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Sample records for inhibiting steady-state translation

  1. Explicit expression for the steady-state translation rate in the infinite-dimensional homogeneous ribosome flow model.

    PubMed

    Zarai, Yoram; Margaliot, Michael; Tuller, Tamir

    2013-01-01

    Gene translation is a central stage in the intracellular process of protein synthesis. Gene translation proceeds in three major stages: initiation, elongation, and termination. During the elongation step, ribosomes (intracellular macromolecules) link amino acids together in the order specified by messenger RNA (mRNA) molecules. The homogeneous ribosome flow model (HRFM) is a mathematical model of translation-elongation under the assumption of constant elongation rate along the mRNA sequence. The HRFM includes $(n)$ first-order nonlinear ordinary differential equations, where $(n)$ represents the length of the mRNA sequence, and two positive parameters: ribosomal initiation rate and the (constant) elongation rate. Here, we analyze the HRFM when $(n)$ goes to infinity and derive a simple expression for the steady-state protein synthesis rate. We also derive bounds that show that the behavior of the HRFM for finite, and relatively small, values of $(n)$ is already in good agreement with the closed-form result in the infinite-dimensional case. For example, for $(n=15)$, the relative error is already less than 4 percent. Our results can, thus, be used in practice for analyzing the behavior of finite-dimensional HRFMs that model translation. To demonstrate this, we apply our approach to estimate the mean initiation rate in M. musculus, finding it to be around 0.17 codons per second. PMID:24384716

  2. SALT (System Analysis Language Translater): A steady state and dynamic systems code

    SciTech Connect

    Berry, G.; Geyer, H.

    1983-01-01

    SALT (System Analysis Language Translater) is a lumped parameter approach to system analysis which is totally modular. The modules are all precompiled and only the main program, which is generated by SALT, needs to be compiled for each unique system configuration. This is a departure from other lumped parameter codes where all models are written by MACROS and then compiled for each unique configuration, usually after all of the models are lumped together and sorted to eliminate undetermined variables. The SALT code contains a robust and sophisticated steady-sate finder (non-linear equation solver), optimization capability and enhanced GEAR integration scheme which makes use of sparsity and algebraic constraints. The SALT systems code has been used for various technologies. The code was originally developed for open-cycle magnetohydrodynamic (MHD) systems. It was easily extended to liquid metal MHD systems by simply adding the appropriate models and property libraries. Similarly, the model and property libraries were expanded to handle fuel cell systems, flue gas desulfurization systems, combined cycle gasification systems, fluidized bed combustion systems, ocean thermal energy conversion systems, geothermal systems, nuclear systems, and conventional coal-fired power plants. Obviously, the SALT systems code is extremely flexible to be able to handle all of these diverse systems. At present, the dynamic option has only been used for LMFBR nuclear power plants and geothermal power plants. However, it can easily be extended to other systems and can be used for analyzing control problems. 12 refs.

  3. Effect of temperature and chloride on steady-state inhibition of angiotensin I-converting enzyme by enalaprilat and ramiprilat.

    PubMed Central

    Skoglof, A; Göthe, P O; Deinum, J

    1990-01-01

    The kinetics of the steady-state inhibition of angiotension I-converting enzyme (EC 3.4.15.1) at 25 degrees C and 37 degrees C with enalaprilat and ramiprilat can be simulated, assuming only one inhibitor-binding site, consistent with a 1:1 stoichiometry if the protein concentration was determined by amino acid analysis. In this temperature range the apparent inhibition constants for ramiprilat and enalaprilat were roughly doubled by a decrease in the chloride concentration from 0.300 M to 0.120 M. PMID:2176463

  4. Inhibition of steady-state smooth pursuit and catch-up saccades by abrupt visual and auditory onsets.

    PubMed

    Kerzel, Dirk; Born, Sabine; Souto, David

    2010-11-01

    It is known that visual transients prolong saccadic latency and reduce saccadic frequency. The latter effect was attributed to subcortical structures because it occurred only 60-70 ms after stimulus onset. We examined the effects of large task-irrelevant transients on steady-state pursuit and the generation of catch-up saccades. Two screen-wide stripes of equal contrast (4, 20, or 100%) were briefly flashed at equal eccentricities (3, 6, or 12°) from the pursuit target. About 100 ms after flash onset, we observed that pursuit gain dropped by 6-12% and catch-up saccades were entirely suppressed. The relatively long latency of the inhibition suggests that it results from cortical mechanisms that may act by promoting fixation or the deployment of attention over the visual field. In addition, we show that a loud irrelevant sound is able to generate the same inhibition of saccades as visual transients, whereas it only induces a weak modulation of pursuit gain, indicating a privileged access of acoustic information to the saccadic system. Finally, irrelevant changes in motion direction orthogonal to pursuit had a smaller and later inhibitory effect. PMID:20844111

  5. Steady-state kinetics with nitric oxide reductase (NOR): new considerations on substrate inhibition profile and catalytic mechanism.

    PubMed

    Duarte, Américo G; Cordas, Cristina M; Moura, José J G; Moura, Isabel

    2014-03-01

    Nitric oxide reductase (NOR) from denitrifying bacteria is an integral membrane protein that catalyses the two electron reduction of NO to N2O, as part of the denitrification process, being responsible for an exclusive reaction, the NN bond formation, the key step of this metabolic pathway. Additionally, this class of enzymes also presents residual oxidoreductase activity, reducing O2 to H2O in a four electron/proton reaction. In this work we report, for the first time, steady-state kinetics with the Pseudomonas nautica NOR, either in the presence of its physiological electron donor (cyt. c552) or immobilised on a graphite electrode surface, in the presence of its known substrates, namely NO or O2. The obtained results show that the enzyme has high affinity for its natural substrate, NO, and different kinetic profiles according to the electron donor used. The kinetic data, as shown by the pH dependence, is modelled by ionisable amino acid residues nearby the di-nuclear catalytic site. The catalytic mechanism is revised and a mononitrosyl-non-heme Fe complex (FeB(II)-NO) species is favoured as the first catalytic intermediate involved on the NO reduction. PMID:24412239

  6. Steady state kinetics and inhibition of HIV-1 reverse transcriptase by a non-nucleoside dipyridodiazepinone, BI-RG-587, using a heteropolymeric template.

    PubMed Central

    Kopp, E B; Miglietta, J J; Shrutkowski, A G; Shih, C K; Grob, P M; Skoog, M T

    1991-01-01

    Steady state kinetics and inhibition by a dipyridodiazepinone of the reverse transcriptase from human immunodeficiency virus type 1 (HIV) were studied using a heteropolymeric RNA template with a sequence from the authentic initiation site on the HIV genome. For addition of the first deoxynucleotide to primer, kcat/KM is 0.05 (nM-min)-1 and KM is 10 nM. When all 4 deoxynucleotide triphosphates are present and processive synthesis occurs, catalysis is less efficient; kcat/KM = .0077 (nM-min)-1 and KM = 100 nM for dATP. These results are consistent with a rate determining conformation change involved in translocation of the enzyme along the template. Inhibition by the dipyridodiazepinone BI-RG-587 is noncompetitive with respect to both nucleotide and template-primer; this compound decreases Vmax but does not affect KM. Thus, this inhibitor binds to a site distinct from the substrate binding sites with Ki of 220 nM. Inhibition by BI-RG-587 results in a uniform decrease in amount of products of all lengths rather than a shift from longer to shorter products, suggesting the inhibitor does not affect processivity of reverse transcriptase. Images PMID:1711678

  7. Steady-state kinetics and inhibition studies of the aldol condensation reaction catalyzed by bovine liver and Escherichia coli 2-keto-4-hydroxyglutarate aldolase.

    PubMed

    Grady, S R; Wang, J K; Dekker, E E

    1981-04-28

    Two sensitive assays, one which fluorometrically measures only the L isomer of 2-keto-4-hydroxyglutarate after decarboxylation to L-malate and the other which spectrophotometrically determines both enantiomers by reductive amination with glutamate dehydrogenase, are described. By use of these assays, the steady-state kinetics of the aldol condensation of pyruvate with glyoxylate, as catalyzed by 2-keto-4-hydroxyglutarate aldolase from either bovine liver or Escherichia coli, were studied as was the inhibition of this reaction by glyoxylate and other anions. For the E. coli aldolase, double-reciprocal plots are linear except at high (above 5 mM) glyoxylate concentrations; apparent Km values increase with increasing concentrations of the fixed substrate. The data are consistent with an ordered reaction sequence. Inhibition by halides follows the lyotropic or Hofmeister series. Esters are not good inhibitors; mono-, di-, and tricarboxylic acids are increasingly inhibitory. Of the substrate analogues tested, hydroxypyruvate is the most potent inhibitor. Inhibition studies with citrate, acetaldehyde, and glyoxylate (all competitive inhibitors) suggest there are two domains at the active site-the Schiff base forming lysyl residue which interacts with carbonyl analogues (like acetaldehyde) and a center of positive charge which binds anions (like citrate). In contrast to the bacterial enzyme, liver 2-keto-4-hydroxyglutarate aldolase is inhibited in a competitive manner by much lower concentrations (0.1 mM or even lower) of glyoxylate. Many salts and some carboxylic acids activate the liver enzyme. Similarly, substrate analogues like 2-ketobutyrate and fluoropyruvate are mild activators; no effect is seen with acetaldehyde. Besides glyoxylate, only glyoxal, 2-ketoglutarate, and hydroxypyruvate inhibit the aldol condensation reaction. A uniform value of 1 is found for the number of inhibitor molecules bound per active site of either liver or E. coli 2-keto-4-hydroxyglutarate

  8. Thermodynamics of Stability of Nonequilibrium Steady States.

    ERIC Educational Resources Information Center

    Rastogi, R. P.; Shabd, Ram

    1983-01-01

    Presented is a concise and critical account of developments in nonequilibrium thermodynamics. The criterion for stability of nonequilibrium steady states is critically examined for consecutive and monomolecular triangular reactions, autocatalytic reactions, auto-inhibited reactions, and the Lotka-Volterra model. (JN)

  9. Steady State Dense Gas Dispersion

    Energy Science and Technology Software Center (ESTSC)

    1995-03-01

    SLAB-LLNL is a steady-state one-dimensional program which calculates the atmospheric dispersion of a heavier than air gas that is continuously released at ground level. The model is based on the steady-state crosswind-averaged conservation equations of species, mass, energy, and momentum. It uses the air entrainment concept to account for the turbulent mixing of the gas cloud with the surrounding atmosphere and similarity profiles to determine the crosswind dependence.

  10. Staffing in a Steady State.

    ERIC Educational Resources Information Center

    Owens, J. A.

    1982-01-01

    Options for faculty utilization in a steady state are examined, with consideration for their economy or ability to increase turnover or flexibility: early retirement, part retirement, retraining, exchange with other institutions or industry, and fixed-term appointments or lecturer positions. (MSE)

  11. Inconsistencies in steady state thermodynamics

    NASA Astrophysics Data System (ADS)

    Dickman, Ronald; Motai, Ricardo

    2014-03-01

    We address the issue of extending thermodynamics to nonequilibrium steady states. Using driven stochastic lattice gases, we ask whether consistent definitions of an effective chemical potential μ, and an effective temperature Te, are possible. These quantities are determined via zero-flux conditions of particles and energy between the driven system and a reservoir. For the models considered here, the fluxes are given in terms of certain stationary average densities, eliminating the need to perturb the system by actually exchanging particles; μ and Te are thereby obtained via open-circuit measurements, using a virtual reservoir. In the lattice gas with nearest-neighbor exclusion, temperature is not relevant, and we find that the effective chemical potential, a function of density and drive strength, satisfies the zeroth law, and correctly predicts the densities of coexisting systems. In the Katz-Lebowitz-Spohn driven lattice gas, both μ and Te need to be defined. We show analytically that the zeroth law is violated, and determine the size of the violations numerically. Our results highlight a fundamental inconsistency in the extension of thermodynamics to nonequilibrium steady states. Research supported by CNPq, Brazil.

  12. Irreversible processes at nonequilibrium steady states

    PubMed Central

    Fox, Ronald Forrest

    1979-01-01

    It is shown that a Liapunov criterion exists for the stability of nonequilibrium steady states. This criterion is based upon the fluctuation-dissipation relation, as was first pointed out by Keizer. At steady states, the Liapunov function is constructed from the covariance matrix for the thermodynamic variables. Unlike the situation around equilibrium, at steady states the covariance matrix and the “excess entropy” matrix are not equivalent. The excess entropy, which serves as the Liapunov function around equilibrium, does not work in this capacity at steady states. Keizer's Liapunov function must be viewed as the first correct candidate for a proper Liapunov function for steady states. PMID:16592649

  13. Predicting and Understanding the Enzymatic Inhibition of Human Peroxiredoxin 5 by 4-Substituted Pyrocatechols by Combining Funnel Metadynamics, Solution NMR, and Steady-State Kinetics.

    PubMed

    Chow, Melissa L; Troussicot, Laura; Martin, Marie; Doumèche, Bastien; Guillière, Florence; Lancelin, Jean-Marc

    2016-06-21

    Funnel metadynamics is a kind of computational simulation used to enhance the sampling of protein-ligand binding events in solution. By characterization of the binding interaction events, an estimated absolute binding free energy can be calculated. Nuclear magnetic resonance and funnel metadynamics were used to evaluate the binding of pyrocatechol derivatives (catechol, 4-methylcatechol, and 4-tert-butylcatechol) to human peroxiredoxin 5. Human peroxiredoxins are peroxidases involved in cellular peroxide homeostasis. Recently, overexpressed or suppressed peroxiredoxin levels have been linked to various diseases. Here, the catechol derivatives were found to be inhibitors against human peroxiredoxin 5 through a partial mixed type noncompetitive mechanism. Funnel metadynamics provided a microscopic model for interpreting the inhibition mechanism. Correlations were observed between the inhibition constants and the absolute binding free energy. Overall, this study showcases the fact that funnel metadynamics simulations can be employed as a preliminary approach to gain an in-depth understanding of potential enzyme inhibitors. PMID:27239955

  14. Proteome-wide analysis of the amino terminal status of Escherichia coli proteins at the steady-state and upon deformylation inhibition.

    PubMed

    Bienvenut, Willy V; Giglione, Carmela; Meinnel, Thierry

    2015-07-01

    A proteome wide analysis was performed in Escherichia coli to identify the impact on protein N-termini of actinonin, an antibiotic specifically inhibiting peptide deformylase (PDF). A strategy and tool suite (SILProNaQ) was employed to provide large-scale quantitation of N-terminal modifications. In control conditions, more than 1000 unique N-termini were identified with 56% showing initiator methionine removal. Additional modifications corresponded to partial or complete Nα-acetylation (10%) and N-formyl retention (5%). Among the proteins undergoing these N-terminal modifications, 140 unique N-termini from translocated membrane proteins were highlighted. The very early time-course impact of actinonin was followed after addition of bacteriostatic concentrations of the drug. Under these conditions, 26% of all proteins did not undergo deformylation any longer after 10 min, a value reaching more than 60% of all characterized proteins after 40 min of treatment. The N-formylation ratio measured on individual proteins increased with the same trend. Upon early PDF inhibition, two major categories of proteins retained their N-formyl group: a large number of inner membrane proteins and many proteins involved in protein synthesis including factors assisting the nascent chains in early cotranslational events. All MS data have been deposited in the ProteomeXchange with identifiers PXD001979, PXD002012 and PXD001983 (http://proteomecentral.proteomexchange.org/dataset/PXD001979, http://proteomecentral.proteomexchange.org/dataset/PXD002012 and http://proteomecentral.proteomexchange.org/dataset/PXD001983). PMID:26017780

  15. Venusian hydrology: Steady state reconsidered

    NASA Technical Reports Server (NTRS)

    Grinspoon, David H.

    1992-01-01

    In 1987, Grinspoon proposed that the data on hydrogen abundance, isotopic composition, and escape rate were consistent with the hypothesis that water on Venus might be in steady state rather than monotonic decline since the dawn of time. This conclusion was partially based on a derived water lifetime against nonthermal escape of approximately 10(exp 8) yr. De Bergh et al., preferring the earlier Pioneer Venus value of 200 ppm water to the significantly lower value detected by Bezard et al., found H2O lifetimes of greater than 10(exp 9) yr. Donahue and Hodges derived H2O lifetimes of 0.4-5 x 10 (exp 9) yr. Both these analyses used estimates of H escape flux between 0.4 x 10(exp 7) and 1 x 10(exp 7) cm(exp -2)s(exp -1) from Rodriguez et al. Yet in more recent Monte Carlo modeling, Hodges and Tinsley found an escape flux due to charge exchange with hot H(+) of 2.8 x 10(exp 7) cm(exp -2)s(exp -1). McElroy et al. estimated an escape flux of 8 x 10(exp 6) cm(exp -2)s(exp -1) from collisions with hot O produced by dissociative recombination of O2(+). Brace et al. estimated an escape flux of 5 x 10(exp 6) cm(exp -2)s(exp -1) from ion escape from the ionotail of Venus. The combined estimated escape flux from all these processes is approximately 4 x 10(exp 7) cm(exp -2)s(exp -1). The most sophisticated analysis to date of near-IR radiation from Venus' nightside reveals a water mixing ratio of approximately 30 ppm, suggesting a lifetime against escape for water of less than 10(exp 8) yr. Large uncertainties remain in these quantities, yet the data point toward a steady state. Further evaluation of these uncertainties, and new evolutionary modeling incorporating estimates of the outgassing rate from post-Magellan estimates of the volcanic resurfacing rate are presented.

  16. Steady State Tokamak Equilibria without Current Drive

    SciTech Connect

    Shaing, K.C.; Aydemir, A.Y.; Lin-Liu, Y.R.; Miller, R.L.

    1997-11-01

    Steady state tokamak equilibria without current drive are found. This is made possible by including the potato bootstrap current close to the magnetic axis. Tokamaks with this class of equilibria do not need seed current or current drive, and are intrinsically steady state. {copyright} {ital 1997} {ital The American Physical Society}

  17. Optimal Control of Transitions between Nonequilibrium Steady States

    PubMed Central

    Zulkowski, Patrick R.; Sivak, David A.; DeWeese, Michael R.

    2013-01-01

    Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano-Sasa Y-value, we extend a recently developed geometrical framework for determining optimal protocols so that it can be applied to systems driven from nonequilibrium steady states. We calculate and numerically verify optimal protocols for a colloidal particle dragged through solution by a translating optical trap with two controllable parameters. We offer experimental predictions, specifically that optimal protocols are significantly less costly than naive ones. Optimal protocols similar to these may ultimately point to design principles for biological energy transduction systems and guide the design of artificial molecular machines. PMID:24386112

  18. Steady state response of unsymmetrically laminated plates

    SciTech Connect

    Hosokawa, Kenji; Kawashima, Katsuya; Sakata, Toshiyuki

    1995-11-01

    A numerical approach for analyzing the forced vibration problem of a symmetrically laminated FRP (fiber reinforced plastic) composite plate was proposed by the authors. In the present paper, this approach is modified for application to an unsymmetrically laminated FRP composite plate. Numerical calculations are carried out for the clamped antisymmetrically laminated rectangular and elliptical plates which are a kind of unsymmetrically laminated plate. Then,, the effects of the lamina material and the fiber orientation angle on the steady state response are discussed. Furthermore, it is investigated that what structural damping factor is most influenced on the steady state response of an antisymmetrically laminated plate.

  19. The Politics of the Steady State

    ERIC Educational Resources Information Center

    Taylor, Charles

    1978-01-01

    A steady state society has limits pertaining to population size, non-renewable resources, and production which emits heat or substances into soil, water, or the atmosphere. Respecting these limits means renouncing exponential quantitative growth and accepting a universally available consumption standard. (SW)

  20. Steady-state inductive spheromak operation

    DOEpatents

    Janos, A.C.; Jardin, S.C.; Yamada, M.

    1985-02-20

    The inductively formed spheromak configuration (S-1) can be maintained in a highly stable and controlled fashion. The method described eliminates the restriction to pulsed spheromak plasmas or the use of electrodes for steady-state operation, and, therefore, is a reactor-relevant formation and sustainment method.

  1. Steady-state spheromak reactor studies. Revision

    SciTech Connect

    Krakowski, R.A.; Hagenson, R.L.

    1985-01-01

    After summarizing the essential elements of a gun-sustained spheromak, the potential for a steady-state is explored by means of a comprehensive physics/engineering/costing model. A range of cost-optimized reactor design point is presented, and the sensitivity of cost to key physics, engineering, and operational variables is reported.

  2. Steady state compact toroidal plasma production

    DOEpatents

    Turner, William C.

    1986-01-01

    Apparatus and method for maintaining steady state compact toroidal plasmas. A compact toroidal plasma is formed by a magnetized coaxial plasma gun and held in close proximity to the gun electrodes by applied magnetic fields or magnetic fields produced by image currents in conducting walls. Voltage supply means maintains a constant potential across the electrodes producing an increasing magnetic helicity which drives the plasma away from a minimum energy state. The plasma globally relaxes to a new minimum energy state, conserving helicity according to Taylor's relaxation hypothesis, and injecting net helicity into the core of the compact toroidal plasma. Controlling the voltage so as to inject net helicity at a predetermined rate based on dissipative processes maintains or increases the compact toroidal plasma in a time averaged steady state mode.

  3. On Typicality in Nonequilibrium Steady States

    NASA Astrophysics Data System (ADS)

    Evans, Denis J.; Williams, Stephen R.; Searles, Debra J.; Rondoni, Lamberto

    2016-06-01

    From the statistical mechanical viewpoint, relaxation of macroscopic systems and response theory rest on a notion of typicality, according to which the behavior of single macroscopic objects is given by appropriate ensembles: ensemble averages of observable quantities represent the measurements performed on single objects, because "almost all" objects share the same fate. In the case of non-dissipative dynamics and relaxation toward equilibrium states, "almost all" is referred to invariant probability distributions that are absolutely continuous with respect to the Lebesgue measure. In other words, the collection of initial micro-states (single systems) that do not follow the ensemble is supposed to constitute a set of vanishing, phase space volume. This approach is problematic in the case of dissipative dynamics and relaxation to nonequilibrium steady states, because the relevant invariant distributions attribute probability 1 to sets of zero volume, while evolution commonly begins in equilibrium states, i.e., in sets of full phase space volume. We consider the relaxation of classical, thermostatted particle systems to nonequilibrium steady states. We show that the dynamical condition known as Ω T-mixing is necessary and sufficient for relaxation of ensemble averages to steady state values. Moreover, we find that the condition known as weak T-mixing applied to smooth observables is sufficient for ensemble relaxation to be independent of the initial ensemble. Lastly, we show that weak T-mixing provides a notion of typicality for dissipative dynamics that is based on the (non-invariant) Lebesgue measure, and that we call physical ergodicity.

  4. On Typicality in Nonequilibrium Steady States

    NASA Astrophysics Data System (ADS)

    Evans, Denis J.; Williams, Stephen R.; Searles, Debra J.; Rondoni, Lamberto

    2016-08-01

    From the statistical mechanical viewpoint, relaxation of macroscopic systems and response theory rest on a notion of typicality, according to which the behavior of single macroscopic objects is given by appropriate ensembles: ensemble averages of observable quantities represent the measurements performed on single objects, because " almost all" objects share the same fate. In the case of non-dissipative dynamics and relaxation toward equilibrium states, " almost all" is referred to invariant probability distributions that are absolutely continuous with respect to the Lebesgue measure. In other words, the collection of initial micro-states (single systems) that do not follow the ensemble is supposed to constitute a set of vanishing, phase space volume. This approach is problematic in the case of dissipative dynamics and relaxation to nonequilibrium steady states, because the relevant invariant distributions attribute probability 1 to sets of zero volume, while evolution commonly begins in equilibrium states, i.e., in sets of full phase space volume. We consider the relaxation of classical, thermostatted particle systems to nonequilibrium steady states. We show that the dynamical condition known as Ω T-mixing is necessary and sufficient for relaxation of ensemble averages to steady state values. Moreover, we find that the condition known as weak T-mixing applied to smooth observables is sufficient for ensemble relaxation to be independent of the initial ensemble. Lastly, we show that weak T-mixing provides a notion of typicality for dissipative dynamics that is based on the (non-invariant) Lebesgue measure, and that we call physical ergodicity.

  5. Theory of Steady-State Superradiance

    NASA Astrophysics Data System (ADS)

    Xu, Minghui

    In this thesis, I describe the theoretical development of the superradiant laser, or laser in the extreme bad-cavity regime. In this regime, the cavity decay rate is much greater than the atomic dynamics. The atoms emit photons into the cavity mode superradiantly in steady state. We develop group-theoretic methods that enable us to exactly solve mesoscopic systems with hundreds of atoms. We demonstrate the synchronization of atomic dipoles in steady-state superradiance. With this synchronized system, we propose conditional Ramsey spectroscopy which allows us to observe Ramsey fringes indefinitely, even in the presence of atomic decoherence. Furthermore, we explore manifestations of synchronization in the quantum realm with two superradiant atomic ensembles. We show that two such ensembles exhibit a dynamical phase transition from two disparate oscillators to quantum phase-locked dynamics. Finally, we study the mechanical eect of the light-atom interaction in the steady-state superradiance. We find efficient many-body cooling of atoms. The work described in this thesis lays the theoretical foundation for the superradiant laser and for a potential future of active optical frequency standards.

  6. An FGFR1-SPRY2 Signaling Axis Limits Basal Cell Proliferation in the Steady-State Airway Epithelium

    PubMed Central

    Balasooriya, Gayan I.; Johnson, Jo-Anne; Basson, M. Albert; Rawlins, Emma L.

    2016-01-01

    Summary The steady-state airway epithelium has a low rate of stem cell turnover but can nevertheless mount a rapid proliferative response following injury. This suggests a mechanism to restrain proliferation at steady state. One such mechanism has been identified in skeletal muscle in which pro-proliferative FGFR1 signaling is antagonized by SPRY1 to maintain satellite cell quiescence. Surprisingly, we found that deletion of Fgfr1 or Spry2 in basal cells of the adult mouse trachea caused an increase in steady-state proliferation. We show that in airway basal cells, SPRY2 is post-translationally modified in response to FGFR1 signaling. This allows SPRY2 to inhibit intracellular signaling downstream of other receptor tyrosine kinases and restrain basal cell proliferation. An FGFR1-SPRY2 signaling axis has previously been characterized in cell lines in vitro. We now demonstrate an in vivo biological function of this interaction and thus identify an active signaling mechanism that maintains quiescence in the airway epithelium. PMID:27046834

  7. Siple Dome: Is it in Steady State?

    NASA Astrophysics Data System (ADS)

    Pettit, E. C.; Waddington, E. D.; Nereson, N. A.; Zumberge, M. A.; Hamilton, G. S.

    2001-12-01

    Changes in the West Antarctic Ice Sheet since the end of the last ice age have implications for how we interpret its present behavior, in terms of both its stability and its record of climate history. Siple Dome, the ridge between Ice Streams C and D, is not presently thinning and is close to being in balance with present environmental conditions. We present three independent measurements of ice thickness change in the divide region of Siple Dome: a GPS surface horizontal strain network, fiber optic vertical strain measurements at depth, and precision GPS measurements of vertical motion of near-surface ice ("coffee-can" method). From the horizontal strain network, we calculate the divergence of the horizontal velocity. This divergence is equal to the gradient of vertical velocity at the surface and, with some assumptions about the distribution of strain rates with depth, we can calculate the vertical velocity at the surface. For steady state, the vertical velocity must be balanced by the local accumulation rate. The fiber optic instruments provide a profile of the relative vertical velocity with depth. We fit a theoretical vertical velocity pattern to these data and extrapolate to find the surface vertical velocity. Our third method (coffee-can) directly measures the vertical motion of a marker 20 meters deep using precision GPS and compares it with the local long-term rate of snow accumulation to calculate the net rate of ice sheet thickness change. All three methods reach the same conclusion: Siple Dome is currently very close to being in steady state. This result has two implications. First, ice dynamics models developed to interpret radar images or ice core data can assume steady state behavior, simplifying the models. Second, our result suggests that the central part of the Ross Embayment may have had a low-elevation profile during the late Holocene, even though other areas of the WAIS may have been thicker.

  8. Intensity fluctuations in steady-state superradiance

    SciTech Connect

    Meiser, D.; Holland, M. J.

    2010-06-15

    Alkaline-earth-metal-like atoms with ultranarrow optical transitions enable superradiance in steady state. The emitted light promises to have an unprecedented stability with a linewidth as narrow as a few millihertz. In order to evaluate the potential usefulness of this light source as an ultrastable oscillator in clock and precision metrology applications, it is crucial to understand the noise properties of this device. In this paper, we present a detailed analysis of the intensity fluctuations by means of Monte Carlo simulations and semiclassical approximations. We find that the light exhibits bunching below threshold, is to a good approximation coherent in the superradiant regime, and is chaotic above the second threshold.

  9. Intense steady state electron beam generator

    DOEpatents

    Hershcovitch, Ady; Kovarik, Vincent J.; Prelec, Krsto

    1990-01-01

    An intense, steady state, low emittance electron beam generator is formed by operating a hollow cathode discharge plasma source at critical levels in combination with an extraction electrode and a target electrode that are operable to extract a beam of fast primary electrons from the plasma source through a negatively biased grid that is critically operated to repel bulk electrons toward the plasma source while allowing the fast primary electrons to move toward the target in the desired beam that can be successfully transported for relatively large distances, such as one or more meters away from the plasma source.

  10. Intense steady state electron beam generator

    DOEpatents

    Hershcovitch, A.; Kovarik, V.J.; Prelec, K.

    1990-07-17

    An intense, steady state, low emittance electron beam generator is formed by operating a hollow cathode discharge plasma source at critical levels in combination with an extraction electrode and a target electrode that are operable to extract a beam of fast primary electrons from the plasma source through a negatively biased grid that is critically operated to repel bulk electrons toward the plasma source while allowing the fast primary electrons to move toward the target in the desired beam that can be successfully transported for relatively large distances, such as one or more meters away from the plasma source. 2 figs.

  11. Inhibiting cytosolic translation and autophagy improves health in mitochondrial disease.

    PubMed

    Peng, Min; Ostrovsky, Julian; Kwon, Young Joon; Polyak, Erzsebet; Licata, Joseph; Tsukikawa, Mai; Marty, Eric; Thomas, Jeffrey; Felix, Carolyn A; Xiao, Rui; Zhang, Zhe; Gasser, David L; Argon, Yair; Falk, Marni J

    2015-09-01

    Mitochondrial respiratory chain (RC) disease therapies directed at intra-mitochondrial pathology are largely ineffective. Recognizing that RC dysfunction invokes pronounced extra-mitochondrial transcriptional adaptations, particularly involving dysregulated translation, we hypothesized that translational dysregulation is itself contributing to the pathophysiology of RC disease. Here, we investigated the activities, and effects from direct inhibition, of a central translational regulator (mTORC1) and its downstream biological processes in diverse genetic and pharmacological models of RC disease. Our data identify novel mechanisms underlying the cellular pathogenesis of RC dysfunction, including the combined induction of proteotoxic stress, the ER stress response and autophagy. mTORC1 inhibition with rapamycin partially ameliorated renal disease in B6.Pdss2(kd/kd) mice with complexes I-III/II-III deficiencies, improved viability and mitochondrial physiology in gas-1(fc21) nematodes with complex I deficiency, and rescued viability across a variety of RC-inhibited human cells. Even more effective was probucol, a PPAR-activating anti-lipid drug that we show also inhibits mTORC1. However, directly inhibiting mTORC1-regulated downstream activities yielded the most pronounced and sustained benefit. Partial inhibition of translation by cycloheximide, or of autophagy by lithium chloride, rescued viability, preserved cellular respiratory capacity and induced mitochondrial translation and biogenesis. Cycloheximide also ameliorated proteotoxic stress via a uniquely selective reduction of cytosolic protein translation. RNAseq-based transcriptome profiling of treatment effects in gas-1(fc21) mutants provide further evidence that these therapies effectively restored altered translation and autophagy pathways toward that of wild-type animals. Overall, partially inhibiting cytosolic translation and autophagy offer novel treatment strategies to improve health across the diverse array

  12. Inhibiting cytosolic translation and autophagy improves health in mitochondrial disease

    PubMed Central

    Peng, Min; Ostrovsky, Julian; Kwon, Young Joon; Polyak, Erzsebet; Licata, Joseph; Tsukikawa, Mai; Marty, Eric; Thomas, Jeffrey; Felix, Carolyn A.; Xiao, Rui; Zhang, Zhe; Gasser, David L.; Argon, Yair; Falk, Marni J.

    2015-01-01

    Mitochondrial respiratory chain (RC) disease therapies directed at intra-mitochondrial pathology are largely ineffective. Recognizing that RC dysfunction invokes pronounced extra-mitochondrial transcriptional adaptations, particularly involving dysregulated translation, we hypothesized that translational dysregulation is itself contributing to the pathophysiology of RC disease. Here, we investigated the activities, and effects from direct inhibition, of a central translational regulator (mTORC1) and its downstream biological processes in diverse genetic and pharmacological models of RC disease. Our data identify novel mechanisms underlying the cellular pathogenesis of RC dysfunction, including the combined induction of proteotoxic stress, the ER stress response and autophagy. mTORC1 inhibition with rapamycin partially ameliorated renal disease in B6.Pdss2kd/kd mice with complexes I–III/II–III deficiencies, improved viability and mitochondrial physiology in gas-1(fc21) nematodes with complex I deficiency, and rescued viability across a variety of RC-inhibited human cells. Even more effective was probucol, a PPAR-activating anti-lipid drug that we show also inhibits mTORC1. However, directly inhibiting mTORC1-regulated downstream activities yielded the most pronounced and sustained benefit. Partial inhibition of translation by cycloheximide, or of autophagy by lithium chloride, rescued viability, preserved cellular respiratory capacity and induced mitochondrial translation and biogenesis. Cycloheximide also ameliorated proteotoxic stress via a uniquely selective reduction of cytosolic protein translation. RNAseq-based transcriptome profiling of treatment effects in gas-1(fc21) mutants provide further evidence that these therapies effectively restored altered translation and autophagy pathways toward that of wild-type animals. Overall, partially inhibiting cytosolic translation and autophagy offer novel treatment strategies to improve health across the diverse

  13. Steady state phreatic surfaces in sloping aquifers

    NASA Astrophysics Data System (ADS)

    LoáIciga, Hugo A.

    2005-08-01

    Steady state groundwater flow driven by constant recharge in an unconfined aquifer overlying sloping bedrock is shown to be represented, using the Dupuit approximation, by an ordinary differential equation of the Abel type y(x) · y'(x) + a · y(x) + x = 0, whose analytical solution is derived in this work. This article first investigates the case of zero saturated thickness at the upstream boundary, a flow system reminiscent of perched groundwater created by percolation of precipitation or irrigation in a sloping aquifer fully draining at its downstream boundary. A variant of this flow system occurs when the phreatic surface mounds and produces groundwater discharge toward the upstream boundary. This variant is a generalization of the classical groundwater flow problem involving two lakes connected by an aquifer, the latter being on sloping terrain in this instance. Analytical solutions for the phreatic surface's steady state geometry are derived for the case of monotonically declining hydraulic head as well as for the case of a mounded phreatic surface. These solutions are of practical interest in drainage studies, slope stability, and runoff formation investigations. It is shown that the flow factor a = -? tan β (where K, N, and tan β are the hydraulic conductivity, vertical recharge, and aquifer slope, respectively) has a commanding role on the phreatic surface's solutions. Two computational examples illustrate the implementation of this article's results.

  14. Steady state phreatic surfaces in sloping aquifers

    NASA Astrophysics Data System (ADS)

    Loáiciga, Hugo A.

    2005-08-01

    Steady state groundwater flow driven by constant recharge in an unconfined aquifer overlying sloping bedrock is shown to be represented, using the Dupuit approximation, by an ordinary differential equation of the Abel type y(x) . y'(x) + a . y(x) + x = 0, whose analytical solution is derived in this work. This article first investigates the case of zero saturated thickness at the upstream boundary, a flow system reminiscent of perched groundwater created by percolation of precipitation or irrigation in a sloping aquifer fully draining at its downstream boundary. A variant of this flow system occurs when the phreatic surface mounds and produces groundwater discharge toward the upstream boundary. This variant is a generalization of the classical groundwater flow problem involving two lakes connected by an aquifer, the latter being on sloping terrain in this instance. Analytical solutions for the phreatic surface's steady state geometry are derived for the case of monotonically declining hydraulic head as well as for the case of a mounded phreatic surface. These solutions are of practical interest in drainage studies, slope stability, and runoff formation investigations. It is shown that the flow factor a = -$\\sqrt{{\\rm K}/{\\rm N} tan β (where K, N, and tan β are the hydraulic conductivity, vertical recharge, and aquifer slope, respectively) has a commanding role on the phreatic surface's solutions. Two computational examples illustrate the implementation of this article's results.

  15. An Intuitive Approach to Steady-State Kinetics.

    ERIC Educational Resources Information Center

    Raines, Ronald T.; Hansen, David E.

    1988-01-01

    Attempts to provide an intuitive understanding of steady state kinetics. Discusses the meaning of steady state and uses free energy profiles to illustrate and follow complex kinetic and thermodynamic relationships. Provides examples with explanations. (MVL)

  16. High power steady state MPD thrusters

    NASA Astrophysics Data System (ADS)

    Auweter-Kurtz, Monika; Habiger, Harald; Kurtz, Helmut; Schrade, Herbert; Sleziona, Cristian

    1993-04-01

    At the Institut fuer Raumfahrtsysteme (IRS) rotation symmetric magnetoplasmadynamic thrusters with self induced magnetic fields are investigated at high current levels in a steady state operation mode. MPD thrusters with different geometrics were compared, and the influence of mass flow rate and power input on the operating conditions of the thrusters explored. By optical and probe measurements, a systematic investigation of the plasma plume has been started. The investigation of the various instabilities of the arc and the plasma flow appearing at high power levels was continued. The computer code development for the geometry optimization of continuous self-field MPD thrusters, running with argon, was modified by considering higher degrees of ionization, which showed better agreement with the experiment.

  17. Structural analysis of kasugamycin inhibition of translation

    PubMed Central

    Schuwirth, Barbara S; Day, J Michael; Hau, Cathy W; Janssen, Gary R; Dahlberg, Albert E; Cate, Jamie H Doudna; Vila-Sanjurjo, Antón

    2008-01-01

    The prokaryotic ribosome is an important target of antibiotic action. We determined the X-ray structure of the aminoglycoside kasugamycin (Ksg) in complex with the Escherichia coli 70S ribosome at 3.5-Å resolution. The structure reveals that the drug binds within the messenger RNA channel of the 30S subunit between the universally conserved G926 and A794 nucleotides in 16S ribosomal RNA, which are sites of Ksg resistance. To our surprise, Ksg resistance mutations do not inhibit binding of the drug to the ribosome. The present structural and biochemical results indicate that inhibition by Ksg and Ksg resistance are closely linked to the structure of the mRNA at the junction of the peptidyl-tRNA and exit-tRNA sites (P and E sites). PMID:16998486

  18. Customized Steady-State Constraints for Parameter Estimation in Non-Linear Ordinary Differential Equation Models

    PubMed Central

    Rosenblatt, Marcus; Timmer, Jens; Kaschek, Daniel

    2016-01-01

    Ordinary differential equation models have become a wide-spread approach to analyze dynamical systems and understand underlying mechanisms. Model parameters are often unknown and have to be estimated from experimental data, e.g., by maximum-likelihood estimation. In particular, models of biological systems contain a large number of parameters. To reduce the dimensionality of the parameter space, steady-state information is incorporated in the parameter estimation process. For non-linear models, analytical steady-state calculation typically leads to higher-order polynomial equations for which no closed-form solutions can be obtained. This can be circumvented by solving the steady-state equations for kinetic parameters, which results in a linear equation system with comparatively simple solutions. At the same time multiplicity of steady-state solutions is avoided, which otherwise is problematic for optimization. When solved for kinetic parameters, however, steady-state constraints tend to become negative for particular model specifications, thus, generating new types of optimization problems. Here, we present an algorithm based on graph theory that derives non-negative, analytical steady-state expressions by stepwise removal of cyclic dependencies between dynamical variables. The algorithm avoids multiple steady-state solutions by construction. We show that our method is applicable to most common classes of biochemical reaction networks containing inhibition terms, mass-action and Hill-type kinetic equations. Comparing the performance of parameter estimation for different analytical and numerical methods of incorporating steady-state information, we show that our approach is especially well-tailored to guarantee a high success rate of optimization. PMID:27243005

  19. Customized Steady-State Constraints for Parameter Estimation in Non-Linear Ordinary Differential Equation Models.

    PubMed

    Rosenblatt, Marcus; Timmer, Jens; Kaschek, Daniel

    2016-01-01

    Ordinary differential equation models have become a wide-spread approach to analyze dynamical systems and understand underlying mechanisms. Model parameters are often unknown and have to be estimated from experimental data, e.g., by maximum-likelihood estimation. In particular, models of biological systems contain a large number of parameters. To reduce the dimensionality of the parameter space, steady-state information is incorporated in the parameter estimation process. For non-linear models, analytical steady-state calculation typically leads to higher-order polynomial equations for which no closed-form solutions can be obtained. This can be circumvented by solving the steady-state equations for kinetic parameters, which results in a linear equation system with comparatively simple solutions. At the same time multiplicity of steady-state solutions is avoided, which otherwise is problematic for optimization. When solved for kinetic parameters, however, steady-state constraints tend to become negative for particular model specifications, thus, generating new types of optimization problems. Here, we present an algorithm based on graph theory that derives non-negative, analytical steady-state expressions by stepwise removal of cyclic dependencies between dynamical variables. The algorithm avoids multiple steady-state solutions by construction. We show that our method is applicable to most common classes of biochemical reaction networks containing inhibition terms, mass-action and Hill-type kinetic equations. Comparing the performance of parameter estimation for different analytical and numerical methods of incorporating steady-state information, we show that our approach is especially well-tailored to guarantee a high success rate of optimization. PMID:27243005

  20. Inconsistencies in steady-state thermodynamics

    NASA Astrophysics Data System (ADS)

    Dickman, Ronald; Motai, Ricardo

    2014-03-01

    We address the issue of extending thermodynamics to nonequilibrium steady states. Using driven stochastic lattice gases, we ask whether consistent definitions of an effective chemical potential μ, and an effective temperature Te, are possible. μ and Te are determined via coexistence, i.e., zero flux of particles and energy between the driven system and a reservoir. In the lattice gas with nearest-neighbor exclusion, temperature is not relevant, and we find that the effective chemical potential, a function of density and drive strength, satisfies the zeroth law, and correctly predicts the densities of coexisting systems. In the Katz-Lebowitz-Spohn driven lattice gas both μ and Te need to be defined. We show analytically that in this case the zeroth law is violated for Metropolis exchange rates, and determine the size of the violations numerically. The zeroth law appears to be violated for generic exchange rates. Remarkably, the system-reservoir coupling proposed by Sasa and Tasaki [J. Stat. Phys. 125, 125 (2006), 10.1007/s10955-005-9021-7] is free of inconsistencies, and the zeroth law holds. This is because the rate depends only on the state of the donor system, and is independent of that of the acceptor.

  1. Steady State Vapor Bubble in Pool Boiling.

    PubMed

    Zou, An; Chanana, Ashish; Agrawal, Amit; Wayner, Peter C; Maroo, Shalabh C

    2016-01-01

    Boiling, a dynamic and multiscale process, has been studied for several decades; however, a comprehensive understanding of the process is still lacking. The bubble ebullition cycle, which occurs over millisecond time-span, makes it extremely challenging to study near-surface interfacial characteristics of a single bubble. Here, we create a steady-state vapor bubble that can remain stable for hours in a pool of sub-cooled water using a femtosecond laser source. The stability of the bubble allows us to measure the contact-angle and perform in-situ imaging of the contact-line region and the microlayer, on hydrophilic and hydrophobic surfaces and in both degassed and regular (with dissolved air) water. The early growth stage of vapor bubble in degassed water shows a completely wetted bubble base with the microlayer, and the bubble does not depart from the surface due to reduced liquid pressure in the microlayer. Using experimental data and numerical simulations, we obtain permissible range of maximum heat transfer coefficient possible in nucleate boiling and the width of the evaporating layer in the contact-line region. This technique of creating and measuring fundamental characteristics of a stable vapor bubble will facilitate rational design of nanostructures for boiling enhancement and advance thermal management in electronics. PMID:26837464

  2. Steady State Vapor Bubble in Pool Boiling

    NASA Astrophysics Data System (ADS)

    Zou, An; Chanana, Ashish; Agrawal, Amit; Wayner, Peter C.; Maroo, Shalabh C.

    2016-02-01

    Boiling, a dynamic and multiscale process, has been studied for several decades; however, a comprehensive understanding of the process is still lacking. The bubble ebullition cycle, which occurs over millisecond time-span, makes it extremely challenging to study near-surface interfacial characteristics of a single bubble. Here, we create a steady-state vapor bubble that can remain stable for hours in a pool of sub-cooled water using a femtosecond laser source. The stability of the bubble allows us to measure the contact-angle and perform in-situ imaging of the contact-line region and the microlayer, on hydrophilic and hydrophobic surfaces and in both degassed and regular (with dissolved air) water. The early growth stage of vapor bubble in degassed water shows a completely wetted bubble base with the microlayer, and the bubble does not depart from the surface due to reduced liquid pressure in the microlayer. Using experimental data and numerical simulations, we obtain permissible range of maximum heat transfer coefficient possible in nucleate boiling and the width of the evaporating layer in the contact-line region. This technique of creating and measuring fundamental characteristics of a stable vapor bubble will facilitate rational design of nanostructures for boiling enhancement and advance thermal management in electronics.

  3. Maximal lactate steady state in Judo

    PubMed Central

    de Azevedo, Paulo Henrique Silva Marques; Pithon-Curi, Tania; Zagatto, Alessandro Moura; Oliveira, João; Perez, Sérgio

    2014-01-01

    Summary Background: the purpose of this study was to verify the validity of respiratory compensation threshold (RCT) measured during a new single judo specific incremental test (JSIT) for aerobic demand evaluation. Methods: to test the validity of the new test, the JSIT was compared with Maximal Lactate Steady State (MLSS), which is the gold standard procedure for aerobic demand measuring. Eight well-trained male competitive judo players (24.3 ± 7.9 years; height of 169.3 ± 6.7cm; fat mass of 12.7 ± 3.9%) performed a maximal incremental specific test for judo to assess the RCT and performed on 30-minute MLSS test, where both tests were performed mimicking the UchiKomi drills. Results: the intensity at RCT measured on JSIT was not significantly different compared to MLSS (p=0.40). In addition, it was observed high and significant correlation between MLSS and RCT (r=0.90, p=0.002), as well as a high agreement. Conclusions: RCT measured during JSIT is a valid procedure to measure the aerobic demand, respecting the ecological validity of Judo. PMID:25332923

  4. Steady State Vapor Bubble in Pool Boiling

    PubMed Central

    Zou, An; Chanana, Ashish; Agrawal, Amit; Wayner, Peter C.; Maroo, Shalabh C.

    2016-01-01

    Boiling, a dynamic and multiscale process, has been studied for several decades; however, a comprehensive understanding of the process is still lacking. The bubble ebullition cycle, which occurs over millisecond time-span, makes it extremely challenging to study near-surface interfacial characteristics of a single bubble. Here, we create a steady-state vapor bubble that can remain stable for hours in a pool of sub-cooled water using a femtosecond laser source. The stability of the bubble allows us to measure the contact-angle and perform in-situ imaging of the contact-line region and the microlayer, on hydrophilic and hydrophobic surfaces and in both degassed and regular (with dissolved air) water. The early growth stage of vapor bubble in degassed water shows a completely wetted bubble base with the microlayer, and the bubble does not depart from the surface due to reduced liquid pressure in the microlayer. Using experimental data and numerical simulations, we obtain permissible range of maximum heat transfer coefficient possible in nucleate boiling and the width of the evaporating layer in the contact-line region. This technique of creating and measuring fundamental characteristics of a stable vapor bubble will facilitate rational design of nanostructures for boiling enhancement and advance thermal management in electronics. PMID:26837464

  5. Steady state volcanism - Evidence from eruption histories of polygenetic volcanoes

    NASA Technical Reports Server (NTRS)

    Wadge, G.

    1982-01-01

    Cumulative volcano volume curves are presented as evidence for steady-state behavior at certain volcanoes and to develop a model of steady-state volcanism. A minimum criteria of five eruptions over a year was chosen to characterize a steady-state volcano. The subsequent model features a constant head of magmatic pressure from a reservoir supplied from depth, a sawtooth curve produced by the magma arrivals or discharge from the subvolcanic reservoir, large volume eruptions with long repose periods, and conditions of nonsupply of magma. The behavior of Mts. Etna, Nyamuragira, and Kilauea are described and show continuous levels of plasma output resulting in cumulative volume increases. Further discussion is made of steady-state andesitic and dacitic volcanism, long term patterns of the steady state, and magma storage, and the lack of a sufficient number of steady-state volcanoes in the world is taken as evidence that further data is required for a comprehensive model.

  6. CA_OPPUSST - Cantera OPUS Steady State

    Energy Science and Technology Software Center (ESTSC)

    2005-03-01

    The Cantera Opus Steady State (ca-opusst) applications solves steady reacting flow problems in opposed-flow geometries. It is a 1-0 application that represents axisymmetnc 3-0 physical systems that can be reduced via a similarity transformation to a 1-0 mathematical representation. The code contain solutions of the general dynamic equations for the particle distribution functions using a sectional model to describe the particle distribution function. Operators for particle nucleation, coagulation, condensation (i.e., growth/etching via reactions with themore » gas ambient), internal particle reactions. particle transport due to convection and due to molecular transport, are included in the particle general dynamics equation. Heat transport due to radiation exchange of the environment with particles in local thermal equilibrium to the surrounding gas will be included in the enthalpy conservation equation that is solved for the coupled gas! particle system in an upcoming version of the code due in June 2005. The codes use Cantera , a C++ Cal Tech code, for determination of gas phase species transport, reaction, and thermodynamics physical properties and source terms. The Codes use the Cantera Aerosol Dynamics Simulator (CADS) package, a general library for aerosol modeling, to calculate properties and source terms for the aerosol general dynamics equation, including particle formation from gas phase reactions, particle surface chemistry (growth and oxidation), bulk particle chemistry, particle transport by Brownian diffusion, thermophoresis, and diffusiophoresis, and thermal radiative transport involving particles. Also included are post-processing programs, cajost and cajrof, to extract ascii data from binary output files to produce plots.« less

  7. Inhibition of insulin synthesis by cyproheptadine: effects on translation.

    PubMed

    Hawkins, Belinda S; Fischer, Lawrence J

    2004-06-01

    The antihistaminic, antiserotonergic drug cyproheptadine (CPH) is known to inhibit insulin synthesis in vivo and in vitro. This inhibition of insulin synthesis occurs without a commensurate decrease in preproinsulin mRNA (PPImRNA) levels, suggesting a post-transcriptional mechanism of action. The goal of the present study was to investigate the direct effects of CPH on translation of PPImRNA in RINm5F cells. Results produced using a subcellular fractionation technique followed by real-time RT-PCR indicated that a 2-h 10 microM CPH treatment resulted in a decrease in the percentage of cellular PPImRNA associated with endoplasmic reticulum (ER) bound polysomes and increases in the percentages of translationally uninitiated and monoribosome-associated PPImRNA. These alterations in PPImRNA distribution were found to be concentration-dependent, chemical structure-specific, and reversible with a time course consistent with a previously reported CPH-induced inhibition of insulin synthesis. Further investigations to examine the possible effect of CPH on translation initiation were then undertaken by examining the phosphorylation state of the translation initiation factors eIF2alpha, eIF4E, and 4E-BP1 after CPH treatment. CPH (10 microM) treatment resulted in increased phosphorylation of eIF2alpha, and decreased phosphorylation of both eIF4E and 4E-BP1. These changes are all consistent with decreased initiation of translation. Taken together, these results suggest that the inhibition of insulin synthesis known to be elicited by CPH treatment of RINm5F cells and intact animals involves alterations of initiation factor phosphorylation leading to a decrease in insulin synthesis and of stored insulin in insulin-producing cells. PMID:15056814

  8. Defining Features of Steady-State Timbres

    NASA Astrophysics Data System (ADS)

    Hall, Michael D.

    1995-01-01

    Three experiments were conducted to define steady -state features of timbre for a group of well-trained musicians. Experiment 1 evaluated whether or not pairs of three critical dimensions of timbre--spectral slope (6 or 12 dB/octave), formant structure (/a/ or /i/ vowel), and inharmonicity of partials (harmonic or inharmonic)--were processed in a separable or integral fashion. Accuracy and speed for classification of values along one dimension were examined under different conditions of variability along a second dimension (fixed, correlated, or orthogonal). Spectral slope and formant structure were integral, with classification speed for the target dimension depending upon variability along the orthogonal dimension. In contrast, evidence of asymmetric separability was obtained for inharmonicity. Classification speed for slope and formant structure did not depend on inharmonicity, whereas RT for the target dimension of inharmonicity was strongly influenced by variability along either slope or formant structure. Since the results of Experiment 1 provided a basis for manipulating spectral slope and formant structure as a single feature, these dimensions were correlated in Experiment 2. Subjects searched for targets containing potential features of timbre within arrays of 1-4 inharmonic distractor pitches. Distractors were homogeneous with respect to the dimensions of timbre. When targets had /a/ formants with shallow spectral slopes, search time increased nonlinearly with array size in a manner consistent with the parallel processing of items, and thus feature search. Feature search was not obtained for targets with /i/ formants and steep slopes. Thus, the feature was coded as the presence or absence of /a/ formants with shallow spectral slopes. A search task using heterogeneous distractor values along slope/formant structure was used in Experiment 3 to evaluate whether or not the feature of timbre and pitch were automatically conjoined (integral). Search times for

  9. Steady-state analysis of activated sludge processes with a settler model including sludge compression.

    PubMed

    Diehl, S; Zambrano, J; Carlsson, B

    2016-01-01

    A reduced model of a completely stirred-tank bioreactor coupled to a settling tank with recycle is analyzed in its steady states. In the reactor, the concentrations of one dominant particulate biomass and one soluble substrate component are modelled. While the biomass decay rate is assumed to be constant, growth kinetics can depend on both substrate and biomass concentrations, and optionally model substrate inhibition. Compressive and hindered settling phenomena are included using the Bürger-Diehl settler model, which consists of a partial differential equation. Steady-state solutions of this partial differential equation are obtained from an ordinary differential equation, making steady-state analysis of the entire plant difficult. A key result showing that the ordinary differential equation can be replaced with an approximate algebraic equation simplifies model analysis. This algebraic equation takes the location of the sludge-blanket during normal operation into account, allowing for the limiting flux capacity caused by compressive settling to easily be included in the steady-state mass balance equations for the entire plant system. This novel approach grants the possibility of more realistic solutions than other previously published reduced models, comprised of yet simpler settler assumptions. The steady-state concentrations, solids residence time, and the wastage flow ratio are functions of the recycle ratio. Solutions are shown for various growth kinetics; with different values of biomass decay rate, influent volumetric flow, and substrate concentration. PMID:26476681

  10. The steady-state assumption in oscillating and growing systems.

    PubMed

    Reimers, Alexandra-M; Reimers, Arne C

    2016-10-01

    The steady-state assumption, which states that the production and consumption of metabolites inside the cell are balanced, is one of the key aspects that makes an efficient analysis of genome-scale metabolic networks possible. It can be motivated from two different perspectives. In the time-scales perspective, we use the fact that metabolism is much faster than other cellular processes such as gene expression. Hence, the steady-state assumption is derived as a quasi-steady-state approximation of the metabolism that adapts to the changing cellular conditions. In this article we focus on the second perspective, stating that on the long run no metabolite can accumulate or deplete. In contrast to the first perspective it is not immediately clear how this perspective can be captured mathematically and what assumptions are required to obtain the steady-state condition. By presenting a mathematical framework based on the second perspective we demonstrate that the assumption of steady-state also applies to oscillating and growing systems without requiring quasi-steady-state at any time point. However, we also show that the average concentrations may not be compatible with the average fluxes. In summary, we establish a mathematical foundation for the steady-state assumption for long time periods that justifies its successful use in many applications. Furthermore, this mathematical foundation also pinpoints unintuitive effects in the integration of metabolite concentrations using nonlinear constraints into steady-state models for long time periods. PMID:27363728

  11. Cotranslational Coat Protein-Mediated Inhibition of Potyviral RNA Translation

    PubMed Central

    Besong-Ndika, Jane; Ivanov, Konstantin I.; Hafrèn, Anders; Michon, Thierry

    2015-01-01

    ABSTRACT Potato virus A (PVA) is a single-stranded positive-sense RNA virus and a member of the family Potyviridae. The PVA coat protein (CP) has an intrinsic capacity to self-assemble into filamentous virus-like particles, but the mechanism responsible for the initiation of viral RNA encapsidation in vivo remains unclear. Apart from virion assembly, PVA CP is also involved in the inhibition of viral RNA translation. In this study, we show that CP inhibits PVA RNA translation in a dose-dependent manner, through a mechanism involving the CP-encoding region. Analysis of this region, however, failed to identify any RNA secondary structure(s) preferentially recognized by CP, suggesting that the inhibition depends on CP-CP rather than CP-RNA interactions. In agreement with this possibility, insertion of an in-frame stop codon upstream of the CP sequence led to a marked decrease in the inhibition of viral RNA translation. Based on these results, we propose a model in which the cotranslational interactions between excess CP accumulating in trans and CP translated from viral RNA in cis are required to initiate the translational repression. This model suggests a mechanism for how viral RNA can be sequestered from translation and specifically selected for encapsidation at the late stages of viral infection. IMPORTANCE The main functions of the CP during potyvirus infection are to protect viral RNA from degradation and to transport it locally, systemically, and from host to host. Although virion assembly is a key step in the potyviral infectious cycle, little is known about how it is initiated and how viral RNA is selected for encapsidation. The results presented here suggest that CP-CP rather than CP-RNA interactions are predominantly involved in the sequestration of viral RNA away from translation. We propose that the cotranslational nature of these interactions may represent a mechanism for the selection of viral RNA for encapsidation. A better understanding of the

  12. Steady states and stability in metabolic networks without regulation.

    PubMed

    Ivanov, Oleksandr; van der Schaft, Arjan; Weissing, Franz J

    2016-07-21

    Metabolic networks are often extremely complex. Despite intensive efforts many details of these networks, e.g., exact kinetic rates and parameters of metabolic reactions, are not known, making it difficult to derive their properties. Considerable effort has been made to develop theory about properties of steady states in metabolic networks that are valid for any values of parameters. General results on uniqueness of steady states and their stability have been derived with specific assumptions on reaction kinetics, stoichiometry and network topology. For example, deep results have been obtained under the assumptions of mass-action reaction kinetics, continuous flow stirred tank reactors (CFSTR), concordant reaction networks and others. Nevertheless, a general theory about properties of steady states in metabolic networks is still missing. Here we make a step further in the quest for such a theory. Specifically, we study properties of steady states in metabolic networks with monotonic kinetics in relation to their stoichiometry (simple and general) and the number of metabolites participating in every reaction (single or many). Our approach is based on the investigation of properties of the Jacobian matrix. We show that stoichiometry, network topology, and the number of metabolites that participate in every reaction have a large influence on the number of steady states and their stability in metabolic networks. Specifically, metabolic networks with single-substrate-single-product reactions have disconnected steady states, whereas in metabolic networks with multiple-substrates-multiple-product reactions manifolds of steady states arise. Metabolic networks with simple stoichiometry have either a unique globally asymptotically stable steady state or asymptotically stable manifolds of steady states. In metabolic networks with general stoichiometry the steady states are not always stable and we provide conditions for their stability. In order to demonstrate the biological

  13. Steady State Growth of Continental Crust?

    NASA Astrophysics Data System (ADS)

    Bowring, S. A.; Bauer, A.; Dudas, F. O.; Schoene, B.; McLean, N. M.

    2012-12-01

    any age. If one accepts that the probability of preserving old crust decreases with increasing age, the few exposures of rocks older than 3.5 Ga should not be surprising. The thickness and compositional differences between Archean and younger lithospheric mantle are not fully understood nor is the role of thicker buoyant mantle in preserving continental crust; these lead to the question of whether the preserved rock record is representative of what formed. It is notable that the oldest known rocks, the ca. 4.0 Ga Acasta Gneisses, are tonalities-granodiorites-granites with evidence for the involvement of even older crust and that the oldest detrital zircons from Australia (ca. 4.0-4.4 Ga) are thought to have been derived from granitoid sources. The global Hf and Nd isotope databases are compatible with both depleted and enriched sources being present from at least 4.0 Ga to the present and that the lack of evolution of the MORB source or depleted mantle is due to recycling of continental crust throughout earth history. Using examples from the Slave Province and southern Africa, we argue that Armstrong's concept of steady state crustal growth and recycling via plate tectonics still best explains the modern geological and geochemical data.

  14. Steady-state solidification of aqueous ammonium chloride

    NASA Astrophysics Data System (ADS)

    Peppin, S. S. L.; Huppert, Herbert E.; Worster, M. Grae

    We report on a series of experiments in which a Hele-Shaw cell containing aqueous solutions of NH4Cl was translated at prescribed rates through a steady temperature gradient. The salt formed the primary solid phase of a mushy layer as the solution solidified, with the salt-depleted residual fluid driving buoyancy-driven convection and the development of chimneys in the mushy layer. Depending on the operating conditions, several morphological transitions occurred. A regime diagram is presented quantifying these transitions as a function of freezing rate and the initial concentration of the solution. In general, for a given concentration, increasing the freezing rate caused the steady-state system to change from a convecting mushy layer with chimneys to a non-convecting mushy layer below a relatively quiescent liquid, and then to a much thinner mushy layer separated from the liquid by a region of active secondary nucleation. At higher initial concentrations the second of these states did not occur. At lower concentrations, but still above the eutectic, the mushy layer disappeared. A simple mathematical model of the system is developed which compares well with the experimental measurements of the intermediate, non-convecting state and serves as a benchmark against which to understand some of the effects of convection. Movies are available with the online version of the paper.

  15. Measurement of non-steady-state free fatty acid turnover

    SciTech Connect

    Jensen, M.D.; Heiling, V.; Miles, J.M. )

    1990-01-01

    The accuracy of non-steady-state equations for measuring changes in free fatty acid rate of appearance (Ra) is unknown. In the present study, endogenous lipolysis (traced with ({sup 14}C)-linoleate) was pharmacologically suppressed in six conscious mongrel dogs. A computer-responsive infusion pump was then used to deliver an intravenous oleic acid emulsion in both constant and linear gradient infusion modes. Both non-steady-state equations with various effective volumes of distribution (V) and steady-state equations were used to measure oleate Ra (({sup 14}C)oleate). Endogenous lipolysis did not change during the experiment. When oleate Ra increased in a linear gradient fashion, only non-steady-state equations with a large (150 ml/kg) V resulted in erroneous values (9% overestimate, P less than 0.05). In contrast, when oleate Ra decreased in a similar fashion, steady-state and standard non-steady-state equations (V = plasma volume = 50 ml/kg) overestimated total oleate Ra (18 and 7%, P less than 0.001 and P less than 0.05, respectively). Overall, non-steady-state equations with an effective V of 90 ml/kg (1.8 x plasma volume) allowed the most accurate estimates of oleate Ra.

  16. Steady-state decoupling and design of linear multivariable systems

    NASA Technical Reports Server (NTRS)

    Thaler, G. J.

    1974-01-01

    A constructive criterion for decoupling the steady states of a linear time-invariant multivariable system is presented. This criterion consists of a set of inequalities which, when satisfied, will cause the steady states of a system to be decoupled. Stability analysis and a new design technique for such systems are given. A new and simple connection between single-loop and multivariable cases is found. These results are then applied to the compensation design for NASA STOL C-8A aircraft. Both steady-state decoupling and stability are justified through computer simulations.

  17. A Note on Equations for Steady-State Optimal Landscapes

    SciTech Connect

    Liu, H.H.

    2010-06-15

    Based on the optimality principle (that the global energy expenditure rate is at its minimum for a given landscape under steady state conditions) and calculus of variations, we have derived a group of partial differential equations for describing steady-state optimal landscapes without explicitly distinguishing between hillslopes and channel networks. Other than building on the well-established Mining's equation, this work does not rely on any empirical relationships (such as those relating hydraulic parameters to local slopes). Using additional constraints, we also theoretically demonstrate that steady-state water depth is a power function of local slope, which is consistent with field data.

  18. Autonomous quantum thermal machine for generating steady-state entanglement

    NASA Astrophysics Data System (ADS)

    Bohr Brask, Jonatan; Haack, Géraldine; Brunner, Nicolas; Huber, Marcus

    2015-11-01

    We discuss a simple quantum thermal machine for the generation of steady-state entanglement between two interacting qubits. The machine is autonomous in the sense that it uses only incoherent interactions with thermal baths, but no source of coherence or external control. By weakly coupling the qubits to thermal baths at different temperatures, inducing a heat current through the system, steady-state entanglement is generated far from thermal equilibrium. Finally, we discuss two possible implementations, using superconducting flux qubits or a semiconductor double quantum dot. Experimental prospects for steady-state entanglement are promising in both systems.

  19. Einstein's steady-state theory: an abandoned model of the cosmos

    NASA Astrophysics Data System (ADS)

    O'Raifeartaigh, Cormac; McCann, Brendan; Nahm, Werner; Mitton, Simon

    2014-09-01

    We present a translation and analysis of an unpublished manuscript by Albert Einstein in which he attempted to construct a `steady-state' model of the universe. The manuscript, which appears to have been written in early 1931, demonstrates that Einstein once explored a cosmic model in which the mean density of matter in an expanding universe is maintained constant by the continuous formation of matter from empty space. This model is very different to previously known Einsteinian models of the cosmos (both static and dynamic) but anticipates the later steady-state cosmology of Hoyle, Bondi and Gold in some ways. We find that Einstein's steady-state model contains a fundamental flaw and suggest that it was abandoned for this reason. We also suggest that he declined to explore a more sophisticated version because he found such theories rather contrived. The manuscript is of historical interest because it reveals that Einstein debated between steady-state and evolving models of the cosmos decades before a similar debate took place in the cosmological community.

  20. Characterizing the Relationship between Steady State and Response Using Analytical Expressions for the Steady States of Mass Action Models

    PubMed Central

    Loriaux, Paul Michael; Tesler, Glenn; Hoffmann, Alexander

    2013-01-01

    The steady states of cells affect their response to perturbation. Indeed, diagnostic markers for predicting the response to therapeutic perturbation are often based on steady state measurements. In spite of this, no method exists to systematically characterize the relationship between steady state and response. Mathematical models are established tools for studying cellular responses, but characterizing their relationship to the steady state requires that it have a parametric, or analytical, expression. For some models, this expression can be derived by the King-Altman method. However, King-Altman requires that no substrate act as an enzyme, and is therefore not applicable to most models of signal transduction. For this reason we developed py-substitution, a simple but general method for deriving analytical expressions for the steady states of mass action models. Where the King-Altman method is applicable, we show that py-substitution yields an equivalent expression, and at comparable efficiency. We use py-substitution to study the relationship between steady state and sensitivity to the anti-cancer drug candidate, dulanermin (recombinant human TRAIL). First, we use py-substitution to derive an analytical expression for the steady state of a published model of TRAIL-induced apoptosis. Next, we show that the amount of TRAIL required for cell death is sensitive to the steady state concentrations of procaspase 8 and its negative regulator, Bar, but not the other procaspase molecules. This suggests that activation of caspase 8 is a critical point in the death decision process. Finally, we show that changes in the threshold at which TRAIL results in cell death is not always equivalent to changes in the time of death, as is commonly assumed. Our work demonstrates that an analytical expression is a powerful tool for identifying steady state determinants of the cellular response to perturbation. All code is available at http://signalingsystems.ucsd.edu/models-and-code/ or

  1. An Operational Definition of the Steady State in Enzyme Kinetics.

    ERIC Educational Resources Information Center

    Barnsley, E. A.

    1990-01-01

    The Briggs-Haldane assumption is used as the basis for the development of a kinetic model for enzyme catalysis. An alternative definition of the steady state and examples of realistic mechanisms are provided. (KR)

  2. Phencyclidine Disrupts the Auditory Steady State Response in Rats

    PubMed Central

    Leishman, Emma; O’Donnell, Brian F.; Millward, James B.; Vohs, Jenifer L.; Rass, Olga; Krishnan, Giri P.; Bolbecker, Amanda R.; Morzorati, Sandra L.

    2015-01-01

    The Auditory Steady-State Response (ASSR) in the electroencephalogram (EEG) is usually reduced in schizophrenia (SZ), particularly to 40 Hz stimulation. The gamma frequency ASSR deficit has been attributed to N-methyl-D-aspartate receptor (NMDAR) hypofunction. We tested whether the NMDAR antagonist, phencyclidine (PCP), produced similar ASSR deficits in rats. EEG was recorded from awake rats via intracranial electrodes overlaying the auditory cortex and at the vertex of the skull. ASSRs to click trains were recorded at 10, 20, 30, 40, 50, and 55 Hz and measured by ASSR Mean Power (MP) and Phase Locking Factor (PLF). In Experiment 1, the effect of different subcutaneous doses of PCP (1.0, 2.5 and 4.0 mg/kg) on the ASSR in 12 rats was assessed. In Experiment 2, ASSRs were compared in PCP treated rats and control rats at baseline, after acute injection (5 mg/kg), following two weeks of subchronic, continuous administration (5 mg/kg/day), and one week after drug cessation. Acute administration of PCP increased PLF and MP at frequencies of stimulation below 50 Hz, and decreased responses at higher frequencies at the auditory cortex site. Acute administration had a less pronounced effect at the vertex site, with a reduction of either PLF or MP observed at frequencies above 20 Hz. Acute effects increased in magnitude with higher doses of PCP. Consistent effects were not observed after subchronic PCP administration. These data indicate that acute administration of PCP, a NMDAR antagonist, produces an increase in ASSR synchrony and power at low frequencies of stimulation and a reduction of high frequency (> 40 Hz) ASSR activity in rats. Subchronic, continuous administration of PCP, on the other hand, has little impact on ASSRs. Thus, while ASSRs are highly sensitive to NMDAR antagonists, their translational utility as a cross-species biomarker for NMDAR hypofunction in SZ and other disorders may be dependent on dose and schedule. PMID:26258486

  3. On the time to steady state: insights from numerical modeling

    NASA Astrophysics Data System (ADS)

    Goren, L.; Willett, S.; McCoy, S. W.; Perron, J.

    2013-12-01

    How fast do fluvial landscapes approach steady state after an application of tectonic or climatic perturbation? While theory and some numerical models predict that the celerity of the advective wave (knickpoint) controls the response time for perturbations, experiments and other landscape evolution models demonstrate that the time to steady state is much longer than the theoretically predicted response time. We posit that the longevity of transient features and the time to steady state are controlled by the stability of the topology and geometry of channel networks. Evolution of a channel network occurs by a combination of discrete capture events and continuous migration of water divides, processes, which are difficult to represent accurately in landscape evolution models. We therefore address the question of the time to steady state using the DAC landscape evolution model that solves accurately for the location of water divides, using a combination of analytical solution for hillslopes and low-order channels together with a numerical solution for higher order channels. DAC also includes an explicit capture criterion. We have tested fundamental predictions from DAC and show that modeled networks reproduce natural network characteristics such as the Hack's exponent and coefficient and the fractal dimension. We define two steady-state criteria: a topographic steady state, defined by global, pointwise steady elevation, and a topological steady state defined as the state in which no further reorganization of the drainage network takes place. Analyzing block uplift simulations, we find that the time to achieve either topographic or topological steady state exceeds by an order of magnitude the theoretical response time of the fluvial network. The longevity of the transient state is the result of the area feedback, by which, migration of a divide changes the local contributing area. This change propagates downstream as a slope adjustment, forcing further divide migrations

  4. Multiple steady states in coupled flow tank reactors

    NASA Astrophysics Data System (ADS)

    Hunt, Katharine L. C.; Kottalam, J.; Hatlee, Michael D.; Ross, John

    1992-05-01

    Coupling between continuous-flow, stirred tank reactors (CSTR's), each having multiple steady states, can produce new steady states with different concentrations of the chemical species in each of the coupled tanks. In this work, we identify a kinetic potential ψ that governs the deterministic time evolution of coupled tank reactors, when the reaction mechanism permits a single-variable description of the states of the individual tanks; examples include the iodate-arsenous acid reaction, a cubic model suggested by Noyes, and two quintic models. Stable steady states correspond to minima of ψ, and unstable steady states to maxima or saddle points; marginally stable states typically correspond to saddle-node points. We illustrate the variation in ψ due to changes in the rate constant for external material intake (k0) and for exchange between tanks (kx). For fixed k0 values, we analyze the changes in numbers and types of steady states as kx increases from zero. We show that steady states disappear by pairwise coalescence; we also show that new steady states may appear with increasing kx, when the reaction mechanism is sufficiently complex. For fixed initial conditions, the steady state ultimately reached in a mixing experiment may depend on the exchange rate constant as a function of time, kx(t) : Adiabatic mixing is obtained in the limit of slow changes in kx(t) and instantaneous mixing in the limit as kx(t)→∞ while t remains small. Analyses based on the potential ψ predict the outcome of mixing experiments for arbitrary kx(t). We show by explicit counterexamples that a prior theory developed by Noyes does not correctly predict the instability points or the transitions between steady states of coupled tanks, to be expected in mixing experiments. We further show that the outcome of such experiments is not connected to the relative stability of steady states in individual tank reactors. We find that coupling may effectively stabilize the tanks. We provide

  5. Steady state in a gas of inelastic rough spheres heated by a uniform stochastic force

    NASA Astrophysics Data System (ADS)

    Vega Reyes, Francisco; Santos, Andrés

    2015-11-01

    We study here the steady state attained in a granular gas of inelastic rough spheres that is subject to a spatially uniform random volume force. The stochastic force has the form of the so-called white noise and acts by adding impulse to the particle translational velocities. We work out an analytical solution of the corresponding velocity distribution function from a Sonine polynomial expansion that displays energy non-equipartition between the translational and rotational modes, translational and rotational kurtoses, and translational-rotational velocity correlations. By comparison with a numerical solution of the Boltzmann kinetic equation (by means of the direct simulation Monte Carlo method), we show that our analytical solution provides a good description that is quantitatively very accurate in certain ranges of inelasticity and roughness. We also find three important features that make the forced granular gas steady state very different from the homogeneous cooling state (attained by an unforced granular gas). First, the marginal velocity distributions are always close to a Maxwellian. Second, there is a continuous transition to the purely smooth limit (where the effects of particle rotations are ignored). And third, the angular translational-rotational velocity correlations show a preference for a quasiperpendicular mutual orientation (which is called "lifted-tennis-ball" behavior).

  6. Steady state in a gas of inelastic rough spheres heated by a uniform stochastic force

    SciTech Connect

    Vega Reyes, Francisco Santos, Andrés

    2015-11-15

    We study here the steady state attained in a granular gas of inelastic rough spheres that is subject to a spatially uniform random volume force. The stochastic force has the form of the so-called white noise and acts by adding impulse to the particle translational velocities. We work out an analytical solution of the corresponding velocity distribution function from a Sonine polynomial expansion that displays energy non-equipartition between the translational and rotational modes, translational and rotational kurtoses, and translational-rotational velocity correlations. By comparison with a numerical solution of the Boltzmann kinetic equation (by means of the direct simulation Monte Carlo method), we show that our analytical solution provides a good description that is quantitatively very accurate in certain ranges of inelasticity and roughness. We also find three important features that make the forced granular gas steady state very different from the homogeneous cooling state (attained by an unforced granular gas). First, the marginal velocity distributions are always close to a Maxwellian. Second, there is a continuous transition to the purely smooth limit (where the effects of particle rotations are ignored). And third, the angular translational-rotational velocity correlations show a preference for a quasiperpendicular mutual orientation (which is called “lifted-tennis-ball” behavior)

  7. Evaluation of a steady state MPD thruster test facility

    SciTech Connect

    Reed, C.B.; Carlson, L.W.; Herman, H.; Doss, E.D.; Kilgore, O.

    1985-01-01

    The successful development of multimegawatt MPD thrusters depends, to a great extent, on testing them under steady state high altitude space conditions. Steady state testing is required to provide thermal characteristics, life cycle, erosion, and other essential data. the major technical obstacle for ground testing of MPD thrusters in a space simulation facility is the inability of state-of-the-art vacuum systems to handle the tremendous pumping speeds required for multimegawatt MPD thrusters. This is true for other types of electric propulsion devices as well. This paper discusses the results of the first phase of an evaluation of steady state MPD thruster test facilities. The first phase addresses the conceptual design of vacuum systems required to support multimegawatt MPD thruster testing. Three advanced pumping system concepts were evaluated and are presented here.

  8. Poissonian steady states: From stationary densities to stationary intensities

    NASA Astrophysics Data System (ADS)

    Eliazar, Iddo

    2012-10-01

    Markov dynamics are the most elemental and omnipresent form of stochastic dynamics in the sciences, with applications ranging from physics to chemistry, from biology to evolution, and from economics to finance. Markov dynamics can be either stationary or nonstationary. Stationary Markov dynamics represent statistical steady states and are quantified by stationary densities. In this paper, we generalize the notion of steady state to the case of general Markov dynamics. Considering an ensemble of independent motions governed by common Markov dynamics, we establish that the entire ensemble attains Poissonian steady states which are quantified by stationary Poissonian intensities and which hold valid also in the case of nonstationary Markov dynamics. The methodology is applied to a host of Markov dynamics, including Brownian motion, birth-death processes, random walks, geometric random walks, renewal processes, growth-collapse dynamics, decay-surge dynamics, Ito diffusions, and Langevin dynamics.

  9. From Steady-State To Cyclic Metal Forming Processes

    NASA Astrophysics Data System (ADS)

    Montmitonnet, Pierre

    2007-05-01

    Continuous processes often exhibit a high proportion of steady state, and have been modeled with steady-state formulations for thirty years, resulting in very CPU-time efficient computations. On the other hand, incremental forming processes generally remain a challenge for FEM software, because of the local nature of deformation compared with the size of the part to be formed, and of the large number of deformation steps needed. Among them however, certain semi-continuous metal forming processes can be characterized as periodic, or cyclic. In this case, an efficient computational strategy can be derived from the ideas behind the steady-state models. This will be illustrated with the example of pilgering, a seamless tube cold rolling process.

  10. Hydrogen peroxide (H2O2) increases the steady-state mRNA levels of collagenase/MMP-1 in human dermal fibroblasts.

    PubMed

    Brenneisen, P; Briviba, K; Wlaschek, M; Wenk, J; Scharffetter-Kochanek, K

    1997-01-01

    Reactive oxygen species (ROS) have been shown to be important messenger molecules in the induction of several genes. In human dermal fibroblasts the herbicide paraquat (PQ2+) was used to induce intracellular oxidative stress that was modulated by the inhibition of copper, zinc superoxide dismutase (Cu,ZnSOD), glutathione peroxidase (GSHPx), catalase, and blocking of the Fenton reaction. Interstitial collagenase (MMP-1) mRNA increased time dependently for up to 72 h following paraquat treatment. A correlation with the translation of MMP-1 could, however, only be detected up to 24 h, indicating an uncoupling of transcription and translation. Interleukin-1 alpha and beta mRNA showed two peaks at 6 h and 72 h. The inhibition of catalase by aminotriazol (ATZ), inhibition of GSHPx by buthionine sulfoximine (BSO), and blocking the Fenton reaction by the iron chelator desferrioxamine (DFO) in concert led to an increase in steady-state MMP-1 mRNA levels, possibly dependent on intracellular H2O2 increase. This combined treatment potentiated MMP-1 mRNA induction up to 6.5-fold compared to paraquat treated controls. Furthermore, exogenously added H2O2 caused an increase in MMP-1 mRNA levels. In contrast, inhibition of Cu,ZnSOD by diethyldithiocarbamate (DDC), leading to diminished H2O2 production from O2.-, decreased MMP-1 mRNA induction. Collectively, our data provide evidence that H2O2 is an important intermediate in the downstream signalling pathway finally leading to the induction of increased steady state MMP-1 mRNA levels. The synthesis of MMPs may contribute to connective tissue damage in vivo related to photoaging, inflammatory diseases, and tumor invasion. PMID:8981044

  11. 40 Hz Auditory Steady-State Response Is a Pharmacodynamic Biomarker for Cortical NMDA Receptors.

    PubMed

    Sivarao, Digavalli V; Chen, Ping; Senapati, Arun; Yang, Yili; Fernandes, Alda; Benitex, Yulia; Whiterock, Valerie; Li, Yu-Wen; Ahlijanian, Michael K

    2016-08-01

    Schizophrenia patients exhibit dysfunctional gamma oscillations in response to simple auditory stimuli or more complex cognitive tasks, a phenomenon explained by reduced NMDA transmission within inhibitory/excitatory cortical networks. Indeed, a simple steady-state auditory click stimulation paradigm at gamma frequency (~40 Hz) has been reproducibly shown to reduce entrainment as measured by electroencephalography (EEG) in patients. However, some investigators have reported increased phase locking factor (PLF) and power in response to 40 Hz auditory stimulus in patients. Interestingly, preclinical literature also reflects this contradiction. We investigated whether a graded deficiency in NMDA transmission can account for such disparate findings by administering subanesthetic ketamine (1-30 mg/kg, i.v.) or vehicle to conscious rats (n=12) and testing their EEG entrainment to 40 Hz click stimuli at various time points (~7-62 min after treatment). In separate cohorts, we examined in vivo NMDA channel occupancy and tissue exposure to contextualize ketamine effects. We report a robust inverse relationship between PLF and NMDA occupancy 7 min after dosing. Moreover, ketamine could produce inhibition or disinhibition of the 40 Hz response in a temporally dynamic manner. These results provide for the first time empirical data to understand how cortical NMDA transmission deficit may lead to opposite modulation of the auditory steady-state response (ASSR). Importantly, our findings posit that 40 Hz ASSR is a pharmacodynamic biomarker for cortical NMDA function that is also robustly translatable. Besides schizophrenia, such a functional biomarker may be of value to neuropsychiatric disorders like bipolar and autism spectrum where 40 Hz ASSR deficits have been documented. PMID:26837462

  12. Steady-state CO/sub 2/ laser model

    SciTech Connect

    Scott, M.W.; Myers, G.D.

    1984-09-01

    A steady-state CO/sub 2/ lase model is reported which can be used to predict and evaluate the performance of cw slow-flow and no-flow CO/sub 2/ lasers. Traditional CO/sub 2/ laser models require the solution of several simultaneous differential equations and can be used to model pulsed and fast-flow lasers in addition to cw and slow-flow devices. The model reported here is computationally simpler, requiring only a routine to solve one equation in one unknown, but is only useful for lasers which operate in the steady state.

  13. Steady state decoupling and design of linear multivariable systems

    NASA Technical Reports Server (NTRS)

    Huang, J. Y.; Thaler, G. J.

    1974-01-01

    A constructive criterion for decoupling the steady states of linear multivariable systems is developed. The criterion consists of n(n-1) inequalities with the type numbers of the compensator transfer functions as the unknowns. These unknowns can be chosen to satisfy the inequalities and hence achieve a steady state decoupling scheme. It turns out that pure integrators in the loops play an important role. An extended root locus design method is then developed to take care of the stability and transient response. The overall procedure is applied to the compensation design for STOL C-8A aircraft in the approach mode.

  14. Descriptive Linear modeling of steady-state visual evoked response

    NASA Technical Reports Server (NTRS)

    Levison, W. H.; Junker, A. M.; Kenner, K.

    1986-01-01

    A study is being conducted to explore use of the steady state visual-evoke electrocortical response as an indicator of cognitive task loading. Application of linear descriptive modeling to steady state Visual Evoked Response (VER) data is summarized. Two aspects of linear modeling are reviewed: (1) unwrapping the phase-shift portion of the frequency response, and (2) parsimonious characterization of task-loading effects in terms of changes in model parameters. Model-based phase unwrapping appears to be most reliable in applications, such as manual control, where theoretical models are available. Linear descriptive modeling of the VER has not yet been shown to provide consistent and readily interpretable results.

  15. Non-equilibrium steady state in the hydro regime

    NASA Astrophysics Data System (ADS)

    Pourhasan, Razieh

    2016-02-01

    We study the existence and properties of the non-equilibrium steady state which arises by putting two copies of systems at different temperatures into a thermal contact. We solve the problem for the relativistic systems that are described by the energy-momentum of a perfect hydro with general equation of state (EOS). In particular, we examine several simple examples: a hydro with a linear EOS, a holographic CFT perturbed by a relevant operator and a barotropic fluid, i.e., P=P({E}) . Our studies suggest that the formation of steady state is a universal result of the hydro regime regardless of the kind of fluid.

  16. Steady-state coherent transfer by adiabatic passage.

    PubMed

    Huneke, Jan; Platero, Gloria; Kohler, Sigmund

    2013-01-18

    We propose steady-state electron transport based on coherent transfer by adiabatic passage (CTAP) in a linearly arranged triple quantum dot with leads attached to the outer dots. Its main feature is repeated steering of single electrons from the first dot to the last dot without relevant occupation of the middle dot. The coupling to leads enables a steady-state current, whose shot noise is significantly suppressed provided that the CTAP protocol performs properly. This represents an indication for the direct transfer between spatially separated dots and, thus, may resolve the problem of finding experimental evidence for the nonoccupation of the middle dot. PMID:23373941

  17. Steady-state entanglement activation in optomechanical cavities

    NASA Astrophysics Data System (ADS)

    Farace, Alessandro; Ciccarello, Francesco; Fazio, Rosario; Giovannetti, Vittorio

    2014-02-01

    Quantum discord, and related indicators, are raising a relentless interest as a novel paradigm of nonclassical correlations beyond entanglement. Here, we discover a discord-activated mechanism yielding steady-state entanglement production in a realistic continuous-variable setup. This comprises two coupled optomechanical cavities, where the optical modes (OMs) communicate through a fiber. We first use a simplified model to highlight the creation of steady-state discord between the OMs. We show next that such discord improves the level of stationary optomechanical entanglement attainable in the system, making it more robust against temperature and thermal noise.

  18. Is There More than One Steady State for Nox?

    NASA Technical Reports Server (NTRS)

    Bakas, G.

    1985-01-01

    The study of alternative steady states for nitrogen oxides is discussed: The production of these oxides and the reactions they undergo in the atmosphere are described. The computerized modelling of the atmosphere using a one dimensional time dependent photochemical model is attempted.

  19. Effects of curvature on asymmetric steady states in catalyst particles

    SciTech Connect

    Lucier, B J

    1981-02-01

    The effects of curvature on steady states of chemical catalytic reactions are investigated by studying the cases of the catalytic particle being a spherical or cylindrical shell. Existence and stability of solutions are studied. It is shown that the solutions converge to the solutions for the catalytic slab when the curvature goes to 0 in each case.

  20. Equilibrium Binding and Steady-State Enzyme Kinetics.

    ERIC Educational Resources Information Center

    Dunford, H. Brian

    1984-01-01

    Points out that equilibrium binding and steady-state enzyme kinetics have a great deal in common and that related equations and error analysis can be cast in identical forms. Emphasizes that if one type of problem solution is taught, the other is also taught. Various methods of data analysis are evaluated. (JM)

  1. Steady-State Multiplicity Features of Chemically Reacting Systems.

    ERIC Educational Resources Information Center

    Luss, Dan

    1986-01-01

    Analyzes steady-state multiplicity in chemical reactors, focusing on the use of two mathematical tools, namely, the catastrophe theory and the singularity theory with a distinguished parameter. These tools can be used to determine the maximum number of possible solutions and the different types of bifurcation diagrams. (JN)

  2. Steady State Load Characterization Fact Sheet: 2012 Chevy Volt

    SciTech Connect

    Don Scoffield

    2015-01-01

    This fact sheet characterizes the steady state charging behavior of a 2012 Chevy Volt. Both level 1 charging (120 volt) and level 2 charging (208 volts) is investigated. This fact sheet contains plots of efficiency, power factor, and current harmonics as vehicle charging is curtailed. Prominent current harmonics are also displayed in a histogram for various charge rates.

  3. CONTROL OF CRYPTOSPORIDIUM OOCYSTS BY STEADY-STATE CONVENTIONAL TREATMENT

    EPA Science Inventory

    Pilot-scale experiments have been performed to assess the ability of conventional treatment to control Cryptosporidium oocysts under steady-state conditions. The work was performed with a pilot plant that was designed to minimize flow rates and, as a result, the number of oocyst...

  4. Pressure updating methods for the steady-state fluid equations

    NASA Technical Reports Server (NTRS)

    Fiterman, A.; Turkel, E.; Vatsa, V.

    1995-01-01

    We consider the steady state equations for a compressible fluid. Since we wish to solve for a range of speeds we must consider the equations in conservation form. For transonic speeds these equations are of mixed type. Hence, the usual approach is to add time derivatives to the steady state equations and then march these equations in time. One then adds a time derivative of the density to the continuity equation, a derivative of the momentum to the momentum equation and a derivative of the total energy to the energy equation. This choice is dictated by the time consistent equations. However, since we are only interested in the steady state this is not necessary. Thus we shall consider the possibility of adding a time derivative of the pressure to the continuity equation and similar modifications for the energy equation. This can then be generalized to adding combinations of time derivatives to each equation since these vanish in the steady state. When using acceleration techniques such as residual smoothing, multigrid, etc. these are applied to the pressure rather than the density. Hence, the code duplicates the behavior of the incompressible equations for low speeds.

  5. The Development of Strategies for the Steady State.

    ERIC Educational Resources Information Center

    Wolfman, Brunetta R.; Wolfman, Burton

    1980-01-01

    Presented is a matrix of institution types and institutional characteristics that can be used in planning for the steady state in colleges and universities. Case studies of six institutions are presented: Harvard University, Boston University, Dartmouth College, Colorado College, University of Massachusetts/Boston, and Massachusetts Community…

  6. Steady-State Pharmacokinetics of Bupropion SR in Juvenile Patients

    ERIC Educational Resources Information Center

    Daviss, W. Burleson; Perel, James M.; Rudolph, George R.; Axelson, David A.; Gilchrist, Richard; Nuss, Sharon; Birmaher, Boris; Brent, David A.

    2005-01-01

    Objective: To examine the steady-state pharmacokinetic properties of bupropion sustained release (SR) and their potential developmental differences in youths. Method: Eleven boys and eight girls aged 11 to 17 years old were prescribed bupropion SR monotherapy for attention-deficit/hyperactivity disorder (n = 16) and/or depressive disorders (n =…

  7. Density Functional Theory for Steady-State Nonequilibrium Molecular Junctions

    NASA Astrophysics Data System (ADS)

    Liu, Shuanglong; Nurbawono, Argo; Zhang, Chun

    2015-10-01

    We present a density functional theory (DFT) for steady-state nonequilibrium quantum systems such as molecular junctions under a finite bias. Based on the steady-state nonequilibrium statistics that maps nonequilibrium to an effective equilibrium, we show that ground-state DFT (GS-DFT) is not applicable in this case and two densities, the total electron density and the density of current-carrying electrons, are needed to uniquely determine the properties of the corresponding nonequilibrium system. A self-consistent mean-field approach based on two densities is then derived. The theory is implemented into SIESTA computational package and applied to study nonequilibrium electronic/transport properties of a realistic carbon-nanotube (CNT)/Benzene junction. Results obtained from our steady-state DFT (SS-DFT) are compared with those of conventional GS-DFT based transport calculations. We show that SS-DFT yields energetically more stable nonequilibrium steady state, predicts significantly lower electric current, and is able to produce correct electronic structures in local equilibrium under a limiting case.

  8. Combined Steady-State and Dynamic Heat Exchanger Experiment

    ERIC Educational Resources Information Center

    Luyben, William L.; Tuzla, Kemal; Bader, Paul N.

    2009-01-01

    This paper describes a heat-transfer experiment that combines steady-state analysis and dynamic control. A process-water stream is circulated through two tube-in-shell heat exchangers in series. In the first, the process water is heated by steam. In the second, it is cooled by cooling water. The equipment is pilot-plant size: heat-transfer areas…

  9. Steady-State Squeezing in the Micromaser Cavity Field

    NASA Technical Reports Server (NTRS)

    Nayak, N.

    1996-01-01

    It is shown that the radiation field in the presently operated micromaser cavity may be squeezed when pumped with polarized atoms. The squeezing is in the steady state field corresponding to the action similar to that of the conventional micromaser, with the effect of cavity dissipation during entire t(sub c) = tau + t(sub cav).

  10. Steady States of the Parametric Rotator and Pendulum

    ERIC Educational Resources Information Center

    Bouzas, Antonio O.

    2010-01-01

    We discuss several steady-state rotation and oscillation modes of the planar parametric rotator and pendulum with damping. We consider a general elliptic trajectory of the suspension point for both rotator and pendulum, for the latter at an arbitrary angle with gravity, with linear and circular trajectories as particular cases. We treat the…

  11. Experimental study of multiple steady states in homogeneous azeotropic distillation

    SciTech Connect

    Guettinger, T.E.; Dorn, C.; Morari, M.

    1997-03-01

    Bekiaris et al. (1993) explained the existence of multiple steady states in homogeneous ternary azeotropic distillation, on the basis of the analysis of the case of infinite reflux and infinite column length (infinite number of trays). They showed that the predictions of multiple steady states for such infinite columns have relevant implications for columns of finite length operated at finite reflux. In this article, experiments are described for the ternary homogeneous system methanol-methyl butyrate-toluene which demonstrate the existence of multiple steady states (output multiplicities) caused by the vapor-liquid-equilibrium. The experiments on an industrial pilot column show two stable steady states for the same feed flow rate and composition and the same set of operating parameters. The measurements are in excellent agreement with the predictions obtained for infinite columns using the {infinity}/{infinity} analysis tool as well as with stage-by-stage simulation results. These experiments represent the first published study reporting evidence for the predictions and simulations by various researchers showing that type of output multiplicities in distillation.

  12. Steady state volcanism: Evidence from eruption histories of polygenetic volcanoes

    SciTech Connect

    Wadge, G.

    1982-05-10

    Some volcanoes erupt magma at average rates which are constant over periods of many years, even through this magma may appear in a complex series of eruptions. This constancy of output is tested by construction of a curve of cumulative volume of erupted magma, which is linear for steady state volcanism, and whose gradient defines the steady state rate Q/sub s/s. The assumption is made that Q/sub s/s is the rate at which magma is supplied to these polygenetic volcanoes. Five general types of eruptive behavior can be distinguished from the cumulative volume studied. These types are interpreted in terms of a simple model of batches of magma rising buoyantly through the crust and interacting with a small-capacity subvolcanic magma reservoir. Recognition of previous steady state behavior at a volcano may enable the cumulative volume curve to be used empirically as a constraint on the timing and volume of the next eruption. The steady state model thus has a limited predictive capability. With the exception of Kilauea (O/sub s/s = 4m/sup 3/ s/sup -1/) all the identified steady state volcanoes have values of Q/sub s/s of a few tenths of one cubic meter per second. These rates are consistent with the minimum flux rates required by theoretical cooling models of batches of magma traversing the crust. The similarity of these Q/sub s/s values of volcanoes (producing basalt, andesite, and dacite magmas) in very different tectonic settings suggests that the common factors of crustal buoyancy forces and the geotherm-controlled cooling rates control the dynamics of magma supply through the crust. Long-term dormancy at active volcanoes may be a manifestation of the steady accumulation of magma in large crustal reservoirs, a process that complements the intermittent periods of steady state output at the surface. This possibility has several implications, the most important of which is that it provides a constraint on the supply rate of new magma to the bases of plutons.

  13. Steady-state spin squeezing generation in diamond nanostructures

    NASA Astrophysics Data System (ADS)

    Ma, Yong-Hong; Zhang, Xue-Feng

    2014-04-01

    As one kind of many body entangled states, spin squeezed states can be used to implement the high precise measurement beyond the standard quantum limit. Inspired by the novel spin squeezing scheme based on phonon-induced spin-spin interactions [S. D. Bennett et al., Phys. Rev. Lett. 110, 156402 (2013), 10.1103/PhysRevLett.110.156402], we reexamine the steady-state behaviors for the spin ensemble in diamond nanostructures by exerting a controllable microwave field. By using the phase-space approach we calculate analytically fluctuations of collective spin operators. We find that there is bistability and spin squeezing for the steady-state spin ensemble, despite the mechanical damping considered. Moreover, our work shows that bistability and spin squeezing can be controlled by microwave field and Zeeman splitting. The present scheme can be used to increase the stability of spin clocks, magnetometers, and other measurements based on spin-spin interaction in diamond nanostructures.

  14. Analysis of slow transitions between nonequilibrium steady states

    NASA Astrophysics Data System (ADS)

    Mandal, Dibyendu; Jarzynski, Christopher

    2016-06-01

    Transitions between nonequilibrium steady states obey a generalized Clausius inequality, which becomes an equality in the quasistatic limit. For slow but finite transitions, we show that the behavior of the system is described by a response matrix whose elements are given by a far-from-equilibrium Green–Kubo formula, involving the decay of correlations evaluated in the nonequilibrium steady state. This result leads to a fluctuation-dissipation relation between the mean and variance of the nonadiabatic entropy production, Δ {{s}\\text{na}} . Furthermore, our results extend—to nonequilibrium steady states—the thermodynamic metric structure introduced by Sivak and Crooks for analyzing minimal-dissipation protocols for transitions between equilibrium states.

  15. Turnover of messenger RNA: Polysome statistics beyond the steady state

    NASA Astrophysics Data System (ADS)

    Valleriani, A.; Ignatova, Z.; Nagar, A.; Lipowsky, R.

    2010-03-01

    The interplay between turnover or degradation and ribosome loading of messenger RNA (mRNA) is studied theoretically using a stochastic model that is motivated by recent experimental results. Random mRNA degradation affects the statistics of polysomes, i.e., the statistics of the number of ribosomes per mRNA as extracted from cells. Since ribosome loading of newly created mRNA chains requires some time to reach steady state, a fraction of the extracted mRNA/ribosome complexes does not represent steady state conditions. As a consequence, the mean ribosome density obtained from the extracted complexes is found to be inversely proportional to the mRNA length. On the other hand, the ribosome density profile shows an exponential decrease along the mRNA for prokaryotes and becomes uniform in eukaryotic cells.

  16. Persistent Probability Currents in Non-equilibrium Steady States

    NASA Astrophysics Data System (ADS)

    Zia, Royce; Mellor, Andrew; Mobilia, Mauro; Fox-Kemper, Baylor; Weiss, Jeffrey

    For many interesting phenomena in nature, from all life forms to the global climate, the fundamental hypothesis of equilibrium statistical mechanics does not apply. Instead, they are perhaps better characterized by non-equilibrium steady states, evolving with dynamical rules which violate detailed balance. In particular, such dynamics leads to the existence of non-trivial, persistent probability currents - a principal characteristic of non-equilibrium steady states. In turn, they give rise to the notion of 'probability angular momentum'. Observable manifestations of such abstract concepts will be illustrated in two distinct contexts: a heterogeneous nonlinear voter model and our ocean heat content. Supported in part by grants from the Bloom Agency (Leeds, UK) and the US National Science Foundation: OCE-1245944. AM acknowledges the support of EPSRC Industrial CASE Studentship, Grant No. EP/L50550X/1.

  17. Nonequilibrium Steady States of a Stochastic Model System.

    NASA Astrophysics Data System (ADS)

    Zhang, Qiwei

    We study the nonequilibrium steady state of a stochastic lattice gas model, originally proposed by Katz, Lebowitz and Spohn (Phys. Rev. B 28: 1655 (1983)). Firstly, we solve the model on some small lattices exactly in order to see the general dependence of the steady state upon different parameters of the model. Nextly, we derive some analytical results for infinite lattice systems by taking some suitable limits. We then present some renormalization group results for the continuum version of the model via field theoretical techniques, the supersymmetry of the critical dynamics in zero field is also explored. Finally, we report some very recent 3-D Monte Carlo simulation results, which have been obtained by applying Multi-Spin-Coding techniques on a CDC vector supercomputer - Cyber 205 at John von Neumann Center.

  18. Hydrodynamics of stratified epithelium: Steady state and linearized dynamics

    NASA Astrophysics Data System (ADS)

    Yeh, Wei-Ting; Chen, Hsuan-Yi

    2016-05-01

    A theoretical model for stratified epithelium is presented. The viscoelastic properties of the tissue are assumed to be dependent on the spatial distribution of proliferative and differentiated cells. Based on this assumption, a hydrodynamic description of tissue dynamics at the long-wavelength, long-time limit is developed, and the analysis reveals important insights into the dynamics of an epithelium close to its steady state. When the proliferative cells occupy a thin region close to the basal membrane, the relaxation rate towards the steady state is enhanced by cell division and cell apoptosis. On the other hand, when the region where proliferative cells reside becomes sufficiently thick, a flow induced by cell apoptosis close to the apical surface enhances small perturbations. This destabilizing mechanism is general for continuous self-renewal multilayered tissues; it could be related to the origin of certain tissue morphology, tumor growth, and the development pattern.

  19. Steady States in Fermionic Interacting Dissipative Floquet Systems

    NASA Astrophysics Data System (ADS)

    Seetharam, Karthik; Bardyn, Charles; Lindner, Netanel; Rudner, Mark; Refael, Gil

    The possibility to drive quantum systems periodically in time offers unique ways to deeply modify their fundamental properties, as exemplified by Floquet topological insulators. It also opens the door to a variety of non-equilibrium effects. Resonant driving fields, in particular, lead to excitations which can expose the system to heating. We previously demonstrated that the analog of thermal states can be achieved and controlled in a fermionic Floquet system in the presence of phonon scattering, spontaneous emission, and an energy filtered fermionic bath. However, interactions play an important role in thermalization and present additional sources of heating. We analyze the effects of weak interactions in the presence of dissipation and the role of coherences in determining the steady state of the driven system. Interactions generically create additional excitations and, in contrast to phonons, may sustain inter-Floquet-band coherences at steady state.

  20. Steady-state current transfer and scattering theory.

    PubMed

    Ben-Moshe, Vered; Rai, Dhurba; Skourtis, Spiros S; Nitzan, Abraham

    2010-08-01

    The correspondence between the steady-state theory of current transfer and scattering theory in a system of coupled tight-binding models of one-dimensional wires is explored. For weak interwire coupling both calculations give nearly identical results, except at singular points associated with band edges. The effect of decoherence in each of these models is studied using a generalization of the Liouville-von Neuman equation suitable for steady-state situations. An example of a single impurity model is studied in detail, leading to a lattice model of scattering off target that affects both potential scattering and decoherence. For an impurity level lying inside the energy band, the transmission coefficient diminishes with increasing dephasing rate, while the opposite holds for impurity energy outside the band. The efficiency of current transfer in the coupled wire system decreases with increasing dephasing. PMID:20707524

  1. Master equation based steady-state cluster perturbation theory

    NASA Astrophysics Data System (ADS)

    Nuss, Martin; Dorn, Gerhard; Dorda, Antonius; von der Linden, Wolfgang; Arrigoni, Enrico

    2015-09-01

    A simple and efficient approximation scheme to study electronic transport characteristics of strongly correlated nanodevices, molecular junctions, or heterostructures out of equilibrium is provided by steady-state cluster perturbation theory. In this work, we improve the starting point of this perturbative, nonequilibrium Green's function based method. Specifically, we employ an improved unperturbed (so-called reference) state ρ̂S, constructed as the steady state of a quantum master equation within the Born-Markov approximation. This resulting hybrid method inherits beneficial aspects of both the quantum master equation as well as the nonequilibrium Green's function technique. We benchmark this scheme on two experimentally relevant systems in the single-electron transistor regime: an electron-electron interaction based quantum diode and a triple quantum dot ring junction, which both feature negative differential conductance. The results of this method improve significantly with respect to the plain quantum master equation treatment at modest additional computational cost.

  2. Steady state magnetic field configurations for the earth's magnetotail

    NASA Technical Reports Server (NTRS)

    Hau, L.-N.; Wolf, R. A.; Voigt, G.-H.; Wu, C. C.

    1989-01-01

    A two-dimensional, force-balance magnetic field model is presented. The theoretical existence of a steady state magnetic field configuration that is force-balanced and consistent with slow, lossless, adiabatic, earthward convection within the limit of the ideal MHD is demonstrated. A numerical solution is obtained for a two-dimensional magnetosphere with a rectangular magnetopause and nonflaring tail. The results are consistent with the convection time sequences reported by Erickson (1985).

  3. Intense steady state neutron source. The CNR reactor

    SciTech Connect

    Difilippo, F.C.; Moon, R.M.; Gambill, W.R.; Moon, R.M.; Primm, R.T. III; West, C.D.

    1986-01-01

    The Center for Neutron Research (CNR) has been proposed in response to the needs - neutron flux, spectrum, and experimental facilities - that have been identified through workshops, studies, and discussions by the neutron-scattering, isotope, and materials irradiation research communities. The CNR is a major new experimental facility consisting of a reactor-based steady state neutron source of unprecedented flux, together with extensive facilities and instruments for neutron scattering, isotope production, materials irradiation, and other areas of research.

  4. Analysis of steady-state characteristics of bistable laser diodes

    SciTech Connect

    Zhong Lichen; Guo Yili

    1987-05-01

    In this paper we analyze the steady-state characteristics of bistable semiconductor laser diode (BILD). A simple model for optical output of BILD is obtained using nonlinear rate equations for electron and photon densities. This model emphasizes the physical mechanisms and parameters responsible for the bistability, gives the state equation and explains the main features of BILD. Bistability with a very large hysteresis in P/sub 0/-P/sub 4/ characteristics is a distinctive feature of BILD.

  5. Analytic Steady-State Accuracy of a Spacecraft Attitude Estimator

    NASA Technical Reports Server (NTRS)

    Markley, F. Landis

    2000-01-01

    This paper extends Farrenkopf's analysis of a single-axis spacecraft attitude estimator using gyro and angle sensor data to include the angle output white noise of a rate-integrating gyro. Analytic expressions are derived for the steady-state pre-update and post-update angle and drift bias variances and for the state update equations. It is shown that only part of the state update resulting from the angle sensor measurement is propagated to future times.

  6. Transitional steady states of exchange dynamics between finite quantum systems.

    PubMed

    Jeon, Euijin; Yi, Juyeon; Kim, Yong Woon

    2016-08-01

    We examine energy and particle exchange between finite-sized quantum systems and find a new form of nonequilibrium state. The exchange rate undergoes stepwise evolution in time, and its magnitude and sign dramatically change according to system size differences. The origin lies in interference effects contributed by multiply scattered waves at system boundaries. Although such characteristics are utterly different from those of true steady state for infinite systems, Onsager's reciprocal relation remains universally valid. PMID:27627275

  7. Steady-state superradiance with alkaline-earth-metal atoms

    SciTech Connect

    Meiser, D.; Holland, M. J.

    2010-03-15

    Alkaline-earth-metal-like atoms with ultranarrow transitions open the door to a new regime of cavity quantum electrodynamics. That regime is characterized by a critical photon number that is many orders of magnitude smaller than what can be achieved in conventional systems. We show that it is possible to achieve superradiance in steady state with such systems. We discuss the basic underlying mechanisms as well as the key experimental requirements.

  8. Cyclic steady state stress-strain behavior of UHMW polyethylene.

    PubMed

    Krzypow, D J; Rimnac, C M

    2000-10-01

    To increase the long-term performance of total joint replacements, finite element analyses of ultra high molecular weight polyethylene (UHMWPE) components have been conducted to predict the effect of load on the stress and strain distributions occurring on and within these components. Early models incorporated the monotonic behavior of UHMWPE without considering the unloading and cyclic loading behavior. However, UHMWPE components undergo cyclic loading during use and at least two wear damage modes (pitting and delamination) are thought to be associated with the fatigue fracture properties of UHMWPE. The objective of this study was to examine the fully reversed uniaxial tension/compression cyclic steady state stress-strain behavior of UHMWPE as a first step towards developing a cyclic constitutive relationship for UHMWPE. The hypothesis that cycling results in a permanent change in the stress-strain relationship, that is, that the cyclic steady state represents a new cyclically stabilized state, was examined. It was found that, like other ductile polymers, UHMWPE substantially cyclically softens under fully reversed uniaxial straining. More cyclic softening occurred in tension than in compression. Furthermore, cyclic steady state was attained, but not cyclic stability. It is suggested that it may be more appropriate to base a material constitutive relationship for UHMWPE for finite element analyses of components upon a cyclically modified stress-strain relationship. PMID:10966018

  9. Ideal MHD Stability of ITER Steady State Scenarios with ITBs

    SciTech Connect

    F.M. Poli, C.E. Kessel, S. Jardin, J. Manickam, M. Chance, J. Chen

    2011-07-27

    One of ITER goals is to demonstrate feasibility of continuous operations using non-inductive current drive. Two main candidates have been identified for advanced operations: the long duration, high neutron fluency hybrid scenario and the steady state scenario, both operating at a plasma current lower than the reference ELMy scenario [1][2] to minimize the required current drive. The steady state scenario targets plasmas with current 7-10 MA in the flat-top, 50% of which will be provided by the self-generated, pressure-driven bootstrap current. It has been estimated that, in order to obtain a fusion gain Q > 5 at a current of 9 MA, it should be ΒN > 2.5 and H > 1.5 [3]. This implies the presence of an Internal Transport Barrier (ITB). This work discusses how the stability of steady state scenarios with ITBs is affected by the external heating sources and by perturbations of the equilibrium profiles.

  10. Mitoenergetic Dysfunction Triggers a Rapid Compensatory Increase in Steady-State Glucose Flux.

    PubMed

    Liemburg-Apers, Dania C; Schirris, Tom J J; Russel, Frans G M; Willems, Peter H G M; Koopman, Werner J H

    2015-10-01

    ATP can be produced in the cytosol by glycolytic conversion of glucose (GLC) into pyruvate. The latter can be metabolized into lactate, which is released by the cell, or taken up by mitochondria to fuel ATP production by the tricarboxylic acid cycle and oxidative phosphorylation (OXPHOS) system. Altering the balance between glycolytic and mitochondrial ATP generation is crucial for cell survival during mitoenergetic dysfunction, which is observed in a large variety of human disorders including cancer. To gain insight into the kinetic properties of this adaptive mechanism we determined here how acute (30 min) inhibition of OXPHOS affected cytosolic GLC homeostasis. GLC dynamics were analyzed in single living C2C12 myoblasts expressing the fluorescent biosensor FLII(12)Pglu-700μδ6 (FLII). Following in situ FLII calibration, the kinetic properties of GLC uptake (V1) and GLC consumption (V2) were determined independently and used to construct a minimal mathematical model of cytosolic GLC dynamics. After validating the model, it was applied to quantitatively predict V1 and V2 at steady-state (i.e., when V1 = V2 = Vsteady-state) in the absence and presence of OXPHOS inhibitors. Integrating model predictions with experimental data on lactate production, cell volume, and O2 consumption revealed that glycolysis and mitochondria equally contribute to cellular ATP production in control myoblasts. Inhibition of OXPHOS induced a twofold increase in Vsteady-state and glycolytic ATP production flux. Both in the absence and presence of OXPHOS inhibitors, GLC was consumed at near maximal rates, meaning that GLC consumption is rate-limiting under steady-state conditions. Taken together, we demonstrate here that OXPHOS inhibition increases steady-state GLC uptake and consumption in C2C12 myoblasts. This activation fully compensates for the reduction in mitochondrial ATP production, thereby maintaining the balance between cellular ATP supply and demand. PMID:26445438

  11. KIR channel activation contributes to onset and steady-state exercise hyperemia in humans.

    PubMed

    Crecelius, Anne R; Luckasen, Gary J; Larson, Dennis G; Dinenno, Frank A

    2014-09-01

    We tested the hypothesis that activation of inwardly rectifying potassium (KIR) channels and Na(+)-K(+)-ATPase, two pathways that lead to hyperpolarization of vascular cells, contributes to both the onset and steady-state hyperemic response to exercise. We also determined whether after inhibiting these pathways nitric oxide (NO) and prostaglandins (PGs) are involved in the hyperemic response. Forearm blood flow (FBF; Doppler ultrasound) was determined during rhythmic handgrip exercise at 10% maximal voluntary contraction for 5 min in the following conditions: control [saline; trial 1 (T1)]; with combined inhibition of KIR channels and Na(+)-K(+)-ATPase alone [via barium chloride (BaCl2) and ouabain, respectively; trial 2 (T2)]; and with additional combined nitric oxide synthase (N(G)-monomethyl-l-arginine) and cyclooxygenase inhibition [ketorolac; trial 3 (T3)]. In T2, the total hyperemic responses were attenuated ~50% from control (P < 0.05) at exercise onset, and there was minimal further effect in T3 (protocol 1; n = 11). In protocol 2 (n = 8), steady-state FBF was significantly reduced during T2 vs. T1 (133 ± 15 vs. 167 ± 17 ml/min; Δ from control: -20 ± 3%; P < 0.05) and further reduced during T3 (120 ± 15 ml/min; -29 ± 3%; P < 0.05 vs. T2). In protocol 3 (n = 8), BaCl2 alone reduced FBF during onset (~50%) and steady-state exercise (~30%) as observed in protocols 1 and 2, respectively, and addition of ouabain had no further impact. Our data implicate activation of KIR channels as a novel contributing pathway to exercise hyperemia in humans. PMID:24973385

  12. Stress-induced inhibition of translation independently of eIF2α phosphorylation.

    PubMed

    Knutsen, Jon Halvor Jonsrud; Rødland, Gro Elise; Bøe, Cathrine Arnason; Håland, Tine Weise; Sunnerhagen, Per; Grallert, Beáta; Boye, Erik

    2015-12-01

    Exposure of fission yeast cells to ultraviolet (UV) light leads to inhibition of translation and phosphorylation of the eukaryotic initiation factor-2α (eIF2α). This phosphorylation is a common response to stress in all eukaryotes. It leads to inhibition of translation at the initiation stage and is thought to be the main reason why stressed cells dramatically reduce protein synthesis. Phosphorylation of eIF2α has been taken as a readout for downregulation of translation, but the role of eIF2α phosphorylation in the downregulation of general translation has not been much investigated. We show here that UV-induced global inhibition of translation in fission yeast cells is independent of eIF2α phosphorylation and the eIF2α kinase general control nonderepressible-2 protein (Gcn2). Also, in budding yeast and mammalian cells, the UV-induced translational depression is largely independent of GCN2 and eIF2α phosphorylation. Furthermore, exposure of fission yeast cells to oxidative stress generated by hydrogen peroxide induced an inhibition of translation that is also independent of Gcn2 and of eIF2α phosphorylation. Our findings show that stress-induced translational inhibition occurs through an unknown mechanism that is likely to be conserved through evolution. PMID:26493332

  13. Stress-induced inhibition of translation independently of eIF2α phosphorylation

    PubMed Central

    Knutsen, Jon Halvor Jonsrud; Rødland, Gro Elise; Bøe, Cathrine Arnason; Håland, Tine Weise; Sunnerhagen, Per; Grallert, Beáta; Boye, Erik

    2015-01-01

    ABSTRACT Exposure of fission yeast cells to ultraviolet (UV) light leads to inhibition of translation and phosphorylation of the eukaryotic initiation factor-2α (eIF2α). This phosphorylation is a common response to stress in all eukaryotes. It leads to inhibition of translation at the initiation stage and is thought to be the main reason why stressed cells dramatically reduce protein synthesis. Phosphorylation of eIF2α has been taken as a readout for downregulation of translation, but the role of eIF2α phosphorylation in the downregulation of general translation has not been much investigated. We show here that UV-induced global inhibition of translation in fission yeast cells is independent of eIF2α phosphorylation and the eIF2α kinase general control nonderepressible-2 protein (Gcn2). Also, in budding yeast and mammalian cells, the UV-induced translational depression is largely independent of GCN2 and eIF2α phosphorylation. Furthermore, exposure of fission yeast cells to oxidative stress generated by hydrogen peroxide induced an inhibition of translation that is also independent of Gcn2 and of eIF2α phosphorylation. Our findings show that stress-induced translational inhibition occurs through an unknown mechanism that is likely to be conserved through evolution. PMID:26493332

  14. The Transformation Suppressor Pdcd4 Is a Novel Eukaryotic Translation Initiation Factor 4A Binding Protein That Inhibits Translation

    PubMed Central

    Yang, Hsin-Sheng; Jansen, Aaron P.; Komar, Anton A.; Zheng, Xiaojing; Merrick, William C.; Costes, Sylvain; Lockett, Stephen J.; Sonenberg, Nahum; Colburn, Nancy H.

    2003-01-01

    Pdcd4 is a novel transformation suppressor that inhibits tumor promoter-induced neoplastic transformation and the activation of AP-1-dependent transcription required for transformation. A yeast two-hybrid analysis revealed that Pdcd4 associates with the eukaryotic translation initiation factors eIF4AI and eIF4AII. Immunofluorescent confocal microscopy showed that Pdcd4 colocalizes with eIF4A in the cytoplasm. eIF4A is an ATP-dependent RNA helicase needed to unwind 5′ mRNA secondary structure. Recombinant Pdcd4 specifically inhibited the helicase activity of eIF4A and eIF4F. In vivo translation assays showed that Pdcd4 inhibited cap-dependent but not internal ribosome entry site (IRES)-dependent translation. In contrast, Pdcd4D418A, a mutant inactivated for binding to eIF4A, failed to inhibit cap-dependent or IRES-dependent translation or AP-1 transactivation. Recombinant Pdcd4 prevented eIF4A from binding to the C-terminal region of eIF4G (amino acids 1040 to 1560) but not to the middle region of eIF4G(amino acids 635 to 1039). In addition, both Pdcd4 and Pdcd4D418A bound to the middle region of eIF4G. The mechanism by which Pdcd4 inhibits translation thus appears to involve inhibition of eIF4A helicase, interference with eIF4A association-dissociation from eIF4G, and inhibition of eIF4A binding to the C-terminal domain of eIF4G. Pdcd4 binding to eIF4A is linked to its transformation-suppressing activity, as Pdcd4-eIF4A binding and consequent inhibition of translation are required for Pdcd4 transrepression of AP-1. PMID:12482958

  15. Steady-state responses of a belt-drive dynamical system under dual excitations

    NASA Astrophysics Data System (ADS)

    Ding, Hu

    2016-02-01

    The stable steady-state periodic responses of a belt-drive system with a one-way clutch are studied. For the first time, the dynamical system is investigated under dual excitations. The system is simultaneously excited by the firing pulsations of the engine and the harmonic motion of the foundation. Nonlinear discrete-continuous equations are derived for coupling the transverse vibration of the belt spans and the rotations of the driving and driven pulleys and the accessory pulley. The nonlinear dynamics is studied under equal and multiple relations between the frequency of the firing pulsations and the frequency of the foundation motion. Furthermore, translating belt spans are modeled as axially moving strings. A set of nonlinear piecewise ordinary differential equations is achieved by using the Galerkin truncation. Under various relations between the excitation frequencies, the time histories of the dynamical system are numerically simulated based on the time discretization method. Furthermore, the stable steady-state periodic response curves are calculated based on the frequency sweep. Moreover, the convergence of the Galerkin truncation is examined. Numerical results demonstrate that the one-way clutch reduces the resonance amplitude of the rotations of the driven pulley and the accessory pulley. On the other hand, numerical examples prove that the resonance areas of the belt spans are decreased by eliminating the torque-transmitting in the opposite direction. With the increasing amplitude of the foundation excitation, the damping effect of the one-way clutch will be reduced. Furthermore, as the amplitude of the firing pulsations of the engine increases, the jumping phenomena in steady-state response curves of the belt-drive system with or without a one-way clutch both occur.

  16. Mimicking Nonequilibrium Steady States with Time-Periodic Driving

    NASA Astrophysics Data System (ADS)

    Raz, O.; Subaşı, Y.; Jarzynski, C.

    2016-04-01

    Under static conditions, a system satisfying detailed balance generically relaxes to an equilibrium state in which there are no currents. To generate persistent currents, either detailed balance must be broken or the system must be driven in a time-dependent manner. A stationary system that violates detailed balance evolves to a nonequilibrium steady state (NESS) characterized by fixed currents. Conversely, a system that satisfies instantaneous detailed balance but is driven by the time-periodic variation of external parameters—also known as a stochastic pump (SP)—reaches a periodic state with nonvanishing currents. In both cases, these currents are maintained at the cost of entropy production. Are these two paradigmatic scenarios effectively equivalent? For discrete-state systems, we establish a mapping between nonequilibrium stationary states and stochastic pumps. Given a NESS characterized by a particular set of stationary probabilities, currents, and entropy production rates, we show how to construct a SP with exactly the same (time-averaged) values. The mapping works in the opposite direction as well. These results establish a proof of principle: They show that stochastic pumps are able to mimic the behavior of nonequilibrium steady states, and vice versa, within the theoretical framework of discrete-state stochastic thermodynamics. Nonequilibrium steady states and stochastic pumps are often used to model, respectively, biomolecular motors driven by chemical reactions and artificial molecular machines steered by the variation of external, macroscopic parameters. Our results loosely suggest that anything a biomolecular machine can do, an artificial molecular machine can do equally well. We illustrate this principle by showing that kinetic proofreading, a NESS mechanism that explains the low error rates in biochemical reactions, can be effectively mimicked by a constrained periodic driving.

  17. Steady state free radical budgets and ozone photochemistry during TOPSE

    NASA Astrophysics Data System (ADS)

    Cantrell, Christopher A.; Mauldin, L.; Zondlo, M.; Eisele, F.; Kosciuch, E.; Shetter, R.; Lefer, B.; Hall, S.; Campos, T.; Ridley, B.; Walega, J.; Fried, A.; Wert, B.; Flocke, F.; Weinheimer, A.; Hannigan, J.; Coffey, M.; Atlas, E.; Stephens, S.; Heikes, B.; Snow, J.; Blake, D.; Blake, N.; Katzenstein, A.; Lopez, J.; Browell, E. V.; Dibb, J.; Scheuer, E.; Seid, G.; Talbot, R.

    2003-02-01

    A steady state model, constrained by a number of measured quantities, was used to derive peroxy radical levels for the conditions of the Tropospheric Ozone Production about the Spring Equinox (TOPSE) campaign. The analysis is made using data collected aboard the NCAR/NSF C-130 aircraft from February through May 2000 at latitudes from 40° to 85°N, and at altitudes from the surface to 7.6 km. HO2 + RO2 radical concentrations were measured during the experiment, which are compared with model results over the domain of the study showing good agreement on the average. Average measurement/model ratios are 1.04 (σ = 0.73) and 0.96 (σ = 0.52) for the MLB and HLB, respectively. Budgets of total peroxy radical levels as well as of individual free radical members were constructed, which reveal interesting differences compared to studies at lower latitudes. The midlatitude part of the study region is a significant net source of ozone, while the high latitudes constitute a small net sink leading to the hypothesis that transport from the middle latitudes can explain the observed increase in ozone in the high latitudes. Radical reservoir species concentrations are modeled and compared with the observations. For most conditions, the model does a good job of reproducing the formaldehyde observations, but the peroxide observations are significantly less than steady state for this study. Photostationary state (PSS) derived total peroxy radical levels and NO/NO2 ratios are compared with the measurements and the model; PSS-derived results are higher than observations or the steady state model at low NO concentrations.

  18. The requirements of a next step large steady state tokamak

    NASA Astrophysics Data System (ADS)

    Janeschitz, G.; Barabaschi, P.; Federici, G.; Ioki, K.; Ladd, P.; Mukhovatov, V.; Sugihara, M.; Tivey, R.; ITER-JCT; Home Team

    2000-06-01

    After a decision by the ITER parties to investigate the possibility of designing a reduced cost version of ITER several possible machine layouts with different aspect ratios were studied. Relatively early in this process it became clear that there is no significant cost difference between different aspect ratios and that there is a maximum realistically possible aspect ratio for a machine with 6 m major radius and rather high plasma shaping. Following this study a machine with an intermediate aspect ratio (3.1) called the ITER Fusion Energy Advanced Tokamak (ITER FEAT) was chosen as the basis for the outline design of a reduced cost ITER. Several potential steady state scenarios can be investigated in ITER FEAT, i.e. monotonic or reversed shear at full or reduced minor radius. In addition, so-called hybrid discharges, are feasible where a mixture of inductive and non-inductive current drive as well as bootstrap current allows long pulse discharges of the order of 2500 s. The βN values and H factors required for these discharges are in the same range as those observed on present machines, which provides confidence that such discharges can be studied in ITER FEAT. However, due to uncertainties in physics knowledge, for example the current drive efficiency off-axis, it is impossible at present to generate a completely self-consistent scenario taking all boundary conditions, for example engineering or heating system constraints, into account. In addition, all of these regimes have a potential problem with divertor operation compatibility (low edge density) and with helium exhaust which has to be addressed in existing experiments. For the engineering design of the in-vessel components and for the balance of the plant there is practically no difference between inductive (500 s) and steady state operation. However, the choice of heating systems and the distribution of power between them will be strongly influenced by the envisaged steady state scenarios.

  19. Skewness of steady-state current fluctuations in nonequilibrium systems

    NASA Astrophysics Data System (ADS)

    Belousov, Roman; Cohen, E. G. D.; Wong, Chun-Shang; Goree, John A.; Feng, Yan

    2016-04-01

    A skewness of the probability for instantaneous current fluctuations, in a nonequilibrium steady state, is observed experimentally in a dusty plasma. This skewness is attributed to the spatial asymmetry, which is imminent to the nonequilibrium systems due to the external hydrodynamic gradient. Using the modern framework of the large deviation theory, we extend the Onsager-Machlup ansatz for equilibrium fluctuations to systems with a preferred spatial direction, and provide a modulated Gaussian probability distribution, which is tested by simulations. This probability distribution is also of potential interest for other statistical disciplines. Connections with the principles of statistical mechanics, due to Boltzmann and Gibbs, are discussed as well.

  20. Ergodicity, mixing, and time reversibility for atomistic nonequilibrium steady states

    SciTech Connect

    Hoover, W.G.; Kum, O.

    1997-11-01

    Ergodic mixing is prerequisite to any statistical-mechanical calculation of properties derived from atomistic dynamical simulations. Thus the time-reversible thermostats and ergostats used in simulating Gibbsian equilibrium dynamics or nonequilibrium steady-state dynamics should impose ergodicity and mixing. Though it is hard to visualize many-dimensional phase-space distributions, recent developments provide several practical numerical approaches to the problem of ergodic mixing. Here we apply three of these approaches to a useful nonequilibrium test problem, an oscillator in a temperature gradient. {copyright} {ital 1997} {ital The American Physical Society}

  1. Tracking and controlling unstable steady states of dynamical systems

    NASA Astrophysics Data System (ADS)

    Tamaševičiūtė, Elena; Mykolaitis, Gytis; Bumelienė, Skaidra; Tamaševičius, Arūnas

    2014-03-01

    An adaptive controller for stabilization of unknown unstable steady states (spirals, nodes and saddles) of nonlinear dynamical systems is considered and its robustness under the changes of the location of the fixed point in the phase space is demonstrated. An analog electronic controller, based on a low-pass filter technique, is described. It can be easily switched between a stable and an unstable mode of operation for stabilizing either spirals/nodes or saddles, respectively. Numerical and experimental results for two autonomous systems, the damped Duffing-Holmes oscillator and the chaotic Lorenz system, are presented.

  2. Steady State Sedimentation in a Liquid Fluidized Bed

    NASA Technical Reports Server (NTRS)

    Segre, P. N.; Curreri, Peter A. (Technical Monitor)

    2002-01-01

    The velocity fluctuations and the local particle concentration of a particle suspension exhibiting steady state sedimentation in a fluidized bed are determined as a function of height along the particle column. Both the velocity fluctuations and the particle volume fraction are found to strongly depend on height. We account for the stability of the bed by a simple model evoking a flux balance. Velocity fluctuations driving a downward particle flux are compensated by an upward particle flux stemming from an excess flow velocity due to the concentration gradient of the system.

  3. Steady-State Solution of a Flexible Wing

    NASA Technical Reports Server (NTRS)

    Karkehabadi, Reza; Chandra, Suresh; Krishnamurthy, Ramesh

    1997-01-01

    A fluid-structure interaction code, ENSAERO, has been used to compute the aerodynamic loads on a swept-tapered wing. The code has the capability of using Euler or Navier-Stokes equations. Both options have been used and compared in the present paper. In the calculation of the steady-state solution, we are interested in knowing how the flexibility of the wing influences the lift coefficients. If the results of a flexible wing are not affected by the flexibility of the wing significantly, one could consider the wing to be rigid and reduce the problem from fluid-structure interaction to a fluid problem.

  4. Quantum-classical correspondence in steady states of nonadiabatic systems

    SciTech Connect

    Fujii, Mikiya; Yamashita, Koichi

    2015-12-31

    We first present nonadiabatic path integral which is exact formulation of quantum dynamics in nonadiabatic systems. Then, by applying the stationary phase approximations to the nonadiabatic path integral, a semiclassical quantization condition, i.e., quantum-classical correspondence, for steady states of nonadiabatic systems is presented as a nonadiabatic trace formula. The present quantum-classical correspondence indicates that a set of primitive hopping periodic orbits, which are invariant under time evolution in the phase space of the slow degree of freedom, should be quantized. The semiclassical quantization is then applied to a simple nonadiabatic model and accurately reproduces exact quantum energy levels.

  5. Steady State Vacuum Ultraviolet Exposure Facility With Automated Calibration Capability

    NASA Technical Reports Server (NTRS)

    Stueber, Thomas J.; Sechkar, Edward A.; Dever, Joyce A.; Banks, Bruce A.

    2000-01-01

    NASA Glenn Research Center at Lewis Field designed and developed a steady state vacuum ultraviolet automated (SSVUVa) facility with in situ VUV intensity calibration capability. The automated feature enables a constant accelerated VUV radiation exposure over long periods of testing without breaking vacuum. This test facility is designed to simultaneously accommodate four isolated radiation exposure tests within the SSVUVa vacuum chamber. Computer-control of the facility for long, term continuous operation also provides control and recording of thermocouple temperatures, periodic recording of VUV lamp intensity, and monitoring of vacuum facility status. This paper discusses the design and capabilities of the SSVUVa facility.

  6. Long Pulse Operation on Tore-Supra: Towards Steady State

    SciTech Connect

    Moreau, P.; Bucalossi, J.; Brosset, C.; Dufour, E.; Loarer, T.; Monier-Garbet, P.; Pegourie, B.; Tsitrone, E.; Basiuk, V.; Bremond, S.; Chantant, M.; Colas, L.; Commaux, N.; Geraud, A.; Guirlet, R.; Gunn, J.; Hertout, P.; Hoang, G. T.; Kazarian, F.; Mazon, D.

    2006-01-15

    The experimental programme of Tore Supra is devoted to the study of technology and physics issues associated to long-duration high performance discharges. This new domain of operation requires simultaneously and in steady state: heat removal capability, particle exhaust, fully non-inductive current drive, advanced technology integration and real time plasma control. The long discharge allows for addressing new time scale physic such as the wall particle retention and erosion. Moreover, the physics of fully non-inductive discharges is full of novelty, namely: the MHD stability, the slow spontaneous oscillation of the central electron temperature or the outstanding inward particle pinch.

  7. Linear modeling of steady-state behavioral dynamics.

    PubMed Central

    Palya, William L; Walter, Donald; Kessel, Robert; Lucke, Robert

    2002-01-01

    The observed steady-state behavioral dynamics supported by unsignaled periods of reinforcement within repeating 2,000-s trials were modeled with a linear transfer function. These experiments employed improved schedule forms and analytical methods to improve the precision of the measured transfer function, compared to previous work. The refinements include both the use of multiple reinforcement periods that improve spectral coverage and averaging of independently determined transfer functions. A linear analysis was then used to predict behavior observed for three different test schedules. The fidelity of these predictions was determined. PMID:11831782

  8. A Spreadsheet Program for Steady-State Temperature Distributions

    SciTech Connect

    Hutchens, G.J.

    2000-11-01

    A desktop program is developed in Microsoft EXCEL using Visual Basic for Applications (VBA) to solve a two-dimensional steady state heat conduction problem with a radiation boundary condition. The resulting partial differential equation and boundary conditions are solved using finite difference techniques and the results are compared with a finite element solution using the commercially available software package MSC/THERMAL. The results from the two methods are found to be within 1 percent. The VBA solution demonstrates how spreadsheet programs, like EXCEL, can be used to solve practical engineering problems with good accuracy.

  9. Paleoenvironmental evolution in a steady state foredeep, Taiwan

    NASA Astrophysics Data System (ADS)

    Nagel, S.; Castelltort, S.; Willett, S. D.; Mouthereau, F.; Lin, A. T.; Granjeon, D.; Kaus, B.

    2012-04-01

    The evolution of mountain ranges to steady state is an important concept in the study of the interrelationships between climate, mountain building and topography. The young and active Taiwan orogeny situated in the western pacific typhoon belt has often been regarded as the type locality of a steady state orogeny, and an ideal case study for tectonic and climatic geomorphology. One prediction of the steady-state theory applied to mountains is the attainment of a constant sediment flux. Our aim in the present study is to estimate the material flux out of the Taiwan orogeny through its evolution. To do so, we have studied the basin wide sedimentary facies distribution at five key stratigraphic horizons to construct detailed paleogeographic maps that include paleobathymetric information and sediment feeding systems. The maps highlight the complicated basin-wide dynamics of sediment dispersal within an evolving foreland basin. The basin physiography changed very little from the middle Miocene (around 12.5 Ma) to the late Pliocene (around 3 Ma); the paleoenvironments were essentially maintained from the passive margin to the foreland basin stage. At 3 Ma, during deposition of the mud-dominated Chinshui Shale, the main depositional basin started to widen and deepen. This clearly marks the increased subsidence associated with the approach of the growing orogen to the east. The basin started to become filled in the late early Pleistocene when a shallow marine wedge in front of the growing orogen initiated to propagate towards the south. We use Dionisos, a forward stratigraphic model, to simulate the evolution of the Taiwan foreland basin in terms of sediment flux (in and out of the basin) towards steady state. We constrain the model with our paleogeographic and sedimentary reconstructions. As an initial input data we utilize the paleoenvironmental maps and a primary sediment supply from the hinterland (topography). The model enables us to look at the long-term basin

  10. Steady state simulator using alternate left right approach

    NASA Astrophysics Data System (ADS)

    Ng, Yit Hoe; Hasan, Mohammad Khatim

    2013-04-01

    Partial difference equation plays important role in simulating a wide variety of science and engineering problem. In this paper, we develop numerical application which implements the iterative methods for steady state simulation and its numerical engine. A new approach names Alternate Left Right is applied onto Successive Overrelaxation (SOR) called as the Alternate Left Right Successive Overrelaxation (ALRSOR) iterative method. The experiment's results are compared amongst SOR and ALRSOR to reveal the performance of these numerical engines. From the results, Alternate Left Right approach successfully increases the speed computation. In conclusion, ALRSOR method performs the fastest amongst the compared method.

  11. Nonequilibrium many-body steady states via Keldysh formalism

    NASA Astrophysics Data System (ADS)

    Maghrebi, Mohammad F.; Gorshkov, Alexey V.

    2016-01-01

    Many-body systems with both coherent dynamics and dissipation constitute a rich class of models which are nevertheless much less explored than their dissipationless counterparts. The advent of numerous experimental platforms that simulate such dynamics poses an immediate challenge to systematically understand and classify these models. In particular, nontrivial many-body states emerge as steady states under nonequilibrium dynamics. While these states and their phase transitions have been studied extensively with mean-field theory, the validity of the mean-field approximation has not been systematically investigated. In this paper, we employ a field-theoretic approach based on the Keldysh formalism to study nonequilibrium phases and phase transitions in a variety of models. In all cases, a complete description via the Keldysh formalism indicates a partial or complete failure of the mean-field analysis. Furthermore, we find that an effective temperature emerges as a result of dissipation, and the universal behavior including the dynamics near the steady state is generically described by a thermodynamic universality class.

  12. Non-steady state tidal heating of Enceladus

    NASA Astrophysics Data System (ADS)

    Shoji, D.; Hussmann, H.; Sohl, F.; Kurita, K.

    2014-06-01

    Enceladus is one of the most geologically active bodies in the Solar System. The satellite's diverse surface suggests that Enceladus was subject to past episodic heating. It is largely probable that the activity of Enceladus is not in a steady state. In order to analyze the non-steady state heating, thermal and orbital coupled calculation is needed because they affect each other. We perform the coupled calculation assuming conductive ice layer and low melting temperature. Although the heating state of Enceladus strongly depends on the rheological parameters used, episodic heating is induced if the Q-value of Saturn is less than 23,000 and Enceladus' core radius is less than 161 km. The duration of one episodic heating cycle is around one hundred million years. The cyclic change in ice thickness is consistent with the origin of a partial ocean which is suggested by plume emissions and diverse surface states of Enceladus. Although the obtained tidal heating rate is smaller than the observed heat flux of a few giga watt, other heating mechanisms involving e.g., liquid water and/or specific chemical reactions may be initiated by the formation of a partial or global subsurface ocean.

  13. Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism

    PubMed Central

    Fleming, R.M.T.; Thiele, I.; Provan, G.; Nasheuer, H.P.

    2010-01-01

    The quantitative analysis of biochemical reactions and metabolites is at frontier of biological sciences. The recent availability of high-throughput technology data sets in biology has paved the way for new modelling approaches at various levels of complexity including the metabolome of a cell or an organism. Understanding the metabolism of a single cell and multi-cell organism will provide the knowledge for the rational design of growth conditions to produce commercially valuable reagents in biotechnology. Here, we demonstrate how equations representing steady state mass conservation, energy conservation, the second law of thermodynamics, and reversible enzyme kinetics can be formulated as a single system of linear equalities and inequalities, in addition to linear equalities on exponential variables. Even though the feasible set is non-convex, the reformulation is exact and amenable to large-scale numerical analysis, a prerequisite for computationally feasible genome scale modelling. Integrating flux, concentration and kinetic variables in a unified constraint-based formulation is aimed at increasing the quantitative predictive capacity of flux balance analysis. Incorporation of experimental and theoretical bounds on thermodynamic and kinetic variables ensures that the predicted steady state fluxes are both thermodynamically and biochemically feasible. The resulting in silico predictions are tested against fluxomic data for central metabolism in E. coli and compare favourably with in silico prediction by flux balance analysis. PMID:20230840

  14. Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism.

    PubMed

    Fleming, R M T; Thiele, I; Provan, G; Nasheuer, H P

    2010-06-01

    The quantitative analysis of biochemical reactions and metabolites is at frontier of biological sciences. The recent availability of high-throughput technology data sets in biology has paved the way for new modelling approaches at various levels of complexity including the metabolome of a cell or an organism. Understanding the metabolism of a single cell and multi-cell organism will provide the knowledge for the rational design of growth conditions to produce commercially valuable reagents in biotechnology. Here, we demonstrate how equations representing steady state mass conservation, energy conservation, the second law of thermodynamics, and reversible enzyme kinetics can be formulated as a single system of linear equalities and inequalities, in addition to linear equalities on exponential variables. Even though the feasible set is non-convex, the reformulation is exact and amenable to large-scale numerical analysis, a prerequisite for computationally feasible genome scale modelling. Integrating flux, concentration and kinetic variables in a unified constraint-based formulation is aimed at increasing the quantitative predictive capacity of flux balance analysis. Incorporation of experimental and theoretical bounds on thermodynamic and kinetic variables ensures that the predicted steady state fluxes are both thermodynamically and biochemically feasible. The resulting in silico predictions are tested against fluxomic data for central metabolism in Escherichia coli and compare favourably with in silico prediction by flux balance analysis. PMID:20230840

  15. Steady-state wear and friction in boundary lubrication studies

    NASA Technical Reports Server (NTRS)

    Loomis, W. R.; Jones, W. R., Jr.

    1980-01-01

    A friction and wear study was made at 20 C to obtain improved reproducibility and reliability in boundary lubrication testing. Ester-base and C-ether-base fluids were used to lubricate a pure iron rider in sliding contact with a rotating M-50 steel disk in a friction and wear apparatus. Conditions included loads of 1/2 and 1 kg and sliding velocities of 3.6 to 18.2 m/min in a dry air atmosphere and stepwise time intervals from 1 to 250 min for wear measurements. The wear rate results were compared with those from previous studies where a single 25 min test period was used. Satisfactory test conditions for studying friction and wear in boundary lubrication for this apparatus were found to be 1 kg load; sliding velocities of 7.1 to 9.1 m/min (50 rpm disk speed); and use of a time stepwise test procedure. Highly reproducible steady-state wear rates and steady-state friction coefficients were determined under boundary conditions. Wear rates and coefficients of friction were constant following initially high values during run-in periods.

  16. Drug Sanctuaries, Low Steady State Viral Loads and Viral Blips.

    SciTech Connect

    Perelson, Alan S.,; Callaway, D.; Pomerantz, R. J.; Chen, H. Y.; Markowitz, M.; Ho, David D.; Di Mascio, M.

    2002-01-01

    Patients on HAART for long periods of time obtain viral loads (VLs) below 50 copies/ml. Ultrasensitive VL assays show that some of these patients obtain a low steady state VL, while others continue to exhibit VL declines to below 5 copies/ml. Low steady states can be explained by two-compartment models that incorporate a drug sanctuary. Interestingly, when patients exhibit continued declines below 50 copies/ml the rate of decline has a half-life of {approx} 6 months, consistent with some estimates of the rate of latent cell decline. Some patients, despite having sustained undetectable VLs show periods of transient viremia (blips). I will present some statistical characterization of the blips observed in a set of 123 patients, suggesting that blips are generated largely by random processes, that blips tend to correspond to periods of a few weeks in which VLs are elevated, and that VL decay from the peak of a blip may have two-phases. Using new results suggesting that the viral burst size, N {approx} 5 x 10{sup 4}, we estimate the number of cells needed to produce a blip.

  17. Steady-state flow properties of amorphous materials

    NASA Astrophysics Data System (ADS)

    Jadhao, Vikram; O'Connor, Thomas; Robbins, Mark

    2015-03-01

    Molecular dynamics (MD) simulations are used to investigate the steady-state shear flow curves of a standard glass model: the bidisperse Lennard-Jones system. For a wide range of temperatures in the neighborhood of the glass transition temperature Tg predicted by the mode coupling theory, we compute the steady-state shear stress and viscosity as a function of the shear rate γ ˙. At temperatures near and above Tg, the stress crosses over from linear Newtonian behavior at low rates to power law shear-thinning at high rates. As T decreases below Tg, the stress shows a plateau, becoming nearly rate-independent at low γ ˙. There is a weak increase in stress that is consistent with Eyring theory for activated flow of a solid. We find that when the strain rate is reduced to extremely low values, Newtonian behavior appears once more. Insights gained from these simulations are applied to the computation of flow curves of a well-established boundary lubricant: squalane. In the elastohydrodynamic regime, squalane responds like a glassy solid with an Eyring-like response, but at low rates it has a relatively small Newtonian viscosity. Supported by the Army Research Laboratory under Grant W911NF-12-2-0022.

  18. Mechanisms of steady-state nucleate pool boiling in microgravity.

    PubMed

    Lee, Ho Sung

    2002-10-01

    Research on nucleate pool boiling in microgravity using R-113 as a working fluid was conducted using a five-second drop tower and five space flights at a/g approximately 10(-4). A 19 x 38-mm flat gold film heater was used that allowed cine camera viewing both from the side and the bottom of the heater. It was concluded that for both subcooled and saturated liquids long-term steady-state pool boiling can take place in reduced gravity, but the effectiveness of the boiling heat transfer appears to depend on the heater geometry and on the size and the properties of fluids. Heat transfer is enhanced at lower heat flux levels and the CHF increases as the subcooling increases. It was found that several mechanisms are responsible for the steady-state nucleate pool boiling in the absence of buoyancy. The mechanisms considered here are defined and summarized as bubble removal, bubble coalescence, thermocapillary flow, bubble migration, and latent heat transport. PMID:12446341

  19. Zeroth law and nonequilibrium thermodynamics for steady states in contact

    NASA Astrophysics Data System (ADS)

    Chatterjee, Sayani; Pradhan, Punyabrata; Mohanty, P. K.

    2015-06-01

    We ask what happens when two nonequilibrium systems in steady state are kept in contact and allowed to exchange a quantity, say mass, which is conserved in the combined system. Will the systems eventually evolve to a new stationary state where a certain intensive thermodynamic variable, like equilibrium chemical potential, equalizes following the zeroth law of thermodynamics and, if so, under what conditions is it possible? We argue that an equilibriumlike thermodynamic structure can be extended to nonequilibrium steady states having short-ranged spatial correlations, provided that the systems interact weakly to exchange mass with rates satisfying a balance condition—reminiscent of a detailed balance condition in equilibrium. The short-ranged correlations would lead to subsystem factorization on a coarse-grained level and the balance condition ensures both equalization of an intensive thermodynamic variable as well as ensemble equivalence, which are crucial for construction of a well-defined nonequilibrium thermodynamics. This proposition is proved and demonstrated in various conserved-mass transport processes having nonzero spatial correlations.

  20. Driven, steady-state RFP computations. [reversed field pinch

    NASA Technical Reports Server (NTRS)

    Dahlburg, J. P.; Montgomery, D.; Doolen, G. D.; Turner, L.

    1988-01-01

    The pseudospectral three-dimensional MHD code of Dahlburg et al. (1986 and 1987) is used to compute the dynamical behavior of a channel of magnetofluid carrying an axial current and magnetic flux. This situation contains the essential MHD behavior of the reversed-field pinch (RFP). An externally imposed electric field is applied to an initially current-free magnetofluid and drives currents that rise and eventually fluctuate about values corresponding to pinch ratios Theta of about 1.3, 2.2, and 4.5. A period of violent turbulence leads to an approximately force-free core, surrounded by an active MHD boundary layer that is not force-free. A steady state is reached that can apparently be sustained indefinitely (for several hundred Alfven transit times or longer). The turbulence level and time variability in the steady state increase with increasing Theta. The average toroidal magnetic field at the wall reverses for Theta = 2.2 and 4.5, but not for Theta = 1.3. Negative toroidal current filaments are observed. The Lundquist numbers are of the order of a few hundred.

  1. Steady state magnetic field configurations for the earth's magnetotail

    SciTech Connect

    Hau, L.N.; Wolf, R.A.; Voigt, G.H. ); Wu, C.C. )

    1989-02-01

    The authors present a two-dimensional, force-balanced magnetic field model in which flux tubes have constant pV{gamma} throughout an extended region of the nightside plasma sheet, between approximately 36 R{sub E} geocentric distance and the region of the inner edge of the plasma sheet. They have thus demonstrated the theoretical existence of a steady state magnetic field configuration that is force-balanced and also consistent with slow, lossless, adiabatic, earthward convection within the limit of the ideal MHD (isotropic pressure, perfect conductivity). The numerical solution was constructed for a two-dimensional magnetosphere with a rectangular magnetopause and nonflaring tail. The primary characteristics of the steady state convection solution are (1) a pressure maximum just tailward of the inner edge of the plasma sheet and (2) a deep, broad minimum in equatorial magnetic field strength B{sub ze}, also just tailward of the inner edge. The results are consistent with Erickson's (1985) convection time sequences, which exhibited analogous pressure peaks and B{sub ze} minima. Observations do not indicate the existence of a B{sub ze} minimum, on the average. They suggest that the configurations with such deep minima in B{sub ze} may be tearing-mode unstable, thus leading to substorm onset in the inner plasma sheet.

  2. Steady-State ALPS for Real-Valued Problems

    NASA Technical Reports Server (NTRS)

    Hornby, Gregory S.

    2009-01-01

    The two objectives of this paper are to describe a steady-state version of the Age-Layered Population Structure (ALPS) Evolutionary Algorithm (EA) and to compare it against other GAs on real-valued problems. Motivation for this work comes from our previous success in demonstrating that a generational version of ALPS greatly improves search performance on a Genetic Programming problem. In making steady-state ALPS some modifications were made to the method for calculating age and the method for moving individuals up layers. To demonstrate that ALPS works well on real-valued problems we compare it against CMA-ES and Differential Evolution (DE) on five challenging, real-valued functions and on one real-world problem. While CMA-ES and DE outperform ALPS on the two unimodal test functions, ALPS is much better on the three multimodal test problems and on the real-world problem. Further examination shows that, unlike the other GAs, ALPS maintains a genotypically diverse population throughout the entire search process. These findings strongly suggest that the ALPS paradigm is better able to avoid premature convergence then the other GAs.

  3. Gas-turbine engine steady-state behavior

    NASA Astrophysics Data System (ADS)

    Curnock, Barry

    A set of graphics with explanations illustrating gas turbine engine steady state behavior are presented. Typical combinations of compressors and nozzles which occur in a gas turbine engine are shown. The basic effect of a nozzle is explained by considering a compressor on a test rig: typical compressor, fan, and turbine characteristics are illustrated. The following are discussed: the degrees of freedom of an aeroengine (the flow and the power); the 'working lines' of components (the locus of the off design steady state operating points of a component plotted on a chart of that components characteristics); bleed and whirl; offtakes; P1 effects (performance changes which modify the basic nondimensional behavior an engine (caused by the effect on Reynolds number levels and on engine mechanical configuration of basic engine inlet pressure level)), and T1 effects (performance changes which modify the basic nondimensional behavior of an engine and are caused by the effects of engine inlet temperature level on Reynolds number level, on engine mechanical configuration and on specific heat level); variable nozzles; and turbojet matching.

  4. Steady State Erosion of Granular Particles by Shear Flow

    NASA Astrophysics Data System (ADS)

    Allen, Benjamin; Kudrolli, Arshad

    2015-11-01

    Despite decades of scientific observation of rivers, streams and laboratory experiments the process of erosion still is not understood. Empirical fits are used to determine when erosion starts with more than an order of magnitude scatter or a shifting power law determining how much material erodes away. In order to study the many body problem of multiple particles we first need to understand the basics of a single particle eroding from a potential well in laminar flow. Using different particle densities and different barrier heights we looked at the onset of erosion and the balance of forces and torques to create a predictive model of when a single particle will erode over a barrier of a given height as a function of shear rate and viscosity. We then create a steady state system in which to image erosion as it happens and simultaneously measure flow velocity and particle movement. Measuring particle movement allows us to determine when steady state erosion occurs and calculate the fluxes and slip velocities at the beginning of the erosion process as we transition from rolling particles to particles suspended in the fluid flow. NSF Grant Number CBET 1335928.

  5. Metformin inhibits mammalian target of rapamycin-dependent translation initiation in breast cancer cells.

    PubMed

    Dowling, Ryan J O; Zakikhani, Mahvash; Fantus, I George; Pollak, Michael; Sonenberg, Nahum

    2007-11-15

    Metformin is used for the treatment of type 2 diabetes because of its ability to lower blood glucose. The effects of metformin are explained by the activation of AMP-activated protein kinase (AMPK), which regulates cellular energy metabolism. Recently, we showed that metformin inhibits the growth of breast cancer cells through the activation of AMPK. Here, we show that metformin inhibits translation initiation. In MCF-7 breast cancer cells, metformin treatment led to a 30% decrease in global protein synthesis. Metformin caused a dose-dependent specific decrease in cap-dependent translation, with a maximal inhibition of 40%. Polysome profile analysis showed an inhibition of translation initiation as metformin treatment of MCF-7 cells led to a shift of mRNAs from heavy to light polysomes and a concomitant increase in the amount of 80S ribosomes. The decrease in translation caused by metformin was associated with mammalian target of rapamycin (mTOR) inhibition, and a decrease in the phosphorylation of S6 kinase, ribosomal protein S6, and eIF4E-binding protein 1. The effects of metformin on translation were mediated by AMPK, as treatment of cells with the AMPK inhibitor compound C prevented the inhibition of translation. Furthermore, translation in MDA-MB-231 cells, which lack the AMPK kinase LKB1, and in tuberous sclerosis complex 2 null (TSC2(-/-)) mouse embryonic fibroblasts was unaffected by metformin, indicating that LKB1 and TSC2 are involved in the mechanism of action of metformin. These results show that metformin-mediated AMPK activation leads to inhibition of mTOR and a reduction in translation initiation, thus providing a possible mechanism of action of metformin in the inhibition of cancer cell growth. PMID:18006825

  6. Characterization of the Prostate-Specific Antigen (PSA) Catalytic Mechanism: A Pre-Steady-State and Steady-State Study

    PubMed Central

    Tomao, Luigi; Sbardella, Diego; Gioia, Magda; Di Masi, Alessandra; Marini, Stefano; Ascenzi, Paolo; Coletta, Massimo

    2014-01-01

    Prostate-specific antigen (PSA), an enzyme of 30 kDa grouped in the kallikrein family is synthesized to high levels by normal and malignant prostate epithelial cells. Therefore, it is the main biomarker currently used for early diagnosis of prostate cancer. Here, presteady-state and steady-state kinetics of the PSA-catalyzed hydrolysis of the fluorogenic substrate Mu-His-Ser-Ser-Lys-Leu-Gln-AMC (spanning from pH 6.5 to pH 9.0, at 37.0°C) are reported. Steady-state kinetics display at every pH value a peculiar feature, represented by an initial “burst” phase of the fluorescence signal before steady-state conditions are taking place. This behavior, which has been already observed in other members of the kallikrein family, suggests the occurrence of a proteolytic mechanism wherefore the acylation step is faster than the deacylation process. This feature allows to detect the acyl intermediate, where the newly formed C-terminal carboxylic acid of the cleaved substrate forms an ester bond with the -OH group of the Ser195 catalytic residue, whereas the AMC product has been already released. Therefore, the pH-dependence of the two enzymatic steps (i.e., acylation and deacylation) has been separately characterized, allowing the determination of pKa values. On this basis, possible residues are tentatively identified in PSA, which might regulate these two steps by interacting with the two portions of the substrate. PMID:25068395

  7. Seeing the talker’s face supports executive processing of speech in steady state noise

    PubMed Central

    Mishra, Sushmit; Lunner, Thomas; Stenfelt, Stefan; Rönnberg, Jerker; Rudner, Mary

    2013-01-01

    Listening to speech in noise depletes cognitive resources, affecting speech processing. The present study investigated how remaining resources or cognitive spare capacity (CSC) can be deployed by young adults with normal hearing. We administered a test of CSC (CSCT; Mishra et al., 2013) along with a battery of established cognitive tests to 20 participants with normal hearing. In the CSCT, lists of two-digit numbers were presented with and without visual cues in quiet, as well as in steady-state and speech-like noise at a high intelligibility level. In low load conditions, two numbers were recalled according to instructions inducing executive processing (updating, inhibition) and in high load conditions the participants were additionally instructed to recall one extra number, which was the always the first item in the list. In line with previous findings, results showed that CSC was sensitive to memory load and executive function but generally not related to working memory capacity (WMC). Furthermore, CSCT scores in quiet were lowered by visual cues, probably due to distraction. In steady-state noise, the presence of visual cues improved CSCT scores, probably by enabling better encoding. Contrary to our expectation, CSCT performance was disrupted more in steady-state than speech-like noise, although only without visual cues, possibly because selective attention could be used to ignore the speech-like background and provide an enriched representation of target items in working memory similar to that obtained in quiet. This interpretation is supported by a consistent association between CSCT scores and updating skills. PMID:24324411

  8. Steady-state kinetic evaluation of the reverse reaction for Escherichia coli 5-enolpyruvoylshikimate-3-phosphate synthase.

    PubMed

    Gruys, K J; Marzabadi, M R; Pansegrau, P D; Sikorski, J A

    1993-08-01

    Recently it has been found that the kinetic mechanism for Escherichia coli 5-enolpyruvoylshikimate-3-phosphate synthase (EPSPS) in the forward direction is random with synergistic binding of substrates and inhibitors (K. J. Gruys, M. C. Walker, and J. A. Sikorski, 1992, Biochemistry 31, 5534). This work, however, did not address the reverse reaction with 5-enolpyruvoylshikimate-3-phosphate (EPSP) and phosphate (Pi) as substrates where a similar question of random versus ordered addition of substrates remained. Previous transient-state kinetic results led to a proposal for an equilibrium-ordered mechanism, where binding of EPSP occurs first followed by Pi (K. S. Anderson, and K. A. Johnson, 1990, Chem. Rev. 90, 1131). Steady-state kinetic results of the reverse reaction presented here suggest that, like the forward reaction, addition of substrates occurs randomly. Initial velocity studies with EPSP and Pi show a normal intersecting pattern in the reciprocal plots, consistent with a random or steady-state-ordered mechanism, but not with equilibrium-ordered addition of substrates. Inhibition of the EPSPS reverse reaction by 5-amino-S3P or the S3P-glyphosate hybrid molecule gave the expected competitive patterns versus EPSP, but mixed noncompetitive patterns versus Pi. These results also disfavor an equilibrium-ordered model, but again are consistent with a random or steady-state-ordered mechanism. A more quantitative mechanistic analysis of the inhibition data to determine the true rather than apparent Ki values provides evidence for a random over a steady-state-ordered addition of substrates. These results in combination with previous findings lead to the conclusion that the mechanism is random addition of EPSP and Pi since it is the only possible model for substrate addition that is consistent with the cumulative data from all kinetic (transient- as well as steady-state) and direct binding studies. PMID:8346911

  9. Adaptation of the Steady-state PERG in Early Glaucoma

    PubMed Central

    Porciatti, Vittorio; Bosse, Brandon; Parekh, Prashant K.; Shif, Olga A.; Feuer, William J.; Ventura, Lori M.

    2013-01-01

    Purpose Previous studies have shown that the onset of high-contrast, fast reversing patterned stimuli induces rapid blood flow increase in retinal vessels in association with slow changes of the steady-state PERG signal. We tested the hypothesis that adaptive PERG changes of normal controls (NC) differed from those of glaucoma suspects (GS) and patients with early manifest glaucoma (EMG). Methods Subjects were 42 GS (SAP MD −0.89 ±1.8 dB), 22 EMG (MD −2.12 ±2.4 dB) with visual acuity of ≥20/20 and 16 age-matched NC from a previous study. The PERG signal was sampled every ~15 s over 4 minutes in response to gratings (1.6 cyc/deg, 100% contrast) reversing 16.28 times/s. Amplitude/phase values of successive PERG samples were fitted with a non-parametric LOWESS smoothing function to retrieve the initial and final values and calculate their difference (delta) and the residual standard deviation around the fitted function (SDr). The magnitude of PERG adaptive change compared to random variability was calculated as log10 of percentage coefficient of variation CoV=100*SDr ÷ |delta|. Grand-average PERGs were also obtained by averaging all samples of the same series. Results The grand-average PERG amplitude (ANOVA, p=0.02), but not phase (ANOVA, p=0.63), decreased with increasing severity of disease. Adaptive changes (log10 (CoV) of PERG amplitude were not significantly associated with disease severity (ANOVA, p=0.27), but adaptive changes (log10 (CoV) of PERG phase were (ANOVA, p=0.037; linear trend, p=0.011). Conclusions The steady-state PERG signal displayed slow adaptive changes over time that could be isolated from random variability. PERG adaptive changes differed from those of grand-average PERGs (corresponding the standard steady-state PERG), thus representing a new source of biological information about retinal ganglion cell function that may have potential in the study of glaucoma and optic nerve diseases. PMID:23429613

  10. Steady-state hydrodynamics of a viscous incompressible fluid with spinning particles.

    PubMed

    Felderhof, B U

    2011-12-21

    The steady-state hydrodynamics of a viscous incompressible fluid with spinning particles is studied on the basis of extended Stokes equations. The profiles of flow velocity and spin velocity in simple flow situations may be used to determine the vortex viscosity and spin viscosity of the molecular liquid or fluid suspension. As an example, one situation studied is the flow generated by a uniform torque density in a planar layer of infinite fluid. The spinning particles drive a nearly uniform flow on either side of the layer, in opposite directions on the two sides. The Green function of the extended Stokes equations is derived. The translational and rotational friction coefficients of a sphere with no-slip boundary conditions, and the corresponding flow profiles, are calculated. PMID:22191899

  11. Locating CVBEM collocation points for steady state heat transfer problems

    USGS Publications Warehouse

    Hromadka, T.V., II

    1985-01-01

    The Complex Variable Boundary Element Method or CVBEM provides a highly accurate means of developing numerical solutions to steady state two-dimensional heat transfer problems. The numerical approach exactly solves the Laplace equation and satisfies the boundary conditions at specified points on the boundary by means of collocation. The accuracy of the approximation depends upon the nodal point distribution specified by the numerical analyst. In order to develop subsequent, refined approximation functions, four techniques for selecting additional collocation points are presented. The techniques are compared as to the governing theory, representation of the error of approximation on the problem boundary, the computational costs, and the ease of use by the numerical analyst. ?? 1985.

  12. Steady-state magma discharge at Etna 1971-81

    NASA Technical Reports Server (NTRS)

    Wadge, G.; Guest, J. E.

    1981-01-01

    Throughout the past decade Mount Etna has been in almost continuous activity and even during periods of repose incandescent lava has often been visible in at least one of the summit vents. Using observations by Italian, British and French volcanological teams, the volumes of lava produced by each eruption from 1971 to July 1981 have been estimated. The computed output of magma for this period approximates to a rate of 0.7 cu m/s. This is compared with the output rate estimates for Etna's historic past. The steady-state nature of the output during the past decade has implications for the interpretation of the volcano's internal plumbing and the petrology of its lavas, and the assumption that this state will be maintained allows a discussion of the timing and magnitude of future eruptions.

  13. Quasi-steady-state analysis of coupled flashing ratchets

    NASA Astrophysics Data System (ADS)

    Levien, Ethan; Bressloff, Paul C.

    2015-10-01

    We perform a quasi-steady-state (QSS) reduction of a flashing ratchet to obtain a Brownian particle in an effective potential. The resulting system is analytically tractable and yet preserves essential dynamical features of the full model. We first use the QSS reduction to derive an explicit expression for the velocity of a simple two-state flashing ratchet. In particular, we determine the relationship between perturbations from detailed balance, which are encoded in the transitions rates of the flashing ratchet, and a tilted-periodic potential. We then perform a QSS analysis of a pair of elastically coupled flashing ratchets, which reduces to a Brownian particle moving in a two-dimensional vector field. We suggest that the fixed points of this vector field accurately approximate the metastable spatial locations of the coupled ratchets, which are, in general, impossible to identify from the full system.

  14. [Auditory steady-state responses--the state of art].

    PubMed

    Szymańska, Anna; Gryczyński, Maciej; Pajor, Anna

    2010-01-01

    The auditory steady-state responses (ASSR) is quite a new method of electrophysiological threshold estimation with no clinical standards. It was the aim of this study to review practical and theoretical thesis of ASSR and mention recent recommendations and achievements of this technique. The most common application of ASSR is diagnosis of hearing loss in children together with ABR test. In this paper we mentioned information about influence of physiological factors (age, sex, state of arousal, handedness) and type of recording technique (electrodes placement, air and bone stimulation, occlusion effect, amplitude and frequency stimulation, multiple or single frequency stimulation, dichotic and monotic recording technique and type of hearing loss) on ASSR. We conclude that putting ASSR in clinical use as an standardized method it is necessary to do research with numerous groups of patients using the same equipment and parameters of tests. PMID:21166136

  15. Steady state asymmetric planetary electrical induction. [by solar wind

    NASA Technical Reports Server (NTRS)

    Horning, B. L.; Schubert, G.

    1974-01-01

    An analytic solution is presented for the steady state electric and magnetic fields induced by the motional electric field of the solar wind in the atmosphere or interior of a planet that is asymmetrically surrounded by solar wind plasma. The electrically conducting ionosphere or interior must be in direct electrical contact with the solar wind over the day side of the planet. The conducting region of the planet is modeled by a sphere or a spherical shell of arbitrarily stratified electrical conductivity. A monoconducting cylindrical cavity is assumed to extend downstream on the night side of the planet. The solar wind is assumed to be highly conducting so that the induced fields are confined to the planet and cavity. Induced currents close as sheet currents at the solar wind-cavity and solar wind-planet interfaces. Numerical evaluations of the analytic formulas are carried out for a uniformly conducting spherical model.

  16. Steady States in SIRS Epidemical Model of Mobile Individuals

    NASA Astrophysics Data System (ADS)

    Zhang, Duan-Ming; He, Min-Hua; Yu, Xiao-Ling; Pan, Gui-Jun; Sun, Hong-Zhang; Su, Xiang-Ying; Sun, Fan; Yin, Yan-Ping; Li, Rui; Liu, Dan

    2006-01-01

    We consider an epidemical model within socially interacting mobile individuals to study the behaviors of steady states of epidemic propagation in 2D networks. Using mean-field approximation and large scale simulations, we recover the usual epidemic behavior with critical thresholds δc and pc below which infectious disease dies out. For the population density δ far above δc, it is found that there is linear relationship between contact rate λ and the population density δ in the main. At the same time, the result obtained from mean-field approximation is compared with our numerical result, and it is found that these two results are similar by and large but not completely the same.

  17. Steady state model of an industrial FCC unit

    SciTech Connect

    Lopez-Isunza, F.; Ancheyta-Juarez, J.

    1996-12-31

    A reactor model has been developed to simulate the steady-state of an industrial fluid catalytic cracking unit using a three-lump kinetic expression with parameters estimated from experiments in a microactivity test reactor. The model considers a transported bed reactor (riser) where gas-oil and catalyst are in contact to perform the endothermic cracking reactions, interacting with a two-phase moving bed regenerator with recirculation where the combustion of the coke deposited on the catalyst takes place. The model is used to find best operating conditions for maximizing gasoline yield in terms of gas-oil feed temperature (To) and recycled catalyst to gas-oil ratio (C/O). 12 refs., 4 figs.

  18. Steady State Temperature Profile in a Cylinder Heated by Microwaves

    NASA Technical Reports Server (NTRS)

    Jackson, H. W.; Barmatz, M.; Wagner, P.

    1995-01-01

    A new theory has been developed to calculate the steady state temperature profile in a cylindrical sample positioned along the entire axis of a cylindrical microwave cavity. Temperature profiles where computed for- alumina rods of various radii contained in a cavity excite in one of the TM(sub OnO) modes with n = 1, 2 or 3. Calculations where also performed with a concentric outer cylindrical tube surrounding the rod to investigate hybrid heating. The parameters studies of the sample center and surface temperature where performed as a function of the total power transmitted into the cavity. Also, the total hemispherical emissivity was varied at boundaries of the rod, surrounding tube, and cavity walls. The result are discussed in the context of controlling the average rod temperature and the temperature distribution in the rod during microwave processing.

  19. Steady-State Density Functional Theory for Finite Bias Conductances.

    PubMed

    Stefanucci, G; Kurth, S

    2015-12-01

    In the framework of density functional theory, a formalism to describe electronic transport in the steady state is proposed which uses the density on the junction and the steady current as basic variables. We prove that, in a finite window around zero bias, there is a one-to-one map between the basic variables and both local potential on as well as bias across the junction. The resulting Kohn-Sham system features two exchange-correlation (xc) potentials, a local xc potential, and an xc contribution to the bias. For weakly coupled junctions the xc potentials exhibit steps in the density-current plane which are shown to be crucial to describe the Coulomb blockade diamonds. At small currents these steps emerge as the equilibrium xc discontinuity bifurcates. The formalism is applied to a model benzene junction, finding perfect agreement with the orthodox theory of Coulomb blockade. PMID:26571349

  20. The thermal vacuum for non-equilibrium steady state

    NASA Astrophysics Data System (ADS)

    Imai, Ryosuke; Kuwahara, Yukiro; Nakamura, Yusuke; Yamanaka, Yoshiya

    Our purpose is to construct a theoretical description of non-equilibrium steady state (NESS), employing thermo field dynamics (TFD). TFD is the operator-based formalism of thermal quautum field theory, where every degree of freedom is doubled and thermal averages are given by expectation values of the thermal vacuum. To specify the thermal vacuum for NESS is a non-trivial issue, and we attempt it on the analogy between the superoperator formalism and TFD. Using the thermal vacuum thus obtained, we analyze the NESS which is realized in the two-reservoir model. It will be shown that the NESS vacuum of the model coincides with the fixed point solutions of the quantum transport equation derived by the self-consistent renormalization of the self-energy in non-equilibrium TFD.

  1. Entropy Production and Non-Equilibrium Steady States

    NASA Astrophysics Data System (ADS)

    Suzuki, Masuo

    2013-01-01

    The long-term issue of entropy production in transport phenomena is solved by separating the symmetry of the non-equilibrium density matrix ρ(t) in the von Neumann equation, as ρ(t) = ρs(t) + ρa(t) with the symmetric part ρs(t) and antisymmetric part ρa(t). The irreversible entropy production (dS/dt)irr is given in M. Suzuki, Physica A 390(2011)1904 by (dS/dt)irr = Tr( {H}(dρ s{(t)/dt))}/T for the Hamiltonian {H} of the relevant system. The general formulation of the extended von Neumann equation with energy supply and heat extraction is reviewed from the author's paper (M. S.,Physica A391(2012)1074). irreversibility; entropy production; transport phenomena; electric conduction; thermal conduction; linear response; Kubo formula; steady state; non-equilibrium density matrix; energy supply; symmetry-separated von Neumann equation; unboundedness.

  2. Steady-state plasma transition in the Venus ionosheath

    NASA Technical Reports Server (NTRS)

    Perez-De-tejada, H.; Intriligator, D. S.; Strangeway, R. J.

    1991-01-01

    The results of an extended analysis of the plasma and electric field data of the Pioneer Venus Orbiter (PVO) are presented. The persistent presence of a plasma transition embedded in the flanks of the Venus ionosheath between the bow shock and the ionopause is reported. This transition is identified by the repeated presence of characteristic bursts in the 30 kHz channel of the electric field detector of the PVO. The observed electric field signals coincide with the onset of different plasma conditions in the inner ionosheath where more rarified plasma fluxes are measured. The repeated identification of this intermediate ionosheath transition in the PVO data indicates that it is present as a steady state feature of the Venus plasma environment. The distribution of PVO orbits in which the transition is observed suggests that it is more favorably detected in the vicinity of and downstream from the terminator.

  3. Fueling Requirements for Steady State high butane current fraction discharges

    SciTech Connect

    R.Raman

    2003-10-08

    The CT injector originally used for injecting CTs into 1T toroidal field discharges in the TdeV tokamak was shipped PPPL from the Affiliated Customs Brokers storage facility in Montreal during November 2002. All components were transported safely, without damage, and are currently in storage at PPPL, waiting for further funding in order to begin advanced fueling experiments on NSTX. The components are currently insured through the University of Washington. Several technical presentations were made to investigate the feasibility of the CT injector installation on NSTX. These technical presentations, attached to this document, were: (1) Motivation for Compact Toroida Injection in NSTX; (2) Assessment of the Engineering Feasibility of Installing CTF-II on NSTX; (3) Assessment of the Cost for CT Installation on NSTX--A Peer Review; and (4) CT Fueling for NSTX FY 04-08 steady-state operation needs.

  4. NASA Lewis Steady-State Heat Pipe Code Architecture

    NASA Technical Reports Server (NTRS)

    Mi, Ye; Tower, Leonard K.

    2013-01-01

    NASA Glenn Research Center (GRC) has developed the LERCHP code. The PC-based LERCHP code can be used to predict the steady-state performance of heat pipes, including the determination of operating temperature and operating limits which might be encountered under specified conditions. The code contains a vapor flow algorithm which incorporates vapor compressibility and axially varying heat input. For the liquid flow in the wick, Darcy s formula is employed. Thermal boundary conditions and geometric structures can be defined through an interactive input interface. A variety of fluid and material options as well as user defined options can be chosen for the working fluid, wick, and pipe materials. This report documents the current effort at GRC to update the LERCHP code for operating in a Microsoft Windows (Microsoft Corporation) environment. A detailed analysis of the model is presented. The programming architecture for the numerical calculations is explained and flowcharts of the key subroutines are given

  5. Taylor dispersion in equilibrium gradient focusing at steady state.

    PubMed

    Ivory, Cornelius F

    2015-03-01

    An analytic expression is presented for the effective dispersion coefficient in the case where a solute is focused in a parabolic flow against a linear gradient in a restoring force. This expression was derived by employing a minor variation on the method of moments used by Aris in his development of the dispersion coefficients for a time-dependent, isocratic system. In the present case, dispersion is controlled by two dimensionless groups, a Peclet number which is proportional to the parabolic component of the flow, and a gradient number which is proportional to the slope of the restoring force. These results confirm that the Aris-Taylor expression for the dispersion coefficient should not be applied in cases where a solute is focused to a stationary steady state. PMID:25521436

  6. Nuclide Importance and the Steady-State Burnup Equation

    SciTech Connect

    Sekimoto, Hiroshi; Nemoto, Atsushi

    2000-05-15

    Conventional methods for evaluating some characteristic values of nuclides relating to burnup in a given neutron spectrum are reviewed in a mathematically systematic way, and a new method based on the importance theory is proposed. In this method, these characteristic values of a nuclide are equivalent to the importances of the nuclide. By solving the equation adjoint to the steady-state burnup equation with a properly chosen source term, the importances for all nuclides are obtained simultaneously.The fission number importance, net neutron importance, fission neutron importance, and absorbed neutron importance are evaluated and discussed. The net neutron importance is a measure directly estimating neutron economy, and it can be evaluated simply by calculating the fission neutron importance minus the absorbed neutron importance, where only the absorbed neutron importance depends on the fission product. The fission neutron importance and absorbed neutron importance are analyzed separately, and detailed discussions of the fission product effects are given for the absorbed neutron importance.

  7. Typical pure nonequilibrium steady states and irreversibility for quantum transport.

    PubMed

    Monnai, Takaaki; Yuasa, Kazuya

    2016-07-01

    It is known that each single typical pure state in an energy shell of a large isolated quantum system well represents a thermal equilibrium state of the system. We show that such typicality holds also for nonequilibrium steady states (NESS's). We consider a small quantum system coupled to multiple infinite reservoirs. In the long run, the total system reaches a unique NESS. We identify a large Hilbert space from which pure states of the system are to be sampled randomly and show that the typical pure states well describe the NESS. We also point out that the irreversible relaxation to the unique NESS is important to the typicality of the pure NESS's. PMID:27575115

  8. Waveguides formed by quasi-steady-state photorefractive spatial solitons

    NASA Astrophysics Data System (ADS)

    Morin, Matthew; Duree, Galen; Salamo, Gregory; Segev, Mordechai

    1995-10-01

    We show that a quasi-steady-state photorefractive spatial soliton forms a waveguide structure in the bulk of a photorefractive material. Although the optically induced waveguide is formed by a very low-power (microwatts) soliton beam, it can guide a powerful (watt) beam of a longer wavelength at which the medium is nonphotosensitive. Furthermore, the waveguide survives, either in the dark or when guiding the longer-wavelength beam, for a long time after the soliton beam is turned off. We take advantage of the solitons' property of evolution from a relatively broad input beam into a narrow channel and show that the soliton induces a tapered waveguide (an optical funnel) that improves the coupling efficiency of light into the waveguiding structure.

  9. Non-Equilibrium Steady States for Chains of Four Rotors

    NASA Astrophysics Data System (ADS)

    Cuneo, N.; Eckmann, J.-P.

    2016-07-01

    We study a chain of four interacting rotors (rotators) connected at both ends to stochastic heat baths at different temperatures. We show that for non-degenerate interaction potentials the system relaxes, at a stretched exponential rate, to a non-equilibrium steady state (NESS). Rotors with high energy tend to decouple from their neighbors due to fast oscillation of the forces. Because of this, the energy of the central two rotors, which interact with the heat baths only through the external rotors, can take a very long time to dissipate. By appropriately averaging the oscillatory forces, we estimate the dissipation rate and construct a Lyapunov function. Compared to the chain of length three (considered previously by C. Poquet and the current authors), the new difficulty with four rotors is the appearance of resonances when both central rotors are fast. We deal with these resonances using the rapid thermalization of the two external rotors.

  10. Computational complexity of nonequilibrium steady states of quantum spin chains

    NASA Astrophysics Data System (ADS)

    Marzolino, Ugo; Prosen, Tomaž

    2016-03-01

    We study nonequilibrium steady states (NESS) of spin chains with boundary Markovian dissipation from the computational complexity point of view. We focus on X X chains whose NESS are matrix product operators, i.e., with coefficients of a tensor operator basis described by transition amplitudes in an auxiliary space. Encoding quantum algorithms in the auxiliary space, we show that estimating expectations of operators, being local in the sense that each acts on disjoint sets of few spins covering all the system, provides the answers of problems at least as hard as, and believed by many computer scientists to be much harder than, those solved by quantum computers. We draw conclusions on the hardness of the above estimations.

  11. Building steady-state simulators via hierarchical feedback decomposition

    SciTech Connect

    Rouquette, N.

    1996-12-31

    In recent years, compositional modeling and self-explanatory simulation techniques have simplified the process of building dynamic simulators of physical systems. Building steady-state simulators is, conceptually, a simpler task consisting in solving a set algebraic equations. This simplicity hides delicate technical issues of convergence and search-space size due to the potentially large number of unknown parameters. We present an automated technique for reducing the dimensionality of the problem by (1) automatically identifying feedback loops (a generally NP-complete problem), (2) hierarchically decomposing the set of equations in terms of feedback loops, and (3) structuring a simulator where equations are solved either serially without search or in isolation within a feedback loop. This paper describes the key algorithms and the results of their implementation on building simulators for a two-phase evaporator loop system across multiple combinations of causal and non-causal approximations.

  12. Dust remobilization in fusion plasmas under steady state conditions

    NASA Astrophysics Data System (ADS)

    Tolias, P.; Ratynskaia, S.; De Angeli, M.; De Temmerman, G.; Ripamonti, D.; Riva, G.; Bykov, I.; Shalpegin, A.; Vignitchouk, L.; Brochard, F.; Bystrov, K.; Bardin, S.; Litnovsky, A.

    2016-02-01

    The first combined experimental and theoretical studies of dust remobilization by plasma forces are reported. The main theoretical aspects of remobilization in fusion devices under steady state conditions are analyzed. In particular, the dominant role of adhesive forces is highlighted and generic remobilization conditions—direct lift-up, sliding, rolling—are formulated. A novel experimental technique is proposed, based on controlled adhesion of dust grains on tungsten samples combined with detailed mapping of the dust deposition profile prior and post plasma exposure. Proof-of-principle experiments in the TEXTOR tokamak and the EXTRAP-T2R reversed-field pinch are presented. The versatile environment of the linear device Pilot-PSI allowed for experiments with different magnetic field topologies and varying plasma conditions that were complemented with camera observations.

  13. Modelling of pulsed and steady-state DEMO scenarios

    NASA Astrophysics Data System (ADS)

    Giruzzi, G.; Artaud, J. F.; Baruzzo, M.; Bolzonella, T.; Fable, E.; Garzotti, L.; Ivanova-Stanik, I.; Kemp, R.; King, D. B.; Schneider, M.; Stankiewicz, R.; Stępniewski, W.; Vincenzi, P.; Ward, D.; Zagórski, R.

    2015-07-01

    Scenario modelling for the demonstration fusion reactor (DEMO) has been carried out using a variety of simulation codes. Two DEMO concepts have been analysed: a pulsed tokamak, characterized by rather conventional physics and technology assumptions (DEMO1) and a steady-state tokamak, with moderately advanced physics and technology assumptions (DEMO2). Sensitivity to impurity concentrations, radiation, and heat transport models has been investigated. For DEMO2, the impact of current driven non-inductively by neutral beams has been studied by full Monte Carlo simulations of the fast ion distribution. The results obtained are a part of a more extensive research and development (R&D) effort carried out in the EU in order to develop a viable option for a DEMO reactor, to be adopted after ITER for fusion energy research.

  14. Electrically Evoked Auditory Steady State Responses in Cochlear Implant Users

    PubMed Central

    Wouters, Jan

    2009-01-01

    Auditory steady state responses are neural potentials in response to repeated auditory stimuli. This study shows that electrically evoked auditory steady state responses (EASSRs) to low-rate pulse trains can be reliably recorded by electrodes placed on the scalp of a cochlear implant (CI) user and separated from the artifacts generated by the electrical stimulation. Response properties are described, and the predictive value of EASSRs for behaviorally hearing thresholds is analyzed. For six users of a Cochlear Nucleus CI, EASSRs to symmetric biphasic pulse trains with rates between 35 and 47 Hz were recorded with seven scalp electrodes. The influence of various stimulus parameters was assessed: pulse rate, stimulus intensity, monopolar or bipolar stimulation mode, and presentation of either one pulse train on one electrode or interleaved pulse trains with different pulse rates on multiple electrodes. To compensate for the electrical artifacts caused by the stimulus pulses and radio frequency transmission, different methods of artifact reduction were employed. The validity of the recorded responses was confirmed by recording on–off responses, determination of response latency across the measured pulse rates, and comparison of amplitude growth of stimulus artifact and response amplitude. For stimulation in the 40 Hz range, response latencies of 35.6 ms (SD = 5.3 ms) were obtained. Responses to multiple simultaneous stimuli on different electrodes can be evoked, and the electrophysiological thresholds determined from EASSR amplitude growth in the 40 Hz range correlate well with behaviorally determined threshold levels for pulse rates of 41 Hz. PMID:20033246

  15. Steady-state creep of metal-ceramic multilayered materials

    SciTech Connect

    Shen, Y.L.; Suresh, S.

    1996-04-01

    A general approach is presented for analyzing the steady-state creep response and its underlying mechanisms in metal-ceramic multilayers subjected to monotonic or cyclic variations in temperature. This approach combines the plate or beam theories of continuum mechanics with the mechanism-based classical constitutive equations for steady-state creep. The method is capable of predicting the evolution of overall curvature in the layered solid, the generation of thermal stresses within each layer, and the dominant deformation mechanisms at any through-thickness location of each layer at any instant of time or temperature for prescribed layer geometries, thermo-mechanical properties of the constituent layers, and the applied thermal history. Simulations are presented for Al-Al{sub 2}O{sub 3} bilayer and Al{sub 2}O{sub 3}-Al-Al{sub 2}O{sub 3} trilayer model systems. The predicted results are compared with appropriate experimental measurements for the bilayers subjected to thermal cycling up to 450 C. It is found that the multilayer creep calculations capture the essential features of cyclic thermal response; the extent of stress relaxation in the Al layer, however, is somewhat overestimated, especially at higher temperatures. Possible reasons for such discrepancy are discussed, and the significance and limitations of the overall approach are highlighted. The effects of the rate of heating or cooling on deformation, and the correlations between the present creep analyses and rate-independent elastoplastic formulations for multilayers are also considered. The influence of layer thickness on the evolution of creep mechanisms is also examined from thick multilayers to the limiting case of a thin metallic film on a brittle substrate.

  16. Steady state plasma operation in RF dominated regimes on EAST

    SciTech Connect

    Zhang, X. J.; Zhao, Y. P.; Gong, X. Z.; Hu, C. D.; Liu, F. K.; Hu, L. Q.; Wan, B. N. Li, J. G.

    2015-12-10

    Significant progress has recently been made on EAST in the 2014 campaign, including the enhanced CW H&CD system over 20MW heating power (LHCD, ICRH and NBI), more than 70 diagnostics, ITER-like W-monoblock on upper divertor, two inner cryo-pumps and RMP coils, enabling EAST to investigate long pulse H mode operation with dominant electron heating and low torque to address the critical issues for ITER. H-mode plasmas were achieved by new H&CD system or 4.6GHz LHCD alone for the first time. Long pulse high performance H mode has been obtained by LHCD alone up to 28s at H{sub 98}∼1.2 or by combing of ICRH and LHCD, no or small ELM was found in RF plasmas, which is essential for steady state operation in the future Tokamak. Plasma operation in low collision regimes were implemented by new 4.6GHz LHCD with core Te∼4.5keV. The non-inductive scenarios with high performance at high bootstrap current fraction have been demonstrated in RF dominated regimes for long pulse operation. Near full non-inductive CD discharges have been achieved. In addition, effective heating and decoupling method under multi-transmitter for ICRF system were developed in this campaign, etc. EAST could be in operation with over 30MW CW heating and current drive power (LHCD ICRH NBI and ECRH), enhanced diagnostic capabilities and full actively-cooled metal wall from 2015. It will therefore allow to access new confinement regimes and to extend these regimes towards to steady state operation.

  17. Steady-state spectroscopy of new biological probes

    NASA Astrophysics Data System (ADS)

    Abou-Zied, Osama K.

    2007-02-01

    The steady state absorption and fluorescence spectroscopy of 2-(2'-hydroxyphenyl)benzoxazole (HBO) and (2,2'-bipyridine)-3,3'-diol (BP(OH) II) were studied here free in solution and in human serum albumin (HSA) in order to test their applicability as new biological probes. HBO and BP(OH) II are known to undergo intramolecular proton transfers in the excited state. Their absorption and fluorescence spectra are sensitive to environmental change from hydrophilic to hydrophobic, thus allowing the opportunity to use them as environment-sensitive probes. The effect of water on the steady state spectra of the two molecules also shows unique features which may position them as water sensors in biological systems. For HBO in buffer, fluorescence is only due to the syn-keto tautomer, whereas in HSA the fluorescence is due to four species in equilibrium in the excited state (the syn-keto tautomer, the anti-enol tautomer, the solvated syn-enol tautomer, and the anion species of HBO). Analysis of the fluorescence spectra of HBO in HSA indicates that HBO is exposed to less water in the HBO:HSA complex. For the BP(OH) II molecule, unique absorption due to water was observed in the spectral region of 400-450 nm. This absorption decreases in the presence of HSA due to less accessibility to water as a result of binding to HSA. Fluorescence of BP(OH) II is due solely to the di-keto tautomer after double proton transfer in the excited state. The fluorescence peak of BP(OH) II shows a red-shift upon HSA recognition which is attributed to the hydrophobic environment inside the binding site of HSA. We discuss also the effect of probe-inclusion inside well-defined hydrophobic cavities of cyclodextrins.

  18. Torque-balanced Steady States of Single-component Plasmas

    NASA Astrophysics Data System (ADS)

    Danielson, James R.

    2005-10-01

    Penning-Malmberg traps provide an excellent method to confine single-component plasmas. Specially tailored, high-density plasmas can be created in these devices by the application of azimuthally phased rf fields [i.e., the so-called ``rotating wall'' (RW) technique]. Recently, we reported a new regime of RW compression of electron (or positron) plasmas ootnotetextJ. R. Danielson and C. M. Surko, Phys. Rev. Lett. 95, 035001 (2005).. In this ``strong-drive'' regime, plasmas are compressed until the E x B rotation frequency, φE (with φE plasma density) approaches the applied frequency, φRW. Good compression is achieved over a broad range of RW frequencies, without the need to tune to a mode in the plasma. The resulting steady-state density is found to be only weakly dependent on the applied RW amplitude. A simple nonlinear dynamical model explains these observations as convergence to an attracting fixed point - the torque-balanced steady state. The applied RW torque, τRW, can be understood as a generic, linear coupling between the plasma and the Debye- shielded RW electric field. The thermodynamic equations ootnotetextT. M. O'Neil and D. H. E. Dubin, Phys. Plasmas 5, 2163 (1998). governing the evolution will be discussed and compared to the experiments. This new regime facilitates improved compression and colder plasmas (since less transport means less plasma heating). Factors limiting the utility of the technique and applications will be discussed, including the development of a multicell trap to confine large numbers (i.e., N >=10^ 12) of positrons ootnotetextC. M. Surko and R. G. Greaves, Phys. Plasmas 11, 2333 (2004)..

  19. A mathematical model of pan evaporation under steady state conditions

    NASA Astrophysics Data System (ADS)

    Lim, Wee Ho; Roderick, Michael L.; Farquhar, Graham D.

    2016-09-01

    In the context of changing climate, global pan evaporation records have shown a spatially-averaged trend of ∼ -2 to ∼ -3 mm a-2 over the past 30-50 years. This global phenomenon has motivated the development of the "PenPan" model (Rotstayn et al., 2006). However, the original PenPan model has yet to receive an independent experimental evaluation. Hence, we constructed an instrumented US Class A pan at Canberra Airport (Australia) and monitored it over a three-year period (2007-2010) to uncover the physics of pan evaporation under non-steady state conditions. The experimental investigations of pan evaporation enabled theoretical formulation and parameterisation of the aerodynamic function considering the wind, properties of air and (with or without) the bird guard effect. The energy balance investigation allowed for detailed formulation of the short- and long-wave radiation associated with the albedos and the emissivities of the pan water surface and the pan wall. Here, we synthesise and generalise those earlier works to develop a new model called the "PenPan-V2" model for application under steady state conditions (i.e., uses a monthly time step). Two versions (PenPan-V2C and PenPan-V2S) are tested using pan evaporation data available across the Australian continent. Both versions outperformed the original PenPan model with better representation of both the evaporation rate and the underlying physics of a US Class A pan. The results show the improved solar geometry related calculations (e.g., albedo, area) for the pan system led to a clear improvement in representing the seasonal cycle of pan evaporation. For general applications, the PenPan-V2S is simpler and suited for applications including an evaluation of long-term trends in pan evaporation.

  20. Inhibition of protein translation as a novel mechanism for prostaglandin E2 regulation of cell functions

    PubMed Central

    Okunishi, Katsuhide; DeGraaf, Angela J.; Zasłona, Zbigniew; Peters-Golden, Marc

    2014-01-01

    Prostaglandin E2 (PGE2) regulates numerous biological processes by modulating transcriptional activation, epigenetic control, proteolysis, and secretion of various proteins. Scar formation depends on fibroblast elaboration of matrix proteins such as collagen, and this process is strongly suppressed by PGE2 through activation of cAMP-dependent protein kinase A (PKA). However, the actual mechanism by which PGE2-PKA signaling inhibits collagen expression in fibroblasts has never been delineated, and that was the objective of this study. PGE2 unexpectedly induced a rapid reduction in procollagen I protein expression in adult lung fibroblasts, with a half-maximum effect at 1.5 h. This effect reflected its inhibition of translation rather than transcription. Global protein synthesis was also inhibited by PGE2. This action was mediated by PKA and involved both activation of ribosomal protein (rpS6) and suppression of mammalian target of rapamycin (mTOR). Similar effects of PGE2 were demonstrated in mouse peritoneal macrophages (PMs). These findings identify inhibition of translation as a new mechanism by which PGE2 regulates cellular function and a novel example of translational inhibition mediated by opposing actions on two distinct translational control pathways. Translational inhibition would be expected to contribute to dynamic alterations in cell function that accompany the changing PGE2 levels observed in disease states and with various pharmacotherapies.—Okunishi K., DeGraaf, A. J., Zasłona, Z., Peters-Golden, M. Inhibition of protein translation as a novel mechanism for prostaglandin E2 regulation of cell functions. PMID:24072780

  1. Pre-steady-state studies of the adenosine triphosphatase activity of coupled submitochondrial particles. Regulation by ADP.

    PubMed

    Martins, O B; Tuena de Gómez-Puyou, M; Gómez-Puyou, A

    1988-09-20

    ATPase activities were measured in 10 mM MgCl2, 5 mM ATP, 1 mM ADP, and 1 microM FCCP with submitochondrial particles from bovine heart that had been stimulated by delta mu H+-forming substrates and with particles whose natural inhibitor protein was partially removed by heating. The activities were not linear with time. With both particles, the rate of ATP hydrolysis in the 7-fold greater than that in the steady state. Pre-steady-state and steady-state kinetic studies showed that the decrease of ATPase activity was due to the binding of ADP in a high-affinity site of the enzyme (K0.5 of 10 microM). Inhibition of ATP hydrolysis was accompanied by the binding of approximately 1 mol of ADP/mol of particulate F1; 10 microM ADP gave half-maximal binding. ADP could be replaced by IDP, but with an affinity 50-fold lower (K0.5 of 0.5 mM). Maximal inhibition by ADP and IDP was achieved in less than 5 s. Inhibition was enhanced by uncouplers. Even in the presence of pyruvate kinase and phosphoenolpyruvate, the rates of hydrolysis were about 2.5-fold higher in the first seconds of reaction than in the steady state. This decrease of ATPase activity also correlated with the binding of nearly 1 mol of ADP/mol of F1. This inhibitory ADP remained bound to the enzyme after several thousand turnovers. Apparently, it is possible to observe maximal rates of hydrolysis only in the first few catalytic cycles of the enzyme. PMID:2974725

  2. Critical Concavity of a Drainage Basin for Steady-State

    NASA Astrophysics Data System (ADS)

    Byun, Jongmin; Paik, Kyungrock

    2015-04-01

    Longitudinal profiles of natural streams are known to show concave forms. Saying A as drainage area, channel gradient S can be expressed as the power-law, S≈A-θ (Flint, 1974), which is one of the scale-invariant features of drainage basin. According to literature, θ of most natural streams falls into a narrow range (0.4 < θ < 0.7) (Tucker and Whipple, 2002). It leads to fundamental questions: 'Why does θ falls into such narrow range?' and 'How is this related with other power-law scaling relationships reported in natural drainage basins?' To answer above questions, we analytically derive θ for a steady-state drainage basin following Lane's equilibrium (Lane, 1955) throughout the corridor and named this specific case as the 'critical concavity'. In the derivation, sediment transport capacity is estimated by unit stream power model (Yang, 1976), yielding a power function of upstream area. Stability of channel at a local point occurs when incoming flux equals outgoing flux at the point. Therefore, given the drainage at steady-state where all channel beds are stable, the exponent of the power function should be zero. From this, we can determine the critical concavity. Considering ranges of variables associated in this derivation, critical concavity cannot be resolved as a single definite value, rather a range of critical concavity is suggested. This range well agrees with the widely reported range of θ (0.4 < θ < 0.7) in natural streams. In this theoretical study, inter-relationships between power-laws such as hydraulic geometry (Leopold and Maddock, 1953), dominant discharge-drainage area (Knighton et al., 1999), and concavity, are coupled into the power-law framework of stream power sediment transport model. This allows us to explore close relationships between their power-law exponents: their relative roles and sensitivity. Detailed analysis and implications will be presented. References Flint, J. J., 1974, Stream gradient as a function of order, magnitude

  3. Regulatory T cell homeostasis: steady-state maintenance and modulation during inflammation

    PubMed Central

    Smigiel, Kate S.; Srivastava, Shivani; Stolley, J. Michael; Campbell, Daniel J.

    2014-01-01

    Summary Regulatory T (Treg) cells play a vital role in the prevention of autoimmunity and the maintenance of self-tolerance but also have an active role in inhibiting immune responses during viral, bacterial and parasitic infections. Whereas excessive Treg activity can lead to immunodeficiency, chronic infection and cancer, too little Treg activity results in autoimmunity and immunopathology, and impairs the quality of pathogen-specific responses. Recent studies have helped define the homeostatic mechanisms that support the diverse pool of peripheral Treg cells under steady-state conditions, and delineate how the abundance and function of Treg cells changes during inflammation. These findings are highly relevant for developing effective strategies to manipulate Treg cell activity to promote allograft tolerance and treat autoimmunity, chronic infection and cancer. PMID:24712458

  4. Flavour fields in steady state: stress tensor and free energy

    NASA Astrophysics Data System (ADS)

    Banerjee, Avik; Kundu, Arnab; Kundu, Sandipan

    2016-02-01

    The dynamics of a probe brane in a given gravitational background is governed by the Dirac-Born-Infeld action. The corresponding open string metric arises naturally in studying the fluctuations on the probe. In Gauge-String duality, it is known that in the presence of a constant electric field on the worldvolume of the probe, the open string metric acquires an event horizon and therefore the fluctuation modes on the probe experience an effective temperature. In this article, we bring together various properties of such a system to a formal definition and a subsequent narration of the effective thermodynamics and the stress tensor of the corresponding flavour fields, also including a non-vanishing chemical potential. In doing so, we point out a potentially infinitely-degenerate scheme-dependence of regularizing the free energy, which nevertheless yields a universal contribution in certain cases. This universal piece appears as the coefficient of a log-divergence in free energy when a space-filling probe brane is embedded in AdS d+1-background, for d = 2, 4, and is related to conformal anomaly. For the special case of d = 2, the universal factor has a striking resemblance to the well-known heat current formula in (1 + 1)-dimensional conformal field theory in steady-state, which endows a plausible physical interpretation to it. Interestingly, we observe a vanishing conformal anomaly in d = 6.

  5. Quasi-steady state aerodynamics of the cheetah tail

    PubMed Central

    Boje, Edward; Fisher, Callen; Louis, Leeann; Lane, Emily

    2016-01-01

    ABSTRACT During high-speed pursuit of prey, the cheetah (Acinonyx jubatus) has been observed to swing its tail while manoeuvring (e.g. turning or braking) but the effect of these complex motions is not well understood. This study demonstrates the potential of the cheetah's long, furry tail to impart torques and forces on the body as a result of aerodynamic effects, in addition to the well-known inertial effects. The first-order aerodynamic forces on the tail are quantified through wind tunnel testing and it is observed that the fur nearly doubles the effective frontal area of the tail without much mass penalty. Simple dynamic models provide insight into manoeuvrability via simulation of pitch, roll and yaw tail motion primitives. The inertial and quasi-steady state aerodynamic effects of tail actuation are quantified and compared by calculating the angular impulse imparted onto the cheetah's body and its shown aerodynamic effects contribute to the tail's angular impulse, especially at the highest forward velocities. PMID:27412267

  6. Estimation of the Maximal Lactate Steady State in Endurance Runners.

    PubMed

    Llodio, I; Gorostiaga, E M; Garcia-Tabar, I; Granados, C; Sánchez-Medina, L

    2016-06-01

    This study aimed to predict the velocity corresponding to the maximal lactate steady state (MLSSV) from non-invasive variables obtained during a maximal multistage running field test (modified University of Montreal Track Test, UMTT), and to determine whether a single constant velocity test (CVT), performed several days after the UMTT, could estimate the MLSSV. Within 4-5 weeks, 20 male runners performed: 1) a modified UMTT, and 2) several 30 min CVTs to determine MLSSV to a precision of 0.25 km·h(-1). Maximal aerobic velocity (MAV) was the best predictor of MLSSV. A regression equation was obtained: MLSSV=1.425+(0.756·MAV); R(2)=0.63. Running velocity during the CVT (VCVT) and blood lactate at 6 (La6) and 30 (La30) min further improved the MLSSV prediction: MLSSV=VCVT+0.503 - (0.266·ΔLa30-6); R(2)=0.66. MLSSV can be estimated from MAV during a single maximal multistage running field test among a homogeneous group of trained runners. This estimation can be further improved by performing an additional CVT. In terms of accuracy, simplicity and cost-effectiveness, the reported regression equations can be used for the assessment and training prescription of endurance runners. PMID:27116348

  7. Nonequilibrium steady states of ideal bosonic and fermionic quantum gases

    NASA Astrophysics Data System (ADS)

    Vorberg, Daniel; Wustmann, Waltraut; Schomerus, Henning; Ketzmerick, Roland; Eckardt, André

    2015-12-01

    We investigate nonequilibrium steady states of driven-dissipative ideal quantum gases of both bosons and fermions. We focus on systems of sharp particle number that are driven out of equilibrium either by the coupling to several heat baths of different temperature or by time-periodic driving in combination with the coupling to a heat bath. Within the framework of (Floquet-)Born-Markov theory, several analytical and numerical methods are described in detail. This includes a mean-field theory in terms of occupation numbers, an augmented mean-field theory taking into account also nontrivial two-particle correlations, and quantum-jump-type Monte Carlo simulations. For the case of the ideal Fermi gas, these methods are applied to simple lattice models and the possibility of achieving exotic states via bath engineering is pointed out. The largest part of this work is devoted to bosonic quantum gases and the phenomenon of Bose selection, a nonequilibrium generalization of Bose condensation, where multiple single-particle states are selected to acquire a large occupation [Phys. Rev. Lett. 111, 240405 (2013), 10.1103/PhysRevLett.111.240405]. In this context, among others, we provide a theory for transitions where the set of selected states changes, describe an efficient algorithm for finding the set of selected states, investigate beyond-mean-field effects, and identify the dominant mechanisms for heat transport in the Bose-selected state.

  8. Steady-state and transient results on insulation materials

    SciTech Connect

    Graves, R.S.; Yarbrough, D.W.; McElroy, D.L.; Fine, H.A.

    1991-01-01

    The Unguarded Thin-Heater Apparatus (UTHA, ASTM C 1114) was used to determine the thermal conductivity (k), specific heat (C), and thermal diffusivity ({alpha}) of selected building materials from 24 to 50{degree}C. Steady-state and transient measurements yielded data on four types of material: gypsum wall board containing 0, 15, and 30 wt % wax; calcium silicate insulations with densities ({rho}) of 307, 444, and 605 kg/m{sup 3}; three wood products: southern yellow pine flooring (575 kg/m{sup 3}), Douglas fir plywood (501 kg/m{sup 3}), and white spruce flooring (452 kg/m{sup 3}); and two cellular plastic foams: extruded polystyrene (30 kg/m{sup 3}) blown with HCFC-142b and polyisocyanurate rigid board (30.2 kg/m{sup 3}) blown with CFC-11. The extruded polystyrene was measured several times after production (25 days, 45 days, 74 days, 131 days, and 227 days). The UTHA is an absolute technique that yields k with an uncertainty of less than {plus minus}2% as determined by modeling, by determinate error analyses, and by use of Standard Reference Materials SRM-1450b and SRM-1451. 37 refs., 5 figs., 10 tabs.

  9. NASA Lewis steady-state heat pipe code users manual

    NASA Technical Reports Server (NTRS)

    Tower, Leonard K.; Baker, Karl W.; Marks, Timothy S.

    1992-01-01

    The NASA Lewis heat pipe code was developed to predict the performance of heat pipes in the steady state. The code can be used as a design tool on a personal computer or with a suitable calling routine, as a subroutine for a mainframe radiator code. A variety of wick structures, including a user input option, can be used. Heat pipes with multiple evaporators, condensers, and adiabatic sections in series and with wick structures that differ among sections can be modeled. Several working fluids can be chosen, including potassium, sodium, and lithium, for which monomer-dimer equilibrium is considered. The code incorporates a vapor flow algorithm that treats compressibility and axially varying heat input. This code facilitates the determination of heat pipe operating temperatures and heat pipe limits that may be encountered at the specified heat input and environment temperature. Data are input to the computer through a user-interactive input subroutine. Output, such as liquid and vapor pressures and temperatures, is printed at equally spaced axial positions along the pipe as determined by the user.

  10. Steady-State Movement Related Potentials for Brain Computer Interfacing

    PubMed Central

    Nazarpour, Kianoush; Praamstra, Peter; Miall, R. Chris; Sanei, Saeid

    2012-01-01

    An approach for brain computer interfacing (BCI) by analysis of steady-state movement related potentials (ssMRP) produced during rhythmic finger movements is proposed in this paper. The neurological background of ssMRPs is briefly reviewed. Averaged ssMRPs represented the development of a lateralized rhythmic potential and the energy of the electroencephalogram (EEG) signals at the finger tapping frequency can be used for single trial ssMRP classification. The proposed ssMRP-based BCI approach is tested using the classic Fisher’s linear discriminant (FLD) classifier. Moreover, the influence of the current source density transform on the performance of BCI system is investigated. The averaged correct classification rates (CCR) as well as averaged information transfer rates (ITR) for different sliding time windows are reported. Reliable single trial classification rates of 88%-100% accuracy are achievable at relatively high ITRs. Furthermore, we have been able to achieve CCRs of up to 93% in classification of the sMRPs recorded during imagined rhythmic finger movements. The merit of this approach is in the application of rhythmic cues for BCI, the relatively simple recording setup, and straightforward computations which make the real-time implementations plausible. PMID:19403356

  11. Steady state quantum discord for circularly accelerated atoms

    NASA Astrophysics Data System (ADS)

    Hu, Jiawei; Yu, Hongwei

    2015-12-01

    We study, in the framework of open quantum systems, the dynamics of quantum entanglement and quantum discord of two mutually independent circularly accelerated two-level atoms in interaction with a bath of fluctuating massless scalar fields in the Minkowski vacuum. We assume that the two atoms rotate synchronically with their separation perpendicular to the rotating plane. The time evolution of the quantum entanglement and quantum discord of the two-atom system is investigated. For a maximally entangled initial state, the entanglement measured by concurrence diminishes to zero within a finite time, while the quantum discord can either decrease monotonically to an asymptotic value or diminish to zero at first and then followed by a revival depending on whether the initial state is antisymmetric or symmetric. When both of the two atoms are initially excited, the generation of quantum entanglement shows a delayed feature, while quantum discord is created immediately. Remarkably, the quantum discord for such a circularly accelerated two-atom system takes a nonvanishing value in the steady state, and this is distinct from what happens in both the linear acceleration case and the case of static atoms immersed in a thermal bath.

  12. Steady State Turbulent Transport in Magnetic Fusion Plasmas

    SciTech Connect

    Lee, W. W.; Ethier, S.; Kolesnikov, R.; Wang, W. X.; Tang, W. M.

    2007-12-20

    For more than a decade, the study of microturbulence, driven by ion temperature gradient (ITG) drift instabilities in tokamak devices, has been an active area of research in magnetic fusion science for both experimentalists and theorists alike. One of the important impetus for this avenue of research was the discovery of the radial streamers associated the ITG modes in the early nineties using a Particle-In-Cell (PIC) code. Since then, ITG simulations based on the codes with increasing realism have become possible with the dramatic increase in computing power. The notable examples were the demonstration of the importance of nonlinearly generated zonal flows in regulating ion thermal transport and the transition from Bohm to GyroBoham scaling with increased device size. In this paper, we will describe another interesting nonlinear physical process associated with the parallel acceleration of the ions, that is found to play an important role for the steady state turbulent transport. Its discovery is again through the use of the modern massively parallel supercomputers.

  13. The Path of Carbon in Photosynthesis XX. The Steady State

    DOE R&D Accomplishments Database

    Calvin, M.; Massini, Peter

    1952-09-01

    The separation of the phenomenon of photosynthesis in green plants into a photochemical reaction and into the light-dependent reduction of carbon dioxide is discussed, The reduction of carbon dioxide and the fate of the assimilated carbon were investigated with the help of the tracer technique (exposure of the planks to the radioactive C{sup 14}O{sub 2}) and of paper chromatography. A reaction cycle is proposed in which phosphoglyceric acid is the first isolable assimilations product. Analyses of the algal extracts which had assimilated radioactive carbon dioxide in a stationary condition ('steady-state' photosynthesis) for a long time provided further information concerning the proposed cycle and permitted the approximate estimation, for a number of compounds of what fraction of each compound was taking part in the cycle. The earlier supposition that light influences the respiration cycle was confirmed. The possibility of the assistance of {alpha}-lipoic acid, or of a related substance, in this influence and in the photosynthesis cycle, is discussed.

  14. Steady State Response Analysis of a Tubular Piezoelectric Print Head.

    PubMed

    Chang, Jiaqing; Liu, Yaxin; Huang, Bo

    2016-01-01

    In recent years, inkjet technology has played an important role in industrial materials printing and various sensors fabrication, but the mechanisms of the inkjet print head should be researched more elaborately. The steady state deformation analysis of a tubular piezoelectric print head, which can be classified as a plane strain problem because the radii of the tubes are considerably smaller than the lengths, is discussed in this paper. The geometric structure and the boundary conditions are all axisymmetric, so a one-dimensional mathematical model is constructed. By solving the model, the deformation field and stress field, as well as the electric potential distribution of the piezoelectric tube and glass tube, are obtained. The results show that the deformations are on the nanometer scale, the hoop stress is larger than the radial stress on the whole, and the potential is not linearly distributed along the radial direction. An experiment is designed to validate these computations. A discussion of the effect of the tubes' thicknesses on the system deformation status is provided. PMID:26771612

  15. Steady-state growth of the marine diatom Thalassiosira pseudonana

    SciTech Connect

    Olson, R.J.; SooHoo, J.B.; Kiefer, D.A.

    1980-09-01

    Seasonal studies of the vertical distribution of nitrate, nitrite, and phytoplankton in the oceans and studies using /sup 15/N as a tracer of nitrate metabolism indicate that the reduction of nitrate by phytoplankton is a source of nitrite in the upper waters of the ocean. To better understand this process, the relationship between nitrate uptake and nitrite production has been examined with continuous cultures of the small marine diatom Thalassiosira pseudonana. In a turbidostat culture, the rates of nitrite production by T. Pseudonana increase with light intensity. This process is only loosely coupled to rates of nitrate assimilation since the ratio of net nitrite production to total nitrate assimilation increases with increased rates of growth. In continuous cultures where steady-state concentrations of nitrate and nitrite were varied, T. pseudonana produced nitrite at rates which increased with increasing concentrations of nitrate. Again, the rates of nitrite production were uncoupled from rates of nitrate assimilation. The study was used to derive a mathematical description of nitrate and nitrite metabolism by T. pseudonana. The validity of this model was supported by the results of a study in which /sup 15/N-labeled nitrite was introduced into the continuous culture, and the model was used to examine patterns in distribution of nitrite in the Antarctic Ocean and the Sargasso Sea.

  16. Magnetocentrifugal Winds in 3D: Nonaxisymmetric Steady State

    SciTech Connect

    Anderson, Jeffrey M.; Li, Zhi-Yun; Krasnopolsky, Ruben; Blandford, Roger D.; /SLAC

    2006-11-28

    Outflows can be loaded and accelerated to high speeds along rapidly rotating, open magnetic field lines by centrifugal forces. Whether such magnetocentrifugally driven winds are stable is a longstanding theoretical problem. As a step towards addressing this problem, we perform the first large-scale 3D MHD simulations that extend to a distance {approx} 10{sup 2} times beyond the launching region, starting from steady 2D (axisymmetric) solutions. In an attempt to drive the wind unstable, we increase the mass loading on one half of the launching surface by a factor of {radical}10, and reduce it by the same factor on the other half. The evolution of the perturbed wind is followed numerically. We find no evidence for any rapidly growing instability that could disrupt the wind during the launching and initial phase of propagation, even when the magnetic field of the magnetocentrifugal wind is toroidally dominated all the way to the launching surface. The strongly perturbed wind settles into a new steady state, with a highly asymmetric mass distribution. The distribution of magnetic field strength is, in contrast, much more symmetric. We discuss possible reasons for the apparent stability, including stabilization by an axial poloidal magnetic field, which is required to bend field lines away from the vertical direction and produce a magnetocentrifugal wind in the first place.

  17. Steady state model of electrochemical gas sensors with multiple reactions

    SciTech Connect

    Brailsford, A.D.; Yussouff, M.; Logothetis, E.M.

    1996-12-31

    A general first-principles model of the steady state response of metal oxide gas sensors was developed by the authors and applied to the case of both electrochemical and resistive type oxygen sensors. It can describe many features of the experimentally observed response of commercial electrochemical zirconia sensors exposed to non-equilibrium gas mixtures consisting of O{sub 2} and one or more reducing species (CO, H{sub 2} , etc). However, the calculated sensor emf as a function of R`= 2p{sub O2}/P{sub CO} (or 2p{sub O2}/P{sub H2}) always showed a sharp transition from high to low values at some R` value and had a small value for R` >> 1. These results do not agree with the broad transitions and relatively high emf values for large R`, as observed experimentally at low temperatures. This paper discusses an extension of the model which is able to describe all aspects of the observed response.

  18. Modeling biofiltration of VOC mixtures under steady-state conditions

    SciTech Connect

    Baltzis, B.C.; Wojdyla, S.M.; Zarook, S.M.

    1997-06-01

    Treatment of air streams contaminated with binary volatile organic compound (VOC) mixtures in classical biofilters under steady-state conditions of operation was described with a general mathematical model. The model accounts for potential kinetic interactions among the pollutants, effects of oxygen availability on biodegradation, and biomass diversification in the filter bed. While the effects of oxygen were always taken into account, two distinct cases were considered for the experimental model validation. The first involves kinetic interactions, but no biomass differentiation, used for describing data from biofiltration of benzene/toluene mixtures. The second case assumes that each pollutant is treated by a different type of biomass. Each biomass type is assumed to form separate patches of biofilm on the solid packing material, thus kinetic interference does not occur. This model was used for describing biofiltration of ethanol/butanol mixtures. Experiments were performed with classical biofilters packed with mixtures of peat moss and perlite (2:3, volume:volume). The model equations were solved through the use of computer codes based on the fourth-order Runge-Kutta technique for the gas-phase mass balances and the method of orthogonal collocation for the concentration profiles in the biofilms. Good agreement between model predictions and experimental data was found in almost all cases. Oxygen was found to be extremely important in the case of polar VOCs (ethanol/butanol).

  19. Steady state solutions to dynamically loaded periodic structures

    NASA Technical Reports Server (NTRS)

    Kalinowski, A. J.

    1980-01-01

    The general problem of solving for the steady state (time domain) dynamic response (i.e., NASTRAN rigid format-8) of a general elastic periodic structure subject to a phase difference loading of the type encountered in traveling wave propagation problems was studied. Two types of structural configurations were considered; in the first type, the structure has a repeating pattern over a span that is long enough to be considered, for all practical purposes, as infinite; in the second type, the structure has structural rotational symmetry in the circumferential direction. The theory and a corresponding set of DMAP instructions which permits the NASTRAN user to automatically alter the rigid format-8 sequence to solve the intended class of problems are presented. Final results are recovered as with any ordinary rigid format-8 solution, except that the results are only printed for the typical periodic segment of the structure. A simple demonstration problem having a known exact solution is used to illustrate the implementation of the procedure.

  20. Mimicking Nonequilibrium Steady States with Time-Periodic Driving

    NASA Astrophysics Data System (ADS)

    Raz, Oren; Subasi, Yigit; Jarzynski, Christopher

    Under static conditions, a system satisfying detailed balance generically relaxes to an equilibrium state in which there are no currents: to generate persistent currents, either detailed balance must be broken or the system must be driven in a time-dependent manner. A stationary system that violates detailed balance evolves to a nonequilibrium steady state (NESS) characterized by fixed currents. Conversely, a system that satisfies instantaneous detailed balance but is driven by the time-periodic variation of external parameters - also known as a stochastic pump (SP) - reaches a periodic state with non-vanishing currents. In both cases, these currents are maintained at the cost of entropy production. Are these two paradigmatic scenarios effectively equivalent? For discrete-state systems we establish a mapping between NESS and SP. Given a NESS characterized by a particular set of stationary probabilities, currents and entropy production rates, we show how to construct a SP with exactly the same (time-averaged) values. The mapping works in the opposite direction as well. These results establish a proof of principle: they show that SP are able to mimic the behavior of NESS, and vice-versa, within the theoretical framework of discrete-state stochastic thermodynamics.

  1. Nonequilibrium steady states of ideal bosonic and fermionic quantum gases.

    PubMed

    Vorberg, Daniel; Wustmann, Waltraut; Schomerus, Henning; Ketzmerick, Roland; Eckardt, André

    2015-12-01

    We investigate nonequilibrium steady states of driven-dissipative ideal quantum gases of both bosons and fermions. We focus on systems of sharp particle number that are driven out of equilibrium either by the coupling to several heat baths of different temperature or by time-periodic driving in combination with the coupling to a heat bath. Within the framework of (Floquet-)Born-Markov theory, several analytical and numerical methods are described in detail. This includes a mean-field theory in terms of occupation numbers, an augmented mean-field theory taking into account also nontrivial two-particle correlations, and quantum-jump-type Monte Carlo simulations. For the case of the ideal Fermi gas, these methods are applied to simple lattice models and the possibility of achieving exotic states via bath engineering is pointed out. The largest part of this work is devoted to bosonic quantum gases and the phenomenon of Bose selection, a nonequilibrium generalization of Bose condensation, where multiple single-particle states are selected to acquire a large occupation [Phys. Rev. Lett. 111, 240405 (2013)]. In this context, among others, we provide a theory for transitions where the set of selected states changes, describe an efficient algorithm for finding the set of selected states, investigate beyond-mean-field effects, and identify the dominant mechanisms for heat transport in the Bose-selected state. PMID:26764644

  2. Dynamic steady state of periodically driven quantum systems

    NASA Astrophysics Data System (ADS)

    Yudin, V. I.; Taichenachev, A. V.; Basalaev, M. Yu.

    2016-01-01

    Using the density matrix formalism, we prove the existence of the periodic steady state for an arbitrary periodically driven system described by linear dynamic equations. This state has the same period as the modulated external influence, and it is realized as an asymptotic solution (t →+∞ ) due to relaxation processes. The presented derivation simultaneously contains a simple and effective computational algorithm (without using either the Floquet or Fourier formalisms), which automatically guarantees a full account of all frequency components. As a particular example, for three-level Λ system we calculate the line shape and field-induced shift of the dark resonance formed by the field with a periodically modulated phase. Also we have analytically solved a basic theoretical problem of the direct frequency comb spectroscopy, when the two-level system is driven by the periodic sequence of rectangular pulses. In this case, the radical dependence of the spectroscopy line shape on pulse area is found. Moreover, the existence of quasiforbidden spectroscopic zones, in which the Ramsey fringes are significantly reduced, is predicted. Our results have a wide area of applications in laser physics, spectroscopy, atomic clocks, and magnetometry. Also they can be useful for any area of quantum physics where periodically driven systems are considered.

  3. NASA Lewis steady-state heat pipe code users manual

    SciTech Connect

    Tower, L.K.; Baker, K.W.; Marks, T.S.

    1992-06-01

    The NASA Lewis heat pipe code has been developed to predict the performance of heat pipes in the steady state. The code can be used as a design tool on a personal computer or, with a suitable calling routine, as a subroutine for a mainframe radiator code. A variety of wick structures, including a user input option, can be used. Heat pipes with multiple evaporators, condensers, and adiabatic sections in series and with wick structures that differ among sections can be modeled. Several working fluids can be chosen, including potassium, sodium, and lithium, for which the monomer-dimer equilibrium is considered. The code incorporates a vapor flow algorithm that treats compressibility and axially varying heat input. This code facilitates the determination of heat pipe operating temperatures and heat pipe limits that may be encountered at the specified heat input and environment temperature. Data are input to the computer through a user-interactive input subroutine. Output, such as liquid and vapor pressures and temperatures, is printed at equally spaced axial positions along the pipe as determined by the user.

  4. Quasi-steady state aerodynamics of the cheetah tail.

    PubMed

    Patel, Amir; Boje, Edward; Fisher, Callen; Louis, Leeann; Lane, Emily

    2016-01-01

    During high-speed pursuit of prey, the cheetah (Acinonyx jubatus) has been observed to swing its tail while manoeuvring (e.g. turning or braking) but the effect of these complex motions is not well understood. This study demonstrates the potential of the cheetah's long, furry tail to impart torques and forces on the body as a result of aerodynamic effects, in addition to the well-known inertial effects. The first-order aerodynamic forces on the tail are quantified through wind tunnel testing and it is observed that the fur nearly doubles the effective frontal area of the tail without much mass penalty. Simple dynamic models provide insight into manoeuvrability via simulation of pitch, roll and yaw tail motion primitives. The inertial and quasi-steady state aerodynamic effects of tail actuation are quantified and compared by calculating the angular impulse imparted onto the cheetah's body and its shown aerodynamic effects contribute to the tail's angular impulse, especially at the highest forward velocities. PMID:27412267

  5. Steady State Response Analysis of a Tubular Piezoelectric Print Head

    PubMed Central

    Chang, Jiaqing; Liu, Yaxin; Huang, Bo

    2016-01-01

    In recent years, inkjet technology has played an important role in industrial materials printing and various sensors fabrication, but the mechanisms of the inkjet print head should be researched more elaborately. The steady state deformation analysis of a tubular piezoelectric print head, which can be classified as a plane strain problem because the radii of the tubes are considerably smaller than the lengths, is discussed in this paper. The geometric structure and the boundary conditions are all axisymmetric, so a one-dimensional mathematical model is constructed. By solving the model, the deformation field and stress field, as well as the electric potential distribution of the piezoelectric tube and glass tube, are obtained. The results show that the deformations are on the nanometer scale, the hoop stress is larger than the radial stress on the whole, and the potential is not linearly distributed along the radial direction. An experiment is designed to validate these computations. A discussion of the effect of the tubes’ thicknesses on the system deformation status is provided. PMID:26771612

  6. Hyperbolic method for magnetic reconnection process in steady state magnetohydrodynamics

    NASA Astrophysics Data System (ADS)

    Baty, Hubert; Nishikawa, Hiroaki

    2016-06-01

    A recent numerical approach for solving the advection-diffusion and Navier-Stokes equations is extended for the first time to a magnetohydrodynamic (MHD) model, aiming in particular consistent improvements over classical methods for investigating the magnetic reconnection process. In this study, we mainly focus on a two-dimensional incompressible set of resistive MHD equations written in flux-vorticity scalar variables. The originality of the method is based on hyperbolic reformulation of the dissipative terms, leading to the construction of an equivalent hyperbolic first-order (spatial derivatives) system. This enables the use of approximate Riemann solvers for handling dissipative and advective flux in the same way. A simple second-order finite-volume discretization on rectangular grids using an upwind flux is employed. The advantages of this method are illustrated by a comparison to two particular analytical steady state solutions of the inviscid magnetic reconnection mechanism, namely the magnetic annihilation and the reconnective diffusion problems. In particular, the numerical solution is obtained with the same order of accuracy for the solution and gradient for a wide range of magnetic Reynolds numbers, without any deterioration characteristic of more conventional schemes. The amelioration of the hyperbolic method and its extension to time-dependent MHD problems related to solar flares mechanisms is also discussed.

  7. Methionine sustituted polyamides are RNAse mimics that inhibit translation.

    PubMed

    Kumar, Rohtash; Garneau, Philippe; Nguyen, Nhi; William Lown, J; Pelletier, Jerry

    2004-04-01

    RNAse mimics are small molecules that can cleave RNA in a fashion similar to ribonucleases. These compounds would be very useful as gene specific reagents if their activities could be regulated and targeted. We demonstrate here that polyamides with methionine substituents show enhanced RNA cleavage activity relative to other polyamides. Conjugation of these compounds to aminoglycosides produced RNAse mimics that are capable of inhibiting eukaryotic protein synthesis. As a new class of compounds capable of interacting with nucleic acids, these novel aminoglycoside-polyamides constitute promising scaffolds for the construction of nuclease mimics with biological activity. PMID:15203891

  8. Inhibition of host cell translation elongation by Legionella pneumophila blocks the host cell unfolded protein response

    PubMed Central

    Hempstead, Andrew D.; Isberg, Ralph R.

    2015-01-01

    Cells of the innate immune system recognize bacterial pathogens by detecting common microbial patterns as well as pathogen-specific activities. One system that responds to these stimuli is the IRE1 branch of the unfolded protein response (UPR), a sensor of endoplasmic reticulum (ER) stress. Activation of IRE1, in the context of Toll-like receptor (TLR) signaling, induces strong proinflammatory cytokine induction. We show here that Legionella pneumophila, an intravacuolar pathogen that replicates in an ER-associated compartment, blocks activation of the IRE1 pathway despite presenting pathogen products that stimulate this response. L. pneumophila TLR ligands induced the splicing of mRNA encoding XBP1s, the main target of IRE1 activity. L. pneumophila was able to inhibit both chemical and bacterial induction of XBP1 splicing via bacterial translocated proteins that interfere with host protein translation. A strain lacking five translocated translation elongation inhibitors was unable to block XBP1 splicing, but this could be rescued by expression of a single such inhibitor, consistent with limitation of the response by translation elongation inhibitors. Chemical inhibition of translation elongation blocked pattern recognition receptor-mediated XBP1 splicing, mimicking the effects of the bacterial translation inhibitors. In contrast, host cell-promoted inhibition of translation initiation in response to the pathogen was ineffective in blocking XBP1 splicing, demonstrating the need for the elongation inhibitors for protection from the UPR. The inhibition of host translation elongation may be a common strategy used by pathogens to limit the innate immune response by interfering with signaling via the UPR. PMID:26598709

  9. Whole Plant and Leaf Steady State Gas Exchange during Ethylene Exposure in Xanthium strumarium L. 1

    PubMed Central

    Woodrow, Lorna; Jiao, Jirong; Tsujita, M. James; Grodzinski, Bernard

    1989-01-01

    The effects of ethylene evolved from ethephon on leaf and whole plant photosynthesis in Xanthium strumarium L. were examined. Ethylene-induced epinasty reduced light interception by the leaves of ethephon treated plants by up to 60%. Gas exchange values of individual, attached leaves under identical assay conditions were not inhibited even after 36 hours of ethylene exposure, although treated leaves required a longer induction period to achieve steady state photosynthesis. The speed of translocation of recently fixed 11C-assimilate movement was not seriously impaired following ethephon treatment; however, a greater proportion of the assimilate was partitioned downward toward the roots. Within 24 hours of ethephon treatment, the whole plant net carbon exchange rate expressed on a per plant basis or a leaf area basis had dropped by 35%. The apparent inhibition of net carbon exchange rate was reversed by physically repositioning the leaves with respect to the light source. Ethylene exposure also inhibited expansion of young leaves which was partially reversed when the leaves were repositioned. The data indicated that ethylene indirectly affected net C gain and plant growth through modification of light interception and altered sink demand without directly inhibiting leaf photosynthesis. Images Figure 1 PMID:16666773

  10. There are no steady state processes in compaction

    NASA Astrophysics Data System (ADS)

    Dysthe, D. K.

    2003-04-01

    Compaction of sediments is normally thought to start with grain sliding and cataclastic grain crushing. Then the ductile dissolution-precipitation creep processes take over. Modeling of this process normally neglects all collective rearrangement processes and regard simple packings of grains that slowly deform by steady state pressure solution creep. From simple geometrical reasoning we know, however that imperfect packings of plastic grains must undergo rearrangement during compaction. Such rearrangement will drastically alter the microscopic, or "primitive processes" of compaction. Recent research has questioned the fundamental mechanisms ("primitive processes") of dissolution-precipitation creep. Do grain contacts heal or dissolve? Why is there asymmetric dissolution? Does pressure solution creep in single contacts ever reach steady state? Can transient free face dissolution feed back on pressure solution creep in the contacts? The emerging radical change in our understanding of dissolution-precipitation creep as a dynamic, transient process is driven by new experiments and reevaluation of the fundamental theory. The same change in viewpoint is necessary on all time and length scales. I will present experiments [1-8] and simulations [9-11] of complex compaction behaviour [1], transient primitive processes of pressure solution creep in the contacts [2-4], free face dissolution [5] and crack healing [6]. I will also show that macroscopic observation of compaction shows smooth, universal behaviour [7]. Microscopic observation of compaction shows transient collective behaviour at all scales. Evidence points in the direction that compaction is dominated by transient processes with interacting instabilities. The interaction causes intermittency or switching between processes. A new, more complex theory of compaction is necessary to explain how the cooperative microscopic phenomena contribute to the simple, universal, macroscopic behaviour. 1. Uri, L., et. al., in

  11. A steady-state model of the lunar ejecta cloud

    NASA Astrophysics Data System (ADS)

    Christou, Apostolos

    2014-05-01

    Every airless body in the solar system is surrounded by a cloud of ejecta produced by the impact of interplanetary meteoroids on its surface [1]. Such ``dust exospheres'' have been observed around the Galilean satellites of Jupiter [2,3]. The prospect of long-term robotic and human operations on the Moon by the US and other countries has rekindled interest on the subject [4]. This interest has culminated with the - currently ongoing - investigation of the Moon's dust exosphere by the LADEE spacecraft [5]. Here a model is presented of a ballistic, collisionless, steady state population of ejecta launched vertically at randomly distributed times and velocities and moving under constant gravity. Assuming a uniform distribution of launch times I derive closed form solutions for the probability density functions (pdfs) of the height distribution of particles and the distribution of their speeds in a rest frame both at the surface and at altitude. The treatment is then extended to particle motion with respect to a moving platform such as an orbiting spacecraft. These expressions are compared with numerical simulations under lunar surface gravity where the underlying ejection speed distribution is (a) uniform (b) a power law. I discuss the predictions of the model, its limitations, and how it can be validated against near-surface and orbital measurements.[1] Gault, D. Shoemaker, E.M., Moore, H.J., 1963, NASA TN-D 1767. [2] Kruger, H., Krivov, A.V., Hamilton, D. P., Grun, E., 1999, Nature, 399, 558. [3] Kruger, H., Krivov, A.V., Sremcevic, M., Grun, E., 2003, Icarus, 164, 170. [4] Grun, E., Horanyi, M., Sternovsky, Z., 2011, Planetary and Space Science, 59, 1672. [5] Elphic, R.C., Hine, B., Delory, G.T., Salute, J.S., Noble, S., Colaprete, A., Horanyi, M., Mahaffy, P., and the LADEE Science Team, 2014, LPSC XLV, LPI Contr. 1777, 2677.

  12. Steady state growth of E. Coli in low ammonium environment

    NASA Astrophysics Data System (ADS)

    Kim, Minsu; Deris, Barret; Zhang, Zhongge; Hwa, Terry

    2011-03-01

    Ammonium is the preferred nitrogen source for many microorganisms. In medium with low ammonium concentrations, enteric bacteria turn on the nitrogen responsive (ntr) genes to assimilate ammonium. Two proteins in E. coli, Glutamine synthetase (GS) and the Ammonium/methylammonium transporter AmtB play crucial roles in this regard. GS is the major ammonium assimilation enzyme below 1mM of NH4 + . AmtB is an inner membrane protein that transports NH4 + across the cell membrane against a concentration gradient. In order to study ammonium uptake at low NH4 + concentration at neutral pH, we developed a microfluidic flow chamber that maintains a homogenous nutrient environment during the course of exponential cell growth, even at very low concentration of nutrients. Cell growth can be accurately monitored using time-lapse microscopy. We followed steady state growth down to micro-molar range of NH4 + for the wild type and Δ amtB strains. The wild type strain is able to maintain the growth rate from 10mM down to a few uM of NH4 + , while the mutant exhibited reduced growth below ~ 20 ~uM of NH4 + . Simultaneous characterization of the expression levels of GS and AmtB using fluorescence reporters reveals that AmtB is turned on already at 1mM, but contributes to function only below ~ 30 ~uM in the wild-type. Down to ~ 20 ~uM of NH4 + , E.~coli can compensate the loss of AmtB by GS alone.

  13. Kinematical Analysis along Maximal Lactate Steady State Swimming Intensity

    PubMed Central

    Figueiredo, Pedro; Nazario, Rafael; Sousa, Marisa; Pelarigo, Jailton Gregório; Vilas-Boas, João Paulo; Fernandes, Ricardo

    2014-01-01

    The purpose of this study was to conduct a kinematical analysis during swimming at the intensity corresponding to maximal lactate steady state (MLSS). Thirteen long distance swimmers performed, in different days, an intermittent incremental protocol of n x 200 m until exhaustion and two to four 30-min submaximal constant speed bouts to determine the MLSS. The video analysis, using APAS System (Ariel Dynamics Inc., USA), allowed determining the following relevant swimming determinants (in five moments of the 30-min test: 0, 25, 50, 75, and 100%): stroke rate, stroke length, trunk incline, intracyclic velocity variation, propelling efficiency, index of coordination and the time allotted to propulsion per distance unit. An ANOVA for repeated measures was used to compare the parameters mean values along each moment of analysis. Stoke rate tended to increase and stroke length to decrease along the test; a tendency to decrease was also found for intracyclic velocity variation and propelling efficiency whereas the index of coordination and the propulsive impulse remained stable during the MLSS test. It can be concluded that the MLSS is not only an intensity to maintain without a significant increase of blood lactate concentration, but a concomitant stability for some biomechanical parameters exists (after an initial adaptation). However, efficiency indicators seem to be more sensitive to changes occurring during swimming at this threshold intensity. Key Points In MLSS swimming intensity, stability of the stroke length and stroke frequency occurs after an initial adaptation. Efficiency indicators seem to be more sensitive to possible changes occurring through time at MLSS intensity. MLSS is a useful and practical swimming intensity to be maintained for a long period of time, but some constraints in technique can occur. PMID:25177189

  14. Impact of aquifer desaturation on steady-state river seepage

    NASA Astrophysics Data System (ADS)

    Morel-Seytoux, Hubert J.; Miracapillo, Cinzia; Mehl, Steffen

    2016-02-01

    Flow exchange between surface and ground water is of great importance be it for beneficial allocation and use of the water resources or for the proper exercise of water rights. That exchange can take place under a saturated or unsaturated flow regime. Which regimes occur depend on conditions in the vicinity of the interactive area. Withdrawals partially sustained by seepage may not bring about desaturation but greater amounts eventually will. The problem considered in this paper deals only with the steady-state case. It is meant as a first step toward a simple, yet accurate and physically based treatment of the transient situation. The primary purpose of the article is to provide simple criteria for determination of the initiation of desaturation in an aquifer originally in saturated hydraulic connection with a river or a recharge area. The extent of the unsaturated zone in the aquifer will increase with increasing withdrawals while at the same time the seepage rate from the river increases. However the seepage increase will stop once infiltration takes place strictly by gravity in the aquifer and is no longer opposed by the capillary rise from the water table below the riverbed. Following desaturation simple criteria are derived and simple analytical formulae provided to estimate the river seepage based on the position of the water table mound below the clogging layer and at some distance away from the river bank. They fully account for the unsaturated flow phenomena, including the existence of a drainage entry pressure. Two secondary objectives were to verify that (1) the assumption of uniform vertical flow through a clogging layer and that (2) the approximation of the water table mound below the seepage area as a flat surface were both reasonably legitimate. This approach will be especially advantageous for the implementation of the methodology in large-scale applications of integrated hydrologic models used for management.

  15. Neutrophil-derived alpha defensins control inflammation by inhibiting macrophage mRNA translation.

    PubMed

    Brook, Matthew; Tomlinson, Gareth H; Miles, Katherine; Smith, Richard W P; Rossi, Adriano G; Hiemstra, Pieter S; van 't Wout, Emily F A; Dean, Jonathan L E; Gray, Nicola K; Lu, Wuyuan; Gray, Mohini

    2016-04-19

    Neutrophils are the first and most numerous cells to arrive at the site of an inflammatory insult and are among the first to die. We previously reported that alpha defensins, released from apoptotic human neutrophils, augmented the antimicrobial capacity of macrophages while also inhibiting the biosynthesis of proinflammatory cytokines. In vivo, alpha defensin administration protected mice from inflammation, induced by thioglychollate-induced peritonitis or following infection withSalmonella entericaserovar Typhimurium. We have now dissected the antiinflammatory mechanism of action of the most abundant neutrophil alpha defensin, Human Neutrophil Peptide 1 (HNP1). Herein we show that HNP1 enters macrophages and inhibits protein translation without inducing the unfolded-protein response or affecting mRNA stability. In a cell-free in vitro translation system, HNP1 powerfully inhibited both cap-dependent and cap-independent mRNA translation while maintaining mRNA polysomal association. This is, to our knowledge, the first demonstration of a peptide released from one cell type (neutrophils) directly regulating mRNA translation in another (macrophages). By preventing protein translation, HNP1 functions as a "molecular brake" on macrophage-driven inflammation, ensuring both pathogen clearance and the resolution of inflammation with minimal bystander tissue damage. PMID:27044108

  16. Peripheral neuropathy via mutant tRNA synthetases: Inhibition of protein translation provides a possible explanation.

    PubMed

    Storkebaum, Erik

    2016-09-01

    Recent evidence indicates that inhibition of protein translation may be a common pathogenic mechanism for peripheral neuropathy associated with mutant tRNA synthetases (aaRSs). aaRSs are enzymes that ligate amino acids to their cognate tRNA, thus catalyzing the first step of translation. Dominant mutations in five distinct aaRSs cause Charcot-Marie-Tooth (CMT) peripheral neuropathy, characterized by length-dependent degeneration of peripheral motor and sensory axons. Surprisingly, loss of aminoacylation activity is not required for mutant aaRSs to cause CMT. Rather, at least for some mutations, a toxic-gain-of-function mechanism underlies CMT-aaRS. Interestingly, several mutations in two distinct aaRSs were recently shown to inhibit global protein translation in Drosophila models of CMT-aaRS, by a mechanism independent of aminoacylation, suggesting inhibition of translation as a common pathogenic mechanism. Future research aimed at elucidating the molecular mechanisms underlying the translation defect induced by CMT-mutant aaRSs should provide novel insight into the molecular pathogenesis of these incurable diseases. PMID:27352040

  17. Translation Inhibition of Capped and Uncapped Viral RNAs Mediated by Ribosome-Inactivating Proteins.

    PubMed

    Vivanco, Jorge M; Tumer, Nilgun E

    2003-05-01

    ABSTRACT Ribosome-inactivating proteins (RIPs) are N-glycosidases that remove specific purine residues from the sarcin/ricin (S/R) loop of the large rRNA and arrest protein synthesis at the translocation step. In addition to their enzymatic activity, RIPs have been reputed to be potent antiviral agents against many plant, animal, and human viruses. We recently showed that pokeweed antiviral protein (PAP), an RIP from pokeweed, inhibits translation in cell extracts by binding to the cap structure of eukaryotic mRNA and viral RNAs and depurinating these RNAs at multiple sites downstream of the cap structure. In this study, we examined the activity of three different RIPs against capped and uncapped viral RNAs. PAP, Mirabilis expansa RIP (ME1), and the Saponaria officinalis RIP (saporin) depurinated the capped Tobacco mosaic virus and Brome mosaic virus RNAs, but did not depurinate the uncapped luciferase RNA, indicating that other type I RIPs besides PAP can distinguish between capped and uncapped RNAs. We did not detect depurination of Alfalfa mosaic virus (AMV) RNAs at multiple sites by PAP or ME1. Because AMV RNAs are capped, these results indicate that recognition of the cap structure alone is not sufficient for depurination of the RNA at multiple sites throughout its sequence. Furthermore, PAP did not cause detectable depurination of uncapped RNAs from Tomato bushy stunt virus (TBSV), Satellite panicum mosaic virus (SPMV), and uncapped RNA containing poliovirus internal ribosome entry site (IRES). However, in vitro translation experiments showed that PAP inhibited translation of AMV, TBSV, SPMV RNAs, and poliovirus IRES dependent translation. These results demonstrate that PAP does not depurinate every capped RNA and that PAP can inhibit translation of uncapped viral RNAs in vitro without causing detectable depurination at multiple sites. Thus, the cap structure is not the only determinant for inhibition of translation by PAP. PMID:18942981

  18. In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli

    PubMed Central

    Yu, Xingye; Liu, Tiangang; Zhu, Fayin; Khosla, Chaitan

    2011-01-01

    Microbial fatty acid derivatives are emerging as promising alternatives to fossil fuel derived transportation fuels. Among bacterial fatty acid synthases (FAS), the Escherichia coli FAS is perhaps the most well studied, but little is known about its steady-state kinetic behavior. Here we describe the reconstitution of E. coli FAS using purified protein components and report detailed kinetic analysis of this reconstituted system. When all ketosynthases are present at 1 μM, the maximum rate of free fatty acid synthesis of the FAS exceeded 100 μM/ min. The steady-state turnover frequency was not significantly inhibited at high concentrations of any substrate or cofactor. FAS activity was saturated with respect to most individual protein components when their concentrations exceeded 1 μM. The exceptions were FabI and FabZ, which increased FAS activity up to concentrations of 10 μM; FabH and FabF, which decreased FAS activity at concentrations higher than 1 μM; and holo-ACP and TesA, which gave maximum FAS activity at 30 μM concentrations. Analysis of the S36T mutant of the ACP revealed that the unusual dependence of FAS activity on holo-ACP concentration was due, at least in part, to the acyl-phosphopantetheine moiety. MALDI-TOF mass spectrometry analysis of the reaction mixture further revealed medium and long chain fatty acyl-ACP intermediates as predominant ACP species. We speculate that one or more of such intermediates are key allosteric regulators of FAS turnover. Our findings provide a new basis for assessing the scope and limitations of using E. coli as a biocatalyst for the production of diesel-like fuels. PMID:22042840

  19. Inhibiting K63 Polyubiquitination Abolishes No-Go Type Stalled Translation Surveillance in Saccharomyces cerevisiae

    PubMed Central

    Saito, Kazuki; Horikawa, Wataru; Ito, Koichi

    2015-01-01

    Incidental ribosome stalling during translation elongation is an aberrant phenomenon during protein synthesis and is subjected to quality control by surveillance systems, in which mRNA and a nascent protein are rapidly degraded. Their detailed molecular mechanisms as well as responsible factors for these processes are beginning to be understood. However, the initial processes for detecting stalled translation that result in degradation remain to be determined. Among the factors identified to date, two E3 ubiquitin ligases have been reported to function in distinct manners. Because ubiquitination is one of the most versatile of cellular signals, these distinct functions of E3 ligases suggested diverse ubiquitination pathways during surveillance for stalled translation. In this study, we report experimental evidences for a unique role of non-proteasomal K63 polyubiquitination during quality control for stalled translation. Inhibiting K63 polyubiquitination by expressing a K63R ubiquitin mutation in Saccharomyces cerevisiae cells markedly abolished the quality control responses for stalled translation. More detailed analyses indicated that the effects of K63R mutants were independent of the proteasome and that K63 polyubiquitination is dependent on Hel2, one of the E3 ligases. Moreover, a K63R ubiquitin mutant barely inhibited the quality control pathway for nonstop translation, indicating distinct mechanisms for these highly related quality control pathways. Our results suggest that non-proteasomal K63 polyubiquitination is included in the initial surveillance process of stalled translation and presumably triggers protein degradation steps upon translational stall. These findings provide crucial information regarding the detailed molecular mechanisms for the initial steps involved in quality control systems and their classification. PMID:25909477

  20. Progress towards high-performance, steady-state spherical torus

    NASA Astrophysics Data System (ADS)

    Ono, M.; Bell, M. G.; Bell, R. E.; Bigelow, T.; Bitter, M.; Blanchard, W.; Boedo, J.; Bourdelle, C.; Bush, C.; Choe, W.; Chrzanowski, J.; Darrow, D. S.; Diem, S. J.; Doerner, R.; Efthimion, P. C.; Ferron, J. R.; Fonck, R. J.; Fredrickson, E. D.; Garstka, G. D.; Gates, D. A.; Gray, T.; Grisham, L. R.; Heidbrink, W.; Hill, K. W.; Hoffman, D.; Jarboe, T. R.; Johnson, D. W.; Kaita, R.; Kaye, S. M.; Kessel, C.; Kim, J. H.; Kissick, M. W.; Kubota, S.; Kugel, H. W.; LeBlanc, B. P.; Lee, K.; Lee, S. G.; Lewicki, B. T.; Luckhardt, S.; Maingi, R.; Majeski, R.; Manickam, J.; Maqueda, R.; Mau, T. K.; Mazzucato, E.; Medley, S. S.; Menard, J.; Mueller, D.; Nelson, B. A.; Neumeyer, C.; Nishino, N.; Ostrander, C. N.; Pacella, D.; Paoletti, F.; Park, H. K.; Park, W.; Paul, S. F.; Peng, Y.-K. M.; Phillips, C. K.; Pinsker, R.; Probert, P. H.; Ramakrishnan, S.; Raman, R.; Redi, M.; Roquemore, A. L.; Rosenberg, A.; Ryan, P. M.; Sabbagh, S. A.; Schaffer, M.; Schooff, R. J.; Seraydarian, R.; Skinner, C. H.; Sontag, A. C.; Soukhanovskii, V.; Spaleta, J.; Stevenson, T.; Stutman, D.; Swain, D. W.; Synakowski, E.; Takase, Y.; Tang, X.; Taylor, G.; Timberlake, J.; Tritz, K. L.; Unterberg, E. A.; Von Halle, A.; Wilgen, J.; Williams, M.; Wilson, J. R.; Xu, X.; Zweben, S. J.; Akers, R.; Barry, R. E.; Beiersdorfer, P.; Bialek, J. M.; Blagojevic, B.; Bonoli, P. T.; Carter, M. D.; Davis, W.; Deng, B.; Dudek, L.; Egedal, J.; Ellis, R.; Finkenthal, M.; Foley, J.; Fredd, E.; Glasser, A.; Gibney, T.; Gilmore, M.; Goldston, R. J.; Hatcher, R. E.; Hawryluk, R. J.; Houlberg, W.; Harvey, R.; Jardin, S. C.; Hosea, J. C.; Ji, H.; Kalish, M.; Lowrance, J.; Lao, L. L.; Levinton, F. M.; Luhmann, N. C.; Marsala, R.; Mastravito, D.; Menon, M. M.; Mitarai, O.; Nagata, M.; Oliaro, G.; Parsells, R.; Peebles, T.; Peneflor, B.; Piglowski, D.; Porter, G. D.; Ram, A. K.; Rensink, M.; Rewoldt, G.; Robinson, J.; Roney, P.; Shaing, K.; Shiraiwa, S.; Sichta, P.; Stotler, D.; Stratton, B. C.; Vero, R.; Wampler, W. R.; Wurden, G. A.

    2003-12-01

    Research on the spherical torus (or spherical tokamak) (ST) is being pursued to explore the scientific benefits of modifying the field line structure from that in more moderate aspect ratio devices, such as the conventional tokamak. The ST experiments are being conducted in various US research facilities including the MA-class National Spherical Torus Experiment (NSTX) at Princeton, and three medium sized ST research facilities: PEGASUS at University of Wisconsin, HIT-II at University of Washington, and CDX-U at Princeton. In the context of the fusion energy development path being formulated in the US, an ST-based Component Test Facility (CTF) and, ultimately a Demo device, are being discussed. For these, it is essential to develop high performance, steady-state operational scenarios. The relevant scientific issues are energy confinement, MHD stability at high beta (bgr), non-inductive sustainment, Ohmic-solenoid-free start-up, and power and particle handling. In the confinement area, the NSTX experiments have shown that the confinement can be up to 50% better than the ITER-98-pby2 H-mode scaling, consistent with the requirements for an ST-based CTF and Demo. In NSTX, CTF-relevant average toroidal beta values bgrT of up to 35% with a near unity central bgrT have been obtained. NSTX will be exploring advanced regimes where bgrT up to 40% can be sustained through active stabilization of resistive wall modes. To date, the most successful technique for non-inductive sustainment in NSTX is the high beta poloidal regime, where discharges with a high non-inductive fraction (~60% bootstrap current+NBI current drive) were sustained over the resistive skin time. Research on radio-frequency (RF) based heating and current drive utilizing high harmonic fast wave and electron Bernstein wave is also pursued on NSTX, PEGASUS, and CDX-U. For non-inductive start-up, the coaxial helicity injection, developed in HIT/HIT-II, has been adopted on NSTX to test the method up to Ip ~ 500 k

  1. Oxygen consumption dynamics in steady-state tumour models.

    PubMed

    Grimes, David Robert; Fletcher, Alexander G; Partridge, Mike

    2014-09-01

    Oxygen levels in cancerous tissue can have a significant effect on treatment response: hypoxic tissue is both more radioresistant and more chemoresistant than well-oxygenated tissue. While recent advances in medical imaging have facilitated real-time observation of macroscopic oxygenation, the underlying physics limits the resolution to the millimetre domain, whereas oxygen tension varies over a micrometre scale. If the distribution of oxygen in the tumour micro-environment can be accurately estimated, then the effect of potential dose escalation to these hypoxic regions could be better modelled, allowing more realistic simulation of biologically adaptive treatments. Reaction-diffusion models are commonly used for modelling oxygen dynamics, with a variety of functional forms assumed for the dependence of oxygen consumption rate (OCR) on cellular status and local oxygen availability. In this work, we examine reaction-diffusion models of oxygen consumption in spherically and cylindrically symmetric geometries. We consider two different descriptions of oxygen consumption: one in which the rate of consumption is constant and one in which it varies with oxygen tension in a hyperbolic manner. In each case, we derive analytic approximations to the steady-state oxygen distribution, which are shown to closely match the numerical solutions of the equations and accurately predict the extent to which oxygen can diffuse. The derived expressions relate the limit to which oxygen can diffuse into a tissue to the OCR of that tissue. We also demonstrate that differences between these functional forms are likely to be negligible within the range of literature estimates of the hyperbolic oxygen constant, suggesting that the constant consumption rate approximation suffices for modelling oxygen dynamics for most values of OCR. These approximations also allow the rapid identification of situations where hyperbolic consumption forms can result in significant differences from constant

  2. Progress Towards High Performance, Steady-state Spherical Torus

    SciTech Connect

    M. Ono; M.G. Bell; R.E. Bell; T. Bigelow; M. Bitter; W. Blanchard; J. Boedo; C. Bourdelle; C. Bush; W. Choe; J. Chrzanowski; D.S. Darrow; S.J. Diem; R. Doerner; P.C. Efthimion; J.R. Ferron; R.J. Fonck; E.D. Fredrickson; G.D. Garstka; D.A. Gates; T. Gray; L.R. Grisham; W. Heidbrink; K.W. Hill; D. Hoffman; T.R. Jarboe; D.W. Johnson; R. Kaita; S.M. Kaye; C. Kessel; J.H. Kim; M.W. Kissick; S. Kubota; H.W. Kugel; B.P. LeBlanc; K. Lee; S.G. Lee; B.T. Lewicki; S. Luckhardt; R. Maingi; R. Majeski; J. Manickam; R. Maqueda; T.K. Mau; E. Mazzucato; S.S. Medley; J. Menard; D. Mueller; B.A. Nelson; C. Neumeyer; N. Nishino; C.N. Ostrander; D. Pacella; F. Paoletti; H.K. Park; W. Park; S.F. Paul; Y.-K. M. Peng; C.K. Phillips; R. Pinsker; P.H. Probert; S. Ramakrishnan; R. Raman; M. Redi; A.L. Roquemore; A. Rosenberg; P.M. Ryan; S.A. Sabbagh; M. Schaffer; R.J. Schooff; R. Seraydarian; C.H. Skinner; A.C. Sontag; V. Soukhanovskii; J. Spaleta; T. Stevenson; D. Stutman; D.W. Swain; E. Synakowski; Y. Takase; X. Tang; G. Taylor; J. Timberlake; K.L. Tritz; E.A. Unterberg; A. Von Halle; J. Wilgen; M. Williams; J.R. Wilson; X. Xu; S.J. Zweben; R. Akers; R.E. Barry; P. Beiersdorfer; J.M. Bialek; B. Blagojevic; P.T. Bonoli; M.D. Carter; W. Davis; B. Deng; L. Dudek; J. Egedal; R. Ellis; M. Finkenthal; J. Foley; E. Fredd; A. Glasser; T. Gibney; M. Gilmore; R.J. Goldston; R.E. Hatcher; R.J. Hawryluk; W. Houlberg; R. Harvey; S.C. Jardin; J.C. Hosea; H. Ji; M. Kalish; J. Lowrance; L.L. Lao; F.M. Levinton; N.C. Luhmann; R. Marsala; D. Mastravito; M.M. Menon; O. Mitarai; M. Nagata; G. Oliaro; R. Parsells; T. Peebles; B. Peneflor; D. Piglowski; G.D. Porter; A.K. Ram; M. Rensink; G. Rewoldt; P. Roney; K. Shaing; S. Shiraiwa; P. Sichta; D. Stotler; B.C. Stratton; R. Vero; W.R. Wampler; G.A. Wurden

    2003-10-02

    Research on the Spherical Torus (or Spherical Tokamak) is being pursued to explore the scientific benefits of modifying the field line structure from that in more moderate aspect-ratio devices, such as the conventional tokamak. The Spherical Tours (ST) experiments are being conducted in various U.S. research facilities including the MA-class National Spherical Torus Experiment (NSTX) at Princeton, and three medium-size ST research facilities: Pegasus at University of Wisconsin, HIT-II at University of Washington, and CDX-U at Princeton. In the context of the fusion energy development path being formulated in the U.S., an ST-based Component Test Facility (CTF) and, ultimately a Demo device, are being discussed. For these, it is essential to develop high-performance, steady-state operational scenarios. The relevant scientific issues are energy confinement, MHD stability at high beta (B), noninductive sustainment, ohmic-solenoid-free start-up, and power and particle handling. In the confinement area, the NSTX experiments have shown that the confinement can be up to 50% better than the ITER-98-pby2 H-mode scaling, consistent with the requirements for an ST-based CTF and Demo. In NSTX, CTF-relevant average toroidal beta values bT of up to 35% with the near unity central betaT have been obtained. NSTX will be exploring advanced regimes where bT up to 40% can be sustained through active stabilization of resistive wall modes. To date, the most successful technique for noninductive sustainment in NSTX is the high beta-poloidal regime, where discharges with a high noninductive fraction ({approx}60% bootstrap current + neutral-beam-injected current drive) were sustained over the resistive skin time. Research on radio-frequency-based heating and current drive utilizing HHFW (High Harmonic Fast Wave) and EBW (Electron Bernstein Wave) is also pursued on NSTX, Pegasus, and CDX-U. For noninductive start-up, the Coaxial Helicity Injection (CHI), developed in HIT/HIT-II, has been

  3. Progress towards high-performance, steady-state spherical torus

    SciTech Connect

    Ono, M.; Bell, M. G.; Bell, R. E.; Bigelow, T.; Bitter, M.; Blanchard, W.; Boedo, J.; Bourdelle, C.; Bush, C.; Choe, W.; Chrzanowski, J.; Darrow, D. S.; Diem, S. J.; Doerner, R.; Efthimion, P. C.; Ferron, J. R.; Fonck, R. J.; Fredrickson, E. D.; Garstka, G. D.; Gates, D A; Gray, T.; Grisham, L. R.; Heidbrink, W.; Hill, K. W.; Hoffman, D.; Jarboe, T. R.; Johnson, D. W.; Kaita, R.; Kaye, S. M.; Kessel, C.; Kim, J. H.; Kissick, M. W.; Kubota, S.; Kugel, H. W.; LeBlanc, B. P.; Lee, K.; Lee, S. G.; Lewicki, B. T.; Luckhardt, S.; Maingi, R.; Majeski, R.; Manickam, J.; Maqueda, R.; Mau, T. K.; Mazzucato, E.; Medley, S. S.; Menard, J.; Mueller, D.; Nelson, B. A.; Neumeyer, C.; Nishino, N.; Ostrander, C. N.; Pacella, D.; Paoletti, F.; Park, H. K.; Park, W.; Paul, S. F.; Peng, Y-K M.; Phillips, C. K.; Pinsker, R.; Probert, P. H.; Ramakrishnan, S.; Raman, R.; Redi, M.; Roquemore, A. L.; Rosenberg, A.; Ryan, P. M.; Sabbagh, S. A.; Schaffer, M.; Schooff, R. J.; Seraydarian, R.; Skinner, C. H.; Sontag, A. C.; Soukhanovskii, V.; Spaleta, J.; Stevenson, T.; Stutman, D.; Swain, D. W.; Synakowski, E.; Takase, Y.; Tang, X.; Taylor, G.; Timberlake, J.; Tritz, K. L.; Unterberg, E. A.; Halle, A. Von.; Wilgen, J.; Williams, M.; Wilson, J. R.; Xu, X.; Zweben, S. J.; Akers, R.; Barry, R. E.; Beiersdorfer, P.; Bialek, J. M.; Blagojevic, B.; Bonoli, P. T.; Carter, M. D.; Davis, W.; Deng, B.; Dudek, L.; Egedal, J.; Ellis, R.; Finkenthal, M.; Foley, J.; Fredd, E.; Glasser, A.; Gibney, T.; Gilmore, M.; Goldston, R. J.; Hatcher, R. E.; Hawryluk, R. J.; Houlberg, W.; Harvey, R.; Jardin, S. C.; Hosea, J. C.; Ji, H.; Kalish, M.; Lowrance, J.; Lao, L. L.; Levinton, F. M.; Luhmann, N. C.; Marsala, R.; Mastravito, D.; Menon, M. M.; Mitarai, O.; Nagata, M.; Oliaro, G.; Parsells, R.; Peebles, T.; Peneflor, B.; Piglowski, D.; Porter, G. D.; Ram, A. K.; Rensink, M.; Rewoldt, G.; Robinson, J.; Roney, P.; Shaing, K.; Shiraiwa, S.; Sichta, P.; Stotler, D.; Stratton, B. C.; Vero, R.; Wampler, W. R.; Wurden, G. A.

    2003-12-01

    Research on the spherical torus (or spherical tokamak) (ST) is being pursued to explore the scientific benefits of modifying the field line structure from that in more moderate aspect ratio devices, such as the conventional tokamak. The ST experiments are being conducted in various US research facilities including the MA-class National Spherical Torus Experiment (NSTX) at Princeton, and three medium sized ST research facilities: PEGASUS at University of Wisconsin, HIT-II at University of Washington, and CDX-U at Princeton. In the context of the fusion energy development path being formulated in the US, an ST-based Component Test Facility (CTF) and, ultimately a Demo device, are being discussed. For these, it is essential to develop high performance, steady-state operational scenarios. The relevant scientific issues are energy confinement, MHD stability at high beta (β), non-inductive sustainment, Ohmic-solenoid-free start-up, and power and particle handling. In the confinement area, the NSTX experiments have shown that the confinement can be up to 50% better than the ITER-98-pby2 H-mode scaling, consistent with the requirements for an ST-based CTF and Demo. In NSTX, CTF-relevant average toroidal beta values βT of up to 35% with a near unity central βT have been obtained. NSTX will be exploring advanced regimes where βT up to 40% can be sustained through active stabilization of resistive wall modes. To date, the most successful technique for non-inductive sustainment in NSTX is the high beta poloidal regime, where discharges with a high non-inductive fraction (~ 60% bootstrap current+NBI current drive) were sustained over the resistive skin time. Research on radio-frequency (RF) based heating and current drive utilizing high harmonic fast wave and electron Bernstein wave is also pursued on NSTX, PEGASUS, and CDX-U. For non-inductive start-up, the coaxial helicity injection, developed in HIT/HIT-II, has been adopted on NSTX to

  4. Progress Towards High-Performance, Steady-State Spherical Torus

    SciTech Connect

    Lawrence Livermore National Laboratory

    2004-01-04

    Research on the spherical torus (or spherical tokamak) (ST) is being pursued to explore the scientific benefits of modifying the field line structure from that in more moderate aspect ratio devices, such as the conventional tokamak. The ST experiments are being conducted in various US research facilities including the MA-class National Spherical Torus Experiment (NSTX) at Princeton, and three medium sized ST research facilities: PEGASUS at University of Wisconsin, HIT-II at University of Washington, and CDX-U at Princeton. In the context of the fusion energy development path being formulated in the US, an ST-based Component Test Facility (CTF) and, ultimately a Demo device, are being discussed. For these, it is essential to develop high performance, steady-state operational scenarios. The relevant scientific issues are energy confinement, MHD stability at high beta ({beta}), non-inductive sustainment, Ohmic-solenoid-free start-up, and power and particle handling. In the confinement area, the NSTX experiments have shown that the confinement can be up to 50% better than the ITER-98-pby2 H-mode scaling, consistent with the requirements for an ST-based CTF and Demo. In NSTX, CTF-relevant average toroidal beta values {beta}{sub T} of up to 35% with a near unity central {beta}{sub T} have been obtained. NSTX will be exploring advanced regimes where {beta}{sub T} up to 40% can be sustained through active stabilization of resistive wall modes. To date, the most successful technique for non-inductive sustainment in NSTX is the high beta poloidal regime, where discharges with a high non-inductive fraction ({approx}60% bootstrap current+NBI current drive) were sustained over the resistive skin time. Research on radio-frequency (RF) based heating and current drive utilizing high harmonic fastwave and electron Bernstein wave is also pursued on NSTX, PEGASUS, and CDX-U. For non-inductive start-up, the coaxial helicity injection, developed in HIT/HIT-II, has been adopted on NSTX

  5. Progress towards high-performance, steady-state spherical torus.

    SciTech Connect

    Lee, S.G; Kugel, W.; Efthimion, P. C.; Kissick, M. W.; Bourdelle, C.; Kim, J.H; Gray, T.; Garstka, G. D.; Fonck, R. J.; Doerner, R.; Diem, S.J.; Pacella, D.; Nishino, N.; Ferron, J. R.; Skinner, C. H.; Stutman, D.; Soukhanovskii, V.; Choe, W.; Chrzanowski, J.; Mau, T.K.; Bell, Michael G.; Raman, R.; Peng, Y-K. M.; Ono, M.; Park, W.; Hoffman, D.; Maqueda, R.; Kaye, S. M.; Kaita, R.; Jarboe, T.R.; Hill, K.W.; Heidbrink, W.; Spaleta, J.; Sontag, A.C; Seraydarian, R.; Schooff, R.J.; Sabbagh, S.A.; Menard, J.; Mazzucato, E.; Lee, K.; LeBlanc, B.; Probert, P. H.; Blanchard, W.; Wampler, William R.; Swain, D. W.; Ryan, P.M.; Rosenberg, A.; Ramakrishnan, S.; Phillips, C.K.; Park, H.K.; Roquemore, A. L.; Paoletti, F.; Medley, S. S.; Fredrickson, E. D.; Kessel, C. E.; Stevenson, T.; Darrow, D. S.; Majeski, R.; Bitter, M.; Neumeyer, C.; Nelson, B.A.; Paul, S. F.; Manickam, J.; Ostrander, C. N.; Mueller, D.; Lewicki, B.T; Luckhardt, S.; Johnson, D.W.; Grisham, L.R.; Kubota, Shigeru; Gates, D.A.; Bush, C.; Synakowski, E.J.; Schaffer, M.; Boedo, J.; Maingi, R.; Redi, M.; Pinsker, R.; Bigelow, T.; Bell, R. E.

    2004-06-01

    Research on the spherical torus (or spherical tokamak) (ST) is being pursued to explore the scientific benefits of modifying the field line structure from that in more moderate aspect ratio devices, such as the conventional tokamak. The ST experiments are being conducted in various US research facilities including the MA-class National Spherical Torus Experiment (NSTX) at Princeton, and three medium sized ST research facilities: PEGASUS at University of Wisconsin, HIT-II at University of Washington, and CDX-U at Princeton. In the context of the fusion energy development path being formulated in the US, an ST-based Component Test Facility (CTF) and, ultimately a Demo device, are being discussed. For these, it is essential to develop high performance, steady-state operational scenarios. The relevant scientific issues are energy confinement, MHD stability at high beta ({beta}), non-inductive sustainment, Ohmic-solenoid-free start-up, and power and particle handling. In the confinement area, the NSTX experiments have shown that the confinement can be up to 50% better than the ITER-98-pby2 H-mode scaling, consistent with the requirements for an ST-based CTF and Demo. In NSTX, CTF-relevant average toroidal beta values {beta}{sub T} of up to 35% with a near unity central {beta}{sub T} have been obtained. NSTX will be exploring advanced regimes where {beta}{sub T} up to 40% can be sustained through active stabilization of resistive wall modes. To date, the most successful technique for non-inductive sustainment in NSTX is the high beta poloidal regime, where discharges with a high non-inductive fraction ({approx}60% bootstrap current+NBI current drive) were sustained over the resistive skin time. Research on radio-frequency (RF) based heating and current drive utilizing high harmonic fast wave and electron Bernstein wave is also pursued on NSTX, PEGASUS, and CDX-U. For non-inductive start-up, the coaxial helicity injection, developed in HIT/HIT-II, has been adopted on NSTX

  6. Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling

    PubMed Central

    Nakahigashi, Kenji; Takai, Yuki; Kimura, Michiko; Abe, Nozomi; Nakayashiki, Toru; Shiwa, Yuh; Yoshikawa, Hirofumi; Wanner, Barry L.; Ishihama, Yasushi; Mori, Hirotada

    2016-01-01

    Tetracycline-inhibited ribosome profiling (TetRP) provides a powerful new experimental tool for comprehensive genome-wide identification of translation initiation sites in bacteria. We validated TetRP by confirming the translation start sites of protein-coding genes in accordance with the 2006 version of Escherichia coli K-12 annotation record (GenBank U00096.2) and found ∼150 new start sites within 60 nucleotides of the annotated site. This analysis revealed 72 per cent of the genes whose initiation site annotations were changed from the 2006 GenBank record to the newer 2014 annotation record (GenBank U00096.3), indicating a high sensitivity. Also, results from reporter fusion and proteomics of N-terminally enriched peptides showed high specificity of the TetRP results. In addition, we discovered over 300 translation start sites within non-coding, intergenic regions of the genome, using a threshold that retains ∼2,000 known coding genes. While some appear to correspond to pseudogenes, others may encode small peptides or have previously unforeseen roles. In summary, we showed that ribosome profiling upon translation inhibition by tetracycline offers a simple, reliable and comprehensive experimental tool for precise annotation of translation start sites of expressed genes in bacteria. PMID:27013550

  7. 40 CFR 92.130 - Determination of steady-state concentrations.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...

  8. 40 CFR 92.130 - Determination of steady-state concentrations.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...

  9. Steady-State Axial Temperature and Flow Velocity in Triga Channel.

    Energy Science and Technology Software Center (ESTSC)

    2007-02-28

    Version 00 TRISTAN-IJS is a computer program for calculating steady-state axial temperature distribution and flow velocity through a vertical coolant channel in low power TRIGA reactor core, cooled by natural circulation. It is designed for steady-state thermohydraulic analysis of TRIGA research reactors operating at a low power level of 1-2 MW.

  10. 40 CFR 92.130 - Determination of steady-state concentrations.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...

  11. 40 CFR 92.130 - Determination of steady-state concentrations.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...

  12. 40 CFR 92.130 - Determination of steady-state concentrations.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...

  13. 40 CFR 85.2225 - Steady state test exhaust analysis system-EPA 91.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 40 Protection of Environment 18 2010-07-01 2010-07-01 false Steady state test exhaust analysis... Performance Warranty Short Tests § 85.2225 Steady state test exhaust analysis system—EPA 91. (a) Special... feet (above mean sea level). At any given altitude and ambient conditions specified in paragraphs...

  14. 40 CFR 85.2225 - Steady state test exhaust analysis system-EPA 91.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 40 Protection of Environment 18 2011-07-01 2011-07-01 false Steady state test exhaust analysis... Performance Warranty Short Tests § 85.2225 Steady state test exhaust analysis system—EPA 91. (a) Special... feet (above mean sea level). At any given altitude and ambient conditions specified in paragraphs...

  15. NEW APPROACHES: Keeping moving to stay where you are: energy flows and steady states

    NASA Astrophysics Data System (ADS)

    Boohan, Richard

    1996-01-01

    Many systems need to be actively maintained to keep them in a steady state - centrally-heated rooms, living things, the Earth. The use of commercially available 'temperature sensitive film' allows qualitative ideas about steady-state systems to be easily investigated by pupils from lower secondary school onwards. Some examples of more advanced quantitative ideas which can be developed are given.

  16. The steady-state phase distribution of the motor switch complex model of Halobacterium salinarum.

    PubMed

    del Rosario, Ricardo C H; Diener, Francine; Diener, Marc; Oesterhelt, Dieter

    2009-12-01

    Steady-state analysis is performed on the kinetic model for the switch complex of the flagellar motor of Halobacterium salinarum (Nutsch et al.). The existence and uniqueness of a positive steady-state of the system is established and it is demonstrated why the steady-state is centered around the competent phase, a state of the motor in which it is able to respond to light stimuli. It is also demonstrated why the steady-state shifts to the refractory phase when the steady-state value of the response regulator CheYP increases. This work is one aspect of modeling in systems biology wherein the mathematical properties of a model are established. PMID:19857501

  17. Inhibition of tumor cell growth by Sigma1 ligand mediated translational repression

    SciTech Connect

    Kim, Felix J.; Schrock, Joel M.; Spino, Christina M.; Marino, Jacqueline C.; Pasternak, Gavril W.

    2012-09-21

    Highlights: Black-Right-Pointing-Pointer Sigma1 ligand treatment mediates decrease in tumor cell mass. Black-Right-Pointing-Pointer Identification of a Sigma1 ligand with reversible translational repressor actions. Black-Right-Pointing-Pointer Demonstration of a role for Sigma1 in cellular protein synthesis. -- Abstract: Treatment with sigma1 receptor (Sigma1) ligands can inhibit cell proliferation in vitro and tumor growth in vivo. However, the cellular pathways engaged in response to Sigma1 ligand treatment that contribute to these outcomes remain largely undefined. Here, we show that treatment with putative antagonists of Sigma1 decreases cell mass. This effect corresponds with repressed cap-dependent translation initiation in multiple breast and prostate cancer cell lines. Sigma1 antagonist treatment suppresses phosphorylation of translational regulator proteins p70S6K, S6, and 4E-BP1. RNAi-mediated knockdown of Sigma1 also results in translational repression, consistent with the effects of antagonist treatment. Sigma1 antagonist mediated translational repression and decreased cell size are both reversible. Together, these data reveal a role for Sigma1 in tumor cell protein synthesis, and demonstrate that small molecule Sigma1 ligands can be used as modulators of protein translation.

  18. Steady- and non-steady-state carbonate-silicate controls on atmospheric CO2

    USGS Publications Warehouse

    Sundquist, E.T.

    1991-01-01

    Two contrasting hypotheses have recently been proposed for the past long-term relation between atmospheric CO2 and the carbonate-silicate geochemical cycle. One approach (Berner, 1990) suggests that CO2 levels have varied in a manner that has maintained chemical weathering and carbonate sedimentation at a steady state with respect to tectonically controlled decarbonation reactions. A second approach (Raymo et al., 1988), applied specificlly to the late Cenozoic, suggests a decrease in CO2 caused by an uplift-induced increase in chemical weathering, without regard to the rate of decarbonation. According to the steady-state (first) hypothesis, increased weathering and carbonate sedimentation are generally associated with increasing atmospheric CO2, whereas the uplift (second) hypothesis implies decreasing CO2 under the same conditions. An ocean-atmosphere-sediment model has been used to assess the response of atmospheric CO2 and carbonate sedimentation to global perturbations in chemical weathering and decarbonation reactions. Although this assessment is theoretical and cannot yet be related to the geologic record, the model simulations compare steady-state and non-steady-state carbonate-silicate cycle response. The e-fold response time of the 'CO2-weathering' feedback mechanism is between 300 and 400 ka. The response of carbonate sedimentation is much more rapid. These response times provide a measure of the strength of steady-state assumptions, and imply that certain systematic relations are sustained throughout steady-state and non-steady-state scenarios for the carbonate-silicate cycle. The simulations suggest that feedbacks can maintain the system near a steady state, but that non-steady-state effects may contribute to long-term trends. The steady-state and uplift hypotheses are not necessarily incompatible over time scales of a few million years. ?? 1991.

  19. Modulation of the kinetics and the steady-state level of intermediates of mitochondrial coupled reactions by inhibitors and uncouplers.

    PubMed

    Yagi, T; Matsuno-Yagi, A; Vik, S B; Hatefi, Y

    1984-02-28

    In oxidative phosphorylation and ATP-driven uphill electron transfer from succinate to NAD, double-reciprocal plots of rates vs. substrate concentrations of the energy-driven reactions are a family of parallel lines at several fixed subsaturating concentrations of the substrates or at several moderate concentrations of the inhibitors of the energy-yielding reactions. Thus, as shown elsewhere [Hatefi, Y., Yagi, T., Phelps, D. C., Wong, S.-Y., Vik, S. B., & Galante, Y. M. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 1756-1760], partial uncoupling decreases the Vappmax and increases the Kappm of the substrates of the energy-driven reactions, resulting in a decrease of Vmax/Km as a function of increased uncoupling. However, partial limitation of the flow rates of the energy-yielding reactions decreases both the Vappmax and the Kappm of the substrates of the energy-driven reactions, resulting in no change in Vmax/Km. This is true as long as the rate limitation is moderate (e.g., less than 60%), under which conditions the steady-state membrane potential (delta psi) remains essentially unchanged. At high inhibition of the energy-yielding reactions, or at moderate inhibition in the presence of low levels of an uncoupler to cause partial uncoupling, then the family of double-reciprocal plots is no longer parallel and tends to converge toward the left. Under these conditions, steady-state delta psi and Vmax/Km also decrease as inhibition is increased. The relationship between the magnitude of steady-state delta psi and the rate of the energy-driven reaction was studied in oxidative phosphorylation, ATP-driven electron transfer from succinate to NAD, and respiration-driven uniport calcium transport by intact mitochondria.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:6712922

  20. The 40-Hz auditory steady-state response: a selective biomarker for cortical NMDA function.

    PubMed

    Sivarao, Digavalli V

    2015-05-01

    When subjected to a phasic input, sensory cortical neurons display a remarkable ability to entrain faithfully to the driving stimuli. The entrainment to rhythmic sound stimuli is often referred to as the auditory steady-state response (ASSR) and can be captured using noninvasive techniques, such as scalp-recorded electroencephalography (EEG). An ASSR to a driving frequency of approximately 40 Hz is particularly interesting in that it shows, in relative terms, maximal power, synchrony, and synaptic activity. Moreover, the 40-Hz ASSR has been consistently found to be abnormal in schizophrenia patients across multiple studies. The nature of the reported abnormality has been less consistent; while most studies report a deficit in entrainment, several studies have reported increased signal power, particularly when there are concurrent positive symptoms, such as auditory hallucinations. However, the neuropharmacological basis for the 40-Hz ASSR, as well as its dysfunction in schizophrenia, has been unclear until recently. On the basis of several recent reports, it is argued that the 40-Hz ASSR represents a specific marker for cortical NMDA transmission. If confirmed, the 40-Hz ASSR may be a simple and easy-to-access pharmacodynamic biomarker for testing the integrity of cortical NMDA neurotransmission that is robustly translational across species. PMID:25809615

  1. Steady-state kinetics and chemical mechanism of octopus hepatopancreatic glutathione transferase.

    PubMed Central

    Tang, S S; Chang, G G

    1995-01-01

    The kinetic mechanism of glutathione S-transferase (GST) from Octopus vulgaris hepatopancreas was investigated by steady-state analysis. Initial-velocity studies showed an intersecting pattern, which suggests a sequential kinetic mechanism for the enzyme. Product-inhibition patterns by chloride and the conjugate product were all non-competitive with respect to glutathione or 1-chloro-2,4-dinitrobenzene (CDNB), which indicates that the octopus digestive gland GST conforms to a steady-state sequential random Bi Bi kinetic mechanism. Dead-end inhibition patterns indicate that ethacrynic acid ([2,3-dichloro-4-(2-methyl-enebutyryl) phenoxy]acetic acid) binds at the hydrophobic H-site, norophthalmic acid (gamma-glutamylalanylglycine) binds at the glutathione G-site, and glutathione-ethacrynate conjugate occupied both H- and G-sites of the enzyme. The chemical mechanism of the enzyme was examined by pH and kinetic solvent-isotope effects. At pH (and p2H) = 8.011, in which kcat. was independent of pH or p2H, the solvent isotope effects on V and V/KmGSH were near unity, in the range 1.069-1.175. An inverse isotope effect was observed for V/KmCDNB (0.597), presumably resulting from the hydrogen-bonding of enzyme-bound glutathione, which has pKa of 6.83 +/- 0.04, a value lower by 2.34 pH units than the pKa of glutathione in aqueous solution. This lowering of the pKa value for the sulphydryl group of the bound glutathione was presumably due to interaction with the active site Tyr7, which had a pKa value of 8.46 +/- 0.09 that was raised to 9.63 +/- 0.08 in the presence of glutathione thiolate. Subsequent chemical reaction involves attacking of thiolate anion at the electrophilic substrate with the formation of a negatively charged Meisenheimer complex, which is the rate-limiting step of the reaction. Images Scheme 2 PMID:7619078

  2. Translation control during prolonged mTORC1 inhibition mediated by 4E-BP3.

    PubMed

    Tsukumo, Yoshinori; Alain, Tommy; Fonseca, Bruno D; Nadon, Robert; Sonenberg, Nahum

    2016-01-01

    Targeting mTORC1 is a highly promising strategy in cancer therapy. Suppression of mTORC1 activity leads to rapid dephosphorylation of eIF4E-binding proteins (4E-BP1-3) and subsequent inhibition of mRNA translation. However, how the different 4E-BPs affect translation during prolonged use of mTOR inhibitors is not known. Here we show that the expression of 4E-BP3, but not that of 4E-BP1 or 4E-BP2, is transcriptionally induced during prolonged mTORC1 inhibition in vitro and in vivo. Mechanistically, our data reveal that 4E-BP3 expression is controlled by the transcription factor TFE3 through a cis-regulatory element in the EIF4EBP3 gene promoter. CRISPR/Cas9-mediated EIF4EBP3 gene disruption in human cancer cells mitigated the inhibition of translation and proliferation caused by prolonged treatment with mTOR inhibitors. Our findings show that 4E-BP3 is an important effector of mTORC1 and a robust predictive biomarker of therapeutic response to prolonged treatment with mTOR-targeting drugs in cancer. PMID:27319316

  3. Translation control during prolonged mTORC1 inhibition mediated by 4E-BP3

    PubMed Central

    Tsukumo, Yoshinori; Alain, Tommy; Fonseca, Bruno D.; Nadon, Robert; Sonenberg, Nahum

    2016-01-01

    Targeting mTORC1 is a highly promising strategy in cancer therapy. Suppression of mTORC1 activity leads to rapid dephosphorylation of eIF4E-binding proteins (4E-BP1–3) and subsequent inhibition of mRNA translation. However, how the different 4E-BPs affect translation during prolonged use of mTOR inhibitors is not known. Here we show that the expression of 4E-BP3, but not that of 4E-BP1 or 4E-BP2, is transcriptionally induced during prolonged mTORC1 inhibition in vitro and in vivo. Mechanistically, our data reveal that 4E-BP3 expression is controlled by the transcription factor TFE3 through a cis-regulatory element in the EIF4EBP3 gene promoter. CRISPR/Cas9-mediated EIF4EBP3 gene disruption in human cancer cells mitigated the inhibition of translation and proliferation caused by prolonged treatment with mTOR inhibitors. Our findings show that 4E-BP3 is an important effector of mTORC1 and a robust predictive biomarker of therapeutic response to prolonged treatment with mTOR-targeting drugs in cancer. PMID:27319316

  4. HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation

    PubMed Central

    Mercenne, Gaëlle; Bernacchi, Serena; Richer, Delphine; Bec, Guillaume; Henriet, Simon; Paillart, Jean-Christophe; Marquet, Roland

    2010-01-01

    The HIV-1 viral infectivity factor (Vif) allows productive infection of non-permissive cells (including most natural HIV-1 targets) by counteracting the cellular cytosine deaminases APOBEC-3G (hA3G) and hA3F. The Vif-induced degradation of these restriction factors by the proteasome has been extensively studied, but little is known about the translational repression of hA3G and hA3F by Vif, which has also been proposed to participate in Vif function. Here, we studied Vif binding to hA3G mRNA and its role in translational repression. Filter binding assays and fluorescence titration curves revealed that Vif tightly binds to hA3G mRNA. Vif overall binding affinity was higher for the 3′UTR than for the 5′UTR, even though this region contained at least one high affinity Vif binding site (apparent Kd = 27 ± 6 nM). Several Vif binding sites were identified in 5′ and 3′UTRs using RNase footprinting. In vitro translation evidenced that Vif inhibited hA3G translation by two mechanisms: a main time-independent process requiring the 5′UTR and an additional time-dependent, UTR-independent process. Results using a Vif protein mutated in the multimerization domain suggested that the molecular mechanism of translational control is more complicated than a simple physical blockage of scanning ribosomes. PMID:19910370

  5. HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation.

    PubMed

    Mercenne, Gaëlle; Bernacchi, Serena; Richer, Delphine; Bec, Guillaume; Henriet, Simon; Paillart, Jean-Christophe; Marquet, Roland

    2010-01-01

    The HIV-1 viral infectivity factor (Vif) allows productive infection of non-permissive cells (including most natural HIV-1 targets) by counteracting the cellular cytosine deaminases APOBEC-3G (hA3G) and hA3F. The Vif-induced degradation of these restriction factors by the proteasome has been extensively studied, but little is known about the translational repression of hA3G and hA3F by Vif, which has also been proposed to participate in Vif function. Here, we studied Vif binding to hA3G mRNA and its role in translational repression. Filter binding assays and fluorescence titration curves revealed that Vif tightly binds to hA3G mRNA. Vif overall binding affinity was higher for the 3'UTR than for the 5'UTR, even though this region contained at least one high affinity Vif binding site (apparent K(d) = 27 +/- 6 nM). Several Vif binding sites were identified in 5' and 3'UTRs using RNase footprinting. In vitro translation evidenced that Vif inhibited hA3G translation by two mechanisms: a main time-independent process requiring the 5'UTR and an additional time-dependent, UTR-independent process. Results using a Vif protein mutated in the multimerization domain suggested that the molecular mechanism of translational control is more complicated than a simple physical blockage of scanning ribosomes. PMID:19910370

  6. Steady State Performance Characteristics of Micropolar Lubricated Hydrodynamic Journal Bearings with Flexible Liner

    NASA Astrophysics Data System (ADS)

    Bansal, Pikesh; Chattopadhyay, Ajit Kumar; Agrawal, Vishnu Prakash

    2016-04-01

    The aim of the present study is to theoretically determine the steady state characteristics of hydrodynamic oil journal bearings considering the effect of deformation of liner and with micropolar lubrication. Modified Reynolds equation based on micropolar lubrication theory is solved using finite difference method to obtain steady state film pressures. Minimum film thickness is calculated taking into consideration the deformation of the liner. Parametric study has been conducted and steady state characteristics for journal bearing with elasticity of bearing liner are plotted for various values of eccentricity ratio, deformation factor, characteristic length and coupling number.

  7. The condensation of ampholytes in steady state moving boundaries - Analysis by computer simulation

    NASA Technical Reports Server (NTRS)

    Mosher, Richard A.; Thormann, Wolfgang

    1986-01-01

    A digital simulation of the behavior of amphoteric sample components in moving steady state boundaries is presented. Complete computer simulation data, including profiles of concentration, conductivity and pH as functions of time, are given for both cationic and anionic electrolyte configurations which incorporate one amphoteric sample constituent. The condensation of ampholytes in steady state moving boundaries is shown to proceed via an isotachophoretic mechanism and not by isoelectric focusing. Mobility (velocity) relationships necessary for sample components to form steady state zones are discussed.

  8. Type I and Type II Interferons Inhibit the Translation of Murine Norovirus Proteins▿

    PubMed Central

    Changotra, Harish; Jia, Yali; Moore, Tara N.; Liu, Guangliang; Kahan, Shannon M.; Sosnovtsev, Stanislav V.; Karst, Stephanie M.

    2009-01-01

    Human noroviruses are responsible for more than 95% of nonbacterial epidemic gastroenteritis worldwide. Both onset and resolution of disease symptoms are rapid, suggesting that components of the innate immune response are critical in norovirus control. While the study of the human noroviruses has been hampered by the lack of small animal and tissue culture systems, our recent discovery of a murine norovirus (MNV) and its in vitro propagation have allowed us to begin addressing norovirus replication strategies and immune responses to norovirus infection. We have previously demonstrated that interferon responses are critical to control MNV-1 infection in vivo and to directly inhibit viral replication in vitro. We now extend these studies to define the molecular basis for interferon-mediated inhibition. Viral replication intermediates were not detected in permissive cells pretreated with type I interferon after either infection or transfection of virion-associated RNA, demonstrating a very early block to virion production that is after virus entry and uncoating. A similar absence of viral replication intermediates was observed in infected primary macrophages and dendritic cells pretreated with type I IFN. This was not due to degradation of incoming genomes in interferon-pretreated cells since similar levels of genomes were present in untreated and pretreated cells through 6 h of infection, and these genomes retained their integrity. Surprisingly, this block to the translation of viral proteins was not dependent on the well-characterized interferon-induced antiviral molecule PKR. Similar results were observed in cells pretreated with type II interferon, except that the inhibition of viral translation was dependent on PKR. Thus, both type I and type II interferon signaling inhibit norovirus translation in permissive myeloid cells, but they display distinct dependence on PKR for this inhibition. PMID:19297466

  9. Catalytic properties of cysteine proteinases from Trypanosoma cruzi and Leishmania infantum: a pre-steady-state and steady-state study.

    PubMed

    Ascenzi, Paolo; Bocedi, Alessio; Visca, Paolo; Antonini, Giovanni; Gradoni, Luigi

    2003-09-26

    Cysteine proteinases are relevant to several aspects of the parasite life cycle and of parasite-host relationship. Moreover, they appear as promising targets for antiparasite chemotherapy. Here, the first quantitative investigation on the steady-state and pre-steady-state kinetics of the papain-like cysteine proteinases from epimastigotes of Trypanosoma cruzi (cruzipain), the agent of Chagas' disease, and from promastigotes of Leishmania infantum, an agent of visceral and cutaneous leishmaniases, is reported. The results indicate that kinetics for the parasite proteinase catalyzed hydrolysis of N-alpha-benzyloxycarbonyl-L-phenylalanyl-L-arginine-(7-amino-4-methylcoumarin) may be consistently fitted to the minimum three-step mechanism involving the acyl.enzyme intermediate E.P: [mechanism: see text] At neutral pH, the k(+3) step (deacylation process) is rate limiting in enzyme catalysis, whereas, at pH<6, the k(+2) step (acylation process) becomes rate limiting. This illustrates the potential danger in interpreting both kcat versus pH profile, given that the acylation or the deacylation step is rate limiting throughout the whole pH range explored, and Km as the true affinity constant for the E:S complex formation. Comparison with the steady-state and pre-steady-state kinetics of homologous plant enzymes suggests that the parasite cysteine proteinase catalytic behavior appears to be of general significance. PMID:12963041

  10. Steady-state hydrogen peroxide induces glycolysis in Staphylococcus aureus and Pseudomonas aeruginosa.

    PubMed

    Deng, Xin; Liang, Haihua; Ulanovskaya, Olesya A; Ji, Quanjiang; Zhou, Tianhong; Sun, Fei; Lu, Zhike; Hutchison, Alan L; Lan, Lefu; Wu, Min; Cravatt, Benjamin F; He, Chuan

    2014-07-01

    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from human pathogens Staphylococcus aureus and Pseudomonas aeruginosa can be readily inhibited by reactive oxygen species (ROS)-mediated direct oxidation of their catalytic active cysteines. Because of the rapid degradation of H2O2 by bacterial catalase, only steady-state but not one-dose treatment with H2O2 rapidly induces glycolysis and the pentose phosphate pathway (PPP). We conducted transcriptome sequencing (RNA-seq) analyses to globally profile the bacterial transcriptomes in response to a steady level of H2O2, which revealed profound transcriptional changes, including the induced expression of glycolytic genes in both bacteria. Our results revealed that the inactivation of GAPDH by H2O2 induces metabolic levels of glycolysis and the PPP; the elevated levels of fructose 1,6-biphosphate (FBP) and 2-keto-3-deoxy-6-phosphogluconate (KDPG) lead to dissociation of their corresponding glycolytic repressors (GapR and HexR, respectively) from their cognate promoters, thus resulting in derepression of the glycolytic genes to overcome H2O2-stalled glycolysis in S. aureus and P. aeruginosa, respectively. Both GapR and HexR may directly sense oxidative stresses, such as menadione. PMID:24769698