capture experimentally observed macroscopic and high-resolution structural features and show minimal statherin structural change upon adsorption. The dominant structural difference between solution and adsorbed states is an experimentally observed folding event in statherin's helical binding domain. Whereas predicted statherin conformers vary slightly at three different HAp crystal faces, geometric and chemical similarities of the surfaces allow structurally promiscuous binding. Finally, we compare blind predictions with those obtained from simulation biased to satisfy all previously published solid-state NMR (ssNMR) distance and angle measurements (acquired from HAp-adsorbed statherin). Atomic clashes in these structures suggest a plausible, alternative interpretation of some ssNMR measurements as intermolecular rather than intramolecular. This work demonstrates that a combination of ssNMR and structure prediction could effectively determine high-resolution protein structures at biomineral interfaces. PMID:19383454

  1. Theoretical study of the dynamics of atomic hydrogen adsorbed on graphene multilayers

    NASA Astrophysics Data System (ADS)

    Moaied, Mohammed; Moreno, J. A.; Caturla, M. J.; Ynduráin, Félix; Palacios, J. J.

    2015-04-01

    We present a theoretical study of the dynamics of H atoms adsorbed on graphene bilayers with Bernal stacking. First, through extensive density functional theory calculations, including van der Waals interactions, we obtain the activation barriers involved in the desorption and migration processes of a single H atom. These barriers, along with attempt rates and the energetics of H pairs, are used as input parameters in kinetic Monte Carlo simulations to study the time evolution of an initial random distribution of adsorbed H atoms. The simulations reveal that, at room temperature, H atoms occupy only one sublattice before they completely desorb or form clusters. This sublattice selectivity in the distribution of H atoms may last for sufficiently long periods of time upon lowering the temperature down to 0 ∘C . The final fate of the H atoms, namely, desorption or cluster formation, depends on the actual relative values of the activation barriers which can be tuned by doping. In some cases, a sublattice selectivity can be obtained for periods of time experimentally relevant even at room temperature. This result shows the possibility for observation and applications of the ferromagnetic state associated with such distribution.

  2. Hydrogen bonded structures in organic amine oxalates

    NASA Astrophysics Data System (ADS)

    Vaidhyanathan, R.; Natarajan, S.; Rao, C. N. R.

    2002-05-01

    Oxalates of n-propylamine, n-butylamine, ethylenediamine, 1,4-butanediamine, piperazine, guanidine and 1,4-diazabicyclo[2,2,2]octane (DABCO) have been synthesized and characterized by single crystal X-ray diffraction and other techniques. The amine oxalates show different types of hydrogen bonded networks, linear hydrogen bonded chains characterizing the oxalates of the first five amines. Guanidinium oxalate has a sheet like structure while DABCO oxalate has dimeric hydrogen bonded rings. Hydrogen bonded structures of these oxalates are discussed in detail, besides relating their thermal stability to the strengths of the networks.

  3. Formation of 1D adsorbed water structures on CaO(001)

    NASA Astrophysics Data System (ADS)

    Zhao, Xunhua; Bhattacharya, Saswata; Ghiringhelli, Luca M.; Levchenko, Sergey V.; Scheffler, Matthias

    2015-03-01

    Understanding the interaction of water with oxide surfaces is of fundamental importance for basic and engineering sciences. Recently, a spontaneous formation of one-dimensional (1D) adsorbed water structures have been observed on CaO(001). Interestingly, at other alkaline earth metal oxides, in particular MgO(001) and SrO(001), such structures have not been found experimentally. We calculate the relative stability of adsorbed water structures on the three oxides using density-functional theory combined with the ab initio atomistic thermodynamics. Low-energy structures at different coverages are obtained with a first-principles genetic algorithm. Finite-temperature vibrational spectra are calculated using ab initio molecular dynamics. We find a range of (T, p) conditions where 1D structures are thermodynamically stable on CaO(001). The orientation and vibrational spectra of the 1D structures are in agreement with the experiments. The formation of the 1D structures is found to be actuated by a symmetry breaking in the adsorbed water tetramer, as well as by a balance between water-water and water-substrate interactions, determined by the lattice constant of the oxide.

  4. Persistent hydrogen bonding in polymorphic crystal structures.

    PubMed

    Galek, Peter T A; Fábián, László; Allen, Frank H

    2009-02-01

    The significance of hydrogen bonding and its variability in polymorphic crystal structures is explored using new automated structural analysis methods. The concept of a chemically equivalent hydrogen bond is defined, which may be identified in pairs of structures, revealing those types of bonds that may persist, or not, in moving from one polymorphic form to another. Their frequency and nature are investigated in 882 polymorphic structures from the Cambridge Structural Database. A new method to compare conformations of equivalent molecules is introduced and applied to derive distinct subsets of conformational and packing polymorphs. The roles of chemical functionality and hydrogen-bond geometry in persistent interactions are systematically explored. Detailed structural comparisons reveal a large majority of persistent hydrogen bonds that are energetically crucial to structural stability. PMID:19155561

  5. Molecular Association and Structure of Hydrogen Peroxide.

    ERIC Educational Resources Information Center

    Giguere, Paul A.

    1983-01-01

    The statement is sometimes made in textbooks that liquid hydrogen peroxide is more strongly associated than water, evidenced by its higher boiling point and greater heat of vaporization. Discusses these and an additional factor (the nearly double molecular mass of the peroxide), focusing on hydrogen bonds and structure of the molecule. (JN)

  6. Hydrogen structures in heavily hydrogenated crystalline and amorphous silicon

    SciTech Connect

    Jackson, W.G.; Franz, A.; Chabal, Y.; Weldon, M.K.; Jin, H.C.; Abelson, J.R.

    1998-12-31

    The hydrogen binding energy distribution and IR spectra of hydrogen platelets in c-Si have been measured and compared to H in other forms of silicon including hydrogenated polycrystalline and amorphous Si. The binding distribution for platelet containing samples, determined using H evolution, exhibits two peaks: a bulk peak at 1.8--1.9 eV below the transport barrier, and a second possibly surface related peak 1.8--1.9 eV below the surface evolution barrier. The bulk peak grows at 250 C and is consistent with calculated energies for platelet structures. The same two evolution peaks are found in hydrogenated polycrystalline Si and amorphous silicon. The IR spectra for heavily hydrogenated c-Si are dominated by the stretching modes at 2076 and 2128 cm{sup {minus}1}. Most surprisingly there appears to be a strong mode at 856 cm{sup {minus}1} which is associated with a deformation mode of SiH{sub 3}. Even more surprising, this SiH{sub 3} 856 cm{sup {minus}1} mode remains until 550 C indicating that the SiH{sub 3} containing structures are rather stable.

  7. Ab initio study of 3d, 4d, and 5d transition metal adatoms and dimers adsorbed on hydrogen-passivated zigzag graphene nanoribbons

    NASA Astrophysics Data System (ADS)

    Longo, R. C.; Carrete, J.; Gallego, L. J.

    2011-06-01

    We performed extensive density-functional calculations of the structural, electronic, and magnetic properties of systems comprising one or two adatoms of Fe, Co, Ni, Ru, Rh, Pd, or Pt adsorbed on a hydrogen-passivated zigzag graphene nanoribbon (GNR). In all cases, the most stable structure featured the adatom(s) at positions near one of the edges of the GNR. However, whereas in the most stable structures of the single-adatom systems Ni/GNR, Ru/GNR, Rh/GNR, and Pd/GNR the adatom was located above a bay of the zigzag edge, Fe/GNR and Co/GNR were found to be most stable when the adatoms were at a first-row hole site, while the two configurations were nearly equienergetic for Pt/GNR. Similarly, whereas the most stable structures of the two-adatom systems Ni2/GNR, Ru2/GNR, Rh2/GNR, and Pd2/GNR had the adatoms above two neighboring edge bays, Co2/GNR and Pt2/GNR were most stable with the adatoms stacked in a double-decker configuration above a single edge bay, and Fe2/GNR with the adatoms stacked at a single first-row hole site. Adatom adsorption involved strong hybridization between the metal d states and the GNR states, and adsorption at sites near a GNR edge generally reduced the average magnetic moment of carbon atoms at that edge to near zero, though in some cases—notably two Co2/GNR configurations—it led to the GNR edges having non-negligible magnetic moments of the same sign even though at the start of the optimization the metal atoms were nonmagnetic and the GNR edges had opposite signs (the preferred configuration of the pristine GNR). The electronic character of GNRs with adsorbed transition metal atoms or dimers depended on the species and concentration of the adsorbate and on the adsorption site(s), different stable or near-stable systems exhibiting semiconducting, zero-gap semiconducting, metallic, or half-metallic behavior.

  8. Differential Pair Distribution Function Study of the Structure of Arsenate Adsorbed on Nanocrystalline [gamma]-Alumina

    SciTech Connect

    Li, Wei; Harrington, Richard; Tang, Yuanzhi; Kubicki, James D.; Aryanpour, Masoud; Reeder, Richard J.; Parise, John B.; Phillips, Brian L.

    2012-03-15

    Structural information is important for understanding surface adsorption mechanisms of contaminants on metal (hydr)oxides. In this work, a novel technique was employed to study the interfacial structure of arsenate oxyanions adsorbed on {gamma}-alumina nanoparticles, namely, differential pair distribution function (d-PDF) analysis of synchrotron X-ray total scattering. The d-PDF is the difference of properly normalized PDFs obtained for samples with and without arsenate adsorbed, otherwise identically prepared. The real space pattern contains information on atomic pair correlations between adsorbed arsenate and the atoms on {gamma}-alumina surface (Al, O, etc.). PDF results on the arsenate adsorption sample on {gamma}-alumina prepared at 1 mM As concentration and pH 5 revealed two peaks at 1.66 {angstrom} and 3.09 {angstrom}, corresponding to As-O and As-Al atomic pair correlations. This observation is consistent with those measured by extended X-ray absorption fine structure (EXAFS) spectroscopy, which suggests a first shell of As-O at 1.69 {+-} 0.01 {angstrom} with a coordination number of 4 and a second shell of As-Al at 3.13 {+-} 0.04 {angstrom} with a coordination number of 2. These results are in agreement with a bidentate binuclear coordination environment to the octahedral Al of {gamma}-alumina as predicted by density functional theory (DFT) calculation.

  9. Effect of fly ash addition on the removal of hydrogen sulfide from biogas and air on sewage sludge-based composite adsorbents.

    PubMed

    Seredych, Mykola; Strydom, Christien; Bandosz, Teresa J

    2008-01-01

    Desulfurization adsorbents were prepared from the mixtures of various compositions of New York City sewage sludge and fly ashes from SASOL, South Africa, by pyrolysis at 950 degrees C. The resulting materials were used as adsorbents of hydrogen sulfide from simulated dry digester gas mixture or moist air. The adsorbents before and after H(2)S removal were characterized using adsorption of nitrogen, elemental analysis, pH measurements, XRF, XRD, and thermal analysis. It was found that the addition of fly ash decreases the desulfurization capacity in comparison with the sewage sludge-based materials. The extent of this decrease depends on the type of ash, its content and the composition of challenging gas. Although the presence of CO(2) deactivates some adsorption sites to various degrees depending on the sample composition, the addition of ashes has a more detrimental effect when the adsorbents are used to remove hydrogen sulfide from air. This is likely the result of hydrophobicity of ashes since the H(2)S removal capacity was found to be strongly dependent on the reactivity towards water/water adsorption. On the other hand, the addition of ashes strongly decreases the porosity of materials where sulfur, as a product of hydrogen sulfide oxidation, can be stored. PMID:17935967

  10. Second-harmonic generation in boron nitride nanotubes adsorbed with molecular hydrogen

    NASA Astrophysics Data System (ADS)

    Vazquez-Nava, Raul; Salazar-Aparicio, Ramses; Arzate, Norberto; Mendoza, Bernardo

    2014-03-01

    We present ab initio calculations for second harmonic response of single wall zigzag pristine and with molecular hydrogen adsorption boron nitride nanotubes. These calculations were performed with density functional theory within the local-density approximation (LDA) and the application of the GW approximation to calculate the band gap GW correction. A length-guage formalism for calculating the nonlinear optical response with the correct implementation of the scissor correction was used to obtain the nonlinear susceptibility χ (2)(- 2 ω ω , ω) of zigzag BN nanotubes. We found that contrary to that reported in the literature, the (5,0) and (9,0) boron nitride nannotubes have a non vanishing SHG response. We also found that SHG is not a suitable thecnique to monitor the physisorption of H2 molecules on the external surface of BN nanotubes. This work was partially supported by CONACYT-México, grants 153930.

  11. Molecular hydrogen adsorbed on benzene: Insights from a quantum Monte Carlo study.

    PubMed

    Beaudet, Todd D; Casula, Michele; Kim, Jeongnim; Sorella, Sandro; Martin, Richard M

    2008-10-28

    We present a quantum Monte Carlo study of the hydrogen-benzene system where binding is very weak. We demonstrate that the binding is well described at both variational Monte Carlo (VMC) and diffusion Monte Carlo (DMC) levels by a Jastrow correlated single determinant geminal wave function with an optimized compact basis set that includes diffuse orbitals. Agreement between VMC and fixed-node DMC binding energies is found to be within 0.18 mhartree, suggesting that the calculations are well converged with respect to the basis. Essentially the same binding is also found in independent DMC calculations using a different trial wave function of a more conventional Slater-Jastrow form, supporting our conclusion that the binding energy is accurate and includes all effects of correlation. We compare with previous calculations, and we discuss the physical mechanisms of the interaction, the role of diffuse basis functions, and the charge redistribution in the bond. PMID:19045302

  12. Platinum nanoparticle during electrochemical hydrogen evolution: Adsorbate distribution, active reaction species, and size effect

    SciTech Connect

    Tan, Teck L.; Wang, Lin -Lin; Zhang, Jia; Johnson, Duane D.; Bai, Kewu

    2015-03-02

    For small Pt nanoparticles (NPs), catalytic activity is, as observed, adversely affected by size in the 1–3 nm range. We elucidate, via first-principles-based thermodynamics, the operation H* distribution and cyclic voltammetry (CV) during the hydrogen evolution reaction (HER) across the electrochemical potential, including the underpotential region (U ≤ 0) that is difficult to assess in experiment. We consider multiple adsorption sites on a 1 nm Pt NP model and show that the characteristic CV peaks from different H* species correspond well to experiment. We next quantify the activity contribution from each H* species to explain the adverse effect of size. From the resolved CV peaks at the standard hydrogen electrode potential (U = 0), we first deduce that the active species for the HER are the partially covered (100)-facet bridge sites and the (111)-facet hollow sites. Upon evaluation of the reaction barriers at operation H* distribution and microkinetic modeling of the exchange current, we find that the nearest-neighbor (100)-facet bridge site pairs have the lowest activation energy and contribute to ~75% of the NP activity. Edge bridge sites (fully covered by H*) per se are not active; however, they react with neighboring (100)-facet H* to account for ~18% of the activity, whereas (111)-facet hollow sites contribute little. As a result, extrapolating the relative contributions to larger NPs in which the ratio of facet-to-edge sites increases, we show that the adverse size effect of Pt NP HER activity kicks in for sizes below 2 nm.

  13. Platinum nanoparticle during electrochemical hydrogen evolution: Adsorbate distribution, active reaction species, and size effect

    DOE PAGESBeta

    Tan, Teck L.; Wang, Lin -Lin; Zhang, Jia; Johnson, Duane D.; Bai, Kewu

    2015-03-02

    For small Pt nanoparticles (NPs), catalytic activity is, as observed, adversely affected by size in the 1–3 nm range. We elucidate, via first-principles-based thermodynamics, the operation H* distribution and cyclic voltammetry (CV) during the hydrogen evolution reaction (HER) across the electrochemical potential, including the underpotential region (U ≤ 0) that is difficult to assess in experiment. We consider multiple adsorption sites on a 1 nm Pt NP model and show that the characteristic CV peaks from different H* species correspond well to experiment. We next quantify the activity contribution from each H* species to explain the adverse effect of size.more » From the resolved CV peaks at the standard hydrogen electrode potential (U = 0), we first deduce that the active species for the HER are the partially covered (100)-facet bridge sites and the (111)-facet hollow sites. Upon evaluation of the reaction barriers at operation H* distribution and microkinetic modeling of the exchange current, we find that the nearest-neighbor (100)-facet bridge site pairs have the lowest activation energy and contribute to ~75% of the NP activity. Edge bridge sites (fully covered by H*) per se are not active; however, they react with neighboring (100)-facet H* to account for ~18% of the activity, whereas (111)-facet hollow sites contribute little. As a result, extrapolating the relative contributions to larger NPs in which the ratio of facet-to-edge sites increases, we show that the adverse size effect of Pt NP HER activity kicks in for sizes below 2 nm.« less

  14. Untangleing the effects of chain rigidity on the structure and dynamics of strongly adsorbed polymer melts

    SciTech Connect

    Carrillo, Jan-Michael Y.; Cheng, Shiwang; Kumar, Rajeev; Goswami, Monojoy; Sokolov, Alexei P; Sumpter, Bobby G.

    2015-06-11

    Here, we present a detailed analysis of coarse-grained molecular dynamics simulations of semiflexible polymer melts in contact with a strongly adsorbing substrate. We have characterized the segments in the interfacial layer by counting the number of trains, loops, tails and unadsorbed segments. For more rigid chains, a tail and an adsorbed segment (a train) dominate while loops are more prevalent in more flexible chains. The tails exhibit a non-uniformly stretched conformation akin to the polydispersed pseudobrush envisioned by Guiselin. To probe the dynamics of the segments we computed the layer z-resolved intermediate coherent collective dynamics structure factor, S(q, t, z), mean-square displacement of segments, and the 2nd Legendre polynomial of the time-autocorrelation of unit bond vectors, 2[ni(t,z)•ni(0,z)]>. Our results show that segmental dynamics is slower for stiffer chains and there is a strong correlation between the structure and dynamics in the interfacial layer. There is no glassy layer, and the slowing down in dynamics of stiffer chains in the adsorbed region can be attributed to the densification and the more persistent layering of segments.

  15. Untangleing the effects of chain rigidity on the structure and dynamics of strongly adsorbed polymer melts

    DOE PAGESBeta

    Carrillo, Jan-Michael Y.; Cheng, Shiwang; Kumar, Rajeev; Goswami, Monojoy; Sokolov, Alexei P; Sumpter, Bobby G.

    2015-06-11

    Here, we present a detailed analysis of coarse-grained molecular dynamics simulations of semiflexible polymer melts in contact with a strongly adsorbing substrate. We have characterized the segments in the interfacial layer by counting the number of trains, loops, tails and unadsorbed segments. For more rigid chains, a tail and an adsorbed segment (a train) dominate while loops are more prevalent in more flexible chains. The tails exhibit a non-uniformly stretched conformation akin to the polydispersed pseudobrush envisioned by Guiselin. To probe the dynamics of the segments we computed the layer z-resolved intermediate coherent collective dynamics structure factor, S(q, t, z),more » mean-square displacement of segments, and the 2nd Legendre polynomial of the time-autocorrelation of unit bond vectors, 2[ni(t,z)•ni(0,z)]>. Our results show that segmental dynamics is slower for stiffer chains and there is a strong correlation between the structure and dynamics in the interfacial layer. There is no glassy layer, and the slowing down in dynamics of stiffer chains in the adsorbed region can be attributed to the densification and the more persistent layering of segments.« less

  16. Changes in the quaternary structure of amelogenin when adsorbed onto surfaces

    SciTech Connect

    Tarasevich, Barbara J.; Lea, Alan S.; Bernt, William; Engelhard, Mark H.; Shaw, Wendy J.

    2009-02-02

    The amelogenin protein is involved in the formation of highly controlled and anisotropic hydroxyapatite crystals in tooth enamel. Amelogenin is unique in that it self assembles to form supramolecular quaternary structures called “nanospheres,” spherical aggregates of amelogenin monomers typically 20-60 nm in diameter. Although nanospheres have been observed in solution, the quaternary structure of amelogenin adsorbed onto surfaces is not well known. A better understanding of the surface structure is of great importance, however, because the function of amelogenin depends on it. We report studies of the adsorption of amelogenin onto self-assembled monolayers (SAMs) containing COOH and CH3 end group functionality as well as single crystal fluoroapatite (FAP), a biologically relevant surface. The supramolecular structures of the protein in solution as determined by dynamic light scattering (DLS) were compared with the supramolecular structures of the protein physisorbed onto surfaces as studied by atomic force microscopy (AFM). We found that although our solutions contained only nanospheres of narrow size distribution, smaller structures such as monomers and dimers were observed onto both hydrophilic and hydrophobic surfaces. This suggests that amelogenin can adsorb onto surfaces as small structures that peel away or “shed” from the nanospheres that are present in solution.

  17. Density-functional investigation of the geometric and electronic structure of ethylene oxide adsorbed on Si(100)

    NASA Astrophysics Data System (ADS)

    Wang, Lu; Li, Qing-Fang; Yang, Cui-Hong; Wei, Yue-Ling; Zhu, Xing-Feng; Rao, Wei-Feng

    2016-05-01

    The geometric and electronic structures of the ethylene oxide (EO) molecule adsorbed on Si(100)-(2 × 1) surface were investigated by using the density-functional theory calculations. All possible adsorbed structures were considered and it was found that only four adsorption structures are stable. The calculations of the formation energy revealed the most stable conformation and demonstrated that the nature of Si-O bond significantly affects the stability of adsorption systems. The analysis of corresponding electronic structures showed that two adsorbed structures are still semiconductor compounds but the other two are not. In particular, the EO after adsorbing was found to be connected via a ring-opening reaction where the molecule forms a five-membered ring together with the surface of dimer silicon atoms, and the produced five-membered ring is almost perpendicular to the silicon surface.

  18. Hydrogen passivation of silicon nanowire structures

    NASA Astrophysics Data System (ADS)

    Aouida, S.; Benabderrahmane Zaghouani, R.; Bachtouli, N.; Bessais, B.

    2016-05-01

    In this work, we focus on hydrogen passivation of silicon nanowire structures (SiNWs) obtained by metal assisted chemical etching (MACE) intended to be used in silicon-based solar cells. SiNWs present high surface defects density causing the minority carrier lifetime reduction. Our results show that hydrogen passivation of SiNWs ameliorates minority carrier lifetime by reducing the dangling bonds and then the surface recombination velocity. This enhancement is limited by SiNWs distribution.

  19. Synthesis of adsorbents with dendronic structures for protein hydrophobic interaction chromatography.

    PubMed

    Mata-Gómez, Marco A; Yaman, Sena; Valencia-Gallegos, Jesus A; Tari, Canan; Rito-Palomares, Marco; González-Valdez, José

    2016-04-22

    Here, we introduced a new technology based on the incorporation of dendrons-branched chemical structures-onto supports for synthesis of HIC adsorbents. In doing so we studied the synthesis and performance of these novel HIC dendron-based adsorbents. The adsorbents were synthesized in a facile two-step reaction. First, Sepharose 4FF (R) was chemically modified with polyester dendrons of different branching degrees i.e. third (G3) or fifth (G5) generations. Then, butyl-end valeric acid ligands were coupled to dendrons via ester bond formation. UV-vis spectrophotometry and FTIR analyses of the modified resins confirmed the presence of the dendrons and their ligands on them. Inclusion of dendrons allowed the increment of ligand density, 82.5 ± 11 and 175.6 ± 5.7 μmol ligand/mL resin for RG3 and RG5, respectively. Static adsorption capacity of modified resins was found to be ∼ 60 mg BSA/mL resin. Interestingly, dynamic binding capacity was higher at high flow rates, 62.5 ± 0.8 and 58.0 ± 0.5mg/mL for RG3 and RG5, respectively. RG3 was able to separate lipase, β-lactoglobulin and α-chymotrypsin selectively as well as fractionating of a whole proteome from yeast. This innovative technology will improve the existing HIC resin synthesis methods. It will also allow the reduction of the amount of adsorbent used in a chromatographic procedure and thus permit the use of smaller columns resulting in faster processes. Furthermore, this method could potentially be considered as a green technology since both, dendrons and ligands, are formed by ester bonds that are more biodegradable allowing the disposal of used resin waste in a more ecofriendly manner when compared to other exiting resins. PMID:27018188

  20. First principles DFT investigation of yttrium-decorated boron-nitride nanotube: Electronic structure and hydrogen storage

    NASA Astrophysics Data System (ADS)

    Jain, Richa Naja; Chakraborty, Brahmananda; Ramaniah, Lavanya M.

    2015-06-01

    The electronic structure and hydrogen storage capability of Yttrium-doped BNNTs has been theoretically investigated using first principles density functional theory (DFT). Yttrium atom prefers the hollow site in the center of the hexagonal ring with a binding energy of 0.8048eV. Decorating by Y makes the system half-metallic and magnetic with a magnetic moment of 1.0µB. Y decorated Boron-Nitride (8,0) nanotube can adsorb up to five hydrogen molecules whose average binding energy is computed as 0.5044eV. All the hydrogen molecules are adsorbed with an average desorption temperature of 644.708 K. Taking that the Y atoms can be placed only in alternate hexagons, the implied wt% comes out to be 5.31%, a relatively acceptable value for hydrogen storage materials. Thus, this system can serve as potential hydrogen storage medium.

  1. First principles DFT investigation of yttrium-decorated boron-nitride nanotube: Electronic structure and hydrogen storage

    SciTech Connect

    Jain, Richa Naja; Chakraborty, Brahmananda; Ramaniah, Lavanya M.

    2015-06-24

    The electronic structure and hydrogen storage capability of Yttrium-doped BNNTs has been theoretically investigated using first principles density functional theory (DFT). Yttrium atom prefers the hollow site in the center of the hexagonal ring with a binding energy of 0.8048eV. Decorating by Y makes the system half-metallic and magnetic with a magnetic moment of 1.0µ{sub B}. Y decorated Boron-Nitride (8,0) nanotube can adsorb up to five hydrogen molecules whose average binding energy is computed as 0.5044eV. All the hydrogen molecules are adsorbed with an average desorption temperature of 644.708 K. Taking that the Y atoms can be placed only in alternate hexagons, the implied wt% comes out to be 5.31%, a relatively acceptable value for hydrogen storage materials. Thus, this system can serve as potential hydrogen storage medium.

  2. First principles DFT investigation of yttrium-doped graphene: Electronic structure and hydrogen storage

    SciTech Connect

    Desnavi, Sameerah; Chakraborty, Brahmananda; Ramaniah, Lavanya M.

    2014-04-24

    The electronic structure and hydrogen storage capability of Yttrium-doped grapheme has been theoretically investigated using first principles density functional theory (DFT). Yttrium atom prefers the hollow site of the hexagonal ring with a binding energy of 1.40 eV. Doping by Y makes the system metallic and magnetic with a magnetic moment of 2.11 μ{sub B}. Y decorated graphene can adsorb up to four hydrogen molecules with an average binding energy of 0.415 eV. All the hydrogen atoms are physisorbed with an average desorption temperature of 530.44 K. The Y atoms can be placed only in alternate hexagons, which imply a wt% of 6.17, close to the DoE criterion for hydrogen storage materials. Thus, this system is potential hydrogen storage medium with 100% recycling capability.

  3. Adsorbed and near surface structure of ionic liquids at a solid interface.

    PubMed

    Segura, Juan José; Elbourne, Aaron; Wanless, Erica J; Warr, Gregory G; Voïtchovsky, Kislon; Atkin, Rob

    2013-03-01

    The structure of solid-ionic liquid (IL) interfaces has been characterised with unprecedented clarity by employing a range of atomic force microscopy (AFM) imaging techniques and tip pressures appropriate for the system under study. Soft contact and amplitude-modulation (AM) AFM imaging have been used to elucidate the lateral structure of ILs adsorbed onto mica, and in the near surface ion layers. Data is presented for ethylammonium nitrate (EAN) and 1-ethyl-3-methylimidazolium bis(trifluoro-methylsulfonyl)imide (EMIm TFSI). Whereas EAN is a protic IL that forms a nanostructured sponge phase in the bulk, EMIm TFSI is aprotic and has weak (or absent) bulk association structure. Comparison of results obtained for the two liquids elucidates how the strength of bulk liquid morphology effects lateral organisation at the surface, and any effect of IL class, i.e. protic versus aprotic. Imaging reveals EAN self assembles at the solid surface in a worm-like morphology, whereas EMIm cations adsorb in a more isolated fashion, but still in rows templated by the mica surface. To the authors' knowledge, the wormlike structures present at the EAN-mica interface are the smallest self-assembled aggregates ever imaged on a solid surface. PMID:23361257

  4. Neutron Reflectometry Studies of the Adsorbed Structure of the Amelogenin, LRAP

    SciTech Connect

    Tarasevich, Barbara J.; Perez-Salas, Ursula; Masica, David L.; Philo, John; Krueger, Susan; Majkrzak, Charles F.; Gray, Jeffrey J.; Shaw, Wendy J.

    2013-03-21

    Amelogenins make up over 90 percent of the protein present during enamel formation and have been demonstrated to be critical in proper enamel development, but the mechanism governing this control is not well understood. Leucine-rich amelogenin peptide (LRAP) is a 59-residue splice variant of amelogenin and contains the charged regions from the full protein thought to control crystal regulation. In this work, we utilized neutron reflectivity (NR) to investigate the structure and orientation of LRAP adsorbed from solutions onto molecularly smooth COOH-terminated self-assembled monolayers (SAMs) surfaces. Sedimentation velocity experiments revealed that LRAP is primarily a monomer in saturated calcium phosphate (SCP) solutions (0.15 M NaCl) at pH 7.4. LRAP adsorbed as ~33 Å thick layers at ~70% coverage as determined by NR. Rosetta simulations of the dimensions of LRAP in solution (37 Å diameter) indicate that the NR determined z dimension is consistent with an LRAP monomer. Sedimentation velocity experiments and Rosetta simulation show that the LRAP monomer has an extended, asymmetric shape in solution. The NR data suggests that the protein is not completely extended on the surface, having some degree of structure away from the surface. A protein orientation with the C-terminal and inner N-terminal region (~8-24)) located near the surface is consistent with the higher scattering length density (SLD) and higher protein hydration found near the surface by NR. This work presents new information on the tertiary and quaternary structure of LRAP in solution and adsorbed onto surfaces. It also presents further evidence that the monomeric species may be an important functional form of amelogenin proteins.

  5. Neutron Reflectometry Studies of the Adsorbed Structure of the Amelogenin, LRAP

    PubMed Central

    Tarasevich, Barbara J.; Perez-Salas, Ursula; Masica, David L.; Philo, John; Kienzle, Paul; Krueger, Susan; Majkrzak, Charles F.; Gray, Jeffrey L.; Shaw, Wendy J.

    2013-01-01

    Amelogenins make up over 90 percent of the protein present during enamel formation and have been demonstrated to be critical in proper enamel development, but the mechanism governing this control is not well understood. Leucine-rich amelogenin peptide (LRAP) is a 59-residue splice variant of amelogenin and contains the charged regions from the full protein thought to control crystal regulation. In this work, we utilized neutron reflectivity (NR) to investigate the structure and orientation of LRAP adsorbed from solutions onto molecularly smooth COOH-terminated self-assembled monolayers (SAMs) surfaces. Sedimentation velocity (SV) experiments revealed that LRAP is primarily a monomer in saturated calcium phosphate (SCP) solutions (0.15 M NaCl) at pH 7.4. LRAP adsorbed as ~32 Å thick layers at ~70% coverage as determined by NR. Rosetta simulations of the dimensions of LRAP in solution (37 Å diameter) indicate that the NR determined z dimension is consistent with an LRAP monomer. SV experiments and Rosetta simulation show that the LRAP monomer has an extended, asymmetric shape in solution. The NR data suggests that the protein is not completely extended on the surface, having some degree of structure away from the surface. A protein orientation with the C-terminal and inner N-terminal region (residues ~8–24) located near the surface is consistent with the higher scattering length density (SLD) found near the surface by NR. This work presents new information on the tertiary and quaternary structure of LRAP in solution and adsorbed onto surfaces. It also presents further evidence that the monomeric species may be an important functional form of amelogenin proteins. PMID:23477285

  6. LEED structure analysis of Sb adsorbed Si(0 0 1) surface

    NASA Astrophysics Data System (ADS)

    Mitsui, T.; Hongo, S.; Urano, T.

    2001-06-01

    Sb adsorbed Si(0 0 1) surfaces have been investigated by LEED and AES. After a few monolayer (ML) deposition at room temperature, the LEED patterns of 1×1, 2×1 and c(4×4) have been observed successively as elevating the annealing temperature. Two structures (1×1 and 2×1) were examined by LEED I- V curve analysis. The genetic algorithm (GA) was operated to search a global optimum structure. For the 1×1 structure, a good R-factor value of 0.22 was obtained for the model in which topmost 1 ML Sb atoms sit on the Si atoms of fourth substrate layer. For the 2×1 structure, two cases of 1 ML and a half ML Sb coverage was examined, and an Sb dimer model with 1 ML coverage gave a better R-factor value.

  7. Hydrogen-hydrogen intermolecular structure of polyethylene in the melt

    NASA Astrophysics Data System (ADS)

    Londono, J. D.; Annis, B. K.; Habenschuss, A.; Smith, G. D.; Borodin, O.; Tso, C.; Hsieh, E. T.; Soper, A. K.

    1999-05-01

    Three polyethylene samples, which differed in their degree of deuteration, were studied in neutron diffraction isotopic substitution (NDIS) experiments at 428 K. These results were complemented at small wavevectors by small angle neutron measurements. The intermolecular hydrogen-hydrogen (HH) structure function, hHH(Q), was obtained without recourse to intramolecular structure models, as demonstrated in a prior report. The PE experimental results are compared to computer simulation results for the alkanes C100 at 509 K and C44 at 350, 400, and 450 K. The small temperature dependence of the HH intermolecular radial distribution functions, gHH(r) for C44 indicates that the differences observed between the PE, C100, and C44 (450 K) results are, for the most part, not due to just temperature differences. It is shown that the string model, an analytic result from an integral equation theory of polymers (PRISM), can account approximately for the overall shape of the gHH(r) functions, and that this overall shape is dependent on the radius of gyration of the molecule. Further analysis shows that there are two other contributions to gHH(r), both of which are independent of chain length to first order. The first is due to chain-chain packing, and the second is due to local HH intermolecular correlations. These results are significant because they demonstrate that hHH(Q) is a useful function for studying intermolecular polymer structure, which has been shown to underpin phase behavior in polyolefin blends.

  8. Structure and Reactivity of Alkyl Ethers Adsorbed on CeO(2)(111) Model Catalysts

    SciTech Connect

    Calaza, Florencia C; Chen, Tsung-Liang; Mullins, David R; Overbury, Steven {Steve} H

    2011-01-01

    The effect of surface hydroxyls on the adsorption of ether on ceria was explored. Adsorption of dimethyl ether (DME) and diethyl ether (DEE) on oxidized and reduced CeO{sub 2}(111) films was studied and compared with Ru(0001) using RAIRS and sXPS within a UHV environment. On Ru(0001) the ethers adsorb weakly with the molecular plane close to parallel to the surface plane. On the ceria films, the adsorption of the ethers was stronger than on the metal surface, presumably due to stronger interaction of the ether oxygen lone pair electrons with a cerium cation. This interaction causes the ethers to tilt away from the surface plane compared to the Ru(0001) surface. No pronounced differences were found between oxidized (CeO{sub 2}) and reduced (CeOx) films. The adsorption of the ethers was found to be perturbed by the presence of OH groups on hydroxylated CeOx. In the case of DEE, the geometry of adsorption resembles that found on Ru, and in the case of dimethyl ether DME is in between that one found on clean CeOx and the metal surface. Decomposition of the DEE was observed on the OH/CeOx surface following high DEE exposure at 300 K and higher temperatures. Ethoxides and acetates were identified as adsorbed species on the surface by means of RAIRS and ethoxides and formates by s-XPS. No decomposition of dimethyl ether was observed on the OH/CeOx at these higher temperatures, implying that the dissociation of the C-O bond from ethers requires the presence of {beta}-hydrogen.

  9. Structure and Reactivity of Alkyl Ethers Adsorbed on CeO2(111) Model Catalysts

    SciTech Connect

    F Calaza; T Chen; D Mullins; S Overbury

    2011-12-31

    The effect of surface hydroxyls on the adsorption of ether on ceria was explored. Adsorption of dimethyl ether (DME) and diethyl ether (DEE) on oxidized and reduced CeO{sub 2}(111) films was studied and compared with Ru(0001) using RAIRS and sXPS within a UHV environment. On Ru(0001) the ethers adsorb weakly with the molecular plane close to parallel to the surface plane. On the ceria films, the adsorption of the ethers was stronger than on the metal surface, presumably due to stronger interaction of the ether oxygen lone pair electrons with a cerium cation. This interaction causes the ethers to tilt away from the surface plane compared to the Ru(0001) surface. No pronounced differences were found between oxidized (CeO{sub 2}) and reduced (CeOx) films. The adsorption of the ethers was found to be perturbed by the presence of OH groups on hydroxylated CeOx. In the case of DEE, the geometry of adsorption resembles that found on Ru, and in the case of dimethyl ether DME is in between that one found on clean CeOx and the metal surface. Decomposition of the DEE was observed on the OH/CeOx surface following high DEE exposure at 300 K and higher temperatures. Ethoxides and acetates were identified as adsorbed species on the surface by means of RAIRS and ethoxides and formates by s-XPS. No decomposition of dimethyl ether was observed on the OH/CeOx at these higher temperatures, implying that the dissociation of the C-O bond from ethers requires the presence of {beta}-hydrogen.

  10. Temperature-induced ordering of metal/adsorbate structures at electrochemical interfaces.

    SciTech Connect

    Lucas, C. A.; Thompson, P.; Cormack, M.; Brownrigg, A.; Fowler, B.; Strmcnik, D.; Stamenkovic, V.; Greeley, J.; Menzel, A.; You, H.; Markovic, N. M.; Univ. Liverpool; Paul Scherrer Inst.

    2009-01-01

    The influence of temperature changes in water-based electrolytes on the atomic structure at the electrochemical interface has been studied using in situ surface X-ray scattering (SXS) in combination with cyclic voltammetry. Results are presented for the potential-dependent surface reconstruction of Au(100), the adsorption and ordering of bromide anions on the Au(100) surface, and the adsorption and oxidation of CO on Pt(111) in pure HClO{sub 4} and in the presence of anions. These systems represent a range of structural phenomena, namely metal surface restructuring and ordering transitions in both nonreactive spectator species and reactive adsorbate layers. The key effect of temperature appears to be in controlling the kinetics of the surface reactions that involve oxygenated species, such as hydroxyl adsorption and oxide formation. The results indicate that temperature effects should be considered in the determination of structure-function relationships in many important electrochemical systems.

  11. Temperature-induced ordering of metal/adsorbate structures at electrochemical interfaces.

    PubMed

    Lucas, Christopher A; Thompson, Paul; Cormack, Michael; Brownrigg, Alexander; Fowler, Ben; Strmcnik, Dusan; Stamenkovic, Vojislav; Greeley, Jeff; Menzel, Andreas; You, Hoydoo; Marković, Nenad M

    2009-06-10

    The influence of temperature changes in water-based electrolytes on the atomic structure at the electrochemical interface has been studied using in situ surface X-ray scattering (SXS) in combination with cyclic voltammetry. Results are presented for the potential-dependent surface reconstruction of Au(100), the adsorption and ordering of bromide anions on the Au(100) surface, and the adsorption and oxidation of CO on Pt(111) in pure HClO(4) and in the presence of anions. These systems represent a range of structural phenomena, namely metal surface restructuring and ordering transitions in both nonreactive spectator species and reactive adsorbate layers. The key effect of temperature appears to be in controlling the kinetics of the surface reactions that involve oxygenated species, such as hydroxyl adsorption and oxide formation. The results indicate that temperature effects should be considered in the determination of structure-function relationships in many important electrochemical systems. PMID:19489644

  12. Path integral Monte Carlo simulations of H2 adsorbed to lithium-doped benzene: A model for hydrogen storage materials.

    PubMed

    Lindoy, Lachlan P; Kolmann, Stephen J; D'Arcy, Jordan H; Crittenden, Deborah L; Jordan, Meredith J T

    2015-11-21

    Finite temperature quantum and anharmonic effects are studied in H2-Li(+)-benzene, a model hydrogen storage material, using path integral Monte Carlo (PIMC) simulations on an interpolated potential energy surface refined over the eight intermolecular degrees of freedom based upon M05-2X/6-311+G(2df,p) density functional theory calculations. Rigid-body PIMC simulations are performed at temperatures ranging from 77 K to 150 K, producing both quantum and classical probability density histograms describing the adsorbed H2. Quantum effects broaden the histograms with respect to their classical analogues and increase the expectation values of the radial and angular polar coordinates describing the location of the center-of-mass of the H2 molecule. The rigid-body PIMC simulations also provide estimates of the change in internal energy, ΔUads, and enthalpy, ΔHads, for H2 adsorption onto Li(+)-benzene, as a function of temperature. These estimates indicate that quantum effects are important even at room temperature and classical results should be interpreted with caution. Our results also show that anharmonicity is more important in the calculation of U and H than coupling-coupling between the intermolecular degrees of freedom becomes less important as temperature increases whereas anharmonicity becomes more important. The most anharmonic motions in H2-Li(+)-benzene are the "helicopter" and "ferris wheel" H2 rotations. Treating these motions as one-dimensional free and hindered rotors, respectively, provides simple corrections to standard harmonic oscillator, rigid rotor thermochemical expressions for internal energy and enthalpy that encapsulate the majority of the anharmonicity. At 150 K, our best rigid-body PIMC estimates for ΔUads and ΔHads are -13.3 ± 0.1 and -14.5 ± 0.1 kJ mol(-1), respectively. PMID:26590532

  13. Novel Hydrogen Hydrate Structures under Pressure

    NASA Astrophysics Data System (ADS)

    Qian, Guang-Rui; Lyakhov, Andriy O.; Zhu, Qiang; Oganov, Artem R.; Dong, Xiao

    2014-07-01

    Gas hydrates are systems of prime importance. In particular, hydrogen hydrates are potential materials of icy satellites and comets, and may be used for hydrogen storage. We explore the H2O-H2 system at pressures in the range 0-100 GPa with ab initio variable-composition evolutionary simulations. According to our calculation and previous experiments, the H2O-H2 system undergoes a series of transformations with pressure, and adopts the known open-network clathrate structures (sII, C0), dense ``filled ice'' structures (C1, C2) and two novel hydrate phases. One of these is based on the hexagonal ice framework and has the same H2O:H2 ratio (2:1) as the C0 phase at low pressures and similar enthalpy (we name this phase Ih-C0). The other newly predicted hydrate phase has a 1:2 H2O:H2 ratio and structure based on cubic ice. This phase (which we name C3) is predicted to be thermodynamically stable above 38 GPa when including van der Waals interactions and zero-point vibrational energy, and explains previously mysterious experimental X-ray diffraction and Raman measurements. This is the hydrogen-richest hydrate and this phase has a remarkable gravimetric density (18 wt.%) of easily extractable hydrogen.

  14. Novel hydrogen hydrate structures under pressure.

    PubMed

    Qian, Guang-Rui; Lyakhov, Andriy O; Zhu, Qiang; Oganov, Artem R; Dong, Xiao

    2014-01-01

    Gas hydrates are systems of prime importance. In particular, hydrogen hydrates are potential materials of icy satellites and comets, and may be used for hydrogen storage. We explore the H₂O-H₂ system at pressures in the range 0-100 GPa with ab initio variable-composition evolutionary simulations. According to our calculation and previous experiments, the H₂O-H₂ system undergoes a series of transformations with pressure, and adopts the known open-network clathrate structures (sII, C₀), dense "filled ice" structures (C₁, C₂) and two novel hydrate phases. One of these is based on the hexagonal ice framework and has the same H₂O:H₂ ratio (2:1) as the C₀ phase at low pressures and similar enthalpy (we name this phase Ih-C₀). The other newly predicted hydrate phase has a 1:2 H₂O:H₂ ratio and structure based on cubic ice. This phase (which we name C₃) is predicted to be thermodynamically stable above 38 GPa when including van der Waals interactions and zero-point vibrational energy, and explains previously mysterious experimental X-ray diffraction and Raman measurements. This is the hydrogen-richest hydrate and this phase has a remarkable gravimetric density (18 wt.%) of easily extractable hydrogen. PMID:25001502

  15. Edge states and local electronic structure around an adsorbed impurity in a topological superconductor

    NASA Astrophysics Data System (ADS)

    Tai, Yuan-Yen; Choi, Hongchul; Ahmed, Towfiq; Ting, C. S.; Zhu, Jian-Xin

    2015-11-01

    Recently, topological superconducting states have attracted much interest. In this paper, we consider a topological superconductor with Z2 topological mirror order [Y.-Y. Tai et al., Phys. Rev. B 91, 041111(R) (2015), 10.1103/PhysRevB.91.041111] and s±-wave superconducting pairing symmetry, within a two-orbital model originally designed for iron-based superconductivity [Y.-Y. Tai et al., Europhys. Lett. 103, 67001 (2013), 10.1209/0295-5075/103/67001]. We predict the existence of gapless edge states. We also study the local electronic structure around an adsorbed interstitial magnetic impurity in the system, and find the existence of low-energy in-gap bound states even with a weak spin polarization on the impurity. We also discuss the relevance of our results to a recent scanning tunneling microscopy experiment on a Fe(Te,Se) compound with an adsorbed Fe impurity [J.-X. Yin et al., Nat. Phys. 11, 543 (2015), 10.1038/nphys3371], for which our density functional calculations show the Fe impurity is spin polarized.

  16. Influence of structural fluctuations on lifetimes of adsorbate states at hybrid organic-semiconductor interfaces

    NASA Astrophysics Data System (ADS)

    Müller, M.; Sánchez-Portal, D.; Lin, H.; Fratesi, G.; Brivio, G. P.; Selloni, A.

    On the road towards a more realistic description of charge transfer processes at hybrid organic-semiconductor interfaces for photovoltaic applications we extend our first-principles scheme for the extraction of elastic linewidths to include the effects of structural fluctuations. Based on snapshots obtained from Car-Parinello molecular dynamics simulations at room temperature, we set up geometries in which dye molecules at interfaces are attached to a semi-infinite TiO2 substrate. The elastic linewidths are computed using a Green's function method. This effectively introduces the coupling to a continuum of states in the substrate. In particular we investigate catechol and isonicotinic acid on rutile(110) and anatase(101) at the level of semi-local density functional theory. We perform multiple calculations of linewidths and peak-positions associated with the adsorbate's frontier orbitals for different geometric configurations to obtain a time-averaged analysis of such physical properties. We compare the results from the considered systems to understand the effects of dynamics onto interfacial charge transfer and systematically assess the dependence of the extracted elastic lifetimes on the relative alignment between adsorbate and substrate states. This project has received funding from the European Union Seventh Framework Programme under Grant Agreement No. 607323 [THINFACE].

  17. X-ray standing wave investigation of the surface structure of selenite anions adsorbed on calcite.

    SciTech Connect

    Cheng, L.; Lyman, P. F.; Sturchio, N. C.; Bedzyk, M. J.; Northwestern Univ.

    1997-01-01

    The adsorption of selenite ions (SeO{sup 2-}{sub 3}) from a dilute aqueous solution onto a freshly-cleaved calcite (10 {ovr 1} 4) surface was studied with the X-ray standing wave (XSW) technique. The complex ion SeO{sup 2-}{sub 3} is found to selectively adsorb at the CO{sup 2-}{sub 3} site via ionic exchange, forming a two-dimensional solid-solution of the form Ca(SeO{sub 3}){sub x}(CO{sub 3}){sub 1-x} at the interface. The calcite (10 {ovr 1} 4), (0006) and (11 {ovr 2} 0) Bragg reflections were used to triangulate the Se position with respect to the calcite lattice. The local surface structure at the SeO{sup 2-}{sub 3} adsorbate site, derived from the XSW results, is consistent with a model in which the base of the SeO{sup 2-}{sub 3} trigonal pyramid aligns with (and replaces) the CO{sup 2-}{sub 3} equilateral triangular group. The SeO{sup 2-}{sub 3} adsorption saturated at a coverage of 0.02 monolayers. Under identical chemical conditions, selenate (SeO{sup 2-}{sub 4}) adsorption was inhibited.

  18. Pre-adsorbed type-I collagen structure-dependent changes in osteoblastic phenotype

    SciTech Connect

    Hanagata, Nobutaka . E-mail: HANAGATA.Nobutaka@nims.go.jp; Takemura, Taro; Monkawa, Akira; Ikoma, Toshiyuki; Tanaka, Junzo

    2006-06-16

    Type-I collagen is the most abundant extracellular matrix in bones and modulates various functions of osteoblasts. We prepared two different structures of type-I collagen on tissue culture grade polystylene (TCPS) surfaces, one is feltwork structure of filamentous molecules from acid solutions (ACs) and the other is network structure of fibrils from neutral solutions (NCs), to examine effects of the structures on the maturation process of osteoblast-like cells. No significant differences of cell proliferation were observed between TCPS and ACs, but NCs delayed the proliferation. In initial cell attachment, the cells on ACs had tense lamellipodia with sharp tips, while those on NCs had loose lamellipodia. No detectable differences in levels of expressed integrin {alpha}{sub 2}- and {alpha}{sub 5}-subunits were observed between the structures. Although the matrix mineralization in NCs was also delayed in comparison with TCPS and ACs, fully mineralized levels in NCs were the same as those of TCPS and ACs. In addition, although we examined the effects of densities of pre-adsorbed collagen molecules on osteoblast maturation, the effects were less serious than those of the structures. This study suggests that the structures of collagen affect proliferation and mineralization of osteoblast-like cells.

  19. Potential structural material problems in a hydrogen energy system

    NASA Technical Reports Server (NTRS)

    Gray, H. R.; Nelson, H. G.; Johnson, R. E.; Mcpherson, W. B.; Howard, F. S.; Swisher, J. H.

    1976-01-01

    Potential structural material problems that may be encountered in the three components of a hydrogen energy system - production, transmission/storage, and utilization - have been identified. Hydrogen embrittlement, corrosion, oxidation, and erosion may occur during the production of hydrogen. Hydrogen embrittlement is of major concern during both transmission and utilization of hydrogen. Specific materials research and development programs necessary to support a hydrogen energy system are described. An awareness of probable shortages of strategic materials has been maintained in these suggested programs.

  20. Potential structural material problems in a hydrogen energy system

    NASA Technical Reports Server (NTRS)

    Gray, H. R.; Nelson, H. G.; Johnson, R. E.; Mcpherson, B.; Howard, F. S.; Swisher, J. H.

    1975-01-01

    Potential structural material problems that may be encountered in the three components of a hydrogen energy system - production, transmission/storage, and utilization - were identified. Hydrogen embrittlement, corrosion, oxidation, and erosion may occur during the production of hydrogen. Hydrogen embrittlement is of major concern during both transmission and utilization of hydrogen. Specific materials research and development programs necessary to support a hydrogen energy system are described.

  1. Coordination structure of adsorbed Zn(II) at Water-TiO2 interfaces

    SciTech Connect

    He, G.; Pan, G.; Zhang, M.; Waychunas, G.A.

    2011-01-15

    The local structure of aqueous metal ions on solid surfaces is central to understanding many chemical and biological processes in soil and aquatic environments. Here, the local coordination structure of hydrated Zn(II) at water-TiO{sub 2} interfaces was identified by extended X-ray absorption fine structure (EXAFS) and X-ray absorption near-edge structure (XANES) spectroscopy combined with density functional theory (DFT) calculations. A nonintegral coordination number of average {approx}4.5 O atoms around a central Zn atom was obtained by EXAFS analysis. DFT calculations indicated that this coordination structure was consistent with the mixture of 4-coordinated bidentate binuclear (BB) and 5-coordinated bidentate mononuclear (BM) metastable equilibrium adsorption (MEA) states. The BB complex has 4-coordinated Zn, while the monodentate mononuclear (MM) complex has 6-coordinated Zn, and a 5-coordinated adsorbed Zn was found in the BM adsorption mode. DFT calculated energies showed that the lower-coordinated BB and BM modes were thermodynamically more favorable than the higher-coordinated MM MEA state. The experimentally observed XANES fingerprinting provided additional direct spectral evidence of 4- and 5-coordinated Zn-O modes. The overall spectral and computational evidence indicated that Zn(II) can occur in 4-, 5-, and 6-oxygen coordinated sites in different MEA states due to steric hindrance effects, and the coexistence of different MEA states formed the multiple coordination environments.

  2. Structure and composition of clean and hydrogen covered MoRe surfaces

    NASA Astrophysics Data System (ADS)

    Hammer, L.; Meyer, S.; Rath, C.

    1995-04-01

    The clean and hydrogen covered (100) and (110) faces of Mo(0.75)Re(0.23) alloy single crystals show 1x1 structures. By means of LEED structure analyses we have determined the interlayer distances as well as the layer concentrations down to the sixth layer. While the clean (110) surface turns out to be nearly bulklike terminated, the clean (100) face is found to exhibit both an extended oscillatory layer relaxation and composition profile. Hydrogen adsorption at low temperatures does not alter the composition profile and removes the small remaining relaxation for the (110) surface. In case of the (100) face a substantial reduction of the relaxation is observed for the outermost layer distances as well, while deeper layer relaxations are preserved indicating a strong coupling off relaxation and composition profiles. Hydrogen is found to adsorb in quasi-threefold coordinated sites for the (110) and bridge sites for the (100) face.

  3. Redetermination of piperidinium hydrogen sulfide structure

    NASA Technical Reports Server (NTRS)

    Andras, Maria T.; Hepp, Aloysius F.; Fanwick, Phillip E.; Duraj, Stan A.; Gordon, Edward M.

    1994-01-01

    The presence of adventitious water in a reaction between dicyclopentamethylene thiuram-disulfide (C5H10NCS2)(sub 2) and a picoline solution of tricyclopentadienyl indium(III) (C5H5)(sub 3). It resulted in the formation of piperidinium hydrogen sulfide (C5H13NS). The piperidinium hydrogen sulfide produced in this way was unambiguously characterized by X-ray crystallography. The structure determination showed that the piperidinium hydrogen sulfide crystal (MW = 119.23 g/mol) has an orthorhombic (Pbcm) unit cell whose parameters are: a = 9.818(2), b = 7.3720(1), c = 9.754(1) A, V = 706.0(3) A(exp 3), Z=4. D(sub chi) = 1.122 g cm(exp -3), Mo K(alpha) (lamda = 0.71073), mu= 3.36 cm(exp -1), F(000) = 264.0, T =293 K, R = 0.036 for 343 reflections with F(sub O)(sup 2) greater than 3 sigma (F(sub O)(sup 2)) and 65 variables. The compound consists of (C5H10NH2)(+) cations and (SH)(-) anions with both species residing on crystallographic mirror planes. N-H -- S hydrogen bonding contributes to the interconnection of neighboring piperidinium components of the compound.

  4. LEED crystallography studies of the structure of clean and adsorbate-covered Ir, Pt and Rh crystal surfaces

    SciTech Connect

    Koestner, R.J.

    1982-08-01

    There have only been a few Low Energy Electron Diffraction (LEED) intensity analyses carried out to determine the structure of molecules adsorbed on metal surfaces; most surface crystallography studies concentrated on the structure of clean unreconstructed or atomic adsorbate-covered transition metal faces. The few molecular adsorption systems already investigated by dynamical LEED are CO on Ni(100), Cu(100) and Pd(100) as well as C/sub 2/H/sub 2/ and C/sub 2/H/sub 4/ adsorbed on Pt(111). The emphasis of this thesis research has been to extend the applicability of LEED crystallography to the more complicated unit cells found in molecular overlayers on transition metals or in there constructed surfaces of clean transition metals.

  5. Impact of temperature and electrical potentials on the stability and structure of collagen adsorbed on the gold electrode

    NASA Astrophysics Data System (ADS)

    Meiners, Frank; Ahlers, Michael; Brand, Izabella; Wittstock, Gunther

    2015-01-01

    The morphology and structure of collagen type I adsorbed on gold electrodes were studied as a function of electrode potential and temperature by means of capacitance measurements, polarization modulation infrared reflection-absorption spectroscopy and scanning force microscopy at temperatures of 37 °C, 43 °C and 50 °C. The selected temperatures corresponded to the normal body temperature, temperature of denaturation of collagen molecules and denaturation of collagen fibrils, respectively. Independently of the solution temperature, collagen was adsorbed on gold electrodes in the potential range - 0.7 V < E < 0.4 V vs. Ag/AgCl, where the protein film was very stable. Fragments of collagen molecules made a direct contact to the gold surface and water was present in the film. Protein molecules were oriented preferentially with their long axis towards the gold surface. Collagen molecules in the adsorbed state preserved their native triple helical structure even at temperatures corresponding to collagen denaturation in aqueous solutions. Application of E < - 0.75 V vs. Ag/AgCl leads to the swelling of the protein film by water and desorption from the electrode surface. IR spectra provided no evidence of the thermal denaturation of adsorbed collagen molecules. A temperature increase to 50 °C leads to a distortion of the collagen film. The processes of aggregation and fibrilization were preferred over thermal denaturation for collagen adsorbed on the electrode surface and exposed to changing potentials.

  6. Separation of the attractive and repulsive contributions to the adsorbate-adsorbate interactions of polar adsorbates on Si(100)

    NASA Astrophysics Data System (ADS)

    Lin, Ying-Hsiu; Jeng, Horng-Tay; Lin, Deng-Sung

    2015-11-01

    Dissociative adsorption of H2O, NH3, CH3OH and CH3NH2 polar molecules on the Si(100) surface results in a 1:1 mixture of two adsorbates (H and multi-atomic fragment A = OH, NH2, CH3O, CH3NH, respectively) on the surface. By using density functional theory (DFT) calculations, the adsorption geometry, the total energies and the charge densities for various possible ordered structures of the mixed adsorbate layer have been found. Analyzing the systematic trends in the total energies unveils concurrently the nearest-neighbor interactions ENN and the next nearest-neighbor interactions ENNN between two polar adsorbates A. In going from small to large polar adsorbates, ENN's exhibit an attractive-to-repulsive crossover behavior, indicating that they include competing attractive and repulsive contributions. Exploration of the charge density distributions allows the estimation of the degree of charge overlapping between immediately neighboring A's, the resulting contribution of the steric repulsions, and that of the attractive interactions to the corresponding ENN's. The attractive contributions to nearest neighboring adsorbate-adsorbate interactions between the polar adsorbates under study are shown to result from hydrogen bonds or dipole-dipole interactions.

  7. Electrochemical reduction of oxygen and hydrogen peroxide catalyzed by a surface copper(II)-2,4,6-tris(2-piridil)-1,3,5-triazine complex adsorbed on a graphite electrode

    NASA Astrophysics Data System (ADS)

    Dias, Vera L. N.; Fernandes, Elizabeth N.; da Silva, Leila M. S.; Marques, Edmar P.; Zhang, Jiujun; Marques, Aldaléa L. Brandes

    A graphite electrode irreversibly adsorbed by 2,4,6-tris(2-piridil)-1,3,5-triazine (abbreviated as TPT) was examined by cyclic voltammetry. The adsorbed TPT exhibited two irreversible reduction waves in the potential range of -0.7 and -1.0 V (versus SCE). Upon strong adsorption, TPT can serve as a coordination ligand for copper ions to form a surface complex. Its three adjacent nitrogen positions provide strong affinity to the metal ions and bond copper(II) to an electrode surface. A 1:1 coordination between Cu(II) or Cu(I) and the TPT ligand to form [Cu(II)(TPT)] 2+ or [Cu(I)(TPT)] + is the predominant process, evidenced by spectrophotometry, surface cyclic voltammetry, and coordinated structural feasibility of Cu(II)/Cu(I)-TPT complexes. The predominant copper(II)-TPT surface complex shows a reversible redox wave, which is identified as one-electron process of [Cu(II)(TPT)] 2+ ↔ [Cu(I)(TPT)] +. The electrode adsorbed by [Cu(II)(TPT)] 2+ complex showed electrocatalytic activity towards oxygen and/or hydrogen peroxide reductions. The catalyzed reduction of oxygen and hydrogen peroxide were identified as four-electron and two-electron process to form water. It is suggested that the possible electrocatalytic reductions were due to an inner-sphere mechanism, which involved a coordination between substrate (O 2 or H 2O 2) and [Cu(I)(TPT)] +. The reduction kinetics were also investigated by a rotating disk electrode method.

  8. Analysis of structure and orientation of adsorbed polymers in solution subject to a dynamic shear stress

    SciTech Connect

    Smith, G.; Baker, S.; Toprakcioglu, C.

    1996-09-01

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). Polymer-based separation techniques rely on the ability of a binding portion of the polymer to interact with a specific molecule in a solution flowing past the polymer. The location of the binding site within or out of the entangled polymer chains is thus crucial to the effectiveness of these methods. For this reason, the details of flow induced deformation of the polymer chains is important in such applications as exclusion chromatography, waste water treatment, ultrafiltration, enhanced oil recovery and microbial adhesion. Few techniques exist to examine the structure and orientation of polymeric materials, and even fewer to examine systems in a dynamic fluid flow. The goal of this project was to understand the molecular structure and orientation of adsorbed polymers with and without active binding ligands as a function of solvent shear rate, solvent power, polymer molecular weight, surface polymer coverage and heterogeneity of the surface polymer chains by neutron reflectometry in a newly designed shear cell. Geometrical effects on binding of molecules in the flow was also studied subject to the same parameters.

  9. Di- and triethanolamine grafted kaolinites of different structural order as adsorbents of heavy metals.

    PubMed

    Koteja, Anna; Matusik, Jakub

    2015-10-01

    Efficient sorbents based on widely available clay minerals are of particular value in the field of pollution control. The research shows mineral-based sorbents formed through organic modification of two kaolinites differing in structural order. Their structure and texture was characterized by XRD, FTIR, DTA/TG, CHN, XPS and N2 adsorption/desorption methods. The obtained materials were tested as adsorbents of Cd(II), Zn(II), Pb(II) and Cu(II) in equilibrium and kinetic experiments. Moreover, the sorption mechanisms were subjected to investigation. The synthesis procedure involved interlayer grafting of kaolinites with diethanolamine (DEA) and triethanolamine (TEA). The organo-kaolinites showed resistance to hydrolysis and temperature up to ∼300 °C. The adsorption improvement was observed for the modified materials, particular the DEA derivatives and materials based on the poorly ordered kaolinite. The XPS analyses of elements local environment coupled with binding strength tests enabled to confirm the immobilization mechanisms. The pure kaolinites removed metal ions through either the ion-exchange or the surface complexation, exclusively on the external surfaces. In turn, the grafted materials additionally immobilized ions in the interlayer space which was expanded. The ions were attracted by the grafted DEA or TEA, which are N and O-donors and readily form complexes with metals, particularly with the Cu(II). PMID:26057107

  10. Band structure of hydrogenated silicene on Ag(111): Evidence for half-silicane

    NASA Astrophysics Data System (ADS)

    Wang, W.; Olovsson, W.; Uhrberg, R. I. G.

    2016-02-01

    In the case of graphene, hydrogenation removes the conductivity due to the bands forming the Dirac cone by opening up a band gap. This type of chemical functionalization is of the utmost importance for electronic applications. As predicted by theoretical studies, a similar change in the band structure is expected for silicene, the closest analog to graphene. We here report a study of the atomic and electronic structures of hydrogenated silicene with hydrogen on one side, the so-called half-silicane. The ("2 √{3 }×2 √{3 } ") phase of silicene on Ag(111) was used in this Rapid Communication since it can be formed homogeneously across the entire surface of the Ag substrate. Low-energy electron diffraction and scanning tunneling microscopy data clearly show that hydrogenation changes the structure of silicene on Ag(111) resulting in a (1 × 1) periodicity with respect to the silicene lattice. The hydrogenated silicene also exhibits a quasiregular (2 √{3 }×2 √{3 } )-like arrangement of vacancies. Angle-resolved photoelectron spectroscopy revealed two dispersive bands which can be unambiguously assigned to half-silicane. The common top of these bands is located at ˜0.9 eV below the Fermi level. We find that the experimental bands are closely reproduced by the theoretical band structure of free-standing silicene with H adsorbed on the upper hexagonal sublattice.

  11. Binding energies and electronic structures of adsorbed titanium chains on carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Yang, Chih-Kai; Zhao, Jijun; Lu, Jianping

    2002-03-01

    Our calculations based on first principles have shown that titanium is much favored energetically over gold and aluminum to form a continuous chain on a variety of single-wall carbon nanotubes (SWNT). Results from two zigzag nanotubes, (10,0) and (14,0), and two armchairs, (6,6) and (8,8), indicate that binding energy for a Ti-adsorbed SWNT is generally six to seven eV per unit cell larger than a Au or Al-adsorbed SWNT. Furthermore, the adsorbed Ti chain generates additional states in the band gaps of the two semi-conducting zigzag nanotubes, transforming them into metals.

  12. Dephenolization of stored olive-mill wastewater, using four different adsorbing matrices to attain a low-cost feedstock for hydrogen photo-production.

    PubMed

    Padovani, Giulia; Pintucci, Cristina; Carlozzi, Pietro

    2013-06-01

    This investigation deals with the conversion of olive-mill wastewater (OMW) into several feedstocks suitable for hydrogen photo-production. The goal was reached by means of two sequential steps: (i) a pre-treatment process of stored-OMW for the removal of polyphenols, which made it possible to obtain several effluents, and (ii) a photo-fermentative process for hydrogen production by means of Rhodopseudomonas palustris sp. Four different adsorbent matrices (Azolla, granular active carbon, resin, and zeolite) were used to dephenolize stored-OMW. The four liquid fractions attained by using the above process created the same number of effluents, and these were diluted with water and then used for hydrogen photo-production. The maximum hydrogen production rate (14.31 mL/L/h) was attained with the photo-fermenter containing 25% of the effluent, which came from the pre-treatment of stored-OMW using granular active carbon. Using the carbon effluent as feedstock, the greatest light conversion efficiency of 2.29% was achieved. PMID:23612177

  13. Phosphate adsorption on aluminum-impregnated mesoporous silicates: surface structure and behavior of adsorbents.

    PubMed

    Shin, Eun Woo; Han, James S; Jang, Min; Min, Soo-Hong; Park, Jae Kwang; Rowell, Roger M

    2004-02-01

    Phosphorus from excess fertilizers and detergents ends up washing into lakes, creeks, and rivers. This overabundance of phosphorus causes excessive aquatic plant and algae growth and depletes the dissolved oxygen supply in the water. In this study, aluminum-impregnated mesoporous adsorbents were tested for their ability to remove phosphate from water. The surface structure of the materials was investigated with X-ray diffraction (XRD), a N2 adsorption-desorption technique, Fourier transform-infrared (FT-IR), and X-ray photoelectron spectroscopy (XPS) to understand the effect of surface properties on the adsorption behavior of phosphate. The mesoporous materials were loaded with Al components by reaction with surface silanol groups. In the adsorption test, the Al-impregnated mesoporous materials showed fast adsorption kinetics as well as high adsorption capacities, compared with activated alumina. The uniform mesopores of the Al-impregnated mesoporous materials caused the diffusion rate in the adsorption process to increase, which in turn caused the fast adsorption kinetics. High phosphate adsorption capacities of the Al-impregnated mesoporous materials were attributed to not only the increase of surface hydroxyl density on Al oxide due to well-dispersed impregnation of Al components but also the decrease in stoichiometry of surface hydroxyl ions to phosphate by the formation of monodentate surface complexes. PMID:14968882

  14. A surface extended X-ray absorption fine structure study of tellurium adsorbed onto Si(100)

    NASA Astrophysics Data System (ADS)

    Burgess, S. R.; Cowie, B. C. C.; Wilks, S. P.; Dunstan, P. R.; Dunscombe, C. J.; Williams, R. H.

    1996-09-01

    The adsorption of tellurium on Si(100) has been studied using surface extended X-ray adsorption fine structure (SEXAFS) and X-ray standing wave spectroscopy (XSW). This particular system is of interest due to its potential applicability in the surfactant aided growth of CdHgTeCdTeSi(100) based infra-red detectors. The Te/Si(100) structure was generated by depositing a thick layer (˜ 100 Å) of CdTe onto a clean Si (2 × 1) double domain surface, and annealing the sample to 350°C. This resulted is a ˜ 1 ML Te terminated surface where the (2 × 1) reconstruction was lost in favour of a (1 × 1) symmetry. X-ray absorption of the Te L 3 edge ( E = 4341 eV), with a photon energy range of 4440-4700 eV, was probed using a total yield detection scheme. The SEXAFS results indicated that the Te atoms sat in 2-fold bridge sites directly above a fourth layer Si atom. The corresponding bond length was measured to be 2.52 ± 0.05 Å. The XSW measurements of the (400) reflection gave a coherent position of 1.63 ± 0.03 Å and a coherent fraction of 0.65. This is consistent with the breaking of the SiSi dimers and thus could be an example of the phenomena of adsorbate-induced dereconstruction of the surface. These results are compared with those of Bennet et al. who examined a similar system using soft X-ray photoemission (SXPS) and the STM study of Yoshikawa et al.

  15. Geometries and electronic structures of the hydrogenated diamond (100) surface upon exposure to active ions: A first principles study

    NASA Astrophysics Data System (ADS)

    Liu, Feng-Bin; Li, Jing-Lin; Chen, Wen-Bin; Cui, Yan; Jiao, Zhi-Wei; Yan, Hong-Juan; Qu, Min; Di, Jie-Jian

    2016-02-01

    To elucidate the effects of physisorbed active ions on the geometries and electronic structures of hydrogenated diamond films, models of HCO 3 - , H3O+, and OH- ions physisorbed on hydrogenated diamond (100) surfaces were constructed. Density functional theory was used to calculate the geometries, adsorption energies, and partial density of states. The results showed that the geometries of the hydrogenated diamond (100) surfaces all changed to different degrees after ion adsorption. Among them, the H3O+ ion affected the geometry of the hydrogenated diamond (100) surfaces the most. This is well consistent with the results of the calculated adsorption energies, which indicated that a strong electrostatic attraction occurs between the hydrogenated diamond (100) surface and H3O+ ions. In addition, electrons transfer significantly from the hydrogenated diamond (100) surface to the adsorbed H3O+ ion, which induces a downward shift in the HOMO and LUMO energy levels of the H3O+ ion. However, for active ions like OH- and HCO 3 - , no dramatic change appears for the electronic structures of the adsorbed ions.

  16. Hydrogen embrittlement of structural alloys. A technology survey

    NASA Technical Reports Server (NTRS)

    Carpenter, J. L., Jr.; Stuhrke, W. F.

    1976-01-01

    Technical abstracts for about 90 significant documents relating to hydrogen embrittlement of structural metals and alloys are reviewed. Particular note was taken of documents regarding hydrogen effects in rocket propulsion, aircraft propulsion and hydrogen energy systems, including storage and transfer systems.

  17. Fundamental characteristics of synthetic adsorbents intended for industrial chromatographic separations.

    PubMed

    Adachi, Tadashi; Isobe, Eiji

    2004-05-14

    With the aim of obtaining comprehensive information on the selection of synthetic adsorbents for industrial applications, effect of pore and chemical structure of industrial-grade synthetic adsorbents on adsorption capacity of several pharmaceutical compounds was investigated. For relatively low molecular mass compounds, such as cephalexin, berberine chloride and tetracycline hydrochloride, surface area per unit volume of polystyrenic adsorbents dominated the equilibrium adsorption capacity. On the contrary, effect of pore size of the polystyrenic adsorbents on the equilibrium adsorption capacity was observed for relatively high molecular mass compounds, such as rifampicin, Vitamin B12 and insulin. Polystyrenic adsorbent with high surface area and small pore size showed small adsorption capacity for relatively high molecular mass compounds, whereas polystyrenic adsorbent with relatively small surface area but with large pore size showed large adsorption capacity. Effect of chemical structure on the equilibrium adsorption capacity of several pharmaceutical compounds was also studied among polystyrenic, modified polystyrenic and polymethacrylic adsorbents. The modified polystyrenic adsorbent showed larger adsorption capacity for all compounds tested in this study due to enhanced hydrophobicity. The polymethacrylic adsorbent possessed high adsorption capacity for rifampicin and insulin, but it showed lower adsorption capacity for the other compounds studied. This result may be attributed to hydrogen bonding playing major role for the adsorption of compounds on polymethacrylic adsorbent. Furthermore, column adsorption experiments were operated to estimate the effect of pore characteristics of the polystyrenic adsorbents on dynamic adsorption behavior, and it is found that both surface area and pore size of the polystyrenic adsorbents significantly affect the dynamic adsorption capacity as well as flow rate. PMID:15139411

  18. Modeling the construction of polymeric adsorbent media: Effects of counter-ions on ligand immobilization and pore structure

    NASA Astrophysics Data System (ADS)

    Riccardi, Enrico; Wang, Jee-Ching; Liapis, Athanasios I.

    2014-02-01

    Molecular dynamics modeling and simulations are employed to study the effects of counter-ions on the dynamic spatial density distribution and total loading of immobilized ligands as well as on the pore structure of the resultant ion exchange chromatography adsorbent media. The results show that the porous adsorbent media formed by polymeric chain molecules involve transport mechanisms and steric resistances which cause the charged ligands and counter-ions not to follow stoichiometric distributions so that (i) a gradient in the local nonelectroneutrality occurs, (ii) non-uniform spatial density distributions of immobilized ligands and counter-ions are formed, and (iii) clouds of counter-ions outside the porous structure could be formed. The magnitude of these counter-ion effects depends on several characteristics associated with the size, structure, and valence of the counter-ions. Small spherical counter-ions with large valence encounter the least resistance to enter a porous structure and their effects result in the formation of small gradients in the local nonelectroneutrality, higher ligand loadings, and more uniform spatial density distributions of immobilized ligands, while the formation of exterior counter-ion clouds by these types of counter-ions is minimized. Counter-ions with lower valence charges, significantly larger sizes, and elongated shapes, encounter substantially greater steric resistances in entering a porous structure and lead to the formation of larger gradients in the local nonelectroneutrality, lower ligand loadings, and less uniform spatial density distributions of immobilized ligands, as well as substantial in size exterior counter-ion clouds. The effects of lower counter-ion valence on pore structure, local nonelectroneutrality, spatial ligand density distribution, and exterior counter-ion cloud formation are further enhanced by the increased size and structure of the counter-ion. Thus, the design, construction, and functionality of

  19. Modeling the construction of polymeric adsorbent media: effects of counter-ions on ligand immobilization and pore structure.

    PubMed

    Riccardi, Enrico; Wang, Jee-Ching; Liapis, Athanasios I

    2014-02-28

    Molecular dynamics modeling and simulations are employed to study the effects of counter-ions on the dynamic spatial density distribution and total loading of immobilized ligands as well as on the pore structure of the resultant ion exchange chromatography adsorbent media. The results show that the porous adsorbent media formed by polymeric chain molecules involve transport mechanisms and steric resistances which cause the charged ligands and counter-ions not to follow stoichiometric distributions so that (i) a gradient in the local nonelectroneutrality occurs, (ii) non-uniform spatial density distributions of immobilized ligands and counter-ions are formed, and (iii) clouds of counter-ions outside the porous structure could be formed. The magnitude of these counter-ion effects depends on several characteristics associated with the size, structure, and valence of the counter-ions. Small spherical counter-ions with large valence encounter the least resistance to enter a porous structure and their effects result in the formation of small gradients in the local nonelectroneutrality, higher ligand loadings, and more uniform spatial density distributions of immobilized ligands, while the formation of exterior counter-ion clouds by these types of counter-ions is minimized. Counter-ions with lower valence charges, significantly larger sizes, and elongated shapes, encounter substantially greater steric resistances in entering a porous structure and lead to the formation of larger gradients in the local nonelectroneutrality, lower ligand loadings, and less uniform spatial density distributions of immobilized ligands, as well as substantial in size exterior counter-ion clouds. The effects of lower counter-ion valence on pore structure, local nonelectroneutrality, spatial ligand density distribution, and exterior counter-ion cloud formation are further enhanced by the increased size and structure of the counter-ion. Thus, the design, construction, and functionality of

  20. The role of adsorbed hydrogen species in the dehydrogenation and hydrocracking of saturated hydrocarbons on supported metal catalysts

    NASA Astrophysics Data System (ADS)

    Babenkova, L. V.; Naidina, I. N.

    1994-07-01

    The role of certain hydrogen absorption complexes in the dehydrogenation and hydrocracking of hydrocarbons on low-percentage one-component, (Pt, Pd/Al2O3) and bimetallic (Pd-Co, Pd-Ce, Pt-Co, Pt-Sn/Al2O3) catalysts is discussed. It is shown that the combination of metals in reduced forms and forms oxidised to different extents on the catalyst surfaces is responsible for their high capacity for the chemisorption of hydrogen, the wide range of its energetic inhomogeneity, and the high activity of the catalysts in the conversion of saturated hydrocarbons. Catalysts containing on the surface mainly sites for the type Hδ- chemisorption are the most active in the dehydrogenation of hydrocarbons, whereas specimens chemisorbing hydrogen mainly in the Hδ+ form are the most active in the hydrockracking of hydrocarbons. It is concluded that the strongly bound atomic hydrogen Hδ+ plays a dual role, since it not only participates directly in the dehydrogenation reaction but also promotes the reduction of the electron-deficient surface centres, which optimises the number of centres for the activation of C-H bonds. The bibliography includes 75 references.

  1. Rate inhibition of steam gasification of adsorbed hydrogen. Technical progress report, October 1, 1994--December 31, 1994

    SciTech Connect

    Miller, D.J.

    1995-04-01

    Work during the fifth quarter of the grant period has involved both gasification experiments in steam and hydrogen and continued development of the reaction apparatus and analytical methods. Most of the latter work has focused on mass spectrometric analysis of the effluent gases to obtain better response factors and to reduce background signals resulting from impurities in the reacting gas stream.

  2. Structure and Properties of Tactic Hydrogenated Polynorbornenes

    NASA Astrophysics Data System (ADS)

    Burns, Adam B.; Register, Richard A.

    Tacticity is one of the most important structural parameters for determining the physical properties of a polymer. A high degree of steroregularity typically promotes crystallization, with different tacticities giving rise to differences in crystal structure, melting point, and degree of crystallinity. In polynorbornene (PN) made by ring-opening metathesis polymerization (ROMP), tacticity is determined by the relative configuration of the nonplanar cyclopentylene rings enchained in the backbone. Traditional ROMP initiators yield atactic polymers (aPN); however, recent advances in catalyst design have produced both isotactic and syndiotactic PN. Newly reported cis,isotactic- and cis,syndiotactic-PNs were catalytically hydrogenated (abbreviated ihPN and shPN, respectively) without altering the tacticity. The thermal and structural characteristics of ihPN and shPN were studied by differential scanning calorimetry (DSC) and wide-angle x-ray scattering (WAXS) and compared to that of ahPN. Remarkably, all three polymers are semicrystalline, each with a distinct crystal structure. ihPN has a nominal melting point of 165 C, more than 20 C above that of ahPN. WAXS patterns of melt-drawn fibers of ihPN show few strong reflections indicative of either a highly symmetric unit cell or poor long-range order. ihPN fibers also exhibit a crystal-crystal transition near 130 C, which is not fully reversible on subsequent cooling. On the other hand, shPN has a nominal melting point some 15 C below that of ahPN, and shPN fibers show no evidence of polymorphism.

  3. Electronic structure study on 2D hydrogenated Icosagens nitride nanosheets

    NASA Astrophysics Data System (ADS)

    Ramesh, S.; Marutheeswaran, S.; Ramaclus, Jerald V.; Paul, Dolon Chapa

    2014-12-01

    Metal nitride nanosheets has attracted remarkable importance in surface catalysis due to its characteristic ionic nature. In this paper, using density functional theory, we investigate geometric stability and electronic properties of hydrogenated Icosagen nitride nanosheets. Binding energy of the sheets reveals hydrogenation is providing more stability. Band structure of the hydrogenated sheets is found to be n-type semiconductor. Partial density of states shows metals (B, Al, Ga and In) and its hydrogens dominating in the Fermi region. Mulliken charge analysis indications that hydrogenated nanosheets are partially hydridic surface nature except boron nitride.

  4. The effect of grain boundaries and adsorbates on the electrical properties of hydrogenated ultra nano crystalline diamond.

    SciTech Connect

    Gan, L.; Bolker, A.; Saguy, C.; Kalish, R.; Tan, D. L.; Tay, B. K.; Gruen, D.; Bruno, P.; Materials Science Division; Technion Haifa; Nanyang Technological Univ.

    2009-02-26

    The results of a comprehensive study on the temperature dependence of the electrical properties of hydrogenated and air exposed undoped UNCD layers following heating/cooling cycles are presented. The results clearly show that, in contrast to hydrogenated and air exposed single crystal type IIa diamond, which exhibits a clear highly conductive p-type surface layer, the electrical properties of hydrogen and H{sub 2}O exposure of UNCD are determined by the properties of the entire layer. The changes in the electrical conductivity of UNCD as a result of heating are governed by two different processes: (i) Loss of water from the external surface that takes place at about 150 C. This process is reversible, reviving the electrical properties upon exposure to humidity, just like in single crystalline diamond.(ii) Modification of the inter-grain material, which occurs at higher temperatures possibly due to H diffusion and passivation of some dangling bonds in the inter-grain material. This increases the resistivity in an irreversible manner. The conduction mechanism in the inter-grain material is characterized by variable range hopping in band tails thus indirectly proving that the material between the grains is some kind of amorphous carbon.

  5. Adsorbent and adsorbent bed for materials capture and separation processes

    SciTech Connect

    Liu, Wei

    2011-01-25

    A method device and material for performing adsorption wherein a fluid mixture is passed through a channel in a structured adsorbent bed having a solid adsorbent comprised of adsorbent particles having a general diameter less than 100 um, loaded in a porous support matrix defining at least one straight flow channel. The adsorbent bed is configured to allow passage of a fluid through said channel and diffusion of a target material into said adsorbent under a pressure gradient driving force. The targeted molecular species in the fluid mixture diffuses across the porous support retaining layer, contacts the adsorbent, and adsorbs on the adsorbent, while the remaining species in the fluid mixture flows out of the channel.

  6. Adlayer structure dependent ultrafast desorption dynamics in carbon monoxide adsorbed on Pd (111).

    PubMed

    Hong, Sung-Young; Xu, Pan; Camillone, Nina R; White, Michael G; Camillone, Nicholas

    2016-07-01

    We report our ultrafast photoinduced desorption investigation of the coverage dependence of substrate-adsorbate energy transfer in carbon monoxide adlayers on the (111) surface of palladium. As the CO coverage is increased, the adsorption site population shifts from all threefold hollows (up to 0.33 ML), to bridge and near bridge (>0.5 to 0.6 ML) and finally to mixed threefold hollow plus top site (at saturation at 0.75 ML). We show that between 0.24 and 0.75 ML this progression of binding site motifs is accompanied by two remarkable features in the ultrafast photoinduced desorption of the adsorbates: (i) the desorption probability increases roughly two orders magnitude, and (ii) the adsorbate-substrate energy transfer rate observed in two-pulse correlation experiments varies nonmonotonically, having a minimum at intermediate coverages. Simulations using a phenomenological model to describe the adsorbate-substrate energy transfer in terms of frictional coupling indicate that these features are consistent with an adsorption-site dependent electron-mediated energy coupling strength, ηel, that decreases with binding site in the order: three-fold hollow > bridge and near bridge > top site. This weakening of ηel largely counterbalances the decrease in the desorption activation energy that accompanies this progression of adsorption site motifs, moderating what would otherwise be a rise of several orders of magnitude in the desorption probability. Within this framework, the observed energy transfer rate enhancement at saturation coverage is due to interadsorbate energy transfer from the copopulation of molecules bound in three-fold hollows to their top-site neighbors. PMID:27394118

  7. Adlayer structure dependent ultrafast desorption dynamics in carbon monoxide adsorbed on Pd (111)

    NASA Astrophysics Data System (ADS)

    Hong, Sung-Young; Xu, Pan; Camillone, Nina R.; White, Michael G.; Camillone, Nicholas

    2016-07-01

    We report our ultrafast photoinduced desorption investigation of the coverage dependence of substrate-adsorbate energy transfer in carbon monoxide adlayers on the (111) surface of palladium. As the CO coverage is increased, the adsorption site population shifts from all threefold hollows (up to 0.33 ML), to bridge and near bridge (>0.5 to 0.6 ML) and finally to mixed threefold hollow plus top site (at saturation at 0.75 ML). We show that between 0.24 and 0.75 ML this progression of binding site motifs is accompanied by two remarkable features in the ultrafast photoinduced desorption of the adsorbates: (i) the desorption probability increases roughly two orders magnitude, and (ii) the adsorbate-substrate energy transfer rate observed in two-pulse correlation experiments varies nonmonotonically, having a minimum at intermediate coverages. Simulations using a phenomenological model to describe the adsorbate-substrate energy transfer in terms of frictional coupling indicate that these features are consistent with an adsorption-site dependent electron-mediated energy coupling strength, ηel, that decreases with binding site in the order: three-fold hollow > bridge and near bridge > top site. This weakening of ηel largely counterbalances the decrease in the desorption activation energy that accompanies this progression of adsorption site motifs, moderating what would otherwise be a rise of several orders of magnitude in the desorption probability. Within this framework, the observed energy transfer rate enhancement at saturation coverage is due to interadsorbate energy transfer from the copopulation of molecules bound in three-fold hollows to their top-site neighbors.

  8. Stability, structural and electronic properties of benzene molecule adsorbed on free standing Au layer

    NASA Astrophysics Data System (ADS)

    Katoch, Neha; Kapoor, Pooja; Sharma, Munish; Kumar, Ashok; Ahluwalia, P. K.

    2016-05-01

    We report stability and electronic properties of benzene molecule adsorbed on the Au atomic layer within the framework of density function theory (DFT). Horizontal configuration of benzene on the top site of Au monolayer prefers energetically over other studied configurations. On the adsorption of benzene, the ballistic conductance of Au monolayer is found to decrease from 4G0 to 2G0 suggesting its applications for the fabrications of organic sensor devices based on the Au atomic layers.

  9. Electronic structure and binding geometry of tetraphenylporphyrin-derived molecules adsorbed on metal and metal oxide surfaces

    NASA Astrophysics Data System (ADS)

    Coh, Senia

    Tetraphenylporphyrin (TPP)-derived molecules have been studied extensively as efficient photosensitizers when chemisorbed on the metal oxide substrates in dye-sensitized solar cells. Still, many fundamental electronic properties of the dye/oxide interface are not understood and need careful consideration. In this thesis we present a comprehensive study of the electronic structure, energy level alignment and the adsorption geometry of the TPP-derived dye molecules adsorbed on TiO2(110), ZnO(1120) and Ag(100) single crystal surfaces using ultra-high vacuum (UHV) based surface sensitive techniques. The alignment of the molecular energy levels with respect to the TiO 2 and ZnO band edges for all TPP-derived molecules we studied was found to be insensitive to either the nature of the functional groups located on the phenyl rings, presence of zinc as a central metal ion and different binding geometry of the molecules. Binding geometry, molecule-molecule interaction and the aggregation effects in the adsorbed layer, that were observed in the UV-visible spectra of the molecules adsorbed on ZnO substrate were not observed in the ultraviolet photoemission (UPS) and inverse photoemission (IPS) spectra of the occupied and unoccupied molecular states. Using near edge X-ray absorption fine structure (NEXAFS) and scanning tunneling microscopy (STM), binding geometry of the two representative TPP-derivatives was directly determined to be upright, with the porphyrin ring under large angle with respect to the surface for the p-ZnTCPP molecules and with the porphyrin ring parallel to the surface for the m-ZnTCPP molecules. We observe that the energies and the energy level alignment of the ZnTPP molecular levels measured in UPS and IPS depend on the substrate on which the molecules are adsorbed (Ag(100) or TiO2(110) single crystal surfaces). The differences are attributed to different charge screening properties of these two materials. Image charges created in the substrates during

  10. Electronic excited states as a probe of surface adsorbate structure and dynamics in liquid xenon

    SciTech Connect

    Peterson, E.S.

    1992-08-01

    A combination of second harmonic generation (SHG) and a simple dipole-dipole interaction model is presented as a new technique for determining adsorbate geometries on surfaces. The polarization dependence of SHG is used to define possible geometries of the adsorbate about the surface normal. Absorption band shifts using geometry constraints imposed by SHG data are derived for a dimer constructed from two arbitrarily placed monomers on the surface using the dipole-dipole interaction potential. These formulae can be used to determine the orientation of the two monomers relative to each other. A simplified version of this formalism is used to interpret absorption band shifts for rhodamine B adsorbed on fused silica. A brief history of the exciton is given with particular detail to Xe. Data are presented for transient absorption at RT in liquid xenon on the picosecond time scale. These are observations of both tunneling through the barrier that separates the free and trapped exciton states and the subsequent trapping of the exciton. In high densities both of these processes are found to occur within 2 to 6 picoseconds in agreement with theories of Kmiecik and Schreiber and of Martin. A threshold density is observed that separates relaxation via single binary collisions and relaxation that proceeds via Martin's resonant energy transfer hopping mechanism.

  11. Electronic excited states as a probe of surface adsorbate structure and dynamics in liquid xenon

    SciTech Connect

    Peterson, E.S.

    1992-08-01

    A combination of second harmonic generation (SHG) and a simple dipole-dipole interaction model is presented as a new technique for determining adsorbate geometries on surfaces. The polarization dependence of SHG is used to define possible geometries of the adsorbate about the surface normal. Absorption band shifts using geometry constraints imposed by SHG data are derived for a dimer constructed from two arbitrarily placed monomers on the surface using the dipole-dipole interaction potential. These formulae can be used to determine the orientation of the two monomers relative to each other. A simplified version of this formalism is used to interpret absorption band shifts for rhodamine B adsorbed on fused silica. A brief history of the exciton is given with particular detail to Xe. Data are presented for transient absorption at RT in liquid xenon on the picosecond time scale. These are observations of both tunneling through the barrier that separates the free and trapped exciton states and the subsequent trapping of the exciton. In high densities both of these processes are found to occur within 2 to 6 picoseconds in agreement with theories of Kmiecik and Schreiber and of Martin. A threshold density is observed that separates relaxation via single binary collisions and relaxation that proceeds via Martin`s resonant energy transfer hopping mechanism.

  12. Structure analysis and photochemistry of adsorbates on platinum and palladium surfaces. [1,2-dichloroethene

    SciTech Connect

    Grassian, V.H.

    1987-05-01

    The vibrational spectra of benzene and toluene adsorbed on Pd(111) indicates at 180K these molecules weakly bond to the surface. The adsorption of benzene and toluene on Pt(111) is much stronger as indicated by large frequency shifts from gas phase values. Pyridine adsorption on both Pt(111) and Pd(111) was studied as a function of temperature. At room temperature pyridine decomposes on the surface to form an ..cap alpha..-pyridyl fragment (NC/sub 5/H/sub 4/) on Pt(111), whereas the molecule remains intact on Pd(111). The electron energy loss spectra of pyridine adsorbed on these surfaces is compared to the ir spectra of two osmium cluster compounds: Os/sub 3/(CO)/sub 11/(NC/sub 5/H/sub 5/), a pyridine complex, and HOs/sub 3/(CO)/sub 10/(NC/sub 5/H/sub 4/), a pyridyl complex. The stronger interaction of these molecules to the platinum surface is a consequence of the stronger bonding of the 5d orbitals as compared to the 4d orbitals. The uv photochemistry of 2-butene and 1,2-dichloroethene when adsorbed on Pt and Pd surfaces was also studied.

  13. Surface Structure and Chemical Switching of Thioctic Acid Adsorbed on Au(111) as Observed Using Near-Edge X-ray Absorption Fine Structure

    SciTech Connect

    Meulenberg, R W; van Buuren, T; Vance, A L; Terminello, L J; Willey, T M; Bostedt, C; Fadley, C S

    2004-01-06

    Thioctic acid (alpha-lipoic acid) is a molecule with a large disulfide-containing base, a short alkyl-chain with four CH{sub 2} units, and a carboxyl termination. Self-assembled monolayer (SAM) films of thioctic acid adsorbed on Au(111) have been investigated with near-edge x-ray absorption fine structure (NEXAFS) spectroscopy and x-ray photoelectron spectroscopy (XPS) to determine film quality, bonding and morphology. Using standard preparation protocols for SAMs, that is, dissolving thioctic acid in ethanol and exposing gold to the solution, results in poor films. These films are highly disordered, contain a mixture of carboxyl and carboxylate terminations, have more than monolayer coverage, and exhibit unbound disulfide. Conversely, forming films by dissolving 1 mmol thioctic acid into 5% acetic acid in ethanol (as previously reported with carboxyl-terminated alkyl-thiols) forms ordered monolayers with small amounts of unbound sulfur. NEXAFS indicates tilted over endgroups with the carboxyl group normal on average 38{sup o} from the surface normal. Slight dichroism in other features indicates alkyl chains statistically more upright than prostrate on the surface. Reflection-absorption Fourier transform infrared (RA-FTIR) spectra indicate hydrogen bonding between neighboring molecules. In such well-formed monolayers, a stark reorientation occurs upon deprotonation of the endgroup by rinsing in a KOH solution. The carboxylate plane normal is now about 66{sup o} from sample normal, a much more upright orientation. Data indicate this reorientation may also cause a more upright orientation to the alkyl portion of the molecules.

  14. Influence of surface charge on the rate, extent, and structure of adsorbed Bovine Serum Albumin to gold electrodes.

    PubMed

    Beykal, Burcu; Herzberg, Moshe; Oren, Yoram; Mauter, Meagan S

    2015-12-15

    The objective of this work is to investigate the rate, extent, and structure of amphoteric proteins with charged solid surfaces over a range of applied potentials and surface charges. We use Electrochemical Quartz Crystal Microbalance with Dissipation Monitoring (E-QCM-D) to investigate the adsorption of amphoteric Bovine Serum Albumin (BSA) to a gold electrode while systematically varying the surface charge on the adsorbate and adsorbent by manipulating pH and applied potential, respectively. We also perform cyclic voltammetry-E-QCM-D on an adsorbed layer of BSA to elucidate conformational changes in response to varied applied potentials. We confirm previous results demonstrating that increasing magnitude of applied potential on the gold electrode is positively correlated with increasing mass adsorption when the protein and the surface are oppositely charged. On the other hand, we find that the rate of BSA adsorption is not governed by simple electrostatics, but instead depends on solution pH, an observation not well documented in the literature. Cyclic voltammetry with simultaneous E-QCM-D measurements suggest that BSA protein undergoes a conformational change as the surface potential varies. PMID:26348658

  15. Adsorption of hydrogen sulfide onto activated carbon fibers: effect of pore structure and surface chemistry.

    PubMed

    Feng, Wenguo; Kwon, Seokjoon; Borguet, Eric; Vidic, Radisav

    2005-12-15

    To understand the nature of H2S adsorption onto carbon surfaces under dry and anoxic conditions, the effects of carbon pore structure and surface chemistry were studied using activated carbon fibers (ACFs) with different pore structures and surface areas. Surface pretreatments, including oxidation and heattreatment, were conducted before adsorption/desorption tests in a fixed-bed reactor. Raw ACFs with higher surface area showed greater adsorption and retention of sulfur, and heat treatment further enhanced adsorption and retention of sulfur. The retained amount of hydrogen sulfide correlated well with the amount of basic functional groups on the carbon surface, while the desorbed amount reflected the effect of pore structure. Temperature-programmed desorption (TPD) and thermal gravimetric analysis (TGA) showed that the retained sulfurous compounds were strongly bonded to the carbon surface. In addition, surface chemistry of the sorbent might determine the predominant form of adsorbate on the surface. PMID:16475362

  16. Li adsorption, hydrogen storage and dissociation using monolayer MoS2: an ab initio random structure searching approach.

    PubMed

    Putungan, Darwin Barayang; Lin, Shi-Hsin; Wei, Ching-Ming; Kuo, Jer-Lai

    2015-05-01

    Utilizing ab initio random structure searching, we investigated Li adsorption on MoS2 and hydrogen molecules on Li-decorated MoS2. In contrast to graphene, Li can be adsorbed on both sides of MoS2, with even stronger binding than on the single side. We found that high coverages of Li can be attained without Li clustering, which is essential for hydrogen storage and Li ion batteries. Moreover, regarding battery applications, Li diffusion was also found to be easy. The fully-lithiated MoS2 can then adsorb H2 with 4.4 wt%. Interestingly, our calculations revealed that hydrogen molecules can be dissociated at high Li coverage with a minimal energy barrier. We further showed that the dissociated hydrogen atom can readily diffuse on the surface, thus keeping the reaction site active. We therefore propose that Li-MoS2 could be an inexpensive alternative catalyst to noble metals in hydrogen dissociation reactions. PMID:25849099

  17. Adsorbent phosphates

    NASA Technical Reports Server (NTRS)

    Watanabe, S.

    1983-01-01

    An adsorbent which uses as its primary ingredient phosphoric acid salts of zirconium or titanium is presented. Production methods are discussed and several examples are detailed. Measurements of separating characteristics of some gases using the salts are given.

  18. Quantum chemical investigation on the role of Li adsorbed on anatase (101) surface nano-materials on the storage of molecular hydrogen.

    PubMed

    Srinivasadesikan, V; Raghunath, P; Lin, M C

    2015-06-01

    Lithiation of TiO2 has been shown to enhance the storage of hydrogen up to 5.6 wt% (Hu et al. J Am Chem Soc 128:11740-11741, 2006). The mechanism for the process is still unknown. In this work we have carried out a study on the adsorption and diffusion of Li atoms on the surface and migration into subsurface layers of anatase (101) by periodic density functional theory calculations implementing on-site Coulomb interactions (DFT+U). The model consists of 24 [TiO2] units with 11.097 × 7.655 Å(2) surface area. Adsorption energies have been calculated for different Li atoms (1-14) on the surface. A maximum of 13 Li atoms can be accommodated on the surface at two bridged O, Ti-O, and Ti atom adsorption sites, with 83 kcal mol(-1) adsorption energy for a single Li atom adsorbed between two bridged O atoms from where it can migrate into the subsurface layer with 27 kcal mol(-1) energy barrier. The predicted adsorption energies for H2 on the lithiated TiO2 (101) surface with 1-10 Li atoms revealed that the highest adsorption energies occurred on 1-Li, 5-Li, and 9-Li surfaces with 3.5, 4.4, and 7.6 kcal mol(-1), respectively. The values decrease rapidly with additional H2 co-adsorbed on the lithiated surfaces; the maximum H2 adsorption on the 9Li-TiO2(a) surface was estimated to be only 0.32 wt% under 100 atm H2 pressure at 77 K. The result of Bader charge analysis indicated that the reduction of Ti occurred depending on the Li atoms covered on the TiO2 surface. PMID:25966674

  19. Hydrogen in magnesium palladium thin layer structures

    NASA Astrophysics Data System (ADS)

    Kruijtzer, G. L.

    2008-02-01

    In this thesis, the study of hydrogen storage, absorption and desorption in magnesium layers is described. The magnesium layers have a thickness of 50-500 nm and are covered by a palladium layer which acts as a hydrogen dissociation/association catalyst. The study was preformed under ultra high vacuum conditions to avoid oxygen contamination. The main analysis techniques were RBS, ERD and TDS.

  20. Structure and energetics of hydrogen-bonded networks of methanol on close packed transition metal surfaces

    NASA Astrophysics Data System (ADS)

    Murphy, Colin J.; Carrasco, Javier; Lawton, Timothy J.; Liriano, Melissa L.; Baber, Ashleigh E.; Lewis, Emily A.; Michaelides, Angelos; Sykes, E. Charles H.

    2014-07-01

    Methanol is a versatile chemical feedstock, fuel source, and energy storage material. Many reactions involving methanol are catalyzed by transition metal surfaces, on which hydrogen-bonded methanol overlayers form. As with water, the structure of these overlayers is expected to depend on a delicate balance of hydrogen bonding and adsorbate-substrate bonding. In contrast to water, however, relatively little is known about the structures methanol overlayers form and how these vary from one substrate to another. To address this issue, herein we analyze the hydrogen bonded networks that methanol forms as a function of coverage on three catalytically important surfaces, Au(111), Cu(111), and Pt(111), using a combination of scanning tunneling microscopy and density functional theory. We investigate the effect of intermolecular interactions, surface coverage, and adsorption energies on molecular assembly and compare the results to more widely studied water networks on the same surfaces. Two main factors are shown to direct the structure of methanol on the surfaces studied: the surface coverage and the competition between the methanol-methanol and methanol-surface interactions. Additionally, we report a new chiral form of buckled hexamer formed by surface bound methanol that maximizes the interactions between methanol monomers by sacrificing interactions with the surface. These results serve as a direct comparison of interaction strength, assembly, and chirality of methanol networks on Au(111), Cu(111), and Pt(111) which are catalytically relevant for methanol oxidation, steam reforming, and direct methanol fuel cells.

  1. Origin of the periodic structure in the conductance curve of gold nanojunctions in hydrogen environment

    NASA Astrophysics Data System (ADS)

    Jiang, Zhuoling; Wang, Hao; Sanvito, Stefano; Hou, Shimin

    2016-03-01

    The evolution of the atomic structure and the vibrational and electronic transport properties of gold atomic junctions incorporating molecular and atomic hydrogen upon elongation have been investigated with the nonequilibrium Green's function formalism combined with density functional theory. Our calculations show that for the case of gold junctions doped with a single H2 molecule the low-bias conductance drops rapidly with the electrodes' separation, while it remains almost constant if a single H atom replaces the molecule. In contrast, when one considers two H atoms adsorbed on a gold monatomic chain forming an Au-H-Au-H-Au double-bridge structure, the low-bias conductance increases first and then shows a plateau upon stretching the junction, in perfect agreement with experiments on gold nanocontacts in hydrogen environment. Furthermore, also the distribution of the calculated vibrational energies of the two H atoms is consistent with the experimental result in the low-conductance region, demonstrating clear evidence that hydrogen molecules can dissociate on stretched gold monatomic chains. These findings are helpful to improve our understanding of the structure-property relation of gold nanocontacts and also provide a new prospect for gold nanowires being used as chemical sensors and catalysts.

  2. Reversible Hydrogen Storage Materials – Structure, Chemistry, and Electronic Structure

    SciTech Connect

    Robertson, Ian M.; Johnson, Duane D.

    2014-06-21

    To understand the processes involved in the uptake and release of hydrogen from candidate light-weight metal hydride storage systems, a combination of materials characterization techniques and first principle calculation methods have been employed. In addition to conventional microstructural characterization in the transmission electron microscope, which provides projected information about the through thickness microstructure, electron tomography methods were employed to determine the three-dimensional spatial distribution of catalyst species for select systems both before and after dehydrogenation. Catalyst species identification as well as compositional analysis of the storage material before and after hydrogen charging and discharging was performed using a combination of energy dispersive spectroscopy, EDS, and electron energy loss spectroscopy, EELS. The characterization effort was coupled with first-principles, electronic-structure and thermodynamic techniques to predict and assess meta-stable and stable phases, reaction pathways, and thermodynamic and kinetic barriers. Systems studied included:NaAlH4, CaH2/CaB6 and Ca(BH4)2, MgH2/MgB2, Ni-Catalyzed Magnesium Hydride, TiH2-Catalyzed Magnesium Hydride, LiBH4, Aluminum-based systems and Aluminum

  3. Structural changes and intermolecular interactions of filled ice Ic structure for hydrogen hydrate under high pressure

    NASA Astrophysics Data System (ADS)

    Machida, S.; Hirai, H.; Kawamura, T.; Yamamoto, Y.; Yagi, T.

    2010-03-01

    High-pressure experiments of hydrogen hydrate were performed using a diamond anvil cell under conditions of 0.1-44.2 GPa and at room temperature. Also, high pressure Raman studies of solid hydrogen were performed in the pressure range of 0.1-43.7 GPa. X-ray diffractometry (XRD) for hydrogen hydrate revealed that a known high-pressure structure, filled ice Ic structure, of hydrogen hydrate transformed to a new high-pressure structure at approximately 35-40 GPa. A comparison of the Raman spectroscopy of a vibron for hydrogen molecules between hydrogen hydrate and solid hydrogen revealed that the extraction of hydrogen molecules from hydrogen hydrate occurred above 20 GPa. Also, the Raman spectra of a roton revealed that the rotation of hydrogen molecules in hydrogen hydrate was suppressed at around 20 GPa and that the rotation recovered under higher pressure. These results indicated that remarkable intermolecular interactions in hydrogen hydrate between neighboring hydrogen molecules and between guest hydrogen molecules and host water molecules might occur. These intermolecular interactions could produce the stability of hydrogen hydrate.

  4. Angular Resolved X-Ray Absorption Near Edge Structure Investigation of Adsorbed Alkanethiol Monolayers on III-V(110) Surfaces

    NASA Astrophysics Data System (ADS)

    Chassé, T.; Zerulla, D.; Hallmeier, K. H.

    The structure of alkanethiol monolayers on III-V(110) surfaces was studied by analyzing the X-ray absorption near edge structure (XANES) of the carbon K edge. Pronounced absorption maxima were observed for special orientations of the polarization vector of the radiation as revealed from angular-dependent measurements, suggesting a rather well-defined molecular axis of the alkyl chains. From quantitative evaluations of these angular dependences the chains were found to be tilted from the normal towards the [001] direction of the (110) surfaces by 34° and 15° in the case of hexadecanethiol (HDT) adsorption on InP and GaP, respectively. The similarities as well as the differences in tilt angles between the substrates are dicussed in terms of constraints imposed by the surface structure and lattice constants as well as the space requirements of the van der Waals spheres of the adsorbed thiols. A unique feature observed on these monolayers is the nearly complete alignment of the alkyl chains with respect to the azimuthal orientation. We suggest that this adsorbate system represents the case of a single domain orientation within the organic monolayer.

  5. Structure of 4-methylpyridinium Hydrogen Sulfide

    NASA Technical Reports Server (NTRS)

    Andras, Maria T.; Hepp, Aloysius F.; Fanwick, Phillip E.; Martuch, Robert A.; Duraj, Stan A.; Gordon, Edward M.

    1994-01-01

    4-Methylpyridinium hydrogen sulfide, (C6H7NH)HS, M(sub r) = 127.21, consists of C6H7NH(+) cations and HS(-) anions. Z = 2 for the crystal with monoclinic space group Cm (#8), dimensions of a = 8.679(2) A, b = 7.964(1) A, and c = 4.860(2) A, an angle beta of 101.10(2) degrees, and a volume of V = 329.6(3) A(exp 3). R = 0.039 and R(sub w) = 0.048 for 385 reflections with F(sub o)(exp 2) greater than 3 sigma(F(sub o)(exp 2)) and 59 variables. Both the C6H7NH(+) cation and the HS(-) anion lie on crystallographic mirror planes with the N,S, two carbon atoms, and two hydrogen atoms positioned in the planes. The hydrogen atom of the HS(-) anion was not located.

  6. First-principle study of the electronic structure and magnetism of lithium-adsorbed 3d transition-metal phthalocyanines

    NASA Astrophysics Data System (ADS)

    Wang, M.; Hu, Y.; Zhang, Z.; Li, Y.; Zhou, T.; Ren, J.

    2016-02-01

    Based on density functional theory (DFT) calculations, the electronic structures and magnetic properties of 3d transition-metal phthalocyanine (TMPc, TM = Ti, V, Cr, Mn, Fe, Co, Ni and Cu), as well as Li-adsorbed phthalocyanines have been studied. The results show that the pristine TMPcs all have a good D4h symmetry. When there is one Li atom adsorbed on TMPcs directly over (LiTMPc-α) or slantly above (LiTMPc-β) the TM atoms, the geometries and electronic structures will be changed. For LiTMPc-α systems, the central TM atoms will deviate from the molecular plane and the molecules exhibit good C4v symmetry. LiTMPc-β systems are more stable than LiTMPc-α systems but it do not possess D4h and C4v symmetries. The total and local magnetic moments and the charge transfer are also presented. Finally, by using the orbit mixing and splitting theory under D4h and C4v symmetry, we get the ordering of the energy levels of the central TM atoms.

  7. Anomalous fast dynamics of adsorbate overlayers near an incommensurate structural transition.

    PubMed

    Granato, Enzo; Ying, S C; Elder, K R; Ala-Nissila, T

    2013-09-20

    We investigate the dynamics of a compressively strained adsorbed layer on a periodic substrate via a simple two-dimensional model that admits striped and hexagonal incommensurate phases. We show that the mass transport is superfast near the striped-hexagonal phase boundary and in the hexagonal phase. For an initial step profile separating a bare substrate region (or "hole") from the rest of a striped incommensurate phase, the superfast domain wall dynamics leads to a bifurcation of the initial step profile into two interfaces or profiles propagating in opposite directions with a hexagonal phase in between. This yields a theoretical understanding of the recent experiments for the Pb/Si(111) system. PMID:24093278

  8. The structure of PMDA-PDA polyimide monolayers adsorbed on gold surfaces

    NASA Astrophysics Data System (ADS)

    Keil, M.; Paggel, J. J.; Schedel-Niedrig, Th.; Yokoyama, S.; Sotobayashi, H.; Bradshaw, A. M.

    1995-11-01

    Monolayers of the rod-like PMDA-PDA polyimide adsorbed on flame-annealed polycrystalline gold films have been studied with scanning tunnelling microscopy (STM) and X-ray absorption spectroscopy. The polyimide layer was deposited using the Langmuir-Blodgett preparation technique of Imai and Kakimoto. STM measurements in air showed that the polyimide chains were aligned along the <211> directions of the {111}-oriented single crystal regions of the surface. Although {111}-oriented areas were barely identifiable in the corresponding UHV experiments, aligned polymer chains were also observed over large areas of the surface. X-ray absorption measurements on the latter samples at the nitrogen K-edge showed a preferential orientation of the aromatic ring planes.

  9. Nanoporous Gyroid-Structured Epoxy from Block Copolymer Templates for High Protein Adsorbability.

    PubMed

    Wang, Xin-Bo; Lin, Tze-Chung; Hsueh, Han-Yu; Lin, Shih-Chieh; He, Xiao-Dong; Ho, Rong-Ming

    2016-06-28

    Nanoporous epoxy with gyroid texture is fabricated by using a nanoporous polymer with gyroid-forming nanochannels as a template for polymerization of epoxy. The nanoporous polymer template is obtained from the self-assembly of degradable block copolymer, polystyrene-b-poly(l-lactide) (PS-PLLA), followed by hydrolysis of PLLA blocks. Templated polymerization can be conducted under ambient conditions to create well-defined, bicontinuous epoxy networks in a PS matrix. By taking advantage of multistep curing of epoxy, well-ordered robust nanoporous epoxy can be obtained after removal of PS template, giving robust porous materials. The through-hole nanoporous epoxy in the film state can be used as a coated layer to enhance the adsorbability for both lysozyme and bovine serum albumin. PMID:27245380

  10. Exploring the interfacial structure of protein adsorbates and the kinetics of protein adsorption: an in situ high-energy X-ray reflectivity study.

    PubMed

    Evers, Florian; Shokuie, Kaveh; Paulus, Michael; Sternemann, Christian; Czeslik, Claus; Tolan, Metin

    2008-09-16

    The high energy X-ray reflectivity technique has been applied to study the interfacial structure of protein adsorbates and protein adsorption kinetics in situ. For this purpose, the adsorption of lysozyme at the hydrophilic silica-water interface has been chosen as a model system. The structure of adsorbed lysozyme layers was probed for various aqueous solution conditions. The effect of solution pH and lysozyme concentration on the interfacial structure was measured. Monolayer formation was observed for all cases except for the highest concentration. The adsorbed protein layers consist of adsorbed lysozyme molecules with side-on or end-on orientation. By means of time-dependent X-ray reflectivity scans, the time-evolution of adsorbed proteins was monitored as well. The results of this study demonstrate the capabilities of in situ X-ray reflectivity experiments on protein adsorbates. The great advantages of this method are the broad wave vector range available and the high time resolution. PMID:18715021

  11. Influence of molecular structure and adsorbent properties on sorption of organic compounds to a temperature series of wood chars.

    PubMed

    Lattao, Charisma; Cao, Xiaoyan; Mao, Jingdong; Schmidt-Rohr, Klaus; Pignatello, Joseph J

    2014-05-01

    Chars from wildfires and soil amendments (biochars) are strong adsorbents that can impact the fate of organic compounds in soil, yet the effects of solute and adsorbent properties on sorption are poorly understood. We studied sorption of benzene, naphthalene, and 1,4-dinitrobenzene from water to a series of wood chars made anaerobically at different heat treatment temperatures (HTT) from 300 to 700 °C, and to graphite as a nonporous, unfunctionalized reference adsorbent. Peak suppression in the NMR spectrum by sorption of the paramagnetic relaxation probe TEMPO indicated that only a small fraction of char C atoms lie near sorption sites. Sorption intensity for all solutes maximized with the 500 °C char, but failed to trend regularly with N2 or CO2 surface area, micropore volume, mesopore volume, H/C ratio, O/C ratio, aromatic fused ring size, or HTT. A model relating sorption intensity to a weighted sum of microporosity and mesoporosity was more successful. Sorption isotherm linearity declined progressively with carbonization of the char. Application of a thermodynamic model incorporating solvent-water and char-graphite partition coefficients permitted for the first time quantification of steric (size exclusion in pores) and π-π electron donor-acceptor (EDA) free energy contributions, relative to benzene. Steric hindrance for naphthalene increases exponentially from 9 to 16 kJ/mol (∼ 1.6-2.9 log units of sorption coefficient) with the fraction of porosity in small micropores. π-π EDA interactions of dinitrobenzene contribute -17 to -19 kJ/mol (3-3.4 log units of sorption coefficient) to sorption on graphite, but less on chars. π-π EDA interaction of naphthalene on graphite is small (-2 to 2 kJ/mol). The results show that sorption is a complex function of char properties and solute molecular structure, and not very predictable on the basis of readily determined char properties. PMID:24758543

  12. The structures and dynamics of atomic and molecular adsorbates on metal surfaces by scanning tunneling microscopy and low energy electron diffraction

    SciTech Connect

    Yoon, Hyungsuk Alexander

    1996-12-01

    Studies of surface structure and dynamics of atoms and molecules on metal surfaces are presented. My research has focused on understanding the nature of adsorbate-adsorbate and adsorbate-substrate interactions through surface studies of coverage dependency and coadsorption using both scanning tunneling microscopy (STM) and low energy electron diffraction (LEED). The effect of adsorbate coverage on the surface structures of sulfur on Pt(111) and Rh(111) was examined. On Pt(111), sulfur forms p(2x2) at 0.25 ML of sulfur, which transforms into a more compressed ({radical}3x{radical}3)R30{degrees} at 0.33 ML. On both structures, it was found that sulfur adsorbs only in fcc sites. When the coverage of sulfur exceeds 0.33 ML, it formed more complex c({radical}3x7)rect structure with 3 sulfur atoms per unit cell. In this structure, two different adsorption sites for sulfur atoms were observed - two on fcc sites and one on hcp site within the unit cell.

  13. Ground-State Structures of Atomic Metallic Hydrogen

    NASA Astrophysics Data System (ADS)

    McMahon, Jeffrey M.; Ceperley, David M.

    2011-04-01

    Ab initio random structure searching using density functional theory is used to determine the ground-state structures of atomic metallic hydrogen from 500 GPa to 5 TPa. Including proton zero-point motion within the harmonic approximation, we estimate that molecular hydrogen dissociates into a monatomic body-centered tetragonal structure near 500 GPa (rs=1.23) that remains stable to 1 TPa (rs=1.11). At higher pressures, hydrogen stabilizes in an …ABCABC… planar structure that is similar to the ground state of lithium, but with a different stacking sequence. With increasing pressure, this structure compresses to the face-centered cubic lattice near 3.5 TPa (rs=0.92).

  14. Structural sensitivity studies of ethylene hydrogenation on platinum and rhodium surfaces

    SciTech Connect

    Quinlan, M.A. |

    1996-01-01

    The catalytic hydrogenation of ethylene and hydrogen on the well characterized surfaces of the noble metals platinum and rhodium has been studied for the purposes of determining the relative activity of these two substrates as well as the degree of structure sensitivity. The Pt(111) and the Rh(755) single crystal surfaces,as well as Pt and Rh foils, were employed as substrates to study the effect of surface step structure on reactivity. In addition, vibrational spectroscopy studies were performed for ethylene adsorption on the stepped Rh(755) surface. The catalytic reaction were obtained using a combined ultrahigh vacuum chamber coupled with an atmospheric pressure reaction chamber that functioned as a batch reactor. Samples could be prepared using standard surface science techniques and characterized for surface composition and geometry using Auger Electron Spectroscopy and Low Energy Electron Diffraction. A comparison of the reactivity of Rh(111) with the results from this study on Rh(755) allows a direct determination of the effect of step structure on ethylene hydrogenation activity. Structure sensitivity is expected to exhibit orders of magnitude differences in rate as surface orientation is varied. In this case, no significant differences were found, confirming the structure insensitivity of this reaction over this metal. The turnover frequency of the Rh(111) surface, 5 {times} 10{sup 1} s{sup {minus}1}, is in relatively good agreement with the turnover frequency of 9 {times} 10{sup 1} s{sup {minus}1} measured for the Rh(755) surface. Rate measurements made on the Pt(111) surface and the Pt foil are in excellent agreement, both measuring 3 {times} 10{sup 2} s{sup minus}1. Likewise, it is concluded that no strong structure sensitivity for the platinum surfaces exists. High Resolution Electron Energy Loss Spectroscopy studies of adsorbed ethylene on the Rh(755) surface compare favorably with the ethylidyne spectra obtained on the Rh(111) and Rh(100) surfaces.

  15. Benzene derivatives adsorbed to the Ag(111) surface: Binding sites and electronic structure

    SciTech Connect

    Miller, Daniel P.; Tymińska, Nina; Zurek, Eva; Simpson, Scott

    2015-03-14

    Dispersion corrected Density Functional Theory calculations were employed to study the adsorption of benzenes derivatized with functional groups encompassing a large region of the activated/deactivated spectrum to the Ag(111) surface. Benzenes substituted with weak activating or deactivating groups, such as methyl and fluoro, do not have a strong preference for adsorbing to a particular site on the substrate, with the corrugations in the potential energy surface being similar to those of benzene. Strong activating (N(CH{sub 3}){sub 2}) and deactivating (NO{sub 2}) groups, on the other hand, possess a distinct site preference. The nitrogen in the former prefers to lie above a silver atom (top site), but in the latter a hollow hexagonal-closed-packed (H{sub hcp}) site of the Ag(111) surface is favored instead. Benzenes derivatized with classic activating groups donate electron density from their highest occupied molecular orbital to the surface, and those functionalized with deactivating groups withdraw electron density from the surface into orbitals that are unoccupied in the gas phase. For benzenes functionalized with two substituents, the groups that are strongly activating or deactivating control the site preference and the other groups assume sites that are, to a large degree, dictated by their positions on the benzene ring. The relative stabilities of the ortho, meta, and para positional isomers of disubstituted benzenes can, in some cases, be modified by adsorption to the surface.

  16. Development of hydrogen resistant structural alloy NASA-23

    NASA Technical Reports Server (NTRS)

    Bhat, B. N.; Mcpherson, W. B.; Kuruvilla, A. K.; Chen, P. S.; Panda, B.

    1993-01-01

    Hydrogen-resistant alloy NASA-23 was developed specifically as a structural alloy for application in liquid propulsion systems that use hydrogen fuel. NASA-23 was designed to be similar to Alloy 718 in strength, ductility, and corrosion resistance, but with superior resistance to hydrogen environment embrittlement. The alloy is readily processed; it can be both hot and cold worked and is castable and weldable. A material property data base is being generated for both cast and wrought NASA-23. This paper will present the status of alloy development and discuss potential applications in propulsion systems.

  17. Study of hydrogenated silicene: The initialization model of hydrogenation on planar, low buckled and high buckled structures of silicene

    SciTech Connect

    Syaputra, Marhamni Wella, Sasfan Arman; Wungu, Triati Dewi Kencana; Purqon, Acep; Suprijadi

    2015-09-30

    We study the hydrogenation structures possessed by silicene i.e. planar (PL), low buckled (LB) and high buckled (HB). On those structures we found the hydrogenation process occurs with some particular notes. Hydrogen stable position on the silicene surface is determined by its initial configuration. We only considered the fully hydrogenated case with the formula unit (SiH){sub n} for all of these structures. Physical and electronic structure shift after the process are compared with hydrogenated graphene. Moreover, we observed a chemical process in the presence of hydrogen on the PL structure by nudged elastic band (NEB) which illustrates how hydrogen has a significant impact to the force barrier of the PL that changing it from its original structure.

  18. Adsorption isotherms and structure of cationic surfactants adsorbed on mineral oxide surfaces prepared by atomic layer deposition.

    PubMed

    Wangchareansak, Thipvaree; Craig, Vincent S J; Notley, Shannon M

    2013-12-01

    The adsorption isotherms and aggregate structures of adsorbed surfactants on smooth thin-film surfaces of mineral oxides have been studied by optical reflectometry and atomic force microscopy (AFM). Films of the mineral oxides of titania, alumina, hafnia, and zirconia were produced by atomic layer deposition (ALD) with low roughness. We find that the surface strongly influences the admicelle organization on the surface. At high concentrations (2 × cmc) of cetyltrimethylammonium bromide (CTAB), the surfactant aggregates on a titania surface exhibit a flattened admicelle structure with an average repeat distance of 8.0 ± 1.0 nm whereas aggregates on alumina substrates exhibit a larger admicelle with an average separation distance of 10.5 ± 1.0 nm. A wormlike admicelle structure with an average separation distance of 7.0 ± 1.0 nm can be observed on zirconia substrates whereas a bilayered aggregate structure on hafnia substrates was observed. The change in the surface aggregate structure can be related to an increase in the critical packing parameter through a reduction in the effective headgroup area of the surfactant. The templating strength of the surfaces are found to be hafnia > alumina > zirconia > titania. Weakly templating surfaces are expected to have superior biocompatibility. PMID:24224944

  19. Structural and orientation effects on electronic energy transfer between silicon quantum dots with dopants and with silver adsorbates

    SciTech Connect

    Vinson, N.; Freitag, H.; Micha, D. A.

    2014-06-28

    Starting from the atomic structure of silicon quantum dots (QDs), and utilizing ab initio electronic structure calculations within the Förster resonance energy transfer (FRET) treatment, a model has been developed to characterize electronic excitation energy transfer between QDs. Electronic energy transfer rates, K{sub EET}, between selected identical pairs of crystalline silicon quantum dots systems, either bare, doped with Al or P, or adsorbed with Ag and Ag{sub 3}, have been calculated and analyzed to extend previous work on light absorption by QDs. The effects of their size and relative orientation on energy transfer rates for each system have also been considered. Using time-dependent density functional theory and the hybrid functional HSE06, the FRET treatment was employed to model electronic energy transfer rates within the dipole-dipole interaction approximation. Calculations with adsorbed Ag show that: (a) addition of Ag increases rates up to 100 times, (b) addition of Ag{sub 3} increases rates up to 1000 times, (c) collinear alignment of permanent dipoles increases transfer rates by an order of magnitude compared to parallel orientation, and (d) smaller QD-size increases transfer due to greater electronic orbitals overlap. Calculations with dopants show that: (a) p-type and n-type dopants enhance energy transfer up to two orders of magnitude, (b) surface-doping with P and center-doping with Al show the greatest rates, and (c) K{sub EET} is largest for collinear permanent dipoles when the dopant is on the outer surface and for parallel permanent dipoles when the dopant is inside the QD.

  20. Zero-Temperature Structures of Atomic Metallic Hydrogen

    NASA Astrophysics Data System (ADS)

    McMahon, Jeffrey; Ceperley, David

    2011-03-01

    Since the first prediction of an atomic metallic phase of hydrogen by Wigner and Huntington over 75 years ago, there have been many theoretical efforts aimed at determining the crystal structures of the zero-temperature phases. We present results from ab initio random structure searching with density functional theory performed to determine the ground state structures from 500 GPa to 5 TPa. We estimate that molecular hydrogen dissociates into a monatomic body-centered tetragonal structure near 500 GPa (rs = 1.225), which then remains stable to 2.5 TPa (rs = 0.969). At higher pressures, hydrogen stabilizes in an . . . ABCABC . . . planar structure that is remarkably similar to the ground state of lithium, which compresses to the face-centered cubic lattice beyond 5 TPa (rs < 0.86). Our results provide a complete ab initio description of the atomic metallic crystal structures of hydrogen, resolving one of the most fundamental and long outstanding issues concerning the structures of the elements.

  1. Conformational changes of α-lactalbumin adsorbed at oil-water interfaces: interplay between protein structure and emulsion stability.

    PubMed

    Zhai, Jiali; Hoffmann, Søren V; Day, Li; Lee, Tzong-Hsien; Augustin, Mary Ann; Aguilar, Marie-Isabel; Wooster, Tim J

    2012-02-01

    The conformation and structural dimensions of α-lactalbumin (α-La) both in solution and adsorbed at oil-water interfaces of emulsions were investigated using synchrotron radiation circular dichroism (SRCD) spectroscopy, front-face tryptophan fluorescence (FFTF) spectroscopy, and dual polarization interferometry (DPI). The near-UV SRCD and the FFTF results demonstrated that the hydrophobic environment of the aromatic residues located in the hydrophobic core of native α-La was significantly altered upon adsorption, indicating the unfolding of the hydrophobic core of α-La upon adsorption. The far-UV SRCD results showed that adsorption of α-La at oil-water interfaces created a new non-native secondary structure that was more stable to thermally induced conformational changes. Specifically, the α-helical conformation increased from 29.9% in solution to 45.8% at the tricaprylin-water interface and to 58.5% at the hexadecane-water interface. However, the β-sheet structure decreased from 18.0% in solution to less than 10% at both oil-water interfaces. The DPI study showed that adsorption of α-La to a hydrophobic C18-water surface caused a change in the dimensions of α-La from the native globule-like shape (2.5-3.7 nm) to a compact/dense layer approximately 1.1 nm thick. Analysis of the colloidal stability of α-La stabilized emulsions showed that these emulsions were physically stable against droplet flocculation at elevated temperatures both in the absence and in the presence of 120 mM NaCl. In the absence of salt, the thermal stability of emulsions was due to the strong electrostatic repulsion provided by the adsorbed α-La layer, which was formed after the adsorption and structural rearrangement. In the presence of salt, although the electrostatic repulsion was reduced via electrostatic screening, heating did not induce strong and permanent droplet flocculation. The thermal stability of α-La stabilized emulsions in the presence of salt is a combined effect of

  2. Carbon-Oxygen Hydrogen Bonding in Biological Structure and Function

    PubMed Central

    Horowitz, Scott; Trievel, Raymond C.

    2012-01-01

    Carbon-oxygen (CH···O) hydrogen bonding represents an unusual category of molecular interactions first documented in biological structures over 4 decades ago. Although CH···O hydrogen bonding has remained generally underappreciated in the biochemical literature, studies over the last 15 years have begun to yield direct evidence of these interactions in biological systems. In this minireview, we provide a historical context of biological CH···O hydrogen bonding and summarize some major advancements from experimental studies over the past several years that have elucidated the importance, prevalence, and functions of these interactions. In particular, we examine the impact of CH···O bonds on protein and nucleic acid structure, molecular recognition, and enzyme catalysis and conclude by exploring overarching themes and unresolved questions regarding unconventional interactions in biomolecular structure. PMID:23048026

  3. Auroral zone effects on hydrogen geocorona structure and variability

    NASA Technical Reports Server (NTRS)

    Moore, T. E.; Biddle, A. P.; Waite, J. H., Jr.; Killeen, T. L.

    1985-01-01

    The effect of diurnal and magnetospheric modulations on the structure of the hydrogen geocorona is analyzed on the basis of recent observations. Particular attention is given to the enhancement of neutral escape by plasma effects, including the recently observed phenomenon of low-altitude ion acceleration. It is found that, while significant fluxes of neutral H should be produced by transverse ion acceleration in the auroral zone, the process is probably insufficient to account for the observed polar depletion of hydrogen atoms. Analysis of recent exospheric temperature measurements from the Dynamics Explorer-2 satellite suggest that neutral heating in and near the high latitude cusp may be the major contributor to depleted atomic hydrogen densities at high latitudes. Altitude profiles of the production rates for escaping neutral hydrogen atoms during periods of maximum, minimum, and typical solar activity are provided.

  4. Effect of the internal motions of an adsorbate on the characteristics of adsorption for structurally heterogenous surfaces of slit-like pores

    NASA Astrophysics Data System (ADS)

    Tovbin, Yu. K.; Zaitseva, E. S.; Rabinovich, A. B.

    2016-01-01

    The effect of internal motions of an adsorbate on the local characteristics of adsorption and layering phase diagrams are studied for structurally heterogeneous surfaces of slit-like pores. A molecular model describing adsorbate distributions inside slit-like pores, which is based on discrete distribution functions (lattice gas model), is used for the calculation. Molecular distributions are calculated by the Lennard-Jones potential (12-6) in a quasi-chemical approximation reflecting the effects of direct correlations of interacting particles and for the combined interaction of an adsorbate with walls in the average potential approximation (9-3) and the short-range Lennard-Jones potential for structurally heterogeneous surface areas. The conclusion is made that internal motions reflect the vibrational motion of molecules within a modified quasi-dimer model and a displacement of the adsorbate during its translational motion inside cells. It was found that the taking into account of internal motions decreases the critical temperature of adsorbate layering in slit-like pores.

  5. Structure and friction of stearic acid and oleic acid films adsorbed on iron oxide surfaces in squalane.

    PubMed

    Doig, Michael; Warrens, Chris P; Camp, Philip J

    2014-01-14

    The structure and friction of fatty acid surfactant films adsorbed on iron oxide surfaces lubricated by squalane are examined using large-scale molecular dynamics simulations. The structures of stearic acid and oleic acid films under static and shear conditions, and at various surface coverages, are described in detail, and the effects of unsaturation in the tail group are highlighted. At high surface coverage, the measured properties of stearic acid and oleic acid films are seen to be very similar. At low and intermediate surface coverages, the presence of a double bond, as in oleic acid, is seen to give rise to less penetration of lubricant in to the surfactant film and less layering of the lubricant near to the film. The kinetic friction coefficient is measured as a function of shear rate within the hydrodynamic (high shear rate) lubrication regime. Lubricant penetration and layering are observed to be correlated with friction coefficient. The friction coefficient with oleic acid depends only weakly on surface coverage, while stearic acid admits more lubricant penetration, and its friction coefficient increases significantly with decreasing surface coverage. Connections between film structure and friction are discussed. PMID:24364665

  6. Rapid visualization of hydrogen positions in neutron protein crystallography structures

    SciTech Connect

    Blakeley, Matthew P.; Meilleur, Flora; Myles, Dean A A; Weiss, Kevin L; Munshi, Parthapratim; Shang-Lin, Chung

    2012-01-01

    Neutron crystallography is a powerful technique to visualize experimentally the position of light atoms, including hydrogen and its isotope deuterium. Over the last several years, structural biologists have shown an increasing interest for the technique as it uniquely complements X-ray crystallographic data by revealing the position of hydrogen/deuterium atoms in macromolecules. With this regained interest, access to macromolecule neutron crystallography beam lines is becoming a limiting step. In this report we show that rapid data collection could be a valuable alternative to long data collection time when appropriate. Comparison of perdeuterated Rubredoxin structures refined against neutron data sets collected over hours and up to five days shows that rapid neutron data collection in just 14 hours is sufficient to provide the position of 262 hydrogen positions atoms without ambiguity.

  7. Advanced fabrication techniques for hydrogen-cooled engine structures

    NASA Technical Reports Server (NTRS)

    Buchmann, O. A.; Arefian, V. V.; Warren, H. A.; Vuigner, A. A.; Pohlman, M. J.

    1985-01-01

    Described is a program for development of coolant passage geometries, material systems, and joining processes that will produce long-life hydrogen-cooled structures for scramjet applications. Tests were performed to establish basic material properties, and samples constructed and evaluated to substantiate fabrication processes and inspection techniques. Results of the study show that the basic goal of increasing the life of hydrogen-cooled structures two orders of magnitude relative to that of the Hypersonic Research Engine can be reached with available means. Estimated life is 19000 cycles for the channels and 16000 cycles for pin-fin coolant passage configurations using Nickel 201. Additional research is required to establish the fatigue characteristics of dissimilar-metal coolant passages (Nickel 201/Inconel 718) and to investigate the embrittling effects of the hydrogen coolant.

  8. Path integral Monte Carlo simulations of H{sub 2} adsorbed to lithium-doped benzene: A model for hydrogen storage materials

    SciTech Connect

    Lindoy, Lachlan P.; Kolmann, Stephen J.; D’Arcy, Jordan H.; Jordan, Meredith J. T.; Crittenden, Deborah L.

    2015-11-21

    Finite temperature quantum and anharmonic effects are studied in H{sub 2}–Li{sup +}-benzene, a model hydrogen storage material, using path integral Monte Carlo (PIMC) simulations on an interpolated potential energy surface refined over the eight intermolecular degrees of freedom based upon M05-2X/6-311+G(2df,p) density functional theory calculations. Rigid-body PIMC simulations are performed at temperatures ranging from 77 K to 150 K, producing both quantum and classical probability density histograms describing the adsorbed H{sub 2}. Quantum effects broaden the histograms with respect to their classical analogues and increase the expectation values of the radial and angular polar coordinates describing the location of the center-of-mass of the H{sub 2} molecule. The rigid-body PIMC simulations also provide estimates of the change in internal energy, ΔU{sub ads}, and enthalpy, ΔH{sub ads}, for H{sub 2} adsorption onto Li{sup +}-benzene, as a function of temperature. These estimates indicate that quantum effects are important even at room temperature and classical results should be interpreted with caution. Our results also show that anharmonicity is more important in the calculation of U and H than coupling—coupling between the intermolecular degrees of freedom becomes less important as temperature increases whereas anharmonicity becomes more important. The most anharmonic motions in H{sub 2}–Li{sup +}-benzene are the “helicopter” and “ferris wheel” H{sub 2} rotations. Treating these motions as one-dimensional free and hindered rotors, respectively, provides simple corrections to standard harmonic oscillator, rigid rotor thermochemical expressions for internal energy and enthalpy that encapsulate the majority of the anharmonicity. At 150 K, our best rigid-body PIMC estimates for ΔU{sub ads} and ΔH{sub ads} are −13.3 ± 0.1 and −14.5 ± 0.1 kJ mol{sup −1}, respectively.

  9. The stability and electronic structure of lithium adsorbed in triplet form of (5.0) carbon nanotubes and (5.0) boron nitrogen nanotubes: Density functional theory studies

    NASA Astrophysics Data System (ADS)

    Li, Ke Jing; Shao, Qing Yi; Zhang, Juan; Yao, Xin Hua

    2016-07-01

    Using density functional theory (DFT), we have investigated the stability and electronic structure of lithium (Li) adsorbed in triplet form of (5.0) carbon nanotubes (CNTs) and (5.0) boron nitrogen nanotubes (BNNTs). We have mainly found that three (5.0) tubes are covalently connected. The triplet form is an energetically stable semiconductor. Li atom can be chemically adsorbed in the triplet form of nanotubes (NTs). Meanwhile, upon the adsorption of Li, the triplet form convert into metal. Hence, the triplet form can improve reactivity and sensitivity of NTs to Li significantly.

  10. Thermal and structural tests of a hydrogen cooled panel

    NASA Technical Reports Server (NTRS)

    Richard, C. E.; Duncan, J. D.; Gellersen, E. W.; Demogenes, C.

    1972-01-01

    An experimental evaluation of the thermal and structural performance of a hydrogen-cooled panel is presented. The panel, which was of brazed Inconel 625 and Inconel 718 construction, was designed for a heat flux of 100 BTU per second-foot squared and an external surface pressure of 100 psi.

  11. The diammoniate of diborane: Crystal structure and hydrogen release

    SciTech Connect

    Bowden, Mark E.; Heldebrant, David J.; Karkamkar, Abhijeet J.; Proffen, Thomas E.; Schenter, Gregory K.; Autrey, Thomas

    2010-10-12

    [(NH3)2BH2]+[BH4]- is formed from the room temperature decomposition of NH4+BH4-, via a NH3BH3 intermediate. Its crystal structure has been determined and contains disordered BH4- ions in 2 distinct sites. Hydrogen release is similar to that from NH3BH3 but with faster kinetics.

  12. First-Principles Electronic Structure Calculations of N2H4 Adsorbed on Single-Wall Carbon Nanotubes

    NASA Astrophysics Data System (ADS)

    Yu, M.; Tian, W. Q.; Jayanthi, C. S.; Wu, S. Y.

    2008-03-01

    Recent experiments conducted by Desai et al. [1] reveal that single-wall carbon nanotube (SWCNT) networks exposed to N2H4 vapor at various pressures exhibit considerable drop in resistance with respect to the pristine sample. Experimental findings reveal: (i) n-type behavior for the adsorption of N2H4/SWCNT, and (ii) the binding of N2H4 on SWCNT as chemisorption. In the present work, we have performed first-principles electronic structure calculations [2] for the N2H4 adsorbed on the (14, 0) SWCNT, where several orientations for the N2H4 molecule were considered. Calculations for the combined system were performed using 3 unit cells with the DFT/GGA and ultra soft pseudo-potentials. Our calculations reveal: (i) the binding of N2H4 on SWCNT as physisorption, and (ii) the electronic structure of SWCNT to be practically unaltered by the adsorption of N2H4, suggesting that there will not be a dramatic drop in resistance for N2H4/SWCNT. This is in disagreement with the experimental findings. To further understand the experimental observations, we will discuss mechanisms that may alter the binding nature of N2H4 on SWCNT. [1] S. Desai, G. Sumanasekera, et al. (APS, March 2008). [2] G. Kresse and J. Furthmuller, Phys. Rev. B 54, 11169 (1996).

  13. Band structure and charge doping effects of the potassium-adsorbed FeSe /SrTiO3 system

    NASA Astrophysics Data System (ADS)

    Zheng, Fawei; Wang, Li-Li; Xue, Qi-Kun; Zhang, Ping

    2016-02-01

    We theoretically study, through combining the density functional theory and an unfolding technique, the electronic band structure and the charge doping effects for the deposition of potassium on multilayer FeSe films grown on SrTiO3 (001) surface. These results form a theoretical baseline for further detailed studies of low-temperature electronic properties and their multiway quantum engineering of FeSe thin films. We explain the Fermi-surface topology observed in experiment and formulate the amount of doped electrons as a function of atomic K coverage. We show that the atomic K deposition efficiently dopes electrons to the top layer of FeSe. Both checkerboard- and pair-checkerboard-antiferromagnetic (AFM) FeSe layers show electron pockets at the M point and no Fermi pocket at the Γ point with moderate atomic K coverage. The electron transfer from the K adsorbate to the FeSe film introduces a strong electric field, which leads to a double-Weyl-cone structure at the M point in the Brillouin zone of checkerboard-AFM FeSe. We demonstrate that with experimentally accessible heavy-electron doping, an electronlike Fermi pocket will emerge at the Γ point, which should manifest itself in modulating the high-temperature superconductivity of FeSe thin films.

  14. High-resolution electron-energy-loss spectroscopy and photoelectron-diffraction studies of the geometric structure of adsorbates on single-crystal metal surfaces

    SciTech Connect

    Rosenblatt, D.H.

    1982-11-01

    Two techniques which have made important contributions to the understanding of surface phenomena are high resolution electron energy loss spectroscopy (EELS) and photoelectron diffraction (PD). EELS is capable of directly measuring the vibrational modes of clean and adsorbate covered metal surfaces. In this work, the design, construction, and performance of a new EELS spectrometer are described. These results are discussed in terms of possible structures of the O-Cu(001) system. Recommendations for improvements in this EELS spectrometer and guidelines for future spectrometers are given. PD experiments provide accurate quantitative information about the geometry of atoms and molecules adsorbed on metal surfaces. The technique has advantages when used to study disordered overlayers, molecular overlayers, multiple site systems, and adsorbates which are weak electron scatterers. Four experiments were carried out which exploit these advantages.

  15. Thick-Film Carbon Dioxide Sensor via Anodic Adsorbate Stripping Technique and Its Structural Dependence

    PubMed Central

    Photinon, Kanokorn; Wang, Shih-Han; Liu, Chung-Chiun

    2009-01-01

    A three-electrode based CO2 sensor was fabricated using thick-film technology. The performance of this sensor was further enhanced by incorporating platinum nanoparticles onto the working electrode surface. An eight-fold increase in the signal output was obtained from the electrode with the platinum nanoparticles. The sensing output was linearly related to the CO2 presented. Stability measurements demonstrated that the decline of the active surface area and the sensitivity of the sensor were 8% and 13%, respectively, over a two week period of time. The sensor response appeared to be a structural dependence of the crystallographic orientation of platinum electrode. PMID:22399993

  16. Electronic structure of uracil-like nucleobases adsorbed on Si(001): uracil, thymine and 5-fluorouracil

    NASA Astrophysics Data System (ADS)

    Molteni, Elena; Onida, Giovanni; Cappellini, Giancarlo

    2016-04-01

    We study the electronic properties of the Si(001):Uracil, Si(001):Thymine, and Si(001):5-Fluorouracil systems, focusing on the Si dimer-bridging configuration with adsorption governed by carbonyl groups. While the overall structural and electronic properties are similar, with small differences due to chemical substitutions, much larger effects on the surface band dispersion and bandgap show up as a function of the molecular orientation with respect to the surface. An off-normal orientation of the molecular planes is favored, showing larger bandgap and lower total energy than the upright position. We also analyze the localization of gap-edge occupied and unoccupied surface states. Supplementary material in the form of one pdf file available from the Journal web page at http://dx.doi.org/10.1140/epjb/e2016-70011-1

  17. Underpotential deposition of Cu on Pt(001): Interface structure and the influence of adsorbed bromide

    NASA Astrophysics Data System (ADS)

    Lucas, C. A.; Markovic, N. M.; Ross, P. N.

    1998-05-01

    Using in situ x-ray diffraction, we studied the underpotential deposition (UPD) of copper onto a Pt(001) electrode both in pure perchloric acid and in the presence of bromide anions. In pure perchloric acid, the Cu is deposited in pseudomorphic p(1×1) islands. In the presence of bromide anions, the strong Pt-Br interaction significantly broadens the potential range of Cu UPD. We propose that Br remains in the interface region throughout the UPD process, at first in a disordered Cu-Br phase and then, at more negative potential, forming a c(2×2) closed-packed monolayer on top of the completed p(1×1) Cu monolayer. The structures are compared to those found during Cu UPD onto Pt(111), and explained in terms of the metal-halide interactions and the Pt surface atomic geometry.

  18. Electronic Structures of Clusters of Hydrogen Vacancies on Graphene

    PubMed Central

    Wu, Bi-Ru; Yang, Chih-Kai

    2015-01-01

    Hydrogen vacancies in graphane are products of incomplete hydrogenation of graphene. The missing H atoms can alter the electronic structure of graphane and therefore tune the electronic, magnetic, and optical properties of the composite. We systematically studied a variety of well-separated clusters of hydrogen vacancies in graphane, including the geometrical shapes of triangles, parallelograms, hexagons, and rectangles, by first-principles density functional calculation. The results indicate that energy levels caused by the missing H are generated in the broad band gap of pure graphane. All triangular clusters of H vacancies are magnetic, the larger the triangle the higher the magnetic moment. The defect levels introduced by the missing H in triangular and parallelogram clusters are spin-polarized and can find application in optical transition. Parallelograms and open-ended rectangles are antiferromagnetic and can be used for nanoscale registration of digital information. PMID:26468677

  19. Predicted novel hydrogen hydrate structures under pressure from first principles

    NASA Astrophysics Data System (ADS)

    Qian, Guangrui; Lyakhov, Andriy; Zhu, Qiang; Oganov, Artem; Dong, Xiao

    2014-03-01

    Gas hydrates are systems of prime importance. In particular, hydrogen hydrates are potential materials of icy satellites and comets, and may be used for hydrogen storage. We explore the H2O-H2 system at pressures in the range 0 ~ 100 GPa with ab initio variable-composition evolutionary simulations. According to our calculation and previous experiments, the H2O-H2 system undergoes a series of transformations with pressure, and adopts the known open-network clathrate structures (sII, C0), dense ``filled ice'' structures (C1, C2) and two novel hydrogen hydrate phases. One of these structures is based on the hexagonal ice framework and has the same H2O:H2 ratio (2:1) as the C0 phase at low pressures and similar enthalpy (we name this phase Ih-C0). The other newly predicted hydrate phase has a 1:2 H2O:H2 ratio and structure based on cubic ice. This phase (which we name C3) is predicted to be thermodynamically stable above 38 GPa when including van der Waals interactions and zero-point vibrational energy. This is the hydrogen-richest hydrate and this phase has the highest gravimetric densities (18 wt.%) of extractable hydrogen among all known materials. We thank the DARPA (Grants No. W31P4Q1310005 and No. W31P4Q1210008), National Science Founda- tion (EAR-1114313, DMR-1231586), AFOSR (FA9550- 13-C-0037), DOE (DE-AC02-98CH10886), CRDF Global (UKE2-7034-KV-11) for financial support. We thank Purdue University Teragrid for providing computational resources and technical support for this work (Charge No.: TG-DMR110058).

  20. Density functional studies of small Au clusters adsorbed on α-FeOOH: Structural and electronic properties

    NASA Astrophysics Data System (ADS)

    Fortunato, Leandro F.; Zubieta, Carolina E.; Fuente, Silvia A.; Belelli, Patricia G.; Ferullo, Ricardo M.

    2016-11-01

    We report a density functional theory (DFT) investigation on the interaction of tiny Aun (n = 1-5) clusters with the bare and hydroxylated (110) surfaces of goethite (α-FeOOH). Both adsorption and atom-by-atom nucleation processes were modeled. The adsorption is shown to be strong on the bare surface and takes place preferentially through the interaction of Au atoms with unsaturated surface oxygen anions, accompanied with an electronic charge transfer from the metal to the support. Au3, Au4 and Au5 planar structures resulted to be particularly stable due to polarization effects; indeed, Coulombic repulsion between basal Au atoms and surface oxygen anions promotes the displacement of the electronic density toward terminal Au atoms producing a Au+δ(basal)/Au-δ(terminal) polarization. On the hydroxylated surface, Au clusters adsorb more weakly with respect to the bare surface, mainly through monocoordinated surface hydroxyl groups and tricoordinated oxygen ions. Concerning the nucleation mechanism, while on the hydroxylated surface the nucleation energy is governed by the spin of the interacting systems, on the bare surface polarization effects seems to play a predominant role.

  1. Influence of ionic strength changes on the structure of pre-adsorbed salivary films. A response of a natural multi-component layer.

    PubMed

    Macakova, Lubica; Yakubov, Gleb E; Plunkett, Mark A; Stokes, Jason R

    2010-05-01

    Salivary films coating oral surfaces are critically important for oral health. This study focuses on determining the underlying nature of this adsorbed film and how it responds to departures from physiological conditions due to changes in ionic strength. Under physiological conditions, it is found that pre-adsorbed in vitro salivary film on hydrophobic surfaces is present as a highly hydrated viscoelastic layer. We follow the evolution of this film in terms of its effective thickness, hydration and viscoelastic properties, as well as adsorbed mass of proteins, using complementary surface characterisation methods: a Surface Plasmon Resonance (SPR) and a Quartz Crystal Microbalance with Dissipation Monitoring (QCM-D). Our results support a heterogeneous model for the structure of the salivary film with an inner dense anchoring layer and an outer highly extended hydrated layer. Further swelling of the film was observed upon decreasing the salt concentration down to 1mM NaCl. However, upon exposure to deionised water, a collapse of the film occurs that was associated with the loss of water contained within the adsorbed layer. We suggest that the collapse in deionised water is driven by an onset of electrostatic attraction between different parts of the multi-component salivary film. It is anticipated that such changes could also occur when the oral cavity is exposed to food, beverage, oral care and pharmaceutical formulations where drastic changes to the structural integrity of the film is likely to have implications on oral health, sensory perception and product performance. PMID:20133111

  2. Structural changes of filled ice Ic structure for hydrogen hydrate under high pressure.

    PubMed

    Machida, Shin-ichi; Hirai, Hisako; Kawamura, Taro; Yamamoto, Yoshitaka; Yagi, Takehiko

    2008-12-14

    High-pressure experiments of hydrogen hydrate, filled ice Ic structure, were performed using a diamond-anvil cell in the pressure range of 0.1-80.3 GPa at room temperature. In situ x-ray diffractometry (XRD) revealed that structural changes took place at approximately 35-40 and 55-60 GPa, and that the high-pressure phase of hydrogen hydrate survived up to at least 80.3 GPa. Raman spectroscopy showed that the changes in vibrational mode for the hydrogen molecules in hydrogen hydrate occurred at around 40 and 60 GPa, and these results were consistent with those of the XRD. At about 40 GPa, the intermolecular distance of host water molecules consisting the framework attained the critical distance of symmetrization of the hydrogen bond for water molecules, which suggested that symmetrization of the hydrogen bond occurred at around 40 GPa. The symmetrization might introduce some structural change in the filled ice Ic structure. In addition, the existence of the high-pressure phase above 55-60 GPa implies that a denser structure than that of filled ice Ic may exist in hydrogen hydrate. PMID:19071926

  3. Hydrogenated graphene and hydrogenated silicene: computational insights.

    PubMed

    Nguyen, Manh-Thuong; Phong, Pham Nam; Tuyen, Nguyen Duc

    2015-06-01

    Density functional calculations are performed to study the energetic, structural, and electronic properties of graphene and silicene functionalized with hydrogen. Our calculations predict that H atoms bind much more strongly to silicene than to graphene. The adsorbed H atoms tend to cooperatively stabilize each other leading to a two-dimensional nucleation and growth mechanism. The different structural and electronic modifications induced by H in fully functionalized graphene and silicene (known as graphane and silicane) are also explained. Finally, the electronic properties of defective graphane with multiple hydrogen vacancies are investigated. Engineering the vacancies in graphane offers a way to modify the electronic properties of this material. PMID:25820304

  4. Influence of Subsurface Hydrogen on the Structural Properties of Graphene Templates Grown on Ru(0001)

    NASA Astrophysics Data System (ADS)

    Grady, Maxwell; Diaconescu, Bogdan; Valovcin, Darren; Hagelberg, Frank; Pohl, Karsten

    2014-03-01

    Graphene has aroused tremendous interest due to its remarkable electronic and mechanical properties. Graphene's optical properties and conductance make it an ideal candidate for use in nanoelectronic devices and organic photoelectric devices. We will present a STM/LEED/DFT study of the single layer graphene on Ru(0001) system grown via a novel growth mechanism that co-adsorbs atomic hydrogen and carbon vapor to the ruthenium surface while simultaneously segregating carbon from the crystal bulk to the surface. Structural studies show a wide array of moire superlattices sizes ranging from 0.9 to 3.0 nm. DFT calculations help explain the appearance of these graphene reconstructions driven by the H presence at the Ru interface. A LEED I(V) study guided by DFT calculations will accompany the STM investigation to provide insight into the graphene layer thickness. The structural polymorphism displayed by this system is of interest for the study of directed self-assembly. Control over moire superstructure size can aid in future work using graphene as a nanotemplate for self-assembled growth of nanoelectronic and organic photovoltaic devices based on pentacenes and fullerenes. Finally the impact of the structural changes on the electronic properties of the system will be studied. Supported by NSF NSEC-425826 and DMR-1006863.

  5. Enhanced Photovoltaic Properties of Potassium-Adsorbed Titania Nanotubes

    SciTech Connect

    Richter, C.; Jaye, C; Fischer, D; Lewis, L; Willey, R; Menon, L

    2009-01-01

    It is demonstrated that vertically-aligned titania nanotube planar arrays fabricated by electrochemical anodization using standard potassium-containing electrolytes invariably contain a significant amount of surface-adsorbed potassium ions, hitherto undetected, that affect the titania photoelectrochemical or PEC performance. Synchrotron-based near edge X-ray absorption fine structure (NEXAFS) spectroscopy reveals the strong ionic nature of surface potassium-titania bonds that alters the PEC performance over that of pure titania nanotubes through reduction of the external electrical bias needed to produce hydrogen at maximum efficiency. This result implies that the external electrical energy input required per liter of solar hydrogen produced with potassium-adsorbed titania nanotubes may be reduced. Tailoring the potassium content may thus be an alternative means to fine-tune the photoelectrochemical response of TiO2 nanotube-based PEC electrodes.

  6. Structure and hydrogen bonding in ortho-hydroxy Ketimines

    NASA Astrophysics Data System (ADS)

    Filarowski, A.; Koll, A.; Głowiak, T.

    2003-01-01

    Two ortho-hydroxy Ketimines (2,2'-dihydroxybenzophenone- N-methyl-imine ( 1) and 2,2'-dihydroxy-4-methoxy-benzophenone- N-methyl-imine ( 2)) were synthesized with the hydrogen atom replaced in the azomethine group by the ortho-hydroxyphenyl substituent. The crystal structures were determined, which contain two types of hydrogen bonds; the intra-molecular O⋯N ( d(ON)=2.540 Å, d(ON)=2.502 Å for compound 1, d(ON)=2.559 Å for compound 2, and intermolecular O⋯O ( d(OO)=2.632 Å, d(OO)=2.582 Å for compound 1 and d(OO)=2.581 Å for compound 2. FT-IR spectra of compounds 1 and 2 in solid state as function of temperature were recorded. Relation between the intra-molecular and intermolecular hydrogen bonds was discussed. Influence of methoxy group substituted in phenol ring on the hydrogen bond properties has been investigated.

  7. Lightweight Intermetallics with Laves Structures as Potential Hydrogen Storage Materials

    NASA Astrophysics Data System (ADS)

    Billet, Beau Austin

    Hydrogen storage was identified by the US Department of Energy as a "grand challenge" for the implementation of hydrogen-powered fuel cell vehicles for reduced CO2 emissions from transportation vehicles. None of the hydrogen storage options currently developed can satisfy the high gravimetric, volumetric and system design requirements. Intermetallic compounds with Laves structures in the formula of AB2 have long been known to store hydrogen in their interstitial sites to serve as reversible hydrogen storage materials (A and B are metallic elements). They have the potential to be hydrided to a maximum of ~ AB2H6 due to the impeding H-H interactions at neighboring interstitial sites. To achieve the highest weight percent of hydrogen storage in AB2H6, the lowest combined atomic weight of AB2 is required. The CaLi2 compound is the lightest known Laves phase, but it could not maintain its Laves structure when it was hydrided. Existing work of Akiba's group showed that a ternary Laves phase CaLi1.8Mg0.2 could be hydrided to form a hydrogenated Laves phase, but the absorbed hydrogen could not be released for reversible storage. Substitutions (Ca,X)Li1.8Mg0.2 are explored in the present study to see whether heavier elements [X = Sr, Ba and Ce] in small quantities can make the lightweight Laves compounds reversibly store hydrogen. Induction melting was successful in obtaining the desired Laves phases. The base system, CaLi1.8Mg0.2, formed a single phase, consistent with the literature result. Both Ca0.9Ba0.1Li 1.8Mg0.2 and Ca0.9Ce0.1Li1.8Mg 0.2 also formed a single-phase C14 Laves, whereas both Ca0.9Sr 0.1Li1.8Mg0.2 and Ca0.8Sr0.2Li 1.8Mg0.2 formed two seperature Laves phases with the same crystal structure, indicating a phase separation. The Ca0.8Ba 0.2Li1.8Mg0.2 composition completely lost the Laves-phase structure, forming CaLi2, CaMg2, BaLi 4 and Ca. All compounds tested at temperatures from 25 °C to 150 °C show the characteristic "plateau" behavior in the pressure

  8. Facile Isolation of Adsorbent-Free Long and Highly-Pure Chirality-Selected Semiconducting Single-Walled Carbon Nanotubes Using A Hydrogen-bonding Supramolecular Polymer

    PubMed Central

    Toshimitsu, Fumiyuki; Nakashima, Naotoshi

    2015-01-01

    The ideal form of semiconducting-single-walled carbon nanotubes (sem-SWNTs) for science and technology is long, defect-free, chirality pure and chemically pure isolated narrow diameter tubes. While various techniques to solubilize and purify sem-SWNTs have been developed, many of them targeted only the chiral- or chemically-purity while sacrificing the sem-SWNT intrinsic structural identities by applying strong ultra-sonication and/or chemical modifications. Toward the ultimate purification of the sem-SWNTs, here we report a mild-conditioned extraction of the sem-SWNTs using removable supramolecular hydrogen-bonding polymers (HBPs) that are composed of dicarboxylic- or diaminopyridyl-fluorenes with ~70%-(8,6)SWNT selective extraction. Replacing conventional strong sonication techniques by a simple shaking using HPBs was found to provide long sem-SWNTs (>2.0 μm) with a very high D/G ratio, which was determined by atomic force microscopy observations. The HBPs were readily removed from the nanotube surfaces by an outer stimulus, such as a change in the solvent polarities, to provide chemically pure (8,6)-enriched sem-SWNTs. We also describe molecular mechanics calculations to propose possible structures for the HBP-wrapped sem-SWNTs, furthermore, the mechanism of the chiral selectivity for the sorted sem-SWNTs is well explained by the relationship between the molecular surface area and mass of the HBP/SWNT composites. PMID:26658356

  9. Facile Isolation of Adsorbent-Free Long and Highly-Pure Chirality-Selected Semiconducting Single-Walled Carbon Nanotubes Using A Hydrogen-bonding Supramolecular Polymer

    NASA Astrophysics Data System (ADS)

    Toshimitsu, Fumiyuki; Nakashima, Naotoshi

    2015-12-01

    The ideal form of semiconducting-single-walled carbon nanotubes (sem-SWNTs) for science and technology is long, defect-free, chirality pure and chemically pure isolated narrow diameter tubes. While various techniques to solubilize and purify sem-SWNTs have been developed, many of them targeted only the chiral- or chemically-purity while sacrificing the sem-SWNT intrinsic structural identities by applying strong ultra-sonication and/or chemical modifications. Toward the ultimate purification of the sem-SWNTs, here we report a mild-conditioned extraction of the sem-SWNTs using removable supramolecular hydrogen-bonding polymers (HBPs) that are composed of dicarboxylic- or diaminopyridyl-fluorenes with ~70%-(8,6)SWNT selective extraction. Replacing conventional strong sonication techniques by a simple shaking using HPBs was found to provide long sem-SWNTs (>2.0 μm) with a very high D/G ratio, which was determined by atomic force microscopy observations. The HBPs were readily removed from the nanotube surfaces by an outer stimulus, such as a change in the solvent polarities, to provide chemically pure (8,6)-enriched sem-SWNTs. We also describe molecular mechanics calculations to propose possible structures for the HBP-wrapped sem-SWNTs, furthermore, the mechanism of the chiral selectivity for the sorted sem-SWNTs is well explained by the relationship between the molecular surface area and mass of the HBP/SWNT composites.

  10. Facile Isolation of Adsorbent-Free Long and Highly-Pure Chirality-Selected Semiconducting Single-Walled Carbon Nanotubes Using A Hydrogen-bonding Supramolecular Polymer.

    PubMed

    Toshimitsu, Fumiyuki; Nakashima, Naotoshi

    2015-01-01

    The ideal form of semiconducting-single-walled carbon nanotubes (sem-SWNTs) for science and technology is long, defect-free, chirality pure and chemically pure isolated narrow diameter tubes. While various techniques to solubilize and purify sem-SWNTs have been developed, many of them targeted only the chiral- or chemically-purity while sacrificing the sem-SWNT intrinsic structural identities by applying strong ultra-sonication and/or chemical modifications. Toward the ultimate purification of the sem-SWNTs, here we report a mild-conditioned extraction of the sem-SWNTs using removable supramolecular hydrogen-bonding polymers (HBPs) that are composed of dicarboxylic- or diaminopyridyl-fluorenes with ~70%-(8,6)SWNT selective extraction. Replacing conventional strong sonication techniques by a simple shaking using HPBs was found to provide long sem-SWNTs (>2.0 μm) with a very high D/G ratio, which was determined by atomic force microscopy observations. The HBPs were readily removed from the nanotube surfaces by an outer stimulus, such as a change in the solvent polarities, to provide chemically pure (8,6)-enriched sem-SWNTs. We also describe molecular mechanics calculations to propose possible structures for the HBP-wrapped sem-SWNTs, furthermore, the mechanism of the chiral selectivity for the sorted sem-SWNTs is well explained by the relationship between the molecular surface area and mass of the HBP/SWNT composites. PMID:26658356

  11. Hydrogenation induced structure and property changes in GdGa

    NASA Astrophysics Data System (ADS)

    Nedumkandathil, Reji; Kranak, Verina F.; Johansson, Robert; Ångström, Jonas; Balmes, Oliver; Andersson, Mikael S.; Nordblad, Per; Scheicher, Ralph H.; Sahlberg, Martin; Häussermann, Ulrich

    2016-07-01

    Hydrides GdGaHx were obtained by exposing the Zintl phase GdGa with the CrB structure to a hydrogen atmosphere at pressures from 1.5 to 50 bar and temperatures from 50 to 500 °C. Structural analysis by powder X-ray diffraction suggests that conditions with hydrogen pressures in a range between 15 and 50 bar and temperatures below 500 °C afford a uniform hydride phase with the NdGaH1.66 structure (Cmcm, a=3.9867(7) Å, b=12.024(2) Å, c=4.1009(6) Å) which hosts H in two distinct positions, H1 and H2. H1 is coordinated in a tetrahedral fashion by Gd atoms, whereas H2 atoms are inserted between Ga atoms. The assignment of the NdGaH1.66 structure is corroborated by first principles DFT calculations. Modeling of phase and structure stability as a function of composition resulted in excellent agreement with experimental lattice parameters when x=1.66 and revealed the presence of five-atom moieties Ga-H2-Ga-H2-Ga in GdGaH1.66. From in situ powder X-ray diffraction using synchrotron radiation it was established that hydrogenation at temperatures above 200 °C affords a hydride with x≈1.3, which is stable up to 500 °C, and that additional H absorption, yielding GdGaH1.66, takes place at lower temperatures. Consequently, GdGaH1.66 desorbs H above T=200 °C. Without the presence of hydrogen, hydrides GdGaHx decompose at temperatures above 300 °C into GdH2 and an unidentified Gd-Ga intermetallics. Thus the hydrogenation of GdGa is not reversible. From magnetic measurements the Curie-Weiss constant and effective magnetic moment of GdGaH1.66 were obtained. The former indicates antiferromagnetic interactions, the latter attains a value of ~8 μB which is typical for compounds containing Gd3+ions.

  12. Morphology and structure of photosensitive dye J-aggregates adsorbed on AgBr microcrystals grown in gelatin.

    PubMed

    Saijo, H; Shiojiri, M

    1998-07-15

    Though the cyanine dye J-aggregates carry the role to sense the exposing light in the silver halide photographic system, little research on the morphology of the aggregates in adsorption has been made with modern surface analytical methods. In this paper, we describe the size, epitaxy, multi-layered array formation, nucleation and preferential adsorption, and irregular distribution of population between particles and the segregation on a particle, of J-aggregates adsorbed on AgBr grown in gelatin. We employed cathodoluminescence microscopy, low energy high resolution scanning electron microscopy, and atomic force microscopy. Dye molecules aggregate together near the surface of AgBr and adsorb on the surface. The growth of adsorbed aggregates is controlled by the diffusion of dye molecules from the surrounding solution. The population of J-aggregates adsorbed on an AgBr particle varies from almost none to full coverage. Each aggregate is about (20-30) x (30-50) nm in size and is 2.1 nm thick for thiacarbocyanine with sodium ion, 1.04 nm for thiacarbocyanine with tosyl ion, and 0.5 nm for an oxacarbocyanine. The aggregates connect their longer edges to each other to form arrays, and the arrays build up multi-layered stacks. The arrays align parallel and segregate to form terraces. The longer edges of J-aggregates align along [210] on AgBr (100) or [632] on AgBr (111). PMID:9728883

  13. Hydrogen adsorption on functionalized nanoporous activated carbons.

    PubMed

    Zhao, X B; Xiao, B; Fletcher, A J; Thomas, K M

    2005-05-12

    There is considerable interest in hydrogen adsorption on carbon nanotubes and porous carbons as a method of storage for transport and related energy applications. This investigation has involved a systematic investigation of the role of functional groups and porous structure characteristics in determining the hydrogen adsorption characteristics of porous carbons. Suites of carbons were prepared with a wide range of nitrogen and oxygen contents and types of functional groups to investigate their effect on hydrogen adsorption. The porous structures of the carbons were characterized by nitrogen (77 K) and carbon dioxide (273 K) adsorption methods. Hydrogen adsorption isotherms were studied at 77 K and pressure up to 100 kPa. All the isotherms were Type I in the IUPAC classification scheme. Hydrogen isobars indicated that the adsorption of hydrogen is very temperature dependent with little or no hydrogen adsorption above 195 K. The isosteric enthalpies of adsorption at zero surface coverage were obtained using a virial equation, while the values at various surface coverages were obtained from the van't Hoff isochore. The values were in the range 3.9-5.2 kJ mol(-1) for the carbons studied. The thermodynamics of the adsorption process are discussed in relation to temperature limitations for hydrogen storage applications. The maximum amounts of hydrogen adsorbed correlated with the micropore volume obtained from extrapolation of the Dubinin-Radushkevich equation for carbon dioxide adsorption. Functional groups have a small detrimental effect on hydrogen adsorption, and this is related to decreased adsorbate-adsorbent and increased adsorbate-adsorbate interactions. PMID:16852056

  14. Vibrational Studies of Adsorbate-Induced Reconstruction on Molybdenum Surfaces.

    NASA Astrophysics Data System (ADS)

    Lopinski, Gregory Peter

    Adsorbate-induced rearrangement of the substrate structure strongly modifies the adsorbate-substrate and adsorbate-adsorbate interactions, leading to the complex behavior observed in many chemisorption systems. In this thesis the H/Mo(211), O/Mo(211) and Na/Mo(100) systems have been studied using high resolution electron energy loss spectroscopy (HREELS) to observe vibrations of the adsorbed atoms. The vibrational data is correlated with observations of the long-range order probed by LEED as well as the work function changes induced by adsorption. Adsorbate -induced substrate reconstruction plays an important role in all three of these systems. Studies of the coadsorption systems O+H/Mo(211) and Na+O/Mo(100) indicate how these effects can influence interactions between adsorbates. For H/Mo(211), above 1ML a (1 x 1) to (1 x 2) transition is observed and attributed to modification of the substrate periodicity. Below 1ML, H atoms are bridge bonded and induce local distortions of the substrate. The transition to the (1 x 2) phase involves the ordering of these displacements and occupation of three-fold sites partially populated by conversion of the bridge bonded species. This conversion accounts for the sawtooth-like coverage dependence of the work function. The structural model proposed for this system is also supported by the desorption parameters and partial molar entropy extracted from adsorption isobars. Oxygen adsorption on Mo(211) involves the occupation of multiple binding sites, with both the long-range order and the local geometry of the adsorbate phases strongly temperature dependent. Coadsorption of low coverages of oxygen and hydrogen leads to segregation of the two adsorbates which can be understood in terms of a substrate-mediated repulsive interaction between O and H. For Na/Mo(100), the frequency of the Na-Mo symmetric stretch mode does not shift with coverage although the mode intensity is strongly coverage dependent. The absence of a frequency shift

  15. Hydrogen bonding, structure, and dynamics of benzonitrile-water

    NASA Astrophysics Data System (ADS)

    Melandri, Sonia; Consalvo, Daniela; Caminati, Walther; Favero, Paolo G.

    1999-09-01

    Rotational transitions with high quantum numbers J and K of the 1:1 complex of benzonitrile with H2O and D2O have been investigated in the frequency range 60-78 GHz with the free jet absorption microwave technique to get detailed information on the unusual hydrogen bond and on the dynamics of the large amplitude motions of the water moiety. With respect to previous microwave studies [V. Storm, D. Consalvo, and H. Dreizler, Z. Naturforsch. A 52, 293 (1997); R. M. Helm, H.-P. Vogel, H. J. Neusser, V. Storm, D. Consalvo, and H. Dreizler, 52, 655 (1997); V. Storm, H. Dreizler, and D. Consalvo, Chem. Phys. 239, 109 (1998)] the position of the water oxygen has been confirmed and the planar configuration of the complex has been determined. The distance of the oxygen atom to the ortho hydrogen is 2.48 Å, the angle to the ortho C-H bond is 144° and the angle between the free hydrogen atom of water with the same C-H bond is 164°. A coupled analysis of the 0+ and 0- states observed for the normal species was performed and the experimental data were reproduced by a flexible model which allowed the determination of the barrier to internal rotation of water [V2=287(20) cm-1] and the structural relaxation associated with the dynamic process.

  16. Intramolecular Hydrogen Bonding in Benzoxazines: When Structural Design Becomes Functional.

    PubMed

    Froimowicz, Pablo; Zhang, Kan; Ishida, Hatsuo

    2016-02-18

    The future evolution of benzoxazines and polybenzoxazines as advanced molecular, structural, functional, engineering, and newly commercial materials depends to a great extent on a deeper and more fundamental understanding at the molecular level. In this contribution, the field of benzoxazines is briefly introduced along with a more detailed review of ortho-amide-functional benzoxazines, which are the main subjects of this article. Provided in this article are the detailed and solid scientific evidences of intramolecular five-membered-ring hydrogen bonding, which is supposed to be responsible for the unique and characteristic features exhibited by this ever-growing family of ortho-functionalized benzoxazines. One-dimensional (1D) (1)H NMR spectroscopy was used to study various concentrations of benzoxazines in various solvents with different hydrogen-bonding capability and at various temperatures to investigate in detail the nature of hydrogen bonding in both ortho-amide-functionalized benzoxazine and its para counterpart. These materials were further investigated by two-dimensional (2D) (1)H-(1)H nuclear Overhauser effect spectroscopy (NOESY) to verify and support the conclusions derived during the 1D (1)H NMR experiments. Only highly purified single-crystal benzoxazine samples have been used for this study to avoid additional interactions caused by any impurities. PMID:26797690

  17. Structure sensitive adsorption of hydrogen on ruthenium and ruthenium-silver catalysts supported on silica

    SciTech Connect

    Kumar, N.

    1999-02-12

    Supported metal catalysts typically consist of particles with sizes less than 10 nm, and because of the small crystallite size, low coordination number sites (edges and corners) represent a significant fraction of all surface sites. Furthermore, it has been demonstrated that adsorption rates can be much greater at these low coordination sites than on basal plane sites. What has not been generally appreciated, however, is that preferential adsorption at edge and corner sites may explain the mechanism by which a promoter, or the addition of a second metal to form a bimetallic, can alter the selectivity and rate of reaction. For example, the measurements of hydrogen adsorption onto supported Ru-Ag catalysts show marked decreases in the amount of hydrogen adsorbed relative to the amount adsorbed on Ru catalysts. Although it is known that Ag does not dissociatively adsorb hydrogen, this decrease cannot be explained by a simple one-to-one site blocking mechanism unless Ag preferentially populates edges and corners, thereby reducing the number of Ru edge sites. Indeed, Monte Carlo simulations of Ru-Group IB metal catalysts predict that Group IB metal atoms preferentially populate corner and edge sites of ruthenium crystals. This evidence, taken together, suggests that adsorption occurs preferentially at Ru corner and edge sites, which act as portals onto basal planes. A model based on this portal theory for hydrogen adsorption onto supported ruthenium bimetallic catalysts has been developed using a rate equation approach. Specifically, the model accounts for the following features: (1) preferential adsorption through portals, (2) basal plane site-energy multiplicity, and (3) hydrogen spillover onto the support. A comparison of model predictions with experiment is presented for different concentration of Ag in Ru-Ag catalysts. The portal model of hydrogen adsorption can explain the observed decreased in the amount of hydrogen adsorbed on Ru-Ag catalysts. The model can be

  18. Structure and Reactions of Carbon and Hydrogen on Ru(0001): A Scanning Tunneling Microscopy Study

    SciTech Connect

    Shimizu, Tomoko K.; Mugarza, Aitor; Cerda, Jorge; Salmeron, Miquel

    2008-09-09

    The interaction between carbon and hydrogen atoms on a Ru(0001) surface was studied using scanning tunneling microscopy (STM), Density Functional Theory (DFT) and STM image calculations. Formation of CH species by reaction between adsorbed H and C was observed to occur readily at 100 K. When the coverage of H increased new complexes of the form CH+nH (n = 1, 2 and 3) were observed. These complexes, never observed before, might be precursors for further hydrogenation reactions. DFT analysis reveals that a considerable energy barrier exists for the CH+H {yields} CH{sub 2} reaction.

  19. Electronic structure of hydrogenated diamond: Microscopical insight into surface conductivity

    NASA Astrophysics Data System (ADS)

    Iacobucci, S.; Alippi, Paola; Calvani, P.; Girolami, M.; Offi, F.; Petaccia, L.; Trucchi, D. M.

    2016-07-01

    We have correlated the surface conductivity of hydrogen-terminated diamond to the electronic structure in the Fermi region. Significant density of electronic states (DOS) in proximity of the Fermi edge has been measured by photoelectron spectroscopy (PES) on surfaces exposed to air, corresponding to a p -type electric conductive regime, while upon annealing a depletion of the DOS has been achieved, resembling the diamond insulating state. The surface and subsurface electronic structure has been determined, exploiting the different probing depths of PES applied in a photon energy range between 7 and 31 eV. Ab initio density functional calculations including surface charge depletion and band-bending effects favorably compare with electronic states measured by angular-resolved photoelectron spectroscopy. Such states are organized in the energy-momentum space in a twofold structure: one, bulk-derived, band disperses in the Γ -X direction with an average hole effective mass of (0.43 ±0.02 ) m0 , where m0 is the bare electron mass; a second flatter band, with an effective mass of (2.2 ±0.9 ) m0 , proves that a hole gas confined in the topmost layers is responsible for the conductivity of the (2 ×1 ) hydrogen-terminated diamond (100 ) surface.

  20. Molecular-dynamics study of structure II hydrogen clathrates.

    PubMed

    Alavi, Saman; Ripmeester, J A; Klug, D D

    2005-07-01

    Molecular-dynamics simulations are used to study the stability of structure II hydrogen clathrates with different H2 guest occupancies. Simulations are done at pressures of 2.5 kbars and 1.013 bars and for temperatures ranging from 100 to 250 K. For a structure II unit cell with 136 water molecules, H2 guest molecule occupancies of 0-64 are studied with uniform occupancies among each type of cage. The simulations show that at 100 K and 2.5 kbars, the most stable configurations have single occupancy in the small cages and quadruple occupancy in the large cages. The optimum occupancy for the large cages decreases as the temperature is raised. Double occupancy in the small cages increases the energy of the structures and causes tetragonal distortion in the unit cell. The spatial distribution of the hydrogen guest molecules in the cages is determined by studying the guest-water and guest-guest radial distribution functions at various temperatures. PMID:16050759

  1. Light-induced metastable structural changes in hydrogenated amorphous silicon

    SciTech Connect

    Fritzsche, H.

    1996-09-01

    Light-induced defects (LID) in hydrogenated amorphous silicon (a-Si:H) and its alloys limit the ultimate efficiency of solar panels made with these materials. This paper reviews a variety of attempts to find the origin of and to eliminate the processes that give rise to LIDs. These attempts include novel deposition processes and the reduction of impurities. Material improvements achieved over the past decade are associated more with the material`s microstructure than with eliminating LIDs. We conclude that metastable LIDs are a natural by-product of structural changes which are generally associated with non-radiative electron-hole recombination in amorphous semiconductors.

  2. Comparison of adsorbents for H2S and D4 removal for biogas conversion in a solid oxide fuel cell.

    PubMed

    Sigot, Léa; Ducom, Gaëlle; Benadda, Belkacem; Labouré, Claire

    2016-01-01

    Biogas contains trace compounds detrimental for solid oxide fuel cell (SOFC) application, especially sulphur-containing compounds and volatile organic silicon compounds (VOSiCs). It is therefore necessary to remove these impurities from the biogas for fuelling an SOFC. In this paper, dynamic lab-scale adsorption tests were performed on synthetic polluted gas to evaluate the performance of a polishing treatment to remove hydrogen sulphide (H2S - sulphur compound) and octamethylcyclotetrasiloxane (D4 - VOSiC). Three kinds of adsorbents were tested: an activated carbon, a silica gel (SG) and a zeolite (Z). Z proved to be the best adsorbent for H2S removal, with an adsorbed quantity higher than [Formula: see text] at the SOFC tolerance limit. However, as concerns D4 removal, SG was the most efficient adsorbent, with an adsorbed quantity of about 184 mgD4/gSG at the SOFC tolerance limit. These results could not be explained by structural characteristics of the adsorbents, but they were partly explained by chemical interactions between the adsorbate and the adsorbent. In these experiments, internal diffusion was the controlling step, Knudsen diffusion being predominant to molecular diffusion. As Z was also a good adsorbent for D4 removal, competition phenomena were investigated with Z for the simultaneous removal of H2S and D4. It was shown that H2S retention was dramatically decreased in the presence of D4, probably due to D4 polymerization resulting in pore blocking. PMID:26183696

  3. Enhanced hydrogenation activity and diastereomeric interactions of methyl pyruvate co-adsorbed with R-1-(1-naphthyl)ethylamine on Pd(111)

    NASA Astrophysics Data System (ADS)

    Mahapatra, Mausumi; Burkholder, Luke; Garvey, Michael; Bai, Yun; Saldin, Dilano K.; Tysoe, Wilfred T.

    2016-08-01

    Unmodified racemic sites on heterogeneous chiral catalysts reduce their overall enantioselectivity, but this effect is mitigated in the Orito reaction (methyl pyruvate (MP) hydrogenation to methyl lactate) by an increased hydrogenation reactivity. Here, this effect is explored on a R-1-(1-naphthyl)ethylamine (NEA)-modified Pd(111) model catalyst where temperature-programmed desorption experiments reveal that NEA accelerates the rates of both MP hydrogenation and H/D exchange. NEA+MP docking complexes are imaged using scanning tunnelling microscopy supplemented by density functional theory calculations to allow the most stable docking complexes to be identified. The results show that diastereomeric interactions between NEA and MP occur predominantly by binding of the C=C of the enol tautomer of MP to the surface, while simultaneously optimizing C=O....H2N hydrogen-bonding interactions. The combination of chiral-NEA driven diastereomeric docking with a tautomeric preference enhances the hydrogenation activity since C=C bonds hydrogenate more easily than C=O bonds thus providing a rationale for the catalytic observations.

  4. Enhanced hydrogenation activity and diastereomeric interactions of methyl pyruvate co-adsorbed with R-1-(1-naphthyl)ethylamine on Pd(111).

    PubMed

    Mahapatra, Mausumi; Burkholder, Luke; Garvey, Michael; Bai, Yun; Saldin, Dilano K; Tysoe, Wilfred T

    2016-01-01

    Unmodified racemic sites on heterogeneous chiral catalysts reduce their overall enantioselectivity, but this effect is mitigated in the Orito reaction (methyl pyruvate (MP) hydrogenation to methyl lactate) by an increased hydrogenation reactivity. Here, this effect is explored on a R-1-(1-naphthyl)ethylamine (NEA)-modified Pd(111) model catalyst where temperature-programmed desorption experiments reveal that NEA accelerates the rates of both MP hydrogenation and H/D exchange. NEA+MP docking complexes are imaged using scanning tunnelling microscopy supplemented by density functional theory calculations to allow the most stable docking complexes to be identified. The results show that diastereomeric interactions between NEA and MP occur predominantly by binding of the C=C of the enol tautomer of MP to the surface, while simultaneously optimizing C=O····H2N hydrogen-bonding interactions. The combination of chiral-NEA driven diastereomeric docking with a tautomeric preference enhances the hydrogenation activity since C=C bonds hydrogenate more easily than C=O bonds thus providing a rationale for the catalytic observations. PMID:27488075

  5. Enhanced hydrogenation activity and diastereomeric interactions of methyl pyruvate co-adsorbed with R-1-(1-naphthyl)ethylamine on Pd(111)

    PubMed Central

    Mahapatra, Mausumi; Burkholder, Luke; Garvey, Michael; Bai, Yun; Saldin, Dilano K.; Tysoe, Wilfred T.

    2016-01-01

    Unmodified racemic sites on heterogeneous chiral catalysts reduce their overall enantioselectivity, but this effect is mitigated in the Orito reaction (methyl pyruvate (MP) hydrogenation to methyl lactate) by an increased hydrogenation reactivity. Here, this effect is explored on a R-1-(1-naphthyl)ethylamine (NEA)-modified Pd(111) model catalyst where temperature-programmed desorption experiments reveal that NEA accelerates the rates of both MP hydrogenation and H/D exchange. NEA+MP docking complexes are imaged using scanning tunnelling microscopy supplemented by density functional theory calculations to allow the most stable docking complexes to be identified. The results show that diastereomeric interactions between NEA and MP occur predominantly by binding of the C=C of the enol tautomer of MP to the surface, while simultaneously optimizing C=O····H2N hydrogen-bonding interactions. The combination of chiral-NEA driven diastereomeric docking with a tautomeric preference enhances the hydrogenation activity since C=C bonds hydrogenate more easily than C=O bonds thus providing a rationale for the catalytic observations. PMID:27488075

  6. Quasiparticle excitations of adsorbates on doped graphene

    NASA Astrophysics Data System (ADS)

    Lischner, Johannes; Wickenburg, Sebastian; Wong, Dillon; Karrasch, Christoph; Wang, Yang; Lu, Jiong; Omrani, Arash A.; Brar, Victor; Tsai, Hsin-Zon; Wu, Qiong; Corsetti, Fabiano; Mostofi, Arash; Kawakami, Roland K.; Moore, Joel; Zettl, Alex; Louie, Steven G.; Crommie, Mike

    Adsorbed atoms and molecules can modify the electronic structure of graphene, but in turn it is also possible to control the properties of adsorbates via the graphene substrate. In my talk, I will discuss the electronic structure of F4-TCNQ molecules on doped graphene and present a first-principles based theory of quasiparticle excitations that captures the interplay of doping-dependent image charge interactions between substrate and adsorbate and electron-electron interaction effects on the molecule. The resulting doping-dependent quasiparticle energies will be compared to experimental scanning tunnelling spectra. Finally, I will also discuss the effects of charged adsorbates on the electronic structure of doped graphene.

  7. First-Principles Study of Electronic Structure and Hydrogen Adsorption of 3d Transition Metal Exposed Paddle Wheel Frameworks

    SciTech Connect

    Bak, J. H.; Le, V. D.; Kang, J.; Wei, S. H.; Kim, Y. H.

    2012-04-05

    Open-site paddle wheels, comprised of two transition metals bridged with four carboxylate ions, have been widely used for constructing metal-organic frameworks with large surface area and high binding energy sites. Using first-principles density functional theory calculations, we have investigated atomic and electronic structures of various 3d transition metal paddle wheels before and after metal exposure and their hydrogen adsorption properties at open metal sites. Notably, the hydrogen adsorption is impeded by covalent metal-metal bonds in early transition metal paddle wheels from Sc to Cr and by the strong ferromagnetic coupling of diatomic Mn and Fe in the paddle wheel configurations. A significantly enhanced H{sub 2} adsorption is predicted in the nonmagnetic Co{sub 2} and Zn{sub 2} paddle wheel with the binding energy of {approx}0.2 eV per H{sub 2}. We also propose the use of two-dimensional Co{sub 2} and Zn{sub 2} paddle wheel frameworks that could have strongly adsorbed dihydrogen up to 1.35 wt % for noncryogenic hydrogen storage applications.

  8. Structure, vibrations, and hydrogen bond parameters of dibenzotetraaza[14]annulene

    NASA Astrophysics Data System (ADS)

    Gawinkowski, S.; Eilmes, J.; Waluk, J.

    2010-07-01

    Geometry and vibrational structure of dibenzo[ b, i][1,4,8,11]tetraaza[14]annulene (TAA) have been studied using infrared and Raman spectroscopy combined with quantum-chemical calculations. The assignments were proposed for 106 out of the total of 108 TAA vibrations, based on comparison of the theoretical predictions with the experimental data obtained for the parent molecule and its isotopomer in which the NH protons were replaced by deuterons. Reassignments were suggesteded for the NH stretching and out-of-plane vibrations. The values of the parameters of the intramolecular NH⋯N hydrogen bonds were analysed in comparison with the corresponding data for porphyrin and porphycene, molecules with the same structural motif, a cavity composed of four nitrogen atoms and two inner protons. Both experiment and calculations suggest that the molecule of TAA is not planar and is present in a trans tautomeric form, with the protons located on the opposite nitrogen atoms.

  9. Extra adsorption and adsorbate superlattice formation in metal-organic frameworks

    NASA Astrophysics Data System (ADS)

    Sung Cho, Hae; Deng, Hexiang; Miyasaka, Keiichi; Dong, Zhiyue; Cho, Minhyung; Neimark, Alexander V.; Ku Kang, Jeung; Yaghi, Omar M.; Terasaki, Osamu

    2015-11-01

    Metal-organic frameworks (MOFs) have a high internal surface area and widely tunable composition, which make them useful for applications involving adsorption, such as hydrogen, methane or carbon dioxide storage. The selectivity and uptake capacity of the adsorption process are determined by interactions involving the adsorbates and their porous host materials. But, although the interactions of adsorbate molecules with the internal MOF surface and also amongst themselves within individual pores have been extensively studied, adsorbate-adsorbate interactions across pore walls have not been explored. Here we show that local strain in the MOF, induced by pore filling, can give rise to collective and long-range adsorbate-adsorbate interactions and the formation of adsorbate superlattices that extend beyond an original MOF unit cell. Specifically, we use in situ small-angle X-ray scattering to track and map the distribution and ordering of adsorbate molecules in five members of the mesoporous MOF-74 series along entire adsorption-desorption isotherms. We find in all cases that the capillary condensation that fills the pores gives rise to the formation of ‘extra adsorption domains’—that is, domains spanning several neighbouring pores, which have a higher adsorbate density than non-domain pores. In the case of one MOF, IRMOF-74-V-hex, these domains form a superlattice structure that is difficult to reconcile with the prevailing view of pore-filling as a stochastic process. The visualization of the adsorption process provided by our data, with clear evidence for initial adsorbate aggregation in distinct domains and ordering before an even distribution is finally reached, should help to improve our understanding of this process and may thereby improve our ability to exploit it practically.

  10. The structure of deuterated benzene films adsorbed on the graphite (0001) basal plane: what happens below and above the monolayer coverage?

    PubMed

    Bahn, Emanuel; Hedgeland, Holly; Jardine, Andrew P; Henry, Paul F; Hansen, Thomas C; Fouquet, Peter

    2014-10-28

    An exact description of the interactions in aromatic carbon systems is a key condition for the design of carbon based nanomaterials. In this paper we investigate the binding and adsorbate structure of the simplest prototype system in this class - the single aromatic ring molecule benzene on graphite. We have collected neutron diffraction data of the ordered phase of deuterated benzene, C6D6, adsorbed on the graphite (0001) basal plane surface. We examined relative coverages from 0.15 up to 1.3 monolayers (ML) in a temperature range of 80 to 250 K. The results confirm the flat lying commensurate (√7 × √7)R19.1° monolayer with lattice constants a = b = 6.5 Å at coverages of less than 1 ML. For this structure we observe a progressive melting well below the desorption temperature. At higher coverages we do neither observe an ordered second layer nor a densification of the structure by upright tilting of first layer molecules, as generally assumed up to now. Instead, we see the formation of clusters with a bulk crystalline structure for coverages only weakly exceeding 1 ML. PMID:25209023

  11. Sum frequency generation vibrational spectroscopy studies of adsorbates on Pt(111): Studies of CO at high pressures and temperatures, coadsorbed with olefins and its role as a poison in ethylene hydrogenation

    SciTech Connect

    Kung, Kyle Yi

    2000-12-31

    High pressure high temperature CO adsorption and coadsorption with ethylene and propylene on Pt(111) was monitored in situ with infrared-visible sum frequency generation (SFG). At high pressures and high temperatures, CO dissociates on a Pt(111) surface to form carbon. At 400 torr CO pressure and 673K, CO modifies the Pt(111) surface through a carbonyl intermediate, and dissociates to leave carbon on the surface. SFG was used to follow the CO peak evolution from monolayer adsorption in ultra high vacuum (UHV) to 400 torr CO pressure. At this high pressure, a temperature dependence study from room temperature to 823K was carried out. Auger electron spectroscopy was used to identify carbon on the surface CO coadsorption with ethylene and CO coadsorption with propylene studies were carried out with 2-IR 1-visible SFG. With this setup, two spectral ranges covering the C-H stretch range and the CO stretch range can be monitored simultaneously. The coadsorption study with ethylene reveals that after 5L ethylene exposure on a Pt(111) surface to form ethylidyne , CO at high pressures cannot completely displace the ethylidyne from the surface. Instead, CO first adsorbs on defect sites at low pressures and then competes with ethylidyne for terrace sites at high pressures. Propylene coadsorption with CO at similar conditions shows that propylidyne undergoes conformation changes with increased CO pressure and at 1 torr, is absent from the Pt(111) surface. Experiments on CO poisoning of ethylene hydrogenation was carried by 2-IR 1-visible SFG. At 1 torr CO,10 torr ethylene and 100 torr hydrogen, CO was found to block active sites necessary for ethylene hydrogenation, Above 425K, CO desorbs from the surface to allow ethylene hydrogenation to occur. The gas phase species were monitored by gas chromatography.

  12. Catalase-like activity studies of the manganese(II) adsorbed zeolites

    NASA Astrophysics Data System (ADS)

    Ćiçek, Ekrem; Dede, Bülent

    2013-12-01

    Preparation of manganese(II) adsorbed on zeolite 3A, 4A, 5A. AW-300, ammonium Y zeolite, organophilic, molecular sieve and catalase-like enzyme activity of manganese(II) adsorbed zeolites are reported herein. Firstly zeolites are activated at 873 K for two hours before contact manganese(II) ions. In order to observe amount of adsorption, filtration process applied for the solution. The pure zeolites and manganese(II) adsorbed zeolites were analysed by FT-IR. As a result according to the FT-IR spectra, the incorporation of manganese(II) cation into the zeolite structure causes changes in the spectra. These changes are expected particularly in the pseudolattice bands connected with the presence of alumino and silicooxygen tetrahedral rings in the zeolite structure. Furthermore, the catalytic activities of the Mn(II) adsorbed zeolites for the disproportionation of hydrogen peroxide were investigated in the presence of imidazole. The Mn(II) adsorbed zeolites display efficiency in the disproportion reactions of hydrogen peroxide, producing water and dioxygen in catalase-like activity.

  13. The investigation of hydrogenation influence on structure changes of zirconium with nickel layer

    NASA Astrophysics Data System (ADS)

    Kudiiarov, V. N.; Bordulev, Yu S.; Laptev, R. S.; Pushilina, N. S.; Kashkarov, E. B.; Syrtanov, M. S.

    2016-06-01

    The results of experimental investigation of hydrogenation influence on structure changes of zirconium alloy (Zr-1%Nb) with thin nickel layer have presented in this work. Nickel layer was formed by magnetron sputter deposition. Hydrogenation was carried out at gas atmosphere at constant temperature. Different hydrogen concentrations were obtained by varying time of hydrogenation. Defect and phase structure was studied by means of X-ray diffraction, glow discharge optical emission spectroscopy, positron lifetime and Doppler broadening spectroscopies. New experimental data about the evolution of the positron annihilation parameters depending on hydrogen concentration in Zr-1Nb alloy with nickel layer was obtained.

  14. Phase Space Structures Explain Hydrogen Atom Roaming in Formaldehyde Decomposition.

    PubMed

    Mauguière, Frédéric A L; Collins, Peter; Kramer, Zeb C; Carpenter, Barry K; Ezra, Gregory S; Farantos, Stavros C; Wiggins, Stephen

    2015-10-15

    We re-examine the prototypical roaming reaction--hydrogen atom roaming in formaldehyde decomposition--from a phase space perspective. Specifically, we address the question "why do trajectories roam, rather than dissociate through the radical channel?" We describe and compute the phase space structures that define and control all possible reactive events for this reaction, as well as provide a dynamically exact description of the roaming region in phase space. Using these phase space constructs, we show that in the roaming region, there is an unstable periodic orbit whose stable and unstable manifolds define a conduit that both encompasses all roaming trajectories exiting the formaldehyde well and shepherds them toward the H2···CO well. PMID:26499774

  15. The structure of carbon monoxide adsorbed on the NaCl(100) surface—A combined LEED and DFT-D/vdW-DF study

    SciTech Connect

    Vogt, Jochen; Vogt, Birgit

    2014-12-07

    The structure of the first layer CO adsorbed on NaCl(100) is investigated experimentally by means of quantitative low-energy electron diffraction at 25 K, and theoretically by means of density functional theory. Consistent with earlier helium atom diffraction results, the monolayer structure has p(2×1) symmetry with a glide-plane along the longer axis of the unit cell. The structure analysis confirms the binding of CO via the carbon end to the NaCl(100) surface. The vertical distance of carbon above Na{sup +} is 2.58 ± 0.08 Å, in good agreement with geometry optimizations based on dispersion-corrected density functional theory, and 0.15 Å lower than predicted in calculations based on the nonlocal van der Waals density functional.

  16. The structure of carbon monoxide adsorbed on the NaCl(100) surface—a combined LEED and DFT-D/vdW-DF study.

    PubMed

    Vogt, Jochen; Vogt, Birgit

    2014-12-01

    The structure of the first layer CO adsorbed on NaCl(100) is investigated experimentally by means of quantitative low-energy electron diffraction at 25 K, and theoretically by means of density functional theory. Consistent with earlier helium atom diffraction results, the monolayer structure has p(2×1) symmetry with a glide-plane along the longer axis of the unit cell. The structure analysis confirms the binding of CO via the carbon end to the NaCl(100) surface. The vertical distance of carbon above Na(+) is 2.58 ± 0.08 Å, in good agreement with geometry optimizations based on dispersion-corrected density functional theory, and 0.15 Å lower than predicted in calculations based on the nonlocal van der Waals density functional. PMID:25481162

  17. Progress in our understanding of structure bonding and reactivity of metal surfaces and adsorbed monolayers at the molecular level: A 25 year perspective

    NASA Astrophysics Data System (ADS)

    Somorjai, G. A.

    1995-12-01

    Over fifty techniques have been developed during the past 25 years that permit molecular level investigation of structure and bonding of the surface monolayer. Among them, low-energy electron diffraction surface crystallography and vibrational spectroscopies using photons and electrons have contributed the lion's share of quantitative experimental data. (Most of these investigations have utilized small area (~1 cm 2) external surfaces, although microporous large internal surface area samples were also scrutinized.) From these studies, the physical picture of the surface which emerges is one of a separate phase with distinct structure, composition, and bonding that is distinguishable from the solid bulk. The new surface phenomena which were discovered include clean surface reconstruction, adsorbate-induced restructuring, ordering and reactivity of surface defects (steps and kinks), cluster-like bonding, the large mobility of adsorbates, and the coadsorption bond. Techniques were also developed that permit in situ molecular level study of surfaces during reactions at high pressures and temperatures with good time resolution (10 -12-10 -3 sec). Molecular surface science has had a great impact in major applications involving surface phenomena-selective adsorption, heterogeneous catalysis, coatings, microelectronics, electrochemistry, and tribology-and spawned new surface technologies. The demands of these applications focus attention on the behavior of the buried interface, both solid-liquid and solid-solid.

  18. Micro-structured femtosecond laser assisted FBG hydrogen sensor.

    PubMed

    Karanja, Joseph Muna; Dai, Yutang; Zhou, Xian; Liu, Bin; Yang, Minghong

    2015-11-30

    We discuss hydrogen sensors based on fiber Bragg gratings (FBGs) micro-machined by femtosecond laser to form microgrooves and sputtered with Pd/Ag composite film. The atomic ratio of the two metals is controlled at Pd:Ag = 3:1. At room temperature, the hydrogen sensitivity of the sensor probe micro-machined by 75 mW laser power and sputtered with 520 nm of Pd/Ag film is 16.5 pm/%H. Comparably, the standard FBG hydrogen sensitivity becomes 2.5 pm/%H towards the same 4% hydrogen concentration. At an ambient temperature of 35°C, the processed sensor head has a dramatic rise in hydrogen sensitivity. Besides, the sensor shows good response and repeatability during hydrogen concentration test. PMID:26698733

  19. Protein structural dynamics at the gas/water interface examined by hydrogen exchange mass spectrometry.

    PubMed

    Xiao, Yiming; Konermann, Lars

    2015-08-01

    Gas/water interfaces (such as air bubbles or foam) are detrimental to the stability of proteins, often causing aggregation. This represents a potential problem for industrial processes, for example, the production and handling of protein drugs. Proteins possess surfactant-like properties, resulting in a high affinity for gas/water interfaces. The tendency of previously buried nonpolar residues to maximize contact with the gas phase can cause significant structural distortion. Most earlier studies in this area employed spectroscopic tools that could only provide limited information. Here we use hydrogen/deuterium exchange (HDX) mass spectrometry (MS) for probing the conformational dynamics of the model protein myoglobin (Mb) in the presence of N(2) bubbles. HDX/MS relies on the principle that unfolded and/or highly dynamic regions undergo faster deuteration than tightly folded segments. In bubble-free solution Mb displays EX2 behavior, reflecting the occurrence of short-lived excursions to partially unfolded conformers. A dramatically different behavior is seen in the presence of N(2) bubbles; EX2 dynamics still take place, but in addition the protein shows EX1 behavior. The latter results from interconversion of the native state with conformers that are globally unfolded and long-lived. These unfolded species likely correspond to Mb that is adsorbed to the surface of gas bubbles. N(2) sparging also induces aggregation. To explain the observed behavior we propose a simple model, that is, "semi-unfolded" ↔ "native" ↔ "globally unfolded" → "aggregated". This model quantitatively reproduces the experimentally observed kinetics. To the best of our knowledge, the current study marks the first exploration of surface denaturation phenomena by HDX/MS. PMID:25761782

  20. Protein structural dynamics at the gas/water interface examined by hydrogen exchange mass spectrometry

    PubMed Central

    Xiao, Yiming; Konermann, Lars

    2015-01-01

    Gas/water interfaces (such as air bubbles or foam) are detrimental to the stability of proteins, often causing aggregation. This represents a potential problem for industrial processes, for example, the production and handling of protein drugs. Proteins possess surfactant-like properties, resulting in a high affinity for gas/water interfaces. The tendency of previously buried nonpolar residues to maximize contact with the gas phase can cause significant structural distortion. Most earlier studies in this area employed spectroscopic tools that could only provide limited information. Here we use hydrogen/deuterium exchange (HDX) mass spectrometry (MS) for probing the conformational dynamics of the model protein myoglobin (Mb) in the presence of N2 bubbles. HDX/MS relies on the principle that unfolded and/or highly dynamic regions undergo faster deuteration than tightly folded segments. In bubble-free solution Mb displays EX2 behavior, reflecting the occurrence of short-lived excursions to partially unfolded conformers. A dramatically different behavior is seen in the presence of N2 bubbles; EX2 dynamics still take place, but in addition the protein shows EX1 behavior. The latter results from interconversion of the native state with conformers that are globally unfolded and long-lived. These unfolded species likely correspond to Mb that is adsorbed to the surface of gas bubbles. N2 sparging also induces aggregation. To explain the observed behavior we propose a simple model, that is, “semi-unfolded” ↔ “native” ↔ “globally unfolded” → “aggregated”. This model quantitatively reproduces the experimentally observed kinetics. To the best of our knowledge, the current study marks the first exploration of surface denaturation phenomena by HDX/MS. PMID:25761782

  1. Study on Pt-structured anodic alumina catalysts for catalytic combustion of toluene: Effects of competitive adsorbents and competitive impregnation methods

    NASA Astrophysics Data System (ADS)

    Zhang, Qi; Luan, Hongjuan; Li, Tao; Wu, Yongqiang; Ni, Yanhui

    2016-01-01

    Novel competitive impregnation methods were used to prepare high dispersion Pt-structured anodic alumina catalysts. It is found that competitive adsorbents owning different acidity result in different Pt loading amount and also exert great effects on Pt distribution, particle size and redox ability. The suitable adsorption ability of lactic acid led to its best activity for catalytic combustion of toluene. Co-competitive and pre-competitive impregnation methods were also compared and the mechanisms of two competitive methods were proposed. Co-competitive impregnation made Pt distribute more uniformly through pore channels and resulted in better catalytic activity, because of the weaker spatial constraint effect of lactic acid. Furthermore, the optimized Pt-structured anodic alumina catalyst also showed a good chlorine-resistance under moisture atmosphere, because water could promote the reaction of dichloromethane (DCM) transformation and clean chloride by-products to release more active sites.

  2. Structure, hydrogen bonding and thermal expansion of ammonium carbonate monohydrate.

    PubMed

    Fortes, A Dominic; Wood, Ian G; Alfè, Dario; Hernández, Eduardo R; Gutmann, Matthias J; Sparkes, Hazel A

    2014-12-01

    We have determined the crystal structure of ammonium carbonate monohydrate, (NH4)2CO3·H2O, using Laue single-crystal diffraction methods with pulsed neutron radiation. The crystal is orthorhombic, space group Pnma (Z = 4), with unit-cell dimensions a = 12.047 (3), b = 4.453 (1), c = 11.023 (3) Å and V = 591.3 (3) Å(3) [ρcalc = 1281.8 (7) kg m(-3)] at 10 K. The single-crystal data collected at 10 and 100 K are complemented by X-ray powder diffraction data measured from 245 to 273 K, Raman spectra measured from 80 to 263 K and an athermal zero-pressure calculation of the electronic structure and phonon spectrum carried out using density functional theory (DFT). We find no evidence of a phase transition between 10 and 273 K; above 273 K, however, the title compound transforms first to ammonium sesquicarbonate monohydrate and subsequently to ammonium bicarbonate. The crystallographic and spectroscopic data and the calculations reveal a quite strongly hydrogen-bonded structure (EHB ≃ 30-40 kJ mol(-1)), on the basis of H...O bond lengths and the topology of the electron density at the bond critical points, in which there is no free rotation of the ammonium cation at any temperature. The barrier to free rotation of the ammonium ions is estimated from the observed librational frequency to be ∼ 36 kJ mol(-1). The c-axis exhibits negative thermal expansion, but the thermal expansion behaviour of the a and b axes is ormal. PMID:25449618

  3. Structure, hydrogen bonding and thermal expansion of ammonium carbonate monohydrate

    PubMed Central

    Fortes, A. Dominic; Wood, Ian G.; Alfè, Dario; Hernández, Eduardo R.; Gutmann, Matthias J.; Sparkes, Hazel A.

    2014-01-01

    We have determined the crystal structure of ammonium carbonate monohydrate, (NH4)2CO3·H2O, using Laue single-crystal diffraction methods with pulsed neutron radiation. The crystal is orthorhombic, space group Pnma (Z = 4), with unit-cell dimensions a = 12.047 (3), b = 4.453 (1), c = 11.023 (3) Å and V = 591.3 (3) Å3 [ρcalc = 1281.8 (7) kg m−3] at 10 K. The single-crystal data collected at 10 and 100 K are complemented by X-ray powder diffraction data measured from 245 to 273 K, Raman spectra measured from 80 to 263 K and an athermal zero-pressure calculation of the electronic structure and phonon spectrum carried out using density functional theory (DFT). We find no evidence of a phase transition between 10 and 273 K; above 273 K, however, the title compound transforms first to ammonium sesquicarbonate monohydrate and subsequently to ammonium bicarbonate. The crystallographic and spectroscopic data and the calculations reveal a quite strongly hydrogen-bonded structure (E HB ≃ 30–40 kJ mol−1), on the basis of H⋯O bond lengths and the topology of the electron density at the bond critical points, in which there is no free rotation of the ammonium cation at any temperature. The barrier to free rotation of the ammonium ions is estimated from the observed librational frequency to be ∼ 36 kJ mol−1. The c-axis exhibits negative thermal expansion, but the thermal expansion behaviour of the a and b axes is ormal. PMID:25449618

  4. Structure and hydrogen bonding in plasma deposited polymorphous silicon thin films

    NASA Astrophysics Data System (ADS)

    Lebib, S.; Cabarrocas, P. Roca I.

    2004-04-01

    We present a detailed study of the structure and hydrogen bonding in silicon thin films ranging from amorphous to microcrystalline. We emphasize the results for hydrogenated polymorphous silicon films obtained under plasma conditions close to powder formation where silicon clusters and nanocrystals contribute to growth. Fourier Transform Infra-Red (FTIR) spectroscopy, Raman spectroscopy, X-Ray-Diffraction (XRD), and hydrogen evolution measurements are performed to characterize the hydrogen bonding and the structure of the films in their as-deposited state and after isochronal annealing at increasing temperature in the range of 300 to 600 °C. While Raman spectroscopy and XRD give an average information on the structure of the films, without clear evidence of the presence of crystallites in the polymorphous films, infrared spectroscopy and hydrogen evolution measurements which probe the local hydrogen related structure are shown to be perfectly adapted to characterize polymorphous silicon films. In particular, IR spectroscopy measurements, reveal the presence of a stretching band at 2030 cm^{-1}, associated with a peak at 873 cm^{-1} in the bending region and a downward shift in the Si-H wagging mode from 640 cm^{-1} to 622 cm^{-1}. We attribute the 2030 cm^{-1} mode to the presence of hydrogen bonded at the surface of the plasma produced silicon clusters and nanocrystals. This assignment is supported by hydrogen evolution measurements in which a sharp low-temperature hydrogen evolution peak appears at around 420 °C followed by up to five peaks at higher temperatures. This particular hydrogen bonding in polymorphous silicon films is also supported by isochronal annealing studies which show that the bands at 2030 cm^{-1} and 873 cm^{-1} vanish at annealing temperatures corresponding to the low temperature hydrogen evolution peak. Based on these results and their correlation with the hydrogen-related material structure, we propose a picture for the structure of

  5. Nanohole Structuring for Improved Performance of Hydrogenated Amorphous Silicon Photovoltaics.

    PubMed

    Johlin, Eric; Al-Obeidi, Ahmed; Nogay, Gizem; Stuckelberger, Michael; Buonassisi, Tonio; Grossman, Jeffrey C

    2016-06-22

    While low hole mobilities limit the current collection and efficiency of hydrogenated amorphous silicon (a-Si:H) photovoltaic devices, attempts to improve mobility of the material directly have stagnated. Herein, we explore a method of utilizing nanostructuring of a-Si:H devices to allow for improved hole collection in thick absorber layers. This is achieved by etching an array of 150 nm diameter holes into intrinsic a-Si:H and then coating the structured material with p-type a-Si:H and a conformal zinc oxide transparent conducting layer. The inclusion of these nanoholes yields relative power conversion efficiency (PCE) increases of ∼45%, from 7.2 to 10.4% PCE for small area devices. Comparisons of optical properties, time-of-flight mobility measurements, and internal quantum efficiency spectra indicate this efficiency is indeed likely occurring from an improved collection pathway provided by the nanostructuring of the devices. Finally, we estimate that through modest optimizations of the design and fabrication, PCEs of beyond 13% should be obtainable for similar devices. PMID:27227369

  6. Sulfates of organic diamines: hydrogen-bonded structures and properties

    NASA Astrophysics Data System (ADS)

    Jayaraman, K.; Choudhury, A.; Rao, C. N. R.

    2002-03-01

    In order to investigate the supramolecular hydrogen-bonded networks and other structural features exhibited by compounds containing an organic cation and an inorganic anion, sulfates of the organic diamines, ethylenediamine ( I), 1,3-diaminopropane ( II), piperazine ( III), and 1,4-diazabicyclo[2.2.2]octane (DABCO) ( IV) have been prepared investigated by X-ray crystallography. While II, III, and IV crystallize in the centrosymmetric space group, Pbca, P2 1/n, Pbcn, respectively, I crystallizes in the non-centrosymmetric space group, P4 1 exhibiting chirality and weak NLO properties. I- IV exhibit different types of supramolecular H-bonded networks involving the organic cation and the SO 2-4 anion. The nature and strength of the H-bonding network vary from one compound to another, with the strongest network found in piperazinium sulfate, III, and the weakest in II. While in III, water molecules form part of the H-bonded network, they are present as guest molecules in the channels of IV. Thermal stability of the compounds as well as the infrared spectra reflect the stabilities of these H-bonded solids.

  7. States of water adsorbed on perindopril crystals

    NASA Astrophysics Data System (ADS)

    Stepanov, V. A.; Khmelevskaya, V. S.; Bogdanov, N. Yu.; Gorchakov, K. A.

    2011-10-01

    The relationship between the structural state of adsorbed water, the crystal structure of the substances, and the solubility of the perindopril salt C19H32N2O5 · C4H11N in water was studied by IR spectroscopy and X-ray diffractometry. The high-frequency shift of the stretching vibrations of adsorbed water and the solubility depend on the crystal structure of the drug substance. A reversible chemical reaction occurred between the adsorbed water and the perindopril salt.

  8. Dependence of hydrogen permeabilities of isotropic graphites on the pore structure

    NASA Astrophysics Data System (ADS)

    Yamawaki, M.; Yamaguchi, K.; Suzuki, Y.; Tanaka, S.

    1991-03-01

    The permeation behavior of molecular hydrogen through isotropic graphites is investigated. The observed dependences of the permeation rate on pressure, specimen thickness, temperature and molecular weight suggest that hydrogen permeates by molecular flow, probably through open pores. A simple pore structure model is developed and is compared with the experimental results. It is revealed that hydrogen permeation through isotropic graphites depends not only on the pore size or the porosity, but also on the pore size distribution and tortuosity.

  9. High temperature carbon dioxide capture on nano-structured MgO-Al2O3 and CaO-Al2O3 adsorbents: an experimental and theoretical study.

    PubMed

    Bang, Yongju; Han, Seung Ju; Kwon, Soonchul; Hiremath, Vishwanath; Song, In Kyu; Seo, Jeong Gil

    2014-11-01

    Nano-structured alkaline-earth metal oxide adsorbents (denoted as MgO-Al2O3 and CaO-Al2O3) were prepared by an epoxide-driven one-pot sol-gel method, and they were applied to the dynamic and static CO2 adsorption. For comparison, a nano-structured aluminum oxide adsorbent (denoted as Al2O3) was also prepared by a similar method. MgO-Al2O3 adsorbent exhibited a well-developed mesopore structure through the formation of MgAl2O4 spinel phase, whereas CaO-Al2O3 adsorbent was composed of nano-sized CaO and CaAl2O4, resulting in a pore plugging. It was revealed that total basicity increased in the order of Al2O3 (0.11 mmol-CO2/g) < MgO-Al2O3 (0.37 mmol-CO2/g) < CaO-Al2O3, (1.21 mmol-CO2/g), which is in concurrent with adsorption energy obtained from DFT calculations. However, it was found that both basicity and base strength of the adsorbents played an important role in determining the CO2 adsorptive performance at different operating temperature. Among the adsorbents tested, MgO-Al2O3, which mostly retained medium basic sites, exhibited a best CO2 adsorptive performance at 200 degrees C. Furthermore, the experimental results are well supported by theoretical estimation, suggesting a useful design method of adsorbents for facile and regenerative adsorption in the applications of CO2 capture. PMID:25958558

  10. Hollow-fiber-based adsorbers for gas separation by pressure-swing adsorption

    SciTech Connect

    Feng, X.; Pan, C.Y.; McMinis, C.W.; Ivory, J.; Ghosh, D.

    1998-07-01

    Hollow-fiber-based adsorbers for gas separation by pressure-swing adsorption (PSA) was studied experimentally. The high efficiency of hollow-fiber-based adsorbers for gas separation was illustrated by hydrogen separation using fine-powder-activated carbon and molecular sieve as adsorbents. The adsorption equilibrium and dynamics of the hollow-fiber adsorbers were determined. The pressure drop of the gas flowing through the adsorbers was also examined. The adsorbers were tested for hydrogen separation from nitrogen, carbon dioxide, and a multicomponent gas mixture simulating ammonia synthesis purge gas. The PSA systems using the hollow-fiber adsorbers were very effective for hydrogen purification. The high separation efficiency is derived from the fast mass-transfer rate and low pressure drop, two key features of hollow-fiber-based adsorbers.

  11. Intramolecular hydrogen bonding and calixarene-like structures in p-cresol/formaldehyde resins

    NASA Astrophysics Data System (ADS)

    Opaprakasit, P.; Scaroni, A.; Painter, P.

    2001-08-01

    The nature of the strong hydrogen bonds found in p-cresol/formaldehyde (PCF) resins, compared to ordinary phenolic compounds, is studied. The evidence from FTIR spectroscopy indicates that this strong interaction is due to intramolecular hydrogen bonding from "calixarene-like" structures. The formation of this structure in PCF is enabled by its "linear" (all- ortho-linkage) structure, which is not present in branched resins. Additionally, a transition is observed at around 175 to 200°C where the intramolecular hydrogen bonded structure is lost. This structure cannot be recovered upon cooling or annealing due to restrictions on conformational rotations that are coupled to a new pattern of intermolecular hydrogen bonding. However, the structure is reformed by dissolving the resin in solution and casting new films.

  12. Analyzing and Tracking Burning Structures in Lean Premixed Hydrogen Flames

    SciTech Connect

    Bremer, Peer-Timo; Weber, Gunther; Pascucci, Valerio; Day, Marc; Bell, John

    2009-06-01

    This paper presents topology-based methods to robustly extract, analyze, and track features defined as subsets of isosurfaces. First, we demonstrate how features identified by thresholding isosurfaces can be defined in terms of the Morse complex. Second, we present a specialized hierarchy that encodes the feature segmentation independent of the threshold while still providing a flexible multi-resolution representation. Third, for a given parameter selection we create detailed tracking graphs representing the complete evolution of all features in a combustion simulation over several hundred time steps. Finally, we discuss a user interface that correlates the tracking information with interactive rendering of the segmented isosurfaces enabling an in-depth analysis of the temporal behavior. We demonstrate our approach by analyzing three numerical simulations of lean hydrogen flames subject to different levels of turbulence. Due to their unstable nature, lean flames burn in cells separated by locally extinguished regions. The number, area, and evolution over time of these cells provide important insights into the impact of turbulence on the combustion process. Utilizing the hierarchy we can perform an extensive parameter study without re-processing the data for each set of parameters. The resulting statistics enable scientist to select appropriate parameters and provide insight into the sensitivity of the results wrt. to the choice of parameters. Our method allows for the first time to quantitatively correlate the turbulence of the burning process with the distribution of burning regions, properly segmented and selected. In particular, our analysis shows that counter-intuitively stronger turbulence leads to larger cell structures, which burn more intensely than expected. This behavior suggests that flames could be stabilized under much leaner conditions than previously anticipated.

  13. CO2 Hydrogenation to Formic Acid on Ni(111)

    SciTech Connect

    Peng, Guowen; Sibener, S. J.; Schatz, George C.; Ceyer, Sylvia T.; Mavrikakis, Manos

    2011-12-26

    Periodic, self-consistent, density functional theory (DFT) calculations are employed to study CO2 hydrogenation on Ni(111). CO2 hydrogenation with H adsorbed on the surface and with H absorbed in the subsurface is investigated systematically, and the respective microscopic reaction mechanisms are elucidated. We show that on Ni(111) CO2 hydrogenation to formate intermediate is more favorable than to carboxyl intermediate. The hydrogenation to formate goes through the unidentate structure that rapidly transforms into the bidentate structure. Further hydrogenation from formate to formic acid is energetically more difficult than formate formation. Formation of adsorbed formic acid from adsorbed CO2 and surface hydrogen is an endothermic reaction. Because subsurface H in Ni(111) is substantially less stable compared to surface H, its reaction with adsorbed CO2 to adsorbed formic acid is an exothermic one. Finally, our results may have significant implications for the synthesis of liquid fuels from CO2 and for catalytic hydrogenation reactions in general.

  14. Adsorptive capacity and evolution of the pore structure of alumina on reaction with gaseous hydrogen fluoride.

    PubMed

    McIntosh, Grant J; Agbenyegah, Gordon E K; Hyland, Margaret M; Metson, James B

    2015-05-19

    Brunauer-Emmet-Teller (BET) specific surface areas are generally used to gauge the propensity of uptake on adsorbents, with less attention paid to kinetic considerations. We explore the importance of such parameters by modeling the pore size distributions of smelter grade aluminas following HF adsorption, an industrially important process in gas cleaning at aluminum smelters. The pore size distributions of industrially fluorinated aluminas, and those contacted with HF in controlled laboratory trials, are reconstructed from the pore structure of the untreated materials when filtered through different models of adsorption. These studies demonstrate the presence of three distinct families of pores: those with uninhibited HF uptake, kinetically limited porosity, and pores that are surface blocked after negligible scrubbing. The surface areas of the inaccessible and blocked pores will overinflate estimates of the adsorption capacity of the adsorbate. We also demonstrate, contrary to conventional understanding, that porosity changes are attributed not to monolayer uptake but more reasonably to pore length attenuation. The model assumes nothing specific regarding the Al2O3-HF system and is therefore likely general to adsorbate/adsorbent phenomena. PMID:25913681

  15. Ultrafast conversions between hydrogen bonded structures in liquid water observed by femtosecond x-ray spectroscopy

    SciTech Connect

    Wen, Haidan; Huse, Nils; Schoenlein, Robert W.; Lindenberg, Aaron M.

    2010-05-01

    We present the first femtosecond soft x-ray spectroscopy in liquids, enabling the observation of changes in hydrogen bond structures in water via core-hole excitation. The oxygen K-edge of vibrationally excited water is probed with femtosecond soft x-ray pulses, exploiting the relation between different water structures and distinct x-ray spectral features. After excitation of the intramolecular OH stretching vibration, characteristic x-ray absorption changes monitor the conversion of strongly hydrogen-bonded water structures to more disordered structures with weaker hydrogen-bonding described by a single subpicosecond time constant. The latter describes the thermalization time of vibrational excitations and defines the characteristic maximum rate with which nonequilibrium populations of more strongly hydrogen-bonded water structures convert to less-bonded ones. On short time scales, the relaxation of vibrational excitations leads to a transient high-pressure state and a transient absorption spectrum different from that of statically heated water.

  16. Structural investigations of hydrogenated epitaxial graphene grown on 4H-SiC (0001)

    SciTech Connect

    Tokarczyk, M.; Kowalski, G. Stępniewski, R.; Możdżonek, M.; Strupiński, W.; Ciepielewski, P.; Borysiuk, J.

    2013-12-09

    Structural investigations of hydrogenated epitaxial graphene grown on SiC(0001) are presented. It is shown that hydrogen plays a dual role. In addition to contributing to the well-known removal of the buffer layer, it goes between the graphene planes, resulting in an increase of the interlayer spacing to 3.6 Å–3.8 Å. It is explained by the intercalation of molecular hydrogen between carbon planes, which is followed by H{sub 2} dissociation, resulting in negatively charged hydrogen atoms trapped between the graphene layers, with some addition of covalent bonding to carbon atoms. Negatively charged hydrogen may be responsible for p-doping observed in hydrogenated multilayer graphene.

  17. Sequential desorption energy of hydrogen from nickel clusters

    SciTech Connect

    Deepika,; Kumar, Rakesh; R, Kamal Raj.; Kumar, T. J. Dhilip

    2015-06-24

    We report reversible Hydrogen adsorption on Nickel clusters, which act as a catalyst for solid state storage of Hydrogen on a substrate. First-principles technique is employed to investigate the maximum number of chemically adsorbed Hydrogen molecules on Nickel cluster. We observe a maximum of four Hydrogen molecules adsorbed per Nickel atom, but the average Hydrogen molecules adsorbed per Nickel atom decrease with cluster size. The dissociative chemisorption energy per Hydrogen molecule and sequential desorption energy per Hydrogen atom on Nickel cluster is found to decrease with number of adsorbed Hydrogen molecules, which on optimization may help in economical storage and regeneration of Hydrogen as a clean energy carrier.

  18. Toward quantitative STM: Scanning tunneling microscopy study of structure and dynamics of adsorbates on transition metal surfaces

    SciTech Connect

    Dunphy, J.C.

    1995-05-01

    STM was applied to chemisorbed S layers on Re(000l) and Mo(100) surfaces. As function of coverage on both these surfaces, S orders into several different overlayer structures, which have been studied by dynamic LEED. STM images of all these structures were obtained. Approximate location of S atoms in the structures was determined by inspecting the images, especially the regions containing defects. Results are in agreement with LEED except for the p(2{times}l) overlayer of sulfur on Mo(100). The STM images were compared to calculations made with Electron Scattering Quantum Chemistry (ESQC) theory. Variation of contrast in experimental images is explained as a result of changes in STM tip termination structure. STM image contrast is a result of changes in the interference between different paths for the tunneling electrons. The simplest structure on the Mo(100) surface was used as a model for developing and testing a method of quantitative structure determination with the STM. Experimental STM images acquired under a range of tunneling conditions were compared to theoretical calculations of the images as a function of surface structure to determine the structure which best fit. Results matched within approximately 0.1 Angstroms a LEED structural determination. At lower S coverage, diffusion of S atoms over the Re(0001) surface and the lateral interaction between these atoms were investigated by application of a new image analysis technique. The interaction between the S and a coadsorbed CO layer was also studied, and CO was found to induce compression of the S overlayer. A similar result was found for Au deposited on the sulfur covered Mo(100) surface. The interaction between steps on the Mo surface was found to be influenced by S adsorption and this observation was interpreted with the theory of equilibrium crystal shape. Design of an STM instrument which operates at cryogenic and variable sample temperatures, and its future applications, are described.

  19. Structural properties and magic structures in hydrogenated finite and infinite silicon nanowires

    NASA Astrophysics Data System (ADS)

    Zdetsis, A. D.; Koukaras, E. N.; Garoufalis, C. S.

    2007-11-01

    Unusual effects such as bending and "canting," related with the stability, have been identified by ab initio real-space calculations for hydrogenated silicon nanowires. We have examined in detail the electronic and structural properties of finite and infinite nanowires as a function of length (and width) and have developed stability and bending rules, demonstrating that "magic" wires do not bend. Reconstructed 2×1 nanowires are practically as stable as the magic ones. Our calculations are in good agreement with the experimental data of Ma et al. [Science 299, 1874 (2003).].

  20. CRYOGENIC ADSORPTION OF HYDROGEN ISOTOPES OVER NANO-STRUCTURED MATERIALS

    SciTech Connect

    Xiao, S.; Heung, L.

    2010-10-07

    Porous materials such as zeolites, activated carbon, silica gels, alumina and a number of industrial catalysts are compared and ranked for hydrogen and deuterium adsorption at liquid nitrogen temperature. All samples show higher D{sub 2} adsorption than that of H{sub 2}, in which a HY sample has the greatest isotopic effect while 13X has the highest hydrogen uptake capacity. Material's moisture content has significant impact to its hydrogen uptake. A material without adequate drying could result in complete loss of its adsorption capacity. Even though some materials present higher H{sub 2} adsorption capacity at full pressure, their adsorption at low vapor pressure may not be as good as others. Adsorption capacity in a dynamic system is much less than in a static system. A sharp desorption is also expected in case of temperature upset.

  1. Computer simulation of hydrogen permeability of structural materials through protective coating defect

    NASA Astrophysics Data System (ADS)

    Kostikova, E. K.; Zaika, Yu V.

    2015-12-01

    In the context of problems of hydrogen and thermonuclear power engineering intensive research of the hydrogen isotopes properties is being conducted. Mathematical models help to specify physical-chemical ideas about the interaction of hydrogen isotopes with structural materials, to estimate the limiting factors and to significantly reduce the expenses of experimental research by means of numerical simulation for different parameters and experimental conditions (including extreme ones). Classical diffusion models are often insufficient. The paper is devoted to the models and numerical solution of the boundary-value problems of hydrogen permeability taking into account nonlinear sorption-desorption dynamics on the surface. Algorithms based on difference approximations. The results of computer simulation of the hydrogen flux from a structural material sample are presented.

  2. Formation of ordered gas-solid structures via solidification in metal-hydrogen systems

    SciTech Connect

    Shapovalov, V.I. |

    1998-12-31

    This work contains theoretical discussions concerning the large amount of previously published experimental data related to gas eutectic transformations in metal-hydrogen systems. Theories of pore nucleation and growth in these gas-solid materials will be presented and related to observed morphologies and structures. This work is intended to be helpful to theorists that work with metal-hydrogen systems, and experimentalists engaged in manufacturing technology development of these ordered gas-solid structures.

  3. Nickel-hydrogen. [metal hydrides, electrochemical corrosion, and structural design

    NASA Technical Reports Server (NTRS)

    Mchenry, E. J.

    1977-01-01

    Because of the disintegration of LaNi5 as the lattice expands on absorbing hydrogen, a nickel hydrogen cell similar to a nickel cadmium cell was designed. The positive electrode is wrapped in a microporous separator and the leads are insulated. A negative conducting grid is inserted and welded to the top of the can into an open ended container which is then turned upside down and filled so that LiNa5 powder occupies all the space not used by the rest of the components. The bottom of the can is then welded on. A fill tube is located either on the bottom or on the top of the can. When welded shut, the cell is put into a pressure bomb and the lanthanum nickel is activated at about 1,000 pounds of hydrogen. Electrolytes are added to the cell as well as whatever amount of hydrogen precharge desired, and the cell is sealed. Advantages and disadvantages of the cell are discussed.

  4. Characterization of pore structure of a strong anion-exchange membrane adsorbent under different buffer and salt concentration conditions.

    PubMed

    Tatárová, Ivana; Fáber, René; Denoyel, Renaud; Polakovic, Milan

    2009-02-01

    The quantitative characterization of pore structure of Sartobind Q, a strongly basic membrane anion exchanger that is formed by cross-linked cellulose support and a hydrogel layer on its pore surface, was made combining the results obtained by several experimental techniques: liquid impregnation, batch size-exclusion, inverse size-exclusion chromatography, and permeability. Mercury intrusion and nitrogen sorption porosimetry were carried out for a dry cellulose support membrane in order to get additional information for building a model of the bimodal pore structure. The model incorporated the distribution of the total pore volume between transport and gel-layer pores and the partitioning of solutes of different molecular weights was expressed through the cylindrical pore model for the transport pores and random plane model for the gel layer. The effect of composition of liquid phase on the pore structure was investigated in redistilled water, phosphate and Tris-HCl buffers containing up to 1M NaCl. Evident differences in the bimodal pore structure were observed here when both the specific volume and size of the hydrogel layer pores significantly decreased with the ionic strength of liquid phase. PMID:19117574

  5. Adsorption mechanism of ester phosphate on baryum titanate in organic medium. Preliminary results on the structure of the adsorbed layer

    NASA Astrophysics Data System (ADS)

    Le Bars, N.; Tinet, D.; Faugère, A. M.; van Damme, H.; Levitz, P.

    1991-05-01

    The purpose of this work is to evidence the adsorption mechanism and the structure of commercial phosphate ester surfactant stabilized BaTiO3 in organic suspension, and to relate these characteristics to rheological behaviour. Binders and plasticizers are omitted to reduce the number of system components. Firstly adsorption isotherm were determined by inductively coupled argon plasma technique and interpretated based on transmission electron microscopy and ^{31}P nuclear magnetic resonance studies. Preliminary rheological measurements were then performed and related to suspension structure. Structure of the adsorption layer is critically discussed. L'objectif de cette étude est la compréhension du mécanisme d'adsorption d'agents dispersants phosphatés dans des suspensions organiques de BaTiO3, ainsi que la caractérisation de la structure, et du comportement rhéologique de ces suspensions. Liants et plastifiants ne sont pas utilisés, afin de réduire le nombre de composants dans le système. Dans un premier temps, l'isotherme d'adsorption est établie par dosage en émission plasma, puis interprétée sur la base de résultats de Microscopie Eloctronique à Transmission, et de spectroscopie par Résonance Magnétique Nucléaire du ^{31}P. Des mesures rhéologiques préliminaires sont effectuées pour caractériser la structure des suspensions.

  6. Structural instability of the diamond C(111) surface induced by hydrogen chemisorption

    NASA Astrophysics Data System (ADS)

    Su, C.; Lin, J.-C.

    1998-12-01

    The low energy electron diffraction technique was used to study the hydrogen chemisorption induced structural instability on the diamond C(111) surface. From the quantitative analysis of diffraction spots intensity on the as-dosed, partially desorbed, and annealed hydrogenated C(111) surfaces, the correlation between the (1×1)↔(2×1) phase transformation, hydrogen coverage, and surface temperature is shown. Thermal treatment with partial hydrogen desorption on the fully hydrogenated C(111) surface induces a (1×1)-(2×1) reconstruction with the observable half-order spots intensity (I1/2) emerging only after heating the substrate to 1270 K. Conversely, thermal annealing of the partially hydrogenated C(111) surface without desorbing H causes the size shrinking of the (2×1) domains as well as the relaxation of the hydrogenated domains. The temperature effect of I1/2 summarized from both thermal studies reveals that the (2×1) domain instability originated from the relaxation of the hydrogenated domains at elevated temperatures. In addition, the H chemisorption behavior on C(111) at different surface temperatures suggests that the terrace edges could be the preferential sites for the initial H adsorption and the growth of the hydrogenated domains might predominantly start from the terrace boundaries at a surface temperature as low as 125 K. The present study also allows us to tentatively propose that there might exist a low-temperature chemisorption state in addition to the hydrogenated metastable state as suggested by the sum-frequency generation spectroscopy and theoretical studies. A possible mechanism for the hydrogen chemisorption induced structural transformation is also discussed.

  7. Hydrogen-bonds structure in poly(2-hydroxyethyl methacrylate) studied by temperature-dependent infrared spectroscopy

    PubMed Central

    Morita, Shigeaki

    2014-01-01

    Hydrogen-bonds structure in poly(2-hydroxyethyl methacrylate) (PHEMA) were investigated by means of temperature-dependent infrared (IR) spectroscopy. Spectral variations involved with the OH…OH and C=O…HO types of hydrogen-bonds were found around the glass transition temperature of 80°C. Hydrogen-bonds among the hydroxyl groups gradually dissociate with increasing temperature. In contrast, discontinuous variation in the carbonyl bands was observed around the glass transition temperature. An association of the C=O…HO type of hydrogen-bond with increasing temperature above the glass transition temperature was revealed. These were concluded from the present study that hydrogen-bonds among the hydroxyl groups in each side chain terminal suppress the main chain mobility in the polymer matrix below the glass transition temperature, while the dissociation of the OH…OH type of hydrogen-bonds induces the association of the C=O…HO type of hydrogen-bond. As a result, the mobility of the main chain is induced by the change in hydrogen-bonds structure at the glass transition temperature. PMID:24790979

  8. Hydrogen-Bonds Structure in Poly(2-Hydroxyethyl Methacrylate) Studied by Temperature-Dependent Infrared Spectroscopy

    NASA Astrophysics Data System (ADS)

    Morita, Shigeaki

    2014-03-01

    Hydrogen-bonds structure in poly(2-hydroxyethyl methacrylate) (PHEMA) were investigated by means of temperature-dependent infrared (IR) spectroscopy. Spectral variations involved with the OH•••OH and C=O•••HO types of hydrogen-bonds were found around the glass transition temperature of 80 °C. Hydrogen-bonds among the hydroxyl groups gradually dissociate with increasing temperature. In contrast, discontinuous variation in the carbonyl bands was observed around the glass transition temperature. An association of the C=O•••HO type of hydrogen-bond with increasing temperature above the glass transition temperature was revealed. These were concluded from the present study that hydrogen-bonds among the hydroxyl groups in each side chain terminal suppress the main chain mobility in the polymer matrix below the glass transition temperature, while the dissociation of the OH•••OH type of hydrogen-bonds induces the association of the C=O•••HO type of hydrogen-bond. As a result, the mobility of the main chain is induced by the change in hydrogen-bonds structure at the glass transition temperature.

  9. Quantitative structure-property relationships on photolysis of PCDD/Fs adsorbed to spruce (Picea abies (L.) Karst.) needle surfaces under sunlight irradiation.

    PubMed

    Niu, Junfeng; Huang, Liping; Chen, Jingwen; Yu, Gang; Schramm, Karl-Werner

    2005-02-01

    By partial least squares (PLS) regression, quantitative structure-property relationship (QSPR) models were developed for photolysis half-life (t1/2) of PCDD/Fs and PAHs sorbed to spruce (Picea abies (L.) Karst.) needle surfaces and irradiated by sunlight. Quantum chemical descriptors computed by PM3 Hamiltonian were used predictor variables. PLS analysis for the PCDDs and PAHs respectively resulted in no correlation by our statistical methods. The cross-validated Qcum2 value for the optimal QSPR model of PCDFs is 0.722, indicating a good predictive ability for logt1/2 of PCDFs adsorbed to spruce needle surfaces. The QSPR results show that the number of chlorine atoms bonded to the parent structure and (E(LUMO)-E(HOMO))2 has a dominant effect on t1/2 values of PCDFs. Increasing the number of chlorine atoms and (E(LUMO)-E(HOMO))2 values leads to increase of logt1/2 values of PCDFs. PMID:15639263

  10. Effects of hydroxylated γ-Al2O3 support and H adsorbate on the Geometry and Electronic Structure of Pt Nanoparticles

    NASA Astrophysics Data System (ADS)

    Shafai, Ghazal; Hong, Sampyo; Rahman, Talat S.

    2015-03-01

    We have studied the effects of hydroxylated γ-Al2O3(110) support and H adsorbate on the geometry and electronic structures of Ptx (n =22,44) nanoparticles (NP) using DFT. We find that Pt22 interacts more strongly with a less hydrated support, while Pt44 more with a hydroxylated one. We also find a structural transition of the Pt22 (and not Pt44) from a biplanar to a 3D-like shape as a function of hydroxilation. H induces a much larger shift in the unoccupied d-band center than does the support. Also, these shifts are well correlated with metal-support interaction. The increased hydroxylation on γ-Al2O3(110) causes weaker metal-support interaction. As a result, the d-band width of a Pt NP decreases causing the center of the unoccupied d band to shift to lower energy (red shift). In the light of these results, we will discuss the features of XANES spectra obtained for γ-Al2O3(110) supported Pt nanoparticles. Work supported in part by NSF under Grant CHE-1310327.

  11. Analysis of structural changes in active site of luciferase adsorbed on nanofabricated hydrophilic Si surface by molecular-dynamics simulations

    SciTech Connect

    Nishiyama, Katsuhiko; Hoshino, Tadatsugu

    2007-05-21

    Interactions between luciferase and a nanofabricated hydrophilic Si surface were explored by molecular-dynamics simulations. The structural changes in the active-site residues, the residues affecting the luciferin binding, and the residues affecting the bioluminescence color were smaller on the nanofabricated hydrophilic Si surface than on both a hydrophobic Si surface and a hydrophilic Si surface. The nanofabrication and wet-treatment techniques are expected to prevent the decrease in activity of luciferase on the Si surface.

  12. Improved estimates of separation distances to prevent unacceptable damage to nuclear power plant structures from hydrogen detonation for gaseous hydrogen storage. Technical report

    SciTech Connect

    Not Available

    1994-05-01

    This report provides new estimates of separation distances for nuclear power plant gaseous hydrogen storage facilities. Unacceptable damage to plant structures from hydrogen detonations will be prevented by having hydrogen storage facilities meet separation distance criteria recommended in this report. The revised standoff distances are based on improved calculations on hydrogen gas cloud detonations and structural analysis of reinforced concrete structures. Also, the results presented in this study do not depend upon equivalencing a hydrogen detonation to an equivalent TNT detonation. The static and stagnation pressures, wave velocity, and the shock wave impulse delivered to wall surfaces were computed for several different size hydrogen explosions. Separation distance equations were developed and were used to compute the minimum separation distance for six different wall cases and for seven detonating volumes (from 1.59 to 79.67 lbm of hydrogen). These improved calculation results were compared to previous calculations. The ratio between the separation distance predicted in this report versus that predicted for hydrogen detonation in previous calculations varies from 0 to approximately 4. Thus, the separation distances results from the previous calculations can be either overconservative or unconservative depending upon the set of hydrogen detonation parameters that are used. Consequently, it is concluded that the hydrogen-to-TNT detonation equivalency utilized in previous calculations should no longer be used.

  13. Molecular Adsorber Coating

    NASA Technical Reports Server (NTRS)

    Straka, Sharon; Peters, Wanda; Hasegawa, Mark; Hedgeland, Randy; Petro, John; Novo-Gradac, Kevin; Wong, Alfred; Triolo, Jack; Miller, Cory

    2011-01-01

    A document discusses a zeolite-based sprayable molecular adsorber coating that has been developed to alleviate the size and weight issues of current ceramic puck-based technology, while providing a configuration that more projects can use to protect against degradation from outgassed materials within a spacecraft, particularly contamination-sensitive instruments. This coating system demonstrates five times the adsorption capacity of previously developed adsorber coating slurries. The molecular adsorber formulation was developed and refined, and a procedure for spray application was developed. Samples were spray-coated and tested for capacity, thermal optical/radiative properties, coating adhesion, and thermal cycling. Work performed during this study indicates that the molecular adsorber formulation can be applied to aluminum, stainless steel, or other metal substrates that can accept silicate-based coatings. The coating can also function as a thermal- control coating. This adsorber will dramatically reduce the mass and volume restrictions, and is less expensive than the currently used molecular adsorber puck design.

  14. Hydrogen Embrittlement of a 1500-MPa Tensile Strength Level Steel with an Ultrafine Elongated Grain Structure

    NASA Astrophysics Data System (ADS)

    Nie, Yihong; Kimura, Yuuji; Inoue, Tadanobu; Yin, Fuxing; Akiyama, Eiji; Tsuzaki, Kaneaki

    2012-05-01

    A deformation of a tempered martensitic structure ( i.e., tempforming) at 773 K (500 °C) was applied to a 0.6 pct C-2 pct Si-1 pct Cr steel. The hydrogen embrittlement (HE) property of the tempformed (TF) steel was investigated by a slow strain rate test (SSRT) and an accelerated atmospheric corrosion test (AACT). Hydrogen content within the samples after SSRT and AACT was measured by thermal desorption spectrometry (TDS). The tempforming at 773 K (500 °C) using multipass caliber rolling with an accumulative are reduction of 76 pct resulted in the evolution of an ultrafine elongated grain (UFEG) structure with a strong <110>//rolling direction (RD) fiber deformation texture and a dispersion of spheroidized cementite particles. The SSRT of the pre-hydrogen-charged notched specimens and the AACT demonstrated that the TF sample had superior potential for HE resistance to the conventional quenched and tempered (QT) sample at a tensile strength of 1500 MPa. The TDS analysis also indicated that the hydrogen might be mainly trapped by reversible trapping sites such as grain boundaries and dislocations in the TF sample, and the hydrogen trapping states of the TF sample were similar to those of the QT sample. The QT sample exhibited hydrogen-induced intergranular fracture along the boundaries of coarse prior-austenite grains. In contrast, the hydrogen-induced cracking occurred in association with the UFEG structure in the TF sample, leading to the higher HE resistance of the TF sample.

  15. The structure and reactivity of adsorbates on stepped Rh and Pt surfaces investigated by LEED, HREELS, TPD, XPS and STM

    SciTech Connect

    Batteas, J.D. |

    1995-06-01

    Defects on surfaces such as steps play an important role in surface chemistry. In order to obtain an understanding of the influence of steps in surface chemical reactions, the structure and reactivity of small molecules (O{sub 2}, CO, H{sub 2}S, and C{sub 2}H{sub 4}) on atomically stepped surfaces of RH and Pt have been investigated. The detailed structures of CO and oxygen bonded to the Rh(110) surface were determined. The CO molecules bond near the short bridge sites with the CO molecular axis tilted approximately 24{degree} from the surface normal. Oxygen atoms are bound asymmetrically in the 3-fold fcc hollow-sites to the (111) facets of the steps. The interactions of CO and oxygen on the Rh(311) surface were examined. The reaction of CO with the ordered phases of O shows two distinct reaction channels, a low temperature reaction limited channel (200 K) and a high temperature diffusion limited channel (350 K). Models of the reaction geometry and dynamics are proposed. The thermal decomposition of ethylene was examined on the Rh(311) surface. The stable decomposition species (C{sub 2}H, CH and C{sub 2}) are formed near 300 K, approximately 100 K lower on the stepped Rh(311) than on the flatter Rh(111) surface. The formation of these species at lower temperatures is attributed to the stepped nature of the surface. Finally, in situ STM was used to examine surface structural changes of a stepped Pt(111) crystal under coadsorption of sulfur and CO. This is the first direct evidence for a new mechanism by which a surface covered with an unreactive, strongly chemisorbed overlayer can form new sites, for bonding and reactions to occur, by massive surface restructuring at the step edges. This new surface phenomenon answers some of the puzzles of metal surface catalysis and its implications are described. 278 refs.

  16. The structure of N2 adsorbed on the rumpled NaCl(100) surface—A combined LEED and DFT-D study

    NASA Astrophysics Data System (ADS)

    Vogt, Jochen

    2012-11-01

    The structure of N2 physisorbed on the NaCl(100) single crystal surface is investigated by means of quantitative low-energy electron diffraction (LEED) in combination with dispersion corrected density functional theory (DFT-D). In the temperature range between 20 K and 45 K, a p(1 × 1) structure is observed in the LEED experiment. According to the structure analysis based on the measured diffraction spot intensity profiles, the N2 molecules are adsorbed over the topmost Na+ ions. The experimental distance of the lower nitrogen to the Na+ ion underneath is (2.55 ± 0.07) Å; the corresponding DFT-D value is 2.65 Å. The axes of the molecules are tilted (26 ± 3)° with respect to the surface normal, while in the zero Kelvin optimum structure from DFT-D, the molecules have a perpendicular orientation. The experimental monolayer heat of adsorption, deduced from a Fowler-Guggenheim kinetic model of adsorption is -(13.6 ± 1.6) kJ mol-1, including a lateral molecule-molecule interaction energy of -(2.0 ± 0.4) kJ mol-1. The zero Kelvin adsorption energy from DFT-D, including zero point energy correction, is -15.6 kJ mol-1; the molecule-molecule interaction is -2.4 kJ mol-1. While the rumpling of the NaCl(100) surface is unchanged upon adsorption of nitrogen, the best-fit root mean square thermal displacements of the ions in the topmost substrate layer are significantly reduced.

  17. The structure of N2 adsorbed on the rumpled NaCl(100) surface--a combined LEED and DFT-D study.

    PubMed

    Vogt, Jochen

    2012-11-01

    The structure of N(2) physisorbed on the NaCl(100) single crystal surface is investigated by means of quantitative low-energy electron diffraction (LEED) in combination with dispersion corrected density functional theory (DFT-D). In the temperature range between 20 K and 45 K, a p(1 × 1) structure is observed in the LEED experiment. According to the structure analysis based on the measured diffraction spot intensity profiles, the N(2) molecules are adsorbed over the topmost Na(+) ions. The experimental distance of the lower nitrogen to the Na(+) ion underneath is (2.55 ± 0.07) Å; the corresponding DFT-D value is 2.65 Å. The axes of the molecules are tilted (26 ± 3)° with respect to the surface normal, while in the zero Kelvin optimum structure from DFT-D, the molecules have a perpendicular orientation. The experimental monolayer heat of adsorption, deduced from a Fowler-Guggenheim kinetic model of adsorption is -(13.6 ± 1.6) kJ mol(-1), including a lateral molecule-molecule interaction energy of -(2.0 ± 0.4) kJ mol(-1). The zero Kelvin adsorption energy from DFT-D, including zero point energy correction, is -15.6 kJ mol(-1); the molecule-molecule interaction is -2.4 kJ mol(-1). While the rumpling of the NaCl(100) surface is unchanged upon adsorption of nitrogen, the best-fit root mean square thermal displacements of the ions in the topmost substrate layer are significantly reduced. PMID:23145740

  18. Influence of surface chemistry on the structural organization of monomolecular protein layers adsorbed to functionalized aqueous interfaces.

    PubMed Central

    Lösche, M; Piepenstock, M; Diederich, A; Grünewald, T; Kjaer, K; Vaknin, D

    1993-01-01

    The molecular organization of streptavidin (SA) bound to aqueous surface monolayers of biotin-functionalized lipids and binary lipid mixtures has been investigated with neutron reflectivity and electron and fluorescence microscopy. The substitution of deuterons (2H) for protons (1H), both in subphase water molecules and in the alkyl chains of the lipid surface monolayer, was utilized to determine the interface structure on the molecular length scale. In all cases studied, the protein forms monomolecular layers underneath the interface with thickness values of approximately 40 A. A systematic dependence of the structural properties of such self-assembled SA monolayers on the surface chemistry was observed: the lateral protein density depends on the length of the spacer connecting the biotin moiety and its hydrophobic anchor. The hydration of the lipid head groups in the protein-bound state depends on the dipole moment density at the interface. Images FIGURE 1 FIGURE 2 FIGURE 3 FIGURE 5 FIGURE 11 FIGURE 12 FIGURE A1 PMID:8298041

  19. Effects of atomic geometry and electronic structure of platinum surfaces on molecular adsorbates studied by gap-mode SERS.

    PubMed

    Hu, Jian; Tanabe, Masahiro; Sato, Jun; Uosaki, Kohei; Ikeda, Katsuyoshi

    2014-07-23

    Surface enhanced Raman scattering (SERS) spectra of organic monolayers were measured on various types of polycrystalline and single crystalline Pt substrates with nanometric or atomic surface features, including heteroepitaxial Pt monolayers, using sphere-plane type nanogap structures. Although atomic geometry and electronic structures of a metal surface significantly influence metal-molecule interactions, such effects are often hindered in conventional SERS measured on a roughened surface because of the spectral information averaging at various adsorption sites. In this study, the use of atomically defined Pt surfaces revealed detailed surface effects; the observed preferential adsorption geometry on each surface was well explained by atomic surface arrangements. The peak shift of the intramolecular vibration in the anchor group was in good agreement with the variation of the d-band center of Pt substrates. Moreover, in electrochemical SERS study the Stark shift of an extramolecular vibrational mode at around 400 cm(-1), which is not accessible in infrared absorption spectroscopy, was monitored on an atomically defined heteroepitaxial Pt monolayer electrode. PMID:24802029

  20. New experimental constraints on polarizability corrections to hydrogen hyperfine structure

    SciTech Connect

    Vahagn Nazaryan; Carl Carlson; Keith Griffioen

    2006-04-01

    We present a state-of-the-art evaluation of the polarizability corrections--the inelastic nucleon corrections--to the hydrogen ground-state hyperfine splitting using analytic fits to the most recent data. We find a value {Delta}{sub pol} = 1.3 {+-} 0.3 ppm. This is 1-2 ppm smaller than the value of {Delta}{sub pol} deduced using hyperfine splitting data and elastic nucleon corrections obtained from modern form factor fits.

  1. Hydrogen decoration of radiation damage induced defect structures

    SciTech Connect

    Kirnstötter, S.; Faccinelli, M.; Hadley, P.; Schustereder, W.; Laven, J. G.; Schulze, H.-J.

    2014-02-21

    The defect complexes that are formed when protons with energies in the MeV-range were implanted into high-purity silicon were investigated. After implantation, the samples were annealed at 400 °C or 450 °C for times ranging between 15 minutes and 30 hours. The resistivity of the samples was then analyzed by Spreading Resistance Profiling (SRP). The resistivity shows minima where there is a high carrier concentration and it is possible to extract the carrier concentration from the resistivity data. Initially, there is a large peak in the carrier concentration at the implantation depth where most of the hydrogen is concentrated. For longer anneals, this peak widens as the hydrogen diffuses away from the implantation depth. Following the changes in resistivity as a function of annealing time allows us to characterize the diffusion of hydrogen through these samples. Differences in the diffusion were observed depending on whether the silicon was grown by the magnetic Czochralski (m:Cz) method or the Float zone (Fz) method.

  2. Electronic structures of hydrogen functionalized carbon nanotube: Density functional theory (DFT) study

    NASA Astrophysics Data System (ADS)

    Tachikawa, Hiroto; Iyama, Tetsuji; Kawabata, Hiroshi

    2016-05-01

    Electronic structures and formation mechanism of hydrogen functionalized carbon nanotube (CNT) have been investigated by means of density functional theory (DFT) method. The mechanism of hydrogen addition reaction to the CNT surface was also investigated. Pure and boron-nitrogen (BN) substituted CNT (denoted by CNT and BN-CNT, respectively) were examined as the carbon nanotubes. It was found that the additions of hydrogen atom to B (boron atom) and C (carbon atom) sites of BN-CNT proceed without activation barrier, whereas the hydrogenation of N (nitrogen atom) site needs the activation energy. The electronic states of hydrogen functionalized CNT and BN-CNT were discussed on the basis of theoretical results.

  3. Thermodynamic stability of hydrogen hydrates of ice Ic and II structures

    NASA Astrophysics Data System (ADS)

    Hakim, Lukman; Koga, Kenichiro; Tanaka, Hideki

    2010-10-01

    The occupancy of hydrogen inside the voids of ice Ic and ice II, which gives two stable hydrogen hydrate compounds at high pressure and temperature, has been examined using a hybrid grand-canonical Monte Carlo simulation in wide ranges of pressure and temperature. The simulation reproduces the maximum hydrogen-to-water molar ratio and gives a detailed description on the hydrogen influence toward the stability of ice structures. A simple theoretical model, which reproduces the simulation results, provides a global phase diagram of two-component system in which the phase transitions between various phases can be predicted as a function of pressure, temperature, and chemical composition. A relevant thermodynamic potential and statistical-mechanical ensemble to describe the filled-ice compounds are discussed, from which one can derive two important properties of hydrogen hydrate compounds: the isothermal compressibility and the quantification of thermodynamic stability in term of the chemical potential.

  4. Hydrogen-induced effects on the CVD growth of high-quality graphene structures.

    PubMed

    Zhang, Xianfeng; Ning, Jing; Li, Xianglong; Wang, Bin; Hao, Long; Liang, Minghui; Jin, Meihua; Zhi, Linjie

    2013-09-21

    In this work, the hydrogen-induced effects on the CVD growth of high-quality graphene have been systematically studied by regulating the growth parameters mainly related to hydrogen. Experimental results demonstrate that under a high hydrogen flow rate, the competitive etching effect during the growth process is more prominent and even shows macroscopic selectivity. Based on these understandings, the hexagonal graphene domains with diverse edge modalities are controllably synthesized on a large scale by elaborately managing the competitive etching effect of hydrogen that existed during the formation of graphene. This study not only contributes to the understanding of the mechanism of CVD growth, especially the effects of hydrogen used in the system, but also provides a facile method to synthesize high-quality graphene structures with trimmed edge morphologies. PMID:23715011

  5. Measurements of the structure of an ionizing shock wave in a hydrogen-helium mixture.

    NASA Technical Reports Server (NTRS)

    Leibowitz, L. P.

    1973-01-01

    Shock structure during ionization of a hydrogen-helium mixture has been followed using hydrogen line and continuum emission measurements. A reaction scheme is proposed which includes hydrogen dissociation and a two-step excitation-ionization mechanism for hydrogen ionization by atom-atom and atom-electron collisions. Agreement has been achieved between numerical calculations and measurements of emission intensity as a function of time for shock velocities from 13 to 20 km/sec in a 0.208 H2-0.792 He mixture. The electron temperature was found to be significantly different from the heavy particle temperature during much of the ionization process. Similar time histories for H beta and continuum emission indicate upper level populations of hydrogen in equilibrium with the electron concentration during the relaxation process.

  6. Measurements of the structure of an ionizing shock wave in a hydrogen-helium mixture

    NASA Technical Reports Server (NTRS)

    Leibowitz, L. P.

    1972-01-01

    Shock structure during ionization of a hydrogen-helium mixture was studied using hydrogen line and continuum emission measurements. A reaction scheme is proposed which includes hydrogen dissociation and a two-step excitation-ionization mechanism for hydrogen ionization by atom-atom and atom-electron collisions. Agreement was achieved between numerical calculations and measurements of emission intensity as a function of time for shock velocities from 13 to 20 km/sec in a 0.208 H2 - 0.792 He mixture. The electron temperature was found to be significantly different from the heavy particle temperature during much of the ionization process. Similar time histories for H beta and continuum emission indicate upper level populations of hydrogen in equilibrium with the electron concentration during the relaxation process.

  7. Hydrogen bond cooperativity and the three-dimensional structures of water nonamers and decamers.

    PubMed

    Pérez, Cristóbal; Zaleski, Daniel P; Seifert, Nathan A; Temelso, Berhane; Shields, George C; Kisiel, Zbigniew; Pate, Brooks H

    2014-12-22

    Broadband rotational spectroscopy of water clusters produced in a pulsed molecular jet expansion has been used to determine the oxygen atom geometry in three isomers of the nonamer and two isomers of the decamer. The isomers for each cluster size have the same nominal geometry but differ in the arrangement of their hydrogen bond networks. The nearest neighbor OO distances show a characteristic pattern for each hydrogen bond network isomer that is caused by three-body effects that produce cooperative hydrogen bonding. The observed structures are the lowest energy cluster geometries identified by quantum chemistry and the experimental and theoretical OO distances are in good agreement. The cooperativity effects revealed by the hydrogen bond OO distance variations are shown to be consistent with a simple model for hydrogen bonding in water that takes into account the cooperative and anticooperative bonding effects of nearby water molecules. PMID:25348841

  8. HYDROGEN SEPARATION MEMBRANES

    SciTech Connect

    Donald P. McCollor; John P. Kay

    1999-08-01

    A likely membrane for future testing of high-temperature hydrogen separation from a gasification product stream was targeted as an inorganic analog of a dense-metal membrane, where the hydrogen would dissolve into and diffuse through the membrane structure. An amorphous membrane such as zinc sulfide appeared to be promising. Previously, ZnS film coating tests had been performed using an electron-beam vacuum coating instrument, with zinc films successfully applied to glass substrates. The coatings appeared relatively stable in air and in a simple simulated gasification atmosphere at elevated temperature. Because the electron-beam coating instrument suffered irreparable breakdown, several alternative methods were tested in an effort to produce a nitrogen-impermeable, hydrogen-permeable membrane on porous sintered steel substrates. None of the preparation methods proved successful in sealing the porous substrate against nitrogen gas. To provide a nitrogen-impermeable ZnS material to test for hydrogen permeability, two ZnS infrared sample windows were purchased. These relatively thick ''membranes'' did not show measurable permeation of hydrogen, either due to lack of absorption or a negligible permeation rate due to their thickness. To determine if hydrogen was indeed adsorbed, thermogravimetric and differential thermal analyses tests were performed on samples of ZnS powder. A significant uptake of hydrogen gas occurred, corresponding to a maximum of 1 mole H{sub 2} per 1 mole ZnS at a temperature of 175 C. The hydrogen remained in the material at ambient temperature in a hydrogen atmosphere, but approximately 50% would be removed in argon. Reheating in a hydrogen atmosphere resulted in no additional hydrogen uptake. Differential scanning calorimetry indicated that the hydrogen uptake was probably due to the formation of a zinc-sulfur-hydrogen species resulting in the formation of hydrogen sulfide. The zinc sulfide was found to be unstable above approximately 200 C

  9. Hydrophobic Porous Material Adsorbs Small Organic Molecules

    NASA Technical Reports Server (NTRS)

    Sharma, Pramod K.; Hickey, Gregory S.

    1994-01-01

    Composite molecular-sieve material has pore structure designed specifically for preferential adsorption of organic molecules for sizes ranging from 3 to 6 angstrom. Design based on principle that contaminant molecules become strongly bound to surface of adsorbent when size of contaminant molecules is nearly same as that of pores in adsorbent. Material used to remove small organic contaminant molecules from vacuum systems or from enclosed gaseous environments like closed-loop life-support systems.

  10. Mesoporous Silica: A Suitable Adsorbent for Amines

    PubMed Central

    2009-01-01

    Mesoporous silica with KIT-6 structure was investigated as a preconcentrating material in chromatographic systems for ammonia and trimethylamine. Its adsorption capacity was compared to that of existing commercial materials, showing its increased adsorption power. In addition, KIT-6 mesoporous silica efficiently adsorbs both gases, while none of the employed commercial adsorbents did. This means that KIT-6 Mesoporous silica may be a good choice for integrated chromatography/gas sensing micro-devices. PMID:20628459

  11. Promotion of CO oxidation on PdO(101) by adsorbed H2O

    NASA Astrophysics Data System (ADS)

    Choi, Juhee; Pan, Li; Mehar, Vikram; Zhang, Feng; Asthagiri, Aravind; Weaver, Jason F.

    2016-08-01

    We investigated the influence of adsorbed H2O on the oxidation of CO on PdO(101) using temperature programmed reaction spectroscopy (TPRS), reflection absorption infrared spectroscopy (RAIRS) and density functional theory (DFT) calculations. We find that water inhibits CO adsorption on PdO(101) by site blocking, but also provides a more facile pathway for CO oxidation compared with the bare oxide surface. In the presence of adsorbed H2O, the oxidation of CO on PdO(101) produces a CO2 TPRS peak that is centered at a temperature ~ 50 K lower than the main CO2 TPRS peak arising from CO oxidation on clean PdO(101) (~ 330 vs. 380 K). RAIRS shows that CO continues to adsorb on atop-Pd sites of PdO(101) when H2O is co-adsorbed, and provides no evidence of other reactive intermediates. DFT calculations predict that the CO oxidation mechanism follows the same steps for CO adsorbed on PdO(101) with and without co-adsorbed H2O, wherein an atop-CO species recombines with an oxygen atom from the oxide surface lattice. According to DFT, hydrogen bonding interactions with adsorbed H2O species stabilize the carboxyl-like transition structure and intermediate that result from the initial recombination of CO and O on the PdO(101) surface. This stabilization lowers the energy barrier for CO oxidation on PdO(101) by ~ 10 kJ/mol, in good agreement with our experimental estimate.

  12. HBNG: Graph theory based visualization of hydrogen bond networks in protein structures

    PubMed Central

    Tiwari, Abhishek; Tiwari, Vivek

    2007-01-01

    HBNG is a graph theory based tool for visualization of hydrogen bond network in 2D. Digraphs generated by HBNG facilitate visualization of cooperativity and anticooperativity chains and rings in protein structures. HBNG takes hydrogen bonds list files (output from HBAT, HBEXPLORE, HBPLUS and STRIDE) as input and generates a DOT language script and constructs digraphs using freeware AT and T Graphviz tool. HBNG is useful in the enumeration of favorable topologies of hydrogen bond networks in protein structures and determining the effect of cooperativity and anticooperativity on protein stability and folding. HBNG can be applied to protein structure comparison and in the identification of secondary structural regions in protein structures. Availability Program is available from the authors for non-commercial purposes. PMID:18084648

  13. Structure and hydrogen bond dynamics of water-dimethyl sulfoxide mixtures by computer simulations

    NASA Astrophysics Data System (ADS)

    Luzar, Alenka; Chandler, David

    1993-05-01

    We have used two different force field models to study concentrated dimethyl sulfoxide (DMSO)-water solutions by molecular dynamics. The results of these simulations are shown to compare well with recent neutron diffraction experiments using H/D isotope substitution [A. K. Soper and A. Luzar, J. Chem. Phys. 97, 1320 (1992)]. Even for the highly concentrated 1 DMSO : 2 H2O solution, the water hydrogen-hydrogen radial distribution function, gHH(r), exhibits the characteristic tetrahedral ordering of water-water hydrogen bonds. Structural information is further obtained from various partial atom-atom distribution functions, not accessible experimentally. The behavior of water radial distribution functions, gOO(r) and gOH(r) indicate that the nearest neighbor correlations among remaining water molecules in the mixture increase with increasing DMSO concentration. No preferential association of methyl groups on DMSO is detected. The pattern of hydrogen bonding and the distribution of hydrogen bond lifetimes in the simulated mixtures is further investigated. Molecular dynamics results show that DMSO typically forms two hydrogen bonds with water molecules. Hydrogen bonds between DMSO and water molecules are longer lived than water-water hydrogen bonds. The hydrogen bond lifetimes determined by reactive flux correlation function approach are about 5 and 3 ps for water-DMSO and water-water pairs, respectively, in 1 DMSO : 2 H2O mixture. In contrast, for pure water, the hydrogen bond lifetime is about 1 ps. We discuss these times in light of experimentally determined rotational relaxation times. The relative values of the hydrogen bond lifetimes are consistent with a statistical (i.e., transition state theory) interpretation.

  14. Hydrogen storage in a chemical bond stabilized Co9S8-graphene layered structure

    NASA Astrophysics Data System (ADS)

    Qin, Wei; Han, Lu; Bi, Hai; Jian, Jiahuang; Wu, Xiaohong; Gao, Peng

    2015-11-01

    With the high energy ball milling method, a Co9S8-decorated reduced graphene oxide (RGO) composite, which shows excellent hydrogen storage capacity, has been successfully fabricated with a well-organized layered structure. Moreover, the stabilized mechanism of the well-organized layered structure is investigated and attributed to the strong interactions between Co9S8 and defective RGO. The C-S bond interaction is identified and the hydrogen storage process is also studied with different analysis methods. Finally, an optimized Co9S8 to RGO weight ratio of 6 : 1 shows excellent electrochemical performances in terms of the excellent cycling stability and competitive hydrogen storage capacity of 4.86 wt%.With the high energy ball milling method, a Co9S8-decorated reduced graphene oxide (RGO) composite, which shows excellent hydrogen storage capacity, has been successfully fabricated with a well-organized layered structure. Moreover, the stabilized mechanism of the well-organized layered structure is investigated and attributed to the strong interactions between Co9S8 and defective RGO. The C-S bond interaction is identified and the hydrogen storage process is also studied with different analysis methods. Finally, an optimized Co9S8 to RGO weight ratio of 6 : 1 shows excellent electrochemical performances in terms of the excellent cycling stability and competitive hydrogen storage capacity of 4.86 wt%. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr06116d

  15. Structure and hydrogen adsorption properties in low density nanoporous carbons from simulations

    SciTech Connect

    Peng, L.; Morris, James R

    2012-01-01

    We systematically model the hydrogen adsorption in nanoporous carbons over a wide range of carbon bulk densities (0.6 - 2.4 g/cm3) by using tight binding molecular dynamics simulations for the carbon structures and thermodynamics calculations of the hydrogen adsorption. The resulting structures are in good agreement with the experimental data of ultra-microporous carbon (UMC), a wood-based activated carbon, as indicated by comparisons of the microstructure at atomic level, pair distribution function, and pore size distribution. The hydrogen adsorption calculations in carbon structures demonstrate both a promising hydrogen storage capacity (excess uptake of 1.33 wt% at 298K and 5 MPa, for carbon structures at the lower range of densities) and a reasonable heat of adsorption (12-22 kJ/mol). This work demonstrates that increasing the heat of adsorption does not necessarily increase the hydrogen uptake. In fact, the available adsorption volume is as important as the isosteric heat of adsorption for hydrogen storage in nanoporous carbons.

  16. An X-ray Absorption Fine Structure study of Au adsorbed onto the non-metabolizing cells of two soil bacterial species

    SciTech Connect

    Song, Zhen; Kenney, Janice P.L.; Fein, Jeremy B.; Bunker, Bruce A.

    2015-02-09

    Gram-positive and Gram-negative bacterial cells can remove Au from Au(III)-chloride solutions, and the extent of removal is strongly pH dependent. In order to determine the removal mechanisms, X-ray Absorption Fine Structure (XAFS) spectroscopy experiments were conducted on non-metabolizing biomass of Bacillus subtilis and Pseudomonas putida with fixed Au(III) concentrations over a range of bacterial concentrations and pH values. X-ray Absorption Near Edge Structure (XANES) and Extended X-ray Absorption Fine Structure (EXAFS) data on both bacterial species indicate that more than 90% of the Au atoms on the bacterial cell walls were reduced to Au(I). In contrast to what has been observed for Au(III) interaction with metabolizing bacterial cells, no Au(0) or Au-Au nearest neighbors were observed in our experimental systems. All of the removed Au was present as adsorbed bacterial surface complexes. For both species, the XAFS data suggest that although Au-chloride-hydroxide aqueous complexes dominate the speciation of Au in solution, Au on the bacterial cell wall is characterized predominantly by binding of Au atoms to sulfhydryl functional groups and amine and/or carboxyl functional groups, and the relative importance of the sulfhydryl groups increases with increasing pH and with decreasing Au loading. The XAFS data for both microorganism species suggest that adsorption is the first step in the formation of Au nanoparticles by bacteria, and the results enhance our ability to account for the behavior of Au in bacteria-bearing geologic systems.

  17. An X-ray Absorption Fine Structure study of Au adsorbed onto the non-metabolizing cells of two soil bacterial species

    NASA Astrophysics Data System (ADS)

    Song, Zhen; Kenney, Janice P. L.; Fein, Jeremy B.; Bunker, Bruce A.

    2012-06-01

    Gram-positive and Gram-negative bacterial cells can remove Au from Au(III)-chloride solutions, and the extent of removal is strongly pH dependent. In order to determine the removal mechanisms, X-ray Absorption Fine Structure (XAFS) spectroscopy experiments were conducted on non-metabolizing biomass of Bacillus subtilis and Pseudomonas putida with fixed Au(III) concentrations over a range of bacterial concentrations and pH values. X-ray Absorption Near Edge Structure (XANES) and Extended X-ray Absorption Fine Structure (EXAFS) data on both bacterial species indicate that more than 90% of the Au atoms on the bacterial cell walls were reduced to Au(I). In contrast to what has been observed for Au(III) interaction with metabolizing bacterial cells, no Au(0) or Au-Au nearest neighbors were observed in our experimental systems. All of the removed Au was present as adsorbed bacterial surface complexes. For both species, the XAFS data suggest that although Au-chloride-hydroxide aqueous complexes dominate the speciation of Au in solution, Au on the bacterial cell wall is characterized predominantly by binding of Au atoms to sulfhydryl functional groups and amine and/or carboxyl functional groups, and the relative importance of the sulfhydryl groups increases with increasing pH and with decreasing Au loading. The XAFS data for both microorganism species suggest that adsorption is the first step in the formation of Au nanoparticles by bacteria, and the results enhance our ability to account for the behavior of Au in bacteria-bearing geologic systems.

  18. Control of changes in the defect structure of titanium saturated with hydrogen

    NASA Astrophysics Data System (ADS)

    Larionov, V. V.; Lider, A. M.; Laptev, R. S.

    2016-06-01

    The hydrogenated samples of technical titanium were investigated using the EPA method and the measurements of the thermal electromotive force for these samples saturated with a different amount of hydrogen. The structure of the hydrogenated samples was studied by the X-ray diffraction method. The results have shown that the hydrogenated titanium structure starts changing at the same time, depending on the amount of added hydrogen. The intensity of the annihilation process increases with the increase in the hydrogen concentration in a-titanium up to the values of 4% wt and does not change up to the values of 5% wt (α + δ) - titanium. At the same time, the value of the thermal electromotive force decreases in this range of values. The annihilation intensity is stabilized for the values of 5% wt, and the value of the thermal electromotive force is increased. The inflection point for the thermal electromotive force versus the hydrogen concentration corresponds to the formation of δ - hydrides. The increase in the positron lifetime starts in the concentration range of 6-8% and moves to the stable level up to the concentrations of 21-22%. In this range, there is a transition from the (α + β) to the (α + δ) phase. The lifetime of positrons and the number of defects are increased, the value of the thermal electromotive force is reduced (up to the concentration of 24%), then there is a stabilization mode for all these parameters up to the values 32% wt.

  19. Hydrogen storage in graphite nanofibers

    SciTech Connect

    Park, C.; Tan, C.D.; Hidalgo, R.; Baker, R.T.K.; Rodriguez, N.M.

    1998-08-01

    Graphite nanofibers (GNF) are a type of material that is produced by the decomposition of carbon containing gases over metal catalyst particles at temperatures around 600 C. These molecularly engineered structures consist of graphene sheets perfectly arranged in a parallel, perpendicular or at angle orientation with respect to the fiber axis. The most important feature of the material is that only edges are exposed. Such an arrangement imparts the material with unique properties for gas adsorption because the evenly separated layers constitute the most ordered set of nanopores that can accommodate an adsorbate in the most efficient manner. In addition, the non-rigid pore walls can also expand so as to accommodate hydrogen in a multilayer conformation. Of the many varieties of structures that can be produced the authors have discovered that when gram quantities of a selected number of GNF are exposed to hydrogen at pressures of {approximately} 2,000 psi, they are capable of adsorbing and storing up to 40 wt% of hydrogen. It is believed that a strong interaction is established between hydrogen and the delocalized p-electrons present in the graphite layers and therefore a new type of chemistry is occurring within these confined structures.

  20. Structural and energy properties of interstitial molecular hydrogen in single-crystal silicon

    NASA Astrophysics Data System (ADS)

    Melnikov, V. V.

    2015-06-01

    The structural and energy characteristics of interstitial molecular hydrogen in single-crystal silicon are theoretically studied. The dependence of the potential energy of the system on the position and orientation of the interstitial defect is investigated, and the mechanism of interaction of a hydrogen molecule with a silicon crystal is considered. A three-dimensional model is employed to calculate the energy spectrum of H2 in Si, and the obtained dispersion law is analyzed.

  1. Structural and energy properties of interstitial molecular hydrogen in single-crystal silicon

    SciTech Connect

    Melnikov, V. V.

    2015-06-15

    The structural and energy characteristics of interstitial molecular hydrogen in single-crystal silicon are theoretically studied. The dependence of the potential energy of the system on the position and orientation of the interstitial defect is investigated, and the mechanism of interaction of a hydrogen molecule with a silicon crystal is considered. A three-dimensional model is employed to calculate the energy spectrum of H{sub 2} in Si, and the obtained dispersion law is analyzed.

  2. TEMPEST code simulations of hydrogen distribution in reactor containment structures. Final report

    SciTech Connect

    Trent, D.S.; Eyler, L.L.

    1985-03-01

    The mass transport version of the TEMPEST computer code was used to simulate hydrogen distribution in geometric configurations relevant to reactor containment structures. Predicted results of Battelle-Frankfurt hydrogen distribution tests 1 to 6, and 12 are presented. Agreement between predictions and experimental data is good. Best agreement is obtained using the k-epsilon turbulence model in TEMPEST in flow cases where turbulent diffusion and stable stratification are dominant mechanisms affecting transport. The code's general analysis capabilities are summarized.

  3. Partially hydrogenated and fluorinated graphene: Structure, roughness, and negative thermal expansion

    NASA Astrophysics Data System (ADS)

    Neek-Amal, M.; Peeters, F. M.

    2015-10-01

    The structural properties of partially hydrogenated and fluorinated graphene with different percentages of H/F atoms are investigated using molecular dynamics simulations based on reactive force field (ReaxFF) potentials. We found that the roughness of graphene varies with the percentage (p ) of H or F and in both cases is maximal around p =50 % . Similar results were obtained for partially oxidized graphene. The two-dimensional area size of partially fluorinated and hydrogenated graphene exhibits a local minimum around p =35 % coverage. The lattice thermal contraction in partially functionalized graphene is found to be one order of magnitude larger than that of fully covered graphene. We also show that the armchair structure for graphene oxide (similar to the structure of fully hydrogenated and fluorinated graphene) is unstable. Our results show that the structure of partially functionalized graphene changes nontrivially with the C : H and C : F ratio as well as with temperature.

  4. Regenerative adsorbent heat pump

    NASA Technical Reports Server (NTRS)

    Jones, Jack A. (Inventor)

    1991-01-01

    A regenerative adsorbent heat pump process and system is provided which can regenerate a high percentage of the sensible heat of the system and at least a portion of the heat of adsorption. A series of at least four compressors containing an adsorbent is provided. A large amount of heat is transferred from compressor to compressor so that heat is regenerated. The process and system are useful for air conditioning rooms, providing room heat in the winter or for hot water heating throughout the year, and, in general, for pumping heat from a lower temperature to a higher temperature.

  5. Doped penta-graphene and hydrogenation of its related structures: a structural and electronic DFT-D study.

    PubMed

    Quijano-Briones, J J; Fernández-Escamilla, H N; Tlahuice-Flores, A

    2016-06-21

    The structure of penta-graphene (penta-C), an irregular pentagonal two-dimensional (2D) structure, has been predicted recently. In this communication we carried out a dispersion-corrected density functional theory (DFT-D) study of the penta-C doped with Si, Ge and Sn atoms and its related hydrogenated penta-C structures (H-penta-C-X). We predict various new structures as thermally stable based on Born-Oppenheimer molecular dynamics (BOMD) calculations. Moreover, their dynamical stability is attested by phonon dispersions spectra. In general, we found that the bandgap value of doped structures reduces, while H-penta-C-X show large bandgap values. This feature can be exploited for potential uses of hydrogenated doped-penta-C structures as dielectric layers in electronic devices. PMID:27220553

  6. Hydrogen-bonded glycine-HCN complexes in gas phase: structure, energetics, electric properties and cooperativity

    NASA Astrophysics Data System (ADS)

    Machado da Silva, Arnaldo; Chakrabarty, Sumana; Chaudhuri, Puspitapallab

    2015-03-01

    Twelve hydrogen-bonded complexes of glycine and hydrogen cyanide have been studied using high-level quantum-chemical calculations in gas phase. In particular, six 1:1 glycine-HCN dimers and six 1:2 glycine-HCN trimers have been considered. Besides the characteristics of the hydrogen bonds and their effect on molecular structure and energetics, several molecular electric properties have been calculated utilising two different models: MP2/6-31++G(d,p) and DFT-B3LYP/6-31++G(d,p). Although the structural parameters calculated by the two models are similar, equilibrium electronic energies of the clusters show model dependence. The lowest energy dimer is same in both the models which is ca. 3.0 kcal/mol more stable than the highest energy dimer. However, the lowest energy trimer is different in two methods. The energetic difference of stability between the highest and lowest trimer is 4.2 kcal/mol (4.4 kcal/mol) at an MP2 (B3LYP) level of calculation. The bond angles of glycine, in particular, are quite sensitive to the hydrogen-bond formation. Four out of six trimers are found to be strongly cooperative in both the models. Significant changes of dipole moments and polarisabilities of isolated glycine and hydrogen cyanide are observed due to the formation of hydrogen bonding. The Rayleigh scattering intensities of all clusters are much larger than those of their constituent monomers.

  7. Local atomic structure modulations activate metal oxide as electrocatalyst for hydrogen evolution in acidic water

    PubMed Central

    Li, Yu Hang; Liu, Peng Fei; Pan, Lin Feng; Wang, Hai Feng; Yang, Zhen Zhong; Zheng, Li Rong; Hu, P.; Zhao, Hui Jun; Gu, Lin; Yang, Hua Gui

    2015-01-01

    Modifications of local structure at atomic level could precisely and effectively tune the capacity of materials, enabling enhancement in the catalytic activity. Here we modulate the local atomic structure of a classical but inert transition metal oxide, tungsten trioxide, to be an efficient electrocatalyst for hydrogen evolution in acidic water, which has shown promise as an alternative to platinum. Structural analyses and theoretical calculations together indicate that the origin of the enhanced activity could be attributed to the tailored electronic structure by means of the local atomic structure modulations. We anticipate that suitable structure modulations might be applied on other transition metal oxides to meet the optimal thermodynamic and kinetic requirements, which may pave the way to unlock the potential of other promising candidates as cost-effective electrocatalysts for hydrogen evolution in industry. PMID:26286479

  8. Local atomic structure modulations activate metal oxide as electrocatalyst for hydrogen evolution in acidic water.

    PubMed

    Li, Yu Hang; Liu, Peng Fei; Pan, Lin Feng; Wang, Hai Feng; Yang, Zhen Zhong; Zheng, Li Rong; Hu, P; Zhao, Hui Jun; Gu, Lin; Yang, Hua Gui

    2015-01-01

    Modifications of local structure at atomic level could precisely and effectively tune the capacity of materials, enabling enhancement in the catalytic activity. Here we modulate the local atomic structure of a classical but inert transition metal oxide, tungsten trioxide, to be an efficient electrocatalyst for hydrogen evolution in acidic water, which has shown promise as an alternative to platinum. Structural analyses and theoretical calculations together indicate that the origin of the enhanced activity could be attributed to the tailored electronic structure by means of the local atomic structure modulations. We anticipate that suitable structure modulations might be applied on other transition metal oxides to meet the optimal thermodynamic and kinetic requirements, which may pave the way to unlock the potential of other promising candidates as cost-effective electrocatalysts for hydrogen evolution in industry. PMID:26286479

  9. Hydrogen Diffusion Behavior in Titanium-Chromium Hydrides with Laves Structures

    SciTech Connect

    Bowman Jr., R.C.; Craft, B.D.; Attalla, A.; Johnson, J.R.

    1981-03-31

    Extensive NMR measurements of the proton relaxation times have been performed on low (i.e., alpha-phase) and intermediate (i.e., alpha'-phase) hydrogen concentrations in TiCr{sub}2H{sub}x with both the hexagonal Cl4 and cubic Cl5 Laves structures. The relaxation times indicate rapid diffusion rates above 200 K for all the TiCr{sub}2H{sub}x phases; however, large differences in the diffusion activation energies are observed. This behavior is associated with the hydrogen interstitial site occupancies and diffusion pathways becoming restricted in the Cl4 structure.

  10. Structure dependent hydrogen induced etching features of graphene crystals

    NASA Astrophysics Data System (ADS)

    Thangaraja, Amutha; Shinde, Sachin M.; Kalita, Golap; Papon, Remi; Sharma, Subash; Vishwakarma, Riteshkumar; Sharma, Kamal P.; Tanemura, Masaki

    2015-06-01

    H2 induced etching of graphene is of significant interest to understand graphene growth process as well as to fabricate nanoribbons and various other structures. Here, we demonstrate the structure dependent H2 induced etching behavior of graphene crystals. We synthesized graphene crystals on electro-polished Cu foil by an atmospheric pressure chemical vapor deposition process, where some of the crystals showed hexagonal shaped snowflake-dendritic morphology. Significant differences in H2 induced etching behavior were observed for the snowflake-dendritic and regular graphene crystals by annealing in a gas mixture of H2 and Ar. The regular graphene crystals were etched anisotropically creating hexagonal holes with pronounced edges, while etching of all the dendritic crystals occurred from the branches of lobs creating symmetrical fractal structures. The etching behavior provides important clue of graphene nucleation and growth as well as their selective etching to fabricate well-defined structures for nanoelectronics.

  11. Influence of hydrogen oxidation kinetics on hydrogen environment embrittlement

    NASA Technical Reports Server (NTRS)

    Walter, R. J.; Kendig, M. W.; Meisels, A. P.

    1992-01-01

    Results are presented from experiments performed to determine the roles of hydrogen absorption and hydrogen electron transfer on the susceptibility of Fe- and Ni-base alloys to ambient-temperature hydroen embrittlement. An apparent independence is noted between hydrogen environment embrittlement and internal hydrogen embrittlement. The experiments were performed on Inconel 718, Incoloy 903, and A286. The electrochemical results obtained indicate that Inconel 718 either adsorbs hydrogen more rapidly and/or the electrochemical oxidation of the adsorbed hydrogen occurred more rapidly than in the other two materials.

  12. Extending the range of low energy electron diffraction (LEED) surface structure determination: Co-adsorbed molecules, incommensurate overlayers and alloy surface order studied by new video and electron counting LEED techniques

    SciTech Connect

    Ogletree, D.F.

    1986-11-01

    LEED multiple scattering theory is briefly summarized, and aspects of electron scattering with particular significance to experimental measurements such as electron beam coherence, instrument response and phonon scattering are analyzed. Diffuse LEED experiments are discussed. New techniques that enhance the power of LEED are described, including a real-time video image digitizer applied to LEED intensity measurements, along with computer programs to generate I-V curves. The first electron counting LEED detector using a ''wedge and strip'' position sensitive anode and digital electronics is described. This instrument uses picoampere incident beam currents, and its sensitivity is limited only by statistics and counting times. Structural results on new classes of surface systems are presented. The structure of the c(4 x 2) phase of carbon monoxide adsorbed on Pt(111) has been determined, showing that carbon monoxide molecules adsorb in both top and bridge sites, 1.85 +- 0.10 A and 1.55 +- 0.10 A above the metal surface, respectively. The structure of an incommensurate graphite overlayer on Pt(111) is analyzed. The graphite layer is 3.70 +- 0.05 A above the metal surface, with intercalated carbon atoms located 1.25 +- 0.10 A above hollow sites supporting it. The (2..sqrt..3 x 4)-rectangular phase of benzene and carbon monoxide coadsorbed on Pt(111) is analyzed. Benzene molecules adsorb in bridge sites parallel to and 2.10 +- 0.10 A above the surface. The carbon ring is expanded, with an average C-C bond length of 1.72 +- 0.15 A. The carbon monoxide molecules also adsorb in bridge sites. The structure of the (..sqrt..3 x ..sqrt..3) reconstruction on the (111) face of the ..cap alpha..-CuAl alloy has been determined.

  13. The effects of framework dynamics on the behavior of water adsorbed in the [Zn(l-L)(Cl)] and Co-MOF-74 metal-organic frameworks.

    PubMed

    Terranova, Zachary L; Paesani, Francesco

    2016-03-21

    The effects of framework flexibility on the structural and dynamical properties of water adsorbed in two prototypical metal-organic frameworks are investigated through molecular dynamics simulations. It is found that water molecules in the pores of a flexible model of [Zn(l-L)(Cl)] exhibit slower dynamics than when the framework is artificially held rigid in the simulations. In contrast, the water dynamics in Co-MOF-74 is predicted to be accelerated by the framework vibrations. The origin of this different behavior directly relates to how water interacts with the two frameworks, which, in turn, determines different hydrogen-bond patterns in the pores. While the first water molecules adsorbed in [Zn(l-L)(Cl)] donate a single hydrogen bond to the Zn-Cl groups and point the other hydrogen atom towards the center of the pore, water molecules adsorbed in Co-MOF-74 initially bind to the cobalt atoms of the framework via their oxygen atoms, thus leaving each molecule free to form two hydrogen bonds with additional molecules adsorbed at higher loading. The simulation results indicate that taking into account the framework flexibility in computer simulations is necessary for a quantitative modeling of adsorption and transport processes in metal-organic frameworks. PMID:26928975

  14. Structure sensitivity in the nonscalable regime explored via catalysed ethylene hydrogenation on supported platinum nanoclusters

    DOE PAGESBeta

    Crampton, Andrew S.; Rötzer, Marian D.; Ridge, Claron J.; Schweinberger, Florian F.; Heiz, Ueli; Yoon, Bokwon; Landman, Uzi

    2016-01-28

    The sensitivity, or insensitivity, of catalysed reactions to catalyst structure is a commonly employed fundamental concept. Here we report on the nature of nano-catalysed ethylene hydrogenation, investigated through experiments on size-selected Ptn (n=8-15) clusters soft-landed on magnesia and first-principles simulations, yielding benchmark information about the validity of structure sensitivity/insensitivity at the bottom of the catalyst size range. Both ethylene-hydrogenation-to-ethane and the parallel hydrogenation–dehydrogenation ethylidyne-producing route are considered, uncovering that at the <1 nm size-scale the reaction exhibits characteristics consistent with structure sensitivity, in contrast to structure insensitivity found for larger particles. The onset of catalysed hydrogenation occurs for Ptn (n≥10)more » clusters at T>150 K, with maximum room temperature reactivity observed for Pt13. Structure insensitivity, inherent for specific cluster sizes, is induced in the more active Pt13 by a temperature increase up to 400 K leading to ethylidyne formation. As a result, control of sub-nanometre particle size may be used for tuning catalysed hydrogenation activity and selectivity.« less

  15. A structural role for arginine in proteins: multiple hydrogen bonds to backbone carbonyl oxygens.

    PubMed

    Borders, C L; Broadwater, J A; Bekeny, P A; Salmon, J E; Lee, A S; Eldridge, A M; Pett, V B

    1994-04-01

    We propose that arginine side chains often play a previously unappreciated general structural role in the maintenance of tertiary structure in proteins, wherein the positively charged guanidinium group forms multiple hydrogen bonds to backbone carbonyl oxygens. Using as a criterion for a "structural" arginine one that forms 4 or more hydrogen bonds to 3 or more backbone carbonyl oxygens, we have used molecular graphics to locate arginines of interest in 4 proteins: Arg 180 in Thermus thermophilus manganese superoxide dismutase, Arg 254 in human carbonic anhydrase II, Arg 31 in Streptomyces rubiginosus xylose isomerase, and Arg 313 in Rhodospirillum rubrum ribulose-1,5-bisphosphate carboxylase/oxygenase. Arg 180 helps to mold the active site channel of superoxide dismutase, whereas in each of the other enzymes the structural arginine is buried in the "mantle" (i.e., inside, but near the surface) of the protein interior well removed from the active site, where it makes 5 hydrogen bonds to 4 backbone carbonyl oxygens. Using a more relaxed criterion of 3 or more hydrogen bonds to 2 or more backbone carbonyl oxygens, arginines that play a potentially important structural role were found in yeast enolase, Bacillus stearothermophilus glyceraldehyde-3-phosphate dehydrogenase, bacteriophage T4 and human lysozymes, Enteromorpha prolifera plastocyanin, HIV-1 protease, Trypanosoma brucei brucei and yeast triosephosphate isomerases, and Escherichia coli trp aporepressor (but not trp repressor or the trp repressor/operator complex).(ABSTRACT TRUNCATED AT 250 WORDS) PMID:8003972

  16. Structure sensitivity in the nonscalable regime explored via catalysed ethylene hydrogenation on supported platinum nanoclusters

    PubMed Central

    Crampton, Andrew S.; Rötzer, Marian D.; Ridge, Claron J.; Schweinberger, Florian F.; Heiz, Ueli; Yoon, Bokwon; Landman, Uzi

    2016-01-01

    The sensitivity, or insensitivity, of catalysed reactions to catalyst structure is a commonly employed fundamental concept. Here we report on the nature of nano-catalysed ethylene hydrogenation, investigated through experiments on size-selected Ptn (n=8–15) clusters soft-landed on magnesia and first-principles simulations, yielding benchmark information about the validity of structure sensitivity/insensitivity at the bottom of the catalyst size range. Both ethylene-hydrogenation-to-ethane and the parallel hydrogenation–dehydrogenation ethylidyne-producing route are considered, uncovering that at the <1 nm size-scale the reaction exhibits characteristics consistent with structure sensitivity, in contrast to structure insensitivity found for larger particles. The onset of catalysed hydrogenation occurs for Ptn (n≥10) clusters at T>150 K, with maximum room temperature reactivity observed for Pt13. Structure insensitivity, inherent for specific cluster sizes, is induced in the more active Pt13 by a temperature increase up to 400 K leading to ethylidyne formation. Control of sub-nanometre particle size may be used for tuning catalysed hydrogenation activity and selectivity. PMID:26817713

  17. Efficient direct solar-to-hydrogen conversion by in situ interface transformation of a tandem structure

    NASA Astrophysics Data System (ADS)

    May, Matthias M.; Lewerenz, Hans-Joachim; Lackner, David; Dimroth, Frank; Hannappel, Thomas

    2015-09-01

    Photosynthesis is nature's route to convert intermittent solar irradiation into storable energy, while its use for an industrial energy supply is impaired by low efficiency. Artificial photosynthesis provides a promising alternative for efficient robust carbon-neutral renewable energy generation. The approach of direct hydrogen generation by photoelectrochemical water splitting utilizes customized tandem absorber structures to mimic the Z-scheme of natural photosynthesis. Here a combined chemical surface transformation of a tandem structure and catalyst deposition at ambient temperature yields photocurrents approaching the theoretical limit of the absorber and results in a solar-to-hydrogen efficiency of 14%. The potentiostatically assisted photoelectrode efficiency is 17%. Present benchmarks for integrated systems are clearly exceeded. Details of the in situ interface transformation, the electronic improvement and chemical passivation are presented. The surface functionalization procedure is widely applicable and can be precisely controlled, allowing further developments of high-efficiency robust hydrogen generators.

  18. Structure of hydrogenous liquids: separation of coherent and incoherent cross sections using polarised neutrons

    NASA Astrophysics Data System (ADS)

    Stunault, A.; Vial, S.; Pusztai, L.; Cuello, G. J.; Temleitner, L.

    2016-04-01

    The determination of the coherent structure factor of hydrogenous liquids is very difficult: while X-rays are barely sensitive to hydrogen, neutrons results still lack accuracy due to the contamination of the scattering intensities by a huge spin-incoherent signal from the 1H atoms. Using polarised neutrons with polarisation analysis, one can experimentally separate the coherent and incoherent contributions to the scattered intensity. We present the upgrade of the D3 polarised hot neutron diffractometer at ILL to study hydrogenated liquids. We show first data obtained from a test sample of water and detail the data reduction leading to an unprecedented accuracy in the extraction of the coherent signal, representative of the structure.

  19. Efficient direct solar-to-hydrogen conversion by in situ interface transformation of a tandem structure.

    PubMed

    May, Matthias M; Lewerenz, Hans-Joachim; Lackner, David; Dimroth, Frank; Hannappel, Thomas

    2015-01-01

    Photosynthesis is nature's route to convert intermittent solar irradiation into storable energy, while its use for an industrial energy supply is impaired by low efficiency. Artificial photosynthesis provides a promising alternative for efficient robust carbon-neutral renewable energy generation. The approach of direct hydrogen generation by photoelectrochemical water splitting utilizes customized tandem absorber structures to mimic the Z-scheme of natural photosynthesis. Here a combined chemical surface transformation of a tandem structure and catalyst deposition at ambient temperature yields photocurrents approaching the theoretical limit of the absorber and results in a solar-to-hydrogen efficiency of 14%. The potentiostatically assisted photoelectrode efficiency is 17%. Present benchmarks for integrated systems are clearly exceeded. Details of the in situ interface transformation, the electronic improvement and chemical passivation are presented. The surface functionalization procedure is widely applicable and can be precisely controlled, allowing further developments of high-efficiency robust hydrogen generators. PMID:26369620

  20. Efficient direct solar-to-hydrogen conversion by in situ interface transformation of a tandem structure

    PubMed Central

    May, Matthias M.; Lewerenz, Hans-Joachim; Lackner, David; Dimroth, Frank; Hannappel, Thomas

    2015-01-01

    Photosynthesis is nature's route to convert intermittent solar irradiation into storable energy, while its use for an industrial energy supply is impaired by low efficiency. Artificial photosynthesis provides a promising alternative for efficient robust carbon-neutral renewable energy generation. The approach of direct hydrogen generation by photoelectrochemical water splitting utilizes customized tandem absorber structures to mimic the Z-scheme of natural photosynthesis. Here a combined chemical surface transformation of a tandem structure and catalyst deposition at ambient temperature yields photocurrents approaching the theoretical limit of the absorber and results in a solar-to-hydrogen efficiency of 14%. The potentiostatically assisted photoelectrode efficiency is 17%. Present benchmarks for integrated systems are clearly exceeded. Details of the in situ interface transformation, the electronic improvement and chemical passivation are presented. The surface functionalization procedure is widely applicable and can be precisely controlled, allowing further developments of high-efficiency robust hydrogen generators. PMID:26369620

  1. Advanced fabrication techniques for hydrogen-cooled engine structures. Final report, October 1975-June 1982

    SciTech Connect

    Buchmann, O.A.; Arefian, V.V.; Warren, H.A.; Vuigner, A.A.; Pohlman, M.J.

    1985-11-01

    Described is a program for development of coolant passage geometries, material systems, and joining processes that will produce long-life hydrogen-cooled structures for scramjet applications. Tests were performed to establish basic material properties, and samples constructed and evaluated to substantiate fabrication processes and inspection techniques. Results of the study show that the basic goal of increasing the life of hydrogen-cooled structures two orders of magnitude relative to that of the Hypersonic Research Engine can be reached with available means. Estimated life is 19000 cycles for the channels and 16000 cycles for pin-fin coolant passage configurations using Nickel 201. Additional research is required to establish the fatigue characteristics of dissimilar-metal coolant passages (Nickel 201/Inconel 718) and to investigate the embrittling effects of the hydrogen coolant.

  2. Electronic Structure Studies of Amorphous Hydrogenated Boron Carbide

    NASA Astrophysics Data System (ADS)

    Sky Driver, M.; Sandstrom, Joseph; Boyko, Teak; Moewes, Alexander; Caruso, Anthony

    2010-03-01

    Boron carbide is a technologically relevant material with importance in voltaic transduction. However, the local physical, chemical and electronic structure of low temperature deposited thin films of amorphous boron carbide is far from understood, hindering its progress in application. X-ray absorption and emission spectroscopies (XAS/XES) were applied to thin films of B4C and B5C:Hx to study the near Fermi edge structure; the films were prepared by RF magnetron sputtering and plasma enhanced chemical vapor deposition (PECVD) and were thermally treated after deposition from 400 to 800 C. XES spectra indicate a physical structure transition from amorphous to nanocrystalline at 700 C, a much lower temperature than expected from traditional physical vapor deposition or flash annealing temperatures reported. These structural differences are of significant interest to transport measurements and will be discussed as a correlation. Further, x-ray and ultraviolet photoemission were also collected as a compliment to XES/XAS and will be discussed in the context of understanding the local intra vs. intermolecular electronic structure of these boron-rich molecular based solids.

  3. Adsorbate-driven morphological changes on Cu(111) nano-pits

    DOE PAGESBeta

    Mudiyanselage, K.; Xu, F.; Hoffmann, F. M.; Hrbek, J.; Waluyo, I.; Boscoboinik, J. A.; Stacchiola, D. J.

    2014-12-09

    Adsorbate-driven morphological changes of pitted-Cu(111) surfaces have been investigated following the adsorption and desorption of CO and H. The morphology of the pitted-Cu(111) surfaces, prepared by Ar+ sputtering, exposed a few atomic layers deep nested hexagonal pits of diameters from 8 to 38 nm with steep step bundles. The roughness of pitted-Cu(111) surfaces can be healed by heating to 450-500 K in vacuum. Adsorption of CO on the pitted-Cu(111) surface leads to two infrared peaks at 2089-2090 and 2101-2105 cm-1 for CO adsorbed on under-coordinated sites in addition to the peak at 2071 cm-1 for CO adsorbed on atop sitesmore » of the close-packed Cu(111) surface. CO adsorbed on under-coordinated sites is thermally more stable than that of atop Cu(111) sites. Annealing of the CO-covered surface from 100 to 300 K leads to minor changes of the surface morphology. In contrast, annealing of a H covered surface to 300 K creates a smooth Cu(111) surface as deduced from infrared data of adsorbed CO and scanning tunnelling microscopy (STM) imaging. The observation of significant adsorbate-driven morphological changes with H is attributed to its stronger modification of the Cu(111) surface by the formation of a sub-surface hydride with a hexagonal structure, which relaxes into the healed Cu(111) surface upon hydrogen desorption. These morphological changes occur ~150 K below the temperature required for healing of the pitted-Cu(111) surface by annealing in vacuum. In contrast, the adsorption of CO, which only interacts with the top-most Cu layer and desorbs by 160 K, does not significantly change the morphology of the pitted-Cu(111) surface.« less

  4. Adsorbate-driven morphological changes on Cu(111) nano-pits

    SciTech Connect

    Mudiyanselage, K.; Xu, F.; Hoffmann, F. M.; Hrbek, J.; Waluyo, I.; Boscoboinik, J. A.; Stacchiola, D. J.

    2014-12-09

    Adsorbate-driven morphological changes of pitted-Cu(111) surfaces have been investigated following the adsorption and desorption of CO and H. The morphology of the pitted-Cu(111) surfaces, prepared by Ar+ sputtering, exposed a few atomic layers deep nested hexagonal pits of diameters from 8 to 38 nm with steep step bundles. The roughness of pitted-Cu(111) surfaces can be healed by heating to 450-500 K in vacuum. Adsorption of CO on the pitted-Cu(111) surface leads to two infrared peaks at 2089-2090 and 2101-2105 cm-1 for CO adsorbed on under-coordinated sites in addition to the peak at 2071 cm-1 for CO adsorbed on atop sites of the close-packed Cu(111) surface. CO adsorbed on under-coordinated sites is thermally more stable than that of atop Cu(111) sites. Annealing of the CO-covered surface from 100 to 300 K leads to minor changes of the surface morphology. In contrast, annealing of a H covered surface to 300 K creates a smooth Cu(111) surface as deduced from infrared data of adsorbed CO and scanning tunnelling microscopy (STM) imaging. The observation of significant adsorbate-driven morphological changes with H is attributed to its stronger modification of the Cu(111) surface by the formation of a sub-surface hydride with a hexagonal structure, which relaxes into the healed Cu(111) surface upon hydrogen desorption. These morphological changes occur ~150 K below the temperature required for healing of the pitted-Cu(111) surface by annealing in vacuum. In contrast, the adsorption of CO, which only interacts with the top-most Cu layer and desorbs by 160 K, does not significantly change the morphology of the pitted-Cu(111) surface.

  5. Quasiparticle band structure of infinite hydrogen fluoride and hydrogen chloride chains

    NASA Astrophysics Data System (ADS)

    Buth, Christian

    2006-10-01

    We study the quasiparticle band structure of isolated, infinite (HF)∞ and (HCl)∞ bent (zigzag) chains and examine the effect of the crystal field on the energy levels of the constituent monomers. The chains are one of the simplest but realistic models of the corresponding three-dimensional crystalline solids. To describe the isolated monomers and the chains, we set out from the Hartree-Fock approximation, harnessing the advanced Green's function methods local molecular orbital algebraic diagrammatic construction (ADC) scheme and local crystal orbital ADC (CO-ADC) in a strict second order approximation, ADC(2,2) and CO-ADC(2,2), respectively, to account for electron correlations. The configuration space of the periodic correlation calculations is found to converge rapidly only requiring nearest-neighbor contributions to be regarded. Although electron correlations cause a pronounced shift of the quasiparticle band structure of the chains with respect to the Hartree-Fock result, the bandwidth essentially remains unaltered in contrast to, e.g., covalently bound compounds.

  6. Isomers and Conformers of H(NH₂BH₂)(n)H Oligomers: Understanding the Geometries and Electronic Structure of Boron-Nitrogen-Hydrogen Compounds as Potential Hydrogen Storage Materials

    SciTech Connect

    Li, Jun; Kathmann, Shawn M.; Schenter, Gregory K.; Gutowski, Maciej S.

    2007-02-07

    Boron-nitrogen-hydrogen (BNHx) materials are polar analogs of hydrocarbons with potential applications as media for hydrogen storage. As H(NH₂BH₂)nH oligomers result from dehydrogenation of NH₃BH₃ and NH₄BH₄ materials, understanding the geometries, stabilities, and electronic structure of these oligomers is essential for developing chemical methods of hydrogen release and regeneration of the BNHx-based hydrogen storage materials. In this work we have performed computational modeling on the H(NH₂BH₂)nH (n = 1 – 6) oligomers using density functional theory (DFT). We have investigated linear chain structures and the stabilizing effects of coiling, biradicalization, and branching through Car-Parrinello molecular dynamics simulations and geometry optimizations. We find that the zig-zag linear oligomers are unstable with respect to the coiled, square-wave chain, and branched structures, with the coiled structures being the most stable. Dihydrogen bonding in oligomers, where protic Hδ⁺(N) hydrogens interact with hydridic Hδ⁻(B) hydrogens, plays a crucial role in stabilizing different isomers and conformers. The results are consistent with structures of products that are seen in experimental NMR studies of dehydrogenated ammonia borane.

  7. Unoccupied electronic states in adsorbate systems

    NASA Astrophysics Data System (ADS)

    Bertel, E.

    1991-11-01

    Experimental work on unoccupied electronic states in adsorbate systems on metallic substrates is reviewed with emphasis on recent developments. The first part is devoted to molecular adsorbates. Weakly chemisorbed hydrocarbons are briefly discussed. An exhaustive inverse photoemission (IPE) study of the CO bond to the transition metals Ni, Pb, and Pt is presented. Adsorbed NO is taken as an example to demonstrate the persisting discrepancies in the interpretation of IPE spectra. Atomic adsorbates are discussed in the second part. The quantum well state model is applied to interpret the surface states in reconstructing and non-reconstructing adsorption systems of alkali metals and hydrogen. A recent controversy on the unoccupied electronic states of the Cu(110)/O p(2×1) surface is critically reviewed. The quantum well state model is then compared to tight binding and local-density-functional calculations of the unoccupied bands and the deficiencies of the various approaches are pointed out. Finally, the relation between the surface state model and more chemically oriented models of surface bonding is briefly discussed.

  8. Magnetocaloric properties of distilled gadolinium: Effects of structural inhomogeneity and hydrogen impurity

    SciTech Connect

    Burkhanov, G. S.; Kolchugina, N. B.; Chzhan, V. B.; Chistyakov, O. D.; Tereshina, E. A.; Tereshina, I. S.; Politova, G. A.; Badurski, D.; Drulis, H.; Paukov, M.; Havela, L.

    2014-06-16

    High-purity Gd prepared by distillation is a structurally inhomogeneous system consisting of needle-shaped crystals of cross section 0.5–2.5 μm with near-c-axis orientation embedded in a matrix of nanosized (30–100 nm) grains. By measuring the magnetocaloric effect (MCE) directly, we find that the MCE values differ markedly for the plate-shaped samples cut out of a distillate along and perpendicular to the crystals. The effect of small controlled amounts of impurity (hydrogen) on the properties of distilled Gd is further studied. We observe opposite trends in the MCE response to hydrogen charging with respect to the crystal's orientation within the samples and discuss mechanisms interrelating the unique structural morphology with the impurity behavior. As an overall assessment, the Curie temperatures of α-GdH{sub x} solid solutions increase from 291 K up to 294 K when increasing hydrogen concentration x from 0 to 0.15. Hydrogenation is found to broaden the ferromagnetic-to-paramagnetic phase transition. Hydrogen-containing specimens demonstrate reversibility of MCE at these temperatures.

  9. Compensation of logarithmic corrections in calculating the fine structure of levels in hydrogen-like atoms

    SciTech Connect

    Boikova, N. A. Tyukhtyaev, Yu. N.; Faustov, R. N.

    2011-01-15

    Special features of the quasipotential approach to calculating logarithmic (in the fine-structure constant) contributions to the fine splitting of energy levels in hydrogen-like atoms are analyzed. The boundaries of the region of applicability of the Fell technique are indicated, and the order of corrections beyond this region is estimated.

  10. Electroreflectance and photoluminescence measurement of passivation by hydrogenation in GaAs/AlGaAs structures

    NASA Astrophysics Data System (ADS)

    Yang, D.; Garland, J. W.; Raccah, P. M.; Coluzza, C.; Frankl, P.; Capizzi, M.; Chambers, F.; Devane, G.

    1991-04-01

    We have studied by electrolyte electroreflectance and photoluminescence a GaAs/AlGaAs resonant tunneling structure (RTS) with a highly n-doped GaAs cap, before and after hydrogenation. We measured the amount of passivation of shallow donor states and of deep traps in the cap and found the approximate pinning levels and interace charges of the RTS.

  11. Hydrogen Bonding Between FNO and H2O: Structure and Energetics

    NASA Astrophysics Data System (ADS)

    Ting, Melodie; Peters, Nancy J. S.

    2009-09-01

    Nitrosyl fluoride, of some interest in atmospheric chemistry, has three atoms which could potentially serve as proton acceptors in the formation of hydrogen bonds. The optimized structure of FNO and H2O was determined at the MP4/6-31G** level of calculation. In the resulting structure, the hydrogen bonds at the fluorine with an energy of 5.15 kcal/mol, contrary to the prediction that less electronegative atoms make better proton acceptors/electron donors but consistent with results of proton affinity studies and with the contribution of a resonance structure with no bond between the N and F and a negative charge on the fluorine atom. The resulting structure also shows a significant increase in the length of the NF bond from 1.51 to 1.61 Å.

  12. Spin currents and filtering behavior in zigzag graphene nanoribbons with adsorbed molybdenum chains

    NASA Astrophysics Data System (ADS)

    García-Fuente, A.; Gallego, L. J.; Vega, A.

    2015-04-01

    By means of density-functional-theoretic calculations, we investigated the structural, electronic and transport properties of hydrogen-passivated zigzag graphene nanoribbons (ZGNRs) on which a one-atom-thick Mo chain was adsorbed (with or without one or two missing atoms), or in which the passivating hydrogen atoms were replaced by Mo atoms. Mo-passivated ZGNRs proved to be nonmagnetic. ZGNRs with an adsorbed defect-free Mo chain were most stable with the Mo atoms forming dimers above edge bay sites, which suppressed the magnetic moments of the C atoms in that half of the ribbon; around the Fermi level of these systems, each spin component had a transmission channel via the Mo spz band and one had an additional channel created by polarization of the ZGNR π* band, leading to a net spin current. The absence of an Mo dimer from an Mo chain adsorbed at the ZGNR edge made the system a perfect spin filter at low voltage bias by suppressing the Mo spz band channels. Thus this last kind of hybrid system is a potential spin valve.

  13. Simulation of polyethylene oxide : improved structure using better models for hydrogen and flexible walls.

    SciTech Connect

    Halley, J. W.; Duan, Y.; Nielsen, B.; Redfern, P. C.; Curtiss, L. A.; Univ. of Minnesota

    2001-08-22

    We describe calculations of the structure of amorphous polyethylene oxide using a previously reported model, but with better treatment of hydrogen positions and in a code which allows relaxation of stresses in the polymerized sample by Rahman-Parrinello techniques. We also report the effects of two different intermolecular force field potentials and find that our earlier, empirical force field produces better agreement with experimental neutron scattering results than a force field derived from ab initio electronic structure calculations.

  14. The structure-function relationship for alumina supported platinum during the formation of ammonia from nitrogen oxide and hydrogen in the presence of oxygen.

    PubMed

    Adams, Emma Catherine; Merte, Lindsay Richard; Hellman, Anders; Skoglundh, Magnus; Gustafson, Johan; Bendixen, Eva Charlotte; Gabrielsson, Pär; Bertram, Florian; Evertsson, Jonas; Zhang, Chu; Carlson, Stefan; Carlsson, Per-Anders

    2016-04-20

    We study the structure-function relationship of alumina supported platinum during the formation of ammonia from nitrogen oxide and dihydrogen by employing in situ X-ray absorption and Fourier transform infrared spectroscopy. Particular focus has been directed towards the effect of oxygen on the reaction as a model system for emerging technologies for passive selective catalytic reduction of nitrogen oxides. The suppressed formation of ammonia observed as the feed becomes net-oxidizing is accompanied by a considerable increase in the oxidation state of platinum as well as the formation of surface nitrates and the loss of NH-containing surface species. In the presence of (excess) oxygen, the ammonia formation is proposed to be limited by weak interaction between nitrogen oxide and the oxidized platinum surface. This leads to a slow dissociation rate of nitrogen oxide and thus low abundance of the atomic nitrogen surface species that can react with the adsorbed hydrogen species. In this case the consumption of hydrogen through the competing water formation reaction and decomposition/oxidation of ammonia are of less importance for the net ammonia formation. PMID:27039829

  15. Gas storage using fullerene based adsorbents

    NASA Technical Reports Server (NTRS)

    Loutfy, Raouf O. (Inventor); Lu, Xiao-Chun (Inventor); Li, Weijiong (Inventor); Mikhael, Michael G. (Inventor)

    2000-01-01

    This invention is directed to the synthesis of high bulk density high gas absorption capacity adsorbents for gas storage applications. Specifically, this invention is concerned with novel gas absorbents with high gravimetric and volumetric gas adsorption capacities which are made from fullerene-based materials. By pressing fullerene powder into pellet form using a conventional press, then polymerizing it by subjecting the fullerene to high temperature and high inert gas pressure, the resulting fullerene-based materials have high bulk densities and high gas adsorption capacities. By pre-chemical modification or post-polymerization activation processes, the gas adsorption capacities of the fullerene-based adsorbents can be further enhanced. These materials are suitable for low pressure gas storage applications, such as oxygen storage for home oxygen therapy uses or on-board vehicle natural gas storage. They are also suitable for storing gases and vapors such as hydrogen, nitrogen, carbon dioxide, and water vapor.

  16. Aniline adsorption, hydrogenation, and hydrogenolysis on the Ni(100) surface

    SciTech Connect

    Huang, S.X.; Gland, J.L.; Fischer, D.A.

    1996-06-13

    The bonding and reactions of adsorbed aniline have been characterized on the Ni(100) surface both in hydrogen and in vacuum with a combination of surface spectroscopies. The structure of adsorbed aniline and derived intermediates has been characterized by near-edge X-ray absorption fine structure (NEXAFS) and X-ray photoemission spectroscopy (XPS). The dominant surface reactions have been studied using temperature-programmed reaction spectroscopy (TPRS) and in-situ temperature-programmed fluorescence yield near- edge spectroscopy (TP FYNES). Competition between hydrogenation, hydrogenolysis, and dehydrogenation of aniline in the 300-400 K temperature range depends markedly on hydrogen pressures in the vacuum to 0.01 Torr range. In the absence of external hydrogen, dehydrogenation dominates with increasing temperature. Both hydrogenation and hydrogenolysis of aniline-derived surface intermediates are enhanced dramatically by hydrogen atmospheres. For aniline coverages up to 1 monolayer, hydrogenolysis to form benzene at 475 K is dominant over a broad hydrogen pressure range (> 10{sup -6} Torr). Ultrasoft X-ray absorption spectra above the carbon K edge of the aniline-derived surface intermediates reveal that the precursor for hydrogenolysis is a hydrogenated aniline-derived species indistinguishable from cyclohexylamine. 34 refs., 12 figs., 2 tabs.

  17. Structural transformation and tuning behavior induced by the propylamine concentration in hydrogen clathrate hydrates.

    PubMed

    Park, Seongmin; Kang, Hyery; Shin, Kyuchul; Seo, Yutaek; Lee, Huen

    2015-01-21

    The structures and the guest-host distributions of iso-propylamine (i-PA) and n-propylamine (n-PA) hydrates with hydrogen as a secondary guest were identified by powder X-ray diffraction and Raman spectroscopic analysis. The structure of 11.1 mol% i-PA + H2 hydrate was identified to be hexagonal (space group P63/mmc) with a few unindexed diffraction peaks, while 5.6 mol% i-PA + H2 hydrate had a cubic structure (space group Fd3¯m). Similarly, the structure of 13.3 mol% n-PA + H2 hydrate was found to be monoclinic (space group P2(1)/n), while 5.6 mol% n-PA + H2 hydrate had a cubic structure (space group Fd3¯m). The 'tuning' phenomenon, multiple occupancy of hydrogen in the large cage at the pressure and temperature regions outside of pure hydrogen hydrate stability, was observed in the i-PA + H2 hydrate only when the amine concentration was lower than the stoichiometric value of structure II hydrate. The three-phase (H-L(w)-V) equilibria for alkylamine + H2 + water mixtures were also measured to investigate their thermodynamic stability. PMID:25475482

  18. Hydrogen adsorption and desorption with 3D silicon nanotube-network and film-network structures: Monte Carlo simulations

    SciTech Connect

    Li, Ming; Kang, Zhan; Huang, Xiaobo

    2015-08-28

    Hydrogen is clean, sustainable, and renewable, thus is viewed as promising energy carrier. However, its industrial utilization is greatly hampered by the lack of effective hydrogen storage and release method. Carbon nanotubes (CNTs) were viewed as one of the potential hydrogen containers, but it has been proved that pure CNTs cannot attain the desired target capacity of hydrogen storage. In this paper, we present a numerical study on the material-driven and structure-driven hydrogen adsorption of 3D silicon networks and propose a deformation-driven hydrogen desorption approach based on molecular simulations. Two types of 3D nanostructures, silicon nanotube-network (Si-NN) and silicon film-network (Si-FN), are first investigated in terms of hydrogen adsorption and desorption capacity with grand canonical Monte Carlo simulations. It is revealed that the hydrogen storage capacity is determined by the lithium doping ratio and geometrical parameters, and the maximum hydrogen uptake can be achieved by a 3D nanostructure with optimal configuration and doping ratio obtained through design optimization technique. For hydrogen desorption, a mechanical-deformation-driven-hydrogen-release approach is proposed. Compared with temperature/pressure change-induced hydrogen desorption method, the proposed approach is so effective that nearly complete hydrogen desorption can be achieved by Si-FN nanostructures under sufficient compression but without structural failure observed. The approach is also reversible since the mechanical deformation in Si-FN nanostructures can be elastically recovered, which suggests a good reusability. This study may shed light on the mechanism of hydrogen adsorption and desorption and thus provide useful guidance toward engineering design of microstructural hydrogen (or other gas) adsorption materials.

  19. Hydrogen adsorption and desorption with 3D silicon nanotube-network and film-network structures: Monte Carlo simulations

    NASA Astrophysics Data System (ADS)

    Li, Ming; Huang, Xiaobo; Kang, Zhan

    2015-08-01

    Hydrogen is clean, sustainable, and renewable, thus is viewed as promising energy carrier. However, its industrial utilization is greatly hampered by the lack of effective hydrogen storage and release method. Carbon nanotubes (CNTs) were viewed as one of the potential hydrogen containers, but it has been proved that pure CNTs cannot attain the desired target capacity of hydrogen storage. In this paper, we present a numerical study on the material-driven and structure-driven hydrogen adsorption of 3D silicon networks and propose a deformation-driven hydrogen desorption approach based on molecular simulations. Two types of 3D nanostructures, silicon nanotube-network (Si-NN) and silicon film-network (Si-FN), are first investigated in terms of hydrogen adsorption and desorption capacity with grand canonical Monte Carlo simulations. It is revealed that the hydrogen storage capacity is determined by the lithium doping ratio and geometrical parameters, and the maximum hydrogen uptake can be achieved by a 3D nanostructure with optimal configuration and doping ratio obtained through design optimization technique. For hydrogen desorption, a mechanical-deformation-driven-hydrogen-release approach is proposed. Compared with temperature/pressure change-induced hydrogen desorption method, the proposed approach is so effective that nearly complete hydrogen desorption can be achieved by Si-FN nanostructures under sufficient compression but without structural failure observed. The approach is also reversible since the mechanical deformation in Si-FN nanostructures can be elastically recovered, which suggests a good reusability. This study may shed light on the mechanism of hydrogen adsorption and desorption and thus provide useful guidance toward engineering design of microstructural hydrogen (or other gas) adsorption materials.

  20. Structures and the Hydrogen Bonding Abilities of Estrogens Studied by Supersonic Jet/laser Spectroscopy

    NASA Astrophysics Data System (ADS)

    Morishima, Fumiya; Inokuchi, Yoshiya; Ebata, Takayuki

    2013-06-01

    Estrone, estradiol, estriol are known as endogenous estrogen which have the same steroidal frame with different substituent, leading to difference of physiological activity upon the formation of hydrogen bond with estrogen receptor. In the present study, structures of estrogens and their hydrated clusters in a supersonic jet have been studied by various laser spectroscopic techniques and density functional theory calculation to study how the difference of substituents affects their hydrogen bonding ability. Infrared spectra in the OH stretching region indicate a formation of intramolecular hydrogen-bond in estriol, which may lead to weaker physiological activity among the three estrogens. We also measured electronic and infrared spectra of 1:1 hydrated clusters of estrogen. The results show a switch of stable hydration site from the phenolic OH group to the five member ring by substituting one more OH group.

  1. Hydrogen-induced modification of the medium-range structural order in amorphous silicon films

    SciTech Connect

    Nittala, L.N.; Jayaraman, S.; Sperling, B.A.; Abelson, J.R.

    2005-12-12

    We use fluctuation electron microscopy to determine changes in the medium-range structural order of un-hydrogenated amorphous silicon thin films after they are exposed to atomic hydrogen at a substrate temperature of 230 deg. C. The films are deposited by magnetron sputtering at either 230 or 350 deg. C substrate temperature to obtain starting states with small or large initial medium-range order, respectively. The in-diffusion of atomic hydrogen causes the medium-range order to decrease for the small initial order but to increase for the large initial order. We suggest that this behavior can be understood in terms of classical nucleation theory: The ordered regions of small diameter are energetically unstable and can lower their energy by evolving towards a continuous random network, whereas the ordered regions of large diameter are energetically stable and can lower their energy by coarsening towards the nanocrystalline state.

  2. Structure-Reactivity Relationship in the Frustrated Lewis Pair (FLP)-Catalyzed Hydrogenation of Imines.

    PubMed

    Tussing, Sebastian; Kaupmees, Karl; Paradies, Jan

    2016-05-23

    The autoinduced, frustrated Lewis pair (FLP)-catalyzed hydrogenation of 16-benzene-ring substituted N-benzylidene-tert-butylamines with B(2,6-F2 C6 H3 )3 and molecular hydrogen was investigated by kinetic analysis. The pKa values for imines and for the corresponding amines were determined by quantum-mechanical methods and provided a direct proportional relationship. The correlation of the two rate constants k1 (simple catalytic cycle) and k2 (autoinduced catalytic cycle) with pKa difference between imine and amine pairs (ΔpKa ) or Hammett's σ parameter served as useful parameters to establish a structure-reactivity relationship for the FLP-catalyzed hydrogenation of imines. PMID:27060884

  3. A revised structure and hydrogen bonding system in cellulose II from a neutron fiber diffraction analysis

    SciTech Connect

    Langan, P.; Nishiyama, Y.; Chanzy, H.

    1999-11-03

    The crystal and molecular structure and hydrogen bonding system in cellulose II have been revised using new neutron diffraction data extending to 1.2 {angstrom} resolution collected from two highly crystalline fiber samples of mercerized flax. Mercerization was achieved in NaOH/H{sub 2}O for one sample and in NaOD/D{sub 2}O for the other, corresponding to the labile hydroxymethyl moieties being hydrogenated and deuterated, respectively. Fourier difference maps were calculated in which neutron difference amplitudes were combined with phases calculated from two revised X-ray models of cellulose II. The revised phasing models were determined by refinement against the X-ray data set of Kolpak and Blackwell, using the LALS methodology. Both models have two antiparallel chains organized in a P2{sub 1} space group and unit cell parameters: a = 8.01 {angstrom}, b = 9.04 {angstrom}, c = 10.36 {angstrom}, and {gamma} = 117.1{degree}. One has equivalent backbone conformations for both chains but different conformations for the hydroxymethyl moieties: gt for the origin chain and tg for the center chain. The second model based on the recent crystal structures of cellotetraose, has different conformations for the two chains but nearly equivalent conformations for the hydroxymethyl moieties. On the basis of the X-ray data alone, the models could not be differentiated. From the neutron Fourier difference maps, possible labile hydrogen atom positions were identified for each model and refined using LALS. The second model is significantly different from previous proposals based on the crystal structures of cellotetraose, MD simulations of cellulose II, and any potential hydrogen-bonding network in the structure of cellulose II determined in earlier X-ray fiber diffraction studies. The exact localization of the labile hydrogen atoms involved in this bonding, together with their donor and acceptor characteristics, is presented and discussed. This study provides, for the first time

  4. Hydrogen bonding and solution state structure of salicylaldehyde-4-phenylthiosemicarbazone: A combined experimental and theoretical study

    NASA Astrophysics Data System (ADS)

    Novak, Predrag; Pičuljan, Katarina; Hrenar, Tomica; Biljan, Tomislav; Meić, Zlatko

    2009-02-01

    Hydrogen bonding in salicylaldehyde-4-phenylthiosemicarbazone ( 1) has been studied by using experimental (NMR, Raman and UV spectroscopies) and quantum chemical (DFT) methods. It has been demonstrated that 1 adopted the hydroxy-thione tautomeric form in solution as found also in the solid state and previously indicated by secondary deuterium isotope effects. Apart from the intra-molecular hydrogen bonds new interactions between 1 and solvent molecules were formed as well. Changes in NMR chemical shifts and calculations have pointed towards a formation of inter-molecular three-centered hydrogen bonds in each of the studied complexes involving OH and NH groups of 1 and associated solvent molecules. Stabilization energies of intra-molecular hydrogen bonds were found to decrease with the increase of the solvent polarity. Two-dimensional NOESY spectra indicated conformational changes in solution with respect to the structure observed in the solid state. These were accounted for by a relatively low barrier of the rotation of the N sbnd N single bond thus enabling a molecule to posses a higher conformational flexibility in solution with portions of skewed conformations. The results presented here can help in a better understanding of the role hydrogen bonds can play in bioactivity of related thiosemicarbazone derivatives and their metal complexes.

  5. Probing the structure, stability and hydrogen storage properties of calcium dodecahydro- closo-dodecaborate

    NASA Astrophysics Data System (ADS)

    Stavila, Vitalie; Her, Jae-Hyuk; Zhou, Wei; Hwang, Son-Jong; Kim, Chul; Ottley, Leigh Anna M.; Udovic, Terrence J.

    2010-05-01

    Calcium borohydride can reversibly store up to 9.6 wt% hydrogen; however, the material displays poor cyclability, generally associated with the formation of stable intermediate species. In an effort to understand the role of such intermediates on the hydrogen storage properties of Ca(BH 4) 2, calcium dodecahydro- closo-dodecaborate was isolated and characterized by diffraction and spectroscopic techniques. The crystal structure of CaB 12H 12 was determined from powder XRD data and confirmed by DFT and neutron vibrational spectroscopy studies. Attempts to dehydrogenate/hydrogenate mixtures of CaB 12H 12 and CaH 2 were made under conditions known to favor partial reversibility in calcium borohydride. However, up to 670 K no notable formation of Ca(BH 4) 2 (during hydrogenation) or CaB 6 (during dehydrogenation) occurred. It was demonstrated that the stability of CaB 12H 12 can be significantly altered using CaH 2 as a destabilizing agent to favor the hydrogen release.

  6. DFT STUDY OF HYDROGEN STORAGE ON Li- AND Na-DOPED C59B HETEROFULLERENE

    NASA Astrophysics Data System (ADS)

    Zahedi, Ehsan; Mozaffari, Majid

    2014-05-01

    Effect of light alkali metal (Li and Na) decorated on the C59B heterofullerene for hydrogen storage is considered using DFT-MPW1PW91 method. Results show that Li and Na atoms strongly prefer to adsorb on top of five-member and six-member ring where a carbon atom is replaced by a boron atom. Significant charge transfer from the alkali metal to the C59B compensates for the electron deficiency of C59B and makes the latter aromatic in nature. Corrected binding energies of hydrogen molecule on the alkali-doped C59B using counterpoise method, structural properties and NBO analysis indicate that first hydrogen molecule is adsorbed physically and does not support minimal conditions of DOE requirement. Finally, positive values of binding energies for the adsorption of a second hydrogen molecule show that alkali doped C59B are capable of storing a maximum of one hydrogen molecule.

  7. Scanning tunneling microscopy characterization of the geometric and electronic structure of hydrogen-terminated silicon surfaces

    NASA Technical Reports Server (NTRS)

    Kaiser, W. J.; Bell, L. D.; Hecht, M. H.; Grunthaner, F. J.

    1988-01-01

    Scanning tunneling microscopy (STM) methods are used to characterize hydrogen-terminated Si surfaces prepared by a novel method. The surface preparation method is used to expose the Si-SiO2 interface. STM images directly reveal the topographic structure of the Si-SiO2 interface. The dependence of interface topography on oxide preparation conditions observed by STM is compared to the results of conventional surface characterization methods. Also, the electronic structure of the hydrogen-terminated surface is studied by STM spectroscopy. The near-ideal electronic structure of this surface enables direct tunnel spectroscopy measurements of Schottky barrier phenomena. In addition, this method enables probing of semiconductor subsurface properties by STM.

  8. Hydrogen bonded structure of water and aqueous solutions of sodium halides: a Raman spectroscopic study

    NASA Astrophysics Data System (ADS)

    Li, Ruihua; Jiang, Zhanpeng; Chen, Fengen; Yang, Hongwei; Guan, Yuntao

    2004-11-01

    The OH stretching (2500-4000 cm -1) Raman spectra from pure water and sodium halides solutions are obtained. The Raman contours are deconvoluted with five Gaussian components that their center frequencies are 3051, 3233, 3393, 3511 and 3628 cm -1, respectively. From the Raman spectra and their deconvolutions similarities and differences of the effects of temperature and sodium halides on hydrogen bond structure of water are shown clearly. Like temperature, all of sodium halides break tetrahedral structure of water, and the Gaussian component of 3233 cm -1 decreases and the components of 3393 and 3511 cm -1 increase basically. The differences lie in their effects on the component 3051 and 3628 cm -1. All of halogenic ions break tetrahedral structure of water and their breaking actions are in the order of F -1hydrogen bonds.

  9. Electronic structure characterization and bandgap engineeringofsolar hydrogen materials

    SciTech Connect

    Guo, Jinghua

    2007-11-01

    Bandgap, band edge positions as well as the overall band structure of semiconductors are of crucial importance in photoelectrochemical and photocatalytic applications. The energy position of the band edge level can be controlled by the electronegativity of the dopants, the pH of the solution (flatband potential variation of 60 mV per pH unit), as well as by quantum confinement effects. Accordingly, band edges and bandgap can be tailored to achieve specific electronic, optical or photocatalytic properties. Synchrotron radiation with photon energy at or below 1 keV is giving new insight into such areas as condensed matter physics and extreme ultraviolet optics technology. In the soft x-ray region, the question tends to be, what are the electrons doing as they migrated between the atoms. In this paper, I will present a number of soft x-ray spectroscopic study of nanostructured 3d metal compounds Fe{sub 2}O{sub 3} and ZnO.

  10. Recognizing molecular patterns by machine learning: an agnostic structural definition of the hydrogen bond.

    PubMed

    Gasparotto, Piero; Ceriotti, Michele

    2014-11-01

    The concept of chemical bonding can ultimately be seen as a rationalization of the recurring structural patterns observed in molecules and solids. Chemical intuition is nothing but the ability to recognize and predict such patterns, and how they transform into one another. Here, we discuss how to use a computer to identify atomic patterns automatically, so as to provide an algorithmic definition of a bond based solely on structural information. We concentrate in particular on hydrogen bonding--a central concept to our understanding of the physical chemistry of water, biological systems, and many technologically important materials. Since the hydrogen bond is a somewhat fuzzy entity that covers a broad range of energies and distances, many different criteria have been proposed and used over the years, based either on sophisticate electronic structure calculations followed by an energy decomposition analysis, or on somewhat arbitrary choices of a range of structural parameters that is deemed to correspond to a hydrogen-bonded configuration. We introduce here a definition that is univocal, unbiased, and adaptive, based on our machine-learning analysis of an atomistic simulation. The strategy we propose could be easily adapted to similar scenarios, where one has to recognize or classify structural patterns in a material or chemical compound. PMID:25381505

  11. Recognizing molecular patterns by machine learning: An agnostic structural definition of the hydrogen bond

    NASA Astrophysics Data System (ADS)

    Gasparotto, Piero; Ceriotti, Michele

    2014-11-01

    The concept of chemical bonding can ultimately be seen as a rationalization of the recurring structural patterns observed in molecules and solids. Chemical intuition is nothing but the ability to recognize and predict such patterns, and how they transform into one another. Here, we discuss how to use a computer to identify atomic patterns automatically, so as to provide an algorithmic definition of a bond based solely on structural information. We concentrate in particular on hydrogen bonding - a central concept to our understanding of the physical chemistry of water, biological systems, and many technologically important materials. Since the hydrogen bond is a somewhat fuzzy entity that covers a broad range of energies and distances, many different criteria have been proposed and used over the years, based either on sophisticate electronic structure calculations followed by an energy decomposition analysis, or on somewhat arbitrary choices of a range of structural parameters that is deemed to correspond to a hydrogen-bonded configuration. We introduce here a definition that is univocal, unbiased, and adaptive, based on our machine-learning analysis of an atomistic simulation. The strategy we propose could be easily adapted to similar scenarios, where one has to recognize or classify structural patterns in a material or chemical compound.

  12. Recognizing molecular patterns by machine learning: An agnostic structural definition of the hydrogen bond

    SciTech Connect

    Gasparotto, Piero; Ceriotti, Michele

    2014-11-07

    The concept of chemical bonding can ultimately be seen as a rationalization of the recurring structural patterns observed in molecules and solids. Chemical intuition is nothing but the ability to recognize and predict such patterns, and how they transform into one another. Here, we discuss how to use a computer to identify atomic patterns automatically, so as to provide an algorithmic definition of a bond based solely on structural information. We concentrate in particular on hydrogen bonding – a central concept to our understanding of the physical chemistry of water, biological systems, and many technologically important materials. Since the hydrogen bond is a somewhat fuzzy entity that covers a broad range of energies and distances, many different criteria have been proposed and used over the years, based either on sophisticate electronic structure calculations followed by an energy decomposition analysis, or on somewhat arbitrary choices of a range of structural parameters that is deemed to correspond to a hydrogen-bonded configuration. We introduce here a definition that is univocal, unbiased, and adaptive, based on our machine-learning analysis of an atomistic simulation. The strategy we propose could be easily adapted to similar scenarios, where one has to recognize or classify structural patterns in a material or chemical compound.

  13. Hydrogen program overview

    SciTech Connect

    Gronich, S.

    1997-12-31

    This paper consists of viewgraphs which summarize the following: Hydrogen program structure; Goals for hydrogen production research; Goals for hydrogen storage and utilization research; Technology validation; DOE technology validation activities supporting hydrogen pathways; Near-term opportunities for hydrogen; Market for hydrogen; and List of solicitation awards. It is concluded that a full transition toward a hydrogen economy can begin in the next decade.

  14. Hydrogen segregation and its roles in structural stability and metallization: silane under pressure

    PubMed Central

    Cui, Wenwen; Shi, Jingming; Liu, Hanyu; Yao, Yansun; Wang, Hui; Iitaka, Toshiaki; Ma, Yanming

    2015-01-01

    We present results from first-principles calculations on silane (SiH4) under pressure. We find that a three dimensional P-3 structure becomes the most stable phase above 241 GPa. A prominent structural feature, which separates the P-3 structure from previously observed/predicted SiH4 structures, is that a fraction of hydrogen leaves the Si-H bonding environment and forms segregated H2 units. The H2 units are sparsely populated in the system and intercalated with a polymeric Si-H framework. Calculations of enthalpy of formation suggest that the P-3 structure is against the decomposition into Si-H binaries and/or the elemental crystals. Structural stability of the P-3 structure is attributed to the electron-deficient multicenter Si-H-Si interactions when neighboring silicon atoms are linked together through a common hydrogen atom. Within the multicenter bonds, electrons are delocalized and this leads to a metallic state, possibly also a superconducting state, for SiH4. An interesting outcome of the present study is that the enthalpy sum of SiH4 (P-3 structure) and Si (fcc structure) appears to be lower than the enthalpy of disilane (Si2H6) between 200 and 300 GPa (for all previously predicted crystalline forms of Si2H6), which calls for a revisit of the stability of Si2H6 under high pressure. PMID:26266340

  15. Hydrogen segregation and its roles in structural stability and metallization: silane under pressure

    NASA Astrophysics Data System (ADS)

    Cui, Wenwen; Shi, Jingming; Liu, Hanyu; Yao, Yansun; Wang, Hui; Iitaka, Toshiaki; Ma, Yanming

    2015-08-01

    We present results from first-principles calculations on silane (SiH4) under pressure. We find that a three dimensional P-3 structure becomes the most stable phase above 241 GPa. A prominent structural feature, which separates the P-3 structure from previously observed/predicted SiH4 structures, is that a fraction of hydrogen leaves the Si-H bonding environment and forms segregated H2 units. The H2 units are sparsely populated in the system and intercalated with a polymeric Si-H framework. Calculations of enthalpy of formation suggest that the P-3 structure is against the decomposition into Si-H binaries and/or the elemental crystals. Structural stability of the P-3 structure is attributed to the electron-deficient multicenter Si-H-Si interactions when neighboring silicon atoms are linked together through a common hydrogen atom. Within the multicenter bonds, electrons are delocalized and this leads to a metallic state, possibly also a superconducting state, for SiH4. An interesting outcome of the present study is that the enthalpy sum of SiH4 (P-3 structure) and Si (fcc structure) appears to be lower than the enthalpy of disilane (Si2H6) between 200 and 300 GPa (for all previously predicted crystalline forms of Si2H6), which calls for a revisit of the stability of Si2H6 under high pressure.

  16. Hydrogen segregation and its roles in structural stability and metallization: silane under pressure.

    PubMed

    Cui, Wenwen; Shi, Jingming; Liu, Hanyu; Yao, Yansun; Wang, Hui; Iitaka, Toshiaki; Ma, Yanming

    2015-01-01

    We present results from first-principles calculations on silane (SiH4) under pressure. We find that a three dimensional P-3 structure becomes the most stable phase above 241 GPa. A prominent structural feature, which separates the P-3 structure from previously observed/predicted SiH4 structures, is that a fraction of hydrogen leaves the Si-H bonding environment and forms segregated H2 units. The H2 units are sparsely populated in the system and intercalated with a polymeric Si-H framework. Calculations of enthalpy of formation suggest that the P-3 structure is against the decomposition into Si-H binaries and/or the elemental crystals. Structural stability of the P-3 structure is attributed to the electron-deficient multicenter Si-H-Si interactions when neighboring silicon atoms are linked together through a common hydrogen atom. Within the multicenter bonds, electrons are delocalized and this leads to a metallic state, possibly also a superconducting state, for SiH4. An interesting outcome of the present study is that the enthalpy sum of SiH4 (P-3 structure) and Si (fcc structure) appears to be lower than the enthalpy of disilane (Si2H6) between 200 and 300 GPa (for all previously predicted crystalline forms of Si2H6), which calls for a revisit of the stability of Si2H6 under high pressure. PMID:26266340

  17. Structural arrangement trade study. Volume 3: Reusable Hydrogen Composite Tank System (RHCTS) and Graphite Composite Primary Structures (GCPS). Addendum

    NASA Technical Reports Server (NTRS)

    1995-01-01

    This volume is the third of a 3 volume set that addresses the structural trade study plan that will identify the most suitable structural configuration for an SSTO winged vehicle capable of delivering 25,000 lbs to a 220 nm circular orbit at 51.6 deg inclination. The most suitable Reusable Hydrogen Composite Tank System (RHCTS), and Graphite Composite Tank System (GCPS) composite materials for intertank, wing and thrust structures are identified. Vehicle resizing charts, selection criteria and back-up charts, parametric costing approach and the finite element method analysis are discussed.

  18. Structural Arrangement Trade Study. Volume 1: Reusable Hydrogen Composite Tank System (RHCTS) and Graphite Composite Primary Structures (GCPS). Executive summary

    NASA Technical Reports Server (NTRS)

    1995-01-01

    This volume is the first of a three volume set that discusses the structural arrangement trade study plan that will identify the most suitable configuration for an SSTO winged vehicle capable of delivering 25,000 lbs to a 220 nm circular orbit at 51.6 deg inclination. The Reusable Hydrogen Composite Tank System (RHCTS), and Graphite Composite Primary Structures most suitable for intertank, wing and thrust structures are identified. This executive summary presents the trade study process, the selection process, requirements used, analysis performed and data generated. Conclusions and recommendations are also presented.

  19. Frequent Side Chain Methyl Carbon-Oxygen Hydrogen Bonding in Proteins Revealed by Computational and Stereochemical Analysis of Neutron Structures

    PubMed Central

    Brooks, Charles L.; Trievel, Raymond C.

    2016-01-01

    The propensity of backbone Cα atoms to engage in carbon-oxygen (CH···O) hydrogen bonding is well-appreciated in protein structure, but side chain CH···O hydrogen bonding remains largely uncharacterized. The extent to which side chain methyl groups in proteins participate in CH···O hydrogen bonding is examined through a survey of neutron crystal structures, quantum chemistry calculations, and molecular dynamics simulations. Using these approaches, methyl groups were observed to form stabilizing CH···O hydrogen bonds within protein structure that are maintained through protein dynamics and participate in correlated motion. Collectively, these findings illustrate that side chain methyl CH···O hydrogen bonding contributes to the energetics of protein structure and folding. PMID:25401519

  20. Role of material structure on molecular diffusion of hydrogen in a-Si:C:H films

    SciTech Connect

    Ullersma, E.H.C.; Inia, D.K.; Habraken, F.H.P.M.; Van Sark, W.G.J.H.M.; Van der Weg, W.F.; Westerduin, K.T.; Van Veen, A.

    1997-07-01

    The authors used Fourier Transform Infra-Red (FTIR) analysis of bi-layers of plasma-grown hydrogenated amorphous silicon-carbide films to investigate the role of the material structure in the hydrogen diffusion process. In the bi-layers one layer was deposited using CH{sub 4}/SiH{sub 4} and in the other layer CD{sub 4}/SiD{sub 4} was applied. The carbon concentration was 20 at.%. In previous work they showed, using Elastic Recoil Detection (ERD) and Thermal Desorption Spectrometry (TDS), that the hydrogen moves molecular through these films in the temperature range 325 < T < 450 C. Using FTIR they obtained information about the number of Si-H and Si-D bonds and their change upon annealing. The FTIR data indicate a structural change during annealing. A comparison with the TDS spectra led them to the conclusion that at higher temperatures the out-diffusion of hydrogen stops because of the hindrance of the molecular transport.

  1. Rotational spectroscopy and molecular structure of the 1,1,2-trifluoroethylene-hydrogen chloride complex.

    PubMed

    Leung, Helen O; Marshall, Mark D; Ray, Margaret R; Kang, Justin T

    2010-10-21

    Fourier transform microwave spectra in the 6-20 GHz region are obtained for the complex formed between 1,1,2-trifluoroethylene and hydrogen chloride, including both (35)Cl and (37)Cl isotopomers. Analysis of the spectra provides rotational constants and additionally, the complete quadrupole hyperfine coupling tensor in both the inertial and principal electric field gradient axis systems. The inertial information contained in the rotational constants combined with the results of the hyperfine analysis provides the structure for CF(2)CHF-HCl. A primary, hydrogen bonding interaction exists between the HCl donor and the F atom geminal to the H atom on the substituted ethylene. The hydrogen bond is bent from linearity to allow a secondary interaction to form between this H atom and the Cl atom. Comparisons made to similar complexes involving both other protic acids (HF and HCCH) and fluoroethylenes (vinyl fluoride and 1,1-difluoroethylene) reveal the effects of varying gas phase hydrogen bond donor strength, of increasing fluorine substitution on fluorine atom nucleophilicity, and on the relative importance of steric versus electrostatic effects in determining the structures of these species. PMID:20873841

  2. NMR shielding constants for hydrogen guest molecules in structure II clathrates.

    PubMed

    Alavi, Saman; Ripmeester, J A; Klug, D D

    2005-08-01

    Proton NMR shielding constants and chemical shifts for hydrogen guests in small and large cages of structure II clathrates are calculated using density-functional theory and the gauge-invariant atomic-orbital method. Shielding constants are calculated at the B3LYP level with the 6-311++G(d,p) basis set. The calculated chemical shifts are corrected with a linear regression to reproduce the experimental chemical shifts of a set of standard molecules. The calculated chemical shifts of single hydrogen molecules in the small and large structure II cages are 4.94 and 4.84 ppm, respectively, which show that within the error range of the method the H2 guest molecules in the small and large cages cannot be distinguished. Chemical shifts are also calculated for double occupancy of the hydrogen guests in small cages, and double, triple, and quadruple occupancy in large cages. Multiple occupancy changes the chemical shift of the hydrogen guests by approximately 0.2 ppm. The relative effects of other guest molecules and the cage on the chemical shift are studied for the cages with multiple occupancies. PMID:16108623

  3. Intramolecular hydrogen bond stabilization of hemiaminal structures, precursors of imidazo[1,2- a]pyridine

    NASA Astrophysics Data System (ADS)

    Velázquez, Manuel; Salgado-Zamora, Héctor; Pérez, Cuauhtémoc; Campos-A, Ma Elena; Mendoza, Patricia; Jiménez, Hugo; Jiménez, Rogelio

    2010-08-01

    A theoretical study supported by calculations at the B3LYP/6-31+G and B3LYP/6-311++G(d,p) levels demonstrated that an attractive interaction involving a hydrogen bond between a hydroxyl group and an acceptor halogen atom (O-H⋯Cl) is present in 2,3-dihydro-2-hydroxy-2-chloromethylimidazo[1,2- a]pyridinium salts, which have an hemiaminal structure. However, the conformers obtained from a dihedral angle analysis performed upon these hemiaminal structures showed relatively small differences in energy among them, indicating that the hydrogen bonding interaction is not entirely responsible for preventing the aromatization process. Calculations were carried out on the gas phase of the hemiaminal cation 6b and the corresponding fully aromatic heterocycle cation 8b. It was found that the difference in energy between the two species is rather small, suggesting that other factors must be contributing to the hemiaminal isolation. The fact that a hydrogen bond is a stabilizing element of the hemiaminal suggests that the formation process of this compound should be favored in aprotic solvents. Accordingly, the condensation of several 2-aminopyridines with 3-bromo-1,1,1-trifluoroacetone was revised. The reaction performed in dry acetone (a non-competing hydrogen bond solvent) proceeded to the hemiaminal derivative, thus confirming the prediction made by theoretical calculations.

  4. Structure and hydrogen storage properties of the hexagonal Laves phase Sc(Al1-xNix)2

    NASA Astrophysics Data System (ADS)

    Sahlberg, Martin; Ångström, Jonas; Zlotea, Claudia; Beran, Premysl; Latroche, Michel; Pay Gómez, Cesar

    2012-12-01

    The crystal structures of hydrogenated and unhydrogenated Sc(Al1-xNix)2 Laves phases have been studied by combining several diffraction techniques and it is shown that hydrogen is situated interstitially in the A2B2-sites, which have the maximum number of scandium neighbours. The hydrogen absorption/desorption behaviour has also been investigated. It is shown that a solid solution of hydrogen forms in the mother compound. The hydrogen storage capacity exceeds 1.7 H/f.u. at 374 K, and the activation energy of hydrogen desorption was determined to 4.6 kJ/mol H2. It is shown that these compounds share the same local coordination as Frank-Kasper-type approximants and quasicrystals, which opens up the possibility of finding many new hydride phases with these types of crystal structures.

  5. Hydrogen electrode in lead-hydrogen storage batteries. Influence of macroscopic electrode structure on the electrode's electrochemical activity

    SciTech Connect

    Burmistrov, O.A.; Lyzlov, N.Yu.

    1988-03-01

    Optimum matrix materials and features of a hydrogen gas electrode of lead-hydrogen storage batteries were examined. Carbon materials AG-3, SKT-6A and acetylene black were used as the current-collecting base of the electrode in contact with the sulfuric acid electrolyte. High-pressure polyethylene powder or fluoropolymer were used as wetproofing agents and as electrode binders. Platinum was applied to the electrodes, tested in a gaseous hydrogen saturated cell and linear-scan voltammograms of the electrodes were recorded. Polarization comparable with that found for the lead-dioxide electrode was produced when current was drawn from the hydrogen electrodes.

  6. Structural evolution and electronic properties of n-type doped hydrogenated amorphous silicon thin films

    NASA Astrophysics Data System (ADS)

    He, Jian; Li, Wei; Xu, Rui; Qi, Kang-Cheng; Jiang, Ya-Dong

    2011-12-01

    The relationship between structure and electronic properties of n-type doped hydrogenated amorphous silicon (a-Si:H) thin films was investigated. Samples with different features were prepared by plasma enhanced chemical vapor deposition (PECVD) at various substrate temperatures. Raman spectroscopy and Fourier transform infrared (FTIR) spectroscopy were used to evaluate the structural evolution, meanwhile, electronic-spin resonance (ESR) and optical measurement were applied to explore the electronic properties of P-doped a-Si:H thin films. Results reveal that the changes in materials structure affect directly the electronic properties and the doping efficiency of dopant.

  7. Structural consequences of hydrogen intercalation of epitaxial graphene on SiC(0001)

    SciTech Connect

    Emery, Jonathan D. E-mail: bedzyk@northwestern.edu; Johns, James E.; McBriarty, Martin E.; Hersam, Mark C.; Wheeler, Virginia H.; Kurt Gaskill, D.; Detlefs, Blanka; Bedzyk, Michael J. E-mail: bedzyk@northwestern.edu

    2014-10-20

    The intercalation of various atomic species, such as hydrogen, to the interface between epitaxial graphene (EG) and its SiC substrate is known to significantly influence the electronic properties of the graphene overlayers. Here, we use high-resolution X-ray reflectivity to investigate the structural consequences of the hydrogen intercalation process used in the formation of quasi-free-standing (QFS) EG/SiC(0001). We confirm that the interfacial layer is converted to a layer structurally indistinguishable from that of the overlying graphene layers. This newly formed graphene layer becomes decoupled from the SiC substrate and, along with the other graphene layers within the film, is vertically displaced by ∼2.1 Å. The number of total carbon layers is conserved during the process, and we observe no other structural changes such as interlayer intercalation or expansion of the graphene d-spacing. These results clarify the under-determined structure of hydrogen intercalated QFS-EG/SiC(0001) and provide a precise model to inform further fundamental and practical understanding of the system.

  8. Structural influence on the solid state intermolecular hydrogen bonding of substituted thioureas

    NASA Astrophysics Data System (ADS)

    Venkatachalam, T. K.; Sudbeck, E.; Uckun, F. M.

    2005-09-01

    Several thiourea derivatives have been found to possess biological activity. In particular, phenethyl thiazolyl thiourea derivatives with a heterocyclic ring exhibit potent antiviral activity. These thiourea derivatives were also found to inhibit RT, the reverse transcriptase enzyme, by binding the non-nucleoside inhibitor site of RT. To better understand the nature of the binding of these compounds a detailed crystal structure analysis on these thiourea compounds was undertaken. Here, we report, the results of our X-ray crystal structure study of substituted thiourea compounds. Comparison of the hydrogen bonding characteristics exhibited by structurally distinct thiourea analogs was informative concerning their inter- and intramolecular hydrogen bonding. Additionally, we found that among the thioureas studied, the 2,5-dimethoxy substituted phenethyl thiourea had strong intramolecular hydrogen bonding forming a nine-member ring in the crystal lattice that was absent in the other methoxy substituted phenethyl thioureas examined. Comparison of the structures demonstrated that the presence of a heterocyclic nitrogen atom in the ring results in the formation of a stable six-member ring rather than a nine-member ring.

  9. Direct observation and modelling of ordered hydrogen adsorption and catalyzed ortho-para conversion on ETS-10 titanosilicate material.

    PubMed

    Ricchiardi, Gabriele; Vitillo, Jenny G; Cocina, Donato; Gribov, Evgueni N; Zecchina, Adriano

    2007-06-01

    Hydrogen physisorption on porous high surface materials is investigated for the purpose of hydrogen storage and hydrogen separation, because of its simplicity and intrinsic reversibility. For these purposes, the understanding of the binding of dihydrogen to materials, of the structure of the adsorbed phase and of the ortho-para conversion during thermal and pressure cycles are crucial for the development of new hydrogen adsorbents. We report the direct observation by IR spectroscopic methods of structured hydrogen adsorption on a porous titanosilicate (ETS-10), with resolution of the kinetics of the ortho-para transition, and an interpretation of the structure of the adsorbed phase based on classical atomistic simulations. Distinct infrared signals of o- and p-H2 in different adsorbed states are measured, and the conversion of o- to p-H2 is monitored over a timescale of hours, indicating the presence of a catalyzed reaction. Hydrogen adsorption occurs in three different regimes characterized by well separated IR manifestations: at low pressures ordered 1:1 adducts with Na and K ions exposed in the channels of the material are formed, which gradually convert into ordered 2:1 adducts. Further addition of H2 occurs only through the formation of a disordered condensed phase. The binding enthalpy of the Na+-H2 1:1 adduct is of -8.7+/-0.1 kJ mol(-1), as measured spectroscopically. Modeling of the weak interaction of H2 with the materials requires an accurate force field with a precise description of both dispersion and electrostatics. A novel three body force field for molecular hydrogen is presented, based on the fitting of an accurate PES for the H2-H2 interaction to the experimental dipole polarizability and quadrupole moment. Molecular mechanics simulations of hydrogen adsorption at different coverages confirm the three regimes of adsorption and the structure of the adsorbed phase. PMID:17627319

  10. Structural and electronic properties of free standing one-sided and two-sided hydrogenated silicene: A first principle study

    SciTech Connect

    Mohan, Brij Kumar, Ashok Ahluwalia, P. K.

    2014-04-24

    We performed first-principle study of the structural and electronic properties of two-dimensional hydrogenated silicene for two configurations; one is hydrogenation along one side of silicene sheet and second is hydrogenation in both sides of silicene sheet. The one-side hydrogenated silicene is found stable at planar geometry while increased buckling of 0.725 Å is found for both-side hydrogenated silicene. The result shows that the hydrogenation occupy the extended π-bonding network of silicene, and thus it exhibits semi-conducting behaviour with a band gap of 1.77 eV and 2.19 eV for one-side hydrogenated silicene and both-side hydrogenated silicene respectively. However, both-side hydrogenated silicene of binding energy 4.56 eV is more stable than one-side hydrogenated silicene of binding energy 4.30 eV, but experimentally silicene is synthesized on substrates which interacts one side of silicene layer and only other side is available for H-atoms. Therefore, practically one-side hydrogenation is also important.

  11. Optimizing the Binding Energy of Hydrogen on Nanostructured Carbon Materials through Structure Control and Chemical Doping

    SciTech Connect

    Jie Liu

    2011-02-01

    average diameter size at less than 1 nm. However, initial tests performed at our collaborator’s lab at the National Renewable Energy Laboratory (NREL) did not indicate improved hydrogen sorption properties for the smaller-diameter nanotubes (compared with other types of nanotubes). As work continued, the difficulties in purification, large-scale synthesis, and stability of small diameter SWNTs became a major concern. In 2008, the Department of Energy (DOE) made a no-go decision on future applied R&D investment in pure, undoped, single-walled carbon nanotubes for vehicular hydrogen storage.2 The second phase of the project involved developing a low-cost and scalable approach for the synthesis of microporous carbon materials with well-controlled pore sizes that would be suitable for hydrogen storage. The team studied several approaches, including the use of different zeolites as a template, the use of organic micelle structures as a template, and the slow oxidation of polymer precursors. Among them, the slow activation of Polyether ether ketone (PEEK) under either CO2 environment or H2O vapor produced microporous carbon with an average pore size of less than 2 nm. Initial testing at 77K at both NREL and the California Institute of Technology (CalTech) showed that these materials can store ~5.1 wt% hydrogen (excess) at 40 bar and 77K. The main feature to note with this material is that while the excess gravimetric capacities (>5 wt% at 77K) and specific surface areas (>3100 m2/g) are similar to AX-21 and other “super activated” commercial carbon sorbents at the same temperatures and pressures, due to the smaller pore sizes, bulk densities greater than 0.7 g/ml can be achieved, enabling excess volumetric capacities greater than 35 g/L; more than double that of AX-21.

  12. Synthesis and characterization of MnPS{sub 3} for hydrogen sorption

    SciTech Connect

    Ismail, N.; Temerk, Y.M.; El-Meligi, A.A.; Badr, M.A.; Madian, M.

    2010-05-15

    Single phase MnPS{sub 3} powder was prepared by solid state reaction between Mn, S and P carried out at 650 deg. C in evacuated silica tube. The structure, morphology and sorption characteristics of the prepared solid were investigated. The results revealed that the obtained MnPS{sub 3} compound was capable of adsorbing 3.5 wt% hydrogen at -193 deg. C and a pressure of 30 bar. Little amount of hydrogen (0.07 wt%) was adsorbed at room temperature. The hydrogen adsorption/desorption cycles at various temperatures did not result in irreversible chemical structural changes of the MnPS{sub 3} compound, but the microstructure after hydrogen cycling diminished and became finer. - Graphical abstract: Atomic building of MPS{sub 3}

  13. Structural and atoms-in-molecules analysis of hydrogen-bond network around nitroxides in liquid water.

    PubMed

    Houriez, Céline; Masella, Michel; Ferré, Nicolas

    2010-09-28

    In this study, we investigated the hydrogen-bond network patterns involving the NO moieties of five small nitroxides in liquid water by analyzing nanosecond scale molecular dynamics trajectories. To this end, we implemented two types of hydrogen-bond definitions, based on electronic structure, using Bader's atoms-in-molecules analysis and based on geometric criteria. In each definition framework, the nitroxide/water hydrogen-bond networks appear very variable from a nitroxide to another. Moreover, each definition clearly leads to a different picture of nitroxide hydration. For instance, the electronic structure-based definition predicts a number of hydrogen bonds around the nitroxide NO moiety usually larger than geometric structure-based ones. One particularly interesting result is that the strength of a nitroxide/water hydrogen bond does not depend on its linearity, leading us to question the relevance of geometric definition based on angular cutoffs to study this type of hydrogen bond. Moreover, none of the hydrogen-bond definitions we consider in the present study is able to quantitatively correlate the strength of nitroxide/water hydrogen-bond networks with the aqueous nitroxide spin properties. This clearly exhibits that the hydrogen-bonding concept is not reliable enough to draw quantitative conclusions concerning such properties. PMID:20886951

  14. Structural and atoms-in-molecules analysis of hydrogen-bond network around nitroxides in liquid water

    NASA Astrophysics Data System (ADS)

    Houriez, Céline; Masella, Michel; Ferré, Nicolas

    2010-09-01

    In this study, we investigated the hydrogen-bond network patterns involving the NO moieties of five small nitroxides in liquid water by analyzing nanosecond scale molecular dynamics trajectories. To this end, we implemented two types of hydrogen-bond definitions, based on electronic structure, using Bader's atoms-in-molecules analysis and based on geometric criteria. In each definition framework, the nitroxide/water hydrogen-bond networks appear very variable from a nitroxide to another. Moreover, each definition clearly leads to a different picture of nitroxide hydration. For instance, the electronic structure-based definition predicts a number of hydrogen bonds around the nitroxide NO moiety usually larger than geometric structure-based ones. One particularly interesting result is that the strength of a nitroxide/water hydrogen bond does not depend on its linearity, leading us to question the relevance of geometric definition based on angular cutoffs to study this type of hydrogen bond. Moreover, none of the hydrogen-bond definitions we consider in the present study is able to quantitatively correlate the strength of nitroxide/water hydrogen-bond networks with the aqueous nitroxide spin properties. This clearly exhibits that the hydrogen-bonding concept is not reliable enough to draw quantitative conclusions concerning such properties.

  15. Pressure-Induced Phase Transition in Hydrogen-Bonded Supramolecular Structure: Guanidinium Nitrate

    SciTech Connect

    Wang, Run; Li, Shourui; Wang, Kai; Duan, Defang; Tang, Lingyun; Cui, Tian; Liu, Bingbing; Cui, Qiliang; Liu, Jing; Zou, Bo; Zou, Guangtian

    2010-08-04

    In situ Raman scattering and synchrotron X-ray diffraction have been used to investigate the effects of high pressure on the structural stability of guanidinium nitrate (C(NH{sub 2}){sub 3}{sup +} {center_dot} NO{sub 3}{sup -}, GN), a representative two-dimensional supramolecular architecture of hydrogen-bonded rosette network. This study has confirmed a structural phase transition observed by Raman scattering and X-ray diffraction at {approx}1 GPa and identified it as a space group change from C2 to P2{sub 1}. The high-pressure phase remained stable up to 22 GPa. We discussed the pressure-induced changes in N-H stretching vibration in Raman spectra and proposed that this phase transition is due to the rearrangements of the hydrogen-bonding networks.

  16. Hydrogen storage: beyond conventional methods.

    PubMed

    Dalebrook, Andrew F; Gan, Weijia; Grasemann, Martin; Moret, Séverine; Laurenczy, Gábor

    2013-10-01

    The efficient storage of hydrogen is one of three major hurdles towards a potential hydrogen economy. This report begins with conventional storage methods for hydrogen and broadly covers new technology, ranging from physical media involving solid adsorbents, to chemical materials including metal hydrides, ammonia borane and liquid precursors such as alcohols and formic acid. PMID:23964360

  17. Bibliography of information on mechanics of structural failure (hydrogen embrittlement, protective coatings, composite materials, NDE)

    NASA Technical Reports Server (NTRS)

    Carpenter, J. L., Jr.

    1976-01-01

    This bibliography is comprised of approximately 1,600 reference citations related to four problem areas in the mechanics of failure in aerospace structures. The bibliography represents a search of the literature published in the period 1962-1976, the effort being largely limited to documents published in the United States. Listings are subdivided into the four problem areas: Hydrogen Embrittlement; Protective Coatings; Composite Materials; and Nondestructive Evaluation. An author index is included.

  18. Application of the TEMPEST computer code for simulating hydrogen distribution in model containment structures. [PWR; BWR

    SciTech Connect

    Trent, D.S.; Eyler, L.L.

    1982-09-01

    In this study several aspects of simulating hydrogen distribution in geometric configurations relevant to reactor containment structures were investigated using the TEMPEST computer code. Of particular interest was the performance of the TEMPEST turbulence model in a density-stratified environment. Computed results illustrated that the TEMPEST numerical procedures predicted the measured phenomena with good accuracy under a variety of conditions and that the turbulence model used is a viable approach in complex turbulent flow simulation.

  19. Hydrogenation of single-wall carbon nanotubes using polyamine reagents: combined experimental and theoretical study.

    PubMed

    Miller, Glen P; Kintigh, Jeremy; Kim, Eunja; Weck, Philippe F; Berber, Savas; Tomanek, David

    2008-02-20

    We combine experimental observations with ab initio calculations to study the reversible hydrogenation of single-wall carbon nanotubes using high boiling polyamines as hydrogenation reagents. Our calculations characterize the nature of the adsorption bond and identify preferential adsorption geometries at different coverages. We find the barrier for sigmatropic rearrangement of chemisorbed hydrogen atoms to be approximately 1 eV, thus facilitating surface diffusion and formation of energetically favored, axially aligned adsorbate chains. Chemisorbed hydrogen modifies the structure and stability of nanotubes significantly and increases the inter-tube distance, thus explaining the improved dispersability in solvents like methanol, ethanol, chloroform, and benzene. PMID:18220395

  20. Hydrogen bonded networks in hydrophilic channels: crystal structure of hydrated Ciprofloxacin Lactate and comparison with structurally similar compounds

    NASA Astrophysics Data System (ADS)

    Prasanna, M. D.; Guru Row, T. N.

    2001-01-01

    Ciprofloxacin Lactate {4-(3-carboxy-1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-7-quinolinyl-)-1-piperazinium-lactate-water(1/1/1.5)}(C 20H 24N 3O 6F 1·5H 2O) belonging to the family of fluoroquinolone antibacterial agents with wide spectrum activity has been studied using single crystal X-ray diffraction techniques. The crystal structure has channels running along crystallographic b-axis with π-stacks of Ciprofloxacin moieties linked through water molecules. A ten-membered hydrogen bonded pattern formed by centrosymmetrically related lactate and water molecules fill the center of the channel. The molecular assembly viewed down the b-axis depicts an infinitely extended open framework channels with the major diameter of about 10.60 Å and minor diameter of 4.79 Å. The structure also has a C-H⋯F intramolecular interaction and an intramolecular hydrogen bond. Analysis of the structures containing 7-piperazin-1-oyl-quinolin-4(1H)-one moiety using the Cambridge Structural Database reveals that a majority of the structures show the propensity to form channels via π⋯π interactions. Also, a detailed comparative study with the structure of magnesium sulfate adduct of ciprofloxacin shows that such interactions lead to similar molecular assemblies.

  1. Determination of Hydrogen Bond Structure in Water versus Aprotic Environments To Test the Relationship Between Length and Stability

    SciTech Connect

    Sigala, Paul A.; Ruben, Eliza A.; Liu, Corey W.; Piccoli, Paula M. B.; Hohenstein, Edward G.; Martinez, Todd J.; Schultz, Arthur J.; Herschiag, Daniel

    2015-05-06

    Hydrogen bonds profoundly influence the architecture and activity of biological macromolecules. Deep appreciation of hydrogen bond contributions to biomolecular function thus requires a detailed understanding of hydrogen bond structure and energetics and the relationship between these properties. Hydrogen bond formation energies (Delta G(f)) are enormously more favorable in aprotic solvents than in water, and two classes of contributing factors have been proposed to explain this energetic difference, focusing respectively on the isolated and hydrogen-bonded species: (I) water stabilizes the dissociated donor and acceptor groups much better than aprotic solvents, thereby reducing the driving force for hydrogen bond formation; and (II) water lengthens hydrogen bonds compared to aprotic environments, thereby decreasing the potential energy within the hydrogen bond. Each model has been proposed to provide a dominant contribution to Delta G(f), but incisive tests that distinguish the importance of these contributions are lacking. Here we directly test the structural basis of model II. Neutron crystallography, NMR spectroscopy, and quantum mechanical calculations demonstrate that O-H center dot center dot center dot O hydrogen bonds in crystals, chloroform, acetone, and water have nearly identical lengths and very similar potential energy surfaces despite Delta G(f) differences >8 kcal/mol across these solvents. These results rule out a substantial contribution from solvent-dependent differences in hydrogen bond structure and potential energy after association (model II) and thus support the conclusion that differences in hydrogen bond Delta G(f) are predominantly determined by solvent interactions with the dissociated groups (model I). These findings advance our understanding of universal hydrogen-bonding interactions and have important implications for biology and engineering.

  2. A highly-active and stable hydrogen evolution catalyst based on pyrite-structured cobalt phosphosulfide

    DOE PAGESBeta

    Liu, Wen; Hu, Enyuan; Jiang, Hong; Xiang, Yingjie; Weng, Zhe; Li, Min; Fan, Qi; Yu, Xiqian; Altman, Eric I.; Wang, Hailiang

    2016-02-19

    Rational design and controlled synthesis of hybrid structures comprising multiple components with distinctive functionalities are an intriguing and challenging approach to materials development for important energy applications like electrocatalytic hydrogen production, where there is a great need for cost effective, active and durable catalyst materials to replace the precious platinum. Here we report a structure design and sequential synthesis of a highly active and stable hydrogen evolution electrocatalyst material based on pyrite-structured cobalt phosphosulfide nanoparticles grown on carbon nanotubes. The three synthetic steps in turn render electrical conductivity, catalytic activity and stability to the material. The hybrid material exhibits superiormore » activity for hydrogen evolution, achieving current densities of 10 mA cm–2 and 100 mA cm–2 at overpotentials of 48 mV and 109 mV, respectively. Lastly, phosphorus substitution is crucial for the chemical stability and catalytic durability of the material, the molecular origins of which are uncovered by X-ray absorption spectroscopy and computational simulation.« less

  3. Structure and Hydrogen Bonding of Water in Polyacrylate Gels: Effects of Polymer Hydrophilicity and Water Concentration.

    PubMed

    Mani, Sriramvignesh; Khabaz, Fardin; Godbole, Rutvik V; Hedden, Ronald C; Khare, Rajesh

    2015-12-10

    The ability to tune the hydrophilicity of polyacrylate copolymers by altering their composition makes these materials attractive candidates for membranes used to separate alcohol-water mixtures. The separation behavior of these polyacrylate membranes is governed by a complex interplay of factors such as water and alcohol concentrations, water structure in the membrane, polymer hydrophilicity, and temperature. We use molecular dynamics simulations to investigate the effect of polymer hydrophilicity and water concentration on the structure and dynamics of water molecules in the polymer matrix. Samples of poly(n-butyl acrylate) (PBA), poly(2-hydroxyethyl acrylate) (PHEA), and a 50/50 copolymer of BA and HEA were synthesized in laboratory, and their properties were measured. Model structures of these systems were validated by comparing the simulated values of their volumetric properties with the experimental values. Molecular simulations of polyacrylate gels swollen in water and ethanol mixtures showed that water exhibits very different affinities toward the different (carbonyl, alkoxy, and hydroxyl) functional groups of the polymers. Water molecules are well dispersed in the system at low concentrations and predominantly form hydrogen bonds with the polymer. However, water forms large clusters at high concentrations along with the predominant formation of water-water hydrogen bonds and the acceleration of hydrogen bond dynamics. PMID:26514915

  4. A highly active and stable hydrogen evolution catalyst based on pyrite-structured cobalt phosphosulfide

    NASA Astrophysics Data System (ADS)

    Liu, Wen; Hu, Enyuan; Jiang, Hong; Xiang, Yingjie; Weng, Zhe; Li, Min; Fan, Qi; Yu, Xiqian; Altman, Eric I.; Wang, Hailiang

    2016-02-01

    Rational design and controlled synthesis of hybrid structures comprising multiple components with distinctive functionalities are an intriguing and challenging approach to materials development for important energy applications like electrocatalytic hydrogen production, where there is a great need for cost effective, active and durable catalyst materials to replace the precious platinum. Here we report a structure design and sequential synthesis of a highly active and stable hydrogen evolution electrocatalyst material based on pyrite-structured cobalt phosphosulfide nanoparticles grown on carbon nanotubes. The three synthetic steps in turn render electrical conductivity, catalytic activity and stability to the material. The hybrid material exhibits superior activity for hydrogen evolution, achieving current densities of 10 mA cm-2 and 100 mA cm-2 at overpotentials of 48 mV and 109 mV, respectively. Phosphorus substitution is crucial for the chemical stability and catalytic durability of the material, the molecular origins of which are uncovered by X-ray absorption spectroscopy and computational simulation.

  5. A highly active and stable hydrogen evolution catalyst based on pyrite-structured cobalt phosphosulfide.

    PubMed

    Liu, Wen; Hu, Enyuan; Jiang, Hong; Xiang, Yingjie; Weng, Zhe; Li, Min; Fan, Qi; Yu, Xiqian; Altman, Eric I; Wang, Hailiang

    2016-01-01

    Rational design and controlled synthesis of hybrid structures comprising multiple components with distinctive functionalities are an intriguing and challenging approach to materials development for important energy applications like electrocatalytic hydrogen production, where there is a great need for cost effective, active and durable catalyst materials to replace the precious platinum. Here we report a structure design and sequential synthesis of a highly active and stable hydrogen evolution electrocatalyst material based on pyrite-structured cobalt phosphosulfide nanoparticles grown on carbon nanotubes. The three synthetic steps in turn render electrical conductivity, catalytic activity and stability to the material. The hybrid material exhibits superior activity for hydrogen evolution, achieving current densities of 10 mA cm(-2) and 100 mA cm(-2) at overpotentials of 48 mV and 109 mV, respectively. Phosphorus substitution is crucial for the chemical stability and catalytic durability of the material, the molecular origins of which are uncovered by X-ray absorption spectroscopy and computational simulation. PMID:26892437

  6. ''Inelastic Neutron Scattering and Periodic Density Functional Studies of Hydrogen Bonded Structures''

    SciTech Connect

    Bruce S. Hudson

    2004-10-27

    This project is directed at a fundamental understanding of hydrogen bonding, the primary reversible interaction leading to defined geometries, networks and supramolecular aggregates formed by organic molecules. Hydrogen bonding is still not sufficiently well understood that the geometry of such supramolecular aggregates can be predicted. In the approach taken existing quantum chemical methods capable of treating periodic solids have been applied to hydrogen bonded systems of known structure. The equilibrium geometry for the given space group and packing arrangement were computed and compared to that observed. The second derivatives and normal modes of vibration will then be computed and from this inelastic neutron scattering (INS) spectra were computed using the normal mode eigenvectors to compute spectral intensities. Appropriate inclusion of spectrometer line width and shape was made in the simulation and overtones, combinations and phonon wings were be included. These computed spectra were then compared with experimental results obtained for low-temperature polycrystalline samples at INS spectrometers at several facilities. This procedure validates the computational methodology for describing these systems including both static and dynamic aspects of the material. The resulting description can be used to evaluate the relative free energies of two or more proposed structures and so ultimately to be able to predict which structure will be most stable for a given building block.

  7. A highly active and stable hydrogen evolution catalyst based on pyrite-structured cobalt phosphosulfide

    PubMed Central

    Liu, Wen; Hu, Enyuan; Jiang, Hong; Xiang, Yingjie; Weng, Zhe; Li, Min; Fan, Qi; Yu, Xiqian; Altman, Eric I.; Wang, Hailiang

    2016-01-01

    Rational design and controlled synthesis of hybrid structures comprising multiple components with distinctive functionalities are an intriguing and challenging approach to materials development for important energy applications like electrocatalytic hydrogen production, where there is a great need for cost effective, active and durable catalyst materials to replace the precious platinum. Here we report a structure design and sequential synthesis of a highly active and stable hydrogen evolution electrocatalyst material based on pyrite-structured cobalt phosphosulfide nanoparticles grown on carbon nanotubes. The three synthetic steps in turn render electrical conductivity, catalytic activity and stability to the material. The hybrid material exhibits superior activity for hydrogen evolution, achieving current densities of 10 mA cm−2 and 100 mA cm−2 at overpotentials of 48 mV and 109 mV, respectively. Phosphorus substitution is crucial for the chemical stability and catalytic durability of the material, the molecular origins of which are uncovered by X-ray absorption spectroscopy and computational simulation. PMID:26892437

  8. Molecular hydrogen messengers can lead to structural infidelity: A cautionary tale of protonated glycine

    NASA Astrophysics Data System (ADS)

    Masson, Antoine; Williams, Evan R.; Rizzo, Thomas R.

    2015-09-01

    The effects of tagging protonated glycine with either He or between 1 and 14 H2 molecules on the infrared photodissociation spectra and the ion structure were investigated. Differences in the IR spectra with either a single He atom or H2 molecule attached indicate that even a single H2 molecule can affect the frequencies of some vibrational bands of this simple ion. The protonation site is the preferred location of the tag with He and with up to two H2 molecules, but evidence for H2 attachment to the hydrogen atom of the uncharged carboxylic acid is observed for ions tagged with three or more H2 molecules. This results in a 55 cm-1 red shift in the carboxylic acid OH stretch, and evidence for some structural isomers where the hydrogen bond between the protonated nitrogen and the carbonyl oxygen is partially broken; as a result H2 molecules attached to this site are observed. These results are supported by theory, which indicates that H2 molecules can effectively break this weak hydrogen bond with three or more H2 molecules. These results indicate that large spectral shifts as a result of H2 molecules attaching to sites remote from the charge can occur and affect stretching frequencies as a result of charge transfer, and that tagging with multiple H2 molecules can change the structure of the ion itself.

  9. Deuterated vs Normal Hydrogen Magnetism of M (Mn,Co) Dichloride Monohydrate, and Crystal Structure

    NASA Astrophysics Data System (ADS)

    Pagola, S.; Trowell, K. T.; Havas, K. C.; Reed, Z. D.; Chan, D. G.; Defotis, G. C.

    2011-03-01

    Presented here are susceptibility data for fully deuterated forms of the title materials, and comparison with normal hydrogen forms. Also shown is the first structure determination for any monohydrate compound, for the Mn system with the simplest magnetic behavior to analyze. Interesting similarities and contrasts appear relative to normal hydrogen analogs. For the Co system the location of an enhanced susceptibility maximum, and its magnitude, match very well those of the normal hydrogen form. The deuterated Mn material shows a similar very broad susceptibility maximum as normal material, implying low-dimensional (probably d=1) magnetism, and with indication of a transition somewhat below T(max), presumably due to weak interchain interactions. But, the location of the maximum is at significantly lower temperature than in normal material, and the size is larger; both findings suggest a weaker intrachain interaction. Yet, the apparent transition, near 2.17 K, differs hardly at all in location from that in the normal material. The crystal structure determination for the normal Mn system provides the first evidence of a structural reason for the low dimensional magnetism observed, in that somewhat isolated magnetic chains are apparent.

  10. Hydrogen-induced change in core structures of {110}[111] edge and {110}[111] screw dislocations in iron

    PubMed Central

    Wang, Shuai; Hashimoto, Naoyuki; Ohnuki, Somei

    2013-01-01

    Employing the empirical embedded-atom method potentials, the evolution of edge and screw dislocation core structure is calculated at different hydrogen concentrations. With hydrogen, the core energy and Peierls potential are reduced for all dislocations. A broaden-core and a quasi-split core structure are observed for edge and screw dislocation respectively. The screw dislocation and hydrogen interaction in body-centred cubic iron is found to be not mainly due to the change of elastic modulus, but the variation of dislocation core structure. PMID:24067268

  11. A Multi-technique Characterization of Adsorbed Protein Films: Orientation and Structure by ToF-SIMS, NEXAFS, SFG, and XPS

    NASA Astrophysics Data System (ADS)

    Baio, Joseph E.

    There are many techniques that allow surface scientists to study interfaces. However, few are routinely applied to probe biological surfaces. The work presented here demonstrates how detailed information about the conformation, orientation, chemical state, and molecular structure of biological molecules immobilized onto a surface can be assessed by electron spectroscopy, mass spectrometry, and nonlinear vibrational spectroscopy techniques. This investigation began with the development of simple model systems (small proteins, and peptides) and evolved into a study of more complex --- real world systems. Initially, two model systems based on the chemical and electrostatic immobilization of a small rigid protein (Protein G B1 domain, 6kDa) were built to develop the capabilities of time-of-flight secondary ion mass spectrometry (ToFSIMS), near edge X-ray absorption fine structure spectroscopy (NEXAFS) and sum frequency generation (SFG) spectroscopy as tools to probe the structure of surface immobilized proteins. X-ray photoelectron spectroscopy (XPS) was used to measure the amount of immobilized protein and ToF-SIMS sampled the amino acid composition of the exposed surface of the protein film. Within the ToF-SIMS spectra, an enrichment of secondary ions from amino acids located at opposite ends of the proteins were used to describe protein orientation. SFG spectral peaks characteristic of ordered alpha-helix and beta-sheet elements were observed for both systems and the phase of the peaks indicated a predominantly upright orientation for both the covalent and electrostatic configurations. Polarization dependence of the NEXAFS signal from the N 1s to pi* transition of the peptide bonds that make up the beta-sheets also indicated protein ordering at the surface. Building upon the Protein G B1 studies, the orientation and structure of a surface immobilized antibody (HuLys Fv: variant of humanized anti-lysozyme variable fragment, 26kDa) was characterized across two

  12. Observation of nuclear quadrupole hyperfine structure in the infrared spectrum of hydrogen iodide using a tunable-diode laser

    NASA Technical Reports Server (NTRS)

    Strow, L. L.

    1980-01-01

    Nuclear quadrupole hyperfine structure has been observed in the 1-0 vibration-rotation band of hydrogen iodide with a tunable-diode laser. The measured splittings agree well with microwave measurements of the HI molecule. Evidence for a slight change in the iodine nuclear quadrupole coupling constant from the ground to first excited vibrational state in hydrogen iodide was found.

  13. Influences of Dilute Organic Adsorbates on the Hydration of Low-Surface-Area Silicates.

    PubMed

    Sangodkar, Rahul P; Smith, Benjamin J; Gajan, David; Rossini, Aaron J; Roberts, Lawrence R; Funkhouser, Gary P; Lesage, Anne; Emsley, Lyndon; Chmelka, Bradley F

    2015-07-01

    Competitive adsorption of dilute quantities of certain organic molecules and water at silicate surfaces strongly influence the rates of silicate dissolution, hydration, and crystallization. Here, we determine the molecular-level structures, compositions, and site-specific interactions of adsorbed organic molecules at low absolute bulk concentrations on heterogeneous silicate particle surfaces at early stages of hydration. Specifically, dilute quantities (∼0.1% by weight of solids) of the disaccharide sucrose or industrially important phosphonic acid species slow dramatically the hydration of low-surface-area (∼1 m(2)/g) silicate particles. Here, the physicochemically distinct adsorption interactions of these organic species are established by using dynamic nuclear polarization (DNP) surface-enhanced solid-state NMR techniques. These measurements provide significantly improved signal sensitivity for near-surface species that is crucial for the detection and analysis of dilute adsorbed organic molecules and silicate species on low-surface-area particles, which until now have been infeasible to characterize. DNP-enhanced 2D (29)Si{(1)H}, (13)C{(1)H}, and (31)P{(1)H} heteronuclear correlation and 1D (29)Si{(13)C} rotational-echo double-resonance NMR measurements establish hydrogen-bond-mediated adsorption of sucrose at distinct nonhydrated and hydrated silicate surface sites and electrostatic interactions with surface Ca(2+) cations. By comparison, phosphonic acid molecules are found to adsorb electrostatically at or near cationic calcium surface sites to form Ca(2+)-phosphonate complexes. Although dilute quantities of both types of organic molecules effectively inhibit hydration, they do so by adsorbing in distinct ways that depend on their specific architectures and physicochemical interactions. The results demonstrate the feasibility of using DNP-enhanced NMR techniques to measure and assess dilute adsorbed molecules and their molecular interactions on low

  14. Electronic Structure of Hydrogen Donors in Semiconductors and Insulators Probed by Muon Spin Rotation

    NASA Astrophysics Data System (ADS)

    Shimomura, Koichiro; Ito, Takashi U.

    2016-09-01

    Hydrogen in semiconductors and insulators plays a crucial role in their electric conductivity. Substantial experimental and theoretical efforts have been made to establish this hypothesis in the last decade, and the muon spin rotation technique has played a pioneering role. Positive muons implanted into such low-carrier systems often form a muonium (an analogue of hydrogen, the bound state of a positive muon and an electron). Although its dynamical aspect may be different from the heavier hydrogen, the electronic structure of the muonium is expected to be identical to that of hydrogen after a small correction of the reduced mass (˜0.4%). Since the discovery of a shallow muonium in CdS, its properties have been intensively studied in many semiconductors and insulators, and then it was interpreted as a possible origin of n-type conductivity under the context of a classical shallow donor model. In this article, we will describe the principle of muonium experiments and survey recent achievements in this field.

  15. Effect of Hydrogen on Interfacial Structure and Adhesion of Metal/Al_2O_3

    NASA Astrophysics Data System (ADS)

    Wang, Xiao-Gang; Scheffler, Matthias

    2001-03-01

    Metal/sapphire interfaces have been intensively studying because of their importance in many technological applications. A large work of adhesion was found for the oxygen-terminated Al_2O_3(0001)/metal interfaces. As well known, the clean oxygen-terminated Al_2O3 surface is not stable even under a high oxygen pressure[1]. The understanding of how the oxygen-terminated interfaces can be formed is limited. Using an ab initio full-potential linearized augmented plane wave method, we investigated the effect of hydrogen on the formation of metal/Al_2O_3(0001) interfaces. Our results reveal that hydrogen plays an important role in the formation of the oxygen-terminated interfaces. Hydrogen impurities greatly decrease the work of adhesion. The behavior of hydrogen in deposition process of ultrathin metal films on sapphire substrates and the possible structures of the ultrathin films are discussed also. [1] Xiao-Gang Wang, Anne Chaka, Matthias Scheffler, Phys. Rev. Lett. 84, 3650 (2000).

  16. Improvement of Structure-Based Potentials for Protein Folding by Native and Nonnative Hydrogen Bonds

    PubMed Central

    Enciso, Marta; Rey, Antonio

    2011-01-01

    Pure Gō models (where every native interaction equally stabilizes the folded state) have widely proved their convenience in the computational investigation of protein folding. However, a chemistry-based description of the real interactions also provides a desirable tune in the analysis of the folding process, and thus some hybrid Gō potentials that combine both aspects have been proposed. Among all the noncovalent interactions that contribute to protein folding, hydrogen bonds are the only ones with a partial covalent character. This feature makes them directional and, thus, more difficult to model as part of the coarse-grained descriptions that are typically employed in Gō models. Thanks to a simplified but rigorous representation of backbone hydrogen bonds that we have recently proposed, we present in this article a combined potential (Gō + backbone hydrogen bond) to study the thermodynamics of protein folding in the frame of very simple simulation models. We show that the explicit inclusion of hydrogen bonds leads to a systematic improvement in the description of protein folding. We discuss a representative set of examples (from two-state folders to downhill proteins, with different types of native structures) that reveal a relevant agreement with experimental data. PMID:21943429

  17. A systematic structural study of halogen bonding versus hydrogen bonding within competitive supramolecular systems

    PubMed Central

    Aakeröy, Christer B.; Spartz, Christine L.; Dembowski, Sean; Dwyre, Savannah; Desper, John

    2015-01-01

    As halogen bonds gain prevalence in supramolecular synthesis and materials chemistry, it has become necessary to examine more closely how such interactions compete with or complement hydrogen bonds whenever both are present within the same system. As hydrogen and halogen bonds have several fundamental features in common, it is often difficult to predict which will be the primary interaction in a supramolecular system, especially as they have comparable strength and geometric requirements. To address this challenge, a series of molecules containing both hydrogen- and halogen-bond donors were co-crystallized with various monotopic, ditopic symmetric and ditopic asymmetric acceptor molecules. The outcome of each reaction was examined using IR spectroscopy and, whenever possible, single-crystal X-ray diffraction. 24 crystal structures were obtained and subsequently analyzed, and the synthon preferences of the competing hydrogen- and halogen-bond donors were rationalized against a background of calculated molecular electrostatic potential values. It has been shown that readily accessible electrostatic potentials can offer useful practical guidelines for predicting the most likely primary synthons in these co-crystals as long as the potential differences are weighted appropriately. PMID:26306192

  18. Reverse hydrogen spillover on and hydrogenation of supported metal clusters: insights from computational model studies.

    PubMed

    Vayssilov, Georgi N; Petrova, Galina P; Shor, Elena A Ivanova; Nasluzov, Vladimir A; Shor, Alexei M; St Petkov, Petko; Rösch, Notker

    2012-05-01

    "Reverse" spillover of hydrogen from hydroxyl groups of the support onto supported transition metal clusters, forming multiply hydrogenated metal species, is an essential aspect of various catalytic systems which comprise small, highly active transition metal particles on a support with a high surface area. We review and analyze the results of our computational model studies related to reverse hydrogen spillover, interpreting available structural and spectral data for the supported species and examining the relationship between metal-support and metal-hydrogen interactions. On the examples of small clusters of late transition metals, adsorbed in zeolite cavities, we showed with computational model studies that reverse spillover of hydrogen is energetically favorable for late transition metals, except for Au. This preference is crucial for the chemical reactivity of such bifunctional catalytic systems because both functions, of metal species and of acidic sites, are strongly modified, in some cases even suppressed - due to partial oxidation of the metal cluster and the conversion of protons from acidic hydroxyl groups to hydride ligands of the metal moiety. Modeling multiple hydrogen adsorption on metal clusters allowed us to quantify how (i) the support affects the adsorption capacity of the clusters and (ii) structure and oxidation state of the metal moiety changes upon adsorption. In all models of neutral systems we found that the metal atoms are partially positively charged, compensated by a negative charge of the adsorbed hydrogen ligands and of the support. In a case study we demonstrated with calculated thermodynamic parameters how to predict the average hydrogen coverage of the transition metal cluster at a given temperature and hydrogen pressure. PMID:22353996

  19. Turning things downside up: Adsorbate induced water flipping on Pt(111)

    SciTech Connect

    Kimmel, Greg A. E-mail: bruce.kay@pnnl.gov; Zubkov, Tykhon; Smith, R. Scott; Petrik, Nikolay G.; Kay, Bruce D. E-mail: bruce.kay@pnnl.gov

    2014-11-14

    We have examined the adsorption of the weakly bound species N{sub 2}, O{sub 2}, CO, and Kr on the (√(37)×√(37))R25.3{sup ∘} water monolayer on Pt(111) using a combination of molecular beam dosing, infrared reflection absorption spectroscopy, and temperature programmed desorption. In contrast to multilayer crystalline ice, the adsorbate-free water monolayer is characterized by a lack of dangling OH bonds protruding into the vacuum (H-up). Instead, the non-hydrogen-bonded OH groups are oriented downward (H-down) to maximize their interaction with the underlying Pt(111) substrate. Adsorption of Kr and O{sub 2} have little effect on the structure and vibrational spectrum of the “√(37)” water monolayer while adsorption of both N{sub 2}, and CO are effective in “flipping” H-down water molecules into an H-up configuration. This “flipping” occurs readily upon adsorption at temperatures as low as 20 K and the water monolayer transforms back to the H-down, “√(37)” structure upon adsorbate desorption above 35 K, indicating small energy differences and barriers between the H-down and H-up configurations. The results suggest that converting water in the first layer from H-down to H-up is mediated by the electrostatic interactions between the water and the adsorbates.

  20. A regenerable oxide-based H2S adsorbent with nanofibrous morphology

    NASA Astrophysics Data System (ADS)

    Behl, Mayank; Yeom, Junghoon; Lineberry, Quentin; Jain, Prashant K.; Shannon, Mark A.

    2012-12-01

    Hydrogen sulphide is found in raw fuels such as natural gas and coal/biomass-derived syngas. It is poisonous to catalysts and corrosive to metals and therefore needs to be removed. This is often achieved using metal oxides as reactive adsorbents, but metal oxides perform poorly when subjected to repeated cycles of sulphidation and re-oxidation as a result of complex structural and chemical changes. Here, we show that Zn-Ti-O-based adsorbents with nanofibrous morphology can sustain their initial reactivity and sulphur removal capacity over multiple regeneration cycles. These nanostructured sorbents offer rapid reaction rates that overcome the gas-transport limitations of conventional pellet-based sorbents and allow all of the material to be used efficiently. Regeneration can be carried out at the same temperature as the sulphidation step because of the higher reactivity, which prevents sorbent deterioration and reduces energy use. The efficient regeneration of the adsorbent is also aided by structural features such as the growth of hierarchical nanostructures and preferential stabilization of a wurtzite phase in the sulphidation product.

  1. Turning things downside up: Adsorbate induced water flipping on Pt(111)

    SciTech Connect

    Kimmel, Gregory A.; Zubkov, Tykhon; Smith, R. Scott; Petrik, Nikolay G.; Kay, Bruce D.

    2014-11-14

    We have examined the adsorption of the weakly bound species N2, O2, CO and Kr on the water monolayer on Pt(111) using a combination of molecular beam dosing, infrared reflection absorption spectroscopy (IRAS), and temperature programmed desorption (TPD). In contrast to multilayer crystalline ice, the adsorbate-free water monolayer is characterized by a lack of dangling OH bonds protruding into the vacuum (H-up). Instead, the non-hydrogen-bonded OH groups are oriented downward (H-down) to maximize their interaction with the underlying Pt(111) substrate. Adsorption of Kr and O2 have little effect on the structure and vibrational spectrum of the “ ” water monolayer while adsorption of both N2, and CO are effective in “flipping” H-down water molecules into an H-up configuration. This “flipping” occurs readily upon adsorption at temperatures as low as 20 K and the water monolayer transforms back to the H-down, “ ” structure upon adsorbate desorption above 35 K, indicating small energy differences and barriers between the H-down and H-up configurations. The results suggest that converting water in the first layer from H-down to H-up is mediated by the electrostatic interactions between the water and the adsorbates.

  2. Microwave spectrum and molecular structure of the 1-chloro-1-fluoroethylene-hydrogen fluoride complex

    NASA Astrophysics Data System (ADS)

    Leung, Helen O.; Marshall, Mark D.; Bozzi, Aaron T.; Cohen, Paul M.; Lam, Mable

    2011-05-01

    Guided by ab initio calculations, Fourier transform microwave spectra in the 8-22 GHz region are obtained for six isotopomers of the complex formed between 1-chloro-1-fluoroethylene and hydrogen fluoride. These include both 35Cl- and 37Cl-containing CH 2CClF with HF and DF, as well as 13CH 2C 35ClF and CH 213C 35ClF with HF. Analysis of the spectra determines the rotational constants, the complete chlorine quadrupole hyperfine coupling tensors in both the inertial and principal electric field gradient axis systems, and where appropriate, the diagonal components of the deuterium quadrupole coupling tensors. Spin-spin hyperfine structure is resolved and analyzed for CH 2C 35ClF-HF and CH 2C 37ClF-HF. The inertial information contained in the rotational constants combined with the HF and DF hyperfine interaction constants provides the structure for CH 2CClF-HF: a primary, hydrogen bonding interaction existing between the HF donor and the F atom acceptor on the 1-chloro-1-fluoroethylene moiety, while a secondary interaction occurs between the fluorine atom on the HF molecule and the H atom cis to the hydrogen-bonded F atom on the substituted ethylene, which causes the hydrogen bond to deviate from linearity. This is analogous to the structure obtained for 1-chloro-1-fluoroethylene-acetylene [H.O. Leung, M.D. Marshall, D.D. Grimes, J. Chem. Phys. 134 (2011) 034303] and similar to that of 1,1-difluoroethylene-HF [H.O. Leung, M.D. Marshall, T.L. Drake, T. Pudlik, N. Savji, D.W. McCune, J. Chem. Phys. 131 (2009) 204301], and indeed as with the acetylene complexes, to within experimental uncertainty, the intermolecular interactions in CH 2CClF-HF and its 1,1-difluoroethylene counterpart are practically indistinguishable.

  3. Effect of pressure on the structure and dynamics of hydrogen bonds in ethylene glycol-water mixtures: Numerical simulation data

    NASA Astrophysics Data System (ADS)

    Antipova, M. L.; Gurina, D. L.; Makarov, D. M.; Egorov, G. I.; Petrenko, V. E.

    2016-03-01

    Water-ethylene glycol mixtures containing from 0.002 to 0.998 mole fractions of ethylene glycol at T = 298.15 K and P = 0.1 and 100 MPa are simulated by means of classical molecular dynamics. Such structural and dynamic characteristics of hydrogen bonds as the average number and lifetime, along with the distribution of molecules over the number of hydrogen bonds, are calculated; their changes are analyzed, depending on the mixture's composition and pressure. It is shown that the components are characterized by a high degree of interpenetration and form a uniform infinite hydrogen-bonded cluster over the range of concentrations. It is found that the higher the concentration of ethylene glycol, the greater the stability of all hydrogen bonds. It is concluded that an increase in pressure lowers the number of hydrogen bonds, while the average lifetime of the remaining hydrogen bonds grows.

  4. Model creation and electronic structure calculation of amorphous hydrogenated boron carbide

    NASA Astrophysics Data System (ADS)

    Belhadj Larbi, Mohammed

    Boron-rich solids are of great interest for many applications, particularly, amorphous hydrogenated boron carbide (a-BC:H) thin films are a leading candidate for numerous applications such as: heterostructure materials, neutron detectors, and photovoltaic energy conversion. Despite this importance, the local structural properties of these materials are not well-known, and very few theoretical studies for this family of disordered solids exist in the literature. In order to optimize this material for its potential applications the structure property relationships need to be discovered. We use a hybrid method in this endeavor---which is to the best of our knowledge the first in the literature---to model and calculate the electronic structure of amorphous hydrogenated boron carbide (a-BC:H). A combination of classical molecular dynamics using the Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) and ab initio quantum mechanical simulations using the Vienna ab initio simulation package (VASP) have been conducted to create geometry optimized models that consist of a disordered hydrogenated twelve-vertex boron carbide icosahedra, with hydrogenated carbon cross-linkers. Then, the density functional theory (DFT) based orthogonalized linear combination of atomic orbitals (OLCAO) method was used to calculate the total and partial density of states (TDOS, PDOS), the complex dielectric function epsilon, and the radial pair distribution function (RPDF). The RPDF data stand as predictions that may be compared with future experimental electron or neutron diffraction data. The electronic structure simulations were not able to demonstrate a band gap of the same nature as that seen in prior experimental work, a general trend of the composition-properties relationship was established. The content of hydrogen and boron was found to be directly proportional to the decrease in the number of available states near the fermi energy, and inversely proportional to the

  5. Electronic structures of hybrid graphene/boron nitride nanoribbons with hydrogen adsorption

    NASA Astrophysics Data System (ADS)

    Lee, Chi-Hsuan; Yang, Chih-Kai

    Electronic properties of hybrid graphene/boron nitride nanoribbons are investigated using density functional calculations. It is found that hydrogen adsorption on a graphene nanoribbon alters band structures drastically. Furthermore, H-vacancy chains and lines can effectively shape the conduction properties. Influences of edge atoms with nonzero magnetic moments and the interface between B and N are also prominent in the electronic structures. This work was supported by the Ministry of Science and Technology of the Republic of China under Grant Number MOST 104-2112-M-004-003.

  6. Microscopic structure factor of liquid hydrogen by neutron-diffraction measurements

    NASA Astrophysics Data System (ADS)

    Celli, M.; Bafile, U.; Cuello, G. J.; Formisano, F.; Guarini, E.; Magli, R.; Neumann, M.; Zoppi, M.

    2005-01-01

    The center-of-mass structure factor of liquid para hydrogen has been measured, using neutron diffraction, in four thermodynamic states close to the triple point. Path integral Monte Carlo simulations have been carried out at the same temperatures and densities. The present experimental data are in reasonable quantitative agreement with the simulations and closer to these results than previous neutron determinations available in the literature. The thermodynamic derivatives of the structure factor, from both experiment and simulation, have been compared to previous measurements obtaining a quantitative consistency.

  7. A molecular dynamics study of ethanol-water hydrogen bonding in binary structure I clathrate hydrate with CO2

    NASA Astrophysics Data System (ADS)

    Alavi, Saman; Ohmura, Ryo; Ripmeester, John A.

    2011-02-01

    Guest-host hydrogen bonding in clathrate hydrates occurs when in addition to the hydrophilic moiety which causes the molecule to form hydrates under high pressure-low temperature conditions, the guests contain a hydrophilic, hydrogen bonding functional group. In the presence of carbon dioxide, ethanol clathrate hydrate has been synthesized with 10% of large structure I (sI) cages occupied by ethanol. In this work, we use molecular dynamics simulations to study hydrogen bonding structure and dynamics in this binary sI clathrate hydrate in the temperature range of 100-250 K. We observe that ethanol forms long-lived (>500 ps) proton-donating and accepting hydrogen bonds with cage water molecules from both hexagonal and pentagonal faces of the large cages while maintaining the general cage integrity of the sI clathrate hydrate. The presence of the nondipolar CO2 molecules stabilizes the hydrate phase, despite the strong and prevalent alcohol-water hydrogen bonding. The distortions of the large cages from the ideal form, the radial distribution functions of the guest-host interactions, and the ethanol guest dynamics are characterized in this study. In previous work through dielectric and NMR relaxation time studies, single crystal x-ray diffraction, and molecular dynamics simulations we have observed guest-water hydrogen bonding in structure II and structure H clathrate hydrates. The present work extends the observation of hydrogen bonding to structure I hydrates.

  8. Changes in protein structure monitored by use of gas‐phase hydrogen/deuterium exchange

    PubMed Central

    Beeston, Helen S.; Ault, James R.; Pringle, Steven D.; Brown, Jeffery M.

    2015-01-01

    The study of protein conformation by solution‐phase hydrogen/deuterium exchange (HDX) coupled to MS is well documented. This involves monitoring the exchange of backbone amide protons with deuterium and provides details concerning the protein's tertiary structure. However, undesired back‐exchange during post‐HDX analyses can be difficult to control. Here, gas‐phase HDX‐MS, during which labile hydrogens on amino acid side chains are exchanged in sub‐millisecond time scales, has been employed to probe changes within protein structures. Addition of the solvent 2,2,2‐trifluoroethanol to a protein in solution can affect the structure of the protein, resulting in an increase in secondary and/or tertiary structure which is detected using circular dichroism. Using a Synapt G2‐S ESI‐mass spectrometer modified to allow deuterated ammonia into the transfer ion guide (situated between the ion mobility cell and the TOF analyser), gas‐phase HDX‐MS is shown to reflect minor structural changes experienced by the proteins β‐lactoglobulin and ubiquitin, as observed by the reduction in the level of deuterium incorporation. Additionally, the use of gas‐phase HDX‐MS to distinguish between co‐populated proteins conformers within a solution is demonstrated with the disordered protein calmodulin; the gas‐phase HDX‐MS results correspond directly with complementary data obtained by use of ion mobility spectrometry‐MS. PMID:25603979

  9. Electronic structure of graphene on a reconstructed Pt(100) surface: Hydrogen adsorption, doping, and band gaps

    NASA Astrophysics Data System (ADS)

    Ulstrup, Søren; Nilsson, Louis; Miwa, Jill A.; Balog, Richard; Bianchi, Marco; Hornekær, Liv; Hofmann, Philip

    2013-09-01

    We probe the structure and electronic band structure of graphene grown on a Pt(100) substrate using scanning tunneling microscopy, low energy electron diffraction, and angle-resolved photoemission spectroscopy. It is found that the graphene layer lacks a well-defined azimuthal orientation with respect to the substrate, causing a circular smearing of the π band instead of a well-defined Dirac cone near the Fermi level. The graphene is found to be electron doped placing the Dirac point ˜0.45 eV below the Fermi level, and a gap of 0.15±0.03 eV is found at the Dirac point. We dose atomic hydrogen and monitor the coverage on the graphene by analyzing the impurity-induced broadening of the π-band width. Saturation of graphene on Pt(100) with hydrogen does not expand the band gap, but instead hydrogen-mediated broadening and rehybridization of the graphene sp2 bonds into sp3 leads to a complete disruption of the graphene π band, induces a lifting of the Pt(100) reconstruction, and introduces a dispersing Pt state near the Fermi level. Deposition of rubidium on graphene on Pt(100) leads to further electron doping, pushing the Dirac point to a binding energy of ˜1.35 eV, and increasing the band gap to 0.65±0.04 eV.

  10. Zooming in: Structural Investigations of Rheologically Characterized Hydrogen-Bonded Low-Methoxyl Pectin Networks.

    PubMed

    Mansel, Bradley W; Chu, Che-Yi; Leis, Andrew; Hemar, Yacine; Chen, Hsin-Lung; Lundin, Leif; Williams, Martin A K

    2015-10-12

    Self-assembled hydrogen-bonded networks of the polysaccharide pectin, a mechanically functional component of plant cell walls, have been of recent interest as biomimetic exemplars of physical gels, and the microrheological and strain-stiffening behaviors have been previously investigated. Despite this detailed rheological characterization of preformed gels, little is known about the fundamental arrangement of the polymers into cross-linking junction zones, the size of these bonded regions, and the resultant network architecture in these hydrogen-bonded materials, especially in contrast to the plethora of such information available for their well-known calcium-assembled counterparts. In this work, in concert with pertinent rheological measurements, an in-depth structural study of the hydrogen-bond-mediated gelation of pectins is provided. Gels were realized by using glucona-delta-lactone to decrease the pH of solutions of pectic polymers that had a (blockwise) low degree of methylesterification. Small-angle X-ray scattering and transmission electron microscopy were utilized to access structural information on length scales on the order of nanometers to hundreds of nanometers, while complementary mechanical properties were measured predominantly using small amplitude oscillatory shear rheology. PMID:26291120

  11. Structural, morphological, magnetic and hydrogen absorption properties of LaNi5 alloy: A comprehensive study

    NASA Astrophysics Data System (ADS)

    Sarhaddi, Reza; Arabi, Hadi; Pourarian, Faiz

    2014-04-01

    A comprehensive study of structural, morphological, magnetic and hydrogen absorption properties of LaNi5-H system was investigated. The X-ray diffraction patterns show that as-synthesized LaNi5 alloy is single phase with CaCu5-type structure while some weak peaks of elemental nickel also appeared after several hydrogenation/dehydrogenation (H/D) cycling. The presence of pure Ni was also followed using the room temperature magnetic measurements. After H/D cycling, the particle size decreases and particle size distribution was found nearly uniform compared to noncycled alloy. The pressure-composition isotherms (PCIs) of the hydrogen absorption reaction were determined in the temperature range 20-80°C using a homemade Sievert's type experimental apparatus, and then the enthalpy and entropy of hydride formation were calculated. The hydriding kinetic mechanism of LaNi5 was evaluated using the different fitting models: Jander diffusion model (JDM), Johnson-Mehl-Avrami (JMA) and Chou models. All employed models confirm an increase in the hydriding reaction rate with temperature. However, the calculated results using JMA model show a better agreement with the experimental data and hence we believe that diffusion along with nucleation and growth is the rate-controlling step for the hydriding reaction. The values of activation energy for hydriding reaction were also obtained by JD and JMA models.

  12. Hydrogen-induced changes of the microscopic structure of microcrystalline silicon

    SciTech Connect

    Kaiser, I.; Nickel, N.H.; Fuhs, W.; Pilz, W.

    1998-12-31

    Microcrystalline silicon samples were exposed to an electron cyclotron resonance (ECR) hydrogen plasma at various exposure times and substrate temperatures. Before and after each post-hydrogenation treatment the crystalline fraction, X{sub c}, was determined from Raman backscattering spectra. The results reveal that the change of X{sub c} strongly depends on the structural composition of the starting material. Amorphous samples exhibit an increase of X{sub c} while for {micro}c-Si specimens the X{sub c} decreases. The decrease of X{sub c} is enhanced for specimens with a high initial crystalline fraction. The same plasma treatment of Si-wafers did not lead to amorphization. The authors conclude that the presence of lattice strain is required to observe a H-induced decrease of X{sub c}.

  13. The structural, electrical, and optical properties of hydrogenated chromium-doped CdO films

    SciTech Connect

    Dakhel, A.A.; Hamad, H.

    2013-12-15

    Cadmium oxide thin films doped with different amounts of chromium and annealed in hydrogen atmosphere have been grown on glass substrates by means of physical vapour deposition (PVD) method. The structural, electrical, and optical properties of the prepared Cr-doped CdO (CdO:Cr–H) films were systematically studied. The structural investigations show that the incorporated Cr ions mainly occupied locations in interstitial positions of CdO lattice. The bandgap engineer by Cr incorporation and hydrogenation were studied. The variations of the electrical parameters of CdO:Cr–H films with Cr incorporation and hydrogenation were investigated. It was established that among the investigated samples, the largest mobility and conductivity were measured with 1.5%:Cr–H film. Therefore, hydrogenated CdO:Cr films can be effectively used in different applications of near infrared-transparent-conducting-oxide (NIR-TCO). - Graphical abstract: Optoelectronic properties of synthesised chromium-doped CdO thin films. It was established that the largest mobility (53.4 cm{sup 2}/V.s) and conductivity (2136.8 S/cm) were measured in 1.5%:Cr–H doped CdO film. Therefore, such films can be effectively used in near infrared-transparent-conducting-oxide (NIR-TCO). - Highlights: • The properties of CdO films annealed in H{sub 2} gas were systematically studied. • Cr{sup 3+} ions most likely occupied interstitial locations in CdO lattice and as donors. • Improvement of conductivity parameters with Cr doping and H annealing. • Bandgap narrowing observed with Cd-doping.

  14. Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures.

    PubMed

    Deepak, R N V Krishna; Sankararamakrishnan, Ramasubbu

    2016-05-10

    Contrary to DNA double-helical structures, hydrogen bonds (H-bonds) involving nitrogen as the acceptor are not common in protein structures. We systematically searched N-H…N H-bonds in two different sets of protein structures. Data set I consists of neutron diffraction and ultrahigh-resolution x-ray structures (0.9 Å resolution or better) and the hydrogen atom positions in these structures were determined experimentally. Data set II contains structures determined using x-ray diffraction (resolution ≤ 1.8 Å) and the positions of hydrogen atoms were generated using a computational method. We identified 114 and 14,347 potential N-H…N H-bonds from these two data sets, respectively, and 56-66% of these were of the Ni+1-Hi+1…Ni type, with Ni being the proline backbone nitrogen. To further understand the nature of such unusual contacts, we performed quantum chemical calculations on the model compound N-acetyl-L-proline-N-methylamide (Ace-Pro-NMe) with coordinates taken from the experimentally determined structures. A potential energy profile generated by varying the ψ dihedral angle in Ace-Pro-NMe indicates that the conformation with the N-H…N H-bond is the most stable. An analysis of H-bond-forming proline residues reveals that more than 30% of the proline carbonyl groups are also involved in n → π(∗) interactions with the carbonyl carbon of the preceding residue. Natural bond orbital analyses demonstrate that the strength of N-H…N H-bonds is less than half of that observed for a conventional H-bond. This study clearly establishes the H-bonding capability of proline nitrogen and its prevalence in protein structures. We found many proteins with multiple instances of H-bond-forming prolines. With more than 15% of all proline residues participating in N-H…N H-bonds, we suggest a new, to our knowledge, structural role for proline in providing stability to loops and capping regions of secondary structures in proteins. PMID:27166805

  15. Adsorption of molecular hydrogen on Pd(Pt) decorated graphene

    NASA Astrophysics Data System (ADS)

    Adhikari, Narayan; Khaniya, Asim; Lamichhane, Saran; Pantha, Nurapati

    2015-03-01

    We have performed the first-principles based Density Functional Theory (DFT) calculations to study the stability, geometrical structures, and electronic properties of a Pd(Pt) atom adsorbed graphene to investigate the possibility of using Pd(Pt) decorated graphene as energy storage materials with reference to pristine graphene. The London dispersion forces have been incorporated by the DFT-D2 levels of calculations implemented in Quantum Espresso packages. Our findings show that Pd and Pt both adsorb on graphene at Bridge site. The electronic structures of Pd(Pt) adsorbed graphene possesses band gap opening due to breaking of the symmetry of graphene. Further we have studied the adsorption of moelcular hydrogen ((H 2) n , n = 1-7) on the Pd(Pt)-graphene system. The adatom Pd(Pt) enhances the binding energy per hydrogen molecule in Pd(Pt)-graphene system in comparison to that in the pristine graphene. The binding energy per hydrogen molecule of the adatom-graphene system decreases as the number of H 2 molecules increases and finally it saturates to 0.15 eV (0.16 eV) per hydrogen molecule for Pd-graphene (Pt-graphene) systems respectively. ICTP-NET 56/TWAS.

  16. Local structure reconstruction in hydrogenated amorphous silicon from angular correlation and synchrotron diffraction studies

    NASA Astrophysics Data System (ADS)

    Britton, D. T.; Minani, E.; Knoesen, D.; Schut, H.; Eijt, S. W. H.; Furlan, F.; Giles, C.; Härting, M.

    2006-02-01

    Hydrogenated amorphous silicon (a-Si:H) is a widely used thin film semiconductor material which is still incompletely understood. It is generally assumed to form a continuous random network, with a high concentration of coordination defects (dangling bonds), which are hydrogen terminated. Neither the exact nature of these sites nor the degree of medium range order has been fully determined. In this paper, we present the first results for the local structure, from a combined study using angular correlation of positron annihilation radiation (ACAR) and synchrotron radiation diffraction. Reciprocal space information is obtained directly, for the mesoscale structure and the local defect structure, from the orientation dependent diffraction and 2D-ACAR patterns, respectively. Furthermore, inversion of both patterns yields a comparison of real space information through maps of the silicon-silicon pair correlation function and the electron-positron autocorrelation function B2 γ( r). From this information, it is possible to identify the dominant structural defect as a vacancy-size dangling bond cluster, around which the network strain is fully relaxed.

  17. The influence of hydrogen contamination on the structural stability of CoSn under compression.

    PubMed

    Mikhaylushkin, A S

    2010-11-01

    The binary CoSn compound has a unique ground state large-void crystal structure, whose stability under pressure has recently been examined. Whereas theoretical results predicted a series of phase transformations, the room temperature experiments did not observe any structural change. We suggest that the large void of a CoSn-type structure could contain natural impurities such as hydrogen, which can influence the thermodynamic stability of a CoSn system and explain the unusual disagreement between the theoretical and experimental results. Based on first-principles calculations we reveal that the contamination of CoSn by hydrogen only results in a subtle change of structural parameters and the equation of state of CoSn, but drastically increases the stability of the CoSn-type phase in comparison with the high-pressure phases predicted earlier. We argue that the hardly detectable natural impurities of light elements in porous compounds like CoSn are able to change the phase equilibria. PMID:21403329

  18. Impact of proton diffusion and the hydrogen photospillover upon the photochromic sensitivity of the WO3 films and the WO3 double-layer structures

    NASA Astrophysics Data System (ADS)

    Gavrilyuk, A. I.

    2013-05-01

    It has been shown that the hydrogen photochromism, i.e., photochromism arising in WO3 films due to hydrogen atoms detached from hydrogen donor molecules under the action of light, is massively impacted by proton diffusion. The control of the diffusion can be established by the combined use of two types of hydrogen-containing molecules; one (organic) playing the role of the hydrogen donor, whereas the other (water) provides pathways for the proton diffusion. The film morphology highly influences formation of the proton conducting water wires in pores of the WO3 films. The spirit is that the hydrogen photospillover is used here: the hydrogen atoms detached from the hydrogen donor molecules adsorbed on the surface of the highly disordered WO3 films flow to the polycrystalline WO3 films along the special water pathways that are formed in the highly disordered films. The hydrogen spillover triggered by light makes it possible to create the photochromic systems with enhanced photochromic sensitivity and special optical characteristics of the photochromic state.

  19. Hydrogen diffusion kinetics and structural integrity of superhigh pressure Mg-5 wt%Ni alloys with dendrite interface

    NASA Astrophysics Data System (ADS)

    Fu, Hui; Wu, Wenshi; Dou, Yang; Liu, Baozhong; Li, Hanning; Peng, Qiuming

    2016-07-01

    A strategy of low-angle orientation dendrite interface-high index planes-which prepared by super-high pressure (SHP) technique, is proposed and successfully improved the hydrogen storage properties of Mg based materials for the first time, wherein a simple binary Mg-Ni alloy is used as a sample to elucidate its related mechanisms. The phase composition, morphology variation and hydrogen storage properties of the as-cast and SHP Mg-5Ni alloys in the temperature range of 1100-1600 °C are systemically investigated. The reversible hydrogen storage capacities and plateau hydrogen pressure of the as-cast and SHP alloys are close due to the same hydrogen storage phases (Mg and Mg2Ni). Note that although SHP treatment at 1600 °C has a large weight fraction of Mg6Ni compound, it still effectively reduces the onset temperature of dehydriding (∼262 °C), as well as improves the hydrogen desorption kinetics at low temperatures and structural integrity. The low onset temperature and outstanding hydrogen sorption/desorption kinetics are mainly associated with the formation of a large number of dendrite interface, in which the hydrogen atoms readily occur "zig-zag" jumps along {11-20} prismatic planes. This dendrite interface of high index planes which prepared by SHP technique paves a new pathway to enhance the hydrogen storage performances of magnesium based alloys.

  20. New hydrogen-bond potentials for use in determining energetically favorable binding sites on molecules of known structure.

    PubMed

    Boobbyer, D N; Goodford, P J; McWhinnie, P M; Wade, R C

    1989-05-01

    An empirical energy function designed to calculate the interaction energy of a chemical probe group, such as a carbonyl oxygen or an amine nitrogen atom, with a target molecule has been developed. This function is used to determine the sites where ligands, such as drugs, may bind to a chosen target molecule which may be a protein, a nucleic acid, a polysaccharide, or a small organic molecule. The energy function is composed of a Lennard-Jones, an electrostatic and a hydrogen-bonding term. The latter is dependent on the length and orientation of the hydrogen bond and also on the chemical nature of the hydrogen-bonding atoms. These terms have been formulated by fitting to experimental observations of hydrogen bonds in crystal structures. In the calculations, thermal motion of the hydrogen-bonding hydrogen atoms and lone-pair electrons may be taken into account. For example, in a alcoholic hydroxyl group, the hydrogen may rotate around the C-O bond at the observed tetrahedral angle. In a histidine residue, a hydrogen atom may be bonded to either of the two imidazole nitrogens and movement of this hydrogen will cause a redistribution of charge which is dependent on the nature of the probe group and the surrounding environment. The shape of some of the energy functions is demonstrated on molecules of pharmacological interest. PMID:2709375

  1. The formation and structure of the oxide and hydroxide chemisorbed phases at the aluminum surface, and relevance to hydrogen embrittlement

    NASA Astrophysics Data System (ADS)

    Francis, Michael; Kelly, Robert; Neurock, Matthew

    2010-03-01

    Aluminum alloys used in aerospace structures are susceptible to environmentally assisted cracking (EAC) induced by hydrogen embrittlement (HE) (Gangloff and Ives 1990). Crack growth experiments have demonstrated a linear relation between the relative humidity of the environment and crack growth rates, indicating the importance of water (Speidel and Hyatt 1972). While the presence of water has been demonstrated to be necessary for EAC of aluminum, crack growth rates have been linked to the diffusivity of hydrogen in aluminum (Gangloff 2003) and hydrogen densities at the crack tip as high as Al2H have been observed (Young and Scully 1998). While the mechanism by which hydrogen embrittles aluminum is yet not well understood, without the entry of hydrogen into the aluminum matrix, embrittlement would not occur. While at the crack tip high hydrogen concentrations exist, the solubility of hydrogen in aluminum is normal near 1 ppm (Wolverton 2004). In this work combined first principles and kinetic Monte Carlo methods will be used to examine the oxide and hydroxide structure resulting from exposure of aluminum to H2O or O2 and relevance to hydrogen entry as well as EAC is discussed.

  2. Modeling of the Tritium Impact on Mechanical Properties of Structural Materials by Radiogenic Helium and Hydrogen Synergetic Effect Technique

    SciTech Connect

    Boitsov, I.E.; Grishechkin, S.K.; Zlatoustovskiy, S.V.; Yukhimchuk, A.A.

    2005-07-15

    The paper presents results of tritium-structural materials interaction modeling by simultaneous exposure to radiogenic helium-3 and hydrogen (both dissolved and external). This method of synergetic effect of radiogenic helium-3 and hydrogen is a radiation-safe technique to study the tritium impact on mechanical properties of structural materials. Applicability of the method is illustrated by technique and research results on the impact of high-pressure hydrogen (80MPa), helium-3 (concentration {approx}140appm) and their synergetic (hydrogen+{sup 3}He) effects on mechanical properties of CrNi40MoCuTiAl alloy in temperature range from 20 to 600 deg. C. It has been shown that joint effect of radiogenic helium-3 and hydrogen on mechanical properties of alloy can not be represented as the result of a simple summation of helium and hydrogen embrittlement. Proposed technique of synergetic impact of radiogenic helium-3 and hydrogen allows more correct simulation and investigation in the tritium impact on mechanical properties of materials than individual research in helium or hydrogen embrittlement.

  3. Control of acid gases using a fluidized bed adsorber.

    PubMed

    Chiang, Bo-Chin; Wey, Ming-Yen; Yeh, Chia-Lin

    2003-08-01

    During incineration, secondary pollutants such as acid gases, organic compounds, heavy metals and particulates are generated. Among these pollutants, the acid gases, including sulfur oxides (SO(x)) and hydrogen chloride (HCl), can cause corrosion of the incinerator piping and can generate acid rain after being emitted to the atmosphere. To address this problem, the present study used a novel combination of air pollution control devices (APCDs), composed of a fluidized bed adsorber integrated with a fabric filter. The major objective of the work is to demonstrate the performance of a fluidized bed adsorber for removal of acid gases from flue gas of an incinerator. The adsorbents added in the fluidized bed adsorber were mainly granular activated carbon (AC; with or without chemical treatment) and with calcium oxide used as an additive. The advantages of a fluidized bed reactor for high mass transfer and high gas-solid contact can enhance the removal of acid gases when using a dry method. On the other hand, because the fluidized bed can filter particles, fine particles prior to and after passing through the fluidized bed adsorber were investigated. The competing adsorption on activated carbon between different characteristics of pollutants was also given preliminary discussion. The results indicate that the removal efficiencies of the investigated acid gases, SO(2) and HCl, are higher than 94 and 87%, respectively. Thus, a fluidized bed adsorber integrated with a fabric filter has the potential to replace conventional APCDs, even when there are other pollutants at the same time. PMID:12935758

  4. Adsorbed Water Illustration

    NASA Technical Reports Server (NTRS)

    2008-01-01

    The Thermal and Electrical Conductivity Probe on NASA's Phoenix Mars Lander detected small and variable amounts of water in the Martian soil.

    In this schematic illustration, water molecules are represented in red and white; soil minerals are represented in green and blue. The water, neither liquid, vapor, nor solid, adheres in very thin films of molecules to the surfaces of soil minerals. The left half illustrates an interpretation of less water being adsorbed onto the soil-particle surface during a period when the tilt, or obliquity, of Mars' rotation axis is small, as it is in the present. The right half illustrates a thicker film of water during a time when the obliquity is greater, as it is during cycles on time scales of hundreds of thousands of years. As the humidity of the atmosphere increases, more water accumulates on mineral surfaces. Thicker films behave increasingly like liquid water.

    The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  5. SISGR - Hydrogen Caged in Carbon-Exploration of Novel Carbon-Hydrogen Interactions

    SciTech Connect

    Lueking, Angela; Badding, John; Crespi, Vinent

    2015-12-01

    Hydrogen trapped in a carbon cage, captured through repulsive interactions, is a novel concept in hydrogen storage. Trapping hydrogen via repulsive interactions borrows an idea from macroscale hydrogen storage (i.e. compressed gas storage tanks) and reapplies these concepts on the nanoscale in specially designed molecular containers. Under extreme conditions of pressure, hydrogen solubility in carbon materials is expected to increase and carbon is expected to restructure to minimize volume via a mixed sp2/sp3 hydrogenated state. Thermodynamics dictate that pre-formed C-H structures will rearrange with increased pressure, yet the final carbon-hydrogen interactions may be dependent upon the mechanism by which hydrogen is introduced. Gas “trapping” is meant to denote gas present in a solid in a high density, adsorbed-like state, when the external pressure is much less than that necessary to provide a comparable fluid density. Trapping thus denotes a kinetically metastable state rather than thermodynamic equilibrium. This project probed mechanochemical means to polymerize select hydrocarbons in the presence of gases, in an attempt to form localized carbon cages that trap gases via repulsive interactions. Aromatic, polyaromatic, and hydroaromatic molecules expected to undergo cyclo-addition reactions were polymerized at high (~GPa) pressures to form extended hydrogenated amorphous carbon networks. Notably, aromatics with a pre-existing internal free volume (such as Triptycene) appeared to retain an internal porosity upon application of pressure. However, a high photoluminescence background after polymerization precluded in situ identification of trapped gases. No spectroscopic evidence was found after depressurization that would be indicative of pockets of trapped gases in a localized high-pressure environment. Control studies suggested this measurement may be insensitive to gases at low pressure. Similarly, no spectral fingerprint was found for gas-imbued spherical

  6. Hydrogen Adsorption in Zeolite Studied with Sievert and Thermogravimetric Methods

    NASA Astrophysics Data System (ADS)

    Lesnicenoks, P.; Sivars, A.; Grinberga, L.; Kleperis, J.

    2012-08-01

    Natural clinoptilolite (mixture from clinoptilolite, quartz and muscovite) is activated with palladium and tested for hydrogen adsorption capability at temperatures RT - 200°C. Thermogravimetric and volumetric methods showed that zeolite activated with palladium (1.25%wt) shows markedly high hydrogen adsorption capacity - up to 3 wt%. Lower amount of adsorbed hydrogen (~1.5 wt%) was found for raw zeolite and activated with higher amount of palladium sample. Hypothesis is proposed that the heating of zeolite in argon atmosphere forms and activates the pore structure in zeolite material, where hydrogen encapsulation (trapping) is believed to occur when cooling down to room temperature. An effect of catalyst (Pd) on hydrogen sorption capability is explained by spillover phenomena were less-porous fractions of natural clinoptilolite sample (quartz and muscovite) are involved.

  7. Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite.

    PubMed

    Moran, Robert F; McKay, David; Pickard, Chris J; Berry, Andrew J; Griffin, John M; Ashbrook, Sharon E

    2016-04-21

    The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg2SiO4 with 1.6 wt% H2O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg(2+) and randomly placing two H(+) in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1-H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4-H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies. PMID:27020937

  8. Computer simulations of adsorbed liquid crystal films

    NASA Astrophysics Data System (ADS)

    Wall, Greg D.; Cleaver, Douglas J.

    2003-01-01

    The structures adopted by adsorbed thin films of Gay-Berne particles in the presence of a coexisting vapour phase are investigated by molecular dynamics simulation. The films are adsorbed at a flat substrate which favours planar anchoring, whereas the nematic-vapour interface favours normal alignment. On cooling, a system with a high molecule-substrate interaction strength exhibits substrate-induced planar orientational ordering and considerable stratification is observed in the density profiles. In contrast, a system with weak molecule-substrate coupling adopts a director orientation orthogonal to the substrate plane, owing to the increased influence of the nematic-vapour interface. There are significant differences between the structures adopted at the two interfaces, in contrast with the predictions of density functional treatments of such systems.

  9. Structure Evolution and Hydrogenation Performance of IrFe Bimetallic Nanomaterials.

    PubMed

    Lu, Ting; Lin, Jian; Liu, Xin; Wang, Xiaodong; Zhang, Tao

    2016-03-22

    By a reverse microemulsion method, a series of IrFe bimetallic nanomaterials of variable morphologies and compositions is synthesized and characterized by (57)Fe Mössbauer spectroscopy, XRD, XPS, and TEM. The structure evolution, such as IrFe alloy nanoparticles to Ir nanoparticles on Fe2O3 flakes, can be simply tuned by changing the molar ratio of Ir to Fe precursors. In terms of Fe, the relative content of IrFe alloy decreased with the increase of Fe species doped, while that of Fe2O3 flakes increased until reached 100%. The as-prepared IrFe bimetallic nanomaterials were served as catalysts for the selective hydrogenation of 3-nitrostyrene to 3-aminostyrene, and it is found that the catalytic performance was related to the morphology and composition of these nanomaterials. Ir1Fe4 was subsequently identified to be a highly active and exceedingly selective catalyst with good stability and recyclability for the hydrogenation of 3-nitrostyrene, underscoring a remarkable "synergistic effect" of the two metals appearing as the form of Ir nanoparticles loaded on Fe2O3 flakes. For Ir nanoparticles, they act as an active species for the hydrogenation; for Fe2O3 flakes, they favor the preferential adsorption of nitro groups, which account for the better chemoselectivity to objective product. PMID:26940131

  10. Pressure-induced chemistry in a nitrogen-hydrogen host-guest structure.

    PubMed

    Spaulding, Dylan K; Weck, Gunnar; Loubeyre, Paul; Datchi, Fréderic; Dumas, Paul; Hanfland, Michael

    2014-01-01

    New topochemistry in simple molecular systems can be explored at high pressure. Here we examine the binary nitrogen/hydrogen system using Raman spectroscopy, synchrotron X-ray diffraction, synchrotron infrared microspectroscopy and visual observation. We find a eutectic-type binary phase diagram with two stable high-pressure van der Waals compounds, which we identify as (N2)6(H2)7 and N2(H2)2. The former represents a new type of van der Waals host-guest compound in which hydrogen molecules are contained within channels in a nitrogen lattice. This compound shows evidence for a gradual, pressure-induced change in bonding from van der Waals to ionic interactions near 50 GPa, forming an amorphous dinitrogen network containing ionized ammonia in a room-temperature analogue of the Haber-Bosch process. Hydrazine is recovered on decompression. The nitrogen-hydrogen system demonstrates the potential for new pressure-driven chemistry in high-pressure structures and the promise of tailoring molecular interactions for materials synthesis. PMID:25484135

  11. Pressure-induced chemistry in a nitrogen-hydrogen host-guest structure

    NASA Astrophysics Data System (ADS)

    Spaulding, Dylan K.; Weck, Gunnar; Loubeyre, Paul; Datchi, Fréderic; Dumas, Paul; Hanfland, Michael

    2014-12-01

    New topochemistry in simple molecular systems can be explored at high pressure. Here we examine the binary nitrogen/hydrogen system using Raman spectroscopy, synchrotron X-ray diffraction, synchrotron infrared microspectroscopy and visual observation. We find a eutectic-type binary phase diagram with two stable high-pressure van der Waals compounds, which we identify as (N2)6(H2)7 and N2(H2)2. The former represents a new type of van der Waals host-guest compound in which hydrogen molecules are contained within channels in a nitrogen lattice. This compound shows evidence for a gradual, pressure-induced change in bonding from van der Waals to ionic interactions near 50 GPa, forming an amorphous dinitrogen network containing ionized ammonia in a room-temperature analogue of the Haber-Bosch process. Hydrazine is recovered on decompression. The nitrogen-hydrogen system demonstrates the potential for new pressure-driven chemistry in high-pressure structures and the promise of tailoring molecular interactions for materials synthesis.

  12. Theoretical and spectroscopic studies on molecular structure and hydrogen bonding of 2-trifluoroacetylphenol.

    PubMed

    Moosavi-Tekyeh, Zainab; Tayyari, Sayyed Faramarz

    2015-01-25

    The molecular structure, intramolecular hydrogen bonding, and vibrational frequencies of 2-trifluoroacetylphenol (TFAP), were investigated by means of density functional theory (DFT) calculations and NMR, IR, and Raman spectroscopy techniques. The calculated theoretical and observed experimental results were compared with the corresponding data for salicylaldehyde (SA). Calculations were performed at the B3LYP level, using 6-311++G(**) basis set. The observed vibrational frequencies of TFAP were assigned with aid of theoretical calculations. The scaled frequencies at the B3LYP/6-311++G(**) level are in good agreement with the corresponding observed values by acceptable deviations. To investigate the effect of CF3 group on the hydrogen bond strength, the charge distributions, steric effects, and electron delocalization in TFAP and SA are studied using the natural bond orbital (NBO) analysis. The computations were further complemented with an atoms-in-molecules (AIM) topological analysis to characterize the nature of the intramolecular hydrogen bond, IHB, in the considered molecules. The contradiction between experimental and theoretical results was interpreted by considering the opposite effects of steric effect and electron withdrawing nature of CF3 group. PMID:25150433

  13. Structure and screening in molecular and metallic hydrogen at high pressure

    NASA Technical Reports Server (NTRS)

    Wood, D. M.; Ashcroft, N. W.

    1981-01-01

    A variational wavefunction is used to express the (spin restricted) Hartree-Fock energy as reciprocal lattice sums for static lattice FCC monatomic hydrogen and diatomic Pa3 molecular hydrogen. In the monatomic phase the hydrogenic orbital range closely parallels the inverse Thomas-Fermi wavevector; the corresponding energy E has a minimum of -0.929 Ryd/electron at r sub s = 1.67. For the diatomic phase E(r sub s) is similar, but the constituent energies, screening, and bond length reflect a qualitative change in the nature of the solid at r sub s = 2.8. This change is interpreted in terms of a transition from protons as structural units (at high density) to weakly interacting models (at low density). Insensitivity of the total energy to a rapid fall in the bond length suggests association with the rotational transition where the rapid molecular orientations characteristic of high pressures disappear and the molecules rotate freely at low pressure.

  14. Si isotopic structure of the infrared absorption of the fully hydrogenated vacancy in silicon.

    PubMed

    Clerjaud, B; Pajot, B

    2013-05-14

    An infrared absorption spectrum consisting in three lines observed around 2223 cm(-1) at liquid helium temperature characterizes a defect common in silicon crystals containing hydrogen. Several investigations of this spectrum have converged towards its assignment to a fully hydrogenated lattice vacancy defect V(Si-H)4. However, the fact that the ratios of the intensities of the three lines have been reported to be proportional to the natural abundances of the three silicon isotopes suggests that only one Si atom is involved in the defect, apparently contradicting the above assignment. In this paper, the spectroscopic investigation of this defect is revisited and the Si-related isotopic structures of V(Si-H)4 and V(Si-D)4 defects are modeled. It is shown that the near proportionalities observed between the intensities of these lines and the abundances of the Si isotopes are fortuitous. Our analysis of the isotope dependence of the 2223 cm(-1) line finds the V(Si-H)4 model to be correct and that the model of a single interstitial Si atom complexed with H can be rejected. The investigation is extended to the analysis of tetra-hydrogenated vacancy trapped by a carbon atom. PMID:23676054

  15. Molecular dynamics simulations of binary structure H hydrogen and methyl-tert-butylether clathrate hydrates.

    PubMed

    Alavi, Saman; Ripmeester, J A; Klug, D D

    2006-05-28

    Binary structure H (sH) hydrogen and methyl-tert-butylether (MTBE) clathrate hydrates are studied with molecular dynamics simulations. Simulations on a 3 x 3 x 3 sH unit cell with up to 4.7 mass % hydrogen gas are run at pressures of 100 bars and 2 kbars at 100 and 273 K. For the small and medium cages of the sH unit cell, H2 guest molecule occupancies of 0, 1 (single occupancy), and 2 (double occupancy) are considered with the MTBE molecule occupying all of the large cages. An increase of the small and medium cage occupancies from 1 to 2 leads to a jump in the unit cell volume and configurational energy. Calculations are also set up with 13, 23, and 89 of the MTBE molecules in the large cages replaced by sets of three to six H2 molecules, and the effects on the configurational energy and volume of the simulation cell are determined. As MTBE molecules are replaced with sets of H2 guests in the large cages, the configurational energy of the unit cell increases. At the lower temperature, the energy and volume of the clathrate are not sensitive to the number of hydrogen guests in the large cages; however, at higher temperatures the repulsions among the H2 guest molecules in the large cages cause an increase in the system energy and volume. PMID:16774364

  16. Structural Evidence for Inter-Residue Hydrogen Bonding Observed for Cellobiose in Aqueous Solution

    PubMed Central

    O'Dell, William B.; Baker, David C.; McLain, Sylvia E.

    2012-01-01

    The structure of the disaccharide cellulose subunit cellobiose (4-O-β-D-glucopyranosyl-D-glucose) in solution has been determined via neutron diffraction with isotopic substitution (NDIS), computer modeling and nuclear magnetic resonance (NMR) spectroscopic studies. This study shows direct evidence for an intramolecular hydrogen bond between the reducing ring HO3 hydroxyl group and the non-reducing ring oxygen (O5′) that has been previously predicted by computation and NMR analysis. Moreover, this work shows that hydrogen bonding to the non-reducing ring O5′ oxygen is shared between water and the HO3 hydroxyl group with an average of 50% occupancy by each hydrogen-bond donor. The glycosidic torsion angles φH and ψH from the neutron diffraction-based model show a fairly tight distribution of angles around approximately 22° and −40°, respectively, in solution, consistent with the NMR measurements. Similarly, the hydroxymethyl torsional angles for both reducing and non-reducing rings are broadly consistent with the NMR measurements in this study, as well as with those from previous measurements for cellobiose in solution. PMID:23056199

  17. Si isotopic structure of the infrared absorption of the fully hydrogenated vacancy in silicon

    NASA Astrophysics Data System (ADS)

    Clerjaud, B.; Pajot, B.

    2013-05-01

    An infrared absorption spectrum consisting in three lines observed around 2223 cm-1 at liquid helium temperature characterizes a defect common in silicon crystals containing hydrogen. Several investigations of this spectrum have converged towards its assignment to a fully hydrogenated lattice vacancy defect V(Si-H)4. However, the fact that the ratios of the intensities of the three lines have been reported to be proportional to the natural abundances of the three silicon isotopes suggests that only one Si atom is involved in the defect, apparently contradicting the above assignment. In this paper, the spectroscopic investigation of this defect is revisited and the Si-related isotopic structures of V(Si-H)4 and V(Si-D)4 defects are modeled. It is shown that the near proportionalities observed between the intensities of these lines and the abundances of the Si isotopes are fortuitous. Our analysis of the isotope dependence of the 2223 cm-1 line finds the V(Si-H)4 model to be correct and that the model of a single interstitial Si atom complexed with H can be rejected. The investigation is extended to the analysis of tetra-hydrogenated vacancy trapped by a carbon atom.

  18. Effects of hydrogen adsorption on the properties of double wall BN and (BN)xCy nanotubes

    NASA Astrophysics Data System (ADS)

    Freitas, A.; Azevedo, S.; Kaschny, J. R.

    2016-01-01

    In the present contribution, we apply first-principles calculations, based on the density functional theory, to study the effects of hydrogen adsorption on the structural and electronic properties of boron nitride and hybrid carbon-boron nitride double wall nanotubes. The results demonstrate that the hydrogen decoration induces significant structural deformation and an appreciable reduction in the gap energy. When the number of hydrogen atoms introduced on the outer wall is increased, desorption of hydrogen pairs are observed. The calculations indicate that each adsorbed hydrogen atom induces a structural deformation with an energetic cost of about 68 meV/atom. It is also found that the introduction of hydrogen atoms can be applied as an efficient tool for tuning the electronic properties of such structures.

  19. Molecular hydrogen messengers can lead to structural infidelity: A cautionary tale of protonated glycine

    SciTech Connect

    Masson, Antoine Rizzo, Thomas R. E-mail: thomas.rizzo@epfl.ch; Williams, Evan R. E-mail: thomas.rizzo@epfl.ch

    2015-09-14

    The effects of tagging protonated glycine with either He or between 1 and 14 H{sub 2} molecules on the infrared photodissociation spectra and the ion structure were investigated. Differences in the IR spectra with either a single He atom or H{sub 2} molecule attached indicate that even a single H{sub 2} molecule can affect the frequencies of some vibrational bands of this simple ion. The protonation site is the preferred location of the tag with He and with up to two H{sub 2} molecules, but evidence for H{sub 2} attachment to the hydrogen atom of the uncharged carboxylic acid is observed for ions tagged with three or more H{sub 2} molecules. This results in a 55 cm{sup −1} red shift in the carboxylic acid OH stretch, and evidence for some structural isomers where the hydrogen bond between the protonated nitrogen and the carbonyl oxygen is partially broken; as a result H{sub 2} molecules attached to this site are observed. These results are supported by theory, which indicates that H{sub 2} molecules can effectively break this weak hydrogen bond with three or more H{sub 2} molecules. These results indicate that large spectral shifts as a result of H{sub 2} molecules attaching to sites remote from the charge can occur and affect stretching frequencies as a result of charge transfer, and that tagging with multiple H{sub 2} molecules can change the structure of the ion itself.

  20. Hydrogen Passivation of N(+)P and P(+)N Heteroepitaxial InP Solar Cell Structures

    NASA Technical Reports Server (NTRS)

    Chatterjee, B.; Davis, W. C.; Ringel, S. A.; Hoffman, R., Jr.

    1995-01-01

    Dislocations and related point defect complexes caused by lattice mismatch currently limit the performance of heteroepitaxial InP cells by introducing shunting paths across the active junction and by the formation of deep traps within the base region. We have previously demonstrated that plasma hydrogenation is an effective and stable means to passivate the electrical activity of such defects in specially designed heteroepitaxial InP test structures to probe hydrogen passivation at typical base depths within a cell structure. In this work, we present our results on the hydrogen passivation of actual heteroepitaxial n(+)p and p(+)n InP cell structures grown on GaAs substrates by metalorganic chemical vapor deposition (MOCVD). We have found that a 2 hour exposure to a 13.56 MHz hydrogen plasma at 275 C reduces the deep level concentration in the base regions of both n(+)p and p(+)n heteroepitaxial InP cell structures from as-grown values of 5 - 7 x 10(exp 14)/cc, down to 3 - 5 x 10(exp 12)/cc. All dopants were successfully reactivated by a 400 C, 5 minute anneal With no detectable activation of deep levels. I-V analysis indicated a subsequent approx. 100 fold decrease In reverse leakage current at -1 volt reverse bias, and an improved built in voltage for the p(+)n structures. ln addition to being passivated,dislocations are also shown to participate in secondary interactions during hydrogenation. We find that the presence of dislocations enhances hydrogen diffusion into the cell structure, and lowers the apparent dissociation energy of Zn-H complexes from 1.19 eV for homoepitaxial Zn-doped InP to 1.12 eV for heteroepitaxial Zn-doped InP. This is explained by additional hydrogen trapping at dislocations subsequent to the reactivation of Zn dopants after hydrogenation.

  1. Hydrogen passivation of N(+)-P and P(+)-N heteroepitaxial InP solar cell structures

    NASA Technical Reports Server (NTRS)

    Chatterjee, Basab; Davis, William C.; Ringel, Steve A.; Hoffman, Richard, Jr.

    1996-01-01

    Dislocations and related point defect complexes caused by lattice mismatch currently limit the performance of heteroepitaxial InP cells by introducing shunting paths across the active junction and by the formation of deep traps within the base region. We have previously demonstrated that plasma hydrogenation is an effective and stable means to passivate the electrical activity of such defects in specially designed heteroepitaxial InP test structures to probe hydrogen passivation at typical base depths within a cell structure. In this work, we present our results on the hydrogen passivation of actual heteroepitaxial n-p and p-n InP cell structures grown on GaAs substrates by metalorganic chemical vapor deposition (MOCVD). We have found that a 2 hour exposure to a 13.56 MHz hydrogen plasma at 275 C reduces the deep level concentration in the base regions of both n(+)-p and p(+)-n heteroepitaxial InP cell structures from as-grown values of 5-7 x 10(exp 14) cm(exp -3), down to 3-5 x 10(exp 12) cm(exp -3). All dopants were successfully reactivated by a 400 C, 5 minute anneal with no detectable activation of deep levels. One to five analysis indicated a subsequent approximately 100 fold decrease in reverse leakage current at -1 volt reverse bias, and an improved built in voltage for the p(+)-n structures. In addition to being passivated, dislocations are also shown to participate in secondary interactions during hydrogenation. We find that the presence of dislocations enhances hydrogen diffusion into the cell structure, and lowers the apparent dissociation energy of Zn-H complexes from 1.19 eV for homoepitaxial Zn-doped InP to 1.12 eV for heteroepitaxial Zn-doped InP. This is explained by additional hydrogen trapping at dislocations subsequent to the reactivation of Zn dopants after hydrogenation.

  2. Hydrogen atoms under magnification: direct observation of the nodal structure of Stark states.

    PubMed

    Stodolna, A S; Rouzée, A; Lépine, F; Cohen, S; Robicheaux, F; Gijsbertsen, A; Jungmann, J H; Bordas, C; Vrakking, M J J

    2013-05-24

    To describe the microscopic properties of matter, quantum mechanics uses wave functions, whose structure and time dependence is governed by the Schrödinger equation. In atoms the charge distributions described by the wave function are rarely observed. The hydrogen atom is unique, since it only has one electron and, in a dc electric field, the Stark Hamiltonian is exactly separable in terms of parabolic coordinates (η, ξ, φ). As a result, the microscopic wave function along the ξ coordinate that exists in the vicinity of the atom, and the projection of the continuum wave function measured at a macroscopic distance, share the same nodal structure. In this Letter, we report photoionization microscopy experiments where this nodal structure is directly observed. The experiments provide a validation of theoretical predictions that have been made over the last three decades. PMID:23745864

  3. A model for structural response to hydrogen combustion loads in severe accidents

    SciTech Connect

    Breitung, W.; Redlinger, R.

    1995-09-01

    The response of structures to different pressure histories from hydrogen combustion is analyzed using the model of a linear undamped oscillator. The effective static pressures from a slow deflagration-to-detonation transition (DDT) and a stable detonation are calculated as functions of oscillator frequency. The response of components with a low natural frequency, such as the outermost shell in a large dry containment, is governed by the long-term pressure after combustion. Detonation peak pressure and impulse are not important. For structures with low frequencies, fast flames have a damage potential very similar to detonations. For the investigated pressure loads, the normally reflected detonation provides the bounding effective static pressure for oscillators up to 500 Hz. Fully confined DDT events can exceed the detonation load near the transition location for structural frequencies about {approximately}40 Hz.

  4. Structure-forming units of amino acid maleates. Case study of L-valinium hydrogen maleate.

    PubMed

    Rychkov, Denis; Arkhipov, Sergey; Boldyreva, Elena

    2016-02-01

    A new salt of L-valinium hydrogen maleate was used as an example to study structure-forming units in amino acid maleates. This compound was crystallized, its structure solved from single-crystal X-ray diffraction data, and the phase purity of the bulk powder sample confirmed by X-ray powder diffraction and FT-IR spectra. The stability of the new salt was analyzed using density functional theory and PIXEL calculations with focus on the C(2)2(12) structure-forming crystallographic motif. This motif was of particular interest as it is common for almost all maleates. The exceptionally high ability of maleic acid to form salts with various amino acids was rationalized. PMID:26830808

  5. Size Dependence of Atomically Precise Gold Nanoclusters in Chemoselective Hydrogenation and Active Site Structure

    SciTech Connect

    Li, Gao; Jiang, Deen; Kumar, Santosh; Chen, Yuxiang; Jin, Rongchao

    2014-01-01

    We here investigate the catalytic properties of water-soluble Aun(SG)m nanocluster catalysts (H-SG = glutathione) of different sizes, including Au15(SG)13, Au18(SG)14, Au25(SG)18, Au38(SG)24, and captopril-capped Au25(Capt)18 nanoclusters. These Aun(SR)m nanoclusters (-SR represents thiolate generally) are used as homogeneous catalysts (i.e., without supports) in the chemoselective hydrogenation of 4-nitrobenzaldehyde (4-NO2PhCHO) to 4-nitrobenzyl alcohol (4-NO2PhCH2OH) in water with H2 gas (20 bar) as the hydrogen source. These nanocluster catalysts, except Au18(SG)14, remain intact after the catalytic reaction, evidenced by UV-vis spectra which are characteristic of each sized nanoclusters and thus serve as spectroscopic fingerprints . We observe a drastic size-dependence and steric effect of protecting ligands on the gold nanocluster catalysts in the hydrogenation reaction. Density functional theory (DFT) modeling of the 4-nitrobenzaldehyde adsorption shows that both the CHO and NO2 groups are in close interact with the S-Au-S staples on the gold nanocluster surface; the adsorption of the 4-nitrobenzaldehyde molecule on the four different sized Aun(SR)m nanoclusters are moderately strong and similar in strength. The DFT results suggest that the catalytic activity of the Aun(SR)m nanoclusters is primarily determined by the surface area of the Au nanocluster, consistent with the observed trend of the conversion of 4-nitrobenzaldehyde versus the cluster size. Overall, this work offers the molecular insight into the hydrogenation of 4-nitrobenzaldehyde and the catalytically active site structure on gold nanocluster catalysts.

  6. Hydrogen from Water over Openly-Structured Graphitic Carbon Nitride Polymer through Photocatalysis.

    PubMed

    Huang, Zhijun; Li, Fengbo; Chen, Bingfeng; Yuan, Guoqing

    2016-03-01

    Openly-structured g-C3 N4 microspheres (CNMS) are developed through a well-controlled strategy. These materials have unique features of open 3 D structure, ordered hierarchical porosity, and improved optical and electronic properties. Hydrogen evolution from water is performed under a 300 W Xe lamp with a cut-off filter (λ>420 nm) and Pt nanoparticles are used as the co-catalyst (3.0 wt%). The catalyst prepared at 600 °C (CNMS-600) has a hydrogen evolution rate (HER) of 392 μmol h(-1) (apparent quantum yield, AQY=6.3%) at 420 nm. This value is higher than that of g-C3 N4 nanosheets prepared through thermal oxidation, liquid exfoliation, or chemical exfoliation. The HER value is only 27 μmol h(-1) (AQY=0.43%) at 420 nm for bulk g-C3 N4 from melamine. The evolution of openly-structured CNMS was investigated by TEM, FTIR, and XRD. The improved optical and electronic properties were demonstrated through UV/Vis absorption spectra, valence-band X-ray photoelectron spectroscopy, photoluminescence spectroscopy, electron paramagnetic resonance spectroscopy, and electrochemical impedance spectroscopy. PMID:26834034

  7. Structural, functional and chemical changes in Pseudozyma antarctica lipase B on exposure to hydrogen peroxide.

    PubMed

    Törnvall, Ulrika; Hedström, Martin; Schillén, Karin; Hatti-Kaul, Rajni

    2010-12-01

    The effect on primary, secondary, tertiary and quaternary structure of Pseudozyma (formerly Candida) antarctica lipase B (PalB) on exposure to hydrogen peroxide was investigated using nano-electrospray ionization-mass spectrometry (nano-ESI-MS), liquid chromatography tandem mass spectrometry (LC/MS/MS), circular dichroism (CD), and dynamic light scattering (DLS). Treatment with hydrogen peroxide generated heavier protein variants, with a mass gain that increased with increasing incubation time. Furthermore, elevated concentration of H(2)O(2) was shown to result in partial fragmentation of the protein. Proteolytic digestion of the enzyme gave primary sequence coverage of more than 90%, revealing oxidation of methionine, tryptophan and cystine residues. The active site histidine was not observed in oxidized form in any of the experiments. However, oxidation of cystine to cysteic acid indicated disruption of disulphide bridges, and CD evaluations confirmed that severe changes to the secondary structure towards random coil had occurred. The structural changes could be an effect of the observed amino acid side chain oxidations, and was correlated with deactivation of the lipase. From DLS experiments, it was seen that the lipase exposed to both high temperature and H(2)O(2) formed large and intermediate sized aggregates, not observed for the heat-treated enzyme. The findings reported here could lay the basis for developing enzyme variants with higher oxidative stability. PMID:20654682

  8. Hydrogen versus fluorine: effects on molecular structure and intermolecular interactions in a platinum isocyanate complex.

    PubMed

    Raven, William; Joschko, Thomas; Kalf, Irmgard; Englert, Ulli

    2016-03-01

    At the molecular level, the enantiomerically pure square-planar organoplatinum complex (SP-4-4)-(R)-[2-(1-aminoethyl)-5-fluorophenyl-κ(2)C(1),N][(R)-1-(4-fluorophenyl)ethylamine-κN](isocyanato-κN)platinum(II), [Pt(C8H9FN)(NCO)(C8H10FN)], and its congener without fluorine substituents on the aryl rings adopt the same structure within error. The similarities between the compounds extend to the most relevant intermolecular interactions, i.e. N-H...O and N-H...N hydrogen bonds link neighbouring molecules into chains along the shortest lattice parameter in each structure. Differences between the crystal structures of the fluoro-substituted and parent complex become obvious with respect to secondary interactions perpendicular to the classical hydrogen bonds; the fluorinated compound features short C-H...F contacts with an F...H distance of ca 2.6 Å. The fluorine substitution is also reflected in reduced backbonding from the metal cation to the isocyanate ligand. PMID:26942427

  9. Turbulence effects on cellular burning structures in lean premixed hydrogen flames

    SciTech Connect

    Day, Marc; Bell, John; Beckner, Vince; Lijewski, Michael; Bremer, Peer-Timo; Pascucci, Valerio

    2009-05-15

    We present numerical simulations of lean hydrogen flames interacting with turbulence. The simulations are performed in an idealized setting using an adaptive low Mach number model with a numerical feedback control algorithm to stabilize the flame. At the conditions considered here, hydrogen flames are thermodiffusively unstable, and burn in cellular structures. For that reason, we consider two levels of turbulence intensity and a case without turbulence whose dynamics is driven by the natural flame instability. An overview of the flame structure shows that the burning in the cellular structures is quite intense, with the burning patches separated by regions in which the flame is effectively extinguished. We explore the geometry of the flame surface in detail, quantifying the mean and Gaussian curvature distributions and the distribution of the cell sizes. We next characterize the local flame speed to quantify the effect of flame intensification on local propagation speed. We then introduce several diagnostics aimed at quantifying both the level of intensification and diffusive mechanisms that lead to the intensification. (author)

  10. Solid-state structures and properties of scandium hydride; hydrogen storage and switchable mirrors application

    NASA Astrophysics Data System (ADS)

    Khodja, Khadidja; Bouhadda, Youcef; Seddik, Larbi; Benyelloul, Kamel

    2016-05-01

    First-principles calculation has been performed on the rare earth hydride ScH2 for hydrogen storage and switchable mirror applications, using the pseudo-potentials and plane waves based on the density-functional theory (DFT). The electronic and structural properties are studied within both local-density and generalized gradient approximations for exchange energy. The formation energy and the optical properties have been investigated and discussed. Our calculated results are generally in good agreement with theoretical and experimental data. Contribution to the topical issue "Materials for Energy Harvesting, Conversion and Storage (ICOME 2015) - Elected submissions", edited by Jean-Michel Nunzi, Rachid Bennacer and Mohammed El Ganaoui

  11. Structure and dynamics of hydrogen molecules in the novel clathrate hydrate by high pressure neutron diffraction.

    PubMed

    Lokshin, Konstantin A; Zhao, Yusheng; He, Duanwei; Mao, Wendy L; Mao, Ho-Kwang; Hemley, Russell J; Lobanov, Maxim V; Greenblatt, Martha

    2004-09-17

    The D2 clathrate hydrate crystal structure was determined as a function of temperature and pressure by neutron diffraction for the first time. The hydrogen occupancy in the (32+X)H2.136H(2)O, x=0-16 clathrate can be reversibly varied by changing the large (hexakaidecahedral) cage occupancy between two and four molecules, while remaining single occupancy of the small (dodecahedral) cage. Above 130-160 K, the guest D2 molecules were found in the delocalized state, rotating around the centers of the cages. Decrease of temperature results in rotation freezing followed by a complete localization below 50 K. PMID:15447276

  12. Structure and stability of silicon nanoclusters passivated by hydrogen and oxygen: evolutionary algorithm and first- principles study

    NASA Astrophysics Data System (ADS)

    Baturin, V. S.; Lepeshkin, S. V.; Matsko, N. L.; Uspenskii, Yu A.

    2016-02-01

    We investigate the structural and thermodynamical properties of small silicon clusters. Using the graph theory applied to previously obtained structures of Si10H2m clusters we trace the connection between geometry and passivation degree. The existing data on these clusters and structures of Si10O4n clusters obtained here using evolutionary calculations allowed to analyze the features of Si10H2m clusters in hydrogen atmosphere and Si10O4n clusters in oxygen atmosphere. We have shown the basic differences between structures and thermodynamical properties of silicon clusters, passivated by hydrogen and silicon oxide clusters.

  13. Structural changes of hydrogenated amorphous carbon films deposited on steel rods

    NASA Astrophysics Data System (ADS)

    Choi, Junho; Hatta, Tetsuya

    2015-12-01

    In this study, hydrogenated amorphous carbon (a-C:H) films were deposited on steel rods of various radii by using bipolar-type plasma based ion implantation and deposition, and the film structure and mechanical properties have been investigated. Furthermore, the behavior of plasma surrounding the steel rods (i.e., flux and energy of incident ions and electrons) was investigated using the particle-in-cell Monte Carlo collision (PIC-MCC) method to examine the mechanism behind the structural changes of the a-C:H films. Three kinds of amorphous carbon films with different microstructures were prepared by changing the negative pulse voltages from -1 kV to -5 kV: one polymer-like carbon film and two diamond-like carbon films that possess the maximum FWHM(G) (full width at half maximum of Raman G-peak) and maximum hardness. The structure of the a-C:H films was evaluated through Raman spectroscopy, and the hardness of the films was measured using nanoindentation. It was found that the structures of a-C:H films deposited on the steel-rod surfaces are quite different from those on flat surfaces, and the film structures are directly affected by the curvature of the rod. It was also determined from the plasma simulation that the incident electron flux and ion flux become more intense as the curvature increases, resulting in the structural changes of the a-C:H films due to hydrogen evolution and thermal relaxation in the films.

  14. Preparation of core-shell structure Fe3 O4 @SiO2 superparamagnetic microspheres immoblized with iminodiacetic acid as immobilized metal ion affinity adsorbents for His-tag protein purification.

    PubMed

    Ni, Qian; Chen, Bing; Dong, Shaohua; Tian, Lei; Bai, Quan

    2016-04-01

    The core-shell structure Fe3 O4 /SiO2 magnetic microspheres were prepared by a sol-gel method, and immobiled with iminodiacetic acid (IDA) as metal ion affinity ligands for protein adsorption. The size, morphology, magnetic properties and surface modification of magnetic silica nanospheres were characterized by various modern analytical instruments. It was shown that the magnetic silica nanospheres exhibited superparamagnetism with saturation magnetization values of up to 58.1 emu/g. Three divalent metal ions, Cu(2+) , Ni(2+) and Zn(2+) , were chelated on the Fe3 O4 @SiO2 -IDA magnetic microspheres to adsorb lysozyme. The results indicated that Ni(2+) -chelating magnetic microspheres had the maximum adsorption capacity for lysozyme of 51.0 mg/g, adsorption equilibrium could be achieved within 60 min and the adsorbed protein could be easily eluted. Furthermore, the synthesized Fe3 O4 @SiO2 -IDA-Ni(2+) magnetic microspheres were successfully applied for selective enrichment lysozyme from egg white and His-tag recombinant Homer 1a from the inclusion extraction expressed in Escherichia coli. The result indicated that the magnetic microspheres showed unique characteristics of high selective separation behavior of protein mixture, low nonspecific adsorption, and easy handling. This demonstrates that the magnetic silica microspheres can be used efficiently in protein separation or purification and show great potential in the pretreatment of the biological sample. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26268650

  15. Novel adhesive properties of poly(ethylene-oxide) adsorbed nanolayers

    NASA Astrophysics Data System (ADS)

    Zeng, Wenduo

    Solid-polymer interfaces play crucial roles in the multidisciplinary field of nanotechnology and are the confluence of physics, chemistry, biology, and engineering. There is now growing evidence that polymer chains irreversibly adsorb even onto weakly attractive solid surfaces, forming a nanometer-thick adsorbed polymer layer ("adsorbed polymer nanolayers"). It has also been reported that the adsorbed layers greatly impact on local structures and properties of supported polymer thin films. In this thesis, I aim to clarify adhesive and tribological properties of adsorbed poly(ethylene-oxide) (PEO) nanolayers onto silicon (Si) substrates, which remain unsolved so far. The adsorbed nanolayers were prepared by the established protocol: one has to equilibrate the melt or dense solution against a solid surface; the unadsorbed chains can be then removed by a good solvent, while the adsorbed chains are assumed to maintain the same conformation due to the irreversible freezing through many physical solid-segment contacts. I firstly characterized the formation process and the surface/film structures of the adsorbed nanolayers by using X-ray reflectivity, grazing incidence X-ray diffraction, and atomic force microscopy. Secondly, to compare the surface energy of the adsorbed layers with the bulk, static contact angle measurements with two liquids (water and glycerol) were carried out using a optical contact angle meter equipped with a video camera. Thirdly, I designed and constructed a custom-built adhesion-testing device to quantify the adhesive property. The experimental results provide new insight into the microscopic structure - macroscopic property relationship at the solid-polymer interface.

  16. Dynamic Structural Changes in a Molecular Zeolite-Supported Iridium Catalyst for Ethene Hydrogenation

    SciTech Connect

    Uzun, Alper; Gates, Bruce C.

    2009-11-16

    The structure of a catalyst often changes as a result of changes in the reactive environment during operation. Examples include changes in bulk phases, extended surface structures, and nanoparticle morphologies; now we report real-time characterization of changes in the structure of a working supported catalyst at the molecular level. Time-resolved extended X-ray absorption fine structure (EXAFS) data demonstrate the reversible interconversion of mononuclear iridium complexes and tetrairidium clusters inside zeolite Y cages, with the structure controlled by the C{sub 2}H{sub 4}/H{sub 2} ratio during ethene hydrogenation at 353 K. The data demonstrate break-up of tetrairidium clusters into mononuclear complexes indicated by a decrease in the Ir-Ir coordination number in ethene-rich feed. When the feed composition was switched to first equimolar and then to a H{sub 2}-rich (C{sub 2}H{sub 4}/H{sub 2} = 0.3) feed, the EXAFS spectra show the reformation of tetrairidium clusters as the Ir-Ir coordination number increased again. When the feed composition was cycled from ethene-rich to H{sub 2}-rich, the predominant species in the catalyst cycled accordingly. Evidence confirming the structural change is provided by IR spectra of iridium carbonyls formed by probing of the catalyst with CO. The data are the first showing how to tune the structure of a solid catalyst at the molecular scale by choice of the reactant composition.

  17. General Motors: Final Report for Hydrogen Storage Engineering Center of Excellence

    SciTech Connect

    Cai, Mei; Chakraborty, Amlan; Hou, Peter; Kaisare, Niklet; Jorgensen, Scott; Kumar, Sudarshan; Li, Changpeng; Ortmann, Jerome; Raju, M.; Vadivelu, S. Kumar

    2015-06-30

    As part of the HSECoE team, the GM team built system models and detailed transport models for on-board hydrogen storage systems using metal hydrides and adsorbent materials. Detailed transport models have been developed for both the metal hydride and adsorbent systems with a focus on optimization of heat exchanger designs with the objective of minimizing the heat exchanger mass. We also performed work in collaboration with our partners on storage media structuring and enhancement studies for the metal hydride and adsorbent materials. Since the hydrogen storage materials are generally characterized by low density and low thermal conductivity, we conducted experiments to form pellets and add thermal conductivity enhancers to the storage material, and to improve cycling stability and durability of the metal hydride and adsorbent materials. Refueling of a MOF-5 pellet with cryogenic hydrogen was studied by developing a detailed two-dimensional axisymmetric COMSOL® model of the process. The effects of pellet permeability, thermal conductivity, and thermal conductivity enhancers were investigated. Our key area of focus has been on designing and building a cryo-adsorption vessel for validation of cryo-adsorption models. The 3-L cryogenic tank was used to study the fast fill and discharge dynamics of a cryo-adsorbent storage system, both experimentally and numerically.

  18. Structural description of acid-denatured cytochrome c by hydrogen exchange and 2D NMR

    SciTech Connect

    Jeng, Meifen; Englander, S.W.; Elove, G.A.; Wand, A.J.; Roder, H. )

    1990-11-01

    Hydrogen exchange and two-dimensional nuclear magnetic resonance (2D NMR) techniques were used to characterize the structure of oxidized horse cytochrome c at acid pH and high ionic strength. Under these conditions, cytochrome c is known to assume a globular conformation (A state) with properties resembling those of the molten globule state described for other proteins. In order to measure the rate of hydrogen-deuterium exchange for individual backbone amide protons in the A state, samples of oxidized cytochrome c were incubated at 20 {degree}C in D{sub 2}O buffer for time periods ranging from 2 min to 500 h. The exchange reaction was then quenched by transferring the protein to native conditions. The extent of exchange for 44 amide protons trapped in the refolded protein was measured by 2D NMR spectroscopy. The results show that this approach can provide detailed information on H-bonded secondary and tertiary structure in partially folded equilibrium forms of a protein. All of the slowly exchanging amide protons in the three major helices of native cytochrome c are strongly protected from exchange at acid pH, indicating that the A state contains native-like elements of helical secondary structure. By contrast, a number of amide protons involved in irregular tertiary H-bonds of the native structure are only marginally protected in the A state, indicating that these H-bonds are unstable or absent. The H-exchange results suggest that the major helices of cytochrome c and their common hydrophobic domain are largely preserved in the globular acidic form while the loop region of the native structure is flexible and partly disordered.

  19. Hydrogen Passivation of Interstitial Zn Defects in Heteroepitaxial InP Cell Structures and Influence on Device Characteristics

    NASA Technical Reports Server (NTRS)

    Ringel, S. A.; Chatterjee, B.

    2004-01-01

    Hydrogen passivation of heteroepitaxial InP solar cells is of recent interest for deactivation of dislocations and other defects caused by the cell/substrate lattice mismatch that currently limit the photovoltaic performance of these devices. In this paper we present strong evidence that, in addition to direct hydrogen-dislocation interactions, hydrogen forms complexes with the high concentration of interstitial Zn defects present within the p(+) Zn-doped emitter of MOCVD-grown heteroepitaxial InP devices, resulting in a dramatic increase of the forward bias turn-on voltage by as much as 280 mV, from 680 mV to 960 mV. This shift is reproducible and thermally reversible and no such effect is observed for either n(+)p structures or homoepitaxial p(+)n structures grown under identical conditions. A combination of photoluminescence (PL), electrochemical C-V dopant profiling, SIMS and I-V measurements were performed on a set of samples having undergone a matrix of hydrogenation and post-hydrogenation annealing conditions to investigate the source of this voltage enhancement and confirm the expected role of interstitial Zn and hydrogen. A precise correlation between all measurements is demonstrated which indicates that Zn interstitials within the p(+) emitter and their interaction with hydrogen are indeed responsible for this device behavior.

  20. Oxygen and Hydrogen-Induced Surface Reconstruction of Molybdenum and Other Metals

    NASA Astrophysics Data System (ADS)

    Meyer, Joseph A.

    1990-01-01

    In this thesis results are presented for oxygen chemisorption on Mo(100), W(100), and Cu(100), hydrogen adsorption on Mo (100) and co-adsorption of hydrogen and oxygen on Mo(100). In all cases it was found that the adsorbate causes structural rearrangement of the substrate. This was most drastic for the case of oxygen adsorption. New electron energy loss spectroscopy (EELS) results for the O/Mo(100) system indicate that the substrate undergoes a transformation from its original body centered cubic structure to the nearly hexagonal structure of MoO _2 upon increasing oxygen adsorption. Scanning tunneling microscopy was performed for the first time on W(100). The results show that the oxygen causes the removal of every other row of tungsten, and that the rate determining step for the formation of the missing rows is surface diffusion. Oxygen is known to cause the formation on 1-D chains on Cu(100). Monte -Carlo simulations were performed here to extract effective adsorbate-adsorbate interaction energies. When hydrogen is adsorbed on Mo(100) the system can achieve a lower energy state if the hydrogen collectively acts to modify the substrate reconstruction. For some coverages this leads to island formation. To obtain information on the energy gained upon island formation isobars were measured for this system. The binding energy difference between the islands and the dilute phase was surprisingly small, possible reasons for this are discussed. It was also found that finite size effects play a role in the shape of the isobars. The adsorption of water and the co-adsorption of hydrogen and oxygen were studied with EELS and LEED (low energy electron diffraction). For room temperature adsorption of water the molecule completely dissociates. For low coverages islands of the pure elements are then formed, due to the energy gained upon adsorbate induced reconstruction. For low temperature water adsorption it was found that O-H and H_2O molecules are stable on the surface.

  1. Hydrogen diffusion and electronic structure in crystalline and amorphous Ti/sub y/CuH/sub x/

    NASA Technical Reports Server (NTRS)

    Bowman, R. C., Jr.; Rhim, W. K.; Maeland, A. J.; Lynch, J. F.

    1982-01-01

    Hydrogen diffusion behavior and electronic properties of crystalline TiCuHo94, Ti2CuH1.90, and Ti2CuH2.63 and amorphous a-TiCuH1.4 were studied using proton relaxation times, proton Knight shifts, and magnetic susceptibilities. Crystal structure and hydrogen site occupancy have major roles in hydrogen mobility. The density of electron states at E sub F is reduced in amorphous a-TiCuH1.4 compared to the crystalline hydrides.

  2. Di-hydrogen contact induced lattice instabilities and structural dynamics in complex hydride perovskites.

    PubMed

    Schouwink, P; Hagemann, H; Embs, J P; D'Anna, V; Černý, R

    2015-07-01

    The structural phase transitions occurring in a series of perovskite-type complex hydrides based on the tetrahydroborate anion BH4(-) are investigated by means of in situ synchrotron x-ray powder diffraction, vibrational spectroscopy, thermal methods and ab initio calculations in the solid state. Structural dynamics of the BH4 anion are followed with quasi-elastic neutron scattering. We show that unexpected temperature-induced lattice instabilities in perovskite-type ACa(BH4)3 (A = K, Rb, Cs) have their origin in close hydridic di-hydrogen contacts. The rich lattice dynamics lead to coupling between internal B-H vibrations and phonons, resulting in distortions in the high-temperature polymorph that are identical in symmetry to well-known instabilities in oxide perovskites, generally condensing at lower temperatures. It is found that anion-substitution BH4(-) <-> (X = Halide) can relax distortions in ACa(BH4)3 by eliminating coulomb repulsive H(-)···H(-) effects. The interesting nature of phase transition in ACa(BH4)3 enters an unexplored field of weak interactions in ceramic-like host lattices and is the principal motivation for this study. Close di-hydrogen contacts suggest new concepts to tailor crystal symmetries in complex hydride perovskites in the future. PMID:26076047

  3. Crystal structures of morpholinium hydrogen bromanilate at 130, 145 and 180 K

    PubMed Central

    Gotoh, Kazuma; Tahara, Yuki; Ishida, Hiroyuki

    2015-01-01

    Crystal structures of the title compound (systematic name: morpholin-4-ium 2,5-di­bromo-4-hy­droxy-3,6-dioxo­cyclo­hexa-1,4-dien-1-olate), C4H10NO+·C6HBr2O4 −, were determined at three temperatures, viz. 130, 145 and 180 K. The asymmetric unit comprises one morpholinium cation and two halves of crystallographically independent bromanilate monoanions, which are located on inversion centres. The conformations of the two independent bromanilate anions are different from each other with respect to the O—H orientation. In the crystal, the two different anions are linked alternately into a chain along [211] through a short O—H⋯O hydrogen bond, in which the H atom is disordered over two positions. The refined site-occupancy ratios, which are almost constant in the temperature range studied, are 0.49 (3):0.51 (3), 0.52 (3):0.48 (3) and 0.50 (3):0.50 (3), respectively, at 130, 145 and 180 K, and no significant difference in the mol­ecular geometry and the mol­ecular packing is observed at the three temperatures. The morpholinium cation links adjacent chains of anions via N—H⋯O hydrogen bonds, forming a sheet structure parallel to (-111). PMID:26594413

  4. Rotational spectra and gas phase structure of the maleimide - Formic acid doubly hydrogen bonded dimer

    NASA Astrophysics Data System (ADS)

    Pejlovas, Aaron M.; Kukolich, Stephen G.

    2016-03-01

    Rotational transitions were measured for the maleimide - formic acid doubly hydrogen bonded dimer using a Flygare-Balle type pulsed-beam Fourier transform microwave spectrometer. No splittings caused by possible concerted double proton tunneling motion were observed. Experimental rotational constants (MHz), quadrupole coupling constants (MHz), and centrifugal distortion constants (kHz) were determined for the parent and three deuterium substituted isotopologues. The values for the parent are A = 2415.0297(10), B = 784.37494(38), C = 592.44190(33), DJ = 0.0616(64), DJK = -0.118(35), DK = -1.38(15), 1.5χaa = 2.083(14), and 0.25(χbb-χcc) = 1.1565(29). The hydrogen bond lengths were determined using a nonlinear least squares structure fitting program. Rotational constants for this complex are consistent with a planar structure, with an inertial defect of Δ = -0.528 amu Å2. The B3LYP calculation yielded rotational constants within 0.1% of the experimental values.

  5. Active Hydrogenation Catalyst with a Structured, Peptide-Based Outer-Coordination Sphere

    SciTech Connect

    Jain, Avijita; Buchko, Garry W.; Reback, Matthew L.; O'Hagan, Molly J.; Ginovska-Pangovska, Bojana; Linehan, John C.; Shaw, Wendy J.

    2012-10-05

    The synthesis, catalytic activity, and structural features of a rhodium-based hydrogenation catalyst containing a phosphine ligand coupled to a 14-residue peptide are reported. Both CD and NMR spectroscopy show that the peptide adopts a helical structure in 1:1:1 TFE/MeCN/H2O that is maintained when the peptide is attached to the ligand and when the ligand is attached to the metal complex. The metal complex hydrogenates aqueous solutions of 3-butenol to 1-butanol at 360 ± 50 turnovers/Rh/h at 294 K. This peptide- based catalyst represents a starting point for developing and characterizing a peptide-based outer-coordination sphere that can be used to introduce enzyme-like features into molecular catalysts. This work was funded by the US DOE Basic Energy Sciences, Chemical Sciences, Geoscience and Biosciences Division (AJ, JCL and WJS), the Office of Science Early Career Research Program through the Office of Basic Energy Sciences (GWB, MLR and WJS). Part of the research was conducted at the W.R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by U.S. Department of Energy’s Office of Biolog-ical and Environmental Research (BER) program located at Pacific Northwest National Laboratory (PNNL). PNNL is operated by Battelle for the U.S. Department of Energy.

  6. First-Principles Study of the Li-Na-Ca-N-H System: Compound Structures and Hydrogen-Storage Properties

    NASA Astrophysics Data System (ADS)

    Teeratchanan, Pattanasak; Zhou, Fei; Michel, Kyle; Ozolins, Vidvuds

    2012-02-01

    Mixed-metal amides and imides are being widely investigated as potential hydrogen storage materials. Using a combination of first-principle DFT calculations, grand-canonical linear programming, and prototype electrostatic ground state (PEGS) approaches, we predict hydrogen storage reactions in the Li-Na-Ca-N-H system. The enthalpies, entropies, static, zero-point, and T0K vibrational energies of known compounds together with our predictions of some incomplete experimental crystal structures are presented.

  7. Neutral Hydrogen Structures Trace Dust Polarization Angle: Implications for Cosmic Microwave Background Foregrounds

    NASA Astrophysics Data System (ADS)

    Clark, S. E.; Hill, J. Colin; Peek, J. E. G.; Putman, M. E.; Babler, B. L.

    2015-12-01

    Using high-resolution data from the Galactic Arecibo L-Band Feed Array HI (GALFA-Hi) survey, we show that linear structure in Galactic neutral hydrogen (Hi) correlates with the magnetic field orientation implied by Planck 353 GHz polarized dust emission. The structure of the neutral interstellar medium is more tightly coupled to the magnetic field than previously known. At high Galactic latitudes, where the Planck data are noise dominated, the Hi data provide an independent constraint on the Galactic magnetic field orientation, and hence the local dust polarization angle. We detect strong cross-correlations between template maps constructed from estimates of dust intensity combined with either Hi-derived angles, starlight polarization angles, or Planck 353 GHz angles. The Hi data thus provide a new tool in the search for inflationary gravitational wave B -mode polarization in the cosmic microwave background, which is currently limited by dust foreground contamination.

  8. Intermolecular hydrogen bonded and self-assembled β-pleated sheet structures of β-sulfidocarbonyls

    NASA Astrophysics Data System (ADS)

    Hussain, Sahid; Das, Gopal; Chaudhuri, Mihir K.

    2007-06-01

    The three crystal structures of β-sulfidocarbonyls 1, 2 and 3 synthesized from the reaction of acryl amide with cystiene, 1,2-dithiol and 1,3-dithiols, respectively, in water catalyzed by borax, have been determined at 273 K. The characteristic features of the structures are self-assembly through intermolecular hydrogen bonding leading to infinite chains of molecules in one direction, in addition to the stacking of layers of such molecular chains in the perpendicular direction ultimately giving rise to β-pleated sheets of 3D molecular network involving N-H⋯O, C-H⋯O and C-H⋯S bonding in the crystal lattice.

  9. Neutral Hydrogen Structures Trace Dust Polarization Angle: Implications for Cosmic Microwave Background Foregrounds.

    PubMed

    Clark, S E; Hill, J Colin; Peek, J E G; Putman, M E; Babler, B L

    2015-12-11

    Using high-resolution data from the Galactic Arecibo L-Band Feed Array HI (GALFA-Hi) survey, we show that linear structure in Galactic neutral hydrogen (Hi) correlates with the magnetic field orientation implied by Planck 353 GHz polarized dust emission. The structure of the neutral interstellar medium is more tightly coupled to the magnetic field than previously known. At high Galactic latitudes, where the Planck data are noise dominated, the Hi data provide an independent constraint on the Galactic magnetic field orientation, and hence the local dust polarization angle. We detect strong cross-correlations between template maps constructed from estimates of dust intensity combined with either Hi-derived angles, starlight polarization angles, or Planck 353 GHz angles. The Hi data thus provide a new tool in the search for inflationary gravitational wave B-mode polarization in the cosmic microwave background, which is currently limited by dust foreground contamination. PMID:26705622

  10. Structural Investigations of Hydrogen Cyanide Polymers: New Insights Using TMAH Thermochemolysis/GC-MS

    NASA Astrophysics Data System (ADS)

    Minard, Robert D.; Hatcher, Patrick G.; Gourley, Robert C.; Matthews, Clifford N.

    1998-10-01

    Hydrogen cyanide polymers form spontaneously from HCN and traces of base catalysts. It is probable that these polymers played an important role in the early stages of chemical evolution. Nevertheless, their full structural characterization has still not been accomplished. A number of mass spectrometric methods have now been applied to this structural problem including FAB-MS, thermal desorption EI-MS, ESI-MS, APCI-MS and off-line TMAH thermochemolysis/GC-MS. This latter method causes bond cleavage and in situ methylation producing a suite of products which provides valuable insight into the substructural features of HCN polymers and also promises to serve as a sensitive diagnostic tool for detecting the presence of HCN polymers in samples from diverse sources.

  11. Theoretical Hyperfine Structure of the Molecular Hydrogen Ion at the 1 ppm Level.

    PubMed

    Korobov, Vladimir I; Koelemeij, J C J; Hilico, L; Karr, J-Ph

    2016-02-01

    We revisit the mα^{6}(m/M) order corrections to the hyperfine splitting in the H_{2}^{+} ion and find a hitherto unrecognized second-order relativistic contribution associated with the vibrational motion of the nuclei. Inclusion of this correction term produces theoretical predictions which are in excellent agreement with experimental data [K. B. Jefferts, Phys. Rev. Lett. 23, 1476 (1969)], thereby concluding a nearly 50-year-long theoretical quest to explain the experimental results within their 1-ppm error. The agreement between the theory and experiment corroborates the proton structural properties as derived from the hyperfine structure of atomic hydrogen. Our work furthermore indicates that, for future improvements, a full three-body evaluation of the mα^{6}(m/M) correction term will be mandatory. PMID:26894709

  12. Theoretical Hyperfine Structure of the Molecular Hydrogen Ion at the 1 ppm Level

    NASA Astrophysics Data System (ADS)

    Korobov, Vladimir I.; Koelemeij, J. C. J.; Hilico, L.; Karr, J.-Ph.

    2016-02-01

    We revisit the m α6(m /M ) order corrections to the hyperfine splitting in the H2+ ion and find a hitherto unrecognized second-order relativistic contribution associated with the vibrational motion of the nuclei. Inclusion of this correction term produces theoretical predictions which are in excellent agreement with experimental data [K. B. Jefferts, Phys. Rev. Lett. 23, 1476 (1969)], thereby concluding a nearly 50-year-long theoretical quest to explain the experimental results within their 1-ppm error. The agreement between the theory and experiment corroborates the proton structural properties as derived from the hyperfine structure of atomic hydrogen. Our work furthermore indicates that, for future improvements, a full three-body evaluation of the m α6(m /M ) correction term will be mandatory.

  13. Incorporation of hydrogen in CuInSe{sub 2}: Improvements of the structure

    SciTech Connect

    Yakushev, M. V.; Ogorodnikov, I. I.; Volkov, V. A.; Mudryi, A. V.

    2011-09-15

    CuInSe{sub 2} single crystals were ion implanted with a dose of 3 x 10{sup 16} cm{sup -2} by 2.5 keV H{sup +} at 150 and 250 deg. C Before and after the implantation the crystals were analyzed by Rutherford backscattering/channeling (RBS/C) along the <112> axis using 2 MeV He{sup +}. The RBS/C spectra indicate that the implantation at 150 deg. C introduces a layer of radiation damage, whereas after the implantation at 250 deg. C no structural deterioration of the lattice can be seen. Quite the contrary, the RBS/C spectra reveal a considerable decrease in the dechanneling parameters suggesting improvements in the lattice structural quality attributed to the incorporation of hydrogen.

  14. Combined adsorption and oxidation mechanisms of hydrogen sulfide on granulated coal ash.

    PubMed

    Asaoka, Satoshi; Hayakawa, Shinjiro; Kim, Kyung-Hoi; Takeda, Kazuhiko; Katayama, Misaki; Yamamoto, Tamiji

    2012-07-01

    Hydrogen sulfide is highly toxic to benthic organisms and may cause blue tide with depletion of dissolved oxygen in water column due to its oxidation. The purpose of this study is to reveal the combined adsorption and oxidation mechanisms of hydrogen sulfide on granulated coal ash that is a byproduct from coal electric power stations to apply the material as an adsorbent for hydrogen sulfide in natural fields. Sulfur species were identified in both liquid and solid phases to discuss removal mechanisms of the hydrogen sulfide with the granulated coal ash. Batch experiments revealed that hydrogen sulfide decreased significantly by addition of the granulated coal ash and simultaneously the sulfate ion concentration increased. X-ray absorption fine structure analyses showed hydrogen sulfide was adsorbed onto the granulated coal ash and successively oxidized by manganese oxide (III) contained in the material. The oxidation reaction of hydrogen sulfide was coupling with reduction of manganese oxide. On the other hand, iron containing in the granulated coal ash was not involved in hydrogen sulfide oxidation, because the major species of iron in the granulated coal ash was ferrous iron that is not easily reduced by hydrogen sulfide. PMID:22487226

  15. CO interaction with Au atoms adsorbed on terrace, edge and corner sites of the MgO(1 0 0) surface. Electronic structure and vibrational analysis from DFT

    NASA Astrophysics Data System (ADS)

    Ferullo, Ricardo M.; Fuente, Silvia A.; Belelli, Patricia G.; Castellani, Norberto J.

    2009-05-01

    The interaction of CO with Au atoms adsorbed on terrace and low-coordinates sites (edge and corner) of the MgO(1 0 0) surface was studied using the density functional theory (DFT) in combination with embedded cluster models. Surface anionic (O 2-) and neutral oxygen vacancy (F s) sites were considered. In all the cases, the CO stretching frequencies are shifted with respect to free CO with values between -232 and -358 cm -1. In particular, the values for Au on F s at edge and corner are shifted to higher stretching frequencies by 100 and 59 cm -1, respectively, with respect to the value on a perfect MgO(1 0 0) surface. This result is in agreement with recent scanning tunneling microscopy and infrared spectroscopy experiments where a corresponding shift of 70 cm -1 was observed by comparing the measurements on perfect and O-deficient MgO(1 0 0) surfaces. However, these results are different than expected because Au atoms on F s centers are negatively charged and, therefore, according to the generally accepted scheme the CO frequency should be red-shifted with respect to the adsorption on anionic five-coordinated site where the Au atom is essentially neutral. The following picture emerges from the present results: the single occupied HOMO(α) of Au atom on F s at low-coordinated sites consists in two lobes extended sideward the Au atom. For symmetry reasons, this MO overlaps efficiently with the 2π ∗ MO of CO. This bonding contribution to the Au-CO link is counteracted by a Pauli repulsion between the 5σ MO of CO and more internal orbitals (the HOMO-1(α) and the HOMO(β)) centered on Au. In consequence, CO is forced to vibrate against a region with a high electron density. This is the so-called "wall effect" which by itself contributes to higher CO frequency values.

  16. Structure and stability of weakly chemisorbed ethene adsorbed on low-index Cu surfaces: performance of density functionals with van der Waals interactions

    NASA Astrophysics Data System (ADS)

    Hanke, Felix; Dyer, Matthew S.; Björk, Jonas; Persson, Mats

    2012-10-01

    We have investigated the performance of popular density functionals that include van der Waals interactions for the experimentally well-characterized problem of ethene (C2H4) adsorbed on the low-index surfaces of copper. This set of functionals does not only include three van der Waals density functionals—vdwDF-PBE, vdwDF-revPBE and optB86b-vdwDF—and two dispersion-corrected functionals—Grimme and TS-but also local and semi-local functionals such as LDA and PBE. The adsorption system of ethene on copper was chosen because it is a weakly chemisorbed system for which the vdW interactions are expected to give a significant contribution to the adsorption energy. Overall the density functionals that include vdW interactions increased substantially the adsorption energies compared to the PBE density functional but predicted the same adsorption sites and very similar C-C bonding distances except for two of the van der Waals functionals. The top adsorption site was predicted almost exclusively for all functionals on the (110), (100) and (111) surfaces, which is in agreement with experiment for the (110) surface but not for the (100) surface. On the (100) surface, all functionals except two van der Waals density functionals singled out the observed cross-hollow site from the calculated C-C bonding distances and adsorption heights. On the top sites on the (110) surface and the cross-hollow site on the Cu(100) surface, the ethene molecule was found to form a weak chemisorption bond. On the (111) surface, all functionals gave a C-C bonding distance and an adsorption height more typical for physisorption, in agreement with experiments.

  17. COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures.

    PubMed

    Firdaus-Raih, Mohd; Hamdani, Hazrina Yusof; Nadzirin, Nurul; Ramlan, Effirul Ikhwan; Willett, Peter; Artymiuk, Peter J

    2014-07-01

    Hydrogen bonds are crucial factors that stabilize a complex ribonucleic acid (RNA) molecule's three-dimensional (3D) structure. Minute conformational changes can result in variations in the hydrogen bond interactions in a particular structure. Furthermore, networks of hydrogen bonds, especially those found in tight clusters, may be important elements in structure stabilization or function and can therefore be regarded as potential tertiary motifs. In this paper, we describe a graph theoretical algorithm implemented as a web server that is able to search for unbroken networks of hydrogen-bonded base interactions and thus provide an accounting of such interactions in RNA 3D structures. This server, COGNAC (COnnection tables Graphs for Nucleic ACids), is also able to compare the hydrogen bond networks between two structures and from such annotations enable the mapping of atomic level differences that may have resulted from conformational changes due to mutations or binding events. The COGNAC server can be accessed at http://mfrlab.org/grafss/cognac. PMID:24831543

  18. COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures

    PubMed Central

    Firdaus-Raih, Mohd; Hamdani, Hazrina Yusof; Nadzirin, Nurul; Ramlan, Effirul Ikhwan; Willett, Peter; Artymiuk, Peter J.

    2014-01-01

    Hydrogen bonds are crucial factors that stabilize a complex ribonucleic acid (RNA) molecule's three-dimensional (3D) structure. Minute conformational changes can result in variations in the hydrogen bond interactions in a particular structure. Furthermore, networks of hydrogen bonds, especially those found in tight clusters, may be important elements in structure stabilization or function and can therefore be regarded as potential tertiary motifs. In this paper, we describe a graph theoretical algorithm implemented as a web server that is able to search for unbroken networks of hydrogen-bonded base interactions and thus provide an accounting of such interactions in RNA 3D structures. This server, COGNAC (COnnection tables Graphs for Nucleic ACids), is also able to compare the hydrogen bond networks between two structures and from such annotations enable the mapping of atomic level differences that may have resulted from conformational changes due to mutations or binding events. The COGNAC server can be accessed at http://mfrlab.org/grafss/cognac. PMID:24831543

  19. Methane Recovery from Gaseous Mixtures Using Carbonaceous Adsorbents

    NASA Astrophysics Data System (ADS)

    Buczek, Bronisław

    2016-06-01

    Methane recovery from gaseous mixtures has both economical and ecological aspect. Methane from different waste gases like mine gases, nitrogenated natural gases and biogases can be treated as local source for production electric and heat energy. Also occurs the problem of atmosphere pollution with methane that shows over 20 times more harmful environmental effect in comparison to carbon dioxide. One of the ways utilisation such gases is enrichment of methane in the PSA technique, which requires appropriate adsorbents. Active carbons and carbon molecular sieve produced by industry and obtained in laboratory scale were examined as adsorbent for methane recuperation. Porous structure of adsorbents was investigated using densimetry measurements and adsorption of argon at 77.5K. On the basis of adsorption data, the Dubinin-Radushkevich equation parameters, micropore volume (Wo) and characteristics of energy adsorption (Eo) as well as area micropores (Smi) and BET area (SBET) were determined. The usability of adsorbents in enrichment of the methane was evaluated in the test, which simulate the basic stages of PSA process: a) adsorbent degassing, b) pressure raise in column by feed gas, c) cocurrent desorption with analysis of out flowing gas. The composition of gas phase was accepted as the criterion of the suitability of adsorbent for methane separation from gaseous mixtures. The relationship between methane recovery from gas mixture and texture parameters of adsorbents was found.

  20. Mercury adsorption properties of sulfur-impregnated adsorbents

    USGS Publications Warehouse

    Hsi, N.-C.; Rood, M.J.; Rostam-Abadi, M.; Chen, S.; Chang, R.

    2002-01-01

    Carbonaceous and noncarbonaceous adsorbents were impregnated with elemental sulfur to evaluate the chemical and physical properties of the adsorbents and their equilibrium mercury adsorption capacities. Simulated coal combustion flue gas conditions were used to determine the equilibrium adsorption capacities for Hg0 and HgCl2 gases to better understand how to remove mercury from gas streams generated by coal-fired utility power plants. Sulfur was deposited onto the adsorbents by monolayer surface deposition or volume pore filling. Sulfur impregnation increased the total sulfur content and decreased the total and micropore surface areas and pore volumes for all of the adsorbents tested. Adsorbents with sufficient amounts of active adsorption sites and sufficient microporous structure had mercury adsorption capacities up to 4,509 ??g Hg/g adsorbent. Elemental sulfur, organic sulfur, and sulfate were formed on the adsorbents during sulfur impregnation. Correlations were established with R2>0.92 between the equilibrium Hg0/HgCl2 adsorption capacities and the mass concentrations of elemental and organic sulfur. This result indicates that elemental and organic sulfur are important active adsorption sites for Hg0 and HgCl2.

  1. Communication: Dynamical and structural analyses of solid hydrogen under vapor pressure

    SciTech Connect

    Hyeon-Deuk, Kim; Ando, Koji

    2015-11-07

    Nuclear quantum effects play a dominant role in determining the phase diagram of H{sub 2}. With a recently developed quantum molecular dynamics simulation method, we examine dynamical and structural characters of solid H{sub 2} under vapor pressure, demonstrating the difference from liquid and high-pressure solid H{sub 2}. While stable hexagonal close-packed lattice structures are reproduced with reasonable lattice phonon frequencies, the most stable adjacent configuration exhibits a zigzag structure, in contrast with the T-shape liquid configuration. The periodic angular distributions of H{sub 2} molecules indicate that molecules are not a completely free rotor in the vapor-pressure solid reflecting asymmetric potentials from surrounding molecules on adjacent lattice sites. Discrete jumps of librational and H–H vibrational frequencies as well as H–H bond length caused by structural rearrangements under vapor pressure effectively discriminate the liquid and solid phases. The obtained dynamical and structural information of the vapor-pressure H{sub 2} solid will be useful in monitoring thermodynamic states of condensed hydrogens.

  2. Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry.

    PubMed

    Chetty, Palaniappan Sevugan; Mayne, Leland; Lund-Katz, Sissel; Stranz, David; Englander, S Walter; Phillips, Michael C

    2009-11-10

    Apolipoprotein A-I (apoA-I) stabilizes anti-atherogenic high density lipoprotein particles (HDL) in the circulation and governs their biogenesis, metabolism, and functional interactions. To decipher these important structure-function relationships, it will be necessary to understand the structure, stability, and plasticity of the apoA-I molecule. Biophysical studies show that lipid-free apoA-I contains a large amount of alpha-helical structure but the location of this structure and its properties are not established. We used hydrogen-deuterium exchange coupled with a fragmentation-separation method and mass spectrometric analysis to study human lipid-free apoA-I in its physiologically pertinent monomeric form. The acquisition of approximately 100 overlapping peptide fragments that redundantly cover the 243-residue apoA-I polypeptide made it possible to define the positions and stabilities of helical segments and to draw inferences about their interactions and dynamic properties. Residues 7-44, 54-65, 70-78, 81-115, and 147-178 form alpha-helices, accounting for a helical content of 48 +/- 3%, in agreement with circular dichroism measurements (49%). At 3 to 5 kcal/mol in free energy of stabilization, the helices are far more stable than could be achieved in isolation, indicating mutually stabilizing helix bundle interactions. However the helical structure is dynamic, unfolding and refolding in seconds, allowing facile apoA-I reorganization during HDL particle formation and remodeling. PMID:19850866

  3. Communication: Dynamical and structural analyses of solid hydrogen under vapor pressure

    NASA Astrophysics Data System (ADS)

    Hyeon-Deuk, Kim; Ando, Koji

    2015-11-01

    Nuclear quantum effects play a dominant role in determining the phase diagram of H2. With a recently developed quantum molecular dynamics simulation method, we examine dynamical and structural characters of solid H2 under vapor pressure, demonstrating the difference from liquid and high-pressure solid H2. While stable hexagonal close-packed lattice structures are reproduced with reasonable lattice phonon frequencies, the most stable adjacent configuration exhibits a zigzag structure, in contrast with the T-shape liquid configuration. The periodic angular distributions of H2 molecules indicate that molecules are not a completely free rotor in the vapor-pressure solid reflecting asymmetric potentials from surrounding molecules on adjacent lattice sites. Discrete jumps of librational and H-H vibrational frequencies as well as H-H bond length caused by structural rearrangements under vapor pressure effectively discriminate the liquid and solid phases. The obtained dynamical and structural information of the vapor-pressure H2 solid will be useful in monitoring thermodynamic states of condensed hydrogens.

  4. Effect of hydrogenated cardanol on the structure of model membranes studied by EPR and NMR.

    PubMed

    Santeusanio, Stefania; Attanasi, Orazio Antonio; Majer, Roberta; Cangiotti, Michela; Fattori, Alberto; Ottaviani, Maria Francesca

    2013-09-01

    Hydrogenated cardanol (HC) is known to act as an antiobesity, promising antioxidant, and eco-friendly brominating agent. In this respect, it is important to find the way to transport and protect HC into the body; a micellar structure works as the simplest membrane model and may be considered a suitable biocarrier for HC. Therefore, it is useful to analyze the impact of HC in the micellar structure and properties. This study reports a computer aided electron paramagnetic resonance (EPR) and (1)H NMR investigation of structural variations of cetyltrimetylammonium bromide (CTAB) micelles upon insertion of HC at different concentrations and pH variations. Surfactant spin probes inserted in the micelles allowed us to get information on the structure and dynamics of the micelles and the interactions between HC and CTAB. The formation of highly packed HC-CTAB mixed micelles were favored by the occurrence of both hydrophobic (chain-chain) and hydrophilic (between the polar and charged lipid heads) interactions. These interactions were enhanced by neutralization of the acidic HC heads. Different HC localizations into the micelles and micellar structures were identified by changing HC/CTAB relative concentrations and pH. The increase in HC concentration generated mixed micelles characterized by an increased surfactant packing. These results suggested a rod-like shape of the mixed micelles. The increase in pH promoted the insertion of deprotonated HC into less packed micelles, favored by the electrostatic head-head interactions between CTAB and deprotonated-HC surfactants. PMID:23915214

  5. Communication: Dynamical and structural analyses of solid hydrogen under vapor pressure.

    PubMed

    Hyeon-Deuk, Kim; Ando, Koji

    2015-11-01

    Nuclear quantum effects play a dominant role in determining the phase diagram of H2. With a recently developed quantum molecular dynamics simulation method, we examine dynamical and structural characters of solid H2 under vapor pressure, demonstrating the difference from liquid and high-pressure solid H2. While stable hexagonal close-packed lattice structures are reproduced with reasonable lattice phonon frequencies, the most stable adjacent configuration exhibits a zigzag structure, in contrast with the T-shape liquid configuration. The periodic angular distributions of H2 molecules indicate that molecules are not a completely free rotor in the vapor-pressure solid reflecting asymmetric potentials from surrounding molecules on adjacent lattice sites. Discrete jumps of librational and H-H vibrational frequencies as well as H-H bond length caused by structural rearrangements under vapor pressure effectively discriminate the liquid and solid phases. The obtained dynamical and structural information of the vapor-pressure H2 solid will be useful in monitoring thermodynamic states of condensed hydrogens. PMID:26547150

  6. Preparation, structural properties, and hydrogenation activity of highly porous palladium-titania aerogels

    SciTech Connect

    Schneider, M.; Wildberger, M.; Maciejewski, M.; Duff, D.G.; Mallat, T.; Baiker, A. )

    1994-08-01

    Mesoporous to macroporous palladium-titania aerogels with high surface area have been synthesized by the sol-gel-aerogel route. A titania gel was prepared by the addition of an acidic hydrolysant to tetrabutoxytitanium(IV) in methanol. The palladium precursor solutions, added after the redispersion of the titania gel, were either Na[sub 2]PdCl[sub 4], (NH[sub 4])[sub 2]PdCl[sub 4], Pd(acac)[sub 2], or Pd(OAc)[sub 2] dissolved in protic or aprotic solvents. The palladium-titania aerogels have a BET surface area of 170-190 m[sup 2]g[sup [minus]1] after a thermal treatment up to 673 K and contain well-developed anatase crystallites of about 7-8 nm mean size. Depending on the palladium precursor used, the volume-weighted-mean particle size, determined by TEM, varies significantly in the range 21-224 nm, this being independently consistent with XRD line-broadening results. All aerogel samples showed pronounced structural stability of both the titania matrix and the palladium particles towards the pretreatment media used (air or hydrogen) at temperatures up to 773 K. Thermal analysis, combined with mass spectrometry, revealed that the untreated catalysts contain a considerable amount of entrapped organic impurities after high-temperature supercritical drying. Liquid-phase hydrogenations of tras-stilbene and benzophenone were used as test reactions for characterizing the activity and accessibility of the palladium particles. A comparison of the best dispersed Pd(OAc)[sub 2]-derived aerogel catalysts with conventionally impregnated titania-supported palladium catalysts in the liquid-phase hydrogenation of 4-methylbenzaldehyde reveals superior activity and selectivity for the aerogel catalysts. 32 refs., 10 figs., 4 tabs.

  7. ON THE APPARENT ASSOCIATIONS BETWEEN INTERSTELLAR NEUTRAL HYDROGEN STRUCTURE AND (WMAP) HIGH-FREQUENCY CONTINUUM EMISSION

    SciTech Connect

    Verschuur, Gerrit L.

    2010-03-10

    Galactic neutral hydrogen (H I) within a few hundred parsecs of the Sun contains structure with an angular distribution that is similar to small-scale structure observed by the Wilkinson Microwave Anisotropy Probe (WMAP). A total of 108 associated pairs of associated H I and WMAP features have now been cataloged using H I data mapped in 2 km s{sup -1} intervals and these pairs show a typical offset of 0.{sup 0}8. A large-scale statistical test for a direct association is carried out that casts little additional light on whether the these small offsets are merely coincidental or carry information. To pursue the issue further, the nature of several of the features within the foreground H I most closely associated with WMAP structure is examined in detail and it is shown that the cross-correlation coefficient for well-matched pairs of structures is of order unity. It is shown that free-free emission from electrons in unresolved density enhancements in interstellar space could theoretically produce high-frequency radio continuum radiation at the levels observed by WMAP and that such emission will appear nearly flat across the WMAP frequency range. Evidence for such structure in the interstellar medium already exists in the literature. Until higher angular resolution observations of the high-frequency continuum emission structure as well as the apparently associated H I structure become available, it may be difficult to rule out the possibility that some if not all the small-scale structure usually attributed to the cosmic microwave background may have a galactic origin.

  8. On the Apparent Associations Between Interstellar Neutral Hydrogen Structure and (WMAP) High-frequency Continuum Emission

    NASA Astrophysics Data System (ADS)

    Verschuur, Gerrit L.

    2010-03-01

    Galactic neutral hydrogen (H I) within a few hundred parsecs of the Sun contains structure with an angular distribution that is similar to small-scale structure observed by the Wilkinson Microwave Anisotropy Probe (WMAP). A total of 108 associated pairs of associated H I and WMAP features have now been cataloged using H I data mapped in 2 km s-1 intervals and these pairs show a typical offset of 0fdg8. A large-scale statistical test for a direct association is carried out that casts little additional light on whether the these small offsets are merely coincidental or carry information. To pursue the issue further, the nature of several of the features within the foreground H I most closely associated with WMAP structure is examined in detail and it is shown that the cross-correlation coefficient for well-matched pairs of structures is of order unity. It is shown that free-free emission from electrons in unresolved density enhancements in interstellar space could theoretically produce high-frequency radio continuum radiation at the levels observed by WMAP and that such emission will appear nearly flat across the WMAP frequency range. Evidence for such structure in the interstellar medium already exists in the literature. Until higher angular resolution observations of the high-frequency continuum emission structure as well as the apparently associated H I structure become available, it may be difficult to rule out the possibility that some if not all the small-scale structure usually attributed to the cosmic microwave background may have a galactic origin.

  9. Electronic structure, stability and bonding of the Li-N-H hydrogen storage system

    NASA Astrophysics Data System (ADS)

    Song, Y.; Guo, Z. X.

    2006-11-01

    The Li-N-H system holds great promise for on-board hydrogen storage applications, particularly due to reversible interactions among lithium amide (LiNH2) , imide (Li2NH) , and hydride (LiH). However, practical applications of the system are hindered by the relatively high stabilities of the compounds and uncertainty of their reaction paths. Understanding the mechanism of hydrogen interactions with the host structures is essential for further development. Here, we calculated the electronic structures and total energies of lithium hydride (LiH), lithium imide (Li2NH) , and lithium amide (LiNH2) using a first-principles full potential approach. The estimated formation enthalpies for the two-step reactions, Li3N+2H2↔Li2NH+LiH+H2↔LiNH2+2LiH are -162.05 and -40.94kJ/mol , comparable to the experimental values of -165 and -45.5kJ/mol , respectively. The bonding interaction characteristics and the stability of these materials were further analyzed from the electronic structures. It is noted that the N atom bonds unequally with the two H atoms in lithium amide. As a result, the amide LiNH2 can dissociate in two almost equivalent transient steps: Li++(NH2)- ; and (LiNH)-+H+ . The reaction of the relevant species may evolve NH3 as a transient gas in the (LiNH2+LiH) system.

  10. Dinuclear zinc(II) complexes with hydrogen bond donors as structural and functional phosphatase models.

    PubMed

    Bosch, Simone; Comba, Peter; Gahan, Lawrence R; Schenk, Gerhard

    2014-09-01

    It is becoming increasingly apparent that the secondary coordination sphere can have a crucial role in determining the functional properties of biomimetic metal complexes. We have therefore designed and prepared a variety of ligands as metallo-hydrolase mimics, where hydrogen bonding in the second coordination sphere is able to influence the structure of the primary coordination sphere and the substrate binding. The assessment of a structure-function relationship is based on derivates of 2,6-bis{[bis(pyridin-2-ylmethyl)amino]methyl}-4-methylphenol (HBPMP = HL(1)) and 2-{[bis(pyridin-2-ylmethyl)amino]methyl}-6-{[(2-hydroxybenzyl)(pyridin-2-ylmethyl)amino]methyl}-4-methylphenol (H2BPBPMP = H2L(5)), well-known phenolate-based ligands for metallo-hydrolase mimics. The model systems provide similar primary coordination spheres but site-specific modifications in the secondary coordination sphere. Pivaloylamide and amine moieties were chosen to mimic the secondary coordination sphere of the phosphatase models, and the four new ligands H3L(2), H3L(3), HL(4), and H4L(6) vary in the type and geometric position of the H-bond donors and acceptors, responsible for the positioning of the substrate and release of the product molecules. Five dinuclear Zn(II) complexes were prepared and structurally characterized in the solid, and four also in solution. The investigation of the phosphatase activity of four model complexes illustrates the impact of the H-bonding network: the Michaelis-Menten constants (catalyst-substrate binding) for all complexes that support hydrogen bonding are smaller than for the reference complex, and this generally leads to higher catalytic efficiency and higher turnover numbers. PMID:25119813

  11. The interplay of hydrogen bonding and dispersion in phenol dimer and trimer: structures from broadband rotational spectroscopy.

    PubMed

    Seifert, Nathan A; Steber, Amanda L; Neill, Justin L; Pérez, Cristóbal; Zaleski, Daniel P; Pate, Brooks H; Lesarri, Alberto

    2013-07-21

    The structures of the phenol dimer and phenol trimer complexes in the gas phase have been determined using chirped-pulse Fourier transform microwave spectroscopy in the 2-8 GHz band. All fourteen (13)C and (18)O phenol dimer isotopologues were assigned in natural abundance. A full heavy atom experimental substitution structure was determined, and a least-squares fit ground state r0 structure was determined by proper constraint of the M06-2X/6-311++g(d,p) ab initio structure. The structure of phenol dimer features a water dimer-like hydrogen bond, as well as a cooperative contribution from inter-ring dispersion. Comparisons between the experimental structure and previously determined experimental structures, as well as ab initio structures from various levels of theory, are discussed. For phenol trimer, a C3 symmetric barrel-like structure is found, and an experimental substitution structure was determined via measurement of the six unique (13)C isotopologues. The least-squares fit rm((1)) structure reveals a similar interplay between hydrogen bonding and dispersion in the trimer, with water trimer-like hydrogen bonding and C-H···π interactions. PMID:23749053

  12. Ab initio study of the structures and hydrogen storage capacity of (H2)nCH4 compound

    NASA Astrophysics Data System (ADS)

    Wang, Minghui; Cheng, Xinlu; Ren, Dahua; Zhang, Hong; Tang, Yongjian

    2015-05-01

    The hydrogen-rich compound (H2)nCH4 (for n = 1, 2, 3, 4) or for short (H2)nM is one of the most promising hydrogen storage materials. The (H2)4M molecule is the best hydrogen-rich compound among the (H2)nM structures and it can reach the hydrogen storage capacity of 50.2 wt.%. However, the (H2)nM always requires a certain pressure to remain stable. In this work, we first investigated the binding energy of the different structures in (H2)nM and energy barrier of H2 rotation under different pressures at ambient temperature, applying ab initio methods based on van der Waals density functional (vdW-DF). It was found that at 0 GPa, the (H2)nM is not stable, while at 5.8 GPa, the stability of (H2)nM strongly depends on its structure. We further investigate the Raman spectra of (H2)nM structures at 5.8 GPa and found the results were consistent with experiments. Excitingly, we found that boron nitride nanotubes (BNNTs) and graphite and hexagonal boron nitride (h-BN) can be used to store (H2)4M, which give insights into hydrogen storage practical applications.

  13. Molecular structure, intramolecular hydrogen bonding and vibrational spectral investigation of 2-fluoro benzamide - A DFT approach

    NASA Astrophysics Data System (ADS)

    Krishnakumar, V.; Murugeswari, K.; Surumbarkuzhali, N.

    2013-10-01

    The FTIR and FT-Raman spectra of 2-fluoro benzamide (2FBA) have been recorded in the region 4000-400 and 4000-100 cm-1, respectively. The structural analysis, hydrogen bonding, optimized geometry, frequency and intensity of the vibrational bands of 2FBA were obtained by the density functional theory (DFT) with complete relaxation in the potential energy surface using 6-31G** basis set. The harmonic vibrational frequencies were calculated and the scaled values have been compared with experimental FTIR and FT-Raman spectra. The observed and the calculated frequencies are found to be in good agreement. The 13C NMR spectra have been recorded and 13C nuclear magnetic resonance chemical shifts of the molecule were also calculated using the gauge independent atomic orbital (GIAO) method and their respective linear correlations were obtained. The electronic properties, such as HOMO and LUMO energies, were performed by time-dependent DFT (TD-DFT) approach. The Mulliken charges, the values of electric dipole moment (μ) of the molecule were computed using DFT calculations. The change in electron density (ED) in the σ* antibonding orbitals and stabilization energies E(2) have been calculated by natural bond (NBO) analysis to give clear evidence of stabilization originating in the hyper conjugation of hydrogen-bonded interactions.

  14. Molecular Structure and Photoinduced Intramolecular Hydrogen Bonding in 2-Pyrrolylmethylidene Cycloalkanones.

    PubMed

    Sigalov, Mark; Shainyan, Bagrat; Chipanina, Nina; Oznobikhina, Larisa; Strashnikova, Natalia; Sterkhova, Irina

    2015-11-01

    The structures of pyrrolylmethylidene derivatives of 2,3-dihydro-1H-inden-1-one (3), 3,4-dihydro-naphthalen-1(2H)-one (4), and cycloalkanones (5-7) were studied for the first time in the solid state and solution by NMR, IR, and UV spectroscopies supported by DFT quantum mechanical calculations. It was shown that all studied compounds except cycloheptanone derivative 7 both in crystal and in solution exist in the form of dimers where single E or E,E configuration with respect to the exocyclic C═C bond is stabilized by intermolecular hydrogen bonds N-H···O═C. UV irradiation at a wavelength of 365 nm of MeCN or DMSO solutions of 3-6 results, depending on the exposition time and solvent, partial to complete isomerization to the Z or Z,E isomers (in the case of 6, also the Z,Z isomer). The NMR and IR spectroscopy data show the existence of a strong intramolecular hydrogen bond N-H···O═C in the Z moieties of isomerized compounds. The studied compounds are protonated by trifluoroacetic acid at the carbonyl oxygen, in spite of the reverse order of basicity and nucleophilicity of the carbonyl group and the pyrrole ring. Investigation of the behavior of compound 6 with respect to acetate and fluoride anions allows one to consider it as a potential fluoride sensor. PMID:26457975

  15. A Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta

    PubMed Central

    O’Meara, Matthew J.; Leaver-Fay, Andrew; Tyka, Mike; Stein, Amelie; Houlihan, Kevin; DiMaio, Frank; Bradley, Philip; Kortemme, Tanja; Baker, David; Snoeyink, Jack; Kuhlman, Brian

    2015-01-01

    Interactions between polar atoms are challenging to model because at very short ranges they form hydrogen bonds (H-bonds) that are partially covalent in character and exhibit strong orientation preferences; at longer ranges the orientation preferences are lost, but significant electrostatic interactions between charged and partially charged atoms remain. To simultaneously model these two types of behavior, we refined an orientation dependent model of hydrogen bonds [Kortemme et al. 2003] used by the molecular modeling program Rosetta and then combined it with a distance-dependent Coulomb model of electrostatics. The functional form of the H-bond potential is physically motivated and parameters are fit so that H-bond geometries that Rosetta generates closely resemble H-bond geometries in high-resolution crystal structures. The combined potentials improve performance in a variety of scientific benchmarks including decoy discrimination, side chain prediction, and native sequence recovery in protein design simulations, and establishes a new standard energy function for Rosetta. PMID:25866491

  16. Influence of dense quantum plasmas on fine-structure splitting of Lyman doublets of hydrogenic systems

    SciTech Connect

    De, Madhab Ray, Debasis

    2015-05-15

    Relativistic calculations are performed to study the effects of oscillatory quantum plasma screening on the fine-structure splitting between the components of Lyman-α and β line doublets of atomic hydrogen and hydrgen-like argon ion within dense quantum plasmas, where the effective two-body (electron–nucleus) interaction is modeled by the Shukla–Eliasson oscillatory exponential cosine screened-Coulomb potential. The numerical solutions of the radial Dirac equation for the quantum plasma-embedded atomic systems reveal that the oscillatory quantum screening effect suppresses the doublet (energy) splitting substantially and the suppression becomes more prominent at large quantum wave number k{sub q}. In the absence of the oscillatory cosine screening term, much larger amount of suppression is noticed at larger values of k{sub q}, and the corresponding results represent the screening effect of an exponential screened-Coulomb two-body interaction. The Z{sup 4} scaling of the Lyman doublet splitting in low-Z hydrogen isoelectronic series of ions in free space is violated in dense quantum plasma environments. The relativistic data for the doublet splitting in the zero screening (k{sub q} = 0) case are in very good agreement with the NIST reference data, with slight discrepancies (∼0.2%) arising from the neglect of the quantum electrodynamic effects.

  17. Aerospike thrust chamber program. [cumulative damage and maintenance of structural members in hydrogen oxygen engines

    NASA Technical Reports Server (NTRS)

    Campbell, J., Jr.; Cobb, S. M.

    1976-01-01

    An existing, but damaged, 25,000-pound thrust, flightweight, oxygen/hydrogen aerospike rocket thrust chamber was disassembled and partially repaired. A description is presented of the aerospike chamber configuration and of the damage it had suffered. Techniques for aerospike thrust chamber repair were developed, and are described, covering repair procedures for lightweight tubular nozzles, titanium thrust structures, and copper channel combustors. Effort was terminated prior to completion of the repairs and conduct of a planned hot fire test program when it was found that the copper alloy walls of many of the thrust chamber's 24 combustors had been degraded in strength and ductility during the initial fabrication of the thrust chamber. The degradation is discussed and traced to a reaction between oxygen and/or oxides diffused into the copper alloy during fabrication processes and the hydrogen utilized as a brazing furnace atmosphere during the initial assembly operation on many of the combustors. The effects of the H2/O2 reaction within the copper alloy are described.

  18. Simulations of noble gases adsorbed on graphene

    NASA Astrophysics Data System (ADS)

    Maiga, Sidi; Gatica, Silvina

    2014-03-01

    We present results of Grand Canonical Monte Carlo simulations of adsorption of Kr, Ar and Xe on a suspended graphene sheet. We compute the adsorbate-adsorbate interaction by a Lennard-Jones potential. We adopt a hybrid model for the graphene-adsorbate force; in the hybrid model, the potential interaction with the nearest carbon atoms (within a distance rnn) is computed with an atomistic pair potential Ua; for the atoms at r>rnn, we compute the interaction energy as a continuous integration over a carbon uniform sheet with the density of graphene. For the atomistic potential Ua, we assume the anisotropic LJ potential adapted from the graphite-He interaction proposed by Cole et.al. This interaction includes the anisotropy of the C atoms on graphene, which originates in the anisotropic π-bonds. The adsorption isotherms, energy and structure of the layer are obtained and compared with experimental results. We also compare with the adsorption on graphite and carbon nanotubes. This research was supported by NSF/PRDM (Howard University) and NSF (DMR 1006010).

  19. Orbital tomography for highly symmetric adsorbate systems

    NASA Astrophysics Data System (ADS)

    Stadtmüller, B.; Willenbockel, M.; Reinisch, E. M.; Ules, T.; Bocquet, F. C.; Soubatch, S.; Puschnig, P.; Koller, G.; Ramsey, M. G.; Tautz, F. S.; Kumpf, C.

    2012-10-01

    Orbital tomography is a new and very powerful tool to analyze the angular distribution of a photoemission spectroscopy experiment. It was successfully used for organic adsorbate systems to identify (and consequently deconvolute) the contributions of specific molecular orbitals to the photoemission data. The technique was so far limited to surfaces with low symmetry like fcc(110) oriented surfaces, owing to the small number of rotational domains that occur on such surfaces. In this letter we overcome this limitation and present an orbital tomography study of a 3,4,9,10-perylene-tetra-carboxylic-dianhydride (PTCDA) monolayer film adsorbed on Ag(111). Although this system exhibits twelve differently oriented molecules, the angular resolved photoemission data still allow a meaningful analysis of the different local density of states and reveal different electronic structures for symmetrically inequivalent molecules. We also discuss the precision of the orbital tomography technique in terms of counting statistics and linear regression fitting algorithm. Our results demonstrate that orbital tomography is not limited to low-symmetry surfaces, a finding which makes a broad field of complex adsorbate systems accessible to this powerful technique.

  20. Atomic and electronic structure of hydrogen on ZnO (1bar 100) surface: ab initio hybrid calculations

    NASA Astrophysics Data System (ADS)

    Usseinov, A. B.; Kotomin, E. A.; Zhukovskii, Yu F.; Purans, J.; Sorokin, A. V.; Akilbekov, A. T.

    2013-12-01

    Hydrogen atoms unavoidably incorporated into ZnO during growth of bulk samples and thin films considerably affect their electrical conductivity. The results of first principles hybrid LCAO calculations are discussed for hydrogen atoms in the bulk and on the non-polar ZnO (1bar 100) surface. The incorporation energy, the atomic relaxation, the electronic density redistribution and the electronic structure modifications are compared for the surface adsorption and bulk interstitial H positions. It is shown that hydrogen has a strong binding with the surface O ions (2.7 eV) whereas its incorporation into bulk is energetically unfavorable. Surface hydrogen atoms are very shallow donors, thus, contributing to the electronic conductivity.

  1. Surface Segregation in a PdCu Alloy Hydrogen Separation Membrane

    SciTech Connect

    Miller, J.B.; Matranga, C.S.; Gellman, A.J.

    2007-06-01

    Separation of hydrogen from mixed gas streams is an important step for hydrogen generation technologies, including hydrocarbon reforming and coal/biomass gasification. Dense palladium-based membranes have received significant attention for this application because of palladium’s ability to dissociatively adsorb molecular hydrogen at its surface for subsequent transport of hydrogen atoms through its bulk. Alloying palladium with minor components, like copper, has been shown to improve both the membrane’s structural characteristics and resistance to poisoning of its catalytic surface [1]. Surface segregation—a composition difference between the bulk material and its surface—is common in alloys and can affect important surface processes. Rational design of alloy membranes requires that surface segregation be understood, and possibly controlled. In this work, we examine surface segregation in a polycrystalline Pd70Cu30 hydrogen separation membrane as a function of thermal treatment and adsorption of hydrogen sulfide.

  2. Block copolymer adsorbed layers on solids

    NASA Astrophysics Data System (ADS)

    Sen, Mani; Jiang, Naisheng; Gowd, Bhoje; Endoh, Maya; Koga, Tadanori

    Block copolymer thin films offer a simple and effective route to fabricate highly ordered periodic microdomain structures. The fundamental, yet unsolved question is whether these highly oriented microdomain structures persist even near an impenetrable solid wall. We here report the adsorbed structures of polystyrene-block-poly (4-vinylpyridine) (PS-block-P4VP, Mw = 41,000, PS (weight fraction =0.81) formed on planar silicon substrates. Perpendicularly aligned cylindrical microdomains were created by solvent vapor annealing (Gowd et al., Soft Matter, 2014, 10, 7753), and the adsorbed layer was derived by solvent leaching with chloroform, a good solvent for the polymers and thereafter characterized by using atomic force microscopy, scanning electron microscopy, grazing incidence small angle x-ray scattering, and x-ray reflectivity. The results showed that both PS and P4VP chains lie flat on the substrate, forming a microphase-separated structure (MSS) without long-range order. Moreover, a spin-coated PS-block-P4VP thin film annealed under vacuum at 190 °C showed similar MSS on the substrate, indicating the generality of the interfacial polymer structure. Details will be discussed in the presentation. NSF Grant No. CMMI-1332499.

  3. Graph theoretical enumeration of topology-distinct structures for hydrogen fluoride clusters (HF)n (n ≤ 6)

    NASA Astrophysics Data System (ADS)

    Jelil, Mahmutjan; Abaydulla, Alimjan

    2015-07-01

    A graph theoretical procedure to generate all the possible topology-distinct structures for hydrogen fluoride (HF) clusters is presented in this work. The hydrogen bond matrix is defined and used to enumerate the topology-distinct structures of hydrogen fluoride (HF)n (n = 2-8) clusters. From close investigation of the structural patterns obtained, several restrictions that should be satisfied for a structure of the HF clusters to be stable are found. The corresponding digraphs of generated hydrogen bond matrices are used as the theoretical framework to obtain all the topology-distinct local minima for (HF)n (n ≤ 6), at the level of MP2/6-31G**(d, p) of ab initio MO method and B3LYP/6-31G**(d, p) of density functional theory method. For HF clusters up to tetramers, the local minimum structures that we generated are same as those in the literature. For HF pentamers and hexamers, we found some new local minima structures which had not been obtained previously.

  4. Effect of substrate growth temperatures on H diffusion in hydrogenated Si/Si homoepitaxial structures grown by molecular beam epitaxy

    NASA Astrophysics Data System (ADS)

    Shao, Lin; Lee, J. K.; Wang, Y. Q.; Nastasi, M.; Thompson, Phillip E.; David Theodore, N.; Alford, T. L.; Mayer, J. W.; Chen, Peng; Lau, S. S.

    2006-06-01

    We have investigated hydrogen diffusion in hydrogenated <100> Si/Si homoepitaxial structures, which were grown by molecular beam epitaxy at various temperatures. The substrate growth temperature can significantly affect the H diffusion behavior, with higher growth temperatures resulting in deeper H diffusion. For the Si/Si structure grown at the highest temperature of 800 °C, H trapping occurs at the epitaxial Si/Si substrate interface, which results in the formation of (100) oriented microcracks at the interface. The mechanism of H trapping and the potential application of these findings for the development of a method of transferring ultrathin Si layers are discussed.

  5. Studies of intramolecular hydrogen bonds (IMHB): crystal and molecular structure of 2-(2'-hydroxy-phenyl)imidazoles

    NASA Astrophysics Data System (ADS)

    Foces-Foces, Concepción; Llamas-Saiz, Antonio L.; Claramunt, Rosa María; Cabildo, Pilar; Elguero, José

    1998-01-01

    The molecular and crystal structure of 2-(2'-hydroxyphenyl)imidazole (2) and 1-methyl-2-(2'-hydroxyphenyl)imidazole (5) have been determined by X-ray analysis. Compound (2) presents a strong intramolecular hydrogen bond (IMHB) responsible for the planarity of the molecule. In both compounds the molecules form chains through NH…O (compound 2) and OH…N hydrogen bonds (compound 5) but giving rise to the same packing mode. Ab initio calculations (6-31G∗∗) have been carried out on both compounds in order to study the effect of the IMHB on the structure.

  6. Electronic structure of partially hydrogenated Si(100)-( 2 x 1) surfaces prepared by thermal and nonthermal desorption.

    PubMed

    Bobrov, K; Comtet, G; Dujardin, G; Hellner, L

    2001-03-19

    The electronic structure of partially hydrogenated Si(100)- (2 x 1) surfaces, prepared by controlled thermal annealing and nonthermal photon stimulated desorption of fully hydrogenated Si(100) surfaces, has been investigated by using valence band photoemission. Thermal and nonthermal desorption are found to produce very specific electronic surface structures. This led us to the discovery of two specific surface states having binding energies of 1.0 and 0.7 eV associated with the isolated Si dimers and single Si dangling bonds, respectively. PMID:11289998

  7. Equilibrium molecular theory of two-dimensional adsorbate drops on surfaces of heterogeneous adsorbents

    NASA Astrophysics Data System (ADS)

    Tovbin, Yu. K.

    2016-08-01

    A molecular statistical theory for calculating the linear tension of small multicomponent droplets in two-dimensional adsorption systems is developed. The theory describes discrete distributions of molecules in space (on a scale comparable to molecular size) and continuous distributions of molecules (at short distances inside cells) in their translational and vibrational motions. Pair intermolecular interaction potentials (the Mie type potential) in several coordination spheres are considered. For simplicity, it is assumed that distinctions in the sizes of mixture components are slight and comparable to the sizes of adsorbent adsorption centers. Expressions for the pressure tensor components inside small droplets on the heterogeneous surface of an adsorbent are obtained, allowing calculations of the thermodynamic characteristics of a vapor-fluid interface, including linear tension. Problems in refining the molecular theory are discussed: describing the properties of small droplets using a coordination model of their structure, considering the effect an adsorbate has on the state of a near-surface adsorbent region, and the surface heterogeneity factor in the conditions for the formation of droplets.

  8. Radiation grafted adsorbents for newly emerging environmental applications

    NASA Astrophysics Data System (ADS)

    Mahmoud Nasef, Mohamed; Ting, T. M.; Abbasi, Ali; Layeghi-moghaddam, Alireza; Sara Alinezhad, S.; Hashim, Kamaruddin

    2016-01-01

    Radiation induced grafting (RIG) is acquired to prepare a number of adsorbents for newly emerging environmental applications using a single route involving RIG of glycidymethacrylate (GMA) onto polyethylene-polypropylene (PE-PP) non-woven fabric. The grafted fabric was subjected to one of three functionalization reactions to impart desired ionic characters. This included treatment with (1) N-dimethyl-D-glucamine, (2) triethylamine and (3) triethylamine and alkalisation with KOH. Fourier transform infrared spectroscopy (FTIR) and scanning electron microscope (SEM) were used to study the changes in chemical and physical structures of the obtained fibrous adsorbents. The potential applications of the three adsorbents for removal of boron from solutions, capturing CO2 from CO2/N2 mixtures and catalysing transesterification of triacetin/methanol to methyl acetate (biodiesel) were explored. The obtained fibrous adsorbents provide potential alternatives to granular resins for the investigated applications and require further development.

  9. Anomalous thermal denaturing of proteins adsorbed to nanoparticles

    NASA Astrophysics Data System (ADS)

    Teichroeb, J. H.; Forrest, J. A.; Ngai, V.; Jones, L. W.

    2006-09-01

    We have used localized surface plasmon resonance (LSPR) to monitor the structural changes that accompany thermal denaturing of bovine serum albumin (BSA) adsorbed onto gold nanospheres of size 5nm-60nm. The effect of the protein on the LSPR was monitored by visible extinction spectroscopy. The position of the resonance is affected by the conformation of the adsorbed protein layer, and as such can be used as a very sensitive probe of thermal denaturing that is specific to the adsorbed protein. The results are compared to detailed calculations and show that full calculations can lead to significant increases in knowledge where gold nanospheres are used as biosensors. Thermal denaturing on spheres with diameter > 20 nm show strong similarity to bulk calorimetric studies of BSA in solution. BSA adsorbed on nanospheres with d ⩽ 15nm shows a qualitative difference in behavior, suggesting a sensitivity of denaturing characteristics on local surface curvature. This may have important implications for other protein-nanoparticle interactions.

  10. The electronic structure and bonding of hydrogen near a fcc Fe stacking fault

    NASA Astrophysics Data System (ADS)

    Moro, L.; Ferullo, R.; Brizuela, G.; Juan, A.

    2000-02-01

    The atom superposition and electron delocalization molecular orbital (ASED-MO) semiempirical method is used to analyse the atomic hydrogen-Fe interaction. The face centred cubic (fcc) Fe model contains a stacking fault and as a comparison the H-fcc Fe (normal) system is also studied. The solid is represented by a cluster of 180 metallic atoms distributed in five layers. The interstitial atoms localized in different geometric positions found an energetic minimum in a zone close to octahedral interstitial holes in the stacking fault. The electronic structure shows that the H-Fe bond involves mainly the Fe 4s and 4p orbitals and the 1s H orbital. The Fe-Fe bond near H is destabilized, to approximately 27% of its original value.

  11. Flexible double betaines: molecular structures and hydrogen bonding in their crystalline hydrates

    NASA Astrophysics Data System (ADS)

    Wu, De-Dong; Mak, Thomas C. W.

    1994-09-01

    Crystalline hydrates of three flexible double betaines, -OOCCH 2N +Me 2-(CH 2) n-N +Me 2CH 2COO - ( 1n = 2; 2n = 3; 3n = 4) have been isolated and characterized by single-crystal X-ray analysis. 1·2H 2O crystallizes in the monoclinic space group C2/ c with Z = 4; 2·3H 2O and 3·2H 2O are both triclinic, space group Poverline1, with Z = 2 and 1, respectively. The site symmetries of 1, 2 and 3 are C2, C1 and Ci, respectively. The formation of hydrogen bonds generated by water molecules bridging neighboring carboxy oxygen atoms in different modes leads to polymeric zigzag chains in the dihydrates of 1 and 3, and a layer structure in the trihydrate of 2.

  12. Time-resolved pulsed hydrogen/deuterium exchange mass spectrometry probes gaseous proteins structural kinetics.

    PubMed

    Rajabi, Khadijeh

    2015-01-01

    A pulsed hydrogen/deuterium exchange (HDX) method has been developed for rapid monitoring of the exchange kinetics of protein ions with D2O a few milliseconds after electrospray ionization (ESI). The stepwise gradual evolution of HDX of multiply charged protein ions was monitored using the pulsed HDX mass spectrometry technique. Upon introducing a very short pulse of D2O (in the μs to ms time scale) into the linear ion trap (LIT) of a time-of-flight (TOF) mass spectrometer, bimodal distributions were detected for the ions of cytochrome c and ubiquitin. Mechanistic details of HDX reactions for ubiquitin and cytochrome c in the gas phase were uncovered and the structural transitions were followed by analyzing the kinetics of HDX. PMID:25318698

  13. Structure-directing and high-efficiency photocatalytic hydrogen production by Ag clusters.

    PubMed

    Attia, Yasser A; Buceta, David; Blanco-Varela, Carmen; Mohamed, Mona B; Barone, Giampaolo; López-Quintela, M Arturo

    2014-01-29

    H2 production by water splitting is hindered mainly by the lack of low-cost and efficient photocatalysts. Here we show that sub-nanometric silver clusters can catalyze the anisotropic growth of gold nanostructures by preferential adsorption at certain crystal planes of Au seeds, with the result that the final nanostructure can be tuned via the cluster/seed ratio. Such semiconducting Ag clusters are extremely stable and retain their electronic structure even after adsorption at the tips of Au nanorods, enabling various photocatalytic experiments, such as oxygen evolution from basic solutions. In the absence of electron scavengers, UV irradiation generates photoelectrons, which are stored within the nanorods, increasing their Au Fermi level up to the redox pinning limit at 0 V (RHE), where hydrogen evolution occurs with an estimated high efficiency of 10%. This illustrates the considerable potential of very small zerovalent, nonmetallic clusters as novel atomic-level photocatalysts. PMID:24410146

  14. Structure and mechanical properties of tungsten-containing hydrogenated diamond like carbon coatings for space applications

    NASA Astrophysics Data System (ADS)

    Jun, Zheng; Hui, Zhou; Zhi-hua, Wan; Rui-peng, Sang

    Tungsten-containing diamond like carbon (W-C:H) coatings were prepared by unbalanced magnetron sputtering (UBM) using tungsten carbide targets in Ar/C2H2 atmosphere. The structure and mechanical properties of these coatings with different C2H2 flow (from 40 sccm to 140 sccm) were studied. According to the analysis of Raman spectroscopy and the measurement of hardness and Young's modulus about the coatings, it was showed that sp3/sp2 ratio in the coatings changed and the hardness and Young's modulus decreased with increase of the C2H2 flow. Besides, the adhension and friction wear properties of the coatings were evaluated using the scratch test and dry sliding tests respectively. It was found that the coatings exhibited very good adhension and the C2H2 flow (actually the hydrogen) played a very important role in the tribological behavior of the W-C:H coatings in vacuum.

  15. Time-Resolved Pulsed Hydrogen/Deuterium Exchange Mass Spectrometry Probes Gaseous Proteins Structural Kinetics

    NASA Astrophysics Data System (ADS)

    Rajabi, Khadijeh

    2015-01-01

    A pulsed hydrogen/deuterium exchange (HDX) method has been developed for rapid monitoring of the exchange kinetics of protein ions with D2O a few milliseconds after electrospray ionization (ESI). The stepwise gradual evolution of HDX of multiply charged protein ions was monitored using the pulsed HDX mass spectrometry technique. Upon introducing a very short pulse of D2O (in the μs to ms time scale) into the linear ion trap (LIT) of a time-of-flight (TOF) mass spectrometer, bimodal distributions were detected for the ions of cytochrome c and ubiquitin. Mechanistic details of HDX reactions for ubiquitin and cytochrome c in the gas phase were uncovered and the structural transitions were followed by analyzing the kinetics of HDX.

  16. Structural Sensitivity of Carbon Monoxide Hydrogenation by Nano-Structured Iron Catalyst.

    PubMed

    Pour, Ali Nakhaei; Chekreh, Soheila; Housaindokht, Mohammad Reza; Eftekhari, Ali

    2016-06-01

    A new size dependence kinetic equation for chain growth factor in Fischer-Tropsch synthesis (FTS) was developed using a thermodynamic analysis method. For evaluation of structural sensitivity of FTS reaction, a series of iron oxide nanoparticles were prepared as a catalyst via precipitation by microemulsion method. The experimental results indicated that the difference between activation energies for propagation and termination reactions (Et-Ep) decreased with decreasing the catalyst particle size. Calculated size dependent model parameters were employed for evaluation of surface tension energy (σ) and size-independent activation energy for chain growth probabilities. PMID:27427644

  17. Cryogenic adsorber design in a helium refrigeration system

    NASA Astrophysics Data System (ADS)

    Hu, Zhongjun; Zhang, Ning; Li, Zhengyu; Li, Q.

    2012-06-01

    The cryogenic adsorber is specially designed to eliminate impurities in gaseous helium such as O2, and N2 which is normally difficult to remove, based on the reversible cryotrapping of impurities on an activated carbon bed. The coconut shell activated carbon is adopted because of its developed micropore structure and specific surface area. This activated carbon adsorption is mostly determined by the micropore structure, and the adsorption rate of impurities is inversely proportional to the square of the particle sizes. The active carbon absorber's maximum permissible flow velocity is 0.25 m/s. When the gas flow velocity increases, the adsorption diffusion rate of the adsorbent is reduced, because an increase in the magnitude of the velocity resulted in a reduced amount of heat transfer to a unit volume of impure gas. According to the numerical simulation of N2 adsorption dynamics, the appropriate void tower link speed and the saturated adsorption capacity are determined. Then the diameter and height of the adsorber are designed. The mass transfer length should be taken into account in the adsorber height design. The pressure decrease is also calculated. The important factors that influence the adsorber pressure decrease are the void tower speed, the adsorbed layer height, and the active carbon particle shape and size.

  18. Materials for Hydrogen Storage: Structure and Dynamics of Borane Ammonia Complex

    SciTech Connect

    Parvanov, Venci M.; Schenter, Gregory K.; Hess, Nancy J.; Daemen, Luke L.; Hartl, Monika A.; Stowe, Ashley C.; Camaioni, Donald M.; Autrey, Thomas

    2008-08-04

    The activation energies for rotations in low temperature orthorhombic ammonia borane were analyzed and characterized in terms of electronic structure theory. The perdeuterated, 11B- enriched ammonia borane 11BD3ND3 sample was synthesized and the structure was refined from neutron powder diffraction data at 175 K. This temperature has been chosen as median of the range of previously reported NMR measurements of these rotations. A representative molecular cluster model was assembled from the refined geometry and the activation energies were calculated and characterized by analysis of the environmental factors that control the rotational dynamics. The barrier for independent NH3 rotation, Ea = 12.7 kJ/mol, largely depends on the molecular conformational torsion in the solid state geometry. The barrier for independent BH3 rotation, Ea = 38.3 kJ/mol, results from the summation of the effect of molecular torsion and large repulsive intermolecular hydrogen-hydrogen interactions. However, a barrier of Ea = 31.1 kJ/mol was calculated for rotation with preserved molecular conformation. Analysis of the barrier heights and the corresponding rotational pathways shows that rotation of the BH3 group involves strongly correlated rotation of the NH3 end of the molecule. This observation suggests that the barrier from previously reported measurement of BH3 rotation, corresponds to H3B—NH3 correlated rotation. Support for this work by the U.S. Department of Energy, Office of Science, Basic Energy Sciences, Chemical Sciences Division is gratefully acknowledged. Pacific Northwest National Laboratory is operated by Battelle for the US Department of Energy.

  19. Electronic structure, stacking energy, partial charge, and hydrogen bonding in four periodic B-DNA models

    NASA Astrophysics Data System (ADS)

    Poudel, Lokendra; Rulis, Paul; Liang, Lei; Ching, W. Y.

    2014-08-01

    We present a theoretical study of the electronic structure of four periodic B-DNA models labeled (AT)10,(GC)10, (AT)5(GC)5, and (AT-GC)5 where A denotes adenine, T denotes thymine, G denotes guanine, and C denotes cytosine. Each model has ten base pairs with Na counterions to neutralize the negative phosphate group in the backbone. The (AT)5(GC)5 and (AT-GC)5 models contain two and five AT-GC bilayers, respectively. When compared against the average of the two pure models, we estimate the AT-GC bilayer interaction energy to be 19.015 Kcal/mol, which is comparable to the hydrogen bonding energy between base pairs obtained from the literature. Our investigation shows that the stacking of base pairs plays a vital role in the electronic structure, relative stability, bonding, and distribution of partial charges in the DNA models. All four models show a highest occupied molecular orbital (HOMO) to lowest unoccupied molecular orbital (LUMO) gap ranging from 2.14 to 3.12 eV with HOMO states residing on the PO4 + Na functional group and LUMO states originating from the bases. Our calculation implies that the electrical conductance of a DNA molecule should increase with increased base-pair mixing. Interatomic bonding effects in these models are investigated in detail by analyzing the distributions of the calculated bond order values for every pair of atoms in the four models including hydrogen bonding. The counterions significantly affect the gap width, the conductivity, and the distribution of partial charge on the DNA backbone. We also evaluate quantitatively the surface partial charge density on each functional group of the DNA models.

  20. Conformation Distributions in Adsorbed Proteins.

    NASA Astrophysics Data System (ADS)

    Meuse, Curtis W.; Hubbard, Joseph B.; Vrettos, John S.; Smith, Jackson R.; Cicerone, Marcus T.

    2007-03-01

    While the structural basis of protein function is well understood in the biopharmaceutical and biotechnology industries, few methods for the characterization and comparison of protein conformation distributions are available. New methods capable of measuring the stability of protein conformations and the integrity of protein-protein, protein-ligand and protein-surface interactions both in solution and on surfaces are needed to help the development of protein-based products. We are developing infrared spectroscopy methods for the characterization and comparison of molecular conformation distributions in monolayers and in solutions. We have extracted an order parameter describing the orientational and conformational variations of protein functional groups around the average molecular values from a single polarized spectrum. We will discuss the development of these methods and compare them to amide hydrogen/deuterium exchange methods for albumin in solution and on different polymer surfaces to show that our order parameter is related to protein stability.