Science.gov

Sample records for intraflagellar transport particle

  1. Intraflagellar transport: keeping the motors coordinated.

    PubMed

    Cole, Douglas G

    2005-10-11

    Intraflagellar transport is a conserved delivery system that services eukaryotic cilia and flagella. Recent work in the nematode Caenorhabditis elegans has identified proteins required for the functional coordination of intraflagellar transport motors and their cargoes. PMID:16213810

  2. Dissecting the Sequential Assembly and Localization of Intraflagellar Transport Particle Complex B in Chlamydomonas

    PubMed Central

    Richey, Elizabeth A.; Qin, Hongmin

    2012-01-01

    Intraflagellar transport (IFT), the key mechanism for ciliogenesis, involves large protein particles moving bi-directionally along the entire ciliary length. IFT particles contain two large protein complexes, A and B, which are constructed with proteins in a core and several peripheral proteins. Prior studies have shown that in Chlamydomonas reinhardtii, IFT46, IFT52, and IFT88 directly interact with each other and are in a subcomplex of the IFT B core. However, ift46, bld1, and ift88 mutants differ in phenotype as ift46 mutants are able to form short flagella, while the other two lack flagella completely. In this study, we investigated the functional differences of these individual IFT proteins contributing to complex B assembly, stability, and basal body localization. We found that complex B is completely disrupted in bld1 mutant, indicating an essential role of IFT52 for complex B core assembly. Ift46 mutant cells are capable of assembling a relatively intact complex B, but such complex is highly unstable and prone to degradation. In contrast, in ift88 mutant cells the complex B core still assembles and remains stable, but the peripheral proteins no longer attach to the B core. Moreover, in ift88 mutant cells, while complex A and the anterograde IFT motor FLA10 are localized normally to the transition fibers, complex B proteins instead are accumulated at the proximal ends of the basal bodies. In addition, in bld2 mutant, the IFT complex B proteins still localize to the proximal ends of defective centrioles which completely lack transition fibers. Taken together, these results revealed a step-wise assembly process for complex B, and showed that the complex first localizes to the proximal end of the centrioles and then translocates onto the transition fibers via an IFT88-dependent mechanism. PMID:22900094

  3. Single-particle imaging reveals intraflagellar transport-independent transport and accumulation of EB1 in Chlamydomonas flagella.

    PubMed

    Harris, J Aaron; Liu, Yi; Yang, Pinfen; Kner, Peter; Lechtreck, Karl F

    2016-01-15

    The microtubule (MT) plus-end tracking protein EB1 is present at the tips of cilia and flagella; end-binding protein 1 (EB1) remains at the tip during flagellar shortening and in the absence of intraflagellar transport (IFT), the predominant protein transport system in flagella. To investigate how EB1 accumulates at the flagellar tip, we used in vivo imaging of fluorescent protein-tagged EB1 (EB1-FP) in Chlamydomonas reinhardtii. After photobleaching, the EB1 signal at the flagellar tip recovered within minutes, indicating an exchange with unbleached EB1 entering the flagella from the cell body. EB1 moved independent of IFT trains, and EB1-FP recovery did not require the IFT pathway. Single-particle imaging showed that EB1-FP is highly mobile along the flagellar shaft and displays a markedly reduced mobility near the flagellar tip. Individual EB1-FP particles dwelled for several seconds near the flagellar tip, suggesting the presence of stable EB1 binding sites. In simulations, the two distinct phases of EB1 mobility are sufficient to explain its accumulation at the tip. We propose that proteins uniformly distributed throughout the cytoplasm like EB1 accumulate locally by diffusion and capture; IFT, in contrast, might be required to transport proteins against cellular concentration gradients into or out of cilia. PMID:26631555

  4. Single-particle imaging reveals intraflagellar transport–independent transport and accumulation of EB1 in Chlamydomonas flagella

    PubMed Central

    Harris, J. Aaron; Liu, Yi; Yang, Pinfen; Kner, Peter; Lechtreck, Karl F.

    2016-01-01

    The microtubule (MT) plus-end tracking protein EB1 is present at the tips of cilia and flagella; end-binding protein 1 (EB1) remains at the tip during flagellar shortening and in the absence of intraflagellar transport (IFT), the predominant protein transport system in flagella. To investigate how EB1 accumulates at the flagellar tip, we used in vivo imaging of fluorescent protein–tagged EB1 (EB1-FP) in Chlamydomonas reinhardtii. After photobleaching, the EB1 signal at the flagellar tip recovered within minutes, indicating an exchange with unbleached EB1 entering the flagella from the cell body. EB1 moved independent of IFT trains, and EB1-FP recovery did not require the IFT pathway. Single-particle imaging showed that EB1-FP is highly mobile along the flagellar shaft and displays a markedly reduced mobility near the flagellar tip. Individual EB1-FP particles dwelled for several seconds near the flagellar tip, suggesting the presence of stable EB1 binding sites. In simulations, the two distinct phases of EB1 mobility are sufficient to explain its accumulation at the tip. We propose that proteins uniformly distributed throughout the cytoplasm like EB1 accumulate locally by diffusion and capture; IFT, in contrast, might be required to transport proteins against cellular concentration gradients into or out of cilia. PMID:26631555

  5. Functional coordination of intraflagellar transport motors.

    PubMed

    Ou, Guangshuo; Blacque, Oliver E; Snow, Joshua J; Leroux, Michel R; Scholey, Jonathan M

    2005-07-28

    Cilia have diverse roles in motility and sensory reception, and defects in cilia function contribute to ciliary diseases such as Bardet-Biedl syndrome (BBS). Intraflagellar transport (IFT) motors assemble and maintain cilia by transporting ciliary precursors, bound to protein complexes called IFT particles, from the base of the cilium to their site of incorporation at the distal tip. In Caenorhabditis elegans, this is accomplished by two IFT motors, kinesin-II and osmotic avoidance defective (OSM)-3 kinesin, which cooperate to form two sequential anterograde IFT pathways that build distinct parts of cilia. By observing the movement of fluorescent IFT motors and IFT particles along the cilia of numerous ciliary mutants, we identified three genes whose protein products mediate the functional coordination of these motors. The BBS proteins BBS-7 and BBS-8 are required to stabilize complexes of IFT particles containing both of the IFT motors, because IFT particles in bbs-7 and bbs-8 mutants break down into two subcomplexes, IFT-A and IFT-B, which are moved separately by kinesin-II and OSM-3 kinesin, respectively. A conserved ciliary protein, DYF-1, is specifically required for OSM-3 kinesin to dock onto and move IFT particles, because OSM-3 kinesin is inactive and intact IFT particles are moved by kinesin-II alone in dyf-1 mutants. These findings implicate BBS ciliary disease proteins and an OSM-3 kinesin activator in the formation of two IFT pathways that build functional cilia. PMID:16049494

  6. Intraflagellar transport complex structure and cargo interactions

    PubMed Central

    2013-01-01

    Intraflagellar transport (IFT) is required for the assembly and maintenance of cilia, as well as the proper function of ciliary motility and signaling. IFT is powered by molecular motors that move along the axonemal microtubules, carrying large complexes of IFT proteins that travel together as so-called trains. IFT complexes likely function as adaptors that mediate interactions between anterograde/retrograde motors and ciliary cargoes, facilitating cargo transport between the base and tip of the cilium. Here, we provide an up-to-date review of IFT complex structure and architecture, and discuss how interactions with cargoes and motors may be achieved. PMID:23945166

  7. Spatial Distribution of Intraflagellar Transport Proteins in Vertebrate Photoreceptors

    PubMed Central

    Luby-Phelps, Katharine; Fogerty, Joseph; Baker, Sheila A.; Pazour, Gregory J.; Besharse, Joseph C.

    2008-01-01

    Intraflagellar transport (IFT) of a ∼17S particle containing at least 16 distinct polypeptides is required for the assembly and maintenance of cilia and flagella. Although both genetic and biochemical evidence suggest a role for IFT in vertebrate photoreceptors, the spatial distribution of IFT proteins within photoreceptors remains poorly defined. We have evaluated the distribution of 4 IFT proteins using a combination of immunocytochemistry and rod-specific over-expression of GFP tagged IFT proteins. Endogenous IFT proteins are most highly concentrated within the inner segment, around the basal body, and within the outer segment IFT proteins are localized in discrete particles along the entire length of the axoneme. IFT52-GFP and IFT57-GFP mimicked this pattern in transgenic Xenopus. PMID:17931679

  8. Unexpected Roles for Ciliary Kinesins and Intraflagellar Transport Proteins.

    PubMed

    Pooranachandran, Niedharsan; Malicki, Jarema J

    2016-06-01

    Transport of proteins in the ciliary shaft is driven by microtubule-dependent motors, kinesins. Prior studies suggested that the heterotrimeric ciliary kinesin may be dispensable for certain aspects of transport in specialized cilia of vertebrate photoreceptor cells. To test this possibility further, we analyzed the mutant phenotype of the zebrafish kif3a gene, which encodes the common motor subunit of heterotrimeric ciliary kinesins. Cilia are absent in all organs examined, leading to the conclusion that kif3a is indispensable for ciliogenesis in all cells, including photoreceptors. Unexpectedly, kif3a function precedes ciliogenesis as ciliary basal bodies are mispositioned in mutant photoreceptors. This phenotype is much less pronounced in intraflagellar transport (IFT) mutants and reveals that kif3a has a much broader role than previously assumed. Despite the severity of their basal body phenotype, kif3a mutant photoreceptors survive longer compared to those in IFT mutants, which display much weaker basal body mispositioning. This effect is absent in kif3a;IFT double mutants, indicating that IFT proteins have ciliary transport-independent roles, which add to the severity of their photoreceptor phenotype. kif3a is dispensable for basal body docking in otic vesicle sensory epithelia and, surprisingly, short cilia form in mechanosensory cristae even in the absence of kif3a In contrast to Kif3a, the functions of the Kif3c-related protein, encoded by the kif3c-like (kif3cl) gene, and the homodimeric ciliary kinesin, kif17, are dispensable for photoreceptor morphogenesis. These studies demonstrate unexpected new roles for both ciliary heterotrimeric kinesins and IFT particle genes and clarify the function of kif17, the homodimeric ciliary kinesin gene. PMID:27038111

  9. Prostaglandin signaling regulates ciliogenesis by modulating intraflagellar transport

    PubMed Central

    Jin, Daqing; Ni, Terri T.; Sun, Jianjian; Wan, Haiyan; Amack, Jeffrey D.; Yu, Guangju; Fleming, Jonathan; Chiang, Chin; Li, Wenyan; Papierniak, Anna; Cheepala, Satish; Conseil, Gwenaëlle; Cole, Susan P.C.; Zhou, Bin; Drummond, Iain A.; Schuetz, John D.; Malicki, Jarema; Zhong, Tao P.

    2014-01-01

    Cilia are microtubule-based organelles that mediate signal transduction in a variety of tissues. Despite their importance, the signaling cascades that regulate cilia formation remain incompletely understood. Here we report that prostaglandin signaling affects ciliogenesis by regulating anterograde intraflagellar transport (IFT). Zebrafish leakytail (lkt) mutants display ciliogenesis defects, and lkt locus encodes an ATP-binding cassette transporter (ABCC4). We show that Lkt/ABCC4 localizes to the cell membrane and exports prostaglandin E2 (PGE2), a function that is abrogated by the Lkt/ABCC4T804M mutant. PGE2 synthesis enzyme Cyclooxygenase-1 and its receptor, EP4, which localizes to the cilium and activates cAMP-mediated signaling cascade, are required for cilia formation and elongation. Importantly, PGE2 signaling increases anterograde but not retrograde velocity of IFT and promotes ciliogenesis in mammalian cells. These findings lead us to propose that Lkt/ABCC4-mediated PGE2 signaling acts through a ciliary G-protein-coupled receptor, EP4, to upregulate cAMP synthesis and increase anterograde IFT, thereby promoting ciliogenesis. PMID:25173977

  10. Transition fibre protein FBF1 is required for the ciliary entry of assembled intraflagellar transport complexes.

    PubMed

    Wei, Qing; Xu, Qingwen; Zhang, Yuxia; Li, Yujie; Zhang, Qing; Hu, Zeng; Harris, Peter C; Torres, Vicente E; Ling, Kun; Hu, Jinghua

    2013-01-01

    Sensory organelle cilia have critical roles in mammalian embryonic development and tissue homeostasis. Intraflagellar transport (IFT) machinery is required for the assembly and maintenance of cilia. Yet, how this large complex passes through the size-dependent barrier at the ciliary base remains enigmatic. Here we report that FBF1, a highly conserved transition fibre protein, is required for the ciliary import of assembled IFT particles at the ciliary base. We cloned dyf-19, the Caenorhabditis elegans homologue of human FBF1, in a whole-genome screen for ciliogenesis mutants. DYF-19 localizes specifically to transition fibres and interacts directly with the IFT-B component DYF-11/IFT54. Although not a structural component of transition fibres, DYF-19 is required for the transit of assembled IFT particles through the ciliary base. Furthermore, we found that human FBF1 shares conserved localization and function with its worm counterpart. We conclude that FBF1 is a key functional transition fibre component that actively facilitates the ciliary entry of assembled IFT machinery. PMID:24231678

  11. Direct evidence for BBSome-associated intraflagellar transport reveals distinct properties of native mammalian cilia

    PubMed Central

    Williams, Corey L.; McIntyre, Jeremy C.; Norris, Stephen R.; Jenkins, Paul M.; Zhang, Lian; Pei, Qinglin; Verhey, Kristen; Martens, Jeffrey R.

    2014-01-01

    Cilia dysfunction underlies a class of human diseases with variable penetrance in different organ systems. Across eukaryotes, intraflagellar transport (IFT) facilitates cilia biogenesis and cargo trafficking, but our understanding of mammalian IFT is insufficient. Here we perform live analysis of cilia ultrastructure, composition and cargo transport in native mammalian tissue using olfactory sensory neurons. Proximal and distal axonemes of these neurons show no bias towards IFT kinesin-2 choice, and Kif17 homodimer is dispensable for distal segment IFT. We identify Bardet–Biedl syndrome proteins (BBSome) as bona fide constituents of IFT in olfactory sensory neurons, and show that they exist in 1:1 stoichiometry with IFT particles. Conversely, subpopulations of peripheral membrane proteins, as well as transmembrane olfactory signalling pathway components, are capable of IFT but with significantly less frequency and/or duration. Our results yield a model for IFT and cargo trafficking in native mammalian cilia and may explain the penetrance of specific ciliopathy phenotypes in olfactory neurons. PMID:25504142

  12. The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery.

    PubMed

    Toriyama, Michinori; Lee, Chanjae; Taylor, S Paige; Duran, Ivan; Cohn, Daniel H; Bruel, Ange-Line; Tabler, Jacqueline M; Drew, Kevin; Kelly, Marcus R; Kim, Sukyoung; Park, Tae Joo; Braun, Daniela A; Pierquin, Ghislaine; Biver, Armand; Wagner, Kerstin; Malfroot, Anne; Panigrahi, Inusha; Franco, Brunella; Al-Lami, Hadeel Adel; Yeung, Yvonne; Choi, Yeon Ja; Duffourd, Yannis; Faivre, Laurence; Rivière, Jean-Baptiste; Chen, Jiang; Liu, Karen J; Marcotte, Edward M; Hildebrandt, Friedhelm; Thauvin-Robinet, Christel; Krakow, Deborah; Jackson, Peter K; Wallingford, John B

    2016-06-01

    Cilia use microtubule-based intraflagellar transport (IFT) to organize intercellular signaling. Ciliopathies are a spectrum of human diseases resulting from defects in cilia structure or function. The mechanisms regulating the assembly of ciliary multiprotein complexes and the transport of these complexes to the base of cilia remain largely unknown. Combining proteomics, in vivo imaging and genetic analysis of proteins linked to planar cell polarity (Inturned, Fuzzy and Wdpcp), we identified and characterized a new genetic module, which we term CPLANE (ciliogenesis and planar polarity effector), and an extensive associated protein network. CPLANE proteins physically and functionally interact with the poorly understood ciliopathy-associated protein Jbts17 at basal bodies, where they act to recruit a specific subset of IFT-A proteins. In the absence of CPLANE, defective IFT-A particles enter the axoneme and IFT-B trafficking is severely perturbed. Accordingly, mutation of CPLANE genes elicits specific ciliopathy phenotypes in mouse models and is associated with ciliopathies in human patients. PMID:27158779

  13. An essential role for DYF-11/MIP-T3 in assembling functional intraflagellar transport complexes.

    PubMed

    Li, Chunmei; Inglis, Peter N; Leitch, Carmen C; Efimenko, Evgeni; Zaghloul, Norann A; Mok, Calvin A; Davis, Erica E; Bialas, Nathan J; Healey, Michael P; Héon, Elise; Zhen, Mei; Swoboda, Peter; Katsanis, Nicholas; Leroux, Michel R

    2008-03-01

    MIP-T3 is a human protein found previously to associate with microtubules and the kinesin-interacting neuronal protein DISC1 (Disrupted-in-Schizophrenia 1), but whose cellular function(s) remains unknown. Here we demonstrate that the C. elegans MIP-T3 ortholog DYF-11 is an intraflagellar transport (IFT) protein that plays a critical role in assembling functional kinesin motor-IFT particle complexes. We have cloned a loss of function dyf-11 mutant in which several key components of the IFT machinery, including Kinesin-II, as well as IFT subcomplex A and B proteins, fail to enter ciliary axonemes and/or mislocalize, resulting in compromised ciliary structures and sensory functions, and abnormal lipid accumulation. Analyses in different mutant backgrounds further suggest that DYF-11 functions as a novel component of IFT subcomplex B. Consistent with an evolutionarily conserved cilia-associated role, mammalian MIP-T3 localizes to basal bodies and cilia, and zebrafish mipt3 functions synergistically with the Bardet-Biedl syndrome protein Bbs4 to ensure proper gastrulation, a key cilium- and basal body-dependent developmental process. Our findings therefore implicate MIP-T3 in a previously unknown but critical role in cilium biogenesis and further highlight the emerging role of this organelle in vertebrate development. PMID:18369462

  14. WD60/FAP163 is a dynein intermediate chain required for retrograde intraflagellar transport in cilia.

    PubMed

    Patel-King, Ramila S; Gilberti, Renée M; Hom, Erik F Y; King, Stephen M

    2013-09-01

    Retrograde intraflagellar transport (IFT) is required for assembly of cilia. We identify a Chlamydomonas flagellar protein (flagellar-associated protein 163 [FAP163]) as being closely related to the D1bIC(FAP133) intermediate chain (IC) of the dynein that powers this movement. Biochemical analysis revealed that FAP163 is present in the flagellar matrix and is actively trafficked by IFT. Furthermore, FAP163 copurified with D1bIC(FAP133) and the LC8 dynein light chain, indicating that it is an integral component of the retrograde IFT dynein. To assess the functional role of FAP163, we generated an RNA interference knockdown of the orthologous protein (WD60) in planaria. The Smed-wd60(RNAi) animals had a severe ciliary assembly defect that dramatically compromised whole-organism motility. Most cilia were present as short stubs that had accumulated large quantities of IFT particle-like material between the doublet microtubules and the membrane. The few remaining approximately full-length cilia had a chaotic beat with a frequency reduced from 24 to ∼10 Hz. Thus WD60/FAP163 is a dynein IC that is absolutely required for retrograde IFT and ciliary assembly. PMID:23864713

  15. Intraflagellar transport is essential for mammalian spermiogenesis but is absent in mature sperm

    PubMed Central

    San Agustin, Jovenal T.; Pazour, Gregory J.; Witman, George B.

    2015-01-01

    Drosophila sperm are unusual in that they do not require the intraflagellar transport (IFT) system for assembly of their flagella. In the mouse, the IFT proteins are very abundant in testis, but we here show that mature sperm are completely devoid of them, making the importance of IFT to mammalian sperm development unclear. To address this question, we characterized spermiogenesis and fertility in the Ift88Tg737Rpw mouse. This mouse has a hypomorphic mutation in the gene encoding the IFT88 subunit of the IFT particle. This mutation is highly disruptive to ciliary assembly in other organs. Ift88−/− mice are completely sterile. They produce ∼350-fold fewer sperm than wild-type mice, and the remaining sperm completely lack or have very short flagella. The short flagella rarely have axonemes but assemble ectopic microtubules and outer dense fibers and accumulate improperly assembled fibrous sheath proteins. Thus IFT is essential for the formation but not the maintenance of mammalian sperm flagella. PMID:26424803

  16. Subunit Interactions and Organization of the Chlamydomonas reinhardtii Intraflagellar Transport Complex A Proteins*

    PubMed Central

    Behal, Robert H.; Miller, Mark S.; Qin, Hongmin; Lucker, Ben F.; Jones, Alexis; Cole, Douglas G.

    2012-01-01

    Chlamydomonas reinhardtii intraflagellar transport (IFT) particles can be biochemically resolved into two smaller assemblies, complexes A and B, that contain up to six and 15 protein subunits, respectively. We provide here the proteomic and immunological analyses that verify the identity of all six Chlamydomonas A proteins. Using sucrose density gradient centrifugation and antibody pulldowns, we show that all six A subunits are associated in a 16 S complex in both the cell bodies and flagella. A significant fraction of the cell body IFT43, however, exhibits a much slower sedimentation of ∼2 S and is not associated with the IFT A complex. To identify interactions between the six A proteins, we combined exhaustive yeast-based two-hybrid analysis, heterologous recombinant protein expression in Escherichia coli, and analysis of the newly identified complex A mutants, ift121 and ift122. We show that IFT121 and IFT43 interact directly and provide evidence for additional interactions between IFT121 and IFT139, IFT121 and IFT122, IFT140 and IFT122, and IFT140 and IFT144. The mutant analysis further allows us to propose that a subset of complex A proteins, IFT144/140/122, can form a stable 12 S subcomplex that we refer to as the IFT A core. Based on these results, we propose a model for the spatial arrangement of the six IFT A components. PMID:22170070

  17. TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport.

    PubMed

    Schmidts, Miriam; Hou, Yuqing; Cortés, Claudio R; Mans, Dorus A; Huber, Celine; Boldt, Karsten; Patel, Mitali; van Reeuwijk, Jeroen; Plaza, Jean-Marc; van Beersum, Sylvia E C; Yap, Zhi Min; Letteboer, Stef J F; Taylor, S Paige; Herridge, Warren; Johnson, Colin A; Scambler, Peter J; Ueffing, Marius; Kayserili, Hulya; Krakow, Deborah; King, Stephen M; Beales, Philip L; Al-Gazali, Lihadh; Wicking, Carol; Cormier-Daire, Valerie; Roepman, Ronald; Mitchison, Hannah M; Witman, George B

    2015-01-01

    The analysis of individuals with ciliary chondrodysplasias can shed light on sensitive mechanisms controlling ciliogenesis and cell signalling that are essential to embryonic development and survival. Here we identify TCTEX1D2 mutations causing Jeune asphyxiating thoracic dystrophy with partially penetrant inheritance. Loss of TCTEX1D2 impairs retrograde intraflagellar transport (IFT) in humans and the protist Chlamydomonas, accompanied by destabilization of the retrograde IFT dynein motor. We thus define TCTEX1D2 as an integral component of the evolutionarily conserved retrograde IFT machinery. In complex with several IFT dynein light chains, it is required for correct vertebrate skeletal formation but may be functionally redundant under certain conditions. PMID:26044572

  18. TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport

    PubMed Central

    Schmidts, Miriam; Hou, Yuqing; Cortés, Claudio R.; Mans, Dorus A.; Huber, Celine; Boldt, Karsten; Patel, Mitali; van Reeuwijk, Jeroen; Plaza, Jean-Marc; van Beersum, Sylvia E. C.; Yap, Zhi Min; Letteboer, Stef J. F.; Taylor, S. Paige; Herridge, Warren; Johnson, Colin A.; Scambler, Peter J.; Ueffing, Marius; Kayserili, Hulya; Krakow, Deborah; King, Stephen M.; Beales, Philip L.; Al-Gazali, Lihadh; Wicking, Carol; Cormier-Daire, Valerie; Roepman, Ronald; Mitchison, Hannah M.; Witman, George B.; Al-Turki, Saeed; Anderson, Carl; Anney, Richard; Antony, Dinu; Asimit, Jennifer; Ayub, Mohammad; Barrett, Jeff; Barroso, Inês; Bentham, Jamie; Bhattacharya, Shoumo; Blackwood, Douglas; Bobrow, Martin; Bochukova, Elena; Bolton, Patrick; Boustred, Chris; Breen, Gerome; Brion, Marie-Jo; Brown, Andrew; Calissano, Mattia; Carss, Keren; Chatterjee, Krishna; Chen, Lu; Cirak, Sebhattin; Clapham, Peter; Clement, Gail; Coates, Guy; Collier, David; Cosgrove, Catherine; Cox, Tony; Craddock, Nick; Crooks, Lucy; Curran, Sarah; Daly, Allan; Danecek, Petr; Smith, George Davey; Day-Williams, Aaron; Day, Ian; Durbin, Richard; Edkins, Sarah; Ellis, Peter; Evans, David; Farooqi, I. Sadaf; Fatemifar, Ghazaleh; Fitzpatrick, David; Flicek, Paul; Floyd, Jamie; Foley, A. Reghan; Franklin, Chris; Futema, Marta; Gallagher, Louise; Gaunt, Tom; Geschwind, Daniel; Greenwood, Celia; Grozeva, Detelina; Guo, Xiaosen; Gurling, Hugh; Hart, Deborah; Hendricks, Audrey; Holmans, Peter; Huang, Jie; Humphries, Steve E.; Hurles, Matt; Hysi, Pirro; Jackson, David; Jamshidi, Yalda; Jewell, David; Chris, Joyce; Kaye, Jane; Keane, Thomas; Kemp, John; Kennedy, Karen; Kent, Alastair; Kolb-Kokocinski, Anja; Lachance, Genevieve; Langford, Cordelia; Lee, Irene; Li, Rui; Li, Yingrui; Ryan, Liu; Lönnqvist, Jouko; Lopes, Margarida; MacArthur, Daniel G.; Massimo, Mangino; Marchini, Jonathan; Maslen, John; McCarthy, Shane; McGuffin, Peter; McIntosh, Andrew; McKechanie, Andrew; McQuillin, Andrew; Memari, Yasin; Metrustry, Sarah; Min, Josine; Moayyeri, Alireza; Morris, James; Muddyman, Dawn; Muntoni, Francesco; Northstone, Kate; O'Donovan, Michael; O'Rahilly, Stephen; Onoufriadis, Alexandros; Oualkacha, Karim; Owen, Michael; Palotie, Aarno; Panoutsopoulou, Kalliope; Parker, Victoria; Parr, Jeremy; Paternoster, Lavinia; Paunio, Tiina; Payne, Felicity; Perry, John; Pietilainen, Olli; Plagnol, Vincent; Quail, Michael A.; Quaye, Lydia; Raymond, Lucy; Rehnström, Karola; Brent Richards, J.; Ring, Sue; Ritchie, Graham R S; Savage, David B.; Schoenmakers, Nadia; Semple, Robert K.; Serra, Eva; Shihab, Hashem; Shin, So-Youn; Skuse, David; Small, Kerrin; Smee, Carol; Soler, Artigas María; Soranzo, Nicole; Southam, Lorraine; Spector, Tim; St Pourcain, Beate; St. Clair, David; Stalker, Jim; Surdulescu, Gabriela; Suvisaari, Jaana; Tachmazidou, Ioanna; Tian, Jing; Timpson, Nic; Tobin, Martin; Valdes, Ana; van Kogelenberg, Margriet; Vijayarangakannan, Parthiban; Wain, Louise; Walter, Klaudia; Wang, Jun; Ward, Kirsten; Wheeler, Ellie; Whittall, Ros; Williams, Hywel; Williamson, Kathy; Wilson, Scott G.; Wong, Kim; Whyte, Tamieka; ChangJiang, Xu; Zeggini, Eleftheria; Zhang, Feng; Zheng, Hou-Feng

    2015-01-01

    The analysis of individuals with ciliary chondrodysplasias can shed light on sensitive mechanisms controlling ciliogenesis and cell signalling that are essential to embryonic development and survival. Here we identify TCTEX1D2 mutations causing Jeune asphyxiating thoracic dystrophy with partially penetrant inheritance. Loss of TCTEX1D2 impairs retrograde intraflagellar transport (IFT) in humans and the protist Chlamydomonas, accompanied by destabilization of the retrograde IFT dynein motor. We thus define TCTEX1D2 as an integral component of the evolutionarily conserved retrograde IFT machinery. In complex with several IFT dynein light chains, it is required for correct vertebrate skeletal formation but may be functionally redundant under certain conditions. PMID:26044572

  19. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella

    PubMed Central

    Ishikawa, Hiroaki; Ide, Takahiro; Yagi, Toshiki; Jiang, Xue; Hirono, Masafumi; Sasaki, Hiroyuki; Yanagisawa, Haruaki; Wemmer, Kimberly A; Stainier, Didier YR; Qin, Hongmin; Kamiya, Ritsu; Marshall, Wallace F

    2014-01-01

    Cilia/flagella are assembled and maintained by the process of intraflagellar transport (IFT), a highly conserved mechanism involving more than 20 IFT proteins. However, the functions of individual IFT proteins are mostly unclear. To help address this issue, we focused on a putative IFT protein TTC26/DYF13. Using live imaging and biochemical approaches we show that TTC26/DYF13 is an IFT complex B protein in mammalian cells and Chlamydomonas reinhardtii. Knockdown of TTC26/DYF13 in zebrafish embryos or mutation of TTC26/DYF13 in C. reinhardtii, produced short cilia with abnormal motility. Surprisingly, IFT particle assembly and speed were normal in dyf13 mutant flagella, unlike in other IFT complex B mutants. Proteomic and biochemical analyses indicated a particular set of proteins involved in motility was specifically depleted in the dyf13 mutant. These results support the concept that different IFT proteins are responsible for different cargo subsets, providing a possible explanation for the complexity of the IFT machinery. DOI: http://dx.doi.org/10.7554/eLife.01566.001 PMID:24596149

  20. Intraflagellar Transport/Hedgehog-Related Signaling Components Couple Sensory Cilium Morphology and Serotonin Biosynthesis in Caenorhabditis elegans

    PubMed Central

    Moussaif, Mustapha; Sze, Ji Ying

    2009-01-01

    Intraflagellar transport in cilia has been proposed as a crucial mediator of Hedgehog signal transduction during embryonic pattern formation in both vertebrates and invertebrates. Here, we show that the Hh receptor Patched-related factor DAF-6 and intraflagellar transport modulate serotonin production in Caenorhabditis elegans animals, by remodeling the architecture of dendritic cilia of a pair of ADF serotonergic chemosensory neurons. Wild-type animals under aversive environment drastically reduce DAF-6 expression in glia-like cells surrounding the cilia of chemosensory neurons, resulting in cilium structural remodeling and upregulation of the serotonin-biosynthesis enzyme tryptophan hydroxylase tph-1 in the ADF neurons. These cellular and molecular modifications are reversed when the environment improves. Mutants of daf-6 or intraflagellar transport constitutively upregulate tph-1 expression. Epistasis analyses indicate that DAF-6/intraflagellar transport and the OCR-2/OSM-9 TRPV channel act in concert, regulating two layers of activation of tph-1 in the ADF neurons. The TRPV signaling turns on tph-1 expression under favorable and aversive conditions, whereas inactivation of DAF-6 by stress results in further upregulation of tph-1 independently of OCR-2/OSM-9 activity. Behavioral analyses suggest that serotonin facilitates larval animals resuming development when the environment improves. Our study revealed the cilium structure of serotonergic neurons as a trigger of regulated serotonin production, and demonstrated that a Hedgehog-related signaling component is dynamically regulated by environment and underscores neuroplasticity of serotonergic neurons in C. elegans under stress and stress recovery. PMID:19339602

  1. Microtubule doublets are double-track railways for intraflagellar transport trains.

    PubMed

    Stepanek, Ludek; Pigino, Gaia

    2016-05-01

    The cilium is a large macromolecular machine that is vital for motility, signaling, and sensing in most eukaryotic cells. Its conserved core structure, the axoneme, contains nine microtubule doublets, each comprising a full A-microtubule and an incomplete B-microtubule. However, thus far, the function of this doublet geometry has not been understood. We developed a time-resolved correlative fluorescence and three-dimensional electron microscopy approach to investigate the dynamics of intraflagellar transport (IFT) trains, which carry ciliary building blocks along microtubules during the assembly and disassembly of the cilium. Using this method, we showed that each microtubule doublet is used as a bidirectional double-track railway: Anterograde IFT trains move along B-microtubules, and retrograde trains move along A-microtubules. Thus, the microtubule doublet geometry provides direction-specific rails to coordinate bidirectional transport of ciliary components. PMID:27151870

  2. Retrograde Intraflagellar Transport Mutants Identify Complex A Proteins With Multiple Genetic Interactions in Chlamydomonas reinhardtii

    PubMed Central

    Iomini, Carlo; Li, Linya; Esparza, Jessica M.; Dutcher, Susan K.

    2009-01-01

    The intraflagellar transport machinery is required for the assembly of cilia. It has been investigated by biochemical, genetic, and computational methods that have identified at least 21 proteins that assemble into two subcomplexes. It has been hypothesized that complex A is required for retrograde transport. Temperature-sensitive mutations in FLA15 and FLA17 show defects in retrograde intraflagellar transport (IFT) in Chlamydomonas. We show that IFT144 and IFT139, two complex A proteins, are encoded by FLA15 and FLA17, respectively. The fla15 allele is a missense mutation in a conserved cysteine and the fla17 allele is an in-frame deletion of three exons. The flagellar assembly defect of each mutant is rescued by the respective transgenes. In fla15 and fla17 mutants, bulges form in the distal one-third of the flagella at the permissive temperature and this phenotype is also rescued by the transgenes. These bulges contain the complex B component IFT74/72, but not α-tubulin or p28, a component of an inner dynein arm, which suggests specificity with respect to the proteins that accumulate in these bulges. IFT144 and IFT139 are likely to interact with each other and other proteins on the basis of three distinct genetic tests: (1) Double mutants display synthetic flagellar assembly defects at the permissive temperature, (2) heterozygous diploid strains exhibit second-site noncomplemention, and (3) transgenes confer two-copy suppression. Since these tests show different levels of phenotypic sensitivity, we propose they illustrate different gradations of gene interaction between complex A proteins themselves and with a complex B protein (IFT172). PMID:19720863

  3. Function and regulation of primary cilia and intraflagellar transport proteins in the skeleton

    PubMed Central

    Yuan, Xue; Serra, Rosa A.; Yang, Shuying

    2014-01-01

    Primary cilia are microtubule-based organelles that project from the cell surface to enable transduction of various developmental signaling pathways. The process of intraflagellar transport (IFT) is crucial for the building and maintenance of primary cilia. Ciliary dysfunction has been found in a range of disorders called ciliopathies, some of which display severe skeletal dysplasias. In recent years, interest has grown in uncovering the function of primary cilia/IFT proteins in bone development, mechanotransduction, and cellular regulation. We summarize recent advances in understanding the function of cilia and IFT proteins in the regulation of cell differentiation in osteoblasts, osteocytes, chondrocytes, and mesenchymal stem cells (MSCs). We also discuss the mechanosensory function of cilia and IFT proteins in bone cells, cilia orientation, and other functions of cilia in chondrocytes. PMID:24961486

  4. The GTPase IFT27 is involved in both anterograde and retrograde intraflagellar transport

    PubMed Central

    Huet, Diego; Blisnick, Thierry; Perrot, Sylvie; Bastin, Philippe

    2014-01-01

    The construction of cilia and flagella depends on intraflagellar transport (IFT), the bidirectional movement of two protein complexes (IFT-A and IFT-B) driven by specific kinesin and dynein motors. IFT-B and kinesin are associated to anterograde transport whereas IFT-A and dynein participate to retrograde transport. Surprisingly, the small GTPase IFT27, a member of the IFT-B complex, turns out to be essential for retrograde cargo transport in Trypanosoma brucei. We reveal that this is due to failure to import both the IFT-A complex and the IFT dynein into the flagellar compartment. To get further molecular insight about the role of IFT27, GDP- or GTP-locked versions were expressed in presence or absence of endogenous IFT27. The GDP-locked version is unable to enter the flagellum and to interact with other IFT-B proteins and its sole expression prevents flagellum formation. These findings demonstrate that a GTPase-competent IFT27 is required for association to the IFT complex and that IFT27 plays a role in the cargo loading of the retrograde transport machinery. DOI: http://dx.doi.org/10.7554/eLife.02419.001 PMID:24843028

  5. Two classes of short intraflagellar transport train with different 3D structures are present in Chlamydomonas flagella.

    PubMed

    Vannuccini, Elisa; Paccagnini, Eugenio; Cantele, Francesca; Gentile, Mariangela; Dini, Daniele; Fino, Federica; Diener, Dennis; Mencarelli, Caterina; Lupetti, Pietro

    2016-05-15

    Intraflagellar transport (IFT) is responsible for the bidirectional trafficking of molecular components required for the elongation and maintenance of eukaryotic cilia and flagella. Cargo is transported by IFT 'trains', linear rows of multiprotein particles moved by molecular motors along the axonemal doublets. We have previously described two structurally distinct categories of 'long' and 'short' trains. Here, we analyse the relative number of these trains throughout flagellar regeneration and show that long trains are most abundant at the beginning of flagellar growth whereas short trains gradually increase in number as flagella elongate. These observations are incompatible with the previous hypothesis that short trains are derived solely from the reorganization of long trains at the flagellar tip. We demonstrate with electron tomography the existence of two distinct ultrastructural organizations for the short trains, we name these 'narrow' and 'wide', and provide the first 3D model of the narrow short trains. These trains are characterized by tri-lobed units, which repeat longitudinally every 16 nm and contact protofilament 7 of the B-tubule. Functional implications of the new structural evidence are discussed. PMID:27044756

  6. The molecular identities of the Caenorhabditis elegans intraflagellar transport genes dyf-6, daf-10 and osm-1.

    PubMed

    Bell, Leslie R; Stone, Steven; Yochem, John; Shaw, Jocelyn E; Herman, Robert K

    2006-07-01

    The Caenorhabditis elegans genes dyf-6, daf-10, and osm-1 are among the set of genes that affect chemotaxis and the ability of certain sensory neurons to take up fluorescent dyes from the environment. Some genes in this category are known to be required for intraflagellar transport (IFT), which is the bidirectional movement of raft-like particles along the axonemes of cilia and flagella. The cloning of dyf-6, daf-10, and osm-1 are described here. The daf-10 and osm-1 gene products resemble each other and contain WD and WAA repeats. DYF-6, the product of a complex locus, lacks known motifs, but orthologs are present in flies and mammals. Phenotypic analysis of dyf-6 mutants expressing an OSM-6::GFP reporter indicates that the cilia of the amphid and phasmid dendritic endings are foreshortened. Consistent with genetic mosaic analysis, which indicates that dyf-6 functions in neurons of the amphid sensilla, DYF-6::GFP is expressed in amphid and phasmid neurons. Movement of DYF-6::GFP within the ciliated endings of the neurons indicates that DYF-6 is involved in IFT. In addition, IFT can be observed in dauer larvae. PMID:16648645

  7. Intraflagellar transport is required for the maintenance of the trypanosome flagellum composition but not its length.

    PubMed

    Fort, Cécile; Bonnefoy, Serge; Kohl, Linda; Bastin, Philippe

    2016-08-01

    Intraflagellar transport (IFT) is required for construction of most cilia and flagella. Here, we used electron microscopy, immunofluorescence and live video microscopy to show that IFT is absent or arrested in the mature flagellum of Trypanosoma brucei upon RNA interference (RNAi)-mediated knockdown of IFT88 and IFT140, respectively. Flagella assembled prior to RNAi did not shorten, showing that IFT is not essential for the maintenance of flagella length. Although the ultrastructure of the axoneme was not visibly affected, flagellar beating was strongly reduced and the distribution of several flagellar components was drastically modified. The R subunit of the protein kinase A was no longer concentrated in the flagellum but was largely found in the cell body whereas the kinesin 9B motor was accumulating at the distal tip of the flagellum. In contrast, the distal tip protein FLAM8 was dispersed along the flagellum. This reveals that IFT also functions in maintaining the distribution of some flagellar proteins after construction of the organelle is completed. PMID:27343245

  8. The intraflagellar transport protein IFT80 is required for cilia formation and osteogenesis

    PubMed Central

    Yang, Shuying; Wang, Changdong

    2012-01-01

    Intraflagellar transport (IFT) proteins are essential for the assembly and maintenance of cilia, which play important roles in development and homeostasis. IFT80 is a newly defined IFT protein. Partial mutation of IFT80 in humans causes diseases such as Jeune asphyxiating thoracic dystrophy (JATD) and short rib polydactyly (SRP) type III with abnormal skeletal development. However, the role and mechanism of IFT80 in osteogenesis is unknown. Here, we first detected IFT80 expression pattern and found that IFT80 was highly expressed in mouse long bone, skull, and during osteoblast differentiation. By using lentivirus-mediated RNA interference (RNAi) technology to silence IFT80 in murine mesenchymal progenitor cell line-C3H10T1/2 and bone marrow derived stromal cells, we found that silencing IFT80 led to either shortening or loss of cilia and the decrease of Arl13b expression - a small GTPase that is localized in cilia. Additionally, silencing IFT80 blocked the expression of osteoblast markers and significantly inhibited ALP activity and cell mineralization. We further found that IFT80 silencing inhibited the expression of Gli2, a critical transcriptional factor in the hedgehog signaling pathway. Overexpression of Gli2 rescued the deficiency of osteoblast differentiation from IFT80-silenced cells, and dramatically promoted osteoblast differentiation. Moreover, introduction of Smo agonist (SAG) promotes osteoblast differentiation, which was partially inhibited by IFT80 silencing. Thus, these results suggested that IFT80 plays an important role in osteogenesis through regulating Hedgehog/Gli signal pathways. PMID:22771375

  9. Functional genomics of intraflagellar transport-associated proteins in C. elegans.

    PubMed

    Inglis, Peter N; Blacque, Oliver E; Leroux, Michel R

    2009-01-01

    The nematode Caenorhabditis elegans presents numerous advantages for the identification and molecular analysis of intraflagellar transport (IFT)-associated proteins, which play a critical role in the formation of cilia. Many proteins were first described as participating in IFT in this organism, including IFTA-1 (IFT121), DYF-1 (fleer/IFT70), DYF-2 (IFT144), DYF-3 (Qilin), DYF-11 (MIP-T3/IFT54), DYF-13, XBX-1 (dynein light intermediate chain), XBX-2 (dynein light chain), CHE-13 (IFT57/HIPPI), orthologs of Bardet-Biedl syndrome proteins, and potential regulatory protein, IFTA-2 (RABL5/IFT22). Transgenic animals bearing green fluorescent protein (GFP)-tagged proteins can be generated with ease, and in vivo imaging of IFT in both wild-type and cilia mutant strains can be performed quickly. The analyses permit detailed information on the localization and dynamic properties (velocities along the ciliary axoneme) of the relevant proteins, providing insights into their potential functions in processes such as anterograde and retrograde transport and cilium formation, as well as association with distinct modules of the IFT machinery (e.g., IFT subcomplexes A or B). Behavioral studies of the corresponding IFT-associated gene mutants further enable an understanding of the ciliary role of the proteins-e.g., in chemosensation, lipid homeostasis, lifespan control, and signaling-in a multicellular animal. In this chapter, we discuss how C. elegans can be used for the identification and characterization of IFT-associated proteins, focusing on methods for the generation of GFP-tagged IFT reporter strains, time-lapse microscopy, and IFT rate measurements. PMID:20409822

  10. Why motor proteins team up - Intraflagellar transport in C. elegans cilia

    PubMed Central

    Mijalkovic, Jona; Prevo, Bram; Peterman, Erwin J. G.

    2016-01-01

    ABSTRACT Inside the cell, vital processes such as cell division and intracellular transport are driven by the concerted action of different molecular motor proteins. In C. elegans chemosensory cilia, 2 kinesin-2 family motor proteins, kinesin-II and OSM-3, team up to drive intraflagellar transport (IFT) in the anterograde direction, from base to tip, whereas IFT dynein hitchhikes toward the tip and subsequently drives IFT in the opposite, retrograde direction, thereby recycling both kinesins. While it is evident that at least a retrograde and an anterograde motor are necessary to drive IFT, it has remained puzzling why 2 same-polarity kinesins are employed. Recently, we addressed this question by combining advanced genome-engineering tools with ultrasensitive, quantitative fluorescence microscopy to study IFT with single-molecule sensitivity.1,2 Using this combination of approaches, we uncovered a differentiation in kinesin-2 function, in which the slower kinesin-II operates as an ‘importer’, loading IFT trains into the cilium before gradually handing them over to the faster OSM-3. OSM-3 subsequently acts as a long-range ‘transporter’, driving the IFT trains toward the tip. The two kinesin-2 motors combine their unique motility properties to achieve something neither motor can achieve on its own; that is to optimize the amount of cargo inside the cilium. In this commentary, we provide detailed insight into the rationale behind our research approach and comment on our recent findings. Moreover, we discuss the role of IFT dynein and provide an outlook on future studies. PMID:27384150

  11. Intraflagellar transport 27 is essential for hedgehog signaling but dispensable for ciliogenesis during hair follicle morphogenesis.

    PubMed

    Yang, Ning; Li, Li; Eguether, Thibaut; Sundberg, John P; Pazour, Gregory J; Chen, Jiang

    2015-06-15

    Hair follicle morphogenesis requires precisely controlled reciprocal communications, including hedgehog (Hh) signaling. Activation of the Hh signaling pathway relies on the primary cilium. Disrupting ciliogenesis results in hair follicle morphogenesis defects due to attenuated Hh signaling; however, the loss of cilia makes it impossible to determine whether hair follicle phenotypes in these cilia mutants are caused by the loss of cilia, disruption of Hh signaling, or a combination of these events. In this study, we characterized the function of Ift27, which encodes a subunit of intraflagellar transport (IFT) complex B. Hair follicle morphogenesis of Ift27-null mice was severely impaired, reminiscent of phenotypes observed in cilia and Hh mutants. Furthermore, the Hh signaling pathway was attenuated in Ift27 mutants, which was in association with abnormal ciliary trafficking of SMO and GLI2, and impaired processing of Gli transcription factors; however, formation of the ciliary axoneme was unaffected. The ciliary localization of IFT25 (HSPB11), the binding partner of IFT27, was disrupted in Ift27 mutant cells, and Ift25-null mice displayed hair follicle phenotypes similar to those of Ift27 mutants. These data suggest that Ift27 and Ift25 operate in a genetically and functionally dependent manner during hair follicle morphogenesis. This study suggests that the molecular trafficking machineries underlying ciliogenesis and Hh signaling can be segregated, thereby providing important insights into new avenues of inhibiting Hh signaling, which might be adopted in the development of targeted therapies for Hh-dependent cancers, such as basal cell carcinoma. PMID:26023097

  12. Intraflagellar transport 27 is essential for hedgehog signaling but dispensable for ciliogenesis during hair follicle morphogenesis

    PubMed Central

    Yang, Ning; Li, Li; Eguether, Thibaut; Sundberg, John P.; Pazour, Gregory J.; Chen, Jiang

    2015-01-01

    Hair follicle morphogenesis requires precisely controlled reciprocal communications, including hedgehog (Hh) signaling. Activation of the Hh signaling pathway relies on the primary cilium. Disrupting ciliogenesis results in hair follicle morphogenesis defects due to attenuated Hh signaling; however, the loss of cilia makes it impossible to determine whether hair follicle phenotypes in these cilia mutants are caused by the loss of cilia, disruption of Hh signaling, or a combination of these events. In this study, we characterized the function of Ift27, which encodes a subunit of intraflagellar transport (IFT) complex B. Hair follicle morphogenesis of Ift27-null mice was severely impaired, reminiscent of phenotypes observed in cilia and Hh mutants. Furthermore, the Hh signaling pathway was attenuated in Ift27 mutants, which was in association with abnormal ciliary trafficking of SMO and GLI2, and impaired processing of Gli transcription factors; however, formation of the ciliary axoneme was unaffected. The ciliary localization of IFT25 (HSPB11), the binding partner of IFT27, was disrupted in Ift27 mutant cells, and Ift25-null mice displayed hair follicle phenotypes similar to those of Ift27 mutants. These data suggest that Ift27 and Ift25 operate in a genetically and functionally dependent manner during hair follicle morphogenesis. This study suggests that the molecular trafficking machineries underlying ciliogenesis and Hh signaling can be segregated, thereby providing important insights into new avenues of inhibiting Hh signaling, which might be adopted in the development of targeted therapies for Hh-dependent cancers, such as basal cell carcinoma. PMID:26023097

  13. Dysfunction of intraflagellar transport-A causes hyperphagia-induced obesity and metabolic syndrome

    PubMed Central

    Jacobs, Damon T.; Silva, Luciane M.; Allard, Bailey A.; Schonfeld, Michael P.; Chatterjee, Anindita; Talbott, George C.

    2016-01-01

    ABSTRACT Primary cilia extend from the plasma membrane of most vertebrate cells and mediate signaling pathways. Ciliary dysfunction underlies ciliopathies, which are genetic syndromes that manifest multiple clinical features, including renal cystic disease and obesity. THM1 (also termed TTC21B or IFT139) encodes a component of the intraflagellar transport-A complex and mutations in THM1 have been identified in 5% of individuals with ciliopathies. Consistent with this, deletion of murine Thm1 during late embryonic development results in cystic kidney disease. Here, we report that deletion of murine Thm1 during adulthood results in obesity, diabetes, hypertension and fatty liver disease, with gender differences in susceptibility to weight gain and metabolic dysfunction. Pair-feeding of Thm1 conditional knock-out mice relative to control littermates prevented the obesity and related disorders, indicating that hyperphagia caused the obese phenotype. Thm1 ablation resulted in increased localization of adenylyl cyclase III in primary cilia that were shortened, with bulbous distal tips on neurons of the hypothalamic arcuate nucleus, an integrative center for signals that regulate feeding and activity. In pre-obese Thm1 conditional knock-out mice, expression of anorexogenic pro-opiomelanocortin (Pomc) was decreased by 50% in the arcuate nucleus, which likely caused the hyperphagia. Fasting of Thm1 conditional knock-out mice did not alter Pomc nor orexogenic agouti-related neuropeptide (Agrp) expression, suggesting impaired sensing of changes in peripheral signals. Together, these data indicate that the Thm1-mutant ciliary defect diminishes sensitivity to feeding signals, which alters appetite regulation and leads to hyperphagia, obesity and metabolic disease. PMID:27482817

  14. The FLA3 KAP Subunit Is Required for Localization of Kinesin-2 to the Site of Flagellar Assembly and Processive Anterograde Intraflagellar TransportV⃞

    PubMed Central

    Mueller, Joshua; Perrone, Catherine A.; Bower, Raqual; Cole, Douglas G.; Porter, Mary E.

    2005-01-01

    Intraflagellar transport (IFT) is a bidirectional process required for assembly and maintenance of cilia and flagella. Kinesin-2 is the anterograde IFT motor, and Dhc1b/Dhc2 drives retrograde IFT. To understand how either motor interacts with the IFT particle or how their activities might be coordinated, we characterized a ts mutation in the Chlamydomonas gene encoding KAP, the nonmotor subunit of Kinesin-2. The fla3-1 mutation is an amino acid substitution in a conserved C-terminal domain. fla3-1 strains assemble flagella at 21°C, but cannot maintain them at 33°C. Although the Kinesin-2 complex is present at both 21 and 33°C, the fla3-1 Kinesin-2 complex is not efficiently targeted to or retained in the basal body region or flagella. Video-enhanced DIC microscopy of fla3-1 cells shows that the frequency of anterograde IFT particles is significantly reduced. Anterograde particles move at near wild-type velocities, but appear larger and pause more frequently in fla3-1. Transformation with an epitope-tagged KAP gene rescues all of the fla3-1 defects and results in preferential incorporation of tagged KAP complexes into flagella. KAP is therefore required for the localization of Kinesin-2 at the site of flagellar assembly and the efficient transport of anterograde IFT particles within flagella. PMID:15616187

  15. The intraflagellar transport dynein complex of trypanosomes is made of a heterodimer of dynein heavy chains and of light and intermediate chains of distinct functions

    PubMed Central

    Blisnick, Thierry; Buisson, Johanna; Absalon, Sabrina; Marie, Alexandra; Cayet, Nadège; Bastin, Philippe

    2014-01-01

    Cilia and flagella are assembled by intraflagellar transport (IFT) of protein complexes that bring tubulin and other precursors to the incorporation site at their distal tip. Anterograde transport is driven by kinesin, whereas retrograde transport is ensured by a specific dynein. In the protist Trypanosoma brucei, two distinct genes encode fairly different dynein heavy chains (DHCs; ∼40% identity) termed DHC2.1 and DHC2.2, which form a heterodimer and are both essential for retrograde IFT. The stability of each heavy chain relies on the presence of a dynein light intermediate chain (DLI1; also known as XBX-1/D1bLIC). The presence of both heavy chains and of DLI1 at the base of the flagellum depends on the intermediate dynein chain DIC5 (FAP133/WDR34). In the IFT140RNAi mutant, an IFT-A protein essential for retrograde transport, the IFT dynein components are found at high concentration at the flagellar base but fail to penetrate the flagellar compartment. We propose a model by which the IFT dynein particle is assembled in the cytoplasm, reaches the base of the flagellum, and associates with the IFT machinery in a manner dependent on the IFT-A complex. PMID:24989795

  16. The intraflagellar transport dynein complex of trypanosomes is made of a heterodimer of dynein heavy chains and of light and intermediate chains of distinct functions.

    PubMed

    Blisnick, Thierry; Buisson, Johanna; Absalon, Sabrina; Marie, Alexandra; Cayet, Nadège; Bastin, Philippe

    2014-09-01

    Cilia and flagella are assembled by intraflagellar transport (IFT) of protein complexes that bring tubulin and other precursors to the incorporation site at their distal tip. Anterograde transport is driven by kinesin, whereas retrograde transport is ensured by a specific dynein. In the protist Trypanosoma brucei, two distinct genes encode fairly different dynein heavy chains (DHCs; ∼40% identity) termed DHC2.1 and DHC2.2, which form a heterodimer and are both essential for retrograde IFT. The stability of each heavy chain relies on the presence of a dynein light intermediate chain (DLI1; also known as XBX-1/D1bLIC). The presence of both heavy chains and of DLI1 at the base of the flagellum depends on the intermediate dynein chain DIC5 (FAP133/WDR34). In the IFT140(RNAi) mutant, an IFT-A protein essential for retrograde transport, the IFT dynein components are found at high concentration at the flagellar base but fail to penetrate the flagellar compartment. We propose a model by which the IFT dynein particle is assembled in the cytoplasm, reaches the base of the flagellum, and associates with the IFT machinery in a manner dependent on the IFT-A complex. PMID:24989795

  17. Caenorhabditis elegans DYF-2, an orthologue of human WDR19, is a component of the intraflagellar transport machinery in sensory cilia.

    PubMed

    Efimenko, Evgeni; Blacque, Oliver E; Ou, Guangshuo; Haycraft, Courtney J; Yoder, Bradley K; Scholey, Jonathan M; Leroux, Michel R; Swoboda, Peter

    2006-11-01

    The intraflagellar transport (IFT) machinery required to build functional cilia consists of a multisubunit complex whose molecular composition, organization, and function are poorly understood. Here, we describe a novel tryptophan-aspartic acid (WD) repeat (WDR) containing IFT protein from Caenorhabditis elegans, DYF-2, that plays a critical role in maintaining the structural and functional integrity of the IFT machinery. We determined the identity of the dyf-2 gene by transgenic rescue of mutant phenotypes and by sequencing of mutant alleles. Loss of DYF-2 function selectively affects the assembly and motility of different IFT components and leads to defects in cilia structure and chemosensation in the nematode. Based on these observations, and the analysis of DYF-2 movement in a Bardet-Biedl syndrome mutant with partially disrupted IFT particles, we conclude that DYF-2 can associate with IFT particle complex B. At the same time, mutations in dyf-2 can interfere with the function of complex A components, suggesting an important role of this protein in the assembly of the IFT particle as a whole. Importantly, the mouse orthologue of DYF-2, WDR19, also localizes to cilia, pointing to an important evolutionarily conserved role for this WDR protein in cilia development and function. PMID:16957054

  18. The Intraflagellar Transport Protein IFT27 Promotes BBSome Exit from Cilia through the GTPase ARL6/BBS3

    PubMed Central

    Liew, Gerald M.; Ye, Fan; Nager, Andrew R.; Murphy, J. Patrick; Lee, Jaclyn S.; Aguiar, Mike; Breslow, David K.; Gygi, Steven P.; Nachury, Maxence V.

    2014-01-01

    SUMMARY The sorting of signaling receptors into and out of cilia relies on the BBSome, a complex of Bardet-Biedl syndrome (BBS) proteins, and on the intraflagellar transport (IFT) machinery. GTP loading onto the Arf-like GTPase ARL6/BBS3 drives assembly of a membrane-apposed BBSome coat that promotes cargo entry into cilia, yet how and where ARL6 is activated remains elusive. Here, we show that the Rab-like GTPase IFT27/RABL4, a known component of IFT complex B, promotes the exit of BBSome and associated cargoes from cilia. Unbiased proteomics and biochemical reconstitution assays show that, upon disengagement from the rest of IFT-B, IFT27 directly interacts with the nucleotide-free form of ARL6. Furthermore, IFT27 prevents aggregation of nucleotide-free ARL6 in solution. Thus, we propose that IFT27 separates from IFT-B inside cilia to promote ARL6 activation, BBSome coat assembly and subsequent ciliary exit, mirroring the process by which BBSome mediates cargo entry into cilia. PMID:25443296

  19. Getting to the heart of intraflagellar transport using Trypanosoma and Chlamydomonas models: the strength is in their differences

    PubMed Central

    2013-01-01

    Cilia and flagella perform diverse roles in motility and sensory perception, and defects in their construction or their function are responsible for human genetic diseases termed ciliopathies. Cilia and flagella construction relies on intraflagellar transport (IFT), the bi-directional movement of ‘trains’ composed of protein complexes found between axoneme microtubules and the flagellum membrane. Although extensive information about IFT components and their mode of action were discovered in the green algae Chlamydomonas reinhardtii, other model organisms have revealed further insights about IFT. This is the case of Trypanosoma brucei, a flagellated protist responsible for sleeping sickness that is turning out to be an emerging model for studying IFT. In this article, we review different aspects of IFT, based on studies of Chlamydomonas and Trypanosoma. Data available from both models are examined to ask challenging questions about IFT such as the initiation of flagellum construction, the setting-up of IFT and the mode of formation of IFT trains, and their remodeling at the tip as well as their recycling at the base. Another outstanding question is the individual role played by the multiple IFT proteins. The use of different models, bringing their specific biological and experimental advantages, will be invaluable in order to obtain a global understanding of IFT. PMID:24289478

  20. Components of Intraflagellar Transport Complex A Function Independently of the Cilium to Regulate Canonical Wnt Signaling in Drosophila.

    PubMed

    Balmer, Sophie; Dussert, Aurore; Collu, Giovanna M; Benitez, Elvira; Iomini, Carlo; Mlodzik, Marek

    2015-09-28

    The development of multicellular organisms requires the precisely coordinated regulation of an evolutionarily conserved group of signaling pathways. Temporal and spatial control of these signaling cascades is achieved through networks of regulatory proteins, segregation of pathway components in specific subcellular compartments, or both. In vertebrates, dysregulation of primary cilia function has been strongly linked to developmental signaling defects, yet it remains unclear whether cilia sequester pathway components to regulate their activation or cilia-associated proteins directly modulate developmental signaling events. To elucidate this question, we conducted an RNAi-based screen in Drosophila non-ciliated cells to test for cilium-independent loss-of-function phenotypes of ciliary proteins in developmental signaling pathways. Our results show no effect on Hedgehog signaling. In contrast, our screen identified several cilia-associated proteins as functioning in canonical Wnt signaling. Further characterization of specific components of Intraflagellar Transport complex A uncovered a cilia-independent function in potentiating Wnt signals by promoting β-catenin/Armadillo activity. PMID:26364750

  1. Gli2 and Gli3 Localize to Cilia and Require the Intraflagellar Transport Protein Polaris for Processing and Function

    SciTech Connect

    Michaud III, Edward J; Haycraft, Courtney J; Aydin Son, Yesim; Zhang, Qihong; Yoder, Bradley

    2005-01-01

    Intraflagellar transport (IFT) proteins are essential for cilia assembly and have recently been associated with a number of developmental processes, such as left-right axis specification and limb and neural tube patterning. Genetic studies indicate that IFT proteins are required for Sonic hedgehog (Shh)signaling downstream of the Smoothened and Patched membrane proteins but upstream of the Glioma (Gli) transcription factors. However, the role that IFT proteins play in transduction of Shh signaling and the importance of cilia in this process remain unknown. Here we provide insights into the mechanism by which defects in an IFT protein, Tg737/Polaris, affect Shh signaling in the murine limb bud. Our data show that loss of Tg737 results in altered Gli3 processing that abrogates Gli3-mediated repression of Gli1 transcriptional activity. In contrast to the conclusions drawn from genetic analysis, the activity of Gli1 and truncated forms of Gli3 (Gli3R) are unaffected in Tg737 mutants at the molecular level, indicating that Tg737/Polaris is differentially involved in specific activities of the Gli proteins. Most important, a negative regulator of Shh signaling, Suppressor of fused, and the three full-length Gli transcription factors localize to the distal tip of cilia in addition to the nucleus. Thus, our data support a model where cilia have a direct role in Gli processing and Shh signal transduction.

  2. Regulation of Cilium Length and Intraflagellar Transport by the RCK-Kinases ICK and MOK in Renal Epithelial Cells

    PubMed Central

    Broekhuis, Joost R.; Verhey, Kristen J.; Jansen, Gert

    2014-01-01

    Primary cilia are important sensory organelles. They exist in a wide variety of lengths, which could reflect different cell-specific functions. How cilium length is regulated is unclear, but it probably involves intraflagellar transport (IFT), which transports protein complexes along the ciliary axoneme. Studies in various organisms have identified the small, conserved family of ros-cross hybridizing kinases (RCK) as regulators of cilium length. Here we show that Intestinal Cell Kinase (ICK) and MAPK/MAK/MRK overlapping kinase (MOK), two members of this family, localize to cilia of mouse renal epithelial (IMCD-3) cells and negatively regulate cilium length. To analyze the effects of ICK and MOK on the IFT machinery, we set up live imaging of five fluorescently tagged IFT proteins: KIF3B, a subunit of kinesin-II, the main anterograde IFT motor, complex A protein IFT43, complex B protein IFT20, BBSome protein BBS8 and homodimeric kinesin KIF17, whose function in mammalian cilia is unclear. Interestingly, all five proteins moved at ∼0.45 µm/s in anterograde and retrograde direction, suggesting they are all transported by the same machinery. Moreover, GFP tagged ICK and MOK moved at similar velocities as the IFT proteins, suggesting they are part of, or transported by the IFT machinery. Indeed, loss- or gain-of-function of ICK affected IFT speeds: knockdown increased anterograde velocities, whereas overexpression reduced retrograde speed. In contrast, MOK knockdown or overexpression did not affect IFT speeds. Finally, we found that the effects of ICK or MOK knockdown on cilium length and IFT are suppressed by rapamycin treatment, suggesting that these effects require the mTORC1 pathway. Our results confirm the importance of RCK kinases as regulators of cilium length and IFT. However, whereas some of our results suggest a direct correlation between cilium length and IFT speed, other results indicate that cilium length can be modulated independent of IFT speed. PMID

  3. Interaction of mouse TTC30/DYF-1 with multiple intraflagellar transport complex B proteins and KIF17.

    PubMed

    Howard, Paul W; Jue, Shall F; Maurer, Richard A

    2013-08-15

    Intraflagellar transport (IFT) is a microtubule based system that supports the assembly and maintenance of cilia. Genetic and biochemical studies have identified two distinct complexes containing multiple proteins that are part of the IFT machinery. In this study we prepared mouse pituitary cells that expressed an epitope-tagged IFT protein and immuno-purified the IFT B complex from these cells. Mass spectrometry analysis of the isolated complex led to identification of a number of well known components of the IFT B complex. In addition, peptides corresponding to mouse tetratricopeptide repeat proteins, TTC30A1, TTC30A2 and TTC30B were identified. The mouse Ttc30A1, Ttc30A2, Ttc30B genes are orthologs of Caenorhabditis elegans dyf-1, which is required for assembly of the distal segment of the cilia. We used co-immunoprecipitation studies to provide evidence that, TTC30A1, TTC30A2 or TTC30B can be incorporated into a complex with a known IFT B protein, IFT52. We also found that TTC30B can interact with mouse KIF17, a kinesin which participates in IFT. In vitro expression in a cell-free system followed by co-immunoprecipitation also provided evidence that TTC30B can directly interact with several different IFT B complex proteins. The findings support the view that mouse TTC30A1, TTC30A2 and TTC30B can contribute to the IFT B complex, likely through interactions with multiple IFT proteins and also suggest a possible link to the molecular motor, KIF17 to support transport of cargo during IFT. PMID:23810713

  4. Interaction of mouse TTC30/DYF-1 with multiple intraflagellar transport complex B proteins and KIF17

    PubMed Central

    Howard, Paul W.; Jue, Shall F.; Maurer, Richard A.

    2013-01-01

    Intraflagellar transport (IFT) is a microtubule based system that supports the assembly and maintenance of cilia. Genetic and biochemical studies have identified two distinct complexes containing multiple proteins that are part of the IFT machinery. In this study we prepared mouse pituitary cells that expressed an epitope-tagged IFT protein and immuno-purified the IFT B complex from these cells. Mass spectrometry analysis of the isolated complex led to identification of a number of well known components of the IFT B complex. In addition, peptides corresponding to mouse tetratricopeptide repeat proteins, TTC30A1, TTC30A2 and TTC30B were identified. The mouse Ttc30A1, Ttc30A2, Ttc30B genes are orthologs of Caenorhabditis elegans dyf-1, which is required for assembly of the distal segment of the cilia. We used co-immunoprecipitation studies to provide evidence that, TTC30A1, TTC30A2 or TTC30B can be incorporated into a complex with a known IFT B protein, IFT52. We also found that TTC30B can interact with mouse KIF17, a kinesin which participates in IFT. In vitro expression in a cell-free system followed by co-immunoprecipitation also provided evidence that TTC30B can directly interact with several different IFT B complex proteins. The findings support the view that mouse TTC30A1, TTC30A2 and TTC30B can contribute to the IFT B complex, likely through interactions with multiple IFT proteins and also suggest a possible link to the molecular motor, KIF17 to support transport of cargo during IFT. PMID:23810713

  5. Biochemical analysis of PIFTC3, the Trypanosoma brucei orthologue of nematode DYF-13, reveals interactions with established and putative intraflagellar transport components.

    PubMed

    Franklin, Joseph B; Ullu, Elisabetta

    2010-10-01

    DYF-13, originally identified in Caenorhabditis elegans within a collection of dye-filling chemosensory mutants, is one of several proteins that have been classified as putatively involved in intraflagellar transport (IFT), the bidirectional movement of protein complexes along cilia and flagella and specifically in anterograde IFT. Although genetic studies have highlighted a fundamental role of DYF-13 in nematode sensory cilium and trypanosome flagellum biogenesis, biochemical studies on DYF-13 have lagged behind. Here, we show that in Trypanosoma brucei the orthologue to DYF-13, PIFTC3, participates in a macromolecular complex of approximately 660 kDa. Mass spectroscopy of affinity-purified PIFTC3 revealed several components of IFT complex B as well as orthologues of putative IFT factors DYF-1, DYF-3, DYF-11/Elipsa and IFTA-2. DYF-11 was further analysed and shown to be concentrated near the basal bodies and in the flagellum, and to be required for flagellum elongation. In addition, by coimmunoprecipitation we detected an interaction between DYF-13 and IFT122, a component of IFT complex A, which is required for retrograde transport. Thus, our biochemical analysis supports the model, proposed by genetic analysis in C. elegans, that the trypanosome orthologue of DYF-13 plays a central role in the IFT mechanism. PMID:20923419

  6. Crystal structures of IFT70/52 and IFT52/46 provide insight into intraflagellar transport B core complex assembly

    PubMed Central

    Taschner, Michael; Kotsis, Fruzsina; Braeuer, Philipp; Kuehn, E. Wolfgang

    2014-01-01

    Cilia are microtubule-based organelles that assemble via intraflagellar transport (IFT) and function as signaling hubs on eukaryotic cells. IFT relies on molecular motors and IFT complexes that mediate the contacts with ciliary cargo. To elucidate the architecture of the IFT-B complex, we reconstituted and purified the nonameric IFT-B core from Chlamydomonas reinhardtii and determined the crystal structures of C. reinhardtii IFT70/52 and Tetrahymena IFT52/46 subcomplexes. The 2.5-Å resolution IFT70/52 structure shows that IFT52330–370 is buried deeply within the IFT70 tetratricopeptide repeat superhelix. Furthermore, the polycystic kidney disease protein IFT88 binds IFT52281–329 in a complex that interacts directly with IFT70/IFT52330–381 in trans. The structure of IFT52C/IFT46C was solved at 2.3 Å resolution, and we show that it is essential for IFT-B core integrity by mediating interaction between IFT88/70/52/46 and IFT81/74/27/25/22 subcomplexes. Consistent with this, overexpression of mammalian IFT52C in MDCK cells is dominant-negative and causes IFT protein mislocalization and disrupted ciliogenesis. These data further rationalize several ciliogenesis phenotypes of IFT mutant strains. PMID:25349261

  7. Intraflagellar transport proteins 172, 80, 57, 54, 38, and 20 form a stable tubulin-binding IFT-B2 complex.

    PubMed

    Taschner, Michael; Weber, Kristina; Mourão, André; Vetter, Melanie; Awasthi, Mayanka; Stiegler, Marc; Bhogaraju, Sagar; Lorentzen, Esben

    2016-04-01

    Intraflagellar transport (IFT) relies on the IFT complex and is required for ciliogenesis. The IFT-B complex consists of 9-10 stably associated core subunits and six "peripheral" subunits that were shown to dissociate from the core structure at moderate salt concentration. We purified the six "peripheral"IFT-B subunits of Chlamydomonas reinhardtiias recombinant proteins and show that they form a stable complex independently of the IFT-B core. We suggest a nomenclature of IFT-B1 (core) and IFT-B2 (peripheral) for the two IFT-B subcomplexes. We demonstrate that IFT88, together with the N-terminal domain of IFT52, is necessary to bridge the interaction between IFT-B1 and B2. The crystal structure of IFT52N reveals highly conserved residues critical for IFT-B1/IFT-B2 complex formation. Furthermore, we show that of the three IFT-B2 subunits containing a calponin homology (CH) domain (IFT38, 54, and 57), only IFT54 binds αβ-tubulin as a potential IFT cargo, whereas the CH domains of IFT38 and IFT57 mediate the interaction with IFT80 and IFT172, respectively. Crystal structures of IFT54 CH domains reveal that tubulin binding is mediated by basic surface-exposed residues. PMID:26912722

  8. Overall Architecture of the Intraflagellar Transport (IFT)-B Complex Containing Cluap1/IFT38 as an Essential Component of the IFT-B Peripheral Subcomplex.

    PubMed

    Katoh, Yohei; Terada, Masaya; Nishijima, Yuya; Takei, Ryota; Nozaki, Shohei; Hamada, Hiroshi; Nakayama, Kazuhisa

    2016-05-20

    Intraflagellar transport (IFT) is essential for assembly and maintenance of cilia and flagella as well as ciliary motility and signaling. IFT is mediated by multisubunit complexes, including IFT-A, IFT-B, and the BBSome, in concert with kinesin and dynein motors. Under high salt conditions, purified IFT-B complex dissociates into a core subcomplex composed of at least nine subunits and at least five peripherally associated proteins. Using the visible immunoprecipitation assay, which we recently developed as a convenient protein-protein interaction assay, we determined the overall architecture of the IFT-B complex, which can be divided into core and peripheral subcomplexes composed of 10 and 6 subunits, respectively. In particular, we identified TTC26/IFT56 and Cluap1/IFT38, neither of which was included with certainty in previous models of the IFT-B complex, as integral components of the core and peripheral subcomplexes, respectively. Consistent with this, a ciliogenesis defect of Cluap1-deficient mouse embryonic fibroblasts was rescued by exogenous expression of wild-type Cluap1 but not by mutant Cluap1 lacking the binding ability to other IFT-B components. The detailed interaction map as well as comparison of subcellular localization of IFT-B components between wild-type and Cluap1-deficient cells provides insights into the functional relevance of the architecture of the IFT-B complex. PMID:26980730

  9. Defective ciliogenesis, embryonic lethality and severe impairment of the Sonic Hedgehog pathway caused by inactivation of the mouse complex A intraflagellar transport gene Ift122/Wdr10, partially overlapping with the DNA repair gene Med1/Mbd4

    PubMed Central

    Cortellino, Salvatore; Wang, Chengbing; Wang, Baolin; Bassi, Maria Rosaria; Caretti, Elena; Champeval, Delphine; Calmont, Amelie; Jarnik, Michal; Burch, John; Zaret, Kenneth; Larue, Lionel; Bellacosa, Alfonso

    2009-01-01

    Primary cilia are assembled and maintained by evolutionarily conserved intraflagellar transport (IFT) proteins that are involved in the coordinated movement of macromolecular cargo from the basal body to the cilium tip and back. The IFT machinery is organized in two structural complexes named complex A and complex B. Recently, inactivation in the mouse germline of Ift genes belonging to complex B revealed a requirement of ciliogenesis, or proteins involved in ciliogenesis, for Sonic Hedgehog (Shh) signaling in mammals. Here we report on a complex A mutant mouse, defective for the Ift122 gene. Ift122-null embryos show multiple developmental defects (exencephaly, situs viscerum inversus, delay in turning, hemorrhage and defects in limb development) that result in lethality. In the node, primary cilia were absent or malformed in homozygous mutant and heterozygous embryos, respectively. Impairment of the Shh pathway was apparent in both neural tube patterning (expansion of motoneurons and rostro-caudal level-dependent contraction or expansion of the dorso-lateral interneurons), and limb patterning (ectrosyndactyly). These phenotypes are distinct from both complex B IFT mutant embryos and embryos defective for the ciliary protein hennin/Arl13b, and suggest reduced levels of both Gli2/Gli3 activator and Gli3 repressor functions. We conclude that complex A and complex B factors play similar but distinct roles in ciliogenesis and Shh/Gli3 signaling. PMID:19000668

  10. Summary of Alpha Particle Transport

    SciTech Connect

    Medley, S.S.; White, R.B.; Zweben, S.J.

    1998-08-19

    This paper summarizes the talks on alpha particle transport which were presented at the 5th International Atomic Energy Agency's Technical Committee Meeting on "Alpha Particles in Fusion Research" held at the Joint European Torus, England in September 1997.

  11. Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport.

    PubMed

    Phirke, Prasad; Efimenko, Evgeni; Mohan, Swetha; Burghoorn, Jan; Crona, Filip; Bakhoum, Mathieu W; Trieb, Maria; Schuske, Kim; Jorgensen, Erik M; Piasecki, Brian P; Leroux, Michel R; Swoboda, Peter

    2011-09-01

    Cilia are ubiquitous cell surface projections that mediate various sensory- and motility-based processes and are implicated in a growing number of multi-organ genetic disorders termed ciliopathies. To identify new components required for cilium biogenesis and function, we sought to further define and validate the transcriptional targets of DAF-19, the ciliogenic C. elegans RFX transcription factor. Transcriptional profiling of daf-19 mutants (which do not form cilia) and wild-type animals was performed using embryos staged to when the cell types developing cilia in the worm, the ciliated sensory neurons (CSNs), still differentiate. Comparisons between the two populations revealed 881 differentially regulated genes with greater than a 1.5-fold increase or decrease in expression. A subset of these was confirmed by quantitative RT-PCR. Transgenic worms expressing transcriptional GFP fusions revealed CSN-specific expression patterns for 11 of 14 candidate genes. We show that two uncharacterized candidate genes, termed dyf-17 and dyf-18 because their corresponding mutants display dye-filling (Dyf) defects, are important for ciliogenesis. DYF-17 localizes at the base of cilia and is specifically required for building the distal segment of sensory cilia. DYF-18 is an evolutionarily conserved CDK7/CCRK/LF2p-related serine/threonine kinase that is necessary for the proper function of intraflagellar transport, a process critical for cilium biogenesis. Together, our microarray study identifies targets of the evolutionarily conserved RFX transcription factor, DAF-19, providing a rich dataset from which to uncover-in addition to DYF-17 and DYF-18-cellular components important for cilium formation and function. PMID:21740898

  12. Particle transport in plasma reactors

    SciTech Connect

    Rader, D.J.; Geller, A.S.; Choi, Seung J.; Kushner, M.J.

    1995-01-01

    SEMATECH and the Department of Energy have established a Contamination Free Manufacturing Research Center (CFMRC) located at Sandia National Laboratories. One of the programs underway at the CFMRC is directed towards defect reduction in semiconductor process reactors by the application of computational modeling. The goal is to use fluid, thermal, plasma, and particle transport models to identify process conditions and tool designs that reduce the deposition rate of particles on wafers. The program is directed toward defect reduction in specific manufacturing tools, although some model development is undertaken when needed. The need to produce quantifiable improvements in tool defect performance requires the close cooperation among Sandia, universities, SEMATECH, SEMATECH member companies, and equipment manufacturers. Currently, both plasma (e.g., etch, PECVD) and nonplasma tools (e.g., LPCVD, rinse tanks) are being worked on under this program. In this paper the authors summarize their recent efforts to reduce particle deposition on wafers during plasma-based semiconductor manufacturing.

  13. Transport of sputtered neutral particles

    SciTech Connect

    Parker, G.J.; Hitchon, W.N.G.; Koch, D.J. ||

    1995-04-01

    The initial deposition rate of sputtered material along the walls of a trench is calculated numerically. The numerical scheme is a nonstatistical description of long-mean-free-path transport in the gas phase. Gas-phase collisions are included by using a ``transition matrix`` to describe the particle motion, which in the present work is from the source through a cylindrical chamber and into a rectangular trench. The method is much faster and somewhat more accurate than Monte Carlo methods. Initial deposition rates of sputtered material along the walls of the trench are presented for various physical and geometrical situations, and the deposition rates are compared to other computational and experimental results.

  14. Ordered transport and identification of particles

    DOEpatents

    Shera, E. Brooks

    1993-01-01

    A method and apparatus are provided for application of electrical field gradients to induce particle velocities to enable particle sequence and identification information to be obtained. Particle sequence is maintained by providing electroosmotic flow for an electrolytic solution in a particle transport tube. The transport tube and electrolytic solution are selected to provide an electroosmotic radius of >100 so that a plug flow profile is obtained for the electrolytic solution in the transport tube. Thus, particles are maintained in the same order in which they are introduced in the transport tube. When the particles also have known electrophoretic velocities, the field gradients introduce an electrophoretic velocity component onto the electroosmotic velocity. The time that the particles pass selected locations along the transport tube may then be detected and the electrophoretic velocity component calculated for particle identification. One particular application is the ordered transport and identification of labeled nucleotides sequentially cleaved from a strand of DNA.

  15. Ordered transport and identification of particles

    DOEpatents

    Shera, E.B.

    1993-05-11

    A method and apparatus are provided for application of electrical field gradients to induce particle velocities to enable particle sequence and identification information to be obtained. Particle sequence is maintained by providing electroosmotic flow for an electrolytic solution in a particle transport tube. The transport tube and electrolytic solution are selected to provide an electroosmotic radius of >100 so that a plug flow profile is obtained for the electrolytic solution in the transport tube. Thus, particles are maintained in the same order in which they are introduced in the transport tube. When the particles also have known electrophoretic velocities, the field gradients introduce an electrophoretic velocity component onto the electroosmotic velocity. The time that the particles pass selected locations along the transport tube may then be detected and the electrophoretic velocity component calculated for particle identification. One particular application is the ordered transport and identification of labeled nucleotides sequentially cleaved from a strand of DNA.

  16. Quadrupole Induced Resonant Particle Transport

    NASA Astrophysics Data System (ADS)

    Gilson, Erik; Fajans, Joel

    1999-11-01

    We have performed experiments that explore the effects of a magnetic quadrupole field on a pure electron plasma confined in a Malmberg-Penning trap. A model that we have developed describes the shape of the plasma and shows that a certain class of resonant particles follows trajectories that take them out of the plasma. Even though the quadrupole field destroys the cylindrical symmetry of the system, our theory predicts that if the electrons are off resonance, then the lifetime of the plasma will not be greatly affected by the quadrupole field. Our preliminary experimental results show that the shape of the plasma and the plasma lifetime agree with our model. We are investigating the scaling of this behavior with various experimental parameters such as the plasma length, density, and strength of the quadrupole field. In addition to being an example of resonant particle transport, this effect may find practical applications in experiments that plan to use magnetic quadrupole neutral atom traps to confine anti-hydrogen created in double-well positron/anti-proton Malmberg-Penning traps. (ATHENA Collaboration.)

  17. Quadrupole Induced Resonant Particle Transport

    NASA Astrophysics Data System (ADS)

    Gilson, Erik; Fajans, Joel

    1998-11-01

    We have performed experiments that explore the effects of a magnetic quadrupole field on a pure electron plasma confined in a Penning-Malmberg trap. A model that we have developed describes the shape of the plasma and shows that a certain class of resonant particles follows trajectories that take them out of the plasma. Even though the quadrupole field destroys the cylindrical symmetry of the system, our theory predicts that if the electrons are off resonance, then the lifetime of the plasma will not be greatly affected by the quadrupole field. Our preliminary experimental results show that the shape of the plasma and the plasma lifetime agree with our model. We are investigating the scaling of this behavior with various experimental parameters such as the plasma length, density, and strength of the quadrupole field. In addition to being an example of resonant particle transport, this effect may find practical applications in experiments that plan to use magnetic quadrupole neutral atom traps to confine anti-hydrogen created in double-well positron/anti-proton Penning-Malmberg traps. (ATHENA Collaboration.)

  18. Particle transport induced by electrostatic wave fluctuations

    NASA Astrophysics Data System (ADS)

    Rosalem, K. C.; Roberto, M.; Caldas, I. L.

    2015-10-01

    Particle transport driven by electrostatic waves at the plasma edge is numerically investigated, for large aspect ratio tokamaks, by considering a kinetic model derived from guiding-center equations of motion. Initially, the transport is estimated for trajectories obtained from differential equations for a wave spectrum generated by a dominant spatial mode and three time modes. Then, in case of infinite time modes, the differential equations of motion are used to introduce a symplectic map that allows to analyze the particle transport. The particle transport barriers are observed for spatial localized dominant perturbation and infinite modes. In presence of infinite spatial modes, periodic islands arise in between chaotic trajectories at the plasma edge.

  19. Ratchet transport powered by chiral active particles

    PubMed Central

    Ai, Bao-quan

    2016-01-01

    We numerically investigate the ratchet transport of mixtures of active and passive particles in a transversal asymmetric channel. A big passive particle is immersed in a ‘sea’ of active particles. Due to the chirality of active particles, the longitudinal directed transport is induced by the transversal asymmetry. For the active particles, the chirality completely determines the direction of the ratchet transport, the counterclockwise and clockwise particles move to the opposite directions and can be separated. However, for the passive particle, the transport behavior becomes complicated, the direction is determined by competitions among the chirality, the self-propulsion speed, and the packing fraction. Interestingly, within certain parameters, the passive particle moves to the left, while active particles move to the right. In addition, there exist optimal parameters (the chirality, the height of the barrier, the self-propulsion speed and the packing fraction) at which the rectified efficiency takes its maximal value. Our findings could be used for the experimental pursuit of the ratchet transport powered by chiral active particles. PMID:26795952

  20. Ratchet transport powered by chiral active particles

    NASA Astrophysics Data System (ADS)

    Ai, Bao-Quan

    2016-01-01

    We numerically investigate the ratchet transport of mixtures of active and passive particles in a transversal asymmetric channel. A big passive particle is immersed in a ‘sea’ of active particles. Due to the chirality of active particles, the longitudinal directed transport is induced by the transversal asymmetry. For the active particles, the chirality completely determines the direction of the ratchet transport, the counterclockwise and clockwise particles move to the opposite directions and can be separated. However, for the passive particle, the transport behavior becomes complicated, the direction is determined by competitions among the chirality, the self-propulsion speed, and the packing fraction. Interestingly, within certain parameters, the passive particle moves to the left, while active particles move to the right. In addition, there exist optimal parameters (the chirality, the height of the barrier, the self-propulsion speed and the packing fraction) at which the rectified efficiency takes its maximal value. Our findings could be used for the experimental pursuit of the ratchet transport powered by chiral active particles.

  1. Ratchet transport powered by chiral active particles.

    PubMed

    Ai, Bao-quan

    2016-01-01

    We numerically investigate the ratchet transport of mixtures of active and passive particles in a transversal asymmetric channel. A big passive particle is immersed in a 'sea' of active particles. Due to the chirality of active particles, the longitudinal directed transport is induced by the transversal asymmetry. For the active particles, the chirality completely determines the direction of the ratchet transport, the counterclockwise and clockwise particles move to the opposite directions and can be separated. However, for the passive particle, the transport behavior becomes complicated, the direction is determined by competitions among the chirality, the self-propulsion speed, and the packing fraction. Interestingly, within certain parameters, the passive particle moves to the left, while active particles move to the right. In addition, there exist optimal parameters (the chirality, the height of the barrier, the self-propulsion speed and the packing fraction) at which the rectified efficiency takes its maximal value. Our findings could be used for the experimental pursuit of the ratchet transport powered by chiral active particles. PMID:26795952

  2. Lattice Boltzmann Simulations of Peristaltic Particle Transport

    NASA Astrophysics Data System (ADS)

    Connington, Kevin; Kang, Qinjun; Viswanathan, Hari; Chen, Shiyi; Abdel-Fattah, Amr

    2008-11-01

    A peristaltic flow occurs when a tube or channel with flexible walls transports the contained fluid by progressing a series of contraction or expansion waves along the length of those walls. It is a mechanism used to transport fluid and immersed solid particles when it is ineffective or impossible to impose a favorable pressure gradient or desirous to avoid contact between the transported mixture and mechanical moving parts. Peristaltic transport occurs in many physiological situations and has myriad industrial applications. We focus our study on the peristaltic transport of a macroscopic particle in a two dimensional channel using the Lattice Boltzmann Method (LBM). We systematically investigate the effect of variation of the relevant non-dimensional parameters of the system on the particle transport. We examine the particle behavior when the system exhibits the peculiar phenomenon of fluid ``trapping.'' Finally, we analyze how the particle presence affects stress, pressure, and dissipation in the fluid in hopes of determining preferred working conditions for peristaltic transport of shear-sensitive particles.

  3. Particle transport in planetary magnetospheres

    SciTech Connect

    Birmingham, T.J.

    1984-11-01

    Particle energization in Earth's and Jupiter's magnetospheres is discussed. Understanding of the large scale magnetic and electric fields in which charged particles move is reviewed. Orbit theory in the adiabatic approximation is sketched. General conditions for adiabatic breakdown at each of three levels of periodicity are presented. High energy losses and lower energy sources argue for the existence of magnetospheric accelerations. Nonadiabatic acceleration processes are mentioned. Slow diffusive energization by particle interactions with electromagnetic fluctuations is outlined. This mechanism seems adequate at Earth but, operating alone, is unconvincing for Jupiter. Adding spatial diffusion in the radially distended Jovian magnetodisk may resolve the difficulty. (ESA)

  4. Particle Transport in Parallel-Plate Reactors

    SciTech Connect

    Rader, D.J.; Geller, A.S.

    1999-08-01

    A major cause of semiconductor yield degradation is contaminant particles that deposit on wafers while they reside in processing tools during integrated circuit manufacturing. This report presents numerical models for assessing particle transport and deposition in a parallel-plate geometry characteristic of a wide range of single-wafer processing tools: uniform downward flow exiting a perforated-plate showerhead separated by a gap from a circular wafer resting on a parallel susceptor. Particles are assumed to originate either upstream of the showerhead or from a specified position between the plates. The physical mechanisms controlling particle deposition and transport (inertia, diffusion, fluid drag, and external forces) are reviewed, with an emphasis on conditions encountered in semiconductor process tools (i.e., sub-atmospheric pressures and submicron particles). Isothermal flow is assumed, although small temperature differences are allowed to drive particle thermophoresis. Numerical solutions of the flow field are presented which agree with an analytic, creeping-flow expression for Re < 4. Deposition is quantified by use of a particle collection efficiency, which is defined as the fraction of particles in the reactor that deposit on the wafer. Analytic expressions for collection efficiency are presented for the limiting case where external forces control deposition (i.e., neglecting particle diffusion and inertia). Deposition from simultaneous particle diffusion and external forces is analyzed by an Eulerian formulation; for creeping flow and particles released from a planar trap, the analysis yields an analytic, integral expression for particle deposition based on process and particle properties. Deposition from simultaneous particle inertia and external forces is analyzed by a Lagrangian formulation, which can describe inertia-enhanced deposition resulting from particle acceleration in the showerhead. An approximate analytic expression is derived for particle

  5. Magnetotail particle dynamics and transport

    NASA Astrophysics Data System (ADS)

    Speiser, Theodore W.

    1995-06-01

    The main thrust of our research is to study the consequences of particle dynamics in the current sheet region of the magnetotail. The importance of understanding particle dynamics, in and near current sheets, cannot be over estimated, especially in light of NASA's recent interest in developing global circulation models to predict space weather. We have embarked on a long-term study to investigate the electrical resistance due to chaotic behavior, compare this resistance to inertial effects, and relate it to that resistance required in MHD modeling for reconnection to proceed. Using a single-particle model and observations, we have also found that a neutral line region can be remotely sensed. We plan to evaluate other cases of satellite observations near times of substorm onset to elucidate the relationship between the temporal development of a near-Earth neutral line and onset.

  6. Magnetotail particle dynamics and transport

    NASA Technical Reports Server (NTRS)

    Speiser, Theodore W.

    1995-01-01

    The main thrust of our research is to study the consequences of particle dynamics in the current sheet region of the magnetotail. The importance of understanding particle dynamics, in and near current sheets, cannot be over estimated, especially in light of NASA's recent interest in developing global circulation models to predict space weather. We have embarked on a long-term study to investigate the electrical resistance due to chaotic behavior, compare this resistance to inertial effects, and relate it to that resistance required in MHD modeling for reconnection to proceed. Using a single-particle model and observations, we have also found that a neutral line region can be remotely sensed. We plan to evaluate other cases of satellite observations near times of substorm onset to elucidate the relationship between the temporal development of a near-Earth neutral line and onset.

  7. Particle transport in a moving corner

    NASA Astrophysics Data System (ADS)

    Laine-Pearson, F. E.; Hydon, P. E.

    2006-07-01

    This paper describes particle transport in Stokes flow in a two-dimensional corner whose walls oscillate, which is a simple model for particle transport in the pulmonary alveoli. Formally speaking, the wall motion produces a perturbation to the well-known Moffatt corner eddies. However, this ‘perturbation’ is dominant as the corner is approached. The motion of particles is regular near to the corner. Far from the corner, chaotic motion within the main part of the flow is restricted to very small regions. We deduce that there is competition between the far-field motion that generates eddies and the wall motion. The relative strengths of these two motions determines whether a given particle moves regularly or chaotically. Consequently, there is an intermediate region in which chaotic transport is maximized.

  8. Particle transport and deposition: basic physics of particle kinetics

    PubMed Central

    Tsuda, Akira; Henry, Frank S.; Butler, James P.

    2015-01-01

    The human body interacts with the environment in many different ways. The lungs interact with the external environment through breathing. The enormously large surface area of the lung with its extremely thin air-blood barrier is exposed to particles suspended in the inhaled air. Whereas the particle-lung interaction may cause deleterious effects on health if the inhaled pollutant aerosols are toxic, this interaction can be beneficial for disease treatment if the inhaled particles are therapeutic aerosolized drug. In either case, an accurate estimation of dose and sites of deposition in the respiratory tract is fundamental to understanding subsequent biological response, and the basic physics of particle motion and engineering knowledge needed to understand these subjects is the topic of this chapter. A large portion of this chapter deals with three fundamental areas necessary to the understanding of particle transport and deposition in the respiratory tract. These are: 1) the physical characteristics of particles, 2) particle behavior in gas flow, and 3) gas flow patterns in the respiratory tract. Other areas, such as particle transport in the developing lung and in the diseased lung are also considered. The chapter concludes with a summary and a brief discussion of areas of future research. PMID:24265235

  9. Turbulence driven particle transport in Texas Helimak

    SciTech Connect

    Toufen, D. L.; Guimaraes-Filho, Z. O.; Marcus, F. A.; Caldas, I. L.; Gentle, K. W.

    2012-01-15

    We analyze the turbulence driven particle transport in Texas Helimak [K. W. Gentle and H. He, Plasma Sci. Technol. 10, 284 (2008)], a toroidal plasma device with a one-dimensional equilibrium with magnetic curvature and shear. Alterations on the radial electric field, through an external voltage bias, change the spectral plasma characteristics inducing a dominant frequency for negative bias values and a broad band frequency spectrum for positive bias values. When applying a negative bias, the transport is high where the waves propagate with phase velocities near the plasma flow velocity, an indication that the transport is strongly affected by a wave particle resonant interaction. On the other hand, for positive bias values, the plasma has a reversed shear flow, and we observe that the transport is almost zero in the shearless radial region, an evidence of a transport barrier in this region.

  10. Kinetic transport simulation of energetic particles

    NASA Astrophysics Data System (ADS)

    Sheng, He; Waltz, R. E.

    2016-05-01

    A kinetic transport code (EPtran) is developed for the transport of the energetic particles (EPs). The EPtran code evolves the EP distribution function in radius, energy, and pitch angle phase space (r, E, λ) to steady state with classical slowing down, pitch angle scattering, as well as radial and energy transport of the injected EPs (neutral beam injection (NBI) or fusion alpha). The EPtran code is illustrated by treating the transport of NBI fast ions from high-n ITG/TEM micro-turbulence and EP driven unstable low-n Alfvén eigenmodes (AEs) in a well-studied DIII-D NBI heated discharge with significant AE central core loss. The kinetic transport code results for this discharge are compared with previous study using a simple EP density moment transport code ALPHA (R.E. Waltz and E.M. Bass 2014 Nucl. Fusion 54 104006). The dominant EP-AE transport is treated with a local stiff critical EP density (or equivalent pressure) gradient radial transport model modified to include energy-dependence and the nonlocal effects EP drift orbits. All previous EP transport models assume that the EP velocity space distribution function is not significantly distorted from the classical ‘no transport’ slowing down distribution. Important transport distortions away from the slowing down EP spectrum are illustrated by a focus on the coefficient of convection: EP energy flux divided by the product of EP average energy and EP particle flux.

  11. Transport of particles across continental shelves

    SciTech Connect

    Nittrouer, C.A. ); Wright, L.D. College of William and Mary, Gloucester Point, VA )

    1994-02-01

    Transport of particulate material across continental shelves is well demonstrated by the distributions on the seabed and in the water column of geological, chemical, or biological components, whose sources are found farther landward or farther seaward. This paper addresses passive (incapable of swimming) particles and their transport across (not necessarily off) continental shelves during high stands of sea level. Among the general factors that influence across-shelf transport are shelf geometry, latitudinal constraints, and the timescale of interest. Research studies have investigated the physical mechanisms of transport and have made quantitative estimates of mass flux across continental shelves. Important mechanisms include wind-driven flows, internal wave, wave-orbital flows, infragravity phenomena, buoyant plumes, and surf zone processes. Most particulate transport occurs in the portion of the water column closest to the seabed. Therefore physical processes are effective where and when they influence the bottom boundary layer, causing shear stresses sufficient to erode and transport particulate material. Biological and geological processes at the seabed play important roles within the boundary layer. The coupling of hydrodynamic forces from currents and surface gravity waves has a particularly strong influence on across-shelf transport; during storm events, the combined effect can transport particles tens of kilometers seaward. Several important mechanisms can cause bidirectional (seaward and landward) transport, and estimates of the net flux are difficult to obtain. Also, measurements of across-shelf transport are made difficult by the dominance of along-shelf transport. Geological parameters are often the best indicators of net across-shelf transport integrated over time scales longer than a month. For example, fluvially discharged particles with distinct composition commonly accumulate in the midshelf region. 47 refs., 16 figs.

  12. Deterministic particle transport in a ratchet flow

    NASA Astrophysics Data System (ADS)

    Beltrame, Philippe; Makhoul, Mounia; Joelson, Maminirina

    2016-01-01

    This study is motivated by the issue of the pumping of particle through a periodic modulated channel. We focus on a simplified deterministic model of small inertia particles within the Stokes flow framework that we call "ratchet flow." A path-following method is employed in the parameter space in order to retrace the scenario which from bounded periodic solutions leads to particle transport. Depending on whether the magnitude of the particle drag is moderate or large, two main transport mechanisms are identified in which the role of the parity symmetry of the flow differs. For large drag, transport is induced by flow asymmetry, while for moderate drag, since the full transport solution bifurcation structure already exists for symmetric settings, flow asymmetry only makes the transport effective. We analyzed the scenarios of current reversals for each mechanism as well as the role of synchronization. In particular we show that, for large drag, the particle drift is similar to phase slip in a synchronization problem.

  13. Aeolian particle flux profiles and transport unsteadiness

    NASA Astrophysics Data System (ADS)

    Bauer, Bernard O.; Davidson-Arnott, Robin G. D.

    2014-07-01

    Vertical profiles of aeolian sediment flux are commonly modeled as an exponential decay of particle (mass) transport with height above the surface. Data from field and wind-tunnel studies provide empirical support for this parameterization, although a large degree of variation in the precise shape of the vertical flux profile has been reported. This paper explores the potential influence of wind unsteadiness and time-varying intensity of transport on the geometry (slope, curvature) of aeolian particle flux profiles. Field evidence from a complex foredune environment demonstrates that (i) the time series of wind and sediment particle flux are often extremely variable with periods of intense transport (referred to herein as sediment "flurries") separated by periods of weak or no transport; (ii) sediment flurries contribute the majority of transport in a minority of the time; (iii) the structure of a flurry includes a "ramp-up" phase lasting a few seconds, a "core" phase lasting a few seconds to many tens of seconds, and a "ramp-down" phase lasting a few seconds during which the system relaxes to a background, low-intensity transport state; and (iv) conditional averaging of flux profiles for flurry and nonflurry periods reveals differences between the geometry of the mean profiles and hence the transport states that produce them. These results caution against the indiscriminate reliance on regression statistics derived from time-averaged sediment flux profiles, especially those with significant flurry and nonflurry periods, when calibrating or assessing the validity of steady state models of aeolian saltation.

  14. Modeling Particle Acceleration and Transport at CIRs

    NASA Astrophysics Data System (ADS)

    Li, G.; Zhao, L.; Ebert, R. W.; Desai, M. I.; Dayeh, M. A.; Mason, G. M.; Chen, Y.; Wu, Z.

    2014-12-01

    CIRs are a major site for particle acceleration during solar minimum. Earlier Ulysses observations have found that particles can be accelerated at both the forward and the reverse shocks that often form at a few AUs. The accelerated particles then propagate back to the Earth along Parker's field line. Theoretical calculations predicted a modulation of the spectrum at low energies, qualitatively agreed with obsevations at 1 AU. However, this picture was recently challenged by STEREO observations, where local accelerations near 1 AU were inferred in many events. In this work, we perform a detailed numerical calculation to study particle acceleration and transport in one CIR event which was observed by both ACE and STEREO spacecraft. We obtain particle currents at different heliocentric distances and different longitudes, as well as particle anisotropy. These values are compared with observations and the implication on the acceleration site and the interplanetary turbulence spectrum is discussed.

  15. Scalable Domain Decomposed Monte Carlo Particle Transport

    NASA Astrophysics Data System (ADS)

    O'Brien, Matthew Joseph

    In this dissertation, we present the parallel algorithms necessary to run domain decomposed Monte Carlo particle transport on large numbers of processors (millions of processors). Previous algorithms were not scalable, and the parallel overhead became more computationally costly than the numerical simulation. The main algorithms we consider are: • Domain decomposition of constructive solid geometry: enables extremely large calculations in which the background geometry is too large to fit in the memory of a single computational node. • Load Balancing: keeps the workload per processor as even as possible so the calculation runs efficiently. • Global Particle Find: if particles are on the wrong processor, globally resolve their locations to the correct processor based on particle coordinate and background domain. • Visualizing constructive solid geometry, sourcing particles, deciding that particle streaming communication is completed and spatial redecomposition. These algorithms are some of the most important parallel algorithms required for domain decomposed Monte Carlo particle transport. We demonstrate that our previous algorithms were not scalable, prove that our new algorithms are scalable, and run some of the algorithms up to 2 million MPI processes on the Sequoia supercomputer.

  16. Axonal transport of ribonucleoprotein particles (vaults).

    PubMed

    Li, J Y; Volknandt, W; Dahlstrom, A; Herrmann, C; Blasi, J; Das, B; Zimmermann, H

    1999-01-01

    RNA was previously shown to be transported into both dendritic and axonal compartments of nerve cells, presumably involving a ribonucleoprotein particle. In order to reveal potential mechanisms of transport we investigated the axonal transport of the major vault protein of the electric ray Torpedo marmorata. This protein is the major protein component of a ribonucleoprotein particle (vault) carrying a non-translatable RNA and has a wide distribution in the animal kingdom. It is highly enriched in the cholinergic electromotor neurons and similar in size to synaptic vesicles. The axonal transport of vaults was investigated by immunofluorescence, using the anti-vault protein antibody as marker, and cytofluorimetric scanning, and was compared to that of the synaptic vesicle membrane protein SV2 and of the beta-subunit of the F1-ATPase as a marker for mitochondria. Following a crush significant axonal accumulation of SV2 proximal to the crush could first be observed after 1 h, that of mitochondria after 3 h and that of vaults after 6 h, although weekly fluorescent traces of accumulations of vault protein were observed in the confocal microscope as early as 3 h. Within the time-period investigated (up to 72 h) the accumulation of all markers increased continuously. Retrograde accumulations also occurred, and the immunofluorescence for the retrograde component, indicating recycling, was weaker than that for the anterograde component, suggesting that more than half of the vaults are degraded within the nerve terminal. High resolution immunofluorescence revealed a granular structure-in accordance with the biochemical characteristics of vaults. Of interest was the observation that the increase of vault immunoreactivity proximal to the crush accelerated with time after crushing, while that of SV2-containing particles appeared to decelerate, indicating that the crush procedure with time may have induced perikaryal alterations in the production and subsequent export to the axon

  17. PROJECT 4 -- TRANSPORT AND FATE PARTICLES

    EPA Science Inventory

    These experiments use size and surface-fixed charge defined ultrafine particulates to provide baseline information on the time course and extent of their systemic absorption. Understanding the nature of particle transport in blood will be important for recognizing the likeliho...

  18. FLUKA: A Multi-Particle Transport Code

    SciTech Connect

    Ferrari, A.; Sala, P.R.; Fasso, A.; Ranft, J.; /Siegen U.

    2005-12-14

    This report describes the 2005 version of the Fluka particle transport code. The first part introduces the basic notions, describes the modular structure of the system, and contains an installation and beginner's guide. The second part complements this initial information with details about the various components of Fluka and how to use them. It concludes with a detailed history and bibliography.

  19. Scalable Domain Decomposed Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, Matthew Joseph

    2013-12-05

    In this dissertation, we present the parallel algorithms necessary to run domain decomposed Monte Carlo particle transport on large numbers of processors (millions of processors). Previous algorithms were not scalable, and the parallel overhead became more computationally costly than the numerical simulation.

  20. Particle simulation of transport in fusion devices

    SciTech Connect

    Procassini, R.J.; Birdsall, C.K.; Morse, E.C. . Electronics Research Lab.); Cohen, B.I. )

    1989-10-17

    Our research in the area of transport processes in fusion devices has recently been centered on the development of particle simulation models of transport in the scrape-off layer (SOL) of a diverted tokamak. As part of this research, we have been involved in the development of a suitable boundary condition for the plasma current at a floating plate that allows use of long time- and space-scale implicit simulation techniques. We have also been involved in a comparison of results from our particle-in-cell (PIC) code and a bounce-averaged Fokker-Planck (FP) code for the study of particle confinement in an auxiliary heated mirror plasma. 3 refs., 1 fig.

  1. Heavy particle transport in sputtering systems

    NASA Astrophysics Data System (ADS)

    Trieschmann, Jan

    2015-09-01

    This contribution aims to discuss the theoretical background of heavy particle transport in plasma sputtering systems such as direct current magnetron sputtering (dcMS), high power impulse magnetron sputtering (HiPIMS), or multi frequency capacitively coupled plasmas (MFCCP). Due to inherently low process pressures below one Pa only kinetic simulation models are suitable. In this work a model appropriate for the description of the transport of film forming particles sputtered of a target material has been devised within the frame of the OpenFOAM software (specifically dsmcFoam). The three dimensional model comprises of ejection of sputtered particles into the reactor chamber, their collisional transport through the volume, as well as deposition of the latter onto the surrounding surfaces (i.e. substrates, walls). An angular dependent Thompson energy distribution fitted to results from Monte-Carlo simulations is assumed initially. Binary collisions are treated via the M1 collision model, a modified variable hard sphere (VHS) model. The dynamics of sputtered and background gas species can be resolved self-consistently following the direct simulation Monte-Carlo (DSMC) approach or, whenever possible, simplified based on the test particle method (TPM) with the assumption of a constant, non-stationary background at a given temperature. At the example of an MFCCP research reactor the transport of sputtered aluminum is specifically discussed. For the peculiar configuration and under typical process conditions with argon as process gas the transport of aluminum sputtered of a circular target is shown to be governed by a one dimensional interaction of the imposed and backscattered particle fluxes. The results are analyzed and discussed on the basis of the obtained velocity distribution functions (VDF). This work is supported by the German Research Foundation (DFG) in the frame of the Collaborative Research Centre TRR 87.

  2. Particle Swarm Transport in Fracture Networks

    NASA Astrophysics Data System (ADS)

    Pyrak-Nolte, L. J.; Mackin, T.; Boomsma, E.

    2012-12-01

    Colloidal particles of many types occur in fractures in the subsurface as a result of both natural and industrial processes (e.g., environmental influences, synthetic nano- & micro-particles from consumer products, chemical and mechanical erosion of geologic material, proppants used in gas and oil extraction, etc.). The degree of localization and speed of transport of such particles depends on the transport mechanisms, the chemical and physical properties of the particles and the surrounding rock, and the flow path geometry through the fracture. In this study, we investigated the transport of particle swarms through artificial fracture networks. A synthetic fracture network was created using an Objet Eden 350V 3D printer to build a network of fractures. Each fracture in the network had a rectangular cross-sectional area with a constant depth of 7 mm but with widths that ranged from 2 mm to 11 mm. The overall dimensions of the network were 132 mm by 166 mm. The fracture network had 7 ports that were used either as the inlet or outlet for fluid flow through the sample or for introducing a particle swarm. Water flow rates through the fracture were controlled with a syringe pump, and ranged from zero flow to 6 ml/min. Swarms were composed of a dilute suspension (2% by mass) of 3 μm fluorescent polystyrene beads in water. Swarms with volumes of 5, 10, 20, 30 and 60 μl were used and delivered into the network using a second syringe pump. The swarm behavior was imaged using an optical fluorescent imaging system illuminated by green (525 nm) LED arrays and captured by a CCD camera. For fracture networks with quiescent fluids, particle swarms fell under gravity and remained localized within the network. Large swarms (30-60 μl) were observed to bifurcate at shallower depths resulting in a broader dispersal of the particles than for smaller swarm volumes. For all swarm volumes studied, particle swarms tended to bifurcate at the intersection between fractures. These

  3. Particle transport inferences from density sawteeth

    SciTech Connect

    Chen, J.; Li, Q.; Zhuang, G.; Liao, K.; Gentle, K. W.

    2014-05-15

    Sawtooth oscillations in tokamaks are defined by their effect on electron temperature: a rapid flattening of the core profile followed by an outward heat pulse and a slow core recovery caused by central heating. Recent high-resolution, multi-chord interferometer measurements on JTEXT extend these studies to particle transport. Sawteeth only partially flatten the core density profile, but enhanced particle diffusion on the time scale of the thermal crash occurs over much of the profile, relevant for impurities. Recovery between crashes implies an inward pinch velocity extending to the center.

  4. Solar energetic particle transport in the heliosphere

    NASA Astrophysics Data System (ADS)

    Pei, Chunsheng

    2007-08-01

    The transport of solar energetic particles (SEPs) in the inner heliosphere is a very important issue which can affect our daily life. For example, large SEP events can lead to the failure of power grids, interrupt communications, and may participate in global climate change. The SEPS also can harm humans in space and destroy the instruments on board spacecraft. Studying the transport of SEPs also helps us understand remote regions of space which are not visible to us because there are not enough photons in those places. The interplanetary magnetic field is the medium in which solar energetic particles travel. The Parker Model of the solar wind and its successor, the Weber and Davis model, have been the dominant models of the solar wind and the interplanetary magnetic field since 1960s. In this thesis, I have reviewed these models and applied an important correction to the Weber and Davis model Various solar wind models and their limitations are presented. Different models can affect the calculation of magnetic field direction at 1 AU by as much as about 30%. Analysis of the onset of SEP events could be used to infer the release time of solar energetic particles and to differentiate between models of particle acceleration near the Sun. It is demonstrated that because of the nature of the stochastic heliospheric magnetic field, the path length measured along the line of force can be shorter than that of the nominal Parker spiral. These results help to explain recent observations. A two dimensional model and a fully three dimensional numerical model for the transport of SEPs has been developed based on Parker's transport equation for the first time. ''Reservoir'' phenomenon, which means the inner heliosphere works like a reservoir for SEPs during large SEP events, and multi-spacecraft observation of peak intensities are explained by this numerical model.

  5. Gyrokinetic particle simulation of neoclassical transport

    SciTech Connect

    Lin, Z.; Tang, W.M.; Lee, W.W.

    1995-02-01

    A time varying weighting ({delta} f) scheme for gyrokinetic particle simulation is applied to a steady state, multi-species simulation of neoclassical transport. Accurate collision operators conserving momentum and energy are developed and implemented. Simulation results using these operators are found to agree very well with neoclassical theory. For example, it is dynamically demonstrated in these multispecies simulations that like-particle collisions produce no particle flux and that the neoclassical fluxes are ambipolar for an ion-electron plasma. An important physics feature of the present scheme is the introduction of toroidal sheared flow to the simulations. Simulation results are in agreement with the existing analytical neoclassical theory of Hinton and Wong. The poloidal electric field associated with toroidal mass flow is found to enhance density gradient driven electron particle flux and the bootstrap current while reducing temperature gradient driven flux and current. Finally, neoclassical theory in steep gradient profile relevant to the edge regime is examined by taking into account finite banana width effects. In general, the present work demonstrates a valuable new capability for studying important aspects of neoclassical transport inaccessible by conventional analytical calculation processes.

  6. Gyrokinetic particle simulation of neoclassical transport

    SciTech Connect

    Lin, Z.; Tang, W.M.; Lee, W.W.

    1995-08-01

    A time varying weighting ({delta}{ital f} ) scheme for gyrokinetic particle simulation is applied to a steady-state, multispecies simulation of neoclassical transport. Accurate collision operators conserving momentum and energy are developed and implemented. Simulation results using these operators are found to agree very well with neoclassical theory. For example, it is dynamically demonstrated that like-particle collisions produce no particle flux and that the neoclassical fluxes are ambipolar for an ion--electron plasma. An important physics feature of the present scheme is the introduction of toroidal flow to the simulations. Simulation results are in agreement with the existing analytical neoclassical theory. The poloidal electric field associated with toroidal mass flow is found to enhance density gradient-driven electron particle flux and the bootstrap current while reducing temperature gradient-driven flux and current. Finally, neoclassical theory in steep gradient profile relevant to the edge regime is examined by taking into account finite banana width effects. In general, in the present work a valuable new capability for studying important aspects of neoclassical transport inaccessible by conventional analytical calculation processes is demonstrated. {copyright} {ital 1995} {ital American} {ital Institute} {ital of} {ital Physics}.

  7. Solar energetic particle anisotropies and insights into particle transport

    NASA Astrophysics Data System (ADS)

    Leske, R. A.; Cummings, A. C.; Cohen, C. M. S.; Mewaldt, R. A.; Labrador, A. W.; Stone, E. C.; Wiedenbeck, M. E.; Christian, E. R.; Rosenvinge, T. T. von

    2016-03-01

    As solar energetic particles (SEPs) travel through interplanetary space, their pitch-angle distributions are shaped by the competing effects of magnetic focusing and scattering. Measurements of SEP anisotropies can therefore reveal information about interplanetary conditions such as magnetic field strength, topology, and turbulence levels at remote locations from the observer. Onboard each of the two STEREO spacecraft, the Low Energy Telescope (LET) measures pitch-angle distributions for protons and heavier ions up to iron at energies of about 2-12 MeV/nucleon. Anisotropies observed using LET include bidirectional flows within interplanetary coronal mass ejections, sunward-flowing particles when STEREO was magnetically connected to the back side of a shock, and loss-cone distributions in which particles with large pitch angles underwent magnetic mirroring at an interplanetary field enhancement that was too weak to reflect particles with the smallest pitch angles. Unusual oscillations in the width of a beamed distribution at the onset of the 23 July 2012 SEP event were also observed and remain puzzling. We report LET anisotropy observations at both STEREO spacecraft and discuss their implications for SEP transport, focusing exclusively on the extreme event of 23 July 2012 in which a large variety of anisotropies were present at various times during the event.

  8. Particle Transport through Hydrogels Is Charge Asymmetric

    PubMed Central

    Zhang, Xiaolu; Hansing, Johann; Netz, Roland R.; DeRouchey, Jason E.

    2015-01-01

    Transport processes within biological polymer networks, including mucus and the extracellular matrix, play an important role in the human body, where they serve as a filter for the exchange of molecules and nanoparticles. Such polymer networks are complex and heterogeneous hydrogel environments that regulate diffusive processes through finely tuned particle-network interactions. In this work, we present experimental and theoretical studies to examine the role of electrostatics on the basic mechanisms governing the diffusion of charged probe molecules inside model polymer networks. Translational diffusion coefficients are determined by fluorescence correlation spectroscopy measurements for probe molecules in uncharged as well as cationic and anionic polymer solutions. We show that particle transport in the charged hydrogels is highly asymmetric, with diffusion slowed down much more by electrostatic attraction than by repulsion, and that the filtering capability of the gel is sensitive to the solution ionic strength. Brownian dynamics simulations of a simple model are used to examine key parameters, including interaction strength and interaction range within the model networks. Simulations, which are in quantitative agreement with our experiments, reveal the charge asymmetry to be due to the sticking of particles at the vertices of the oppositely charged polymer networks. PMID:25650921

  9. Transport of Particle Swarms Through Fractures

    NASA Astrophysics Data System (ADS)

    Boomsma, E.; Pyrak-Nolte, L. J.

    2011-12-01

    The transport of engineered micro- and nano-scale particles through fractured rock is often assumed to occur as dispersions or emulsions. Another potential transport mechanism is the release of particle swarms from natural or industrial processes where small liquid drops, containing thousands to millions of colloidal-size particles, are released over time from seepage or leaks. Swarms have higher velocities than any individual colloid because the interactions among the particles maintain the cohesiveness of the swarm as it falls under gravity. Thus particle swarms give rise to the possibility that engineered particles may be transported farther and faster in fractures than predicted by traditional dispersion models. In this study, the effect of fractures on colloidal swarm cohesiveness and evolution was studied as a swarm falls under gravity and interacts with fracture walls. Transparent acrylic was used to fabricate synthetic fracture samples with either (1) a uniform aperture or (2) a converging aperture followed by a uniform aperture (funnel-shaped). The samples consisted of two blocks that measured 100 x 100 x 50 mm. The separation between these blocks determined the aperture (0.5 mm to 50 mm). During experiments, a fracture was fully submerged in water and swarms were released into it. The swarms consisted of dilute suspensions of either 25 micron soda-lime glass beads (2% by mass) or 3 micron polystyrene fluorescent beads (1% by mass) with an initial volume of 5μL. The swarms were illuminated with a green (525 nm) LED array and imaged optically with a CCD camera. In the uniform aperture fracture, the speed of the swarm prior to bifurcation increased with aperture up to a maximum at a fracture width of approximately 10 mm. For apertures greater than ~15 mm, the velocity was essentially constant with fracture width (but less than at 10 mm). This peak suggests that two competing mechanisms affect swarm velocity in fractures. The wall provides both drag, which

  10. High Energy Particle Transport Code System.

    Energy Science and Technology Software Center (ESTSC)

    2003-12-17

    Version 00 NMTC/JAM is an upgraded version of the code CCC-694/NMTC-JAERI97, which was developed in 1982 at JAERI and is based on the CCC-161/NMTC code system. NMTC/JAM simulates high energy nuclear reactions and nuclear meson transport processes. The applicable energy range of NMTC/JAM was extended in principle up to 200 GeV for nucleons and mesons by introducing the high energy nuclear reaction code Jet-Aa Microscopic (JAM) for the intra-nuclear cascade part. For the evaporation andmore » fission process, a new model, GEM, can be used to describe the light nucleus production from the excited residual nucleus. According to the extension of the applicable energy, the nucleon-nucleus non-elastic, elastic and differential elastic cross section data were upgraded. In addition, the particle transport in a magnetic field was implemented for beam transport calculations. Some new tally functions were added, and the format of input and output of data is more user friendly. These new calculation functions and utilities provide a tool to carry out reliable neutronics study of a large scale target system with complex geometry more accurately and easily than with the previous model. It implements an intranuclear cascade model taking account of the in-medium nuclear effects and the preequilibrium calculation model based on the exciton one. For treating the nucleon transport process, the nucleon-nucleus cross sections are revised to those derived by the systematics of Pearlstein. Moreover, the level density parameter derived by Ignatyuk is included as a new option for particle evaporation calculation. A geometry package based on the Combinatorial Geometry with multi-array system and the importance sampling technique is implemented in the code. Tally function is also employed for obtaining such physical quantities as neutron energy spectra, heat deposition and nuclide yield without editing a history file. The code can simulate both the primary spallation reaction and the

  11. Particle transport due to magnetic fluctuations

    SciTech Connect

    Stoneking, M.R.; Hokin, S.A.; Prager, S.C.; Fiksel, G.; Ji, H.; Den Hartog, D.J.

    1994-01-01

    Electron current fluctuations are measured with an electrostatic energy analyzer at the edge of the MST reversed-field pinch plasma. The radial flux of fast electrons (E>T{sub e}) due to parallel streaming along a fluctuating magnetic field is determined locally by measuring the correlated product <{tilde J}{sub e}{tilde B}{sub r}>. Particle transport is small just inside the last closed flux surface ({Gamma}{sub e,mag} < 0.1 {Gamma}{sub e,total}), but can account for all observed particle losses inside r/a=0.8. Electron diffusion is found to increase with parallel velocity, as expected for diffusion in a region of field stochasticity.

  12. Nonambipolar transport by trapped particles in tokamaks.

    PubMed

    Park, Jong-Kyu; Boozer, Allen H; Menard, Jonathan E

    2009-02-13

    Small nonaxisymmetric perturbations of the magnetic field can greatly change the performance of tokamaks through nonambipolar transport. A number of theories have been developed, but the predictions were not consistent with experimental observations in tokamaks. This Letter provides a resolution, with a generalized analytic treatment of the nonambipolar transport. It is shown that the discrepancy between theory and experiment can be greatly reduced by two effects: (1) the small fraction of trapped particles for which the bounce and precession rates resonate; (2) the nonaxisymmetric variation in the field strength along the perturbed magnetic field lines rather than along the unperturbed magnetic field lines. The expected sensitivity of the International Thermonuclear Experimental Reactor to nonaxisymmetries is also discussed. PMID:19257595

  13. Experimental Test of Resonant Particle Transport Theory

    NASA Astrophysics Data System (ADS)

    Eggleston, D. L.

    1999-11-01

    It has long been suggested that the single-particle resonant transport theory developed for tandem mirrors might be able to explain asymmetry-induced transport in Malmberg-Penning traps.(C.F. Driscoll and J.H. Malmberg, Phys. Rev. Lett. 50), 167 (1983). We have recently adapted this theory to non-neutral plasmas(D.L. Eggleston and T.M. O'Neil, Phys. Plasmas 6), 2699 (1999). and are attempting an experimental test under the simplest possible conditions. The experiment(D.L. Eggleston, Phys. Plasmas 4), 1196 (1997). employs forty wall sectors in order to apply an asymmetry consisting of a single Fourier mode: φ1 =φ _nlωexp [ i( fracnπ Lz+lθ -ω t) ] . The electron density is kept low enough to avoid complications due to collective effects (shielding and waves) while the usual azimuthal E× B drift is maintained by a negatively biased central wire. We have confirmed the dominant role played by resonant particlesfootnote D.L. Eggleston, Bull. Am. Phys. Soc. 43, 1805 (1998). and here report on an absolute comparison between experimental and theoretical values for the radial particle flux. Interestingly, our initial results indicate that the experimental flux is forty times smaller than the theoretical value.

  14. PARTICLE TRANSPORT IN YOUNG PULSAR WIND NEBULAE

    SciTech Connect

    Tang Xiaping; Chevalier, Roger A. E-mail: rac5x@virginia.edu

    2012-06-20

    The model for pulsar wind nebulae (PWNe) as a result of the magnetohydrodynamic (MHD) downstream flow from a shocked, relativistic pulsar wind has been successful in reproducing many features of the nebulae observed close to central pulsars. However, observations of well-studied young nebulae like the Crab Nebula, 3C 58, and G21.5-0.9 do not show the toroidal magnetic field on a larger scale that might be expected in the MHD flow model; in addition, the radial variation of spectral index due to synchrotron losses is smoother than expected in the MHD flow model. We find that pure diffusion models can reproduce the basic data on nebular size and spectral index variation for the Crab, 3C 58, and G21.5-0.9. Most of our models use an energy-independent diffusion coefficient; power-law variations of the coefficient with energy are degenerate with variation in the input particle energy distribution index in the steady state, transmitting boundary case. Energy-dependent diffusion is a possible reason for the smaller diffusion coefficient inferred for the Crab. Monte Carlo simulations of the particle transport allowing for advection and diffusion of particles suggest that diffusion dominates over much of the total nebular volume of the Crab. Advection dominates close to the pulsar and is likely to play a role in the X-ray half-light radius. The source of diffusion and mixing of particles is uncertain, but may be related to the Rayleigh-Taylor instability at the outer boundary of a young PWN or to instabilities in the toroidal magnetic field structure.

  15. Modeling pollutant transport using a meshless-lagrangian particle model

    SciTech Connect

    Carrington, D. B.; Pepper, D. W.

    2002-01-01

    A combined meshless-Lagrangian particle transport model is used to predict pollutant transport over irregular terrain. The numerical model for initializing the velocity field is based on a meshless approach utilizing multiquadrics established by Kansa. The Lagrangian particle transport technique uses a random walk procedure to depict the advection and dispersion of pollutants over any type of surface, including street and city canyons

  16. Transport of airborne particles within a room.

    PubMed

    Richmond-Bryant, J; Eisner, A D; Brixey, L A; Wiener, R W

    2006-02-01

    The objective of this study is to test a technique used to analyze contaminant transport in the wake of a bluff body under controlled experimental conditions for application to aerosol transport in a complex furnished room. Specifically, the hypothesis tested by our work is that the dispersion of contaminants in a room is related to the turbulence kinetic energy and length scale. This turbulence is, in turn, determined by the size and shape of furnishings within the room and by the ventilation characteristics. This approach was tested for indoor dispersion through computational fluid dynamics simulations and laboratory experiments. In each, 3 mum aerosols were released in a furnished room with varied contaminant release locations (at the inlet vent or under a desk). The realizable k approximately epsilon model was employed in the simulations, followed by a Lagrangian particle trajectory simulation used as input for an in-house FORTRAN code to compute aerosol concentration. For the experiments, concentrations were measured simultaneously at seven locations by laser photometry, and air velocity was measured using laser Doppler velocimetry. The results suggest that turbulent diffusion is a significant factor in contaminant residence time in a furnished room. This procedure was then expanded to develop a simplified correlation between contaminant residence time and the number of enclosing surfaces around a point containing the contaminant. Practical Implications The work presented here provides a methodology for relating local aerosol residence time to properties of room ventilation and furniture arrangement. This technique may be used to assess probable locations of high concentration by knowing only the particle release location, furniture configuration, inlet and outlet locations, and air speeds, which are all observable features. Applications of this method include development of 'rules of thumb' for first responders entering a room where an agent has been released

  17. Peristaltic particle transport using the Lattice Boltzmann method

    SciTech Connect

    Connington, Kevin William; Kang, Qinjun; Viswanathan, Hari S; Abdel-fattah, Amr; Chen, Shiyi

    2009-01-01

    Peristaltic transport refers to a class of internal fluid flows where the periodic deformation of flexible containing walls elicits a non-negligible fluid motion. It is a mechanism used to transport fluid and immersed solid particles in a tube or channel when it is ineffective or impossible to impose a favorable pressure gradient or desirous to avoid contact between the transported mixture and mechanical moving parts. Peristaltic transport occurs in many physiological situations and has myriad industrial applications. We focus our study on the peristaltic transport of a macroscopic particle in a two-dimensional channel using the lattice Boltzmann method. We systematically investigate the effect of variation of the relevant dimensionless parameters of the system on the particle transport. We find, among other results, a case where an increase in Reynolds number can actually lead to a slight increase in particle transport, and a case where, as the wall deformation increases, the motion of the particle becomes non-negative only. We examine the particle behavior when the system exhibits the peculiar phenomenon of fluid trapping. Under these circumstances, the particle may itself become trapped where it is subsequently transported at the wave speed, which is the maximum possible transport in the absence of a favorable pressure gradient. Finally, we analyze how the particle presence affects stress, pressure, and dissipation in the fluid in hopes of determining preferred working conditions for peristaltic transport of shear-sensitive particles. We find that the levels of shear stress are most hazardous near the throat of the channel. We advise that shear-sensitive particles should be transported under conditions where trapping occurs as the particle is typically situated in a region of innocuous shear stress levels.

  18. The telegraph equation in charged particle transport

    NASA Technical Reports Server (NTRS)

    Gombosi, T. I.; Jokipii, J. R.; Kota, J.; Lorencz, K.; Williams, L. L.

    1993-01-01

    We present a new derivation of the telegraph equation which modifies its coefficients. First, an infinite order partial differential equation is obtained for the velocity space solid angle-averaged phase-space distribution of particles which underwent at least a few collisions. It is shown that, in the lowest order asymptotic expansion, this equation simplifies to the well-known diffusion equation. The second-order asymptotic expansion for isotropic small-angle scattering results in a modified telegraph equation with a signal propagation speed of v(5/11) exp 1/2 instead of the usual v/3 exp 1/2. Our derivation of a modified telegraph equation follows from an expansion of the Boltzmann equation in the relevant smallness parameters and not from a truncation of an eigenfunction expansion. This equation is consistent with causality. It is shown that, under steady state conditions in a convecting plasma, the telegraph equation may be regarded as a diffusion equation with a modified transport coefficient, which describes a combination of diffusion and cosmic-ray inertia.

  19. Transport of active ellipsoidal particles in ratchet potentials

    SciTech Connect

    Ai, Bao-Quan Wu, Jian-Chun

    2014-03-07

    Rectified transport of active ellipsoidal particles is numerically investigated in a two-dimensional asymmetric potential. The out-of-equilibrium condition for the active particle is an intrinsic property, which can break thermodynamical equilibrium and induce the directed transport. It is found that the perfect sphere particle can facilitate the rectification, while the needlelike particle destroys the directed transport. There exist optimized values of the parameters (the self-propelled velocity, the torque acting on the body) at which the average velocity takes its maximal value. For the ellipsoidal particle with not large asymmetric parameter, the average velocity decreases with increasing the rotational diffusion rate, while for the needlelike particle (very large asymmetric parameter), the average velocity is a peaked function of the rotational diffusion rate. By introducing a finite load, particles with different shapes (or different self-propelled velocities) will move to the opposite directions, which is able to separate particles of different shapes (or different self-propelled velocities)

  20. Entropic Ratchet transport of interacting active Brownian particles

    SciTech Connect

    Ai, Bao-Quan; He, Ya-Feng; Zhong, Wei-Rong

    2014-11-21

    Directed transport of interacting active (self-propelled) Brownian particles is numerically investigated in confined geometries (entropic barriers). The self-propelled velocity can break thermodynamical equilibrium and induce the directed transport. It is found that the interaction between active particles can greatly affect the ratchet transport. For attractive particles, on increasing the interaction strength, the average velocity first decreases to its minima, then increases, and finally decreases to zero. For repulsive particles, when the interaction is very weak, there exists a critical interaction at which the average velocity is minimal, nearly tends to zero, however, for the strong interaction, the average velocity is independent of the interaction.

  1. Transport of anisotropic chiral particles in a confined structure

    NASA Astrophysics Data System (ADS)

    Hu, Cai-tian; Ou, Ya-li; Wu, Jian-chun; Ai, Bao-quan

    2016-03-01

    Directed transport of anisotropic chiral particles is numerically investigated in the presence of the regular arrays of rigid half-circle obstacles. It is found that due to the rotational-translational coupling, the transport of anisotropic particles is considerably more complicated compared to the isotropic case. For isotropic chiral particles, the transport direction is completely determined by the chirality of particles. However, for anisotropic chiral particles, the competition between the chirality and the anisotropic degree determines the transport direction. For a given chirality, by suitably tailoring parameters (the anisotropic degree and the self-propulsion speed), particles with different anisotropic degrees (or self-propulsion speed) can move in different directions and can be separated.

  2. Transport and capture of colloidal particles in single fractures

    SciTech Connect

    Bonano, E.J.; Beyeler, W.E.

    1984-01-01

    In this study, the transport and capture rates of colloidal particles were calculated for a parallel-plate channel simulating a single fracture. The steady-state convective diffusion equation was solved with the particle velocity normal to the walls of the channel being the sum of the external forces acting on the particles. The forces considered were the gravitational, London-van der Waals and electric-double layer forces. The effects of parameters governing these forces and particle production mechanism on the rates of particle capture and transport are determined. The dynamic balance between particle production and capture has a significant effect on the concentration of particles leaving the fracture. The average particle velocity, though higher than the average fluid velocity, seems to be insensitive to phenomena governing particle capture. 8 references, 5 figures.

  3. Two Dimensional Particle Transport in the Cct Tokamak Edge Plasma

    NASA Astrophysics Data System (ADS)

    Tynan, George Robert

    The physics of particle transport in the CCT tokamak plasma edge is studied experimentally in this dissertation. A full poloidal array of Langmuir probes is used to measure the equilibrium plasma and transport properties of the CCT edge plasma during Ohmic and H-mode discharges. During Ohmic L-mode, the equilibrium plasma density and electron temperature are found to vary on a magnetic flux surface. The equilibrium plasma distribution coincides with the distribution of particle transport. Inside the last closed flux surface, convective processes dominate particle transport. Several large convective cells are observed near the limiter radius. At and beyond the limiter radius, turbulent transport is significant. The turbulence appears to be driven by the convective plasma flows. In Ohmic L-mode-like discharges, plasma transport occurs predominantly through the low-field region of the tokamak with local bad curvature. The convective cells are destroyed at the L-H transition and replaced with a more poloidally symmetric, radially narrow jet of plasma flow at the limiter radius. The jet effectively isolates the plasma core from the scrape -off layer. The turbulence associated with the convective cells is reduced across the edge region. Radial particle transport across the limiter radius is thus inhibited and the global particle confinement is increased. The available data suggest that the residual H-mode particle transport is more poloidally symmetric.

  4. The effects of realistic pancake solenoids on particle transport

    SciTech Connect

    Gu, X.; Okamura, M.; Pikin, A.; Fischer, W.; Luo, Y.

    2011-02-01

    Solenoids are widely used to transport or focus particle beams. Usually, they are assumed as being ideal solenoids with a high axial-symmetry magnetic field. Using the Vector Field Opera program, we modeled asymmetrical solenoids with realistic geometry defects, caused by finite conductor and current jumpers. Their multipole magnetic components were analyzed with the Fourier fit method; we present some possible optimized methods for them. We also discuss the effects of 'realistic' solenoids on low energy particle transport. The finding in this paper may be applicable to some lower energy particle transport system design.

  5. Transport of Energetic Particles by Microturbulence in Magnetized Plasmas

    SciTech Connect

    Zhang Wenlu; Lin Zhihong; Chen Liu

    2008-08-29

    Transport of energetic particles by the microturbulence in magnetized plasmas is studied in gyrokinetic simulations of the ion temperature gradient turbulence. The probability density function of the ion radial excursion is found to be very close to a Gaussian, indicating a diffusive transport process. The particle diffusivity can thus be calculated from a random walk model. The diffusivity is found to decrease drastically for high energy particles due to the averaging effects of the large gyroradius and orbit width, and the fast decorrelation of the energetic particles with the waves.

  6. Electrokinetic transport of heterogeneous particles in suspensions

    NASA Technical Reports Server (NTRS)

    Anderson, John L.

    1993-01-01

    The focus of research over the past nine months had been on a theory for the electrophoresis of slender particles and on trajectory analysis of colloidal doublets rotating in electric fields. Brief summaries of the research are given.

  7. Moisture Transport in Silica Gel Particle Beds: I. Theoretical Study

    SciTech Connect

    Pesaran, A. A.; Mills, A. F.

    1986-08-01

    Diffusion mechanisms of moisture within silica gel particles are investigated. It is found that for microporous silica gel surface diffusion is the dominant mechanism of moisture transport, while for macroporous silica gel both Knudsen and surface diffusion are important.

  8. Energetic particle transport and acceleration within the interplanetary medium

    NASA Astrophysics Data System (ADS)

    Dalla, Silvia

    2016-07-01

    The propagation through space of energetic particles accelerated at the Sun and in the inner heliosphere is governed by the characteristics of the interplanetary magnetic field. At large scales, the average Parker spiral configuration, on which transient magnetic structures may be superimposed, dominates the transport, while at smaller scales turbulence scatters the particles and produces field line meandering. This talk will review the classical 1D approach to interplanetary transport, mainly applied to Solar Energetic Particles (SEPs), as well as alternative models which allow for effects such as scattering perpendicular to the average magnetic field and field line meandering. The recently emphasized role of drifts in the propagation of SEPs will be discussed. The presentation will also review processes by which particle acceleration takes place within the interplanetary medium and the overall way in which acceleration and transport shape in-situ observations of energetic particles.

  9. Transport and harvesting of suspended particles using modulated ultrasound.

    PubMed

    Whitworth, G; Grundy, M A; Coakley, W T

    1991-11-01

    Polystyrene particles of 9 microns diameter were acoustically concentrated along the axis of a water-filled cylindrical waveguide containing a 3 MHz standing wave field. Modulation of the acoustic field enabled transport of the concentrated particles in the axial direction. Four modulations were investigated: 1, a fixed frequency difference introduced between two transducers; 2, ramping the transducer frequency; 3, tone burst, i.e. sound that is pulsed on and off, allowing intermittent sedimentation under gravity; and 4, switching the sound off to allow continuous sedimentation. The most efficient transport (leaving the fewest particles in suspension) of clumps to one end of the container was achieved with method 1 above. In this system the maximum speed of transport of the axial clumps was 24 mm s-1. A theory developed here for the transport of particles in a pseudo (i.e. slowly moving) standing wave field predicts an upper limit, which increases with particle size, for the speed of an entrained body. For a single 9 microns diameter particle in a field with a spatial peak pressure amplitude of 0.4 MPa this speed would be 0.5 mm s-1. The higher experimental speeds observed here emphasize the value of acoustically concentrating particles into relatively large clumps prior to initiating transport. PMID:1949343

  10. Scalings of energetic particle transport by ion temperature gradient microturbulence

    SciTech Connect

    Zhang Wenlu; Decyk, Viktor; Holod, Ihor; Xiao Yong; Lin Zhihong; Chen Liu

    2010-05-15

    Transport scaling of energetic particles by ion temperature gradient microturbulence in magnetized plasmas is studied in massively paralleled gyrokinetic particle-in-cell simulations. It is found that the diffusivity decreases drastically at high particles energy (E) to plasma temperature (T) ratio because of the averaging effects of the large gyroradius and drift-orbit width, and the fast wave-particle decorrelation. At high energy, the diffusivity follows a (E/T){sup -1} scaling for purely passing particles, a (E/T){sup -2} scaling for deeply trapped particles and a (E/T){sup -1} scaling for particles with an isotropic velocity distribution since the diffusivity therein is contributed mostly by the passing particles.

  11. Efficiency of a statistical transport model for turbulent particle dispersion

    NASA Astrophysics Data System (ADS)

    Litchford, Ron J.; Jeng, San-Mou

    1992-05-01

    In developing its theory for turbulent dispersion transport, the Litchford and Jeng (1991) statistical transport model for turbulent particle dispersion took a generalized approach in which the perturbing influence of each turbulent eddy on consequent interactions was transported through all subsequent eddies. Nevertheless, examinations of this transport relation shows it to be able to decay rapidly: this implies that additional computational efficiency may be obtained via truncation of unneccessary transport terms. Attention is here given to the criterion for truncation, as well as to expected efficiency gains.

  12. Efficiency of a statistical transport model for turbulent particle dispersion

    SciTech Connect

    Litchford, R.J.; Jeng, San-Mou )

    1992-05-01

    In developing its theory for turbulent dispersion transport, the Litchford and Jeng (1991) statistical transport model for turbulent particle dispersion took a generalized approach in which the perturbing influence of each turbulent eddy on consequent interactions was transported through all subsequent eddies. Nevertheless, examinations of this transport relation shows it to be able to decay rapidly: this implies that additional computational efficiency may be obtained via truncation of unneccessary transport terms. Attention is here given to the criterion for truncation, as well as to expected efficiency gains. 2 refs.

  13. Efficiency of a statistical transport model for turbulent particle dispersion

    NASA Technical Reports Server (NTRS)

    Litchford, Ron J.; Jeng, San-Mou

    1992-01-01

    In developing its theory for turbulent dispersion transport, the Litchford and Jeng (1991) statistical transport model for turbulent particle dispersion took a generalized approach in which the perturbing influence of each turbulent eddy on consequent interactions was transported through all subsequent eddies. Nevertheless, examinations of this transport relation shows it to be able to decay rapidly: this implies that additional computational efficiency may be obtained via truncation of unneccessary transport terms. Attention is here given to the criterion for truncation, as well as to expected efficiency gains.

  14. Fluid enhancement of particle transport in nanochannels

    NASA Astrophysics Data System (ADS)

    Li, Zhigang; Drazer, German

    2006-11-01

    We investigate the effect that fluid density has on the mobility of a spherical nanoparticle moving through a cylindrical nanochannel. The solid nanoparticle, the channel wall, and the fluid are described at the molecular level, and we use molecular dynamics simulations to study their behavior. We consider densities ranging from a few fluid molecules to a relatively dense fluid inside the channel. The inhomogeneous distribution of the fluid molecules inside the channel results in the competition of two effects as the fluid density is increased. The fluid molecules adsorb on the channel surface, and thus reduce the friction with the wall and enhance the mobility of the particle. On the other hand, the addition of fluid molecules increases the viscous drag on the particle and thus reduces its mobility. The outcome of these competing effects depends on the strength of the interaction between the atoms in the particle and those in the wall. We examine three different cases, i.e., intermediate, strong, and weak interaction energies. For an intermediate interaction, two distinct peaks are observed in the mobility of the particle as the first two adsorbed fluid layers form. On the other hand, a monotonously increasing mobility is found for a strong interaction energy, and a nearly constant mobility is observed for a weak interaction.

  15. Sandia Computational Engine for Particle Transport for Radiation Effects.

    Energy Science and Technology Software Center (ESTSC)

    2014-09-01

    Version 00 The SCEPTRE code solves the linear Boltzmann transport equation for one-, two- and three-dimensional geometries. SCEPTRE is capable of handling any particle type for which multigroup-Legendre cross sections are available. However, the code is designed primarily to model the transport of photons, electrons, and positrons through matter. For efficiency and flexibility, SCEPTRE contains capability for both the first- and second-order forms of the Boltzmann transport equation.

  16. Parameterization of Submesoscale Particle Transport in the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Haza, A. C.; Ozgokmen, T. M.; Griffa, A.; Poje, A. C.; Hogan, P. J.; Jacobs, G. A.

    2014-12-01

    Submesoscale flows have a significant impact on the transport at their own scales, yet require extensive data sets and numerical computations, making them challenging to approach deterministically. A recent Lagrangian parametrization to correct particle transport at the submesoscales is implemented to an eddy permitting ocean model at 1/25 degree grid for the surface circulation of the Gulf of Mexico. It combines mesoscale transport from the deterministic Lagrangian Coherent Structures (LCS) and statistical Lagrangian subgridscale (LSGS) models over the submesoscale range. Comparison to a 1km submesoscale-permitting ocean model shows a significant improvement of the scale-dependent relative dispersion and particle distribution.

  17. Dissipative particle dynamics model for colloid transport in porous media

    SciTech Connect

    Pan, W.; Tartakovsky, A. M.

    2013-08-01

    We present that the transport of colloidal particles in porous media can be effectively modeled with a new formulation of dissipative particle dynamics, which augments standard DPD with non-central dissipative shear forces between particles while preserving angular momentum. Our previous studies have demonstrated that the new formulation is able to capture accurately the drag forces as well as the drag torques on colloidal particles that result from the hydrodynamic retardation effect. In the present work, we use the new formulation to study the contact efficiency in colloid filtration in saturated porous media. Note that the present model include all transport mechanisms simultaneously, including gravitational sedimentation, interception and Brownian diffusion. Our results of contact efficiency show a good agreement with the predictions of the correlation equation proposed by Tufenkji and EliMelech, which also incorporate all transport mechanisms simultaneously without the additivity assumption.

  18. Colloidal particle transport with simultaneous birth, growth, and capture

    SciTech Connect

    Bonano, E.J.; Beyeler, W.E.

    1985-01-01

    The simultaneous transport, birth, growth, and capture of colloidal particles suspended in a fluid within a parallel-plate channel was investigated. Growth and dispersion along the size axis were treated in the same fashion as convection and diffusion along a space coordinate axis. The capture and transport rates were given in terms of an average Sherwood number and average overall particle velocity relative to the fluid's velocity, respectively. The effects of changes in size dispersivity and fluid velocity on the capture and transport rates were significant. The opposite was the case for changes in the particle growth rate. Under all conditions considered here, the particle front had a higher average velocity than the fluid. 9 refs., 8 figs.

  19. Isotope effects on particle transport in the Compact Helical System

    NASA Astrophysics Data System (ADS)

    Tanaka, K.; Okamura, S.; Minami, T.; Ida, K.; Mikkelsen, D. R.; Osakabe, M.; Yoshimura, Y.; Isobe, M.; Morita, S.; Matsuoka, K.

    2016-05-01

    The hydrogen isotope effects of particle transport were studied in the hydrogen and deuterium dominant plasmas of the Compact Helical System (CHS). Longer decay time of electron density after the turning-off of the gas puffing was observed in the deuterium dominant plasma suggesting that the recycling was higher and/or the particle confinement was better in the deuterium dominant plasma. Density modulation experiments showed the quantitative difference of the particle transport coefficients. Density was scanned from 0.8  ×  1019 m-3 to 4  ×  1019 m-3 under the same magnetic field and almost the same heating power. In the low density regime (line averaged density  <  2.5  ×  1019 m-3), the lower particle diffusivity and the larger inwardly directed core convection velocity was observed in the deuterium dominant plasma, while in the high density regime (line averaged density  >2.5  ×  1019 m-3) no clear difference was observed. This result indicates that the isotope effects of particle transport exist only in the low density regime. Comparison with neoclassical transport coefficients showed that the difference of particle transport is likely to be due to the difference of turbulence driven anomalous transport. Linear character of the ion scale turbulence was studied. The smaller linear growth rate qualitatively agreed with the reduced particle transport in the deuterium dominant plasma of the low density regime.

  20. An Integrated Radiation Transport Particle-in-Cell Method

    NASA Astrophysics Data System (ADS)

    Lee, H. J.; Verboncoeur, J. P.; Smith, H. B.; Parker, G. J.; Birdsall, C. K.

    2000-10-01

    The study of radiation transport is important to understand the basic physics and to calculate the efficiency in a lamp discharge or laser induced plasma. Many models neglect radiation transport effects in evolving the steady state. In this study, we established a basic model to calculate radiation transport, including the effects of nonuniform ground state density and atomic collisions in one dimensional cylindrical and planar geometries. We coupled radiation transport with the self-consistent kinetic particle-in-cell codes, XPDP1 and XPDC1[1]. We treat electrons and ions with a particle-in-cell method, and the neutral ground and excited states with a fluid model to calculate radiation transport and atomic collisions. The steady state result of this model compares well with the solution of Holstein equation[2]. [1] J. P. Verboncoeur, M. V. Alves, V. Vahedi, and C. K. Birdsall, Journal of Computational Physics 104, 321 (1993). [2] T. Holstein, Phys. Rev. 72, 1213 (1947).

  1. Monte Carlo Particle Transport Capability for Inertial Confinement Fusion Applications

    SciTech Connect

    Brantley, P S; Stuart, L M

    2006-11-06

    A time-dependent massively-parallel Monte Carlo particle transport calculational module (ParticleMC) for inertial confinement fusion (ICF) applications is described. The ParticleMC package is designed with the long-term goal of transporting neutrons, charged particles, and gamma rays created during the simulation of ICF targets and surrounding materials, although currently the package treats neutrons and gamma rays. Neutrons created during thermonuclear burn provide a source of neutrons to the ParticleMC package. Other user-defined sources of particles are also available. The module is used within the context of a hydrodynamics client code, and the particle tracking is performed on the same computational mesh as used in the broader simulation. The module uses domain-decomposition and the MPI message passing interface to achieve parallel scaling for large numbers of computational cells. The Doppler effects of bulk hydrodynamic motion and the thermal effects due to the high temperatures encountered in ICF plasmas are directly included in the simulation. Numerical results for a three-dimensional benchmark test problem are presented in 3D XYZ geometry as a verification of the basic transport capability. In the full paper, additional numerical results including a prototype ICF simulation will be presented.

  2. Airflow and Particle Transport in the Human Respiratory System

    NASA Astrophysics Data System (ADS)

    Kleinstreuer, C.; Zhang, Z.

    2010-01-01

    Airflows in the nasal cavities and oral airways are rather complex, possibly featuring a transition to turbulent jet-like flow, recirculating flow, Dean's flow, vortical flows, large pressure drops, prevailing secondary flows, and merging streams in the case of exhalation. Such complex flows propagate subsequently into the tracheobronchial airways. The underlying assumptions for particle transport and deposition are that the aerosols are spherical, noninteracting, and monodisperse and deposit upon contact with the airway surface. Such dilute particle suspensions are typically modeled with the Euler-Lagrange approach for micron particles and in the Euler-Euler framework for nanoparticles. Micron particles deposit nonuniformly with very high concentrations at some local sites (e.g., carinal ridges of large bronchial airways). In contrast, nanomaterial almost coats the airway surfaces, which has implications of detrimental health effects in the case of inhaled toxic nanoparticles. Geometric airway features, as well as histories of airflow fields and particle distributions, may significantly affect particle deposition.

  3. Discrete elements method of neutral particle transport

    SciTech Connect

    Mathews, K.A.

    1983-01-01

    A new discrete elements (L/sub N/) transport method is derived and compared to the discrete ordinates S/sub N/ method, theoretically and by numerical experimentation. The discrete elements method is more accurate than discrete ordinates and strongly ameliorates ray effects for the practical problems studied. The discrete elements method is shown to be more cost effective, in terms of execution time with comparable storage to attain the same accuracy, for a one-dimensional test case using linear characteristic spatial quadrature. In a two-dimensional test case, a vacuum duct in a shield, L/sub N/ is more consistently convergent toward a Monte Carlo benchmark solution than S/sub N/, using step characteristic spatial quadrature. An analysis of the interaction of angular and spatial quadrature in xy-geometry indicates the desirability of using linear characteristic spatial quadrature with the L/sub N/ method.

  4. Particle transport in macropores of undisturbed soil columns

    NASA Astrophysics Data System (ADS)

    Jacobsen, O. H.; Moldrup, P.; Larsen, C.; Konnerup, L.; Petersen, L. W.

    1997-09-01

    Particle-facilitated transport may be an important process in the leaching of contaminants such as pesticides, phosphorus and heavy metals. In this work particle transport in macropores through intact soil columns was quantified. Irrigation intensities corresponding to naturally occurring storm events were used. Intact soil columns (18.3 cm inner diameter, 20 cm length) were sampled at two different depths (2-22 cm and 42-62 cm) from a structured sandy loam. Infiltration experiments, consisting of leaching of naturally occurring particles and infiltration with two types of colloidal suspensions were performed on each column. The active macroporosity was estimated in a dye experiment. A significant transport of particles (especially clay and silt) through macropores was observed at both depths. The total amount of mobilized particles at a certain amount of water outflow was found to be higher at depth 42-62 cm than at depth 2-22 cm, but unaffected by irrigation intensity. The particle size in the effluent was found to decrease over time during both the leaching of naturally occurring particles and during the subsequent leaching of colloids from the infiltration with colloidal suspensions, but seemed to stabilize at a particle size <10 μm. The decreasing particle size may be explained by differences in both the adsorption capacity and in the exposure to hydraulic forces of the different particle sizes and by mechanical entrapment of large particles in the macropores. No significant differences were found between the infiltration of the two different types of colloid suspension, probably due to their relatively small differences in zeta potential and particle size. The mass recovery of the infiltrated colloids was found to be significantly larger at depth 42-62 cm than at depth 2-22 cm, probably due to the larger size of the macropores at depth 42-62 cm. A simple advection-reaction model, which takes two different particle size fractions (< and >10 μm) into account

  5. Controlled particle transport in a plasma chamber with striped electrode

    SciTech Connect

    Jiang Ke; Li Yangfang; Shimizu, T.; Konopka, U.; Thomas, H. M.; Morfill, G. E.

    2009-12-15

    The controlled transport of micrometer size dust particles in a parallel-plate radio frequency discharge has been investigated. The lower stainless steel electrode consisted of 100 independently controllable electrical metal stripes. The voltage signals on these stripes were modulated, causing traveling plasma sheath distortions. Because the particles trapped in local potential wells moved according to the direction of the distortion, the transport velocity could be actively controlled by adjusting frequencies and phase shifts of the applied periodic voltage signals. To investigate the detailed principle of this transport, molecular dynamic simulations was performed to reproduce the observations with the plasma background conditions calculated by separated particle-in-cell simulations for the experimental parameters. The findings will help develop novel technologies for investigating large-scale complex plasma systems and techniques for achieving clean environments in plasma processing reactors.

  6. Incipient Motion and Particle Transport in Gravel - Streams

    NASA Astrophysics Data System (ADS)

    Matin, Habib

    The incipient motion of sediment particles in gravel-bed rivers is a very important process. It represents the difference between bed stability and bed mobility. A field study was conducted in Oak Creek, Oregon to investigate incipient motion of individual particles in gravel-bed streams. Investigation was also made of the incipient motion of individual gravel particles in the armor layer, using painted gravel placed on the bed of the stream and recovered after successive high flows. The effect of gravel particle shape was examined for a wide range of flow conditions to determine its significance on incipient motion. The result of analysis indicates a wide variation in particle shapes present. Incipient motion and general transport were found to be generally independent of particle shape regardless of particle sizes. A sample of bed material may contain a mixture of shapes such as well-rounded, oval, flat, disc-like, pencil-shaped, angular, and block-like. These are not likely to move in identical manners during transport nor to start motion at the same flow condition. This leads to questions about the role of shape in predicting incipient motion and equal mobility in gravel-bed streams. The study suggests that gravel particles initiate motion in a manner that is independent of particle shape. One explanation may be that for a natural bed surface many particles rest in orientations that give them the best protection against disturbance, probably a result of their coming to rest gradually during a period of decreasing flows, rather than being randomly dumped. But even when tracer particles were placed randomly in the bed surface there was no evident selectively for initiation of motion on the basis of particle shape. It can be concluded from analysis based on the methods of Parker et al. and Komar that there is room for both equal mobility and flow-competence evaluations. However, the equal mobility concept is best applied for conditions near incipient motion and

  7. Optimization of magnetic switches for single particle and cell transport

    NASA Astrophysics Data System (ADS)

    Abedini-Nassab, Roozbeh; Murdoch, David M.; Kim, CheolGi; Yellen, Benjamin B.

    2014-06-01

    The ability to manipulate an ensemble of single particles and cells is a key aim of lab-on-a-chip research; however, the control mechanisms must be optimized for minimal power consumption to enable future large-scale implementation. Recently, we demonstrated a matter transport platform, which uses overlaid patterns of magnetic films and metallic current lines to control magnetic particles and magnetic-nanoparticle-labeled cells; however, we have made no prior attempts to optimize the device geometry and power consumption. Here, we provide an optimization analysis of particle-switching devices based on stochastic variation in the particle's size and magnetic content. These results are immediately applicable to the design of robust, multiplexed platforms capable of transporting, sorting, and storing single cells in large arrays with low power and high efficiency.

  8. Optimization of magnetic switches for single particle and cell transport

    SciTech Connect

    Abedini-Nassab, Roozbeh; Yellen, Benjamin B.; Murdoch, David M.; Kim, CheolGi

    2014-06-28

    The ability to manipulate an ensemble of single particles and cells is a key aim of lab-on-a-chip research; however, the control mechanisms must be optimized for minimal power consumption to enable future large-scale implementation. Recently, we demonstrated a matter transport platform, which uses overlaid patterns of magnetic films and metallic current lines to control magnetic particles and magnetic-nanoparticle-labeled cells; however, we have made no prior attempts to optimize the device geometry and power consumption. Here, we provide an optimization analysis of particle-switching devices based on stochastic variation in the particle's size and magnetic content. These results are immediately applicable to the design of robust, multiplexed platforms capable of transporting, sorting, and storing single cells in large arrays with low power and high efficiency.

  9. Transport of Fusion Alpha Particles in ITER Scenarios

    NASA Astrophysics Data System (ADS)

    Bass, E. M.; Waltz, R. E.

    2014-10-01

    We predict the fusion-born alpha particle density in steady-state and hybrid (reverse shear) ITER scenarios with an integrated 1D transport model. The model combines ``stiff'' critical gradient alpha-driven Alfvén eigenmode (AE) transport with a quasilinear approximation of microturbulent transport. In an ITER baseline case, AE transport is found to redistribute alphas within the core but not propagate to the loss boundary. The remaining microturbulence at the edge causes negligible alpha-channel energy flux there (neglecting ripple loss). We set the AE stiff transport critical gradient threshold at gAE =gITG , below which microturbulence can nonlinearly suppress AE transport, and the more stringent condition gAE = 0 . Work supported in part by the US DOE under GA-Grant No. DE-FG02-95ER54309 and SciDAC-GSEP Grant No DE-FC02-08ER54977.

  10. Transport and diffusion of overdamped Brownian particles in random potentials

    NASA Astrophysics Data System (ADS)

    Simon, Marc Suñé; Sancho, J. M.; Lindenberg, Katja

    2013-12-01

    We present a numerical study of the anomalies in transport and diffusion of overdamped Brownian particles in totally disordered potential landscapes in one and in two dimensions. We characterize and analyze the effects of three different disordered potentials. The anomalous regimes are characterized by the time exponents that exhibit the statistical moments of the ensemble of particle trajectories. The anomaly in the transport is always of the subtransport type, but diffusion presents a greater variety of anomalies: Both subdiffusion and superdiffusion are possible. In two dimensions we present a mixed anomaly: subdiffusion in the direction perpendicular to the force and superdiffusion in the parallel direction.

  11. Particle Tracking Model and Abstraction of Transport Processes

    SciTech Connect

    B. Robinson

    2000-04-07

    The purpose of the transport methodology and component analysis is to provide the numerical methods for simulating radionuclide transport and model setup for transport in the unsaturated zone (UZ) site-scale model. The particle-tracking method of simulating radionuclide transport is incorporated into the FEHM computer code and the resulting changes in the FEHM code are to be submitted to the software configuration management system. This Analysis and Model Report (AMR) outlines the assumptions, design, and testing of a model for calculating radionuclide transport in the unsaturated zone at Yucca Mountain. In addition, methods for determining colloid-facilitated transport parameters are outlined for use in the Total System Performance Assessment (TSPA) analyses. Concurrently, process-level flow model calculations are being carrier out in a PMR for the unsaturated zone. The computer code TOUGH2 is being used to generate three-dimensional, dual-permeability flow fields, that are supplied to the Performance Assessment group for subsequent transport simulations. These flow fields are converted to input files compatible with the FEHM code, which for this application simulates radionuclide transport using the particle-tracking algorithm outlined in this AMR. Therefore, this AMR establishes the numerical method and demonstrates the use of the model, but the specific breakthrough curves presented do not necessarily represent the behavior of the Yucca Mountain unsaturated zone.

  12. Recent advances in the Mercury Monte Carlo particle transport code

    SciTech Connect

    Brantley, P. S.; Dawson, S. A.; McKinley, M. S.; O'Brien, M. J.; Stevens, D. E.; Beck, B. R.; Jurgenson, E. D.; Ebbers, C. A.; Hall, J. M.

    2013-07-01

    We review recent physics and computational science advances in the Mercury Monte Carlo particle transport code under development at Lawrence Livermore National Laboratory. We describe recent efforts to enable a nuclear resonance fluorescence capability in the Mercury photon transport. We also describe recent work to implement a probability of extinction capability into Mercury. We review the results of current parallel scaling and threading efforts that enable the code to run on millions of MPI processes. (authors)

  13. Experimental investigation of suspended particles transport through porous media: particle and grain size effect.

    PubMed

    Liu, Quansheng; Cui, Xianze; Zhang, Chengyuan; Huang, Shibing

    2016-01-01

    Particle and grain size may influence the transportation and deposition characteristics of particles within pollutant transport and within granular filters that are typically used in wastewater treatment. We conducted two-dimensional sandbox experiments using quartz powder as the particles and quartz sand as the porous medium to study the response of transportation and deposition formation to changes in particle diameter (ds, with median diameter 18, 41, and 82 μm) and grain diameter (dp, with median diameter 0.36, 1.25, and 2.82 mm) considering a wide range of diameter ratios (ds/dp) from 0.0064 to 0.228. Particles were suspended in deionized water, and quartz sand was used as the porous medium, which was meticulously cleaned to minimize any physicochemical and impurities effects that could result in indeterminate results. After the experiments, the particle concentration of the effluent and particle mass per gram of dry sands were measured to explore changes in transportation and deposition characteristics under different conditions. In addition, a micro-analysis was conducted to better analyse the results on a mesoscopic scale. The experimental observation analyses indicate that different diameter ratios (ds/dp) may lead to different deposit formations. As ds/dp increased, the deposit formation changed from 'Random Deposition Type' to 'Gradient Deposition Type', and eventually became 'Inlet Deposition Type'. PMID:26323505

  14. Transport and diffusion of underdamped Brownian particles in random potentials

    NASA Astrophysics Data System (ADS)

    Suñé Simon, Marc; Sancho, J. M.; Lindenberg, Katja

    2014-09-01

    We present numerical results for the transport and diffusion of underdamped Brownian particles in one-dimensional disordered potentials. We compare the anomalies observed with those found in the overdamped regime and with results for a periodic potential. We relate these anomalies to the time dependent probability distributions for the position and velocity of the particles. The anomalies are caused by the random character of the barrier crossing events between locked and running states which is manifested in the spatial distributions. The role of the velocities is small because the particles quickly thermalize into locked or running states.

  15. 950809 Charged particle transport updated multi-group diffusion

    SciTech Connect

    Corman, E.G.; Perkins, S.T.; Dairiki, N.T.

    1995-09-01

    In 1974, a charged particle transport scheme was introduced which utilized a multi-group diffusion method for the spatial transport and slowing down of energetic ions in a hot plasma. In this treatment a diffusion coefficient was used which was flux-limited to provide, hopefully, some degree of accuracy when the slowing down of an energetic charged particle is dominated by Coulomb collisions with thermal ions and electrons in a plasma medium. An advantage of this method was a very fast, memory-contained program for calculating the behavior of energetic charged particles which resulted in smoothly varying particle number densities and energy depositions. The main limitation of the original multi-group charged particle diffusion scheme is its constraint to a basic ten group structure; the same ten group structure for each of the five energetic ions tracked. This is regarded as a severe limitation, inasmuch as more groups would be desired to simulate more accurately the corresponding Monte Carlo results of energies deposited over spatial zones from a charged particle source. More generally, it seems preferable to have a different group structure for each particle type since they are created at inherently different energies. In this paper, the basic theory and multi-group description will be given. This is followed by the specific techniques that were used to solve the resultant equations. Finally, the modifications that were made to the cross section data as well as the methods used for energy and momentum deposition are described.

  16. [alpha]-particle transport-driven current in tokamaks

    SciTech Connect

    Heikkinen, J.A. ); Sipilae, S.K. )

    1995-03-01

    It is shown that the radial transport of fusion-born energetic [alpha] particles, induced by electrostatic waves traveling in one poloidal direction, is directly connected to a net momentum of [alpha] particles in the toroidal direction in tokamaks. Because the momentum change is almost independent of toroidal velocity, the energy required for the momentum generation remains small on an [alpha]-particle population sustained by an isotropic time-independent source. By numerical toroidal Monte Carlo calculations it is shown that the current carried by [alpha] particles in the presence of intense well penetrated waves can reach several mega-amperes in reactor-sized tokamaks. The current obtained can greatly exceed the neoclassical bootstrap current of the [alpha] particles.

  17. Estimates of Lagrangian particle transport by wave groups: forward transport by Stokes drift and backward transport by the return flow

    NASA Astrophysics Data System (ADS)

    van den Bremer, Ton S.; Taylor, Paul H.

    2014-11-01

    Although the literature has examined Stokes drift, the net Lagrangian transport by particles due to of surface gravity waves, in great detail, the motion of fluid particles transported by surface gravity wave groups has received considerably less attention. In practice nevertheless, the wave field on the open sea often has a group-like structure. The motion of particles is different, as particles at sufficient depth are transported backwards by the Eulerian return current that was first described by Longuet-Higgins & Stewart (1962) and forms an inseparable counterpart of Stokes drift for wave groups ensuring the (irrotational) mass balance holds. We use WKB theory to study the variation of the Lagrangian transport by the return current with depth distinguishing two-dimensional seas, three-dimensional seas, infinite depth and finite depth. We then provide dimensional estimates of the net horizontal Lagrangian transport by the Stokes drift on the one hand and the return flow on the other hand for realistic sea states in all four cases. Finally we propose a simple scaling relationship for the transition depth: the depth above which Lagrangian particles are transported forwards by the Stokes drift and below which such particles are transported backwards by the return current.

  18. MATHEMATICAL ANALYSIS OF PARTICLE TRANSPORT AND DEPOSITION IN HUMAN LUNGS

    EPA Science Inventory

    MATHEMATICAL ANALYSIS OF PARTICLE TRANSPORT AND DEPOSITION IN HUMAN LUNGS. Jung-il Choi*, Center for Environmental Medicine, University of North Carolina, Chapel Hill, NC 27599; C. S. Kim, USEPA National Health and Environmental Effects Research Lab. RTP, NC 27711

    Partic...

  19. Probing cytoskeleton dynamics by intracellular particle transport analysis

    NASA Astrophysics Data System (ADS)

    Götz, M.; Hodeck, K. F.; Witzel, P.; Nandi, A.; Lindner, B.; Heinrich, D.

    2015-07-01

    All cellular functions arise from the transport of molecules through a heterogeneous, highly dynamic cell interior for intracellular signaling. Here, the impact of intracellular architecture and cytoskeleton dynamics on transport processes is revealed by high-resolution single particle tracking within living cells, in combination with time-resolved local mean squared displacement (I-MSD) analysis. We apply the I-MSD analysis to trajectories of 200 nm silica particles within living cells of Dictyostelium discoideum obtained by high resolution spinning disc confocal microscopy with a frame rate of 100 fps and imaging in one fixed focal plane. We investigate phases of motor-driven active transport and subdiffusion, normal diffusion, as well as superdiffusion with high spatial and temporal resolution. Active directed intracellular motion is attributed to microtubule associated molecular motor driven transport with average absolute velocities of 2.8 μm s-1 for 200 nm diameter particles. Diffusion processes of these particles within wild-type cells are found to exhibit diffusion constants ranging across two orders of magnitude from subdiffusive to superdiffusive behavior. This type of analysis might prove of ample importance for medical applications, like targeted drug treatment of cells by nano-sized carriers or innovative diagnostic assays.

  20. Linear kinetic theory and particle transport in stochastic mixtures

    SciTech Connect

    Pomraning, G.C.

    1995-12-31

    We consider the formulation of linear transport and kinetic theory describing energy and particle flow in a random mixture of two or more immiscible materials. Following an introduction, we summarize early and fundamental work in this area, and we conclude with a brief discussion of recent results.

  1. The Effect of Particle Density on Aeolian Transport

    NASA Technical Reports Server (NTRS)

    Williams, S. H.; Greeley, R.

    1985-01-01

    A set of experiments using a wide range of particle densities was performed in an open-circuit, terrestrial-atmospheric-pressure wind tunnel at Arizona State University. The results show that saltation flux equations derived for typical geologic material overpredict the flux of low-density particles. Walnut shells (approximately 1.1 g/cc) were used in the experiment and correspond to volcanic ash or ice. Less mass is transported by the wind in the case of low particle density because the style of transport is different. There is a direct, counter-intuitive relationship between particle density and transport height. Measurements of the vertical distribution of material show that the low-density walnut shells travel in a zone within 10 cm of the surface while high-density (approximately 4.5 g/cc) chromite particles travel as 50 cm. Furthermore, the overall saltation rate of the chromite is approximately four times greater than the walnut shells at the same freestream wind speed, even though the wind is much further above threshold for the walnut shells.

  2. Transport of biochar particles in saturated granular media: effects of pyrolysis temperature and particle size.

    PubMed

    Wang, Dengjun; Zhang, Wei; Hao, Xiuzhen; Zhou, Dongmei

    2013-01-15

    Land application of biochar is increasingly being considered for potential agronomic and environmental benefits, e.g., enhancing carbon sequestration, nutrient retention, water holding capacity, and crop productivity; and reducing greenhouse gas emissions and bioavailability of environmental contaminants. However, little is known about the transport of biochar particles in the aqueous environment, which represents a critical knowledge gap because biochar particles can facilitate the transport of adsorbed contaminants. In this study, column experiments were conducted to investigate biochar particle transport and retention in water-saturated quartz sand. Specific factors considered included biochar feedstocks (wheat straw and pine needle), pyrolysis temperature (350 and 550 °C), and particle size (micrometer-particle (MP) and nanoparticle (NP)). Greater mobility was observed for the biochars of lower pyrolysis temperatures and smaller particle sizes. Extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) calculations that considered measured zeta potentials and Lewis acid-base interactions were used to better understand the influence of pyrolysis temperature on biochars particle transport. Most biochars exhibited attractive acid-base interactions that impeded their transport, whereas the biochar with the greatest mobility had repulsive acid-base interaction. Nonetheless, greater retention of the MPs than that of the NPs was in contrast with the XDLVO predictions. Straining and biochar surface charge heterogeneity were found to enhance the retention of biochar MPs, but played an insignificant role in the biochar NP retention. Experimental breakthrough curves and retention profiles were well-described using a two-site kinetic retention model that accounted for depth-dependent retention at one site. Modeled first-order retention coefficients on both sites 1 and 2 increased with increasing pyrolysis temperature and particle size. PMID:23249307

  3. Experiments on Particle Sorting and Partial Bed-load Transport

    NASA Astrophysics Data System (ADS)

    Chen, D.; Sun, H.; Zhang, Y.; Chen, L.

    2014-12-01

    This study explore the complex dynamics of partial bed-load transport in a series of well-controlled laboratory experiments. Observations show that moving particles may experience bimodal transport (i.e., coexistence of long trapping time and large jump length) related to bed coarsening and the formation of clusters on a heterogeneous gravel-bed, which is distinguished from the traditional theory of hiding-exposing interactions among mixed-size particles. A fractional derivative model is finally applied to characterize the overall behavior of partial bed-load transport, including the coexistence of the sub-diffusion and non-local feature caused by turbulence and the micro-relief within an armor layer.

  4. Origin and transport of high energy particles in the galaxy

    NASA Technical Reports Server (NTRS)

    Wefel, John P.

    1987-01-01

    The origin, confinement, and transport of cosmic ray nuclei in the galaxy was studied. The work involves interpretations of the existing cosmic ray physics database derived from both balloon and satellite measurements, combined with an effort directed towards defining the next generation of instruments for the study of cosmic radiation. The shape and the energy dependence of the cosmic ray pathlength distribution in the galaxy was studied, demonstrating that the leaky box model is not a good representation of the detailed particle transport over the energy range covered by the database. Alternative confinement methods were investigated, analyzing the confinement lifetime in these models based upon the available data for radioactive secondary isotopes. The source abundances of several isotopes were studied using compiled nuclear physics data and the detailed transport calculations. The effects of distributed particle acceleration on the secondary to primary ratios were investigated.

  5. Applying dispersive changes to Lagrangian particles in groundwater transport models

    USGS Publications Warehouse

    Konikow, Leonard F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative.

  6. Applying Dispersive Changes to Lagrangian Particles in Groundwater Transport Models

    USGS Publications Warehouse

    Konikow, L.F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative. ?? US Government 2010.

  7. Measurements of Bed Load Particle Diffusion at Low Transport Rates

    NASA Astrophysics Data System (ADS)

    Ball, A. E.; Furbish, D. J.; Schmeeckle, M. W.

    2012-12-01

    High-speed imaging of coarse sand particles transported as bed load reveals how particle motions possess intrinsic periodicities associated with their start-and-stop behavior. The dominant harmonics in these motions have a primary influence on the rate at which the mean squared particle displacement R(τ) increases with the time interval τ. The mean squared displacement R(τ) is conventionally used to assess the possibility of anomalous diffusion, and over a timescale corresponding to the typical travel time of particles, calculations of R(τ) may ostensibly indicate non-Fickian behavior while actually reflecting the effects of periodicities in particle motions, not anomalous diffusion. We provide the theoretical basis for this observed behavior, and we illustrate how the effective (Fickian) particle diffusivity obtains from G. I. Taylor's classic definition involving the particle velocity autocovariance, including its relation to the ensemble-averaged particle velocity as articulated by O. M. Phillips. Cross-stream diffusivities are an order of magnitude smaller than streamwise diffusivities.

  8. Modeling reactive transport with particle tracking and kernel estimators

    NASA Astrophysics Data System (ADS)

    Rahbaralam, Maryam; Fernandez-Garcia, Daniel; Sanchez-Vila, Xavier

    2015-04-01

    Groundwater reactive transport models are useful to assess and quantify the fate and transport of contaminants in subsurface media and are an essential tool for the analysis of coupled physical, chemical, and biological processes in Earth Systems. Particle Tracking Method (PTM) provides a computationally efficient and adaptable approach to solve the solute transport partial differential equation. On a molecular level, chemical reactions are the result of collisions, combinations, and/or decay of different species. For a well-mixed system, the chem- ical reactions are controlled by the classical thermodynamic rate coefficient. Each of these actions occurs with some probability that is a function of solute concentrations. PTM is based on considering that each particle actually represents a group of molecules. To properly simulate this system, an infinite number of particles is required, which is computationally unfeasible. On the other hand, a finite number of particles lead to a poor-mixed system which is limited by diffusion. Recent works have used this effect to actually model incomplete mix- ing in naturally occurring porous media. In this work, we demonstrate that this effect in most cases should be attributed to a defficient estimation of the concentrations and not to the occurrence of true incomplete mixing processes in porous media. To illustrate this, we show that a Kernel Density Estimation (KDE) of the concentrations can approach the well-mixed solution with a limited number of particles. KDEs provide weighting functions of each particle mass that expands its region of influence, hence providing a wider region for chemical reactions with time. Simulation results show that KDEs are powerful tools to improve state-of-the-art simulations of chemical reactions and indicates that incomplete mixing in diluted systems should be modeled based on alternative conceptual models and not on a limited number of particles.

  9. Transport of particle-laden viscoelastic suspensions: tuning particle behavior with elasticity and geometry

    NASA Astrophysics Data System (ADS)

    Barbati, Alexander; Robisson, Agathe; Dussan, Elizabeth; McKinley, Gareth

    2015-11-01

    The transport of particle-laden viscoelastic suspensions is routine in several industrial and natural systems. Many applications, such as hydraulic fracturing in the oilfield, require the successive (and occasionally simultaneous) flow and placement or rigid particles, commonly known as proppant. Hydraulically-generated fractures are routinely less than 6 particle diameters in width. We investigate the flow of viscoelastic particle-laden suspensions in microfabricated geometries mimicking hydraulically-generated fractures under a variety of dynamic conditions to illustrate the interaction between inertia, elasticity, and geometry on particle behavior during flow. We characterize the flow in these model geometries with a combination of streakline imaging, particle image velocimetry, and direct imaging of model proppant particles embedded in the flow. We accompany these small-scale measurements with macro-scale interrogation of fluid rheology by measuring material functions of the working fluid in under shear and extension. These material functions are used in concert with imposed flow conditions and imaging results to identify dominant transport mechanisms on the channel and particle scale, which indicate overall system behavior.

  10. Transport of sputtered particles in capacitive sputter sources

    NASA Astrophysics Data System (ADS)

    Trieschmann, Jan; Mussenbrock, Thomas

    2015-07-01

    The transport of sputtered aluminum inside a multi frequency capacitively coupled plasma chamber is simulated by means of a kinetic test multi-particle approach. A novel consistent set of scattering parameters obtained for a modified variable hard sphere collision model is presented for both argon and aluminum. An angular dependent Thompson energy distribution is fitted to results from Monte Carlo simulations and used for the kinetic simulation of the transport of sputtered aluminum. For the proposed configuration, the transport of sputtered particles is characterized under typical process conditions at a gas pressure of p = 0.5 Pa. It is found that—due to the peculiar geometric conditions—the transport can be understood in a one dimensional picture, governed by the interaction of the imposed and backscattered particle fluxes. It is shown that the precise geometric features play an important role only in proximity to the electrode edges, where the effect of backscattering from the outside chamber volume becomes the governing mechanism.

  11. Full f gyrokinetic method for particle simulation of tokamak transport

    SciTech Connect

    Heikkinen, J.A. Janhunen, S.J.; Kiviniemi, T.P.; Ogando, F.

    2008-05-10

    A gyrokinetic particle-in-cell approach with direct implicit construction of the coefficient matrix of the Poisson equation from ion polarization and electron parallel nonlinearity is described and applied in global electrostatic toroidal plasma transport simulations. The method is applicable for calculation of the evolution of particle distribution function f including as special cases strong plasma pressure profile evolution by transport and formation of neoclassical flows. This is made feasible by full f formulation and by recording the charge density changes due to the ion polarization drift and electron acceleration along the local magnetic field while particles are advanced. The code has been validated against the linear predictions of the unstable ion temperature gradient mode growth rates and frequencies. Convergence and saturation in both turbulent and neoclassical limit of the ion heat conductivity is obtained with numerical noise well suppressed by a sufficiently large number of simulation particles. A first global full f validation of the neoclassical radial electric field in the presence of turbulence for a heated collisional tokamak plasma is obtained. At high Mach number (M{sub p}{approx}1) of the poloidal flow, the radial electric field is significantly enhanced over the standard neoclassical prediction. The neoclassical radial electric field together with the related GAM oscillations is found to regulate the turbulent heat and particle diffusion levels particularly strongly in a large aspect ratio tokamak at low plasma current.

  12. Quantum interference effects in particle transport through square lattices.

    PubMed

    Cuansing, E; Nakanishi, H

    2004-12-01

    We study the transport of a quantum particle through square lattices of various sizes by employing the tight-binding Hamiltonian from quantum percolation. Input and output semi-infinite chains are attached to the lattice either by diagonal point-to-point contacts or by a busbar connection. We find resonant transmission and reflection occurring whenever the incident particle's energy is near an eigenvalue of the lattice alone (i.e., the lattice without the chains attached). We also find the transmission to be strongly dependent on the way the chains are attached to the lattice. PMID:15697469

  13. Particle acceleration, transport and turbulence in cosmic and heliospheric physics

    NASA Technical Reports Server (NTRS)

    Matthaeus, W.

    1992-01-01

    In this progress report, the long term goals, recent scientific progress, and organizational activities are described. The scientific focus of this annual report is in three areas: first, the physics of particle acceleration and transport, including heliospheric modulation and transport, shock acceleration and galactic propagation and reacceleration of cosmic rays; second, the development of theories of the interaction of turbulence and large scale plasma and magnetic field structures, as in winds and shocks; third, the elucidation of the nature of magnetohydrodynamic turbulence processes and the role such turbulence processes might play in heliospheric, galactic, cosmic ray physics, and other space physics applications.

  14. Dust particle diffusion in ion beam transport region.

    PubMed

    Miyamoto, N; Okajima, Y; Romero, C F; Kuwata, Y; Kasuya, T; Wada, M

    2016-02-01

    Dust particles of μm size produced by a monoplasmatron ion source are observed by a laser light scattering. The scattered light signal from an incident laser at 532 nm wavelength indicates when and where a particle passes through the ion beam transport region. As the result, dusts with the size more than 10 μm are found to be distributed in the center of the ion beam, while dusts with the size less than 10 μm size are distributed along the edge of the ion beam. Floating potential and electron temperature at beam transport region are measured by an electrostatic probe. This observation can be explained by a charge up model of the dust in the plasma boundary region. PMID:26932116

  15. Dust particle diffusion in ion beam transport region

    NASA Astrophysics Data System (ADS)

    Miyamoto, N.; Okajima, Y.; Romero, C. F.; Kuwata, Y.; Kasuya, T.; Wada, M.

    2016-02-01

    Dust particles of μm size produced by a monoplasmatron ion source are observed by a laser light scattering. The scattered light signal from an incident laser at 532 nm wavelength indicates when and where a particle passes through the ion beam transport region. As the result, dusts with the size more than 10 μm are found to be distributed in the center of the ion beam, while dusts with the size less than 10 μm size are distributed along the edge of the ion beam. Floating potential and electron temperature at beam transport region are measured by an electrostatic probe. This observation can be explained by a charge up model of the dust in the plasma boundary region.

  16. Code System to Calculate Particle Penetration Through Aerosol Transport Lines.

    Energy Science and Technology Software Center (ESTSC)

    1999-07-14

    Version 00 Distribution is restricted to US Government Agencies and Their Contractors Only. DEPOSITION1.03 is an interactive software program which was developed for the design and analysis of aerosol transport lines. Models are presented for calculating aerosol particle penetration through straight tubes of arbitrary orientation, inlets, and elbows. An expression to calculate effective depositional velocities of particles on tube walls is derived. The concept of maximum penetration is introduced, which is the maximum possible penetrationmore » through a sampling line connecting any two points in a three-dimensional space. A procedure to predict optimum tube diameter for an existing transport line is developed. Note that there is a discrepancy in this package which includes the DEPOSITION 1.03 executable and the DEPOSITION 2.0 report. RSICC was unable to obtain other executables or reports.« less

  17. Gyrokinetics Simulation of Energetic Particle Turbulence and Transport

    SciTech Connect

    Diamond, Patrick H.

    2011-09-21

    Progress in research during this year elucidated the physics of precession resonance and its interaction with radial scattering to form phase space density granulations. Momentum theorems for drift wave-zonal flow systems involving precession resonance were derived. These are directly generalizable to energetic particle modes. A novel nonlinear, subcritical growth mechanism was identified, which has now been verified by simulation. These results strengthen the foundation of our understanding of transport in burning plasmas

  18. Chemically generated convective transport of micron sized particles

    NASA Astrophysics Data System (ADS)

    Shklyaev, Oleg; Das, Sambeeta; Altemose, Alicia; Shum, Henry; Balazs, Anna; Sen, Ayusman

    2015-11-01

    A variety of chemical and biological applications require manipulation of micron sized objects like cells, viruses, and large molecules. Increasing the size of particles up to a micron reduces performance of techniques based on diffusive transport. Directional transport of cargo toward detecting elements reduces the delivery time and improves performance of sensing devices. We demonstrate how chemical reactions can be used to organize fluid flows carrying particles toward the assigned destinations. Convection is driven by density variations caused by a chemical reaction occurring at a catalyst or enzyme-covered target site. If the reaction causes a reduction in fluid density, as in the case of catalytic decomposition of hydrogen peroxide, then fluid and suspended cargo is drawn toward the target along the bottom surface. The intensity of the fluid flow and the time of cargo delivery are controlled by the amount of reagent in the system. After the reagent has been consumed, the fluid pump stops and particles are found aggregated on and around the enzyme-coated patch. The pumps are reusable, being reactivated upon injection of additional reagent. The developed technique can be implemented in lab-on-a-chip devices for transportation of micro-scale object immersed in solution.

  19. Particle Tracking Model and Abstraction of Transport Processes

    SciTech Connect

    B. Robinson

    2004-10-21

    The purpose of this report is to document the abstraction model being used in total system performance assessment (TSPA) model calculations for radionuclide transport in the unsaturated zone (UZ). The UZ transport abstraction model uses the particle-tracking method that is incorporated into the finite element heat and mass model (FEHM) computer code (Zyvoloski et al. 1997 [DIRS 100615]) to simulate radionuclide transport in the UZ. This report outlines the assumptions, design, and testing of a model for calculating radionuclide transport in the UZ at Yucca Mountain. In addition, methods for determining and inputting transport parameters are outlined for use in the TSPA for license application (LA) analyses. Process-level transport model calculations are documented in another report for the UZ (BSC 2004 [DIRS 164500]). Three-dimensional, dual-permeability flow fields generated to characterize UZ flow (documented by BSC 2004 [DIRS 169861]; DTN: LB03023DSSCP9I.001 [DIRS 163044]) are converted to make them compatible with the FEHM code for use in this abstraction model. This report establishes the numerical method and demonstrates the use of the model that is intended to represent UZ transport in the TSPA-LA. Capability of the UZ barrier for retarding the transport is demonstrated in this report, and by the underlying process model (BSC 2004 [DIRS 164500]). The technical scope, content, and management of this report are described in the planning document ''Technical Work Plan for: Unsaturated Zone Transport Model Report Integration'' (BSC 2004 [DIRS 171282]). Deviations from the technical work plan (TWP) are noted within the text of this report, as appropriate. The latest version of this document is being prepared principally to correct parameter values found to be in error due to transcription errors, changes in source data that were not captured in the report, calculation errors, and errors in interpretation of source data.

  20. Quasilinear Line Broadened Model for Energetic Particle Transport

    NASA Astrophysics Data System (ADS)

    Ghantous, Katy; Gorelenkov, Nikolai; Berk, Herbert

    2011-10-01

    We present a self-consistent quasi-linear model that describes wave-particle interaction in toroidal geometry and computes fast ion transport during TAE mode evolution. The model bridges the gap between single mode resonances, where it predicts the analytically expected saturation levels, and the case of multiple modes overlapping, where particles diffuse across phase space. Results are presented in the large aspect ratio limit where analytic expressions are used for Fourier harmonics of the power exchange between waves and particles, . Implemention of a more realistic mode structure calculated by NOVAK code are also presented. This work is funded by DOE contract DE-AC02-09CH11466.

  1. Simulation of Cell Adhesion using a Particle Transport Model

    NASA Astrophysics Data System (ADS)

    Chesnutt, Jennifer

    2005-11-01

    An efficient computational method for simulation of cell adhesion through protein binding forces is discussed. In this method, the cells are represented by deformable elastic particles, and the protein binding is represented by a rate equation. The method is first developed for collision and adhesion of two similar cells impacting on each other from opposite directions. The computational method is then applied in a particle-transport model for a cloud of interacting and colliding cells, each of which are represented by particles of finite size. One application might include red blood cells adhering together to form rouleaux, which are chains of red blood cells that are found in different parts of the circulatory system. Other potential applications include adhesion of platelets to a blood vessel wall or mechanical heart valve, which is a precursor of thrombosis formation, or adhesion of cancer cells to organ walls in the lymphatic, circulatory, digestive or pulmonary systems.

  2. Transient Characterization of Type B Particles in a Transport Riser

    SciTech Connect

    Shadle, L.J.; Monazam, E.R.; Mei, J.S.

    2007-01-01

    Simple and rapid dynamic tests were used to evaluate fluid dynamic behavior of granular materials in the transport regime. Particles with densities ranging from 189 to 2,500 kg/m3 and Sauter mean size from 61 to 812 μm were tested in a 0.305 m diameter, 15.5 m height circulating fluidized bed (CFB) riser. The transient tests involved the abrupt stoppage of solids flow for each granular material over a wide range gas flow rates. The riser emptying time was linearly related to the Froude number in each of three different operating regimes. The flow structure along the height of the riser followed a distinct pattern as tracked through incremental pressures. These results are discussed to better understand the transformations that take place when operating over various regimes. During the transients the particle size distribution was measured. The effects of pressure, particle size, and density on test performance are also presented.

  3. Particle Simulations of DARHT-II Transport System

    SciTech Connect

    Poole, B; Chen, Y J

    2001-06-11

    The DARHT-II beam line utilizes a fast stripline kicker to temporally chop a high current electron beam from a single induction LINAC and deliver multiple temporal electron beam pulses to an x-ray converter target. High beam quality needs to be maintained throughout the transport line from the end of the accelerator through the final focus lens to the x-ray converter target to produce a high quality radiographic image. Issues that will affect beam quality such as spot size and emittance at the converter target include dynamic effects associated with the stripline kicker as well as emittance growth due to the nonlinear forces associated with the kicker and various focusing elements in the transport line. In addition, dynamic effects associated with transverse resistive wall instability as well as gas focusing will affect the beam transport. A particle-in-cell code is utilized to evaluate beam transport in the downstream transport line in DARHT-II. External focusing forces are included utilizing either analytic expressions or field maps. Models for wakefields from the beam kicker, transverse resistive wall instability, and gas focusing are included in the simulation to provide a more complete picture of beam transport in DARHT-II. From these simulations, for various initial beam loads based on expected accelerator performance the temporally integrated target spot size and emittance can be estimated.

  4. Transport of Particle Swarms Through Variable Aperture Fractures

    NASA Astrophysics Data System (ADS)

    Boomsma, E.; Pyrak-Nolte, L. J.

    2012-12-01

    Particle transport through fractured rock is a key concern with the increased use of micro- and nano-size particles in consumer products as well as from other activities in the sub- and near surface (e.g. mining, industrial waste, hydraulic fracturing, etc.). While particle transport is often studied as the transport of emulsions or dispersions, particles may also enter the subsurface from leaks or seepage that lead to particle swarms. Swarms are drop-like collections of millions of colloidal-sized particles that exhibit a number of unique characteristics when compared to dispersions and emulsions. Any contaminant or engineered particle that forms a swarm can be transported farther, faster, and more cohesively in fractures than would be expected from a traditional dispersion model. In this study, the effects of several variable aperture fractures on colloidal swarm cohesiveness and evolution were studied as a swarm fell under gravity and interacted with the fracture walls. Transparent acrylic was used to fabricate synthetic fracture samples with (1) a uniform aperture, (2) a converging region followed by a uniform region (funnel shaped), (3) a uniform region followed by a diverging region (inverted funnel), and (4) a cast of a an induced fracture from a carbonate rock. All of the samples consisted of two blocks that measured 100 x 100 x 50 mm. The minimum separation between these blocks determined the nominal aperture (0.5 mm to 20 mm). During experiments a fracture was fully submerged in water and swarms were released into it. The swarms consisted of a dilute suspension of 3 micron polystyrene fluorescent beads (1% by mass) with an initial volume of 5μL. The swarms were illuminated with a green (525 nm) LED array and imaged optically with a CCD camera. The variation in fracture aperture controlled swarm behavior. Diverging apertures caused a sudden loss of confinement that resulted in a rapid change in the swarm's shape as well as a sharp increase in its velocity

  5. Measurement of particle transport coefficients on Alcator C-Mod

    SciTech Connect

    Luke, T.C.T.

    1994-10-01

    The goal of this thesis was to study the behavior of the plasma transport during the divertor detachment in order to explain the central electron density rise. The measurement of particle transport coefficients requires sophisticated diagnostic tools. A two color interferometer system was developed and installed on Alcator C-Mod to measure the electron density with high spatial ({approx} 2 cm) and high temporal ({le} 1.0 ms) resolution. The system consists of 10 CO{sub 2} (10.6 {mu}m) and 4 HeNe (.6328 {mu}m) chords that are used to measure the line integrated density to within 0.08 CO{sub 2} degrees or 2.3 {times} 10{sup 16}m{sup {minus}2} theoretically. Using the two color interferometer, a series of gas puffing experiments were conducted. The density was varied above and below the threshold density for detachment at a constant magnetic field and plasma current. Using a gas modulation technique, the particle diffusion, D, and the convective velocity, V, were determined. Profiles were inverted using a SVD inversion and the transport coefficients were extracted with a time regression analysis and a transport simulation analysis. Results from each analysis were in good agreement. Measured profiles of the coefficients increased with the radius and the values were consistent with measurements from other experiments. The values exceeded neoclassical predictions by a factor of 10. The profiles also exhibited an inverse dependence with plasma density. The scaling of both attached and detached plasmas agreed well with this inverse scaling. This result and the lack of change in the energy and impurity transport indicate that there was no change in the underlying transport processes after detachment.

  6. PAHs loadings of particles as tracer for origin and transport dynamics of particles in river networks

    NASA Astrophysics Data System (ADS)

    Schwientek, Marc; Hermann, Rügner; Bennett, Jeremy-Paul; Grathwohl, Peter

    2015-04-01

    Transport of many urban pollutants in rivers is coupled to transport of suspended particles, potentially dominated by storm water overflows and mobilization of legacy contamination of sediments. Concentration of these pollutants depends on the mixture of "polluted" urban and "clean" background particles. In the current study, the total concentration of polycyclic aromatic hydrocarbons (PAHs) and the amount of total suspended solids (TSS) were meaured in the course of pronounced flood events in 3 catchments with contrast¬ing land use in Southwest Germany. Average PAHs loadings were calculated based on linear regressions of total PAHs concentrations versus TSS. For single samples PAHs loadings were estimated based on PAHs/TSS quotients. Average loadings are characteristic for each catchment and represent the number of inhabitants within the catchment per load of suspended sediment. The absence of significant long-term trends or pronounced changes of the catchment-specific loadings indicate that either input and output of PAHs into the stream networks are largely at steady state or that storage of PAHs in the sediments within the stream network are sufficient to smooth out larger fluctuations. Sampling at high temporal resolution during flood events revealed that loadings do show some short-term fluctuations and, additionally, that loadings show generally slightly decreasing trends during flood events. This is attributed to temporally and spatially varying contributions of particle inputs from sewer overflows and subcatchments which causes a changing proportion of urban and background particles. The decreasing trend is interpreted as the existence of a PAHs storage within the stream network and a slowly depletion therof in PAHs by the inputs of fresh particles in the course of the events. To better understand origin, transport and storage of contaminated particles, also metals, total organic carbon and carbonate content were measured for suspended particles

  7. Charged Particle Energization and Transport in the Magnetotail during Substorms

    NASA Astrophysics Data System (ADS)

    Pan, Qingjiang

    This dissertation addresses the problem of energization of particles (both electrons and ions) to tens and hundreds of keV and the associated transport process in the magnetotail during substorms. Particles energized in the magnetotail are further accelerated to even higher energies (hundreds of keV to MeV) in the radiation belts, causing space weather hazards to human activities in space and on ground. We develop an analytical model to quantitatively estimate flux changes caused by betatron and Fermi acceleration when particles are transported along narrow high-speed flow channels from the magnetotail to the inner magnetosphere. The model shows that energetic particle flux can be significantly enhanced by a modest compression of the magnetic field and/or shrinking of the distance between the magnetic mirror points. We use coordinated spacecraft measurements, global magnetohydrodynamic (MHD) simulations driven by measured upstream solar wind conditions, and large-scale kinetic (LSK) simulations to quantify electron local acceleration in the near-Earth reconnection region and nonlocal acceleration during plasma earthward transport. Compared to the analytical model, application of the LSK simulations is much less restrictive because trajectories of millions of test particles are calculated in the realistically determined global MHD fields and the results are statistical. The simulation results validated by the observations show that electrons following a power law distribution at high energies are generated earthward of the reconnection site, and that the majority of the energetic electrons observed in the inner magnetosphere are caused by adiabatic acceleration in association with magnetic dipolarizations and fast flows during earthward transport. We extend the global MHD+LSK simulations to examine ion energization and compare it with electron energization. The simulations demonstrate that ions in the magnetotail are first nonadiabatically accelerated in the weak

  8. Interplanetary particle transport simulation for warning system for aviation exposure to solar energetic particles

    NASA Astrophysics Data System (ADS)

    Kubo, Yûki; Kataoka, Ryuho; Sato, Tatsuhiko

    2015-07-01

    Solar energetic particles (SEPs) are one of the extreme space weather phenomena. A huge SEP event increases the radiation dose received by aircrews, who should be warned of such events as early as possible. We developed a warning system for aviation exposure to SEPs. This article describes one component of the system, which calculates the temporal evolution of the SEP intensity and the spectrum immediately outside the terrestrial magnetosphere. To achieve this, we performed numerical simulations of SEP transport in interplanetary space, in which interplanetary SEP transport is described by the focused transport equation. We developed a new simulation code to solve the equation using a set of stochastic differential equations. In the code, the focused transport equation is expressed in a magnetic field line coordinate system, which is a non-orthogonal curvilinear coordinate system. An inverse Gaussian distribution is employed as the injection profile of SEPs at an inner boundary located near the Sun. We applied the simulation to observed SEP events as a validation test. The results show that our simulation can closely reproduce observational data for the temporal evolution of particle intensity. By employing the code, we developed the WArning System for AVIation Exposure to Solar energetic particles (WASAVIES).

  9. Particle Communication and Domain Neighbor Coupling: Scalable Domain Decomposed Algorithms for Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, M. J.; Brantley, P. S.

    2015-01-20

    In order to run Monte Carlo particle transport calculations on new supercomputers with hundreds of thousands or millions of processors, care must be taken to implement scalable algorithms. This means that the algorithms must continue to perform well as the processor count increases. In this paper, we examine the scalability of:(1) globally resolving the particle locations on the correct processor, (2) deciding that particle streaming communication has finished, and (3) efficiently coupling neighbor domains together with different replication levels. We have run domain decomposed Monte Carlo particle transport on up to 221 = 2,097,152 MPI processes on the IBM BG/Q Sequoia supercomputer and observed scalable results that agree with our theoretical predictions. These calculations were carefully constructed to have the same amount of work on every processor, i.e. the calculation is already load balanced. We also examine load imbalanced calculations where each domain’s replication level is proportional to its particle workload. In this case we show how to efficiently couple together adjacent domains to maintain within workgroup load balance and minimize memory usage.

  10. A concurrent vector-based steering framework for particle transport

    NASA Astrophysics Data System (ADS)

    Apostolakis, John; Brun, René; Carminati, Federico; Gheata, Andrei; Wenzel, Sandro

    2014-06-01

    High Energy Physics has traditionally been a technology-limited science that has pushed the boundaries of both the detectors collecting the information about the particles and the computing infrastructure processing this information. However, since a few years the increase in computing power comes in the form of increased parallelism at all levels, and High Energy Physics has now to optimise its code to take advantage of the new architectures, including GPUs and hybrid systems. One of the primary targets for optimisation is the particle transport code used to simulate the detector response, as it is largely experiment independent and one of the most demanding applications in terms of CPU resources. The Geant Vector Prototype project aims to explore innovative designs in particle transport aimed at obtaining maximal performance on the new architectures. This paper describes the current status of the project and its future perspectives. In particular we describe how the present design tries to expose the parallelism of the problem at all possible levels, in a design that is aimed at minimising contentions and maximising concurrency, both at the coarse granularity level (threads) and at the micro granularity one (vectorisation, instruction pipelining, multiple instructions per cycle). The future plans and perspectives will also be mentioned.

  11. Parallelization of a Monte Carlo particle transport simulation code

    NASA Astrophysics Data System (ADS)

    Hadjidoukas, P.; Bousis, C.; Emfietzoglou, D.

    2010-05-01

    We have developed a high performance version of the Monte Carlo particle transport simulation code MC4. The original application code, developed in Visual Basic for Applications (VBA) for Microsoft Excel, was first rewritten in the C programming language for improving code portability. Several pseudo-random number generators have been also integrated and studied. The new MC4 version was then parallelized for shared and distributed-memory multiprocessor systems using the Message Passing Interface. Two parallel pseudo-random number generator libraries (SPRNG and DCMT) have been seamlessly integrated. The performance speedup of parallel MC4 has been studied on a variety of parallel computing architectures including an Intel Xeon server with 4 dual-core processors, a Sun cluster consisting of 16 nodes of 2 dual-core AMD Opteron processors and a 200 dual-processor HP cluster. For large problem size, which is limited only by the physical memory of the multiprocessor server, the speedup results are almost linear on all systems. We have validated the parallel implementation against the serial VBA and C implementations using the same random number generator. Our experimental results on the transport and energy loss of electrons in a water medium show that the serial and parallel codes are equivalent in accuracy. The present improvements allow for studying of higher particle energies with the use of more accurate physical models, and improve statistics as more particles tracks can be simulated in low response time.

  12. Overview of Particle and Heavy Ion Transport Code System PHITS

    NASA Astrophysics Data System (ADS)

    Sato, Tatsuhiko; Niita, Koji; Matsuda, Norihiro; Hashimoto, Shintaro; Iwamoto, Yosuke; Furuta, Takuya; Noda, Shusaku; Ogawa, Tatsuhiko; Iwase, Hiroshi; Nakashima, Hiroshi; Fukahori, Tokio; Okumura, Keisuke; Kai, Tetsuya; Chiba, Satoshi; Sihver, Lembit

    2014-06-01

    A general purpose Monte Carlo Particle and Heavy Ion Transport code System, PHITS, is being developed through the collaboration of several institutes in Japan and Europe. The Japan Atomic Energy Agency is responsible for managing the entire project. PHITS can deal with the transport of nearly all particles, including neutrons, protons, heavy ions, photons, and electrons, over wide energy ranges using various nuclear reaction models and data libraries. It is written in Fortran language and can be executed on almost all computers. All components of PHITS such as its source, executable and data-library files are assembled in one package and then distributed to many countries via the Research organization for Information Science and Technology, the Data Bank of the Organization for Economic Co-operation and Development's Nuclear Energy Agency, and the Radiation Safety Information Computational Center. More than 1,000 researchers have been registered as PHITS users, and they apply the code to various research and development fields such as nuclear technology, accelerator design, medical physics, and cosmic-ray research. This paper briefly summarizes the physics models implemented in PHITS, and introduces some important functions useful for specific applications, such as an event generator mode and beam transport functions.

  13. Production and global transport of Titan's sand particles

    NASA Astrophysics Data System (ADS)

    Barnes, Jason W.; Lorenz, Ralph D.; Radebaugh, Jani; Hayes, Alexander G.; Arnold, Karl; Chandler, Clayton

    2015-06-01

    Previous authors have suggested that Titan's individual sand particles form by either sintering or by lithification and erosion. We suggest two new mechanisms for the production of Titan's organic sand particles that would occur within bodies of liquid: flocculation and evaporitic precipitation. Such production mechanisms would suggest discrete sand sources in dry lakebeds. We search for such sources, but find no convincing candidates with the present Cassini Visual and Infrared Mapping Spectrometer coverage. As a result we propose that Titan's equatorial dunes may represent a single, global sand sea with west-to-east transport providing sources and sinks for sand in each interconnected basin. The sand might then be transported around Xanadu by fast-moving Barchan dune chains and/or fluvial transport in transient riverbeds. A river at the Xanadu/Shangri-La border could explain the sharp edge of the sand sea there, much like the Kuiseb River stops the Namib Sand Sea in southwest Africa on Earth. Future missions could use the composition of Titan's sands to constrain the global hydrocarbon cycle.

  14. Dust-Particle Transport in Tokamak Edge Plasmas

    SciTech Connect

    Pigarov, A Y; Krasheninnikov, S I; Soboleva, T K; Rognlien, T D

    2005-09-12

    Dust particulates in the size range of 10nm-100{micro}m are found in all fusion devices. Such dust can be generated during tokamak operation due to strong plasma/material-surface interactions. Some recent experiments and theoretical estimates indicate that dust particles can provide an important source of impurities in the tokamak plasma. Moreover, dust can be a serious threat to the safety of next-step fusion devices. In this paper, recent experimental observations on dust in fusion devices are reviewed. A physical model for dust transport simulation, and a newly developed code DUSTT, are discussed. The DUSTT code incorporates both dust dynamics due to comprehensive dust-plasma interactions as well as the effects of dust heating, charging, and evaporation. The code tracks test dust particles in realistic plasma backgrounds as provided by edge-plasma transport codes. Results are presented for dust transport in current and next-step tokamaks. The effect of dust on divertor plasma profiles and core plasma contamination is examined.

  15. Simulations of reactive transport and precipitation with smoothed particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Tartakovsky, Alexandre M.; Meakin, Paul; Scheibe, Timothy D.; Eichler West, Rogene M.

    2007-03-01

    A numerical model based on smoothed particle hydrodynamics (SPH) was developed for reactive transport and mineral precipitation in fractured and porous materials. Because of its Lagrangian particle nature, SPH has several advantages for modeling Navier-Stokes flow and reactive transport including: (1) in a Lagrangian framework there is no non-linear term in the momentum conservation equation, so that accurate solutions can be obtained for momentum dominated flows and; (2) complicated physical and chemical processes such as surface growth due to precipitation/dissolution and chemical reactions are easy to implement. In addition, SPH simulations explicitly conserve mass and linear momentum. The SPH solution of the diffusion equation with fixed and moving reactive solid-fluid boundaries was compared with analytical solutions, Lattice Boltzmann [Q. Kang, D. Zhang, P. Lichtner, I. Tsimpanogiannis, Lattice Boltzmann model for crystal growth from supersaturated solution, Geophysical Research Letters, 31 (2004) L21604] simulations and diffusion limited aggregation (DLA) [P. Meakin, Fractals, scaling and far from equilibrium. Cambridge University Press, Cambridge, UK, 1998] model simulations. To illustrate the capabilities of the model, coupled three-dimensional flow, reactive transport and precipitation in a fracture aperture with a complex geometry were simulated.

  16. Evaluation of Baltic Sea transport properties using particle tracking

    NASA Astrophysics Data System (ADS)

    Dargahi, Bijan; Cvetkovic, Vladimir

    2014-05-01

    Particle tracking model (PTM) is an effective tool for quantifying transport properties of large water bodies such as the Baltic Sea. We have applied PTM to our fully calibrated and validated Baltic Sea 3D hydrodynamic model for a 10-years period (2000-9). One hundred particles were released at a constant rate during an initial 10-days period from all the Baltic Sea sub-basins, the major rivers, and the open boundary in the Arkona Basin. In each basin, the particles were released at two different depths corresponding to the deep water and middle water layers. The objectives of the PTM simulations were to analyse the intra-exchange processes between the Baltic Sea basins and to estimate the arrival times and the paths of particles released from the rivers. The novel contribution of this study is determining the paths and arrival times of deeper water masses rather than the surface masses. Advective and diffusive transport processes in the Bornholm and Arkona basins are both driven by the interacting flows of the northern basins of the Baltic Sea and the North Sea. Particles released from Arkona basin flows northwards along the Stople Channel. The Gotland basins are the major contributors to the exchange process in the Baltic Sea. We find high values of the advection ratio, indicative of a forced advective transport process. The Bay of Gdansk is probably the most vulnerable region in the Baltic Sea. This is despite the fact that the main exchanging basins are the Bornholm Sea and the Easter Gotland Basin. The main reason is the intensive supply of the particles from the northern basins that normally take about 3000 days to reach the Bay of Gdansk. The process maintains a high level of particle concentration (90%) along its coastlines even after the 10-years period. Comparing the particle paths in the Western and Eastern Gotland basins two interesting features were found. Particles travelled in all four directions in the former basin and the middle layer particles

  17. Size segregation in bedload sediment transport at the particle scale

    NASA Astrophysics Data System (ADS)

    Frey, P.; Martin, T.

    2011-12-01

    Bedload, the larger material that is transported in stream channels, has major consequences, for the management of water resources, for environmental sustainability, and for flooding alleviation. Most particularly, in mountains, steep slopes drive intense transport of a wide range of grain sizes. Our ability to compute local and even bulk quantities such as the sediment flux in rivers is poor. One important reason is that grain-grain interactions in stream channels may have been neglected. An arguably most important difficulty pertains to the very wide range of grain size leading to grain size sorting or segregation. This phenomenon largely modifies fluxes and results in patterns that can be seen ubiquitously in nature such as armoring or downstream fining. Most studies have concerned the spontaneous percolation of fine grains into immobile gravels, because of implications for salmonid spawning beds, or stratigraphical interpretation. However when the substrate is moving, the segregation process is different as statistically void openings permit downward percolation of larger particles. This process also named "kinetic sieving" has been studied in industrial contexts where segregation of granular or powder materials is often non-desirable. We present an experimental study of two-size mixtures of coarse spherical glass beads entrained by a shallow turbulent and supercritical water flow down a steep channel with a mobile bed. The particle diameters were 4 and 6mm, the channel width 6.5mm and the channel inclination ranged from 7.5 to 12.5%. The water flow rate and the particle rate were kept constant at the upstream entrance. First only the coarser particle rate was input and adjusted to obtain bed load equilibrium, that is, neither bed degradation nor aggradation over sufficiently long time intervals. Then a low rate of smaller particles (about 1% of the total sediment rate) was introduced to study the spatial and temporal evolution of segregating smaller particles

  18. Transport coefficients of solid particles immersed in a viscous gas.

    PubMed

    Garzó, Vicente; Fullmer, William D; Hrenya, Christine M; Yin, Xiaolong

    2016-01-01

    Transport properties of a suspension of solid particles in a viscous gas are studied. The dissipation in such systems arises from two sources: inelasticity in particle collisions and viscous dissipation due to the effect of the gas phase on the particles. Here we consider a simplified case in which the mean relative velocity between the gas and solid phases is taken to be zero, such that "thermal drag" is the only remaining gas-solid interaction. Unlike the previous, more general, treatment of the drag force [Garzó et al., J. Fluid Mech. 712, 129 (2012)]JFLSA70022-112010.1017/jfm.2012.404, here we take into account contributions to the (scaled) transport coefficients η^{*} (shear viscosity), κ^{*} (thermal conductivity), and μ^{*} (Dufour-like coefficient) coming from the temperature dependence of the (dimensionless) friction coefficient γ^{*} characterizing the amplitude of the drag force. At moderate densities, the thermal drag model (which is based on the Enskog kinetic equation) is solved by means of the Chapman-Enskog method and the Navier-Stokes transport coefficients are determined in terms of the coefficient of restitution, the solid volume fraction, and the friction coefficient. The results indicate that the effect of the gas phase on η^{*} and μ^{*} is non-negligible (especially in the case of relatively dilute systems) while the form of κ^{*} is the same as the one obtained in the dry granular limit. Finally, as an application of these results, a linear stability analysis of the hydrodynamic equations is carried out to analyze the conditions for stability of the homogeneous cooling state. A comparison with direct numerical simulations shows a good agreement for conditions of practical interest. PMID:26871141

  19. Transport coefficients of solid particles immersed in a viscous gas

    NASA Astrophysics Data System (ADS)

    Garzó, Vicente; Fullmer, William D.; Hrenya, Christine M.; Yin, Xiaolong

    2016-01-01

    Transport properties of a suspension of solid particles in a viscous gas are studied. The dissipation in such systems arises from two sources: inelasticity in particle collisions and viscous dissipation due to the effect of the gas phase on the particles. Here we consider a simplified case in which the mean relative velocity between the gas and solid phases is taken to be zero, such that "thermal drag" is the only remaining gas-solid interaction. Unlike the previous, more general, treatment of the drag force [Garzó et al., J. Fluid Mech. 712, 129 (2012)], 10.1017/jfm.2012.404, here we take into account contributions to the (scaled) transport coefficients η* (shear viscosity), κ* (thermal conductivity), and μ* (Dufour-like coefficient) coming from the temperature dependence of the (dimensionless) friction coefficient γ* characterizing the amplitude of the drag force. At moderate densities, the thermal drag model (which is based on the Enskog kinetic equation) is solved by means of the Chapman-Enskog method and the Navier-Stokes transport coefficients are determined in terms of the coefficient of restitution, the solid volume fraction, and the friction coefficient. The results indicate that the effect of the gas phase on η* and μ* is non-negligible (especially in the case of relatively dilute systems) while the form of κ* is the same as the one obtained in the dry granular limit. Finally, as an application of these results, a linear stability analysis of the hydrodynamic equations is carried out to analyze the conditions for stability of the homogeneous cooling state. A comparison with direct numerical simulations shows a good agreement for conditions of practical interest.

  20. Probabilistic description of particle transport. III. Inelastic scattering

    SciTech Connect

    Goulet, T.; Keszei, E.; Jay-Gerin, J. Departement de Medecine Nucleaire et de Radiobiologie, Faculte de Medecine, Universite de Sherbrooke, Sherbrooke, PQ )

    1990-06-01

    We extend our probabilistic model of quasielastic particle transport to include possible inelastic scatterings of the particles in the bulk of the studied media. We show that this extended model can be used to describe different types of experiments involving electrons that go through or are reflected by a plane-parallel layer deposited on a substrate. In particular, we reanalyze the experimental results of low-energy ({approx lt}10 eV) electron transmission through solid xenon and solid molecular nitrogen. This analysis shows that the extended model is consistent with the quasielastic one, but is more powerful since we can now determine both the elastic and inelastic electron mean free paths. The analysis allows one to study the threshold creation of excitons that can be observed at about 8.5 and 9.5 eV in solid xenon, and around 7.5 eV in solid molecular nitrogen.

  1. Field-aligned Transport and Acceleration of Solar Energetic Particles

    NASA Astrophysics Data System (ADS)

    Borovikov, D.; Sokolov, I.; Tenishev, V.; Gombosi, T. I.

    2015-12-01

    Solar Energetic Particle (SEP) phenomena represent one of the major components of space weather. Often, but not exclusively associated with Coronal Mass Ejections (CMEs), they pose a significant scientific as well as practical interest. As these particles originate at such explosive events, they have energies up to several GeV. SEP may cause disruptions in operations of space instruments and spacecrafts and are dangerous to astronauts. For this reason, studies of SEP events and predictions of their impact are of great importance. The motion and acceleration of SEP, though kinetic in nature, is governed by Interplanetary Magnetic Field (IMF) and its disturbances. Therefore, a consistent and accurate simulation and predictive tool must include a realistic MHD model of IMF. At the same time, transport of SEP is essentially one-dimensional as at high energies particles are tied to magnetic field lines. This allows building a model that can effectively map active regions on the solar surface onto various regions of the Solar System thus predicting the affected regions of the at any distance from the Sun. We present the first attempt to construct a model that employs coupling of MHD and kinetic models. The former describes the evolution of IMF disturbed by CME, while the latter simulates particles moving along the field lines extracted from MHD model. The first results are provided.

  2. Transport and discrete particle noise in gyrokinetic simulations

    NASA Astrophysics Data System (ADS)

    Jenkins, Thomas; Lee, W. W.

    2006-10-01

    We present results from our recent investigations regarding the effects of discrete particle noise on the long-time behavior and transport properties of gyrokinetic particle-in-cell simulations. It is found that the amplitude of nonlinearly saturated drift waves is unaffected by discreteness-induced noise in plasmas whose behavior is dominated by a single mode in the saturated state. We further show that the scaling of this noise amplitude with particle count is correctly predicted by the fluctuation-dissipation theorem, even though the drift waves have driven the plasma from thermal equilibrium. As well, we find that the long-term behavior of the saturated system is unaffected by discreteness-induced noise even when multiple modes are included. Additional work utilizing a code with both total-f and δf capabilities is also presented, as part of our efforts to better understand the long- time balance between entropy production, collisional dissipation, and particle/heat flux in gyrokinetic plasmas.

  3. Quantum interference effects in particle transport through square lattices

    NASA Astrophysics Data System (ADS)

    Cuansing, E.; Nakanishi, H.

    2004-12-01

    We study the transport of a quantum particle through square lattices of various sizes by employing the tight-binding Hamiltonian from quantum percolation. Input and output semi-infinite chains are attached to the lattice either by diagonal point-to-point contacts or by a busbar connection. We find resonant transmission and reflection occurring whenever the incident particle’s energy is near an eigenvalue of the lattice alone (i.e., the lattice without the chains attached). We also find the transmission to be strongly dependent on the way the chains are attached to the lattice.

  4. Hollow-core waveguide characterization by optically induced particle transport.

    PubMed

    Measor, Philip; Kühn, Sergei; Lunt, Evan J; Phillips, Brian S; Hawkins, Aaron R; Schmidt, Holger

    2008-04-01

    We introduce a method for optical characterization of hollow-core optical waveguides. Radiation pressure exerted by the waveguide modes on dielectric microspheres is used to analyze salient properties such as propagation loss and waveguide mode profiles. These quantities were measured for quasi-single-mode and multimode propagation in on-chip liquid-filled hollow-core antiresonant reflecting optical waveguides. Excellent agreement with analytical and numerical models is found, demonstrating that optically induced particle transport provides a simple, inexpensive, and nondestructive alternative to other characterization methods. PMID:18382513

  5. Fluid flow and particle transport in mechanically ventilated airways. Part II: particle transport.

    PubMed

    Alzahrany, Mohammed; Van Rhein, Timothy; Banerjee, Arindam; Salzman, Gary

    2016-07-01

    The flow mechanisms that play a role on aerosol deposition were identified and presented in a companion paper (Timothy et al. in Med Biol Eng Comput. doi: 10.1007/s11517-015-1407-3 , 2015). In the current paper, the effects of invasive conventional mechanical ventilation waveforms and endotracheal tube (ETT) on the aerosol transport were investigated. In addition to the enhanced deposition seen at the carinas of the airway bifurcations, enhanced deposition was also seen in the right main bronchus due to impaction and turbulent dispersion resulting from the fluid structures created by jet caused by the ETT. The orientation of the ETT toward right bronchus resulted in a substantial deposition inside right lung compared to left lung. The deposition inside right lung was ~12-fold higher than left lung for all considered cases, except for the case of using pressure-controlled sinusoidal waveform where a reduction of this ratio by ~50 % was found. The total deposition during pressure constant, volume ramp, and ascending ramp waveforms was similar and ~1.44 times higher than deposition fraction when using pressure sinusoidal waveform. Varying respiratory waveform demonstrated a significant role on the deposition enhancement factors and give evidence of drug aerosol concentrations in key deposition sites, which may be significant for drugs with negative side effects in high concentrations. These observations are thought to be important for ventilation treatment strategy. PMID:26541600

  6. From flow and particle transport modeling to vibration isolation

    NASA Astrophysics Data System (ADS)

    Ellison, Joseph Fabian

    2001-08-01

    This thesis is composed of two parts. Part I is devoted to the analysis of particle transport and deposition. In this part, flow and particle transport and deposition in a furnace and under microgravity conditions are analyzed. In the first study of Part I, fluid flow, combustion, heat and mass transfer involved in a methane/air furnace were studied. The purpose of this study was to investigate variations in the flow field and thermal conditions in the furnace and to develop methods for improving its efficiency. The analysis of the combustor model was performed using an unstructured grid model developed with the Gambit grid generator of FLUENT version 5. In the second study of Part I, particle dispersion in a liquid filled box under orbital g-jitter excitation is analyzed. The study investigated particle motion experiments that were performed aboard the orbiting shuttle. The experiments have provided confusing data as to the nature of particle dispersion in the orbital environment. To obtain a better understanding of the dynamics involved, a series of numerical simulations are performed to study the dispersion of suspended particles subject to g-jitter excitations. Part II of the thesis is devoted to the analysis of vibration and vibration isolation problems. Following along the lines of vibration effecting system performance, a study of vibration isolation used to protect avionics equipment from adverse aircraft vibration environments was conducted. Passive isolation is the simplest means to achieve this goal. The system used here consisted of a circular steel ring with a lump mass on top and exposed to base excitation. Sinusoidal and filtered zero-mean Gaussian white noise were used to excite the structure and the acceleration response spectra at the top of the ring were computed. An experiment was performed to identify the natural frequencies and modal damping of the circular ring. The polished homogeneity measurement of large optics mounted in a vertical ring

  7. Particle transport and flow modulation in particle-laden mixing layers

    NASA Astrophysics Data System (ADS)

    Tong, Xiao-Ling

    Shear flows provide a means to rapidly mix and disperse discrete solid particles and droplets in natural and industrial processes. Moderate mass loadings of particles in a gas mixing layer may also alter the gas shear flow. While the modeling of single-phase shear flows has undergone several decades of development and validation, the consideration of the corresponding problem in two- phase shear flows has just began. This dissertation represents a systematic effort to use a tool known as direct numerical simulations (DNS) to advance our understanding of particle transport and flow modulation in a gas mixing layer laden with solid particles. In DNS, almost all dynamically important flow scales are directly resolved. Previously, DNS of three-dimensional (3D) particle-laden shear flows have not been possible due to their high computational cost. Therefore, we first set out to develop and validate a computationally efficient and numerically accurate DNS methodology for particle-laden mixing layer. The method relies on a Fourier vorticity-based formulation together with a divergence-free decomposition. While almost all previous numerical studies adopted the trajectory approach for the dispersed phase in the context of DNS, a continuum approach has been developed and shown to reduce the computational time by a factor of 15 for the simulations of 3D particle-laden mixing layers. The validity and interpretation of the continuum approach were illustrated analytically with a stagnation point flow model. Detailed comparisons showed that the continuum approach and the trajectory approach yielded very similar results. Since the particulate field is compressible, numerical diffusion must be applied to remove local singularities. A dynamic-diffusion model has been developed as an optimum numerical diffusion model to ensure spectral resolution of particulate continuum fields. The numerical method was then used to study the interactions of finite-inertia particles with 3D flow

  8. Exposure visualisation of ultrafine particle counts in a transport microenvironment

    NASA Astrophysics Data System (ADS)

    Kaur, S.; Clark, R. D. R.; Walsh, P. T.; Arnold, S. J.; Colvile, R. N.; Nieuwenhuijsen, M. J.

    An increasing number of studies indicate that short-term peak exposures, such as those seen in the transport microenvironment, pose particular health threats. Short-term exposure can only be sufficiently characterised using portable, fast-response monitoring instrumentation with detailed summaries of individual activity. In this paper, we present an exposure visualisation system that addresses this issue—it allows the simultaneous presentation of mobile video imagery synchronised with measured real-time ultrafine particle count exposure of an individual. The combined data can be examined in detail for the contribution of the surrounding environment and the individual's activities to their peak and overall exposure. The exposure visualisation system is demonstrated and evaluated around the DAPPLE study site in Central London using different modes of transport (walking, cycling, bus, car and taxi). The video images, synchronised with the exposure profile, highlight the extent to which ultrafine particle exposure is associated with traffic density and proximity to pollutant source. The extremely rapid decline in concentration with increasing distance away from the pollutant source, such as from the main street to the backstreets, is clearly evident. The visualisation technique allows these data to be presented to both technical audiences and laypersons thus making it an effective environmental risk communication tool. Some exposure peaks however are not obviously associated with any event recorded on video—in these cases it will be necessary to use advanced dispersion modelling techniques to investigate meteorological conditions and other variables influencing in-street conditions to identify their possible causes.

  9. High energy electromagnetic particle transportation on the GPU

    SciTech Connect

    Canal, P.; Elvira, D.; Jun, S. Y.; Kowalkowski, J.; Paterno, M.; Apostolakis, J.

    2014-01-01

    We present massively parallel high energy electromagnetic particle transportation through a finely segmented detector on a Graphics Processing Unit (GPU). Simulating events of energetic particle decay in a general-purpose high energy physics (HEP) detector requires intensive computing resources, due to the complexity of the geometry as well as physics processes applied to particles copiously produced by primary collisions and secondary interactions. The recent advent of hardware architectures of many-core or accelerated processors provides the variety of concurrent programming models applicable not only for the high performance parallel computing, but also for the conventional computing intensive application such as the HEP detector simulation. The components of our prototype are a transportation process under a non-uniform magnetic field, geometry navigation with a set of solid shapes and materials, electromagnetic physics processes for electrons and photons, and an interface to a framework that dispatches bundles of tracks in a highly vectorized manner optimizing for spatial locality and throughput. Core algorithms and methods are excerpted from the Geant4 toolkit, and are modified and optimized for the GPU application. Program kernels written in C/C++ are designed to be compatible with CUDA and OpenCL and with the aim to be generic enough for easy porting to future programming models and hardware architectures. To improve throughput by overlapping data transfers with kernel execution, multiple CUDA streams are used. Issues with floating point accuracy, random numbers generation, data structure, kernel divergences and register spills are also considered. Performance evaluation for the relative speedup compared to the corresponding sequential execution on CPU is presented as well.

  10. Simulating the transport of heavy charged particles through trabecular spongiosa

    NASA Astrophysics Data System (ADS)

    Gersh, Jacob A.

    As planning continues for manned missions far beyond Low Earth Orbit, a paramount concern remains the flight crew's exposure to galactic cosmic radiation. When humans exit the protective magnetic field of Earth, they become subject to bombardment by highly-reactive heavy charged (HZE) particles. A possible consequence of this two- to three-year-long mission is the onset of radiation-induced leukemia, a disorder with a latency period as short as two to three years. Because data on risk to humans from exposure to HZE particles is non-existent, studies of leukemia in animals are now underway to investigate the relative effectiveness of HZE exposures. Leukemogenesis can result from energy depositions occurring within marrow contained in the trabecular spongiosa. Trabecular spongiosa is found in flat bones and within the ends of long bones, and is characterized by an intricate matrix of interconnected bone tissue forming cavities that house marrow. The microscopic internal dimensions of spongiosa vary between species. As radiation traverses this region, interface-induced dose perturbations that occur at the interfaces between bone and marrow affect the patterns of energy deposition within the region. An aim of this project is to determine the extent by which tissue heterogeneity and microscopic dimensions have on patterns of energy deposition within the trabecular spongiosa. This leads to the development of PATHFIT, a computer code capable of generating simple quadric-based geometric models of trabecular spongiosa for both humans and mice based on actual experimentally-determined internal dimensions of trabecular spongiosa. Following the creation of spongiosa models, focus is placed on the development of HITSPAP, a hybrid Monte Carlo (MC) radiation transport code system that combines capabilities of the MC code PENELOPE and MC code PARTRAC. This code is capable of simulating the transport of HZE particles through accurate models of trabecular spongiosa. The final and

  11. Evidence for particle transport between alveolar macrophages in vivo

    SciTech Connect

    Benson, J.M.; Nikula, K.J.; Guilmette, R.A.

    1995-12-01

    Recent studies at this Institute have focused on determining the role of alveolar macrophages (AMs) in the transport of particles within and form the lung. For those studies, AMs previously labeled using the nuclear stain Hoechst 33342 and polychromatic Fluoresbrite microspheres (1 {mu}m diameter, Polysciences, Inc., Warrington, PA) were instilled into lungs of recipient F344 rats. The fate of the donor particles and the doubly labeled AMs within recipient lungs was followed for 32 d. Within 2-4 d after instillation, the polychromatic microspheres were found in both donor and resident AMs, suggesting that particle transfer occurred between the donor and resident AMs. However, this may also have been an artifact resulting from phagocytosis of the microspheres form dead donor cells or from the fading or degradation of Hoechst 33342 within the donor cells leading to their misidentification as resident AMs. The results support the earlier findings that microspheres in donor AMs can be transferred to resident AMs within 2 d after instillation.

  12. Transport of large particles in flow through porous media

    NASA Astrophysics Data System (ADS)

    Imdakm, A. O.; Sahimi, Muhammad

    1987-12-01

    There is considerable evidence indicating that significant reduction in the efficiency of many processes in porous media, such as enhancing oil recovery, heterogeneous chemical reactions, deep-bed filtration, gel permeation, and liquid chromatography, is due to the reduction in the permeability of the pore space. This reduction is due to the transport of particles, whose sizes are comparable with those of the pores, and the subsequent blocking of the pores by various mechanisms. In this paper we develop a novel Monte Carlo method for theoretical modeling of this phenomenon. Particles of various sizes are injected into the medium, and their migration in the flow field is modeled by a random walk whose transition porbability is proportional to the local pore fluxes. Pores are blocked and their flow capacity is reduced (or vanished) when large particles pass through them (and reduce their flow) or totally block them. The permeability of the medium can ultimately vanish and, therefore, this phenomenon is a percolation process. Various quantities of interest such as the variations of the permeability with process time and the distribution of pore-plugging times are computed. The critical exponent characterizing the vanishing of the permeability near the percolation threshold appears to be different from that of percolation conductivity. The agreement between our results and the available experimental data is excellent.

  13. Particle Swarm Transport through Immiscible Fluid Layers in a Fracture

    NASA Astrophysics Data System (ADS)

    Teasdale, N. D.; Boomsma, E.; Pyrak-Nolte, L. J.

    2011-12-01

    Immiscible fluids occur either naturally (e.g. oil & water) or from anthropogenic processes (e.g. liquid CO2 & water) in the subsurface and complicate the transport of natural or engineered micro- or nano-scale particles. In this study, we examined the effect of immiscible fluids on the formation and evolution of particle swarms in a fracture. A particle swarm is a collection of colloidal-size particles in a dilute suspension that exhibits cohesive behavior. Swarms fall under gravity with a velocity that is greater than the settling velocity of a single particle. Thus a particle swarm of colloidal contaminants can potentially travel farther and faster in a fracture than expected for a dispersion or emulsion of colloidal particles. We investigated the formation, evolution, and break-up of colloidal swarms under gravity in a uniform aperture fracture as hydrophobic/hydrophyllic particle swarms move across an oil-water interface. A uniform aperture fracture was fabricated from two transparent acrylic rectangular prisms (100 mm x 50 mm x 100 mm) that are separated by 1, 2.5, 5, 10 or 50 mm. The fracture was placed, vertically, inside a glass tank containing a layer of pure silicone oil (polydimethylsiloxane) on distilled water. Along the length of the fracture, 30 mm was filled with oil and 70 mm with water. Experiments were conducted using silicone oils with viscosities of 5, 10, 100, or 1000 cSt. Particle swarms (5 μl) were comprised of a 1% concentration (by mass) of 25 micron glass beads (hydrophilic) suspended in a water drop, or a 1% concentration (by mass) of 3 micron polystyrene fluorescent beads (hydrophobic) suspended in a water drop. The swarm behavior was imaged using an optical fluorescent imaging system composed of a CCD camera and by green (525 nm) LED arrays for illumination. Swarms were spherical and remained coherent as they fell through the oil because of the immiscibility of oil and water. However, as a swarm approached the oil-water interface, it

  14. Charged Particle Energization and Transport in Reservoirs throughout the Heliosphere: 1. Solar Energetic Particles

    NASA Astrophysics Data System (ADS)

    Roelof, E. C.

    2015-09-01

    “Reservoirs” of energetic charged particles are regions where the particle population is quasi-trapped in large-scale (relative to the gyroradii) magnetic field structures. Reservoirs are found throughout the heliosphere: the huge heliosheath (90particles within these reservoirs is produced by the interaction when the particle magnetic drifts have a component along the large-scale electric fields produced by plasma convection. The appropriate description of this transport is “weak scattering”, in which the particle's first adiabatic invariant (magnetic moment) is approximately conserved while the particle itself moves rather freely along magnetic field lines. Considerable insight into the observed properties of energization processes can be gained from a remarkably simple equation that describes the particle's fractional time-rate-of-change of momentum (dlnp/dt) which depends only upon its pitch angle, the divergence of the plasma velocity (V⊥) transverse to the magnetic field), and the inner product of (V⊥) with the curvature vector of the field lines. The possibilities encompassed in this simple (but general) equation are quite rich, so we restrict our application of it in this paper to the compressive acceleration of SEPs within CMEs.

  15. Particle-bound polycyclic aromatic hydrocarbon concentrations in transportation microenvironments

    NASA Astrophysics Data System (ADS)

    Houston, Douglas; Wu, Jun; Yang, Dongwoo; Jaimes, Guillermo

    2013-06-01

    This study is one of the first case studies to characterize the exposure of urban residents to traffic-related air pollution across locations and transportation microenvironments during everyday activities. Twenty-four adult residents of Boyle Heights, a neighborhood near downtown Los Angeles, carried a portable air pollution monitor and a Global Positioning Systems (GPS) tracking device for a total of 96 days. We found significant spatial and temporal variation in the particle-bound polycyclic aromatic hydrocarbon (pPAH) concentrations in transportation microenvironments. Average pPAH concentrations were higher while walking outdoors (190 ng m-3) compared to traveling in private passenger vehicles (138-155 ng m-3) or traveling in public transportation (61-124 ng m-3). Although travel comprised 5% of participant days, it was associated with 27% of overall daily pPAH exposure. Regression models explained 40-55% of the variation in daily average pPAH concentrations, and 40-44% of the variation in 1-min interval concentrations. Important factors included time spent traveling, travel speed, meteorological and nearby land use factors, time of day, and proximity to roadways. Although future research is needed to develop stronger predictive models, our study demonstrates portable tracking devices can provide a more complete, diurnal characterization of air pollution exposures for urban populations.

  16. Helium, Iron and Electron Particle Transport and Energy Transport Studies on the TFTR Tokamak

    DOE R&D Accomplishments Database

    Synakowski, E. J.; Efthimion, P. C.; Rewoldt, G.; Stratton, B. C.; Tang, W. M.; Grek, B.; Hill, K. W.; Hulse, R. A.; Johnson, D .W.; Mansfield, D. K.; McCune, D.; Mikkelsen, D. R.; Park, H. K.; Ramsey, A. T.; Redi, M. H.; Scott, S. D.; Taylor, G.; Timberlake, J.; Zarnstorff, M. C. (Princeton Univ., NJ (United States). Plasma Physics Lab.); Kissick, M. W. (Wisconsin Univ., Madison, WI (United States))

    1993-03-01

    Results from helium, iron, and electron transport on TFTR in L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power are presented. They are compared to results from thermal transport analysis based on power balance. Particle diffusivities and thermal conductivities are radially hollow and larger than neoclassical values, except possibly near the magnetic axis. The ion channel dominates over the electron channel in both particle and thermal diffusion. A peaked helium profile, supported by inward convection that is stronger than predicted by neoclassical theory, is measured in the Supershot The helium profile shape is consistent with predictions from quasilinear electrostatic drift-wave theory. While the perturbative particle diffusion coefficients of all three species are similar in the Supershot, differences are found in the L-Mode. Quasilinear theory calculations of the ratios of impurity diffusivities are in good accord with measurements. Theory estimates indicate that the ion heat flux should be larger than the electron heat flux, consistent with power balance analysis. However, theoretical values of the ratio of the ion to electron heat flux can be more than a factor of three larger than experimental values. A correlation between helium diffusion and ion thermal transport is observed and has favorable implications for sustained ignition of a tokamak fusion reactor.

  17. Helium, iron and electron particle transport and energy transport studies on the TFTR tokamak

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Grek, B.; Hill, K.W.; Hulse, R.A.; Johnson, D.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Redi, M.H.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.; Kissick, M.W.

    1993-03-01

    Results from helium, iron, and electron transport on TFTR in L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power are presented. They are compared to results from thermal transport analysis based on power balance. Particle diffusivities and thermal conductivities are radially hollow and larger than neoclassical values, except possibly near the magnetic axis. The ion channel dominates over the electron channel in both particle and thermal diffusion. A peaked helium profile, supported by inward convection that is stronger than predicted by neoclassical theory, is measured in the Supershot The helium profile shape is consistent with predictions from quasilinear electrostatic drift-wave theory. While the perturbative particle diffusion coefficients of all three species are similar in the Supershot, differences are found in the L-Mode. Quasilinear theory calculations of the ratios of impurity diffusivities are in good accord with measurements. Theory estimates indicate that the ion heat flux should be larger than the electron heat flux, consistent with power balance analysis. However, theoretical values of the ratio of the ion to electron heat flux can be more than a factor of three larger than experimental values. A correlation between helium diffusion and ion thermal transport is observed and has favorable implications for sustained ignition of a tokamak fusion reactor.

  18. The importance of gradients in particle activity during sediment transport: Insights from a probabilistic description of particle motions

    NASA Astrophysics Data System (ADS)

    Furbish, D. J.

    2009-04-01

    Sediment particles transported by rainsplash, by bioturbation, and as bedload in turbulent flows, undergo motions that are quasi-random in magnitude and direction. Moreover, these motions characteristically are intermittent, in that particles are mostly at rest most of the time, and heterogeneous, in that the volumetric or areal concentration of particles in motion at any instant is spatially patchy. These particle motions can be formulated as a stochastic processes involving both advective and dispersive parts. By taking into account the intermittent activity of particles, and separating this activity from the physics of motion in the parametric description of transport, the formulation indicates that gradients in particle activity can have a key role in transport. The formulation illustrates, for example, how the growth of soil mounds beneath desert shrubs involves differential rainsplash that initially causes more grains to be splashed inward beneath protective shrub canopies than outward. This ‘harvesting' of nearby soil material, including nutrients, means that shrubs locally participate in regulating the rate sediment transport down a hillslope. With soil bioturbation, spatial variations in the disturbance frequency strongly influence the mixing of soil constituents, including distinct particle fractions (such as specific size or mineral fractions, seeds, or debitage), or elements and compounds adsorbed to particles. The formulation also provides a probabilistic version of the Exner equation. During bedload transport, gradients in particle activity, through both advective and dispersive effects, may contribute importantly to the local divergence of the particle flux, thereby influencing initial bedform growth.

  19. Transport of inertial particles by viscous streaming in arrays of oscillating probes

    NASA Astrophysics Data System (ADS)

    Chong, Kwitae; Kelly, Scott D.; Smith, Stuart T.; Eldredge, Jeff D.

    2016-01-01

    A mechanism for the transport of microscale particles in viscous fluids is demonstrated. The mechanism exploits the trapping of such particles by rotational streaming cells established in the vicinity of an oscillating cylinder, recently analyzed in previous work. The present work explores a strategy of transporting particles between the trapping points established by multiple cylinders undergoing oscillations in sequential intervals. It is demonstrated that, by controlling the sequence of oscillation intervals, an inertial particle is effectively and predictably transported between the stable trapping points. Arrays of cylinders in various arrangements are investigated, revealing a technique for constructing arbitrary particle trajectories. It is found that the domain from which particles can be transported and trapped by an oscillator is extended, even to regions in which particles are shielded, by the presence of other stationary cylinders. The timescales for transport are examined, as are the mechanisms by which particles are drawn away from an obstacle toward the trapping point of an oscillator.

  20. Directed transport of active particles over asymmetric energy barriers.

    PubMed

    Koumakis, N; Maggi, C; Di Leonardo, R

    2014-08-21

    We theoretically and numerically investigate the transport of active colloids to target regions, delimited by asymmetric energy barriers. We show that it is possible to introduce a generalized effective temperature that is related to the local variance of particle velocities. The stationary probability distributions can be derived from a simple diffusion equation in the presence of an inhomogeneous effective temperature resulting from the action of external force fields. In particular, transition rates over asymmetric energy barriers can be unbalanced by having different effective temperatures over the two slopes of the barrier. By varying the type of active noise, we find that equal values of diffusivity and persistence time may produce strongly varied effective temperatures and thus stationary distributions. PMID:24978345

  1. Transport coefficients from the two particle irreducible effective action

    NASA Astrophysics Data System (ADS)

    Aarts, Gert; Martínez Resco, Jose M.

    2003-10-01

    We show that the lowest nontrivial truncation of the two-particle irreducible (2PI) effective action correctly determines transport coefficients in a weak coupling or 1/N expansion at leading (logarithmic) order in several relativistic field theories. In particular, we consider a single real scalar field with cubic and quartic interactions in the loop expansion, the O(N) model in the 2PI-1/N expansion, and QED with single and many fermion fields. Therefore, these truncations will provide a correct description, to leading (logarithmic) order, of the long time behavior of these systems, i.e. the approach to equilibrium. This supports the promising results obtained for the dynamics of quantum fields out of equilibrium using 2PI effective action techniques.

  2. Magnetic-Fluctuation-Induced Particle Transport and Density Relaxation in a High-Temperature Plasma

    SciTech Connect

    Ding, W. X.; Brower, D. L.; Fiksel, G.; Den Hartog, D. J.; Prager, S. C.; Sarff, J. S.

    2009-07-10

    The first direct measurement of magnetic-fluctuation-induced particle flux in the core of a high-temperature plasma is reported. Transport occurs due to magnetic field fluctuations associated with global tearing instabilities. The electron particle flux, resulting from the correlated product of electron density and radial magnetic fluctuations, accounts for density profile relaxation during a magnetic reconnection event. The measured particle transport is much larger than that expected for ambipolar particle diffusion in a stochastic magnetic field.

  3. A unified transport equation for both cosmic rays and thermal particles

    NASA Technical Reports Server (NTRS)

    Williams, L. L.; Schwadron, N.; Jokipii, J. R.; Gombosi, T. I.

    1993-01-01

    We present a unified transport equation that is valid for particles of all energies if the particle mean free paths are much smaller than macroscopic fluid length scales. If restricted to particles with random speeds much greater than fluid flow speeds, this equation reduces to the previously discussed extended cosmic-ray transport equation. It is significant that this allows one to describe the acceleration of particles from thermal energies to cosmic-ray energies using one transport equation. This is in contrast to previous transport equations (the Parker equation and the extended cosmic-ray transport equation), which were restricted to fast particles. The close connection to the extended cosmic-ray transport equation is demonstrated.

  4. An approach to improving transporting velocity in the long-range ultrasonic transportation of micro-particles

    SciTech Connect

    Meng, Jianxin; Mei, Deqing Yang, Keji; Fan, Zongwei

    2014-08-14

    In existing ultrasonic transportation methods, the long-range transportation of micro-particles is always realized in step-by-step way. Due to the substantial decrease of the driving force in each step, the transportation is lower-speed and stair-stepping. To improve the transporting velocity, a non-stepping ultrasonic transportation approach is proposed. By quantitatively analyzing the acoustic potential well, an optimal region is defined as the position, where the largest driving force is provided under the condition that the driving force is simultaneously the major component of an acoustic radiation force. To keep the micro-particle trapped in the optimal region during the whole transportation process, an approach of optimizing the phase-shifting velocity and phase-shifting step is adopted. Due to the stable and large driving force, the displacement of the micro-particle is an approximately linear function of time, instead of a stair-stepping function of time as in the existing step-by-step methods. An experimental setup is also developed to validate this approach. Long-range ultrasonic transportations of zirconium beads with high transporting velocity were realized. The experimental results demonstrated that this approach is an effective way to improve transporting velocity in the long-range ultrasonic transportation of micro-particles.

  5. DANTSYS: a system for deterministic, neutral particle transport calculations

    SciTech Connect

    Alcouffe, R.E.; Baker, R.S.

    1996-12-31

    The THREEDANT code is the latest addition to our system of codes, DANTSYS, which perform neutral particle transport computations on a given system of interest. The system of codes is distinguished by geometrical or symmetry considerations. For example, ONEDANT and TWODANT are designed for one and two dimensional geometries respectively. We have TWOHEX for hexagonal geometries, TWODANT/GQ for arbitrary quadrilaterals in XY and RZ geometry, and THREEDANT for three-dimensional geometries. The design of this system of codes is such that they share the same input and edit module and hence the input and output is uniform for all the codes (with the obvious additions needed to specify each type of geometry). The codes in this system are also designed to be general purpose solving both eigenvalue and source driven problems. In this paper we concentrate on the THREEDANT module since there are special considerations that need to be taken into account when designing such a module. The main issues that need to be addressed in a three-dimensional transport solver are those of the computational time needed to solve a problem and the amount of storage needed to accomplish that solution. Of course both these issues are directly related to the number of spatial mesh cells required to obtain a solution to a specified accuracy, but is also related to the spatial discretization method chosen and the requirements of the iteration acceleration scheme employed as will be noted below. Another related consideration is the robustness of the resulting algorithms as implemented; because insistence on complete robustness has a significant impact upon the computation time. We address each of these issues in the following through which we give reasons for the choices we have made in our approach to this code. And this is useful in outlining how the code is evolving to better address the shortcomings that presently exist.

  6. M3D-K simulations of sawteeth and energetic particle transport in tokamak plasmas

    NASA Astrophysics Data System (ADS)

    Shen, Wei; Fu, G. Y.; Sheng, Zheng-Mao; Breslau, J. A.; Wang, Feng

    2014-09-01

    Nonlinear simulations of sawteeth and related energetic particle transport are carried out using the kinetic/magnetohydrodynamic (MHD) hybrid code M3D-K. MHD simulations show repeated sawtooth cycles for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in the plasma core, depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with existing theories. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases with increasing particle energy.

  7. M3D-K Simulations of Sawteeth and Energetic Particle Transport in Tokamak Plasmas

    NASA Astrophysics Data System (ADS)

    Shen, Wei; Fu, Guoyong; Sheng, Zhengmao; Breslau, Joshua; Wang, Feng

    2013-10-01

    Nonlinear simulations of Sawteeth and energetic particle transport are carried out using the kinetic/MHD hybrid code M3D-K. MHD simulations show repeated sawtooth cycles due to a resistive (1,1) internal kink mode for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in plasma core depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with previous theory. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases as particle energy becomes large.

  8. M3D-K simulations of sawteeth and energetic particle transport in tokamak plasmas

    SciTech Connect

    Shen, Wei; Sheng, Zheng-Mao; Fu, G. Y.; Breslau, J. A.; Wang, Feng

    2014-09-15

    Nonlinear simulations of sawteeth and related energetic particle transport are carried out using the kinetic/magnetohydrodynamic (MHD) hybrid code M3D-K. MHD simulations show repeated sawtooth cycles for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in the plasma core, depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with existing theories. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases with increasing particle energy.

  9. Coherent pulses in the diffusive transport of charged particles`

    NASA Technical Reports Server (NTRS)

    Kota, J.

    1994-01-01

    We present exact solutions to the diffusive transport of charged particles following impulsive injection for a simple model of scattering. A modified, two-parameter relaxation-time model is considered that simulates the low rate of scattering through perpendicular pitch-angle. Scattering is taken to be isotropic within each of the foward- and backward-pointing hemispheres, respectively, but, at the same time, a reduced rate of sccattering is assumed from one hemisphere to the other one. By applying a technique of Fourier- and Laplace-transform, the inverse transformation can be performed and exact solutions can be reached. By contrast with the first, and so far only exact solutions of Federov and Shakov, this wider class of solutions gives rise to coherent pulses to appear. The present work addresses omnidirectional densities for isotropic injection from an instantaneous and localized source. The dispersion relations are briefly discussed. We find, for this particular model, two diffusive models to exist up to a certain limiting wavenumber. The corresponding eigenvalues are real at the lowest wavenumbers. Complex eigenvalues, which are responsible for coherent pulses, appear at higher wavenumbers.

  10. Forced transport of self-propelled particles in a two-dimensional separate channel

    NASA Astrophysics Data System (ADS)

    Wu, Jian-Chun; Ai, Bao-Quan

    2016-04-01

    Transport of self-propelled particles in a two-dimensional (2D) separate channel is investigated in the presence of the combined forces. By applying an ac force, the particles will be trapped by the separate walls. A dc force produces the asymmetry of the system and induces the longitudinal directed transport. Due to the competition between self-propulsion and the combined external forces, the transport is sensitive to the self-propelled speed and the particle radius, thus one can separate the particles based on these properties.

  11. Forced transport of self-propelled particles in a two-dimensional separate channel

    PubMed Central

    Wu, Jian-chun; Ai, Bao-quan

    2016-01-01

    Transport of self-propelled particles in a two-dimensional (2D) separate channel is investigated in the presence of the combined forces. By applying an ac force, the particles will be trapped by the separate walls. A dc force produces the asymmetry of the system and induces the longitudinal directed transport. Due to the competition between self-propulsion and the combined external forces, the transport is sensitive to the self-propelled speed and the particle radius, thus one can separate the particles based on these properties. PMID:27035860

  12. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1992-12-31

    Particle and energy transport in tokamak plasmas have long been subjects of vigorous investigation. Present-day measurement techniques permit radially resolved studies of the transport of electron perturbations, low- and high-Z impurities, and energy. In addition, developments in transport theory provide tools that can be brought to bear on transport issues. Here, we examine local particle transport measurements of electrons, fully-stripped thermal helium, and helium-like iron in balanced-injection L-mode and enhanced confinement deuterium plasmas on TFTR of the same plasma current, toroidal field, and auxiliary heating power. He{sup 2{plus}} and Fe{sup 24{plus}} transport has been studied with charge exchange recombination spectroscopy, while electron transport has been studied by analyzing the perturbed electron flux following the same helium puff used for the He{sup 2{plus}} studies. By examining the electron and He{sup 2{plus}} responses following the same gas puff in the same plasmas, an unambiguous comparison of the transport of the two species has been made. The local energy transport has been examined with power balance analysis, allowing for comparisons to the local thermal fluxes. Some particle and energy transport results from the Supershot have been compared to a transport model based on a quasilinear picture of electrostatic toroidal drift-type microinstabilities. Finally, implications for future fusion reactors of the observed correlation between thermal transport and helium particle transport is discussed.

  13. Flow and particle dispersion in a pulmonary alveolus--part II: effect of gravity on particle transport.

    PubMed

    Chhabra, Sudhaker; Prasad, Ajay K

    2010-05-01

    The acinar region of the human lung comprises about 300x10(6) alveoli, which are responsible for gas exchange between the lung and the blood. As discussed in Part I (Chhabra and Prasad, "Flow and Particle Dispersion in a Pulmonary Alveolus-Part I: Velocity Measurements and Convective Particle Transport," ASME J. Biomech. Eng., 132, p. 051009), the deposition of aerosols in the acinar region can either be detrimental to gas exchange (as in the case of harmful particulate matter) or beneficial (as in the case of inhalable pharmaceuticals). We measured the flow field inside an in-vitro model of a single alveolus mounted on a bronchiole and calculated the transport and deposition of massless particles in Part I. This paper focuses on the transport and deposition of finite-sized particles ranging from 0.25 microm to 4 microm under the combined influence of flow-induced advection (computed from velocity maps obtained by particle image velocimetry) and gravitational settling. Particles were introduced during the first inhalation cycle and their trajectories and deposition statistics were calculated for subsequent cycles for three different particle sizes (0.25 microm, 1 microm, and 4 microm) and three alveolar orientations. The key outcome of the study is that particles particles (d(p)=1 microm) deviate to some extent from streamlines and exhibit complex trajectories. The motion of large particles >or=4 microm is dominated by gravitational settling and shows little effect of fluid advection. Additionally, small and midsize particles deposit at about two-thirds height in the alveolus irrespective of the gravitational orientation whereas the deposition of large particles is governed primarily by the orientation of the gravity vector. PMID:20459211

  14. The persistence, transport and health effects of regional ultrafine particles

    NASA Astrophysics Data System (ADS)

    Spada, Nicholas James

    Due to the multitude of health studies that have shown the ability of ultrafine particles (UFPs, DP < 100 nm) to penetrate deep into lung tissue, diffuse into the bloodstream, and eventually cause heart and lung disease, my thesis will focus on these effectively unmonitored airborne pollutants. UFPs are commonly detected near busy roadways and other high-temperature combustion sources in the form of heavy metals (copper, lead, zinc, iron) and toxic organics (benzo{a}pyrene, coronene). Studies of UFPs during the 1970s expressed a nucleic propensity for coagulation and growth. Because many of the UFPs studied were generated from heavy-duty diesel engines operating with ≥0.3 wt % sulfur, the resulting sulfur-containing UFPs were hydrophilic and water vapor readily condensed on the generated nuclei. Due to their increased size, UFPs tend to settle out of air streams quickly; thus, limiting their impact regime to near-roadway influence and labeling them as local pollutants. By using highly size- and time-resolved impactors with TeflonRTM ultrafine after-filters (targeting DP < 90 nm), new evidence suggests the persistence of UFPs for greater periods of time and transport than previously predicted. Techniques developed during the Roseville rail yard study, refined during the Watt Ave/Arden Way study and applied across California's central valley have shown low levels of UFPs in a regional background. For cities in constrictive topography and meteorology (such as Bakersfield, Fresno and Los Angeles), winter inversions and stagnant weather can saturate the region with ultrafine heavy metals and carcinogenic organics, similar to the disasters during the middle of the last century.

  15. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1992-01-01

    Particle and energy transport in tokamak plasmas have long been subjects of vigorous investigation. Present-day measurement techniques permit radially resolved studies of the transport of electron perturbations, low- and high-Z impurities, and energy. In addition, developments in transport theory provide tools that can be brought to bear on transport issues. Here, we examine local particle transport measurements of electrons, fully-stripped thermal helium, and helium-like iron in balanced-injection L-mode and enhanced confinement deuterium plasmas on TFTR of the same plasma current, toroidal field, and auxiliary heating power. He[sup 2[plus

  16. Ciliary intraflagellar transport protein 80 balances canonical versus non-canonical hedgehog signaling for osteoblast differentiation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mutation of different IFT proteins cause numerous different clinical bone disorders accompanied with or without the disruption of cilia formation. Currently, there is no any effective treatment for these disorders due to lack of understanding in the function and mechanism of these proteins. IFT80 is...

  17. WDR19: An ancient, retrograde, intraflagellar ciliary protein is mutated in autosomal recessive retinitis pigmentosa and in Senior-Loken syndrome

    PubMed Central

    Coussa, RG; Otto, EA; Gee, H-Y; Arthurs, P; Ren, H; Lopez, I; Keser, V; Fu, Q; Faingold, R; Khan, A; Schwartzentruber, J; Majewski, J; Hildebrandtand, F; Koenekoop, RK

    2014-01-01

    Autosomal recessive retinitis pigmentosa (arRP) is a clinically and genetically heterogeneous retinal disease that causes blindness. Our purpose was to identify the causal gene, describe the phenotype and delineate the mutation spectrum in a consanguineous Quebec arRP family. We performed Arrayed Primer Extension (APEX) technology to exclude ~500 arRP mutations in ~20 genes. Homozygosity mapping [single nucleotide polymorphism (SNP) genotyping] identified 10 novel significant homozygous regions. We performed next generation sequencing and whole exome capture. Sanger sequencing provided cosegregation. We screened another 150 retinitis pigmentosa (RP) and 200 patients with Senior-Løken Syndrome (SLS). We identified a novel missense mutation in WDR19, c.2129T>C which lead to a p.Leu710Ser. We found the same mutation in a second Quebec arRP family. Interestingly, two of seven affected members of the original family developed ‘sub-clinical’ renal cysts. We hypothesized that more severe WDR19 mutations may lead to severe ciliopathies and found seven WDR19 mutations in five SLS families. We identified a new gene for both arRP and SLS. WDR19 is a ciliary protein associated with the intraflagellar transport machinery. We are currently investigating the full extent of the mutation spectrum. Our findings are crucial in expanding the understanding of childhood blindness and identifying new genes. PMID:23683095

  18. Turbulent transport of alpha particles in reactor plasmas

    SciTech Connect

    Estrada-Mila, C.; Candy, J.; Waltz, R. E.

    2006-11-15

    A systematic study of the behavior of energetic ions in reactor plasmas is presented. Using self-consistent gyrokinetic simulations, in concert with an analytic asymptotic theory, it is found that alpha particles can interact significantly with core ion-temperature-gradient turbulence. Specifically, the per-particle flux of energetic alphas is comparable to the per-particle flux of thermal species (deuterium or helium ash). This finding opposes the conventional wisdom that energetic ions, because of their large gyroradii, do not interact with the turbulence. For the parameters studied, a turbulent modification of the alpha-particle density profile appears to be stronger than turbulent modification of the alpha-particle pressure profile. Crude estimates indicate that the alpha density modification, which is directly proportional to the core turbulence intensity, could be in the range of 15% at midradius in a reactor. The corresponding modification of the alpha-particle pressure profile is predicted to be smaller (in the 1% range)

  19. Suspended load and bed-load transport of particle-laden gravity currents: the role of particle-bed interaction

    NASA Astrophysics Data System (ADS)

    Dufek, J.; Bergantz, G. W.

    2007-03-01

    The development of particle-enriched regions (bed-load) at the base of particle-laden gravity currents has been widely observed, yet the controls and relative partitioning of material into the bed-load is poorly understood. We examine particle-laden gravity currents whose initial mixture (particle and fluid) density is greater than the ambient fluid, but whose interstitial fluid density is less than the ambient fluid (such as occurs in pyroclastic flows produced during volcanic eruptions or when sediment-enriched river discharge enters the ocean, generating hyperpycnal turbidity currents). A multifluid numerical approach is employed to assess suspended load and bed-load transport in particle-laden gravity currents under varying boundary conditions. Particle-laden flows that traverse denser fluid (such as pyroclastic flows crossing water) have leaky boundaries that provide the conceptual framework to study suspended load in isolation from bed-load transport. We develop leaky and saltation boundary conditions to study the influence of flow substrate on the development of bed-load. Flows with saltating boundaries develop particle-enriched basal layers (bed-load) where momentum transfer is primarily a result of particle-particle collisions. The grain size distribution is more homogeneous in the bed-load and the saltation boundaries increase the run-out distance and residence time of particles in the flow by as much as 25% over leaky boundary conditions. Transport over a leaky substrate removes particles that reach the bottom boundary and only the suspended load remains. Particle transport to the boundary is proportional to the settling velocity of particles, and flow dilution results in shear and buoyancy instabilities at the upper interface of these flows. These instabilities entrain ambient fluid, and the continued dilution ultimately results in these currents becoming less dense than the ambient fluid. A unifying concept is energy dissipation due to particle

  20. Transport and Retention of Engineered Nanoporous Particles in Porous Media: Effects of Concentration and Flow Dynamics

    SciTech Connect

    Shang, Jianying; Liu, Chongxuan; Wang, Zheming

    2013-01-20

    Engineered nanoporous particles are an important class of nano-structured materials that can be functionalized in their internal surfaces for various applications including groundwater contaminant sequestration. This paper reported a study of transport and retention of engineered nanoporous silicate particles (ENSPs) that are designed for treatment and remediation of contaminants such as uranium in groundwater and sediments. The transport and retention of ENSPs were investigated under variable particle concentrations and dynamic flow conditions in a synthetic groundwater that mimics field groundwater chemical composition. The dynamic flow condition was achieved using a flow-interruption (stop-flow) approach with variable stop-flow durations to explore particle retention and release kinetics. The results showed that the ENSPs transport was strongly affected by the particle concentrations and dynamic flow conditions. A lower injected ENSPs concentration and longer stop-flow duration led to a more particle retention. The experimental data were used to evaluate the applicability of various kinetic models that were developed for colloidal particle retention and release in describing ENSPs transport. Model fits suggested that the transport and retention of ENSPs were subjected to a complex coupling of reversible attachment/detachment and straining/liberation processes. Both experimental and modeling results indicated that dynamic groundwater flow condition is an important parameter to be considered in exploring and modeling engineered particle transport in subsurface porous media.

  1. Particle Transport and Energization Associated with Disturbed Magnetospheric Events

    SciTech Connect

    C.Z. Cheng; J.R. Johnson; S. Zaharia

    1999-11-01

    Energetic particle flux enhancement events observed by satellites during strongly disturbed events in the magnetosphere (e.g., substorms, storm sudden commencements, etc.) are studied by considering interaction of particles with Earthward propagating electromagnetic pulses of westward electric field and consistent magnetic field of localized radial and azimuthal extent in a background magnetic field. The energetic particle flux enhancement is mainly due to the betatron acceleration process: particles are swept by the Earthward propagating electric field pulses via the EXB drift toward the Earth to higher magnetic field locations and are energized because of magnetic moment conservation. The most energized particles are those which stay in the pulse for the longest time and are swept the longest radial distance toward the Earth. Assuming a constant propagating velocity of the pulse we obtain analytical solutions of particle orbits. We examine substorm energetic particle injection by computing the particle flux and comparing with geosynchronous satellite observations. Our results show that for pulse parameters leading to consistency with observed flux values, the bulk of the injected particles arrive from distances less than 9 R(subscript E), which is closer to the Earth than the values obtained by the previous model and is also closer to the distances obtained by the injection boundary model.

  2. Molecular approach to intracellular cargo transport

    NASA Astrophysics Data System (ADS)

    Yildiz, Ahmet

    2010-03-01

    Landmark discoveries in the study of cytoplasmic motors have been made through advances in single molecule biophysics and detailed mechanistic models exist for kinesin and dynein. However, the function of motors in physiological conditions has not been carefully tested. In cells, more than few dyneins can attach to the same cargo and interact with the opposite polarity motors of kinesin. To study the molecular crosstalk between the motors, we have used intraflagellar transport (IFT) in Chlamydomonas reinhardtii as a model system. Ultrahigh spatio-temporal tracking of single cargo movement showed that IFT particles move for long distances unidirectionally with 8 nm increments, agreeing with measured step sizes of kinesin and dynein. To measure how many motors transport each cargo, we have linked large polystyrene beads to internal IFT particles through a transmembrane protein. Force measurements indicated that, on average, 3-4 motors transport cargoes in each direction. The results showed that IFT motors are tightly coordinated and might be involved in recycling each other to the appropriate end of the flagellum.

  3. Airflow, transport and regional deposition of aerosol particles during chronic bronchitis of human central airways.

    PubMed

    Farkhadnia, Fouad; Gorji, Tahereh B; Gorji-Bandpy, Mofid

    2016-03-01

    In the present study, the effects of airway blockage in chronic bronchitis disease on the flow patterns and transport/deposition of micro-particles in a human symmetric triple bifurcation lung airway model, i.e., Weibel's generations G3-G6 was investigated. A computational fluid and particle dynamics model was implemented, validated and applied in order to evaluate the airflow and particle transport/deposition in central airways. Three breathing patterns, i.e., resting, light activity and moderate exercise, were considered. Using Lagrangian approach for particle tracking and random particle injection, an unsteady particle tracking method was performed to simulate the transport and deposition of micron-sized aerosol particles in human central airways. Assuming laminar, quasi-steady, three-dimensional air flow and spherical non-interacting particles in sequentially bifurcating rigid airways, airflow patterns and particle transport/deposition in healthy and chronic bronchitis (CB) affected airways were evaluated and compared. Comparison of deposition efficiency (DE) of aerosols in healthy and occluded airways showed that at the same flow rates DE values are typically larger in occluded airways. While in healthy airways, particles deposit mainly around the carinal ridges and flow dividers-due to direct inertial impaction, in CB affected airways they deposit mainly on the tubular surfaces of blocked airways because of gravitational sedimentation. PMID:26541595

  4. Transport of airborne particles in straight and curved microchannels

    NASA Astrophysics Data System (ADS)

    Schaap, Allison; Chu, Winnie C.; Stoeber, Boris

    2012-08-01

    The measurement of airborne particles is important for environmental and exposure monitoring. Microfluidic technologies present potential advantages for aerosol monitoring but have been applied very little to the handling of airborne particles. In this paper, we examine the flow focusing and cross-streamline diffusion of aerosols in straight microchannels, and the size-based lateral displacement of aerosols caused by centrifugal forces in a curved channel. We present calculations, simulations, and experimental results verifying the models: measurements of the focusing and diffusion of 0.2 μm and 0.75 μm particles in straight channels and of the size-dependent lateral displacement of particles between 0.2 μm and 2 μm in curved channels are demonstrated and shown to match well with the simulations. We observe lateral dispersion of the particles: particles closer to the top and bottom wall of the channel experience less lateral displacement than particles near the center due to the flow velocity distribution across the channel cross section. These results confirm that the microchannel techniques presented are a viable method for the size-based manipulation of airborne particles.

  5. Transport of inertial particles in a turbulent premixed jet flame

    NASA Astrophysics Data System (ADS)

    Battista, F.; Picano, F.; Troiani, G.; Casciola, C. M.

    2011-12-01

    The heat release, occurring in reacting flows, induces a sudden fluid acceleration which particles follow with a certain lag, due to their finite inertia. Actually, the coupling between particle inertia and the flame front expansion strongly biases the spatial distribution of the particles, by inducing the formation of localized clouds with different dimensions downstream the thin flame front. A possible indicator of this preferential localization is the so-called Clustering Index, quantifying the departure of the actual particle distribution from the Poissonian, which would correspond to a purely random spatial arrangement. Most of the clustering is found in the flame brush region, which is spanned by the fluctuating instantaneous flame front. The effect is significant also for very light particles. In this case a simple model based on the Bray-Moss-Libby formalism is able to account for most of the deviation from the Poissonian. When the particle inertia increases, the effect is found to increases and persist well within the region of burned gases. The effect is maximum when the particle relaxation time is of the order of the flame front time scale. The evidence of this peculiar source of clustering is here provided by data from a direct numerical simulation of a turbulent premixed jet flame and confirmed by experimental data.

  6. Co-transport of Pseudomonas putida and kaolinite colloid particles through water saturated porous media

    NASA Astrophysics Data System (ADS)

    Vasiliadou, I. A.; Chrysikopoulos, C. V.

    2009-04-01

    Groundwater contamination is often associated with the presence of dissolved contaminants and/or suspended particles, which are either harmful biocolloids or toxic substances sorbed onto colloid particles. The present study focuses on the transport of bacteria in porous media in the presence of suspended kaolinite colloid particles. The bacteria used are the species Pseudomonas putida. Batch sorption experiments were conducted to investigate the adsorption of Pseudomonas putida onto the surfaces of kaolinite particles. The results from the batch experiments indicate that Pseudomonas putida significantly adsorbed onto kaolinite colloid particles. The adsorption process is adequately described by a Langmuir type isotherm. Transport experiments were conducted under various flow conditions in water saturated columns packed with glass beads. Initial flowthrough experiments were performed with bacteria and kaolinite alone in order to better understand their individual transport characteristics. Finally, Pseudomonas putida and kaolinite colloid particles were injected simultaneously into the packed column in order to investigate their co-transport behavior. The flowthrough experimental data suggest that the presence of the clay particles significantly inhibit the transport of bacteria in water saturated porous media. The observed reduction of Pseudomonas putida recovery at the packed column exit is mainly attributed to the attachment of bacteria onto kaolinite particles, which are adsorbed onto the solid matrix of the column.

  7. Transport and Attenuation of Particles of Different Density and Surface Charge: A Karst Aquifer Field Study.

    PubMed

    Schiperski, Ferry; Zirlewagen, Johannes; Scheytt, Traugott

    2016-08-01

    Although karst aquifers are far more susceptible to contamination than porous aquifers, with the transport of particulate matter being an important factor, little is known about the attenuation of solutes within karst aquifers and even less about the attenuation of particulate matter. These in situ investigations have therefore aimed to systematically identify the processes that influence the transport and attenuation of particles within a karst aquifer through multitracer testing, using four different types of 1 μm fluorescent particles and the fluorescent dye uranine. Each of the types of particles used were detected at the observed spring, which drains the investigated aquifer. However, the transport behavior varied significantly between the various particles and the uranine dye, with the breakthrough of particles occurring slightly earlier than that of uranine. Attenuation was determined from the tracer recovery and attributed to filtration processes. These processes were affected by the hydrophobicity and surface charge of the particles. Carboxylated polystyrene particles with a density and surface charge comparable to pathogenic microorganisms were found to be mobile in groundwater over a distance of about 3 km. No attenuation was observed for plain silica particles. Particles with these characteristics thus pose a major threat to karst spring water as they might occur as contaminants themselves or facilitate the transport of other contaminants. PMID:27348254

  8. The role of particle collisions in pneumatic transport

    NASA Technical Reports Server (NTRS)

    Mastorakos, E.; Louge, M.; Jenkins, J. T.

    1989-01-01

    A model of dilute gas-solid flow in vertical risers is developed in which the particle phase is treated as a granular material, the balance equations for rapid granular flow are modified to incorporate the drag force from the gas, and boundary conditions, based on collisional exchanges of momentum and energy at the wall, are employed. In this model, it is assumed that the particle fluctuations are determined by inter-particle collisions only and that the turbulence of the gas is unaffected by the presence of the particles. The model is developed in the context of, but not limited to, steady, fully developed flow. A numerical solution of the resulting governing equations provides concentration profiles generally observed in dilute pneumatic flow, velocity profiles in good agreement with the measurements of Tsuji, et al. (1984), and an explanation for the enhancement of turbulence that they observed.

  9. Small particle transport across turbulent nonisothermal boundary layers

    NASA Technical Reports Server (NTRS)

    Rosner, D. E.; Fernandez De La Mora, J.

    1982-01-01

    The interaction between turbulent diffusion, Brownian diffusion, and particle thermophoresis in the limit of vanishing particle inertial effects is quantitatively modeled for applications in gas turbines. The model is initiated with consideration of the particle phase mass conservation equation for a two-dimensional boundary layer, including the thermophoretic flux term directed toward the cold wall. A formalism of a turbulent flow near a flat plate in a heat transfer problem is adopted, and variable property effects are neglected. Attention is given to the limit of very large Schmidt numbers and the particle concentration depletion outside of the Brownian sublayer. It is concluded that, in the parameter range of interest, thermophoresis augments the high Schmidt number mass-transfer coefficient by a factor equal to the product of the outer sink and the thermophoretic suction.

  10. Investigating the role of particle shape on colloid transport and retention in saturated porous media (Invited)

    NASA Astrophysics Data System (ADS)

    Li, Y.; Seymour, M.; Chen, G.; Su, C.

    2011-12-01

    Mechanistic understanding of the transport and retention of nanoparticles in porous media is essential both for environmental applications of nanotechnology and assessing the potential environmental impacts of engineered nanomaterials. Engineered and naturally occurring nanoparticles can be found in various shapes including rod-shape carbon nanotubes that have high aspect ratios. Although it is expected that nonspherical shape could play an important role on their transport and retention behaviors, current theoretical models for particle transport in porous media, however, are mostly based on spherical particle shape. In this work, the effect of particle shape on its transport and retention in porous media was evaluated by stretching carboxylate-modified fluorescent polystyrene spheres into rod shapes with aspect ratios of 2:1 and 4:1. Quartz crystal microbalance with dissipation experiments (QCM-D) were conducted to measure the deposition rates of spherical and rod-shaped nanoparticles to the collector (poly-L-lysine coated silica sensor) surface under favorable conditions. Under unfavorable conditions, the retention of nanoparticles in a microfluidic flow cell packed with glass beads was studied with the use of laser scanning cytometry (LSC). Under favorable conditions, the spherical particles displayed a significantly higher deposition rate compared with that of the rod-shaped particles. Theoretical analysis based on Smoluchowski-Levich approximation indicated that the rod-shaped particles largely counterbalance the attractive energies due to higher hydrodynamic forces and torques experienced during their transport and rotation. Under unfavorable conditions, significantly more attachment was observed for rod-shaped particles than spherical particles, and the attachment rate of the rod-shaped particles showed an increasing trend with the increase in injection volume. Rod-shaped particles were found to be less sensitive to the surface charge heterogeneity change

  11. Investigating the role of particle shape on colloid transport and retention in saturated porous media (Invited)

    NASA Astrophysics Data System (ADS)

    Li, Y.; Seymour, M.; Chen, G.; Su, C.

    2013-12-01

    Mechanistic understanding of the transport and retention of nanoparticles in porous media is essential both for environmental applications of nanotechnology and assessing the potential environmental impacts of engineered nanomaterials. Engineered and naturally occurring nanoparticles can be found in various shapes including rod-shape carbon nanotubes that have high aspect ratios. Although it is expected that nonspherical shape could play an important role on their transport and retention behaviors, current theoretical models for particle transport in porous media, however, are mostly based on spherical particle shape. In this work, the effect of particle shape on its transport and retention in porous media was evaluated by stretching carboxylate-modified fluorescent polystyrene spheres into rod shapes with aspect ratios of 2:1 and 4:1. Quartz crystal microbalance with dissipation experiments (QCM-D) were conducted to measure the deposition rates of spherical and rod-shaped nanoparticles to the collector (poly-L-lysine coated silica sensor) surface under favorable conditions. Under unfavorable conditions, the retention of nanoparticles in a microfluidic flow cell packed with glass beads was studied with the use of laser scanning cytometry (LSC). Under favorable conditions, the spherical particles displayed a significantly higher deposition rate compared with that of the rod-shaped particles. Theoretical analysis based on Smoluchowski-Levich approximation indicated that the rod-shaped particles largely counterbalance the attractive energies due to higher hydrodynamic forces and torques experienced during their transport and rotation. Under unfavorable conditions, significantly more attachment was observed for rod-shaped particles than spherical particles, and the attachment rate of the rod-shaped particles showed an increasing trend with the increase in injection volume. Rod-shaped particles were found to be less sensitive to the surface charge heterogeneity change

  12. Smoothed Particle Hydrodynamics Model for Reactive Transport and Mineral Precipitation

    SciTech Connect

    Tartakovsky, Alexandre M.; Scheibe, Timothy D.; Redden, George; Meakin, Paul; Fang, Yilin

    2006-06-30

    A new Lagrangian particle model based on smoothed particle hydrodynamics was used to simulate pore scale precipitation reactions. The side-by-side injection of reacting solutions into two halves of a two-dimensional granular porous medium was simulated. Precipitation on grain surfaces occurred along a narrow zone in the middle of the domain, where the reacting solutes mixed to generate a supersaturated reaction product. The numerical simulations qualitatively reproduced the behavior observed in related laboratory experiments.

  13. Single Particle Tracking Reveals Biphasic Transport During Nanorod Magnetophoresis Through Extracellular Matrix

    PubMed Central

    Mair, L.O.; Superfine, R.

    2014-01-01

    Magnetic drug targeting has been proposed as a means of efficiently targeting drugs to tumors. However, the extracellular matrix (ECM) remains a significant barrier to long-range magnetophoretic transport through the tumor volume. While ensemble measurements of nanoparticle magnetophoresis have been reported, a single particle level understanding of magnetophoretic transport remains at large. We quantify nanorod magnetophoresis through ECM based on single particle observations. We find that smaller diameter particles achieve larger velocities through ECM despite experiencing smaller magnetic forces. Additionally, two interesting dynamics are elucidated. First, 18 nm diameter nanorods experience bimodal stick-slip motion through ECM during static field magnetophoresis, while similar bimodal transport is not observed for 55 nm nor 200 nm diameter nanorods. Second, smaller particles experience larger deviations in their orientation angle with respect to the magnetic field. This work elucidates important dynamics of nanoparticle transport through complex, porous biomaterials that may go unnoticed during ensemble measurements. PMID:24744160

  14. Review of the facile (F/sub N/) method in particle transport theory

    SciTech Connect

    Garcia, R.D.M.

    1985-10-01

    The facile (F/sub N/) method for solving particle transport problems is reviewed. The fundamentals of the method are summarized, recent developments are discussed and several applications of the method are described in detail.

  15. Modeling particle transport by bubbles for performance guidelines in airlift fermentors.

    PubMed

    Snape, J B; Thomas, N H

    1992-07-01

    A calculation method has been developed to model the statistical transport of biological particles in bubble-driven flows, with special reference to the biokinetics of environmental excursions experienced by individual cells, aggregated cells, or immobilization beads in airlift bioreactors. Interim developments on modeling the transport of such particles in concentric tube devices are reported. The calculation is driven by user-prescribed global parameters for the bioreactor geometry, bulk air flow rate, and particle parameters (size and slip speed). The algorithm calls on empirical data correlations for void fraction, bulk liquid flow rate, and bubble sizes and slip speeds, optimally selected from a large bibliographic database. The Monte Carlo algorithm concentrates on simulating particle transport in the bubbly riser flows.The packaged family of correlations and calculations represents, in effect, an expert system augmented by a transport simulation suited to characterizing the biokinetic response of cells cultured in airlift bioreactors. PMID:18601123

  16. Changes in particle transport as a result of resonant magnetic perturbations in DIII-D

    SciTech Connect

    Mordijck, S.; Doyle, E. J.; McKee, G. R.; Moyer, R.A.; Rhodes, T. L.; Zeng, L.; Commaux, Nicolas JC; Fenstermacher, M. E.; Gentle, T. K.; Reimerdes, H.; Schmitz, O.; Solomon, W. M.; Staebler, G. M.; Wang, G. Y.

    2012-01-01

    In this paper, we introduce the first direct perturbed particle transport measurements in resonant magnetic perturbation (RMP) H-mode plasmas. The perturbed particle transport increases as a result of application of RMP deep into the core. In the core, a large reduction in E x B shear to a value below the linear growth rate, in conjunction with increasing density fluctuations, is consistent with an increase in turbulent particle transport. In the edge, the changes in turbulent particle transport are less obvious. There is a clear correlation between the linear growth rates and the density fluctuations measured at different scales, but it is uncertain which is the cause and which is the consequence.

  17. Changes in particle transport as a result of resonant magnetic perturbations in DIII-D

    SciTech Connect

    Mordijck, S.; Doyle, E. J.; Rhodes, T. L.; Zeng, L.; Wang, G.; McKee, G. R.; Moyer, R. A.; Commaux, N.; Fenstermacher, M. E.; Gentle, K. W.; Reimerdes, H.; Schmitz, O.; Solomon, W. M.; Staebler, G. M.

    2012-05-15

    In this paper, we introduce the first direct perturbed particle transport measurements in resonant magnetic perturbation (RMP) H-mode plasmas. The perturbed particle transport increases as a result of application of RMP deep into the core. In the core, a large reduction in E Multiplication-Sign B shear to a value below the linear growth rate, in conjunction with increasing density fluctuations, is consistent with an increase in turbulent particle transport. In the edge, the changes in turbulent particle transport are less obvious. There is a clear correlation between the linear growth rates and the density fluctuations measured at different scales, but it is uncertain which is the cause and which is the consequence.

  18. DANTSYS: A diffusion accelerated neutral particle transport code system

    SciTech Connect

    Alcouffe, R.E.; Baker, R.S.; Brinkley, F.W.; Marr, D.R.; O`Dell, R.D.; Walters, W.F.

    1995-06-01

    The DANTSYS code package includes the following transport codes: ONEDANT, TWODANT, TWODANT/GQ, TWOHEX, and THREEDANT. The DANTSYS code package is a modular computer program package designed to solve the time-independent, multigroup discrete ordinates form of the boltzmann transport equation in several different geometries. The modular construction of the package separates the input processing, the transport equation solving, and the post processing (or edit) functions into distinct code modules: the Input Module, one or more Solver Modules, and the Edit Module, respectively. The Input and Edit Modules are very general in nature and are common to all the Solver Modules. The ONEDANT Solver Module contains a one-dimensional (slab, cylinder, and sphere), time-independent transport equation solver using the standard diamond-differencing method for space/angle discretization. Also included in the package are solver Modules named TWODANT, TWODANT/GQ, THREEDANT, and TWOHEX. The TWODANT Solver Module solves the time-independent two-dimensional transport equation using the diamond-differencing method for space/angle discretization. The authors have also introduced an adaptive weighted diamond differencing (AWDD) method for the spatial and angular discretization into TWODANT as an option. The TWOHEX Solver Module solves the time-independent two-dimensional transport equation on an equilateral triangle spatial mesh. The THREEDANT Solver Module solves the time independent, three-dimensional transport equation for XYZ and RZ{Theta} symmetries using both diamond differencing with set-to-zero fixup and the AWDD method. The TWODANT/GQ Solver Module solves the 2-D transport equation in XY and RZ symmetries using a spatial mesh of arbitrary quadrilaterals. The spatial differencing method is based upon the diamond differencing method with set-to-zero fixup with changes to accommodate the generalized spatial meshing.

  19. Directed Magnetic Particle Transport above Artificial Magnetic Domains Due to Dynamic Magnetic Potential Energy Landscape Transformation.

    PubMed

    Holzinger, Dennis; Koch, Iris; Burgard, Stefan; Ehresmann, Arno

    2015-07-28

    An approach for a remotely controllable transport of magnetic micro- and/or nanoparticles above a topographically flat exchange-bias (EB) thin film system, magnetically patterned into parallel stripe domains, is presented where the particle manipulation is achieved by sub-mT external magnetic field pulses. Superparamagnetic core-shell particles are moved stepwise by the dynamic transformation of the particles' magnetic potential energy landscape due to the external magnetic field pulses without affecting the magnetic state of the thin film system. The magnetic particle velocity is adjustable in the range of 1-100 μm/s by the design of the substrate's magnetic field landscape (MFL), the particle-substrate distance, and the magnitude of the applied external magnetic field pulses. The agglomeration of magnetic particles is avoided by the intrinsic magnetostatic repulsion of particles due to the parallel alignment of the particles' magnetic moments perpendicular to the transport direction and parallel to the surface normal of the substrate during the particle motion. The transport mechanism is modeled by a quantitative theory based on the precise knowledge of the sample's MFL and the particle-substrate distance. PMID:26134922

  20. Third-order TRANSPORT: A computer program for designing charged particle beam transport systems

    SciTech Connect

    Carey, D.C.; Brown, K.L.; Rothacker, F.

    1995-05-01

    TRANSPORT has been in existence in various evolutionary versions since 1963. The present version of TRANSPORT is a first-, second-, and third-order matrix multiplication computer program intended for the design of static-magnetic beam transport systems. This report discusses the following topics on TRANSPORT: Mathematical formulation of TRANSPORT; input format for TRANSPORT; summaries of TRANSPORT elements; preliminary specifications; description of the beam; physical elements; other transformations; assembling beam lines; operations; variation of parameters for fitting; and available constraints -- the FIT command.

  1. Particle tracking approach for transport in three-dimensional discrete fracture networks: Particle tracking in 3-D DFNs

    DOE PAGESBeta

    Makedonska, Nataliia; Painter, Scott L.; Bui, Quan M.; Gable, Carl W.; Karra, Satish

    2015-09-16

    The discrete fracture network (DFN) model is a method to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. We present a new particle tracking capability, which is adapted to control volume (Voronoi polygons) flow solutions on unstructured grids (Delaunay triangulations) on three-dimensional DFNs. The locally mass-conserving finite-volume approach eliminates massmore » balance-related problems during particle tracking. The scalar fluxes calculated for each control volume face by the flow solver are used to reconstruct a Darcy velocity at each control volume centroid. The groundwater velocities can then be continuously interpolated to any point in the domain of interest. The control volumes at fracture intersections are split into four pieces, and the velocity is reconstructed independently on each piece, which results in multiple groundwater velocities at the intersection, one for each fracture on each side of the intersection line. This technique enables detailed particle transport representation through a complex DFN structure. Verified for small DFNs, the new simulation capability enables numerical experiments on advective transport in large DFNs to be performed. As a result, we demonstrate this particle transport approach on a DFN model using parameters similar to those of crystalline rock at a proposed geologic repository for spent nuclear fuel in Forsmark, Sweden.« less

  2. Particle tracking approach for transport in three-dimensional discrete fracture networks: Particle tracking in 3-D DFNs

    SciTech Connect

    Makedonska, Nataliia; Painter, Scott L.; Bui, Quan M.; Gable, Carl W.; Karra, Satish

    2015-09-16

    The discrete fracture network (DFN) model is a method to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. We present a new particle tracking capability, which is adapted to control volume (Voronoi polygons) flow solutions on unstructured grids (Delaunay triangulations) on three-dimensional DFNs. The locally mass-conserving finite-volume approach eliminates mass balance-related problems during particle tracking. The scalar fluxes calculated for each control volume face by the flow solver are used to reconstruct a Darcy velocity at each control volume centroid. The groundwater velocities can then be continuously interpolated to any point in the domain of interest. The control volumes at fracture intersections are split into four pieces, and the velocity is reconstructed independently on each piece, which results in multiple groundwater velocities at the intersection, one for each fracture on each side of the intersection line. This technique enables detailed particle transport representation through a complex DFN structure. Verified for small DFNs, the new simulation capability enables numerical experiments on advective transport in large DFNs to be performed. As a result, we demonstrate this particle transport approach on a DFN model using parameters similar to those of crystalline rock at a proposed geologic repository for spent nuclear fuel in Forsmark, Sweden.

  3. FACTORS IN GEOTROPOSPHERIC PARTICLE-GAS TRANSPORT OF SEMIVOLATILE ORGANIC COMPOUNDS

    EPA Science Inventory

    Semivolatile organic compounds (SVOCs) can exist in solid, liquid, or gas phases under ambient environmental conditions. The geotropospheric transport of SVOCs varies according to the particle type. Two classes of SVOCs and two types of particles were analyzed to determine possib...

  4. NANO-PARTICLE TRANSPORT AND DEPOSITION IN BIFURCATING TUBES WITH DIFFERENT INLET CONDITIONS

    EPA Science Inventory

    Transport and deposition of ultrafine particles in straight, bend and bifurcating tubes are considered for different inlet Reynolds numbers, velocity profiles, and particle sizes i.e., 1 nm= =150 nm. A commercial finite-volume code with user-supplied programs was validated with a...

  5. Collisional interactions of ring particles - The ballistic transport process

    NASA Astrophysics Data System (ADS)

    Ip, W.-H.

    1983-05-01

    The role of variations in the size distribution, optical depth, and surface composition of Saturnian ring material in the dynamics of production and recycling of dust particles in the whole ring system is examined. A simple Monte Carlo model incorporating the ballistic motion of small dust particles ejected by meteoroid impact as well as the inelastic collision of the ejected particles with the ring plane is presented. It is found that the redistribution of the ejected matter depends on the optical depth variation across the ring system and the initial ejection speed, and hence the scale length of random walk on the ring plane. For small values of the scale length, the ejecta would accumulate at positions of sharp change in optical depth. On the basis of this result, it is conjectured that the double-peaked feature observed for a number of narrow ringlets may be generated in this manner also.

  6. Transport of transient solar wind particles in Earth's cusps

    SciTech Connect

    Parks, G. K.; Lee, E.; Teste, A.; Wilber, M.; Lin, N.; Canu, P.; Dandouras, I.; Reme, H.; Fu, S. Y.; Goldstein, M. L.

    2008-08-15

    An important problem in space physics still not understood well is how the solar wind enters the Earth's magnetosphere. Evidence is presented that transient solar wind particles produced by solar disturbances can appear in the Earth's mid-altitude ({approx}5 R{sub E} geocentric) cusps with densities nearly equal to those in the magnetosheath. That these are magnetosheath particles is established by showing they have the same ''flattop'' electron distributions as magnetosheath electrons behind the bow shock. The transient ions are moving parallel to the magnetic field (B) toward Earth and often coexist with ionospheric particles that are flowing out. The accompanying waves include electromagnetic and broadband electrostatic noise emissions and Bernstein mode waves. Phase-space distributions show a mixture of hot and cold electrons and multiple ion species including field-aligned ionospheric O{sup +} beams.

  7. Using ACE and Ulysses to investigate the heliographic transport of energetic particles

    NASA Astrophysics Data System (ADS)

    Robinson, Ian M.

    2002-03-01

    The Advanced Composition Explorer (ACE) and the Ulysses spacecraft follow radically different trajectories, allowing the Sun to be simultaneously studied from 2 different perspectives. Data from the low energy particle instruments carried by these spacecraft reveals energetic particles accelerated at the Sun can access large angular extents of the interplanetary medium. We look at a rare case when the heliographic transport of energetic electrons was apparently prevented and speculate upon the ability of the corona to inhibit the propagation of these particles.

  8. Probabilistic description of particle transport. I. General theory of quasielastic scattering in plane-parallel media

    SciTech Connect

    Goulet, T.; Keszei, E.; Jay-Gerin, J.

    1988-03-15

    We present a three-dimensional probabilistic model of particle transport in a medium where the particles suffer quasielastic collisions. The model accounts for bulk and surface scattering, as well as partial reflections at the boundaries of the medium. We give analytical and numerical methods for the evaluation of the particle transmission probability in the case of a medium with a plane-parallel geometry. The influence of the various parameters of the model on this probability is also discussed.

  9. Sandia Computational Engine for Particle Transport for Radiation Effects v 1.4

    Energy Science and Technology Software Center (ESTSC)

    2014-01-24

    The SCEPTRE code solves the linear Boltzmann transport equation for general two- and three-dimensional geometries. SCEPTRE is capable of handling any particle type for which multigroup-Legendre cross sections are available. However, the code is designed primarily to model the transport of photons, electrons, and positrons through matter.

  10. Onset Times of Solar Particle Events Observed by MSL/RAD - Constraints on Particle Transport

    NASA Astrophysics Data System (ADS)

    Wimmer-Schweingruber, R. F.; Hassler, D. M.; Boettcher, S.; Martin, C.; Zeitlin, C.; Brinza, D.; Koehler, J.; Guo, J.; Posner, A.; Appel, J.

    2012-12-01

    En route to Mars, Mars Science Laboratory's (MSL's) Radiation Assessment Detector (RAD) was already operational and observed a number of solar particle events. These were also seen by an array of spacecraft in the heliosphere. This constellation provides an unique opportunity to investigate particle propagation in the ecliptic plane and thus constrain particle propagation models. RAD measures energetic ions up to approximately 100 MeV/nuc, but was buried deep inside the Mars Science Laboratory (MSL). Due to the significant shielding provided by the MSL cruise stage, back-shell, heat shield, and skycrane, RAD was sensitive to particles in a significantly higher and somewhat uncertain energy range. Even behind the aforementioned shielding, onset times of particle events can be clearly identified. In this work, we will provide them for the particle events observed by RAD in 2012. We will also relate them to other data and solar/interplanetary acceleration sites.

  11. Test particle study of ion transport in drift type turbulence

    SciTech Connect

    Vlad, M.; Spineanu, F.

    2013-12-15

    Ion transport regimes in drift type turbulence are determined in the frame of a realistic model for the turbulence spectrum based on numerical simulations. The model includes the drift of the potential with the effective diamagnetic velocity, turbulence anisotropy, and dominant waves. The effects of the zonal flow modes are also analyzed. A semi-analytical method that is able to describe trajectory stochastic trapping or eddying is used for obtaining the transport coefficients as function of the parameters of the turbulence. Analytical approximations of the transport coefficients are derived from the results. They show the transition from Bohm to gyro-Bohm scaling as plasma size increases in very good agreement with the numerical simulations.

  12. Influence of clay particles on the transport and retention of titanium dioxide nanoparticles in quartz sand.

    PubMed

    Cai, Li; Tong, Meiping; Wang, Xueting; Kim, Hyunjung

    2014-07-01

    This study investigated the influence of two representative suspended clay particles, bentonite and kaolinite, on the transport of titanium dioxide nanoparticles (nTiO2) in saturated quartz sand in both NaCl (1 and 10 mM ionic strength) and CaCl2 solutions (0.1 and 1 mM ionic strength) at pH 7. The breakthrough curves of nTiO2 with bentonite or kaolinite were higher than those without the presence of clay particles in NaCl solutions, indicating that both types of clay particles increased nTiO2 transport in NaCl solutions. Moreover, the enhancement of nTiO2 transport was more significant when bentonite was present in nTiO2 suspensions relative to kaolinite. Similar to NaCl solutions, in CaCl2 solutions, the breakthrough curves of nTiO2 with bentonite were also higher than those without clay particles, while the breakthrough curves of nTiO2 with kaolinite were lower than those without clay particles. Clearly, in CaCl2 solutions, the presence of bentonite in suspensions increased nTiO2 transport, whereas, kaolinite decreased nTiO2 transport in quartz sand. The attachment of nTiO2 onto clay particles (both bentonite and kaolinite) were observed under all experimental conditions. The increased transport of nTiO2 in most experimental conditions (except for kaolinite in CaCl2 solutions) was attributed mainly to the clay-facilitated nTiO2 transport. The straining of larger nTiO2-kaolinite clusters yet contributed to the decreased transport (enhanced retention) of nTiO2 in divalent CaCl2 solutions when kaolinite particles were copresent in suspensions. PMID:24911544

  13. Particle acceleration and transport in the solar atmosphere

    NASA Astrophysics Data System (ADS)

    Kontar, Eduard

    2016-07-01

    During periods of sporadic flare activity, the Sun releases energy stored in the magnetic field into the plasma of the solar atmosphere. This is an extremely efficient process, with a large fraction of the magnetic energy going into plasma particles. The solar flares are accompanied by prompt electromagnetic emission virtually over the entire electromagnetic spectrum from gamma-rays down to radio frequencies. The Sun, through its activity, also plays a driving role in the Sun-Earth system that substantially influences geophysical space. Solar flare energetic particles from the Sun are detected in interplanetary space by in-situ measurements making them a vital component of the single Sun-Earth system. Although a qualitative picture is generally agreed upon, many processes solar flare processes are poorly understood. Specifically, the processes of acceleration and propagation of energetic particles interacting on various physical scales remain major challenges in solar physics and basic plasma physics. In the talk, I will review the current understanding of solar flare energetic particles focusing on recent observational progress, which became possible due to the numerous spacecraft and ground-based observations.

  14. Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas

    SciTech Connect

    Ma, Kwan-Liu

    2011-12-21

    In this project, we have developed techniques for visualizing large-scale time-varying multivariate particle and field data produced by the GPS_TTBP team. Our basic approach to particle data visualization is to provide the user with an intuitive interactive interface for exploring the data. We have designed a multivariate filtering interface for scientists to effortlessly isolate those particles of interest for revealing structures in densely packed particles as well as the temporal behaviors of selected particles. With such a visualization system, scientists on the GPS-TTBP project can validate known relationships and temporal trends, and possibly gain new insights in their simulations. We have tested the system using over several millions of particles on a single PC. We will also need to address the scalability of the system to handle billions of particles using a cluster of PCs. To visualize the field data, we choose to use direct volume rendering. Because the data provided by PPPL is on a curvilinear mesh, several processing steps have to be taken. The mesh is curvilinear in nature, following the shape of a deformed torus. Additionally, in order to properly interpolate between the given slices we cannot use simple linear interpolation in Cartesian space but instead have to interpolate along the magnetic field lines given to us by the scientists. With these limitations, building a system that can provide an accurate visualization of the dataset is quite a challenge to overcome. In the end we use a combination of deformation methods such as deformation textures in order to fit a normal torus into their deformed torus, allowing us to store the data in toroidal coordinates in order to take advantage of modern GPUs to perform the interpolation along the field lines for us. The resulting new rendering capability produces visualizations at a quality and detail level previously not available to the scientists at the PPPL. In summary, in this project we have

  15. Transport theory for energetic alpha particles in finite aspect ratio tokamaks with broken symmetry

    NASA Astrophysics Data System (ADS)

    Shaing, K. C.; Schlutt, M.; Lai, A. L.

    2016-02-01

    Transport theory for the energetic alpha particles in finite aspect ratio tokamaks with broken symmetry is developed for the case where the slowing down collision operator dominates. The transport fluxes in the 1 /ν and superbanana plateau regimes are derived. Here, ν is the typical collision frequency. They can be used in modeling the energy loss of the alpha particles in thermonuclear fusion reactors. Numerical realizations of the superbanana orbits of alpha particles in tokamaks with broken symmetry are also presented. The existence of the superbananas corroborates the predictions of the theories presented here and elsewhere.

  16. Mechanism for Particle Transport and Size Sorting via Low-Frequency Vibrations

    NASA Technical Reports Server (NTRS)

    Sherrit, Stewart; Scott, James S.; Bar-Cohen, Yoseph; Badescu, Mircea; Bao, Xiaoqi

    2010-01-01

    There is a need for effective sample handling tools to deliver and sort particles for analytical instruments that are planned for use in future NASA missions. Specifically, a need exists for a compact mechanism that allows transporting and sieving particle sizes of powdered cuttings and soil grains that may be acquired by sampling tools such as a robotic scoop or drill. The required tool needs to be low mass and compact to operate from such platforms as a lander or rover. This technology also would be applicable to sample handling when transporting samples to analyzers and sorting particles by size.

  17. Observational and theoretical interpretation of energetic particle transport in solar flares

    NASA Astrophysics Data System (ADS)

    Daou, Antoun Georges

    The combination of excellent space-based remote sensing, and image reconstruction techniques, as well as improvements in numerical modeling, help enhance our understanding of particle transport in solar flares. We conduct a rigorous analysis of flare hard X-ray emission using the unprecedented spectral and spatial resolution of the RHESSI telescope data in order to better understand the spectral properties of the emitting electron population in solar flares. We complete our study with a forward-fit to the data using a Fokker- Planck kinetic code, to numerically model the particle transport in phase-space in realistic magnetic geometries and for different particle injection profiles.

  18. Particle transport in plasma systems for development of EUVL mask blanks

    NASA Astrophysics Data System (ADS)

    Stoltz, Peter; Likhanskii, Alex; Zhou, Chuandong; Jindal, Vibhu; Kearney, Patrick

    2012-11-01

    Defect transport in development of EUVL mask blanks is an important issue for the near-term of the industry. One main issue affecting transport is how the defect may charge in the presence of plasma. In some cases, plasma may act to contain defects away from the mask surface. We show simulation results of the effect of plasma on defect transport demonstrating how the formation of plasma sheathes and a plasma potential act to confine highly negatively charged particles, such as defect particles would be.

  19. Acceleration and transport processes - Verification and observations. [of particles in interstellar medium

    NASA Technical Reports Server (NTRS)

    Jokipii, J. R.

    1983-01-01

    The general problem of diffusive transport and acceleration of energetic charged particles is considered. The transport of solar-flare particles, solar modulation of galactic cosmic rays and shock acceleration processes on the solar wind are examined and observational tests are summarized. It is concluded that the basic diffusive transport equation is a useful approximation in situations like the solar wind, where turbulent scattering by magnetic irregularities is sufficient to maintain near isotropy. The application of this equation to the interstellar medium andd other, more distant astrophysical regimes is then discussed and implications for gamma-ray astrophysics are outlined. Finally the evidence for interstellar turbulence is reviewed and its consequences briefly discussed.

  20. Diffusion in pulsar wind nebulae: an investigation using magnetohydrodynamic and particle transport models

    NASA Astrophysics Data System (ADS)

    Porth, O.; Vorster, M. J.; Lyutikov, M.; Engelbrecht, N. E.

    2016-08-01

    We study the transport of high-energy particles in pulsar wind nebulae (PWN) using three-dimensional magnetohydrodynamic (MHD) and test-particle simulations, as well as a Fokker-Planck particle transport model. The latter includes radiative and adiabatic losses, diffusion, and advection on the background flow of the simulated MHD nebula. By combining the models, the spatial evolution of flux and photon index of the X-ray synchrotron emission is modelled for the three nebulae G21.5-0.9, the inner regions of Vela, and 3C 58, thereby allowing us to derive governing parameters: the magnetic field strength, average flow velocity, and spatial diffusion coefficient. For comparison, the nebulae are also modelled with the semi-analytic Kennel & Coroniti model but the Porth et al. model generally yields better fits to the observational data. We find that high velocity fluctuations in the turbulent nebula (downstream of the termination shock) give rise to efficient diffusive transport of particles, with average Péclet number close to unity, indicating that both advection and diffusion play an important role in particle transport. We find that the diffusive transport coefficient of the order of ˜ 2 × 1027(Ls/0.42 Ly) cm2 s- 1 (Ls is the size of the termination shock) is independent of energy up to extreme particle Lorentz factors of γp ˜ 1010.

  1. The fluctuation energy balance in non-suspended fluid-mediated particle transport

    SciTech Connect

    Pähtz, Thomas; Durán, Orencio; Ho, Tuan-Duc; Valance, Alexandre; Kok, Jasper F.

    2015-01-15

    Here, we compare two extreme regimes of non-suspended fluid-mediated particle transport, transport in light and heavy fluids (“saltation” and “bedload,” respectively), regarding their particle fluctuation energy balance. From direct numerical simulations, we surprisingly find that the ratio between collisional and fluid drag dissipation of fluctuation energy is significantly larger in saltation than in bedload, even though the contribution of interparticle collisions to transport of momentum and energy is much smaller in saltation due to the low concentration of particles in the transport layer. We conclude that the much higher frequency of high-energy particle-bed impacts (“splash”) in saltation is the cause for this counter-intuitive behavior. Moreover, from a comparison of these simulations to particle tracking velocimetry measurements which we performed in a wind tunnel under steady transport of fine and coarse sand, we find that turbulent fluctuations of the flow produce particle fluctuation energy at an unexpectedly high rate in saltation even under conditions for which the effects of turbulence are usually believed to be small.

  2. PTV measurements of Lagrangian particle transport by surface gravity wave groups

    NASA Astrophysics Data System (ADS)

    van den Bremer, Ton; Whittaker, Colin; Raby, Alison; Taylor, Paul

    2015-11-01

    We present detailed PTV (particle tracking velocimetry) measurements of the Lagrangian transport and trajectories of neutrally buoyant particles underneath two-dimensional surface gravity wave groups in a laboratory flume. By focussing our attention on wave groups of moderate steepness, we confirm the predictions of standard second-order multi-chromatic wave theory, in which the body of fluid satisfies the potential flow equations. Particles near the surface are transported forwards and their motion is dominated by Stokes drift. Particles at sufficient depth are transported backwards by the Eulerian return current that was first described by Longuet-Higgins & Stewart (1962) and forms an inseparable counterpart of Stokes drift for surface wave groups ensuring the (irrotational) mass balance holds. Finally, we provide experimental validation of a simple scaling relationship, derived based under the assumption of separation of scales, for the transition depth: the depth above which Lagrangian particles are transported forwards by the Stokes drift and below which such particles are transported backwards by the return current. We present results for a range of effective water depths.

  3. Diffusion in pulsar wind nebulae: an investigation using magnetohydrodynamic and particle transport models

    NASA Astrophysics Data System (ADS)

    Porth, O.; Vorster, M. J.; Lyutikov, M.; Engelbrecht, N. E.

    2016-08-01

    We study the transport of high-energy particles in pulsar wind nebulae (PWN) using three-dimensional MHD (see Porth et al. (2014) for details) and test-particle simulations, as well as a Fokker-Planck particle transport model. The latter includes radiative and adiabatic losses, diffusion, and advection on the background flow of the simulated MHD nebula. By combining the models, the spatial evolution of flux and photon index of the X-ray synchrotron emission is modelled for the three nebulae G21.5-0.9, the inner regions of Vela, and 3C 58, thereby allowing us to derive governing parameters: the magnetic field strength, average flow velocity and spatial diffusion coefficient. For comparison, the nebulae are also modelled with the semi-analytic Kennel & Coroniti (1984) model but the Porth et al. (2014) model generally yields better fits to the observational data. We find that high velocity fluctuations in the turbulent nebula (downstream of the termination shock) give rise to efficient diffusive transport of particles, with average P\\'eclet number close to unity, indicating that both advection and diffusion play an important role in particle transport. We find that the diffusive transport coefficient of the order of $\\sim2\\times 10^{27} (L_{\\rm s}/0.42\\rm Ly) cm^{2}s^{-1}$ ($L_{\\rm s}$ is the size of the termination shock) is independent of energy up to extreme particle Lorentz factors of $\\gamma_{p}\\sim10^{10}$.

  4. Focused transport of energetic particles along magnetic field lines draped around a coronal mass ejection

    NASA Technical Reports Server (NTRS)

    Tan, L. C.; Mason, G. M.; Lee, M. A.; Klecker, B.; Ipavich, F. M.

    1992-01-01

    Evidence is presented for focused transport of energetic particles along magnetic field lines draped around a coronal mass ejection. This evidence was obtained with the University of Maryland/Max-Planck-Institute experiment on the ISEE-3 spacecraft during the decay phase of the June 6, 1979, solar particle event. During the early portion of the decay phase of this event, interplanetary magnetic field lines were apparently draped around a coronal mass ejection, leading to a small focusing length on the western flank where ISEE 3 was located. A period of very slow decrease of particle intensity was observed, along with large sunward anisotropy in the solar wind frame, which is inconsistent with predictions of the standard Fokker-Planck equation models for diffusive transport. It was found possible to fit the observations, assuming that focused transport dominates and that the particle pitch angle scattering is isotropic.

  5. Analysis of Particle Transport Using a Particulate Tracer Modeling

    NASA Astrophysics Data System (ADS)

    Wang, P.; Linker, L. C.; Lung, W.; Batiuk, R. A.

    2002-05-01

    Understanding the transport of dissolved and particulate materials in the Chesapeake Bay estuary is critical to allocating nutrient and sediment load reduction goals to the seven watershed states. A computer simulation of a particulate conservative tracer was conducted to help determine the transport mechanism. Tracers were loaded daily at the fall-line of Potomac River (a middle Bay's tributary). The settling rate is set at 0.1 m/day, with the assumption of neither scour nor re-suspension of tracer from the bed to allow continuous accumulation of tracers on bed. The low settling rate was used to allow tracer to transport widely in the estuary to provide information on the transport of fine particulates such as dead algae. After the tracers reach the mouth of Potomac River, most of them are further transported into the lower main-stem Bay. Flood tide is the main force for tracers transported north to the upper main-stem Bay and to the upstream of non-source rivers. In the main stem of the Bay, there exist concentration gradients from the Potomac River mouth to the opposite shore (the Maryland and Virginia eastern shore), to the lower Bay, and to the upper Bay. Concentration gradients also exist from the fall-line to the mouth in the source river, and from the mouth to the upstream in non-source rivers. These gradients are usually disturbed across trenches, due to a so-called "trench effect". A trench either deposits more or less tracers than its shallower sides, depending on the trench to be hydrologically landward from the source (i.e., the Potomac fall line) or the sub-source (e.g., the Rappahannock River mouth for the trench in the upstream of Rappahannock River), or hydrologically seaward from the source or the sub-source. Depending on the layer (saline water-rich or fresh water-rich) in which tracers reside and the direction (landward or seaward) along which tracers transport, the transport/deposit of tracer may be favored along trench over its shallower sides

  6. Particle transport and heat loads in NIO1

    NASA Astrophysics Data System (ADS)

    Fonnesu, N.; Cavenago, M.; Serianni, G.; Veltri, P.

    2016-02-01

    NIO1 is a compact radio frequency ion source designed to generate a 60 kV-135 mA hydrogen negative ion beam and it aims at continuous operation, which implies a detailed thermo-mechanical analysis of the beam-facing components, in particular, the accelerator grids. A 3D analysis of the entire NIO1 beam has been performed for the first time with a fully 3D version of EAMCC, a relativistic particle tracking code for the calculation of the grid power deposition induced by particle impacts. According to the results presented in this paper, secondary and co-extracted electrons cause a non-negligible heat load on the grids, where different high-power density regions, within reasonable sustainable standard limits, are calculated.

  7. Particle transport and heat loads in NIO1.

    PubMed

    Fonnesu, N; Cavenago, M; Serianni, G; Veltri, P

    2016-02-01

    NIO1 is a compact radio frequency ion source designed to generate a 60 kV-135 mA hydrogen negative ion beam and it aims at continuous operation, which implies a detailed thermo-mechanical analysis of the beam-facing components, in particular, the accelerator grids. A 3D analysis of the entire NIO1 beam has been performed for the first time with a fully 3D version of EAMCC, a relativistic particle tracking code for the calculation of the grid power deposition induced by particle impacts. According to the results presented in this paper, secondary and co-extracted electrons cause a non-negligible heat load on the grids, where different high-power density regions, within reasonable sustainable standard limits, are calculated. PMID:26932077

  8. Low Mach Code with Particle Transport Version 1.0

    Energy Science and Technology Software Center (ESTSC)

    2010-08-09

    Computational technique is based on the firect numerical simulation of the particulate flows using distributed Lagrange multiplier technique (Kanarska et al. 2010 submitted to Computers and Fluids journal). Each particle is explicitly resolved on the Eulerian grid as a separate domain, using solid volume of fractions. The fluid equations are solved through the entire computational domain, and, Lagrange multiplier constrains are applied inside the solid domain to satisfy rigidity contrains.

  9. Transport and fate of microplastic particles in wastewater treatment plants.

    PubMed

    Carr, Steve A; Liu, Jin; Tesoro, Arnold G

    2016-03-15

    Municipal wastewater treatment plants (WWTPs) are frequently suspected as significant point sources or conduits of microplastics to the environment. To directly investigate these suspicions, effluent discharges from seven tertiary plants and one secondary plant in Southern California were studied. The study also looked at influent loads, particle size/type, conveyance, and removal at these wastewater treatment facilities. Over 0.189 million liters of effluent at each of the seven tertiary plants were filtered using an assembled stack of sieves with mesh sizes between 400 and 45 μm. Additionally, the surface of 28.4 million liters of final effluent at three tertiary plants was skimmed using a 125 μm filtering assembly. The results suggest that tertiary effluent is not a significant source of microplastics and that these plastic pollutants are effectively removed during the skimming and settling treatment processes. However, at a downstream secondary plant, an average of one micro-particle in every 1.14 thousand liters of final effluent was counted. The majority of microplastics identified in this study had a profile (color, shape, and size) similar to the blue polyethylene particles present in toothpaste formulations. Existing treatment processes were determined to be very effective for removal of microplastic contaminants entering typical municipal WWTPs. PMID:26795302

  10. Coupled Particle Transport and Pattern Formation in a Nonlinear Leaky-Box Model

    NASA Technical Reports Server (NTRS)

    Barghouty, A. F.; El-Nemr, K. W.; Baird, J. K.

    2009-01-01

    Effects of particle-particle coupling on particle characteristics in nonlinear leaky-box type descriptions of the acceleration and transport of energetic particles in space plasmas are examined in the framework of a simple two-particle model based on the Fokker-Planck equation in momentum space. In this model, the two particles are assumed coupled via a common nonlinear source term. In analogy with a prototypical mathematical system of diffusion-driven instability, this work demonstrates that steady-state patterns with strong dependence on the magnetic turbulence but a rather weak one on the coupled particles attributes can emerge in solutions of a nonlinearly coupled leaky-box model. The insight gained from this simple model may be of wider use and significance to nonlinearly coupled leaky-box type descriptions in general.

  11. Random walk particle tracking simulations of non-Fickian transport in heterogeneous media

    SciTech Connect

    Srinivasan, G. Tartakovsky, D.M. Dentz, M. Viswanathan, H.; Berkowitz, B.; Robinson, B.A.

    2010-06-01

    Derivations of continuum nonlocal models of non-Fickian (anomalous) transport require assumptions that might limit their applicability. We present a particle-based algorithm, which obviates the need for many of these assumptions by allowing stochastic processes that represent spatial and temporal random increments to be correlated in space and time, be stationary or non-stationary, and to have arbitrary distributions. The approach treats a particle trajectory as a subordinated stochastic process that is described by a set of Langevin equations, which represent a continuous time random walk (CTRW). Convolution-based particle tracking (CBPT) is used to increase the computational efficiency and accuracy of these particle-based simulations. The combined CTRW-CBPT approach enables one to convert any particle tracking legacy code into a simulator capable of handling non-Fickian transport.

  12. Surface transport and stable trapping of particles and cells by an optical waveguide loop.

    PubMed

    Hellesø, Olav Gaute; Løvhaugen, Pål; Subramanian, Ananth Z; Wilkinson, James S; Ahluwalia, Balpreet Singh

    2012-09-21

    Waveguide trapping has emerged as a useful technique for parallel and planar transport of particles and biological cells and can be integrated with lab-on-a-chip applications. However, particles trapped on waveguides are continuously propelled forward along the surface of the waveguide. This limits the practical usability of the waveguide trapping technique with other functions (e.g. analysis, imaging) that require particles to be stationary during diagnosis. In this paper, an optical waveguide loop with an intentional gap at the centre is proposed to hold propelled particles and cells. The waveguide acts as a conveyor belt to transport and deliver the particles/cells towards the gap. At the gap, the diverging light fields hold the particles at a fixed position. The proposed waveguide design is numerically studied and experimentally implemented. The optical forces on the particle at the gap are calculated using the finite element method. Experimentally, the method is used to transport and trap micro-particles and red blood cells at the gap with varying separations. The waveguides are only 180 nm thick and thus could be integrated with other functions on the chip, e.g. microfluidics or optical detection, to make an on-chip system for single cell analysis and to study the interaction between cells. PMID:22814473

  13. Large Eddy Simulation of Transient Flow, Solidification, and Particle Transport Processes in Continuous-Casting Mold

    NASA Astrophysics Data System (ADS)

    Liu, Zhongqiu; Li, Linmin; Li, Baokuan; Jiang, Maofa

    2014-07-01

    The current study developed a coupled computational model to simulate the transient fluid flow, solidification, and particle transport processes in a slab continuous-casting mold. Transient flow of molten steel in the mold is calculated using the large eddy simulation. An enthalpy-porosity approach is used for the analysis of solidification processes. The transport of bubble and non-metallic inclusion inside the liquid pool is calculated using the Lagrangian approach based on the transient flow field. A criterion of particle entrapment in the solidified shell is developed using the user-defined functions of FLUENT software (ANSYS, Inc., Canonsburg, PA). The predicted results of this model are compared with the measurements of the ultrasonic testing of the rolled steel plates and the water model experiments. The transient asymmetrical flow pattern inside the liquid pool exhibits quite satisfactory agreement with the corresponding measurements. The predicted complex instantaneous velocity field is composed of various small recirculation zones and multiple vortices. The transport of particles inside the liquid pool and the entrapment of particles in the solidified shell are not symmetric. The Magnus force can reduce the entrapment ratio of particles in the solidified shell, especially for smaller particles, but the effect is not obvious. The Marangoni force can play an important role in controlling the motion of particles, which increases the entrapment ratio of particles in the solidified shell obviously.

  14. GYROKINETIC PARTICLE SIMULATION OF TURBULENT TRANSPORT IN BURNING PLASMAS

    SciTech Connect

    Horton, Claude Wendell

    2014-06-10

    The SciDAC project at the IFS advanced the state of high performance computing for turbulent structures and turbulent transport. The team project with Prof Zhihong Lin [PI] at Univ California Irvine produced new understanding of the turbulent electron transport. The simulations were performed at the Texas Advanced Computer Center TACC and the NERSC facility by Wendell Horton, Lee Leonard and the IFS Graduate Students working in that group. The research included a Validation of the electron turbulent transport code using the data from a steady state university experiment at the University of Columbia in which detailed probe measurements of the turbulence in steady state were used for wide range of temperature gradients to compare with the simulation data. These results were published in a joint paper with Texas graduate student Dr. Xiangrong Fu using the work in his PhD dissertation. X.R. Fu, W. Horton, Y. Xiao, Z. Lin, A.K. Sen and V. Sokolov, “Validation of electron Temperature gradient turbulence in the Columbia Linear Machine, Phys. Plasmas 19, 032303 (2012).

  15. Charged-Particle Bean Transport for Ion Trapping Experiments.

    NASA Astrophysics Data System (ADS)

    Raichle, Brian W.; Wingfield, Love M.

    2001-11-01

    Electrostatic Einsel lenses are being developed for beam transport for use in two distinct metastable atomic lifetime experiments using two separate rf-ion traps. Each system has been modeled using Simion software, and the lenses have been designed from commercially available eV-parts. The first application is part of an electron gun source. Electrons are produced by a conventional dispenser cathode and are transported 25 cm to the trap. The design goal is to create a beam divergence to fully illuminate the active trap volume, and to provide tunable electron energies from 50 to 500 eV. The second application is to transport ions 1 m from a laser ablation ion source to an rf ion trap. Laser ablation involves essentially boiling ions from a solid target with intense laser pulses. Here, the design goal is to maximize flux by maximizing the solid angle of acceptance to the trap, minimize radial velocity, and minimize the spread in axial velocity. Development of a laser ablation ion source external to the trap volume will allow a very low base pressure in the trap region, which will make possible the study of species with lifetimes approaching 1 s. In addition, laser ablation will produce intermediately-charged ions from non-conductive solid targets.

  16. Atmospheric fate and transport of fine volcanic ash: Does particle shape matter?

    NASA Astrophysics Data System (ADS)

    White, C. M.; Allard, M. P.; Klewicki, J.; Proussevitch, A. A.; Mulukutla, G.; Genareau, K.; Sahagian, D. L.

    2013-12-01

    Volcanic ash presents hazards to infrastructure, agriculture, and human and animal health. In particular, given the economic importance of intercontinental aviation, understanding how long ash is suspended in the atmosphere, and how far it is transported has taken on greater importance. Airborne ash abrades the exteriors of aircraft, enters modern jet engines and melts while coating interior engine parts causing damage and potential failure. The time fine ash stays in the atmosphere depends on its terminal velocity. Existing models of ash terminal velocities are based on smooth, quasi-spherical particles characterized by Stokes velocity. Ash particles, however, violate the various assumptions upon which Stokes flow and associated models are based. Ash particles are non-spherical and can have complex surface and internal structure. This suggests that particle shape may be one reason that models fail to accurately predict removal rates of fine particles from volcanic ash clouds. The present research seeks to better parameterize predictive models for ash particle terminal velocities, diffusivity, and dispersion in the atmospheric boundary layer. The fundamental hypothesis being tested is that particle shape irreducibly impacts the fate and transport properties of fine volcanic ash. Pilot studies, incorporating modeling and experiments, are being conducted to test this hypothesis. Specifically, a statistical model has been developed that can account for actual volcanic ash size distributions, complex ash particle geometry, and geometry variability. Experimental results are used to systematically validate and improve the model. The experiments are being conducted at the Flow Physics Facility (FPF) at UNH. Terminal velocities and dispersion properties of fine ash are characterized using still air drop experiments in an unconstrained open space using a homogenized mix of source particles. Dispersion and sedimentation dynamics are quantified using particle image

  17. Wave induced transport and mixing of buoyant particles

    NASA Astrophysics Data System (ADS)

    Drivdal, Magnus; Broström, Göran; Christensen, Kai H.

    2014-05-01

    The modeling of wave-current and wave-turbulence interactions have received much attention during recent years. Both the breaking of surface waves and the inclusion of the Stokes shear production have been shown to increase the upper ocean turbulence. Furthermore the Coriolis force acting on the Stokes drift redistributes the momentum in the upper ocean, leading to a deflection of the currents. An important application affected by these processes that still needs to be studied is the mixing and drift of particles. Using an ocean column model, modified to take surface wave effects into account, we investigate how the increased mixing by wave breaking and Stokes shear production as well as the stronger veering by the Coriolis-Stokes force effects the drift of suspended particles. Here the suspended particles are buoyant tracers that can represent oil droplets or plankton, for example fish eggs and larvae. The energy and momentum fluxes as well as the Stokes drift depend on the directional wave spectrum that can be obtained from a wave model or from observations. Comparing with classical Ekman theory some physical effects on the system are studied, and as a realistic test case we use the model to study the oil drift after an offshore oil spill that took place outside the western coast of Norway in 2007. During this accident the average net drift of oil was observed to be approximately 0.1% of the wind speed at an angle of about 90-120 degrees to the right, far slower and more deflected away from the wind direction than predicted by both numerical and empirical models. With wind and wave forcing from ECMWF reanalysis data, it is shown that the wave effects are important for the resultant drift in this case, and has the potential to improve drift forecasting.

  18. Fermion particle production in semiclassical Boltzmann-Vlasov transport theory

    SciTech Connect

    Dawson, John F.; Mihaila, Bogdan; Cooper, Fred

    2009-07-01

    We present numerical solutions of the semiclassical Boltzmann-Vlasov equation for fermion particle-antiparticle production by strong electric fields in boost-invariant coordinates in (1+1) and (3+1) dimensional QED. We compare the Boltzmann-Vlasov results with those of recent quantum field theory calculations and find good agreement. We conclude that extending the Boltzmann-Vlasov approach to the case of QCD should allow us to do a thorough investigation of how backreaction affects recent results on the dependence of the transverse momentum distribution of quarks and antiquarks on a second Casimir invariant of color SU(3)

  19. Impact of particle nanotopology on water transport through hydrophobic soils.

    PubMed

    Truong, Vi Khanh; Owuor, Elizabeth A; Murugaraj, Pandiyan; Crawford, Russell J; Mainwaring, David E

    2015-12-15

    The impact of non- and poorly wetting soils has become increasingly important, due to its direct influence on the water-limited potential yield of rain-fed grain crops at a time of enhanced global competition for fresh water. This study investigates the physical and compositional mechanisms underlying the influence of soil organic matter (SOM) on the wetting processes of model systems. These model systems are directly related to two sandy wheat-producing soils that have contrasting hydrophobicities. Atomic force microscopy (AFM), contact angle and Raman micro-spectroscopy measurements on model planar and particulate SOM-containing surfaces demonstrated the role of the hierarchical surface structure on the wetting dynamics of packed particulate beds. It was found that a nanoscale surface topology is superimposed over the microscale roughness of the packed particles, and this controls the extent of water ingress into particulate packed beds of these particles. Using two of the dominant component organic species found in the SOM of the two soils used in this study, it was found that the specific interactions taking place between the SOM components, rather than their absolute quantities, dictated the formation of highly hydrophobic surface nanotopologies. This hydrophobicity was demonstrated, using micro-Raman imaging, to arise from the surface being in a composite Cassie-Baxter wetting state. Raman imaging demonstrated that the particle surface nanotopography influenced the degree of air entrapment in the interstices within the particle bed. The influence of a conventional surfactant on the wetting kinetics of both the model planar surfaces and packed particulate beds was quantified in terms of their respective advancing contact angles and the capillary wetting force vector. The information obtained for all of the planar and particulate surfaces, together with that obtained for the two soils, allowed linear relationships to be obtained in plots of the contact angle

  20. Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas

    SciTech Connect

    Diamond, P.H.; Lin, Z.; Wang, W.; Horton, W.; Klasky, S.; Decyk, V.; Ma, K.-L.; Chames, J.; Adams, M.

    2011-09-21

    The three-year project GPS-TTBP resulted in over 152 publications and 135 presentations. This summary focuses on the scientific progress made by the project team. A major focus of the project was on the physics intrinsic rotation in tokamaks. Progress included the first ever flux driven study of net intrinsic spin-up, mediated by boundary effects (in collaboration with CPES), detailed studies of the microphysics origins of the Rice scaling, comparative studies of symmetry breaking mechanisms, a pioneering study of intrinsic torque driven by trapped electron modes, and studies of intrinsic rotation generation as a thermodynamic engine. Validation studies were performed with C-Mod, DIII-D and CSDX. This work resulted in very successful completion of the FY2010 Theory Milestone Activity for OFES, and several prominent papers of the 2008 and 2010 IAEA Conferences. A second major focus was on the relation between zonal flow formation and transport non-locality. This culminated in the discovery of the ExB staircase - a conceptually new phenomenon. This also makes useful interdisciplinary contact with the physics of the PV staircase, well-known in oceans and atmospheres. A third topic where progress was made was in the simulation and theory of turbulence spreading. This work, now well cited, is important for understanding the dynamics of non-locality in turbulent transport. Progress was made in studies of conjectured non-diffusive transport in trapped electron turbulence. Pioneering studies of ITB formation, coupling to intrinsic rotation and hysteresis were completed. These results may be especially significant for future ITER operation. All told, the physics per dollar performance of this project was quite good. The intense focus was beneficial and SciDAC resources were essential to its success.

  1. Time-Dependent, Parallel Neutral Particle Transport Code System.

    Energy Science and Technology Software Center (ESTSC)

    2009-09-10

    Version 00 PARTISN (PARallel, TIme-Dependent SN) is the evolutionary successor to CCC-547/DANTSYS. The PARTISN code package is a modular computer program package designed to solve the time-independent or dependent multigroup discrete ordinates form of the Boltzmann transport equation in several different geometries. The modular construction of the package separates the input processing, the transport equation solving, and the post processing (or edit) functions into distinct code modules: the Input Module, the Solver Module, and themore » Edit Module, respectively. PARTISN is the evolutionary successor to the DANTSYSTM code system package. The Input and Edit Modules in PARTISN are very similar to those in DANTSYS. However, unlike DANTSYS, the Solver Module in PARTISN contains one, two, and three-dimensional solvers in a single module. In addition to the diamond-differencing method, the Solver Module also has Adaptive Weighted Diamond-Differencing (AWDD), Linear Discontinuous (LD), and Exponential Discontinuous (ED) spatial differencing methods. The spatial mesh may consist of either a standard orthogonal mesh or a block adaptive orthogonal mesh. The Solver Module may be run in parallel for two and three dimensional problems. One can now run 1-D problems in parallel using Energy Domain Decomposition (triggered by Block 5 input keyword npeg>0). EDD can also be used in 2-D/3-D with or without our standard Spatial Domain Decomposition. Both the static (fixed source or eigenvalue) and time-dependent forms of the transport equation are solved in forward or adjoint mode. In addition, PARTISN now has a probabilistic mode for Probability of Initiation (static) and Probability of Survival (dynamic) calculations. Vacuum, reflective, periodic, white, or inhomogeneous boundary conditions are solved. General anisotropic scattering and inhomogeneous sources are permitted. PARTISN solves the transport equation on orthogonal (single level or block-structured AMR) grids in 1-D

  2. Modeling nitrogen transport and transformation in aquifers using a particle-tracking approach

    NASA Astrophysics Data System (ADS)

    Cui, Zhengtao; Welty, Claire; Maxwell, Reed M.

    2014-09-01

    We have integrated multispecies biodegradation and geochemical reactions into an existing particle-tracking code to simulate reactive transport in three-dimensional variably saturated media, with a focus on nitrification and denitrification processes. This new numerical model includes reactive air-phase transport so that gases such as N2 and CO2 can be tracked. Although nitrogen biodegradation is the primary problem addressed here, the method presented is also applicable to other reactive multispecies transport problems. We verified the model by comparison with (1) analytical solutions for saturated one- and two-dimensional cases; (2) a finite element model for a one-dimensional unsaturated case; and (3) laboratory observations for a one-dimensional saturated case. Good agreement between the new code and the verification problems is demonstrated. The new model can simulate nitrogen transport and transformation in a heterogeneous permeability field where sharp concentration gradients are present. An example application to nitrogen species biodegradation and transport of a plume emanating from a leaking sewer in a heterogeneous, variably saturated aquifer is presented to illustrate this capability. This example is a novel application of coupling unsaturated/saturated zone transport with nitrogen species biodegradation. The code has the computational advantages of particle-tracking algorithms, including local and global mass conservation and minimal numerical dispersion. We also present new methods for improving particle code efficiency by implementing the concept of tracking surplus/deficit particles and particle recycling in order to control the growth of particle numbers. The new model retains the advantages of the particle tracking approach such as allowing relatively low spatial and temporal resolutions to be used, while incorporating the robustness of grid-based Monod kinetics to simulate biogeochemical reactions.

  3. Kinetic phenomena in charged particle transport in gases and plasmas

    SciTech Connect

    Petrovic, Zoran Lj.; Dujko, Sasa; Sasic, Olivera; Stojanovic, Vladimir; Malovic, Gordana

    2012-05-25

    The key difference between equilibrium (thermal) and non-equilibrium (low temperature - a.k.a. cold) plasmas is in the degree in which the shape of the cross sections influences the electron energy distribution function (EEDF). In this paper we will discuss the issue of kinetic phenomena from two different angles. The first will be how to take advantage of the strong influence and use low current data to obtain the cross sections. This is also known as the swarm technique and the product of a ''swarm analysis'' is a set of cross sections giving good number, momentum and energy balances of electrons or other charged particles. At the same time understanding the EEDF is based on the cross section data. Nevertheless sometimes the knowledge of the cross sections and even the behaviour of individual particles are insufficient to explain collective behaviour of the ensemble. The resulting ''kinetic'' effects may be used to favour certain properties of non-equilibrium plasmas and even may be used as the basis of some new plasma applications.

  4. A Pipeline Transport Correlation for Slurries with Small but Dense Particles

    SciTech Connect

    Poloski, Adam P; Etchells, Arthur W; Chun, Jaehun; Adkins, Harold E; Casella, Andrew M; Minette, Michael J; Yokuda, Satoru T

    2010-04-01

    Most correlations/models for minimum transport or critical velocity of slurry were developed for slurries composed of particles greater than ~100-200 µm diameter with narrow particle-size distributions which is typical of the minerals industry. Many other process industries handle smaller particles. In particular waste slurries at the U.S. Department of Energy's Hanford Site have broad size distributions and significant fractions of smaller particles. Despite the size of these wastes, recent PNNL studies indicate that the small particles might be of sufficient density to pose a significant risk for pipeline deposition and plugging. To allow predictive assessment of deposition of fine dense particles for waste slurry transport at the U.S. DOE Hanford site, a pipeline-transport correlation for critical velocity was developed using a simple power-law between two dimensionless numbers important for slurry transport, the deposition Froude and Archimedes numbers. The correlation accords well with experimental data for slurries with Archimedes numbers <80 and is an adequate pipeline design guide for processing Hanford waste slurry.

  5. Angular momentum transport and particle acceleration during magnetorotational instability in a kinetic accretion disk.

    PubMed

    Hoshino, Masahiro

    2015-02-13

    Angular momentum transport and particle acceleration during the magnetorotational instability (MRI) in a collisionless accretion disk are investigated using three-dimensional particle-in-cell simulation. We show that the kinetic MRI can provide not only high-energy particle acceleration but also enhancement of angular momentum transport. We find that the plasma pressure anisotropy inside the channel flow with p(∥)>p(⊥) induced by active magnetic reconnection suppresses the onset of subsequent reconnection, which, in turn, leads to high-magnetic-field saturation and enhancement of the Maxwell stress tensor of angular momentum transport. Meanwhile, during the quiescent stage of reconnection, the plasma isotropization progresses in the channel flow and the anisotropic plasma with p(⊥)>p(∥) due to the dynamo action of MRI outside the channel flow contribute to rapid reconnection and strong particle acceleration. This efficient particle acceleration and enhanced angular momentum transport in a collisionless accretion disk may explain the origin of high-energy particles observed around massive black holes. PMID:25723200

  6. The role of unsteady forces for sediment particles in bedload transport

    NASA Astrophysics Data System (ADS)

    Liu, Detian; Liu, Xiaofeng; Fu, Xudong

    2016-04-01

    In engineering, bedload transport is usually predicted by a variety of formulas, and huge uncertainty is found from case to case. One of the fundamental reasons is the lack of fully understanding the dynamic behavior of bedload particles. We explore the dynamic characteristics of sediment particles transported in turbulent open-channel flows. A numerical model of sediment transport is built by combining the large eddy simulation (LES) with discrete element model (DEM) using a fully four-way coupling method. Particular attention is paid to the hydrodynamic forces acting on bedload particles. The result shows that, in addition to drag force, the unsteady forces (i.e. Basset history force and added mass force) are important (40%~60% in the summation of all the time-averaged magnitude of forces) for fine sediment particles (with a diameter of 0.5 mm), which are usually ignored for computational complexity. While the lift force has been found to be significant for gravel particles (with a diameter of 31 mm)[1], it is not relatively dominant for such fine particles (less than 3% in the summation). This helps explaining why the prediction of the same formula change greatly from case to case. The comparison with experimental data also shows great potential of the current LES-DEM model for fundamental research in bedload transport. Reference: [1] Nino, Y., & Garcia, M. (1994). Gravel saltation 2. Modeling. Water Resources Research, 30(6), 1915-1924.

  7. Analysis of non-spherical particle transport in complex internal shear flows

    NASA Astrophysics Data System (ADS)

    Feng, Y.; Kleinstreuer, C.

    2013-09-01

    Focusing on ellipsoidal particles of different aspect ratios, the motion characteristics, including critical angle and stable vs. unstable rotational periods, are computationally analyzed in developing and fully developed tubular flows. As an application of particle transport and deposition, the one-way coupled Euler-Lagrange method enhanced by Euler's rotation equations is then employed to simulate laminar-turbulent flow in a subject-specific lung-airway model. First, to gain some basic insight into the dynamics of non-spherical particles, tubular flow is considered where the trajectories of ellipsoidal fibers with randomly initialized incidence angles were released at different inlet-plane positions, computed and visualized. Local and overall particle deposition results are compared between spheres, ellipsoidal fibers, and sphere-equivalent particles for which a revised Stokes diameter was developed. Concerning non-spherical particle transport and deposition in a subject-specific respiratory system, the validated computer simulation model provides realistic and accurate particle-deposition results. Specifically, slender non-spherical particles (i.e., those with higher aspect ratios) are potentially more harmful than thicker ones due to their ability to penetrate into deeper lung regions when somewhat aligned with the major flow field. Furthermore, non-spherical particle deposition is enhanced as the breathing rate increases.

  8. Understanding Particle Defect Transport in an Ultra-Clean Sputter Coating Process

    SciTech Connect

    Walton, C; Kearney, P; Folta, J; Sweeney, D; Mirkarimi, P

    2003-03-24

    Low-defect mask blanks remain a key technical challenge to Extreme Ultraviolet Lithography (EUVL). The mask blank is ion-beam sputter-coated with an 81-layer Mo/Si multilayer stack for high reflectance at {lambda} = 13.4nm. The current mask coating process can achieve a median added defect level of 0.05 defects/cm{sup 2} (12 added defects 90nm or larger on a 200mm Si-wafer test substrate), but this must be reduced by about a factor of 10 to meet mask cost requirements for EUVL. To further reduce the particle defect level, we have studied pathways for particle transport, using test particles and particles native to the coating process, and combined the results into a computational model of particle transport in an ion-beam sputter system. At process pressure, gas drag is negligible for particles above 100nm, so particles travel ballistically until they hit a surface. Bounce from chamber walls allows particles to reach all surfaces in the chamber if they have initial velocities above {approx}100m/s. The ion beam has sufficient momentum to entrain slower particles and accelerate them toward the sputter target, where some can bounce to the substrate. The model shows preliminary agreement with experimental defect distributions on witness wafers at various positions within the coating chamber.

  9. Particle trapping and beam transport issues in laser driven accelerators

    NASA Astrophysics Data System (ADS)

    Gwenael, Fubiani; Wim, Leemans; Eric, Esarey

    2000-10-01

    The LWFA and colliding pulses [1][2] sheme are capable of producing very compact electron bunches where the longitudinal size is much smaller than the transverse size. In this case, even if the electrons are relativistic, space charge force can affect the longitudinal and transverse bunch properties [3][4]. In the Self-modulated regime and the colliding pulse sheme, electrons are trapped from the background plasma and rapidly accelerated. We present theoretical studies of the generation and transport of electron bunches in LWFAs. The space charge effect induced in the bunch is modelled assuming the bunch is ellipsoid like. Beam transport in vacuum, comparison between gaussian and waterbag distribution, comparison between envelope model and PIC simulation will be discussed. This work is supported by the Director, Office of Science, Office of High Energy & Nuclear Physics, High Energy Physics Division, of the U.S Department of Energy, under Contract No. DE-AC03-76SF00098 [1]E.Esarey et al.,IEEE Trans. Plasma Sci. PS-24,252 (1996); W.P. Leemans et al, ibidem, 331. [2]D. Umstadter et al., Phys. Rev. Lett. 76, 2073 (1996); E.Esarey et al., Phys. Rev. Lett. 79, 2682 (1997); C.B Schroeder et al., Phys. Rev. E59, 6037 (1999) [3]DESY M87-161 (1987); DESY M88-013 (1988) [4] R.W. Garnett and T.P Wangler, IEEE Part. Acce. Conf. (1991)

  10. Perpendicular Diffusion in the Transport of Solar Energetic Particles from Unconnected Sources: The Counter-streaming Particle Beams Revisited

    NASA Astrophysics Data System (ADS)

    He, H.-Q.

    2015-12-01

    In some solar energetic particle (SEP) events, a counter-streaming particle beam with a deep depression of flux at ∼ 90^\\circ pitch angle during the beginning phase is observed. Two different interpretations exist within the community to explain this interesting phenomenon. One explanation invokes the hypothesis of an outer reflecting boundary or a magnetic mirror beyond the observer. The other one considers the effect of perpendicular diffusion on the transport process of SEPs in interplanetary space. In this work, we revisit the problem of counter-streaming particle beams observed in SEP events and discuss the possible mechanisms responsible for the formation of this phenomenon. We clarify some results in previous works.

  11. Modeling and Simulation of Cardiogenic Embolic Particle Transport to the Brain

    NASA Astrophysics Data System (ADS)

    Mukherjee, Debanjan; Jani, Neel; Shadden, Shawn C.

    2015-11-01

    Emboli are aggregates of cells, proteins, or fatty material, which travel along arteries distal to the point of their origin, and can potentially block blood flow to the brain, causing stroke. This is a prominent mechanism of stroke, accounting for about a third of all cases, with the heart being a prominent source of these emboli. This work presents our investigations towards developing numerical simulation frameworks for modeling the transport of embolic particles originating from the heart along the major arteries supplying the brain. The simulations are based on combining discrete particle method with image based computational fluid dynamics. Simulations of unsteady, pulsatile hemodynamics, and embolic particle transport within patient-specific geometries, with physiological boundary conditions, are presented. The analysis is focused on elucidating the distribution of particles, transport of particles in the head across the major cerebral arteries connected at the Circle of Willis, the role of hemodynamic variables on the particle trajectories, and the effect of considering one-way vs. two-way coupling methods for the particle-fluid momentum exchange. These investigations are aimed at advancing our understanding of embolic stroke using computational fluid dynamics techniques. This research was supported by the American Heart Association grant titled ``Embolic Stroke: Anatomic and Physiologic Insights from Image-Based CFD.''

  12. Plutonium isotopes in settling particles: transport and scavenging of Pu in the western Northwest Pacific.

    PubMed

    Zheng, Jian; Yamada, Masatoshi

    2006-07-01

    We examined the vertical distributions of 239+240Pu activity and 240Pu/239Pu atom ratio in settling particles and quantified the particulate 239+240Pu fluxes in the water column in the western Northwest Pacific. Settling particle samples were collected using sediment traps. Plutonium isotopes were analyzed using a sector field high-resolution ICP-MS. To the best of our knowledge, this is the first time that both Pu activity and Pu isotope ratio data have been obtained for settling particles in the Pacific Ocean. The high (>0.18) 240Pu/239Pu atom ratios in settling particles indicate that plutonium from the Pacific Proving Grounds (PPG) source in the central Pacific is transported toward the western Northwest Pacific. Evidence indicates that Pu scavenging onto the settling particles is strongly dependent upon the bulk mass flux. The results suggest that advective lateral transport of dissolved Pu from the open ocean to the ocean margin and removal of Pu into the margin sediments by particle scavenging is a common phenomenon in the Pacific Ocean. Plutonium can be considered as a useful tracer to study the transport and fate of other contaminants that readily adsorb to particles in marine environments. PMID:16856723

  13. Hydrodynamic controls on particle transport through heterogeneous porous media. Technical progress report

    SciTech Connect

    Silliman, S.E.; Babic, M.

    1993-09-28

    Sophisticated models of the movement of particles, particularly bacteria and viruses, through porous media have been developed, but have met with limited success when compared to field observations some argue that the poor predictive capabilities of the models are due in part to the fact that most of the sophisticated models are tied to an assumptions of homogeneity within the flow field. In previous work, the structure of random percolation fields has been investigated and suggests application of percolation theory to heterogeneous porous media. One conclusion from this study as applied to particle transport is that as the distribution of pore throat sizes takes on variation in the third dimension, the probability of finding a continuous flow path with large throat size increases. One interpretation of this work, within the current context, leads to an argument that a saturated medium will become more open to transport of particles as the medium takes on three dimensional structure. The central hypothesis of the current project is therefore be stated: Particles which are suspended within the pore fluids of media demonstrating three-dimensional heterogeneities will be transported at higher average velocities and with less trapping than particles which are suspended in the pore fluids of media demonstrating one- or two-dimensional heterogeneities. This dependence on dimension is a function of the dimensional character of the heterogeneity, the length scales of the heterogeneity, the size of the particles, the hydrodynamics of the flow field, the degree of saturation of the medium, and the medium/particle interaction.

  14. Commuter exposure to inhalable, thoracic and alveolic particles in various transportation modes in Delhi.

    PubMed

    Kumar, Pramod; Gupta, N C

    2016-01-15

    A public health concern is to understand the linkages between specific pollution sources and adverse health impacts. Commuting can be viewed as one of the significant-exposure activity in high-vehicle density areas. This paper investigates the commuter exposure to inhalable, thoracic and alveolic particles in various transportation modes in Delhi, India. Air pollution levels are significantly contributed by automobile exhaust and also in-vehicle exposure can be higher sometime than ambient levels. Motorcycle, auto rickshaw, car and bus were selected to study particles concentration along two routes in Delhi between Kashmere Gate and Dwarka. The bus and auto rickshaw were running on compressed natural gas (CNG) while the car and motorcycle were operated on gasoline fuel. Aerosol spectrometer was employed to measure inhalable, thoracic and alveolic particles during morning and evening rush hours for five weekdays. From the study, we observed that the concentration levels of these particles were greatly influenced by transportation modes. Concentrations of inhalable particles were found higher during morning in auto rickshaw (332.81 ± 90.97 μg/m(3)) while the commuter of bus exhibited higher exposure of thoracic particles (292.23 ± 110.45 μg/m(3)) and car commuters were exposed to maximum concentrations of alveolic particles (222.37 ± 26.56 μg/m(3)). We observed that in evening car commuters experienced maximum concentrations of all sizes of particles among the four commuting modes. Interestingly, motorcycle commuters were exposed to lower levels of inhalable and thoracic particles during morning and evening hours as compared to other modes of transport. The mean values were found greater than the median values for all the modes of transport suggesting that positive skewed distributions are characteristics of naturally occurring phenomenon. PMID:26439646

  15. A possible role for rat intestinal surfactant-like particles in transepithelial triacylglycerol transport.

    PubMed Central

    Mahmood, A; Yamagishi, F; Eliakim, R; DeSchryver-Kecskemeti, K; Gramlich, T L; Alpers, D H

    1994-01-01

    To further examine whether surfactant-like particles (DeSchryver-Kecskemeti, K., R. Eliakim, S. Carroll, W. F. Stenson, M. A. Moxley, and D. H. Alpers. 1989. J. Clin. Invest. 84:1355-1361) were involved in the transepithelial transport of lipid, alkaline phosphatase activity and surfactant-like particle content were measured in apical mucosal scrapings, enterocytes, lamina propria, and serum after inhibition of chylomicron transport. Serum triacylglycerol levels were decreased 60-76% by Pluronic L-81, fenfluramine, and choline deficiency compared with fat-fed controls. 5 h after triacylglycerol feed, alkaline phosphatase activity in all three experimental groups was decreased compared with controls by 52-69% in mucosal scrapings and by 33-72% in serum. A parallel decline (60%) in alkaline phosphatase activity occurred in the lamina propria of Pluronic-treated animals. Total particle content (measured by an ELISA using antiserum against purified particle) after Pluronic treatment was decreased in mucosal scrapings, lamina propria, and serum by 16, 22, and 29% at 3 h and by 33, 40, and 8%, respectively, at 5 h after fat feeding. In contrast, particle content was increased in enterocytes by 29% 3 h and by 8% 5 h after fat feeding. By electron microscopy, enterocytes from Pluronic- and fenfluramine-treated animals exhibited a two- to threefold increase in large intracellular cytoplasmic lipid globules and the appearance of lamellae in apposition, with a marked decrease in the number of surfactant-like particles overlying the brush border. These changes, produced by inhibition of chylomicron transport, in the distribution of surfactant-like particles and particle-bound alkaline phosphatase are consistent with a role for these particles in transepithelial triacylglycerol transport across and out of the enterocyte. Images PMID:8282824

  16. Comprehensive computer model for magnetron sputtering. II. Charged particle transport

    SciTech Connect

    Jimenez, Francisco J. Dew, Steven K.; Field, David J.

    2014-11-01

    Discharges for magnetron sputter thin film deposition systems involve complex plasmas that are sensitively dependent on magnetic field configuration and strength, working gas species and pressure, chamber geometry, and discharge power. The authors present a numerical formulation for the general solution of these plasmas as a component of a comprehensive simulation capability for planar magnetron sputtering. This is an extensible, fully three-dimensional model supporting realistic magnetic fields and is self-consistently solvable on a desktop computer. The plasma model features a hybrid approach involving a Monte Carlo treatment of energetic electrons and ions, along with a coupled fluid model for thermalized particles. Validation against a well-known one-dimensional system is presented. Various strategies for improving numerical stability are investigated as is the sensitivity of the solution to various model and process parameters. In particular, the effect of magnetic field, argon gas pressure, and discharge power are studied.

  17. Applications to particle transport in the Earth`s aurora

    SciTech Connect

    Jasperse, J.R.

    1994-12-31

    The visual display of light called the aurora borealis occurs when energetic (1 to 100-keV) electrons, protons, and hydrogen atoms from the Earth`s magnetosphere enter the Earth`s upper atmosphere and collide with the ambient neutral particles. Two kinds of auroras occur in nature: those excited by incident electrons and those excited by incident protons and hydrogen atoms. In this paper, we consider only the latter. The proton-hydrogen aurora may be divided into two altitude regions: high altitudes ({approximately}250 to {approximately}600 km) where charge-changing collisions dominate and energy-loss collisions may be neglected and low altitudes ({approximately}100 to {approximately}250 km) where energy-loss collisions also become important and cause rapid energy degradation. The focus of this review is on the high-altitude region where the one-group approximation is valid.

  18. Physical considerations relevant to HZE-particle transport in matter

    NASA Technical Reports Server (NTRS)

    Schimmerling, W.

    1988-01-01

    High-energy, highly charged (HZE) heavy nuclei may seem at first sight to be an exotic type of radiation, only remotely connected with nuclear power generation. On closer examination it becomes evident that heavy-ion accelerators are being seriously considered for driving inertial confinement fusion reactors, and high-energy heavy nuclei in the cosmic radiation are likely to place significant constraints on satellite power system deployment and space-based power generation. The use of beams of heavy nuclei in an increasing number of current applications, as well as their importance for the development of the state of the art of the future, makes it necessary to develop at the same time a good understanding of their transport through matter.

  19. Physical considerations relevant to HZE-particle transport in matter.

    PubMed

    Schimmerling, W

    1988-06-01

    High-energy, highly charged (HZE) heavy nuclei may seem at first sight to be an exotic type of radiation, only remotely connected with nuclear power generation. On closer examination it becomes evident that heavy-ion accelerators are being seriously considered for driving inertial confinement fusion reactors, and high-energy heavy nuclei in the cosmic radiation are likely to place significant constraints on satellite power system deployment and space-based power generation. The use of beams of heavy nuclei in an increasing number of current applications, as well as their importance for the development of the state of the art of the future, makes it necessary to develop at the same time a good understanding of their transport through matter. PMID:11539070

  20. Calculation of radiation therapy dose using all particle Monte Carlo transport

    DOEpatents

    Chandler, W.P.; Hartmann-Siantar, C.L.; Rathkopf, J.A.

    1999-02-09

    The actual radiation dose absorbed in the body is calculated using three-dimensional Monte Carlo transport. Neutrons, protons, deuterons, tritons, helium-3, alpha particles, photons, electrons, and positrons are transported in a completely coupled manner, using this Monte Carlo All-Particle Method (MCAPM). The major elements of the invention include: computer hardware, user description of the patient, description of the radiation source, physical databases, Monte Carlo transport, and output of dose distributions. This facilitated the estimation of dose distributions on a Cartesian grid for neutrons, photons, electrons, positrons, and heavy charged-particles incident on any biological target, with resolutions ranging from microns to centimeters. Calculations can be extended to estimate dose distributions on general-geometry (non-Cartesian) grids for biological and/or non-biological media. 57 figs.

  1. Calculation of radiation therapy dose using all particle Monte Carlo transport

    DOEpatents

    Chandler, William P.; Hartmann-Siantar, Christine L.; Rathkopf, James A.

    1999-01-01

    The actual radiation dose absorbed in the body is calculated using three-dimensional Monte Carlo transport. Neutrons, protons, deuterons, tritons, helium-3, alpha particles, photons, electrons, and positrons are transported in a completely coupled manner, using this Monte Carlo All-Particle Method (MCAPM). The major elements of the invention include: computer hardware, user description of the patient, description of the radiation source, physical databases, Monte Carlo transport, and output of dose distributions. This facilitated the estimation of dose distributions on a Cartesian grid for neutrons, photons, electrons, positrons, and heavy charged-particles incident on any biological target, with resolutions ranging from microns to centimeters. Calculations can be extended to estimate dose distributions on general-geometry (non-Cartesian) grids for biological and/or non-biological media.

  2. Studies on the Stimulating Nature of Uncouplers on the Electron Transport in BBY Particles.

    PubMed

    Li, Rong; Xu, Chun-He; Wang, Guo-Qiang

    1996-01-01

    BBY particles, which have kept the physicochemical property of PSII, were shown by transmission electron microscopy to possess no intact thylakoid membranes. The results of measuring 9-AA fluorescence quenching and millisecond Chl alpha delayed light emission proved that BBY particles were also unable to establish proton gradient across the membranes (deltapH) in light. Moreover, uncouplers gramicidin D and NH(4)Cl increased PSII electron transport in BBY particles only at low pH. This stimulation was more obvious around pH 6.0 than at other pH. The consistent stimulating value and pH-dependence indicated that the stimulating mechanisms of the two uncouplers are similar. From above, we infer that the uncouplers can bypass the proton transfer of localized pathway in BBY particles, stimulating the corresponding electron transport. PMID:12237701

  3. Inward particle transport at high collisionality in the Experimental Advanced Superconducting Tokamak

    NASA Astrophysics Data System (ADS)

    Wang, G. Q.; Ma, J.; Weiland, J.; Zang, Q.

    2013-10-01

    We have made the first drift wave study of particle transport in the Experimental Advanced Superconducting Tokamak (Wan et al., Nucl. Fusion 49, 104011 (2009)). The results reveal that collisions make the particle flux more inward in the high collisionality regime. This can be traced back to effects that are quadratic in the collision frequency. The particle pinch is due to electron trapping which is not very efficient in the high collisionality regime so the approach to equilibrium is slow. We have included also the electron temperature gradient (ETG) mode to give the right electron temperature gradient, since the Trapped Electron Mode (TE mode) is weak in this regime. However, at the ETG mode number ions are Boltzmann distributed so the ETG mode does not give particle transport.

  4. Particle trapping and transport achieved via an adjustable acoustic field above a phononic crystal plate

    NASA Astrophysics Data System (ADS)

    Wang, T.; Ke, M.; Qiu, C.; Liu, Z.

    2016-06-01

    We present the design for an acoustic system that can achieve particle trapping and transport using the acoustic force field above a phononic crystal plate. The phononic crystal plate comprised a thin brass plate with periodic slits alternately embedded with two kinds of elastic inclusions. Enhanced acoustic transmission and localized acoustic fields were achieved when the structure was excited by external acoustic waves. Because of the different resonant frequencies of the two elastic inclusions, the acoustic field could be controlled via the working frequency. Particles were transported between adjacent traps under the influence of the adjustable acoustic field. This device provides a new and versatile avenue for particle manipulation that would complement other means of particle manipulation.

  5. PARTICLE TRANSPORT AND DEPOSITION IN THE HOT-GAS FILTER AT WILSONVILLE

    SciTech Connect

    Goodarz Ahmadi

    1999-06-24

    Particle transport and deposition in the Wilsonville hot-gas filter vessel is studied. The filter vessel contains a total of 72 filters, which are arranged in two tiers. These are modeled by six upper and one lower cylindrical effective filters. An unstructured grid of 312,797 cells generated by GAMBIT is used in the simulations. The Reynolds stress model of FLUENT{trademark} (version 5.0) code is used for evaluating the gas mean velocities and root mean-square fluctuation velocities in the vessel. The particle equation of motion includes the drag, the gravitational and the lift forces. The turbulent instantaneous fluctuation velocity is simulated by a filtered Gaussian white-noise model provided by the FLUENT code. The particle deposition patterns are evaluated, and the effect of particle size is studied. The effect of turbulent dispersion, the lift force and the gravitational force are analyzed. The results show that the deposition pattern depends on particle size. Turbulent dispersion plays an important role in transport and deposition of particles. Lift and gravitational forces affect the motion of large particles, but has no effect on small particles.

  6. Mobilization and preferential transport of soil particles during infiltration: A core-scale modeling approach

    NASA Astrophysics Data System (ADS)

    Majdalani, Samer; Michel, Eric; di Pietro, Liliana; Angulo-Jaramillo, Rafael; Rousseau, Marine

    2007-05-01

    Understanding particle movement in soils is a major concern for both geotechnics and soil physics with regard to environmental protection and water resources management. This paper describes a model for mobilization and preferential transport of soil particles through structured soils. The approach combines a kinematic-dispersive wave model for preferential water flow with a convective-dispersive equation subject to a source/sink term for particle transport and mobilization. Particle detachment from macropore walls is considered during both the steady and transient water flow regimes. It is assumed to follow first-order kinetics with a varying detachment efficiency, which depends on the history of the detachment process. Estimates of model parameters are obtained by comparing simulations with experimental particle breakthrough curves obtained during infiltrations through undisturbed soil columns. Both water flux and particle concentrations are satisfactorily simulated by the model. Particle mobilization parameters favoring both attachment and detachment of particles are related to the incoming solution ionic strength by a Fermi-type function.

  7. TRANSPORT OF ELM ENERGY AND PARTICLES INTO THE SOL AND DIVERTOR OF DIII-D

    SciTech Connect

    LEONARD,AW; OSBORNE,TH; FENSTERMACHER,ME; GROEBNER,RJ; GROTH,M; LASNIER,CJ; MAHDAVI,MA; PETRIE,TW; SNYDER,PB; WATKINS,JG; ZENG,L

    2002-11-01

    A271 TRANSPORT OF ELM ENERGY AND PARTICLES INTO THE SOL AND DIVERTOR OF DIII-D. The reduction in size of Type I edge localized models (ELMs) with increasing density is explored in DIII-D for the purpose of studying the underlying transport of ELM energy. The separate convective and conductive transport of energy due to an ELM is determined by Thomson scattering measurements of electron density and temperature in the pedestal. The conductive transport from the pedestal during an ELM decreases with increasing density, while the convective transport remains nearly constant. The scaling of the ELM energy loss is compared with an edge stability model. The role of the divertor sheath in limiting energy loss from the pedestal during an ELM is explored. Evidence of outward radial transport to the midplane wall during an ELM is also presented.

  8. Fluctuation-Induced Particle Transport and Density Relaxation in a Stochastic Magnetic Field

    NASA Astrophysics Data System (ADS)

    Brower, David L.

    2009-11-01

    Particle transport and density relaxation associated with electromagnetic fluctuations is an unresolved problem of long standing in plasma physics and magnetic fusion research. In toroidal fusion plasmas, magnetic field fluctuations can arise spontaneously from global MHD instabilities, e.g., tearing fluctuations associated with sawtooth oscillations. Resonant magnetic perturbations (RMP) have also been externally imposed to mitigate the effect of edge localized modes (ELMs) by locally enhancing edge transport in Tokamaks. Understanding stochastic-field-driven transport processes is thus not only of basic science interest but possibly critical to ELM control in ITER. We report on the first direct measurement of magnetic fluctuation-induced particle transport in the core of a high-temperature plasma, the MST reversed field pinch. Measurements focus on the sawtooth crash, when the stochastic field resulting from tearing reconnection is strongest, and are accomplished using newly developed, laser-based, differential interferometry and Faraday rotation techniques. The measured electron particle flux, resulting from the correlated product of electron density (δn) and radial magnetic fluctuations (δbr), accounts for density profile relaxation during these magnetic reconnection events. Surprisingly, the electron diffusion is 30 times larger than estimates of ambipolarity-constrained transport in a stochastic magnetic field. A significant ion flux associated with parallel ion flow velocity fluctuations (δvi,//) correlated with δbr appears responsible for transport larger than predictions from the quasi-linear test particle model. These results indicate the need for improved understanding of particle transport in a stochastic magnetic field. Work performed in collaboration with W.X. Ding, W.F. Bergerson, T.F. Yates, UCLA; D.J. Den Hartog, G. Fiksel, S.C. Prager, J.S. Sarff and the MST Group, University of Wisconsin-Madison.

  9. Gyrokinetic simulations of mesoscale energetic particle-driven Alfvenic turbulent transport embedded in microturbulence

    SciTech Connect

    Bass, E. M.; Waltz, R. E.

    2010-11-15

    Energetic particle (EP) transport from local high-n toroidal Alfven eigenmodes (TAEs) and energetic particle modes (EPMs) is simulated with a gyrokinetic code. Linear and nonlinear simulations have identified a parameter range where the longwave TAE and EPM are unstable alongside the well-known ion-temperature-gradient (ITG) and trapped-electron-mode (TEM) instabilities. A new eigenvalue solver in GYRO facilitates this mode identification. States of nonlinearly saturated local TAE/EPM turbulent intensity are identified, showing a 'soft' transport threshold for enhanced energetic particle transport against the TAE/EPM drive from the EP pressure gradient. The very long-wavelength (mesoscale) TAE/EPM transport is saturated partially by nonlinear interaction with microturbulent ITG/TEM-driven zonal flows. Fixed-gradient-length, nonlinearly saturated states are accessible over a relatively narrow range of EP pressure gradient. Within this range, and in the local limit employed, TAE/EPM-driven transport more closely resembles drift-wave microturbulent transport than 'stiff' ideal MHD transport with a clamped critical total pressure gradient. At a higher, critical EP pressure gradient, fixed-gradient nonlinear saturation fails: EP transport increases without limit and background transport decreases. Presumably saturation is then obtained by relaxation of the EP pressure gradient to near this critical EP pressure gradient. If the background plasma gradients driving the ITG/TEM turbulence and zonal flows are weakened, the critical gradient collapses to the TAE/EPM linear stability threshold. Even at the critical EP pressure gradient there is no evidence that TAE/EPM instability significantly increases transport in the background plasma channels.

  10. Productivity control of fine particle transport to equatorial Pacific sediment

    NASA Astrophysics Data System (ADS)

    Thomas, E.; Turekian, K. K.; Wei, K.-Y.

    2000-09-01

    Accumulation rates of 3He (from cosmic dust), 230Th (produced in the water column), barite (produced in the water column during decay of organic matter), and Fe and Ti (arriving with wind-borne dust) all are positively correlated in an equatorial Pacific core (TT013-PC72; 01.1°N, 139.4°W; water depth 4298 m). These accumulation rates are also positively correlated with the accumulation rates of noncarbonate material. They are not significantly correlated to the mass accumulation rate of carbonate, which makes up the bulk of the sediment. The fluctuations in accumulation rates of these various components from different sources thus must result from variations in some process within the oceans and not from variations in their original sources. Sediment focusing by oceanic bottom currents has been proposed as this process [Marcantonio et al., 1996]. We argue that the variations in the accumulation rates of all these components are dominantly linked to changes in productivity and particle scavenging (3He, 230Th, Fe, Ti) by fresh phytoplankton detritus (which delivers Ba upon its decay) in the equatorial Pacific upwelling region. We speculate that as equatorial Pacific productivity is a major component of global oceanic productivity, its variations over time might be reflected in variations in atmospheric levels of methanesulfonic acid (an atmospheric reaction product of dimethyl sulfide, which is produced by oceanic phytoplankton) and recorded in Antarctic ice cores.

  11. A two-equation integral model for particle transport in renewal statistical media

    SciTech Connect

    Zuchuat, O.; Sanchez, R.

    1995-12-31

    The authors consider the problem of particle transport including scattering in renewal statistical media. The general description of this problem leads to an infinite hierarchy of equations. A new closure scheme is developed to obtain a more tractable set of equations. Numerical results in planar geometry are given which compare the predictions of this new closure with exact benchmark results as well as with a previous model available in the literature. The development of the new closure and the comparisons the authors make underline the importance of having a physical basis in the elaboration of closure schemes for the hierarchy of equations describing the transport of particle with collisions in stochastic mixtures.

  12. Wave-Particle Decorrelation and Transport of Anisotropic Turbulence in Collisionless Plasmas

    SciTech Connect

    Lin, Z.; Holod, I.; Chen, L.; Diamond, P. H.; Hahm, T. S.; Ethier, S.

    2007-12-31

    Comprehensive analysis of the largest first-principles simulations to date shows that stochastic wave-particle decorrelation is the dominant mechanism responsible for electron heat transport driven by electron temperature gradient turbulence with extended radial streamers. The transport is proportional to the local fluctuation intensity, and phase-space island overlap leads to a diffusive process with a time scale comparable to the wave-particle decorrelation time, determined by the fluctuation spectral width. This kinetic time scale is much shorter than the fluid time scale of eddy mixing.

  13. Particle transport after pellet injection in the TJ-II stellarator

    NASA Astrophysics Data System (ADS)

    Velasco, J. L.; McCarthy, K. J.; Panadero, N.; Satake, S.; López-Bruna, D.; Alonso, A.; Calvo, I.; Dinklage, A.; Estrada, T.; Fontdecaba, J. M.; Hernández, J.; García, R.; Medina, F.; Ochando, M.; Pastor, I.; Perfilov, S.; Sánchez, E.; Soleto, A.; Van Milligen, B. Ph; Zhezhera, A.; the TJ-II Team

    2016-08-01

    We study radial particle transport in stellarator plasmas using cryogenic pellet injection. By means of perturbative experiments, we estimate the experimental particle flux and compare it with neoclassical simulations. Experimental evidence is obtained of the fact that core depletion in helical devices can be slowed-down even by pellets that do not reach the core region. This phenomenon is well captured by neoclassical predictions with DKES and FORTEC-3D.

  14. Commuter exposure to ultrafine particles in different urban locations, transportation modes and routes

    NASA Astrophysics Data System (ADS)

    Ragettli, Martina S.; Corradi, Elisabetta; Braun-Fahrländer, Charlotte; Schindler, Christian; de Nazelle, Audrey; Jerrett, Michael; Ducret-Stich, Regina E.; Künzli, Nino; Phuleria, Harish C.

    2013-10-01

    A better understanding of ultrafine particle (UFP) exposure in different urban transport microenvironments is important for epidemiological exposure assessments and for policy making. Three sub-studies were performed to characterize personal exposure to UFP concentration and average particle size distribution diameters in frequently traveled commuter microenvironments in the city of Basel, Switzerland. First, the spatial variation of sidewalk UFP exposures within urban areas and transport-specific microenvironments was explored. Second, exposure to UFP concentration and average particle size were quantified for five modes of transportation (walking, bicycle, bus, tram, car) during different times of the day and week, along the same route. Finally, the contribution of bicycle commuting along two different routes (along main roads, away from main roads) to total daily exposures was assessed by 24-h personal measurements. In general, smaller average particle sizes and higher UFP levels were measured at places and for travel modes in close proximity to traffic. Average trip UFP concentrations were higher in car (31,784 particles cm-³) and on bicycle (22,660 particles cm-³) compared to walking (19,481 particles cm-³) and public transportation (14,055-18,818 particles cm-³). Concentrations were highest for all travel modes during weekday morning rush hours, compared to other time periods. UFP concentration was lowest in bus, regardless of time period. Bicycle travel along main streets between home and work place (24 min on average) contributed 21% and 5% to total daily UFP exposure in winter and summer, respectively. Contribution of bicycle commutes to total daily UFP exposure could be reduced by half if main roads are avoided. Our results show the importance of considering commuter behavior and route choice in exposure assessment studies.

  15. Transport equations for low-energy solar particles in evolving interplanetary magnetic fields

    NASA Technical Reports Server (NTRS)

    Ng, C. K.

    1988-01-01

    Two new forms of a simplified Fokker-Planck equation are derived for the transport of low-energy solar energetic particles in an evolving interplanetary magnetic field, carried by a variable radial solar wind. An idealized solution suggests that the 'invariant' anisotropy direction reported by Allum et al. (1974) may be explained within the conventional theoretical framework. The equations may be used to relate studies of solar particle propagation to solar wind transients, and vice versa.

  16. Self-propelled particles that transport cargo through flowing blood and halt hemorrhage

    PubMed Central

    Baylis, James R.; Yeon, Ju Hun; Thomson, Max H.; Kazerooni, Amir; Wang, Xu; St. John, Alex E.; Lim, Esther B.; Chien, Diana; Lee, Anna; Zhang, Jesse Q.; Piret, James M.; Machan, Lindsay S.; Burke, Thomas F.; White, Nathan J.; Kastrup, Christian J.

    2015-01-01

    Delivering therapeutics deep into damaged tissue during bleeding is challenging because of the outward flow of blood. When coagulants cannot reach and clot blood at its source, uncontrolled bleeding can occur and increase surgical complications and fatalities. Self-propelling particles have been proposed as a strategy for transporting agents upstream through blood. Many nanoparticle and microparticle systems exhibiting autonomous or collective movement have been developed, but propulsion has not been used successfully in blood or used in vivo to transport therapeutics. We show that simple gas-generating microparticles consisting of carbonate and tranexamic acid traveled through aqueous solutions at velocities of up to 1.5 cm/s and delivered therapeutics millimeters into the vasculature of wounds. The particles transported themselves through a combination of lateral propulsion, buoyant rise, and convection. When loaded with active thrombin, these particles worked effectively as a hemostatic agent and halted severe hemorrhage in multiple animal models of intraoperative and traumatic bleeding. Many medical applications have been suggested for self-propelling particles, and the findings of this study show that the active self-fueled transport of particles can function in vivo to enhance drug delivery. PMID:26601282

  17. Self-propelled particles that transport cargo through flowing blood and halt hemorrhage.

    PubMed

    Baylis, James R; Yeon, Ju Hun; Thomson, Max H; Kazerooni, Amir; Wang, Xu; St John, Alex E; Lim, Esther B; Chien, Diana; Lee, Anna; Zhang, Jesse Q; Piret, James M; Machan, Lindsay S; Burke, Thomas F; White, Nathan J; Kastrup, Christian J

    2015-10-01

    Delivering therapeutics deep into damaged tissue during bleeding is challenging because of the outward flow of blood. When coagulants cannot reach and clot blood at its source, uncontrolled bleeding can occur and increase surgical complications and fatalities. Self-propelling particles have been proposed as a strategy for transporting agents upstream through blood. Many nanoparticle and microparticle systems exhibiting autonomous or collective movement have been developed, but propulsion has not been used successfully in blood or used in vivo to transport therapeutics. We show that simple gas-generating microparticles consisting of carbonate and tranexamic acid traveled through aqueous solutions at velocities of up to 1.5 cm/s and delivered therapeutics millimeters into the vasculature of wounds. The particles transported themselves through a combination of lateral propulsion, buoyant rise, and convection. When loaded with active thrombin, these particles worked effectively as a hemostatic agent and halted severe hemorrhage in multiple animal models of intraoperative and traumatic bleeding. Many medical applications have been suggested for self-propelling particles, and the findings of this study show that the active self-fueled transport of particles can function in vivo to enhance drug delivery. PMID:26601282

  18. A Radiation Transport Coupled Particle-In-Cell Model for Hg-Ar Discharges

    NASA Astrophysics Data System (ADS)

    Lee, Hae June; Verboncoeur, J. P.; Smith, H. B.; Parker, G. J.; Birdsall, C. K.

    2000-10-01

    We simulate a radial slice of the fluorescent lamp discharge in the positive column with a radiation transport coupled particle-in-cell (RT-PIC) code. In this model, the radiative and meta stable excited states of Hg-Ar mixture and their collisions as well as radiation transport are simulated by the fluid equations. The motions of electrons and ions and collisions with neutral or excited states are simulated by the conventional particle-in-cell method. We consider radiation transport of excited states using the Holstein equation[1] including the time varying nonuniform background gas density. The background gas density is calculated from the temperature profile by solving the heat transfer equation. The motion of charged particles are simulated by using the 1-D cylindrical particle-in-cell code, XPDC1[2]. Separate time scales are used for the charged particles, the excited states, and the neutral gas, respectively, and parallel processing can be used for the expensive calculation including radiation transport. This work was supported in part by General Electric Company contract GE-20000181. [1] T. Holstein, Phys. Rev. 72, 1213 (1947). [2] J. P. Verboncoeur, M. V. Alves, V. Vahedi, and C. K. Birdsall, Journal of Computational Physics 104(2), 321, (1993).

  19. Modeling of Particle Transport on Channels and Gaps Exposed to Plasma Fluxes

    NASA Astrophysics Data System (ADS)

    Nieto-Pérez, Martin

    2008-04-01

    Many problems in particle transport in fusion devices involve the transport of plasma or eroded particles through channels or gaps, such as in the case of trying to assess damage to delicate optical diagnostics collecting light through a slit or determining the deposition and codeposition on the gaps between tiles of plasma-facing components. A dynamic-composition Monte Carlo code in the spirit of TRIDYN, previously developed to study composition changes on optical mirrors subject to ion bombardment, has been upgraded to include motion of particles through a volume defined by sets of plane surfaces. Particles sputtered or reflected from the walls of the channel/gap can be tracked as well, allowing the calculation of wall impurity transport, either back to the plasma (for the case of a gap) or to components separated from the plasma by a channel/slit (for the case of optical diagnostics). Two examples of the code application to particle transport in fusion devices will be presented in this work: one will evaluate the erosion/impurity deposition rate on a mirror separated from a plasma source by a slit; the other case will look at the enhanced emission of tile material in the region of the gap between two tiles.

  20. Energetic particle transport in the presence of magnetic turbulence: influence of spectral extension and intermittency

    NASA Astrophysics Data System (ADS)

    Pucci, F.; Malara, F.; Perri, S.; Zimbardo, G.; Sorriso-Valvo, L.; Valentini, F.

    2016-04-01

    The transport of energetic particles in the presence of magnetic turbulence is an important but unsolved problem of space physics and astrophysics. Here we aim at advancing the understanding of energetic particle transport by means of a new numerical model of synthetic magnetic turbulence. The model builds up a turbulent magnetic field as a superposition of space-localized fluctuations at different spatial scales. The resulting spectrum is isotropic with an adjustable spectral index. The model allows to reproduce a spectrum broader than four decades, and to regulate the level of intermittency through a technique based on the p-model. Adjusting the simulation parameters close to solar wind conditions at 1 AU, we inject ˜1 MeV protons in the turbulence realization and compute the parallel and perpendicular diffusion coefficients as a function of spectral extension, turbulence level, and intermittency. While a number of previous results are recovered in the appropriate limits, including anomalous transport regimes for low turbulence levels, we find that long spectral extensions tend to reduce the diffusion coefficients. Furthermore, we find for the first time that intermittency has an influence on parallel transport but not on perpendicular transport, with the parallel diffusion coefficient increasing with the level of intermittency. We also obtain the distribution of particle inversion times for parallel velocity, a power law for more than one decade, and compare it with the pitch angle scattering times observed in the solar wind. This parametric study can be useful to interpret particle propagation properties in astrophysical systems.

  1. Energetic particle transport in the presence of magnetic turbulence: influence of spectral extension and intermittency

    NASA Astrophysics Data System (ADS)

    Pucci, F.; Malara, F.; Perri, S.; Zimbardo, G.; Sorriso-Valvo, L.; Valentini, F.

    2016-07-01

    The transport of energetic particles in the presence of magnetic turbulence is an important but unsolved problem of space physics and astrophysics. Here, we aim at advancing the understanding of energetic particle transport by means of a new numerical model of synthetic magnetic turbulence. The model builds up a turbulent magnetic field as a superposition of space-localized fluctuations at different spatial scales. The resulting spectrum is isotropic with an adjustable spectral index. The model allows us to reproduce a spectrum broader than four decades, and to regulate the level of intermittency through a technique based on the p-model. Adjusting the simulation parameters close to solar wind conditions at 1 au, we inject ˜1 MeV protons in the turbulence realization and compute the parallel and perpendicular diffusion coefficients as a function of spectral extension, turbulence level, and intermittency. While a number of previous results are recovered in the appropriate limits, including anomalous transport regimes for low turbulence levels, we find that long spectral extensions tend to reduce the diffusion coefficients. Furthermore, we find for the first time that intermittency has an influence on parallel transport but not on perpendicular transport, with the parallel diffusion coefficient increasing with the level of intermittency. We also obtain the distribution of particle inversion times for parallel velocity, a power law for more than one decade, and compare it with the pitch angle scattering times observed in the solar wind. This parametric study can be useful to interpret particle propagation properties in astrophysical systems.

  2. Discrete elements method of neutral particle transport. Doctoral thesis

    SciTech Connect

    Mathews, K.A.

    1983-10-01

    A new 'discrete elements' (LN) transport method is derived and compared to the discrete ordinates SN method, theoretically and by numerical experimentation. The discrete elements method is more accurate than discrete ordinates and strongly ameliorates ray effects for the practical problems studied. The discrete elements method is shown to be more cost effective in terms of execution time with comparable storage to attain the same accuracy, for a one-dimensional test case using linear characteristic spatial quadrature. In a two-dimensional test case, a vacuum duct in a shield, LN is more consistently convergent toward a Monte Carlo benchmark solution than SN, using step characteristic spatial quadrature. An analysis of the interaction of angular and spatial quadrature in xy-geometry indicates the desirability of using linear characteristic spatial quadrature with the LN method. The discrete elements method is based on discretizing the Boltzmann equation over a set of elements of angle. The zeroth and first angular moments of the directional flux, over each element, are estimated by numerical quadrature and yield a flux-weighted average streaming direction for the element. (Data for this estimation are fluxes in fixed directions calculated as in SN.)

  3. Unique DNA-barcoded aerosol test particles for studying aerosol transport

    DOE PAGESBeta

    Harding, Ruth N.; Hara, Christine A.; Hall, Sara B.; Vitalis, Elizabeth A.; Thomas, Cynthia B.; Jones, A. Daniel; Day, James A.; Tur-Rojas, Vincent R.; Jorgensen, Trond; Herchert, Edwin; et al

    2016-03-22

    Data are presented for the first use of novel DNA-barcoded aerosol test particles that have been developed to track the fate of airborne contaminants in populated environments. Until DNATrax (DNA Tagged Reagents for Aerosol eXperiments) particles were developed, there was no way to rapidly validate air transport models with realistic particles in the respirable range of 1–10 μm in diameter. The DNATrax particles, developed at Lawrence Livermore National Laboratory (LLNL) and tested with the assistance of the Pentagon Force Protection Agency, are the first safe and effective materials for aerosol transport studies that are identified by DNA molecules. The usemore » of unique synthetic DNA barcodes overcomes the challenges of discerning the test material from pre-existing environmental or background contaminants (either naturally occurring or previously released). The DNATrax particle properties are demonstrated to have appropriate size range (approximately 1–4.5 μm in diameter) to accurately simulate bacterial spore transport. As a result, we describe details of the first field test of the DNATrax aerosol test particles in a large indoor facility.« less

  4. Surfing along Filopodia: A Particle Transport Revealed by Molecular-Scale Fluctuation Analyses.

    PubMed

    Kohler, Felix; Rohrbach, Alexander

    2015-05-01

    Filopodia perform cellular functions such as environmental sensing or cell motility, but they also grab for particles and withdraw them leading to an increased efficiency of phagocytic uptake. Remarkably, withdrawal of micron-sized particles is also possible without noticeable movements of the filopodia. Here, we demonstrate that polystyrene beads connected by optical tweezers to the ends of adherent filopodia of J774 macrophages, are transported discontinuously toward the cell body. After a typical resting time of 1-2 min, the cargo is moved with alternating velocities, force constants, and friction constants along the surface of the filopodia. This surfing-like behavior along the filopodium is recorded by feedback-controlled interferometric three-dimensional tracking of the bead motions at 10-100 kHz. We measured transport velocities of up to 120 nm/s and transport forces of ∼ 70 pN. Small changes in position, fluctuation width, and temporal correlation, which are invisible in conventional microscopy, indicate molecular reorganization of transport-relevant proteins in different phases of the entire transport process. A detailed analysis implicates a controlled particle transport with fingerprints of a nanoscale unbinding/binding behavior. The manipulation and analysis methods presented in our study may also be helpful in other fields of cellular biophysics. PMID:25954870

  5. Surfing along Filopodia: A Particle Transport Revealed by Molecular-Scale Fluctuation Analyses

    PubMed Central

    Kohler, Felix; Rohrbach, Alexander

    2015-01-01

    Filopodia perform cellular functions such as environmental sensing or cell motility, but they also grab for particles and withdraw them leading to an increased efficiency of phagocytic uptake. Remarkably, withdrawal of micron-sized particles is also possible without noticeable movements of the filopodia. Here, we demonstrate that polystyrene beads connected by optical tweezers to the ends of adherent filopodia of J774 macrophages, are transported discontinuously toward the cell body. After a typical resting time of 1–2 min, the cargo is moved with alternating velocities, force constants, and friction constants along the surface of the filopodia. This surfing-like behavior along the filopodium is recorded by feedback-controlled interferometric three-dimensional tracking of the bead motions at 10–100 kHz. We measured transport velocities of up to 120 nm/s and transport forces of ∼70 pN. Small changes in position, fluctuation width, and temporal correlation, which are invisible in conventional microscopy, indicate molecular reorganization of transport-relevant proteins in different phases of the entire transport process. A detailed analysis implicates a controlled particle transport with fingerprints of a nanoscale unbinding/binding behavior. The manipulation and analysis methods presented in our study may also be helpful in other fields of cellular biophysics. PMID:25954870

  6. Elipsa is an early determinant of ciliogenesis that links the IFT particle to membrane-associated small GTPase Rab8.

    PubMed

    Omori, Yoshihiro; Zhao, Chengtian; Saras, Arunesh; Mukhopadhyay, Saikat; Kim, Woong; Furukawa, Takahisa; Sengupta, Piali; Veraksa, Alexey; Malicki, Jarema

    2008-04-01

    The formation and function of cilia involves the movement of intraflagellar transport (IFT) particles underneath the ciliary membrane, along axonemal microtubules. Although this process has been studied extensively, its molecular basis remains incompletely understood. For example, it is unknown how the IFT particle interacts with transmembrane proteins. To study the IFT particle further, we examined elipsa, a locus characterized by mutations that cause particularly early ciliogenesis defects in zebrafish. We show here that elipsa encodes a coiled-coil polypeptide that localizes to cilia. Elipsa protein binds to Ift20, a component of IFT particles, and Elipsa homologue in Caenorhabditis elegans, DYF-11, translocates in sensory cilia, similarly to the IFT particle. This indicates that Elipsa is an IFT particle polypeptide. In the context of zebrafish embryogenesis, Elipsa interacts genetically with Rabaptin5, a well-studied regulator of endocytosis, which in turn interacts with Rab8, a small GTPase, known to localize to cilia. We show that Rabaptin5 binds to both Elipsa and Rab8, suggesting that these proteins provide a bridging mechanism between the IFT particle and protein complexes that assemble at the ciliary membrane. PMID:18364699

  7. Numerical modeling of pollutant transport using a Lagrangian marker particle technique

    NASA Technical Reports Server (NTRS)

    Spaulding, M.

    1976-01-01

    A derivation and code were developed for the three-dimensional mass transport equation, using a particle-in-cell solution technique, to solve coastal zone waste discharge problems where particles are a major component of the waste. Improvements in the particle movement techniques are suggested and typical examples illustrated. Preliminary model comparisons with analytic solutions for an instantaneous point release in a uniform flow show good results in resolving the waste motion. The findings to date indicate that this computational model will provide a useful technique to study the motion of sediment, dredged spoils, and other particulate waste commonly deposited in coastal waters.

  8. PARTICLE TRANSPORT IN EVOLVING PROTOPLANETARY DISKS: IMPLICATIONS FOR RESULTS FROM STARDUST

    SciTech Connect

    Hughes, Anna L. H.; Armitage, Philip J.

    2010-08-20

    Samples returned from comet 81P/Wild 2 by the Stardust mission confirm that substantial quantities of crystalline silicates were incorporated into the comet at the time of its formation. We investigate the constraints that this observation places upon protoplanetary disk physics, under the assumption that outward transport of particles processed at high temperatures occurs via a combination of advection and turbulent diffusion in an evolving disk. We also look for possible constraints on the formation locations of such particles. Our results are based upon one-dimensional disk models that evolve with time under the action of viscosity and photoevaporative mass loss, and track solid transport using an ensemble of individual particle trajectories. We find that two broad classes of the disk model are consistent with the Stardust findings. One class of models features a high particle diffusivity (a Schmidt number, Sc < 1), which suffices to diffuse particles up to 20 {mu}m in size outward against the mean gas flow. For Sc {>=} 1 such models are unlikely to be viable and significant outward transport appears to require that the particles of interest settle into a midplane layer that experiences an outward gas flow. In either class of models, the mass of inner disk material that reaches the outer disk is a strong function of the initial compactness of the disk. Hence, models of grain transport within steady-state disks underestimate the efficiency of outward transport. Neither model results in sustained outward transport of very large particles exceeding a millimeter in size. We show that in most circumstances, the transport efficiency falls off rapidly with time. Hence, high-temperature material must be rapidly incorporated into icy bodies to avoid fallback to small radii. We suggest that significant radial transport may only occur during the initial phase of rapid disk evolution. It may also vary substantially between disks depending upon their initial mass

  9. Effect of particle settling on lidar profiles of long-range transported Saharan aerosols

    NASA Astrophysics Data System (ADS)

    Gasteiger, Josef; Groß, Silke

    2016-04-01

    A large amount of desert aerosol is transported in the Saharan Air Layer (SAL) westwards from Africa over the Atlantic Ocean. Lidar profiles of transported Saharan aerosol may contain some information about the vertically-resolved aerosol microphysics that could be used to characterize processes that affected the measured aerosol during transport. We present modelled lidar profiles of long-range transported Saharan aerosol assuming that initially the SAL is well-mixed and that there is no vertical mixing of air within the SAL as soon as it reaches the Atlantic. We consider Stokes gravitational settling of aerosol particles over the ocean. The lidar profiles are calculated using optical models for irregularly-shaped mineral dust particles assuming settling-induced particle removal as function of distance from the SAL top. Within the SAL we find a decrease of both the backscatter coefficients and the linear depolarization ratios with decreasing distance from the SAL top. For example, the linear depolarization ratio at a wavelength of 532nm decreases from 0.289 at 1000m to 0.256 at 200m and 0.215 at 100m below SAL top. We compare the modelled backscatter coefficients and linear depolarization ratios to ground-based lidar measurements performed during the SALTRACE field campaign in Barbados (Caribbean) and find agreement within the estimated uncertainties. We discuss the uncertainties of our modeling approach in our presentation. Assumed mineral dust particle shapes, assumed particle mixture properties, and assumptions about processes in the SAL over the continent and the ocean are important aspects to be considered. Uncertainties are relevant for the potential of lidar measurements of transported Saharan dust to learn something about processes occuring in the SAL during long-range transport. We also compare our modeling results to modeling results previously published in the literature.

  10. Transport and selective chaining of bidisperse particles in a travelling wave potential.

    PubMed

    Tierno, Pietro; Straube, Arthur V

    2016-05-01

    We combine experiments, theory and numerical simulation to investigate the dynamics of a binary suspension of paramagnetic colloidal particles dispersed in water and transported above a stripe-patterned magnetic garnet film. The substrate generates a one-dimensional periodic energy landscape above its surface. The application of an elliptically polarized rotating magnetic field causes the landscape to translate, inducing direct transport of paramagnetic particles placed above the film. The ellipticity of the applied field can be used to control and tune the interparticle interactions, from net repulsive to net attractive. When considering particles of two distinct sizes, we find that, depending on their elevation above the surface of the magnetic substrate, the particles feel effectively different potentials, resulting in different mobilities. We exploit this feature to induce selective chaining for certain values of the applied field parameters. In particular, when driving two types of particles, we force only one type to condense into travelling parallel chains. These chains confine the movement of the other non-chaining particles within narrow colloidal channels. This phenomenon is explained by considering the balance of pairwise magnetic forces between the particles and their individual coupling with the travelling landscape. PMID:27194527

  11. The mechanism of particles transport induced by electrostatic perturbation in tokamak

    SciTech Connect

    Feng, Zhichen; Qiu, Zhiyong; Sheng, Zhengmao

    2013-12-15

    Particle transport in tokamak devices due to wave-particle resonance induced diffusion is studied. The diffusion coefficient is derived both analytically using quasilinear theory, and numerically using a test particle code, and the obtained diffusion coefficient agrees with each other in its validity regime. Dependence of the diffusion coefficient on turbulence intensity, turbulence radial mode structures, and particle energy is investigated. It is found that the diffusion coefficient is proportional to the turbulence intensity, and the diffusion is maximized for E{sub t}≃T{sub i}, and k{sub r}Δ{sub 0}≃1. Here, E{sub t} is the test particle energy, T{sub i} is the thermal ion temperature, Δ{sub 0} is the distance between neighboring mode rational surfaces, and 1/k{sub r} is the half width of the fine radial mode structure on each rational surface.

  12. Simulation of Energetic Particle Transport and Acceleration at Shock Waves in a Focused Transport Model: Implications for Mixed Solar Particle Events

    NASA Astrophysics Data System (ADS)

    Kartavykh, Y. Y.; Dröge, W.; Gedalin, M.

    2016-03-01

    We use numerical solutions of the focused transport equation obtained by an implicit stochastic differential equation scheme to study the evolution of the pitch-angle dependent distribution function of protons in the vicinity of shock waves. For a planar stationary parallel shock, the effects of anisotropic distribution functions, pitch-angle dependent spatial diffusion, and first-order Fermi acceleration at the shock are examined, including the timescales on which the energy spectrum approaches the predictions of diffusive shock acceleration theory. We then consider the case that a flare-accelerated population of ions is released close to the Sun simultaneously with a traveling interplanetary shock for which we assume a simplified geometry. We investigate the consequences of adiabatic focusing in the diverging magnetic field on the particle transport at the shock, and of the competing effects of acceleration at the shock and adiabatic energy losses in the expanding solar wind. We analyze the resulting intensities, anisotropies, and energy spectra as a function of time and find that our simulations can naturally reproduce the morphologies of so-called mixed particle events in which sometimes the prompt and sometimes the shock component is more prominent, by assuming parameter values which are typically observed for scattering mean free paths of ions in the inner heliosphere and energy spectra of the flare particles which are injected simultaneously with the release of the shock.

  13. Selective transport of Fe(III) using ionic imprinted polymer (IIP) membrane particle

    NASA Astrophysics Data System (ADS)

    Djunaidi, Muhammad Cholid; Jumina, Siswanta, Dwi; Ulbricht, Mathias

    2015-12-01

    The membrane particles was prepared from polyvinyl alcohol (PVA) and polymer IIP with weight ratios of 1: 2 and 1: 1 using different adsorbent templates and casting thickness. The permeability of membrane towards Fe(III) and also mecanism of transport were studied. The selectivity of the membrane for Fe(III) was studied by performing adsorption experiments also with Cr(III) separately. In this study, the preparation of Ionic Imprinted Polymer (IIP) membrane particles for selective transport of Fe (III) had been done using polyeugenol as functional polymer. Polyeugenol was then imprinted with Fe (III) and then crosslinked with PEGDE under alkaline condition to produce polyeugenol-Fe-PEGDE polymer aggregates. The agrregates was then crushed and sieved using mesh size of 80 and the powder was then used to prepare the membrane particles by mixing it with PVA (Mr 125,000) solution in 1-Methyl-2-pyrrolidone (NMP) solvent. The membrane was obtained after casting at a speed of 25 m/s and soaking in NaOH solution overnight. The membrane sheet was then cut and Fe(III) was removed by acid to produce IIP membrane particles. Analysis of the membrane and its constituent was done by XRD, SEM and size selectivity test. Experimental results showed the transport of Fe(III) was faster with the decrease of membrane thickness, while the higher concentration of template ion correlates with higher Fe(III) being transported. However, the transport of Fe(III) was slower for higher concentration of PVA in the membrane. IImparticles works through retarded permeation mechanism, where Fe(III) was bind to the active side of IIP. The active side of IIP membrane was dominated by the -OH groups. The selectivity of all IIP membranes was confirmed as they were all unable to transport Cr (III), while NIP (Non-imprinted Polymer) membrane was able transport Cr (III).

  14. Particle simulation model of transport in a bounded, Coulomb collisional plasma

    SciTech Connect

    Procassini, R.J.; Birdsall, C.K. )

    1991-08-01

    The transport of particles and energy in a fully ionized, collisional plasma is studied through the use of a kinetic transport model. A particle-in-cell (PIC) code has been coupled to a Monte Carlo, binary particle model of Coulomb collisions, to provide a fully kinetic, self-consistent description of transport and potential formation in a single spatial dimension and two velocity components (parallel and perpendicular to the spatial coordinate). The dependence of plasma transport on Coulomb collisionality is investigated by varying the normalized collision frequency within the range 10{sup {minus}2}{le}{nu}{sub *}{equivalent to}{nu}{sub {ital c}0}/{nu}{sub {ital be}0}{le}5, where {nu}{sub {ital c}0} is the average electron/ion collision frequency and {nu}{sub {ital be}0} is the frequency at which thermal electrons bounce between the collector sheath potential drops located adjacent to the absorbing plates at each end of the system. Collisions between charged-plasma and recycled-neutral particles are omitted in this study. For finite values of {nu}{sub *}, the heat conduction flux is found to be reduced from the value predicted by classical, hydrodynamic transport theory. The electron heat conduction flux is shown to lie between 12% and 21% of the free-streaming thermal flux {ital q}{sup {ital e}}{sub {ital fs}}{equivalent to}{ital n}{sub {ital e}v}{sub {parallel},{ital te}}{ital kT}{sub {ital e}}, where {ital n}{sub {ital e}}, {ital v}{sub {parallel},{ital te}}, and {ital kT}{sub {ital e}} are the steady-state values of the electron density, parallel thermal velocity, and temperature, respectively. The variation of several transport quantities with collisionality is presented, and the results are compared against those from other collisional plasma transport models.

  15. Modeling bimolecular reactions and transport in porous media via particle tracking

    NASA Astrophysics Data System (ADS)

    Ding, Dong; Benson, David A.; Paster, Amir; Bolster, Diogo

    2013-03-01

    We use a particle-tracking method to simulate several one-dimensional bimolecular reactive transport experiments. In our numerical scheme, the reactants are represented by particles: advection and dispersion dominate the flow, and molecular diffusion dictates, in large part, the reactions. The particle/particle reactions are determined by a combination of two probabilities dictated by the physics of transport and energetics of reaction. The first is that reactant particles occupy the same volume over a short time interval. The second is the conditional probability that two collocated particles favorably transform into a reaction. The first probability is a direct physical representation of the degree of mixing in an advancing interface between dissimilar waters, and as such lacks empirical parameters except for the user-defined number of particles. This number can be determined analytically from concentration autocovariance, if this type of data is available. The simulations compare favorably to two physical experiments. In one, the concentration of product, 1,2-naphthoquinoe-4-aminobenzene (NQAB) from reaction between 1,2-naphthoquinone-4-sulfonic acid (NQS) and aniline (AN), was measured at the outflow of a column filled with glass beads at different times. In the other, the concentration distribution of reactants (CuSO and EDTA) and product (CuEDTA) were quantified by snapshots of light transmitted through a column packed with cryolite sand. These snapshots allow us to estimate concentration statistics and calculate the required number of particles. The experiments differ significantly due to a ˜107 difference in thermodynamic rate coefficients, making the latter experiment effectively instantaneous. When compared to the solution of the advection-dispersion-reaction equation (ADRE) with the well-mixed reaction coefficient, the experiments and the particle-tracking simulations showed on the order of 20-40% less overall product, which is attributed to poor mixing

  16. TRANSPORT AND DEPOSITION OF NANO-SIZE PARTICLES IN THE UPPER HUMAN RESPIRATORY AIRWAYS

    EPA Science Inventory

    TRANSPORT AND DEPOSITION OF NANO-SIZE PARTICLES IN THE UPPER HUMAN RESPIRATORY AIRWAYS. Zhe Zhang*, Huawei Shi, Clement Kleinstreuer, Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695-7910; Chong S. Kim, National Health and En...

  17. From Mechanical Motion to Brownian Motion, Thermodynamics and Particle Transport Theory

    ERIC Educational Resources Information Center

    Bringuier, E.

    2008-01-01

    The motion of a particle in a medium is dealt with either as a problem of mechanics or as a transport process in non-equilibrium statistical physics. The two kinds of approach are often unrelated as they are taught in different textbooks. The aim of this paper is to highlight the link between the mechanical and statistical treatments of particle…

  18. Using Cytochome c to Monitor Electron Transport and Inhibition in Beef Heart Submitochondrial Particles

    ERIC Educational Resources Information Center

    Melin, Amanda D.; Lohmeier-Vogel, Elke M.

    2004-01-01

    We present a two-part undergraduate laboratory exercise. In the first part, electron transport in bovine heart submitochondrial particles causing reduction of cytochrome c is monitored at 550 nm. Redox-active dyes have historically been used in most previous undergraduate laboratory exercises of this sort but do not demonstrate respiratory…

  19. Enhanced transport of Si-coated nanoscale zero-valent iron particles in porous media.

    PubMed

    HonetschlÄgerová, Lenka; Janouškovcová, Petra; Kubal, Martin

    2016-01-01

    Laboratory column experiments were conducted to evaluate the effect of previously described silica coating method on the transport of nanoscale zero-valent iron (nZVI) in porous media. The silica coating method showed the potential to prevent the agglomeration of nZVI. Transport experiments were conducted using laboratory-scale sand-packed columns at conditions that were very similar of natural groundwater. Transport properties of non-coated and silica-coated nZVI are investigated in columns of 40 cm length, which were filled with porous media. A suspension was injected in three different Fe particle concentrations (100, 500, and 1000 mg/L) at flow 5  mL/min. Experimental results were compared using nanoparticle attachment efficiency and travel distances which were calculated by classical particle filtration theory. It was found that non-coated particles were essentially immobile in porous media. In contrast, silica-coated particles showed significant transport distances at the tested conditions. Results of this study suggest that silica can increase nZVI mobility in the subsurface. PMID:26582314

  20. Electrical asymmetry effect for controlling the transport of micrometer-sized particles in capacitively coupled plasmas

    NASA Astrophysics Data System (ADS)

    Iwashita, Shinya; Schuengel, Edmund; Schulze, Julian; Uchida, Giichiro; Koga, Kazunori; Hartmann, Peter; Shiratani, Masaharu; Donko, Zoltan; Czarnetzki, Uwe

    2012-10-01

    We have developed a novel method to control the dust particle transport in capacitively coupled plasmas via the electrical asymmetry effect (EAE) [1]. At low pressures the EAE allows controlling the spatial potential profile and the ion density distribution by adjusting the phase angle between a fundamental frequency and its second harmonic, resulting in control of forces exerted on dust particles such as electrostatic and ion drag forces. We report the experimental results of this method using SiO2 particles of 1.5 μm in size, which are inserted into an argon discharge. Initially dust particles tend to be confined at the sheath edge near the bottom electrode, and the change of their equilibrium position with plasma due to the adiabatic phase shift can be well understood by the electric field profile obtained from a simple analytical model. By applying the abrupt change of phase angle from 90 to 0 dust particles are transported between both sheaths through the plasma bulk [1]. Based on the model of this transport [1] the potential profile can be obtained by experimental results.[4pt] [1] Iwashita S et al., Plasma Sources Sci. Technol. 21 (2012) 032001.

  1. Transport control of dust particles via the electrical asymmetry effect: experiment, simulation and modelling

    NASA Astrophysics Data System (ADS)

    Iwashita, Shinya; Schüngel, Edmund; Schulze, Julian; Hartmann, Peter; Donkó, Zoltán; Uchida, Giichiro; Koga, Kazunori; Shiratani, Masaharu; Czarnetzki, Uwe

    2013-06-01

    The control of the spatial distribution of micrometre-sized dust particles in capacitively coupled radio frequency discharges is relevant for research and applications. Typically, dust particles in plasmas form a layer located at the sheath edge adjacent to the bottom electrode. Here, a method of manipulating this distribution by the application of a specific excitation waveform, i.e. two consecutive harmonics, is discussed. Tuning the phase angle θ between the two harmonics allows one to adjust the discharge symmetry via the electrical asymmetry effect (EAE). An adiabatic (continuous) phase shift leaves the dust particles at an equilibrium position close to the lower sheath edge. Their levitation can be correlated with the electric field profile. By applying an abrupt phase shift the dust particles are transported between both sheaths through the plasma bulk and partially reside at an equilibrium position close to the upper sheath edge. Hence, the potential profile in the bulk region is probed by the dust particles providing indirect information on plasma properties. The respective motion is understood by an analytical model, showing both the limitations and possible ways of optimizing this sheath-to-sheath transport. A classification of the transport depending on the change in the dc self-bias is provided, and the pressure dependence is discussed.

  2. Methodologies for Removing/Desorbing and Transporting Particles from Surfaces to Instrumentation

    NASA Astrophysics Data System (ADS)

    Miller, Carla J.; Cespedes, Ernesto R.

    2012-12-01

    Explosive trace detection (ETD) continues to be a key technology supporting the fight against terrorist bombing threats. Very selective and sensitive ETD instruments have been developed to detect explosive threats concealed on personnel, in vehicles, in luggage, and in cargo containers, as well as for forensic analysis (e.g. post blast inspection, bomb-maker identification, etc.) in a broad range of homeland security, law enforcement, and military applications. A number of recent studies have highlighted the fact that significant improvements in ETD systems' capabilities will be achieved, not by increasing the selectivity/sensitivity of the sensors, but by improved techniques for particle/vapor sampling, pre-concentration, and transport to the sensors. This review article represents a compilation of studies focused on characterizing the adhesive properties of explosive particles, the methodologies for removing/desorbing these particles from a range of surfaces, and approaches for transporting them to the instrument. The objectives of this review are to summarize fundamental work in explosive particle characterization, to describe experimental work performed in harvesting and transport of these particles, and to highlight those approaches that indicate high potential for improving ETD capabilities.

  3. Effective reaction rates for transport of particles to heterogeneous reactive (or porous) surfaces under shear

    NASA Astrophysics Data System (ADS)

    Shah, Preyas; Shaqfeh, Eric S. G.

    2015-11-01

    Mass transfer to heterogeneous reactive (or porous) surfaces is common in applications like heterogeneous catalysis, and biological porous media transport like drug delivery. This is modeled as advection-diffusion in a shear flow to an inert surface with first order reactive patches. We study transport of point particles using boundary element simulations. We show that the heterogeneous surface can be replaced with a uniform-flux boundary condition related to the Sherwood number (S), aka, the dimensionless flux to the reactive region. In the dilute limit of reactive regions, large-scale interaction between the reactive patches is important. In the dilute limit of inert regions, [S] grows as the reciprocal of the inert area fraction. Based on the method of resistances and numerical results, we provide correlations for [S] for general reactive surfaces and flow conditions. We model finite sized particles as general spheroids, specifically for biological applications. We do Brownian Dynamics simulations to account for hydrodynamic and steric interactions with the flow field and the domain geometry, and compare to the point particle results. We observe that anisotropic particles gave a higher pore transport flux compared to spherical particles at all flow conditions.

  4. Transport and trapping of dust particles in a potential well created by inductively coupled diffused plasmas.

    PubMed

    Choudhary, Mangilal; Mukherjee, S; Bandyopadhyay, P

    2016-05-01

    A versatile linear dusty (complex) plasma device is designed to study the transport and dynamical behavior of dust particles in a large volume. Diffused inductively coupled plasma is generated in the background of argon gas. A novel technique is used to introduce the dust particles in the main plasma by striking a secondary direct current glow discharge. These dust particles are found to get trapped in an electrostatic potential well, which is formed due to the combination of the ambipolar electric field caused by diffusive plasma and the field produced by the charged glass wall of the vacuum chamber. According to the requirements, the volume of the dust cloud can be controlled very precisely by tuning the plasma and discharge parameters. The present device can be used to address the underlying physics behind the transport of dust particles, self-excited dust acoustic waves, and instabilities. The detailed design of this device, plasma production and characterization, trapping and transport of the dust particle, and some of the preliminary experimental results are presented. PMID:27250421

  5. Transport and trapping of dust particles in a potential well created by inductively coupled diffused plasmas

    NASA Astrophysics Data System (ADS)

    Choudhary, Mangilal; Mukherjee, S.; Bandyopadhyay, P.

    2016-05-01

    A versatile linear dusty (complex) plasma device is designed to study the transport and dynamical behavior of dust particles in a large volume. Diffused inductively coupled plasma is generated in the background of argon gas. A novel technique is used to introduce the dust particles in the main plasma by striking a secondary direct current glow discharge. These dust particles are found to get trapped in an electrostatic potential well, which is formed due to the combination of the ambipolar electric field caused by diffusive plasma and the field produced by the charged glass wall of the vacuum chamber. According to the requirements, the volume of the dust cloud can be controlled very precisely by tuning the plasma and discharge parameters. The present device can be used to address the underlying physics behind the transport of dust particles, self-excited dust acoustic waves, and instabilities. The detailed design of this device, plasma production and characterization, trapping and transport of the dust particle, and some of the preliminary experimental results are presented.

  6. Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas (GPS - TTBP) Final Report

    SciTech Connect

    Chame, Jacqueline

    2011-05-27

    The goal of this project is the development of the Gyrokinetic Toroidal Code (GTC) Framework and its applications to problems related to the physics of turbulence and turbulent transport in tokamaks,. The project involves physics studies, code development, noise effect mitigation, supporting computer science efforts, diagnostics and advanced visualizations, verification and validation. Its main scientific themes are mesoscale dynamics and non-locality effects on transport, the physics of secondary structures such as zonal flows, and strongly coherent wave-particle interaction phenomena at magnetic precession resonances. Special emphasis is placed on the implications of these themes for rho-star and current scalings and for the turbulent transport of momentum. GTC-TTBP also explores applications to electron thermal transport, particle transport; ITB formation and cross-cuts such as edge-core coupling, interaction of energetic particles with turbulence and neoclassical tearing mode trigger dynamics. Code development focuses on major initiatives in the development of full-f formulations and the capacity to simulate flux-driven transport. In addition to the full-f -formulation, the project includes the development of numerical collision models and methods for coarse graining in phase space. Verification is pursued by linear stability study comparisons with the FULL and HD7 codes and by benchmarking with the GKV, GYSELA and other gyrokinetic simulation codes. Validation of gyrokinetic models of ion and electron thermal transport is pursed by systematic stressing comparisons with fluctuation and transport data from the DIII-D and NSTX tokamaks. The physics and code development research programs are supported by complementary efforts in computer sciences, high performance computing, and data management.

  7. Particle velocity and sediment transport at the limit of deposition in sewers.

    PubMed

    Ota, J J; Perrusquía, G S

    2013-01-01

    This paper focuses on the sediment particle while it is transported at the limit of deposition in storm sewers, i.e. as bed load at the limit of concentration that leads to sediment deposition. Although many empirical sediment transport equations are known in the literature, there is only limited knowledge concerning particle velocity. Sediment particle and sphere velocity measurements were carried out in two pipe channels and these results led to the development of a semi-theoretical equation for sediment transport at the limit of deposition in sewers. Even in the transport process without deposition, sediment movement is slower than water velocity and depends on the angle of repose of sediment with a diameter d on the roughness k of the pipe channel. Instead of classical dimensionless bed shear stress ψ, a modified dimensionless bed shear stress ψ (d/k)(2/3) was suggested, based on the angle of repose and this parameter was proved to be significant for quantifying the transport capacity. The main purpose of this article is to emphasize the importance of careful observation of experiments. Not only number of tests, but physical understanding are essential for better empirical equations. PMID:23416585

  8. A moving-frame boundary-integral method for particle transport in microchannels of complex shape

    NASA Astrophysics Data System (ADS)

    Zinchenko, Alexander Z.; Ashley, John F.; Davis, Robert H.

    2012-04-01

    A new, three-dimensional algorithm is developed to accurately simulate low-Reynolds number, flow-driven motion of a neutrally buoyant spherical particle in plane-parallel microchannels of complex shape. The channel profile may consist of an arbitrary number of straight line segments with sharp corners in an arbitrary configuration. This geometry provides a suitable model for particle transport in many microfluidic devices with multiple branch bifurcations. The particle may be comparable with the narrowest channel dimensions, but is typically much smaller than the overall channel domain, which creates difficulties with a standard boundary-integral approach. To make simulations feasible, the 3D problem is solved locally in a computational cell that is smaller than the full domain and is dynamically constructed around the particle as it moves through the channel; the outer boundary conditions are provided by the 2D flow that would exist in the channel in the absence of the particle. Difficulties with particle-corner close interactions are alleviated using special iterative techniques, (near-) singularity subtractions and corner-fitted, gap-adaptive discretizations of the cell boundary. The algorithm is applied to simulate "pinched-flow fractionation" and predict how particle interactions with a narrow pinch region and sharp corners result in particle focusing and separation in the outlet according to their size. As another application, the particle motion through a T-bifurcation with sharp corners is simulated, with calculation of the particle flux partition ratio for a broad range of parameters. It is demonstrated how the particle-corner interactions can make the side branch inaccessible to particles, even for relatively strong fluid suction through this branch.

  9. Fluid particles transport and diffusion in a von Karman turbulent flow

    NASA Astrophysics Data System (ADS)

    Bourgoin, Mickael; Crawford, Alice; Mordant, Nicolas; Ouellette, Nicholas; Xu, Haitao; Bodenschatz, Eberhard

    2004-11-01

    Using a new high resolution 3D Lagrangian particles tracking experiment we investigate 2 points statistics in a turbulent von Karman flow generated between 2 coaxial counter-rotating disks. We focus on the study of particles diffusion and on the identification of a Richardson diffusion regime, and the dependence on the initial separation of the particles. We will also discuss the Lagrangian transport and stretching of fluid material lines at large scales. This is of relevant interest for magnetohydrodynamic issues (mainly in the frame of dynamo effect). Indeed, when a magnetic field is applied onto an electrically conducting flow at high magnetic Reynolds number, magnetic streamlines are expected to be transported and stretched similarly to the large scale fluid material lines.

  10. Cross-field transport and pitch-angle anisotropy of solar energetic particles in MHD turbulence

    NASA Astrophysics Data System (ADS)

    Fraschetti, F.

    2016-01-01

    Recent modelling of solar energetic particles (SEPs) propagation through the heliospheric turbulence, also discussed in this workshop, has investigated the role of the pitch-angle scattering and the perpendicular transport in spreading particles in heliolongitude, as shown by multi-spacecraft measurements (STEREO A/B, ACE, SOHO, etc.) at 1 AU in various energy ranges. In some events the first-order pitch-angle anisotropy of the particles distribution is not-negligible. We calculate the average perpendicular displacement due to the gradient/curvature drift in an inhomogeneous turbulence accounting for pitch-angle dependence for two MHD turbulence models: (a) 3-D isotropic, (b) anisotropic as conjectured by Goldreich-Sridhar. We find in both cases that the drift scales as (1 - μ2)2 with the cosine of pitch-angle μ, in contrast with previous models for transport of SEPs. This result can impact the models of propagation of SEPs through the heliosphere.

  11. Plutonium-238 observations as a test of modeled transport and surface deposition of meteoric smoke particles

    NASA Astrophysics Data System (ADS)

    Dhomse, S. S.; Saunders, R. W.; Tian, W.; Chipperfield, M. P.; Plane, J. M. C.

    2013-08-01

    are large uncertainties in the transport and surface deposition of upper atmospheric particles used to construct climate proxies. Here we use a 3-D chemistry-climate model (CCM) to simulate the transport and deposition of plutonium-238 oxide nanoparticles formed after the ablation of a power unit in the upper stratosphere (~11°S) in 1964. The model reproduces both the observed hemispheric asymmetry and time scale of Pu-238 deposition. We then use the CCM to investigate the transport of meteoric smoke particles (MSPs) from the upper mesosphere. The strongest MSP deposition is predicted to occur at middle latitudes, providing a significant source of Fe fertilization to the Southern Ocean. The model also predicts substantially more deposition in Greenland than in Antarctica (by a factor of ~15, in agreement with ice core measurements), showing that climate proxy measurements from a limited number of sites must be interpreted with care.

  12. Particle tracking approach for transport in three-dimensional discrete fracture networks

    DOE PAGESBeta

    Makedonska, Nataliia; Painter, Scott L; Bui, Quan M; Gable, Carl; Karra, Satish

    2015-01-01

    The discrete fracture network (DFN) model is a method to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. We present a new particle tracking capability, which is adapted to control volume (Voronoi polygons) flow solutions on unstructured grids (Delaunay triangulations) on three-dimensional DFNs. The locally mass-conserving finite-volume approach eliminates massmore » balance related problems during particle tracking. The scalar fluxes calculated for each control volume face by the flow solver are used to reconstruct a Darcy velocity at each control volume centroid. The groundwater velocities can then be continuously interpolated to any point in the domain of interest. The control volumes at fracture intersections are split into four pieces and the velocity is reconstructed independently on each piece, which results in multiple groundwater velocities at the intersection, one for each fracture on each side of the intersection line. This technique enables detailed particle transport representation through a complex DFN structure. Verified for small DFNs, the new simulation capability enables numerical experiments on advective transport in large DFNs to be performed. We demonstrate this particle transport approach on a DFN model using parameters similar to those of crystalline rock at a proposed geologic repository for spent nuclear fuel in Forsmark, Sweden.« less

  13. Particle tracking approach for transport in three-dimensional discrete fracture networks

    SciTech Connect

    Makedonska, Nataliia; Painter, Scott L; Bui, Quan M; Gable, Carl; Karra, Satish

    2015-01-01

    The discrete fracture network (DFN) model is a method to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. We present a new particle tracking capability, which is adapted to control volume (Voronoi polygons) flow solutions on unstructured grids (Delaunay triangulations) on three-dimensional DFNs. The locally mass-conserving finite-volume approach eliminates mass balance related problems during particle tracking. The scalar fluxes calculated for each control volume face by the flow solver are used to reconstruct a Darcy velocity at each control volume centroid. The groundwater velocities can then be continuously interpolated to any point in the domain of interest. The control volumes at fracture intersections are split into four pieces and the velocity is reconstructed independently on each piece, which results in multiple groundwater velocities at the intersection, one for each fracture on each side of the intersection line. This technique enables detailed particle transport representation through a complex DFN structure. Verified for small DFNs, the new simulation capability enables numerical experiments on advective transport in large DFNs to be performed. We demonstrate this particle transport approach on a DFN model using parameters similar to those of crystalline rock at a proposed geologic repository for spent nuclear fuel in Forsmark, Sweden.

  14. PARTICLE TRANSPORTATION AND DEPOSITION IN HOT GAS FILTER VESSELS - A COMPUTATIONAL AND EXPERIMENTAL MODELING APPROACH

    SciTech Connect

    Goodarz Ahmadi

    2002-07-01

    In this project, a computational modeling approach for analyzing flow and ash transport and deposition in filter vessels was developed. An Eulerian-Lagrangian formulation for studying hot-gas filtration process was established. The approach uses an Eulerian analysis of gas flows in the filter vessel, and makes use of the Lagrangian trajectory analysis for the particle transport and deposition. Particular attention was given to the Siemens-Westinghouse filter vessel at Power System Development Facility in Wilsonville in Alabama. Details of hot-gas flow in this tangential flow filter vessel are evaluated. The simulation results show that the rapidly rotation flow in the spacing between the shroud and the vessel refractory acts as cyclone that leads to the removal of a large fraction of the larger particles from the gas stream. Several alternate designs for the filter vessel are considered. These include a vessel with a short shroud, a filter vessel with no shroud and a vessel with a deflector plate. The hot-gas flow and particle transport and deposition in various vessels are evaluated. The deposition patterns in various vessels are compared. It is shown that certain filter vessel designs allow for the large particles to remain suspended in the gas stream and to deposit on the filters. The presence of the larger particles in the filter cake leads to lower mechanical strength thus allowing for the back-pulse process to more easily remove the filter cake. A laboratory-scale filter vessel for testing the cold flow condition was designed and fabricated. A laser-based flow visualization technique is used and the gas flow condition in the laboratory-scale vessel was experimental studied. A computer model for the experimental vessel was also developed and the gas flow and particle transport patterns are evaluated.

  15. Sensory ciliogenesis in Caenorhabditis elegans: assignment of IFT components into distinct modules based on transport and phenotypic profiles.

    PubMed

    Ou, Guangshuo; Koga, Makato; Blacque, Oliver E; Murayama, Takashi; Ohshima, Yasumi; Schafer, Jenny C; Li, Chunmei; Yoder, Bradley K; Leroux, Michel R; Scholey, Jonathan M

    2007-05-01

    Sensory cilium biogenesis within Caenorhabditis elegans neurons depends on the kinesin-2-dependent intraflagellar transport (IFT) of ciliary precursors associated with IFT particles to the axoneme tip. Here we analyzed the molecular organization of the IFT machinery by comparing the in vivo transport and phenotypic profiles of multiple proteins involved in IFT and ciliogenesis. Based on their motility in wild-type and bbs (Bardet-Biedl syndrome) mutants, IFT proteins were classified into groups with similar transport profiles that we refer to as "modules." We also analyzed the distribution and transport of fluorescent IFT particles in multiple known ciliary mutants and 49 new ciliary mutants. Most of the latter mutants were snip-SNP mapped and one, namely dyf-14(ks69), was cloned and found to encode a conserved protein essential for ciliogenesis. The products of these ciliogenesis genes could also be assigned to the aforementioned set of modules or to specific aspects of ciliogenesis, based on IFT particle dynamics and ciliary mutant phenotypes. Although binding assays would be required to confirm direct physical interactions, the results are consistent with the hypothesis that the C. elegans IFT machinery has a modular design, consisting of modules IFT-subcomplex A, IFT-subcomplex B, and a BBS protein complex, in addition to motor and cargo modules, with each module contributing to distinct functional aspects of IFT or ciliogenesis. PMID:17314406

  16. Modeling Bimolecular Reactions and Transport in Porous Media Via Particle Tracking

    SciTech Connect

    Dong Ding; David Benson; Amir Paster; Diogo Bolster

    2012-01-01

    We use a particle-tracking method to simulate several one-dimensional bimolecular reactive transport experiments. In this numerical method, the reactants are represented by particles: advection and dispersion dominate the flow, and molecular diffusion dictates, in large part, the reactions. The particle/particle reactions are determined by a combination of two probabilities dictated by the physics of transport and energetics of reaction. The first is that reactant particles occupy the same volume over a short time interval. The second is the conditional probability that two collocated particles favorably transform into a reaction. The first probability is a direct physical representation of the degree of mixing in an advancing displacement front, and as such lacks empirical parameters except for the user-defined number of particles. This number can be determined analytically from concentration autocovariance, if this type of data is available. The simulations compare favorably to two physical experiments. In one, the concentration of product, 1,2-naphthoquinoe-4-aminobenzene (NQAB) from reaction between 1,2-naphthoquinone-4-sulfonic acid (NQS) and aniline (AN), was measured at the outflow of a column filled with glass beads at different times. In the other, the concentration distribution of reactants (CuSO_4 and EDTA^{4-}) and products (CuEDTA^{4-}) were quantified by snapshots of transmitted light through a column packed with cryloite sand. The thermodynamic rate coefficient in the latter experiment was 10^7 times greater than the former experiment, making it essentially instantaneous. When compared to the solution of the advection-dispersion-reaction equation (ADRE) with the well-mixed reaction coefficient, the experiments and the particle-tracking simulations showed on the order of 20% to 40% less overall product, which is attributed to poor mixing. The poor mixing also leads to higher product concentrations on the edges of the mixing zones, which the particle

  17. Particle release transport in Danshuei River estuarine system and adjacent coastal ocean: a modeling assessment.

    PubMed

    Chen, Wei-Bo; Liu, Wen-Cheng; Kimura, Nobuaki; Hsu, Ming-Hsi

    2010-09-01

    A three-dimensional hydrodynamic model was created to study the Danshuei River estuarine system and adjacent coastal ocean in Taiwan. The model was verified using measurements of the time-series water surface elevation, tidal current, and salinity from 1999. We conclude that our model is consistent with these observations. Our particle-tracking model was also used to explore the transport of particles released from the Hsin-Hai Bridge, an area that is heavily polluted. The results suggest that it takes a much longer time for the estuary to be flushed out under low freshwater discharge conditions than with high freshwater discharge. We conclude that the northeast and southwest winds minimally impact particle dispersion in the estuary. The particles fail to settle to the bottom in the absence of density-induced circulation. Our model was also used to simulate the ocean outfall at the Bali. Our experimental results suggest that the tidal current dominates the particle trajectories and influences the transport properties in the absence of a wind stress condition. The particles tend to move northeast or southwest along the coast when northeast or southwest winds prevail. Our data suggest that wind-driven currents and tidal currents play important roles in water movement as linked with ocean outfall in the context of the Danshuei River. PMID:19680754

  18. Modeling transport of energetic particles in corotating interaction regions: A case study

    NASA Astrophysics Data System (ADS)

    Zhao, Lulu; Li, Gang; Ebert, R. W.; Dayeh, M. A.; Desai, M. I.; Mason, G. M.; Wu, Z.; Chen, Y.

    2016-01-01

    We investigate energetic particle transport in corotating interaction regions (CIRs) through a case study. The CIR event we study occurred on 8 February 2008 and was observed by both the Advanced Composition Explorer (ACE) and the twin Solar TErrestrial RElations Observatory (STEREO) B spacecraft. An in situ reverse shock was observed by STEREO B (1.0 AU) but not ACE (0.98 AU). Using STEREO B observations and assuming the CIR structure does not vary significantly in the corotating frame, we estimate the shock location at later times for both the STEREO B and ACE observations. Further assuming the accelerated particle spectral shape at the shock does not vary with shock location, we calculate the particle differential intensities as observed by ACE and STEREO B at two different times by solving the focused transport equation using a Monte Carlo simulation. We assume that particles move along Parker's field and experience no cross-field diffusion. We find that the modulation of sub-MeV/nucleon particles is significant. To obtain reasonable comparisons between the simulations and the observations by both ACE and STEREO B, one has to assume that the CIR shock can accelerate more particles at a larger heliocentric distance than at a smaller heliocentric distance.

  19. Zeta potential of clay-size particles in urban rainfall runoff during hydrologic transport

    NASA Astrophysics Data System (ADS)

    Kim, Jong-Yeop; Sansalone, John J.

    2008-07-01

    SummaryUrban rainfall-runoff transports a wide spectrum of anthropogenic aqueous complexes and particulate matter (PM). Zeta potential (ξ) as an electrostatic parameter provides an index of destabilization for clay-size particles (<2 μm) transported during hydrologic processes including passage of the runoff hydrograph. However, ξ of PM in urban rainfall-runoff has rarely been studied due to the dynamic and complex hydrologic, physical and chemical nature of rainfall-runoff systems. This study examined a series of rainfall-runoff events captured from a paved source area catchment in Baton Rouge, LA to characterize ξ of clay-size particles. The ξ of clay-size particles was also examined as a function of hydrologic transport with coupled water chemistry variables. Study results indicated that ξ varied from approximately -15 to -30 mV across the hydrograph of each event and generally mimicked the runoff intensity during hydrologic transport. Hydrologic transport results indicate while ξ was inversely correlated to the hydrograph flow rate, this inverse correlation was a function of variations in water chemistry parameters (pH and ionic strength); parameters that were driven by hydrologic flow rate. For each event ξ exhibited hysteretic trends as a function of rainfall-runoff ionic strength and pH during the passage of the hydrograph. Results demonstrate that hydrologic transport played an important role driving both water chemistry and ξ trends for clay-size particles; as well as treatment behavior of rainfall-runoff unit operations and processes.

  20. Transport and dispersion of fluorescent tracer particles for the dune-bed condition, Atrisco Feeder Canal near Bernalillo, New Mexico

    USGS Publications Warehouse

    Rathbun, R.E.; Kennedy, Vance C.

    1978-01-01

    A fluorescent tracer technique was used to study the rates of transport and dispersion of sediment particles of various diameters and specific gravities for a dune-bed condition in an alluvial channel, Atrisco Feeder Canal near Bernalillo, N. Mex. The total transport rates of bed material measured by the steady-dilution and spatial-integration procedures were within the range of transport rates computed by the modified Einstein procedure. Lateral dispersion of the tracer particles increased with increase in the size of the tracer particles, whereas longitudinal dispersion decreased. The velocities of the tracer particles decreased with increase in the size of the tracer particles; dependence on particle diameter was large for the small particles, small for the large particles. Tracers were found at larger depths in the bed than would be expected on the basis of the sizes of the dunes in the channel. (Woodard-USGS)

  1. Active capture and transport of virus particles using a biomolecular motor-driven, nanoscale antibody sandwich assay.

    SciTech Connect

    Hess, Henry; Bachand, Marlene; Bachand, George David; Carroll-Portillo, Amanda; Rivera, Susan B.

    2005-07-01

    Virus particles are captured and transported using kinesin-driven, antibody-functionalized microtubules. The functionalization was achieved through covalent crosslinking, which consequently enhanced the microtubule stability. The capture and transport of the virus particles was subsequently demonstrated in gliding motility assays in which antibody-coated microtubules functioned as capture elements, and antibody-coated microspheres served as fluorescent reporters.

  2. Statistics of particle transport in a two-dimensional dusty plasma cluster

    SciTech Connect

    Ratynskaia, S.; Knapek, C.; Rypdal, K.; Khrapak, S.; Morfill, G.

    2005-02-01

    Statistical analysis is performed on long time series of dust particle trajectories in a two-dimensional dusty plasma cluster. Particle transport is found to be superdiffusive on all time scales until the range of particle displacements approaches the size of the cluster. Analysis of probability distribution functions and rescaled range analysis of the position increments show that the signal is non-Gaussian self-similar with Hurst exponent H=0.6, indicating that the superdiffusion is caused by long-range dependencies in the system. Investigation of temporal and spatial characteristics of persistent particle slips demonstrates that they are associated with collective events present on all time scales and responsible for the non-Gaussianity and long-memory effects.

  3. A simple stochastic quadrant model for the transport and deposition of particles in turbulent boundary layers

    NASA Astrophysics Data System (ADS)

    Reeks, Michael; Jin, Chunyu; Potts, Ian

    2015-11-01

    We present a simple stochastic quadrant model for calculating the transport and deposition of heavy particles in a fully developed turbulent boundary layer based on the statistics of wall-normal fluid velocity fluctuations obtained from a fully developed channel flow. Individual particles are tracked through the boundary layer via their interactions with a succession of random eddies found in each of the quadrants of the fluid Reynolds shear stress domain in a homogeneous Markov chain process. Deposition rates for a range of heavy particles predicted by the model compare well with benchmark experimental measurements. In addition deposition rates are compared with those obtained continuous random walk (CRW) models including those based on the Langevin equation for the turbulent fluctuations. In addition, various statistics related to the particle near wall behavior are also presented.

  4. A generalized mass transfer law unifying various particle transport mechanisms in dilute dispersions

    NASA Astrophysics Data System (ADS)

    Guha, Abhijit

    2008-09-01

    A generalized mass transfer law for dilute dispersion of particles (or droplets) of any sizes suspended in a fluid has been described, which can be applied to turbulent or laminar flow. The generalized law reduces to the Fick’s law of diffusion in the limit of very small particles. Thus the study shows how the well-known and much-used Fick’s law of diffusion fits into the broader context of particle transport. The general expression for particle flux comprises a diffusive flux due to Brownian motion and turbulent fluctuation, a diffusive flux due to temperature gradient (thermophoresis plus stressphoresis) and a convective flux that arises primarily due to the interaction of particle inertia and the inhomogeneity of the fluid turbulence field (turbophoresis). Shear-induced lift force, electrical force, gravity, etc. also contribute to the convective flux. The present study includes the effects of surface roughness, and the calculations show that the presence of small surface roughness even in the hydraulically smooth regime significantly enhances deposition especially of small particles. Thermophoresis can have equally strong effects, even with a modest temperature difference between the wall and the bulk fluid. For particles of the intermediate size range, turbophoresis, thermophoresis and roughness are all important contributors to the overall deposition rate. The paper includes a parametric study of the effects of electrostatic forces due to mirror charging. The present work provides a unified framework to determine the combined effect of various particle transport mechanisms on mass transfer rate and the inclusion of other mechanisms not considered in this paper is possible.

  5. Particle Deformation and Concentration Polarization in Electroosmotic Transport of Hydrogels through Pores

    SciTech Connect

    Vlassiouk, Ivan V

    2013-01-01

    In this article, we report detection of deformable, hydrogel particles by the resistive-pulse technique using single pores in a polymer film. The hydrogels pass through the pores by electroosmosis and cause formation of a characteristic shape of resistive pulses indicating the particles underwent dehydration and deformation. These effects were explained via a non-homogeneous pressure distribution along the pore axis modeled by the coupled Poisson-Nernst-Planck and Navier Stokes equations. The local pressure drops are induced by the electroosmotic fluid flow. Our experiments also revealed the importance of concentration polarization in the detection of hydrogels. Due to the negative charges as well as branched, low density structure of the hydrogel particles, concentration of ions in the particles is significantly higher than in the bulk. As a result, when electric field is applied across the membrane, a depletion zone can be created in the vicinity of the particle observed as a transient drop of the current. Our experiments using pores with openings between 200 and 1600 nm indicated the concentration polarization dominated the hydrogels detection for pores wider than 450 nm. The results are of importance for all studies that involve transport of molecules, particles and cells through pores with charged walls. The developed inhomogeneous pressure distribution can potentially influence the shape of the transported species. The concentration polarization changes the interpretation of the resistive pulses; the observed current change does not necessarily reflect only the particle size but also the size of the depletion zone that is formed in the particle vicinity.

  6. Chemical characteristics of Northeast Asian fly ash particles: Implications for their long-range transportation

    NASA Astrophysics Data System (ADS)

    Inoue, Jun; Momose, Azusa; Okudaira, Takamoto; Murakami-Kitase, Akiko; Yamazaki, Hideo; Yoshikawa, Shusaku

    2014-10-01

    The chemical compositions of fly ash particles emitted in Northeast Asia were studied to better understand the long-range transportation of atmospheric pollutants. We examined the compositions of spheroidal carbonaceous particles (SCPs), a type of fly ash from several to ˜20 μm in diameter found in surface sediments in or near the main industrial cities of Japan, China, South Korea, and Taiwan. SCPs from different countries were found to vary; SCPs from Japan and South Korea were characterized by low Ti/Si and high S/Si ratios, whereas SCPs in China exhibited high Ti/Si and low S/Si ratios and particles from Taiwan showed high Ti/Si and S/Si ratios. We also examined the SCPs found in remote islands in the Sea of Japan, at least 100 km from any industrial city. On the basis of their chemical compositions, these SCPs were classified as Japan and Korea, China, and Taiwan types using discriminant analysis. The results indicated that 30-50% of the particles found in these islands were assigned to the China type, suggesting that most of these SCPs were probably transported from Chinese industrial regions to these islands. It implies that even large particulate pollutants of ˜10 μm, such as SCPs, could be transported long distances of ˜1000 km.

  7. Silver (Ag) Transport Mechanisms in TRISO Coated Particles: A Critical Review

    SciTech Connect

    IJ van Rooyen; ML Dunzik-Gougar; PM van Rooyen

    2014-05-01

    Transport of 110mAg in the intact SiC layer of TRISO coated particles has been studied for approximately 30 years without arriving at a satisfactory explanation of the transport mechanism. In this paper the possible mechanisms postulated in previous experimental studies, both in-reactor and out-of reactor research environment studies are critically reviewed and of particular interest are relevance to very high temperature gas reactor operating and accident conditions. Among the factors thought to influence Ag transport are grain boundary stoichiometry, SiC grain size and shape, the presence of free silicon, nano-cracks, thermal decomposition, palladium attack, transmutation products, layer thinning and coated particle shape. Additionally new insight to nature and location of fission products has been gained via recent post irradiation electron microscopy examination of TRISO coated particles from the DOE’s fuel development program. The combined effect of critical review and new analyses indicates a direction for investigating possible the Ag transport mechanism including the confidence level with which these mechanisms may be experimentally verified.

  8. Bacterial Composition and Survival on Sahara Dust Particles Transported to the European Alps

    PubMed Central

    Meola, Marco; Lazzaro, Anna; Zeyer, Josef

    2015-01-01

    Deposition of Sahara dust (SD) particles is a frequent phenomenon in Europe, but little is known about the viability and composition of the bacterial community transported with SD. The goal of this study was to characterize SD-associated bacteria transported to the European Alps, deposited and entrapped in snow. During two distinct events in February and May 2014, SD particles were deposited and promptly covered by falling snow, thus preserving them in distinct ochre layers within the snowpack. In June 2014, we collected samples at different depths from a snow profile at the Jungfraujoch (Swiss Alps; 3621 m a.s.l.). After filtration, we performed various microbiological and physicochemical analyses of the snow and dust particles therein that originated in Algeria. Our results show that bacteria survive and are metabolically active after the transport to the European Alps. Using high throughput sequencing, we observed distinct differences in bacterial community composition and structure in SD-layers as compared to clean snow layers. Sporulating bacteria were not enriched in the SD-layers; however, phyla with low abundance such as Gemmatimonadetes and Deinococcus-Thermus appeared to be specific bio-indicators for SD. Since many members of these phyla are known to be adapted to arid oligotrophic environments and UV radiation, they are well suited to survive the harsh conditions of long-range airborne transport. PMID:26733988

  9. Collection and analysis of colloidal particles transported in the Mississippi River, U.S.A.

    USGS Publications Warehouse

    Rees, T.F.; Ranville, J.F.

    1990-01-01

    Sediment transport has long been recognized as an important mechanism for the transport of contaminants in surface waters. Suspended sediment has traditionally been divided into three size classes: sand-sized (>63 ??m), silt-sized ( 63 ??m), silt-sized (< 63 ??m but settleable) and clay-sized (non-settleable). The first two classes are easily collected and characterized using screens (sand) and settling (silt). The clay-sized particles, more properly called colloids, are more difficult to collect and characterize, and until recently received little attention. From the hydrologic perspective, a colloid is a particle, droplet, or gas bubble with at least one dimension between 0.001 and 1 ??m. Because of their small size, colloids have large specific surface areas and high surface free energies which may facilitate sorption of hydrophobic materials. Understanding what types of colloids are present in a system, how contaminants of interest interact with these colloids, and what parameters control the transport of colloids in natural systems is critical if the relative importance of colloid-mediated transport is to be understood. This paper describes the collection, concentration and characterization of colloidal materials in the Mississippi River. Colloid concentrations, particle-size distributions, mineral composition and electrophoretic mobilities were determined. Techniques used are illustrated with samples collected at St. Louis, Missouri, U.S.A.

  10. Robustness and flexibility in compact quasiaxial stellarators: Global ideal MHD stability and energetic particle transport

    SciTech Connect

    Redi, M.H.; Diallo, A.; Cooper, W.A.; Fu, G.Y.

    2000-01-27

    Concerns about the flexibility and robustness of a compact quasiaxial stellarator design are addressed by studying the effects of varied pressure and rotational transform profiles on expected performance. For thirty, related, fully three-dimensional configurations the global, ideal magnetohydrodynamic stability is evaluated as well as energetic particle transport. It is found that tokamak intuition is relevant to understanding the magnetohydrodynamic stability, with pressure gradient driving terms and shear stabilization controlling both the periodicity preserving, N=0, and the non-periodicity preserving, N=1, unstable kink modes. Global kink modes are generated by steeply peaked pressure profiles near the half radius and edge localized kink modes are found for plasmas with steep pressure profiles at the edge as well as with edge rotational transform above 0.5. Energetic particle transport is not strongly dependent on these changes of pressure and current (or rotational transform) profiles, although a weak inverse dependence on pressure peaking through the corresponding Shafranov shift is found. While good transport and MHD stability are not anticorrelated in these equilibria, stability only results from a delicate balance of the pressure and shear stabilization forces. A range of interesting MHD behaviors is found for this large set of equilibria, exhibiting similar particle transport properties.

  11. Silver (Ag) Transport Mechanisms in TRISO coated particles: A Critical Review

    SciTech Connect

    I J van Rooyen; J H Neethling; J A A Engelbrecht; P M van Rooyen; G Strydom

    2012-10-01

    Transport of 110mAg in the intact SiC layer of TRISO coated particles has been studied for approximately 30 years without arriving at a satisfactory explanation of the transport mechanism. In this paper the possible mechanisms postulated in previous experimental studies, both in-reactor and out-of reactor research environment studies are critically reviewed and of particular interest are relevance to very high temperature gas reactor operating and accident conditions. Among the factors thought to influence Ag transport are grain boundary stoichiometry, SiC grain size and shape, the presence of free silicon, nano-cracks, thermal decomposition, palladium attack, transmutation products, layer thinning and coated particle shape. Additionally new insight to nature and location of fission products has been gained via recent post irradiation electron microscopy examination of TRISO coated particles from the DOE’s fuel development program. The combined effect of critical review and new analyses indicates a direction for investigating possible the Ag transport mechanism including the confidence level with which these mechanisms may be experimentally verified.

  12. The Roles of Transport and Wave-Particle Interactions on Radiation Belt Dynamics

    NASA Technical Reports Server (NTRS)

    Fok, Mei-Ching; Glocer, Alex; Zheng, Qiuhua

    2011-01-01

    Particle fluxes in the radiation belts can vary dramatically during geomagnetic active periods. Transport and wave-particle interactions are believed to be the two main types of mechanisms that control the radiation belt dynamics. Major transport processes include substorm dipolarization and injection, radial diffusion, convection, adiabatic acceleration and deceleration, and magnetopause shadowing. Energetic electrons and ions are also subjected to pitch-angle and energy diffusion when interact with plasma waves in the radiation belts. Important wave modes include whistler mode chorus waves, plasmaspheric hiss, electromagnetic ion cyclotron waves, and magnetosonic waves. We investigate the relative roles of transport and wave associated processes in radiation belt variations. Energetic electron fluxes during several storms are simulated using our Radiation Belt Environment (RBE) model. The model includes important transport and wave processes such as substorm dipolarization in global MHD fields, chorus waves, and plasmaspheric hiss. We discuss the effects of these competing processes at different phases of the storms and validate the results by comparison with satellite and ground-based observations. Keywords: Radiation Belts, Space Weather, Wave-Particle Interaction, Storm and Substorm

  13. Studies of HZE particle interactions and transport for space radiation protection purposes

    NASA Technical Reports Server (NTRS)

    Townsend, Lawrence W.; Wilson, John W.; Schimmerling, Walter; Wong, Mervyn

    1987-01-01

    The main emphasis is on developing general methods for accurately predicting high-energy heavy ion (HZE) particle interactions and transport for use by researchers in mission planning studies, in evaluating astronaut self-shielding factors, and in spacecraft shield design and optimization studies. The two research tasks are: (1) to develop computationally fast and accurate solutions to the Boltzmann (transport) equation; and (2) to develop accurate HZE interaction models, from fundamental physical considerations, for use as inputs into these transport codes. Accurate solutions to the HZE transport problem have been formulated through a combination of analytical and numerical techniques. In addition, theoretical models for the input interaction parameters are under development: stopping powers, nuclear absorption cross sections, and fragmentation parameters.

  14. PHITS-2.76, Particle and Heavy Ion Transport code System

    Energy Science and Technology Software Center (ESTSC)

    2015-08-01

    Version 03 PHITS can deal with the transport of almost all particles (nucleons, nuclei, mesons, photons, and electrons) over wide energy ranges, using several nuclear reaction models and nuclear data libraries. Geometrical configuration of the simulation can be set with GG (General Geometry) or CG (Combinatorial Geometry). Various quantities such as heat deposition, track length and production yields can be deduced from the simulation, using implemented estimator functions called "tally". The code also has amore » function to draw 2D and 3D figures of the calculated results as well as the setup geometries, using a code ANGEL. The physical processes included in PHITS can be divided into two categories, transport process and collision process. In the transport process, PHITS can simulate motion of particles under external fields such as magnetic and gravity. Without the external fields, neutral particles move along a straight trajectory with constant energy up to the next collision point. However, charge particles interact many times with electrons in the material losing energy and changing direction. PHITS treats ionization processes not as collision but as a transport process, using the continuous-slowing-down approximation. The average stopping power is given by the charge density of the material and the momentum of the particle taking into account the fluctuations of the energy loss and the angular deviation. In the collision process, PHITS can simulate the elastic and inelastic interactions as well as decay of particles. The total reaction cross section, or the life time of the particle is an essential quantity in the determination of the mean free path of the transport particle. According to the mean free path, PHITS chooses the next collision point using the Monte Carlo method. To generate the secondary particles of the collision, we need the information of the final states of the collision. For neutron induced reactions in low energy region, PHITS employs

  15. PHITS-2.76, Particle and Heavy Ion Transport code System

    SciTech Connect

    2015-08-01

    Version 03 PHITS can deal with the transport of almost all particles (nucleons, nuclei, mesons, photons, and electrons) over wide energy ranges, using several nuclear reaction models and nuclear data libraries. Geometrical configuration of the simulation can be set with GG (General Geometry) or CG (Combinatorial Geometry). Various quantities such as heat deposition, track length and production yields can be deduced from the simulation, using implemented estimator functions called "tally". The code also has a function to draw 2D and 3D figures of the calculated results as well as the setup geometries, using a code ANGEL. The physical processes included in PHITS can be divided into two categories, transport process and collision process. In the transport process, PHITS can simulate motion of particles under external fields such as magnetic and gravity. Without the external fields, neutral particles move along a straight trajectory with constant energy up to the next collision point. However, charge particles interact many times with electrons in the material losing energy and changing direction. PHITS treats ionization processes not as collision but as a transport process, using the continuous-slowing-down approximation. The average stopping power is given by the charge density of the material and the momentum of the particle taking into account the fluctuations of the energy loss and the angular deviation. In the collision process, PHITS can simulate the elastic and inelastic interactions as well as decay of particles. The total reaction cross section, or the life time of the particle is an essential quantity in the determination of the mean free path of the transport particle. According to the mean free path, PHITS chooses the next collision point using the Monte Carlo method. To generate the secondary particles of the collision, we need the information of the final states of the collision. For neutron induced reactions in low energy region, PHITS employs the cross

  16. Percolation and particle transport in the unsaturated zone of a karst aquifer.

    PubMed

    Pronk, Michiel; Goldscheider, Nico; Zopfi, Jakob; Zwahlen, Francxois

    2009-01-01

    Recharge and contamination of karst aquifers often occur via the unsaturated zone, but the functioning of this zone has not yet been fully understood. Therefore, irrigation and tracer experiments, along with monitoring of rainfall events, were used to examine water percolation and the transport of solutes, particles, and fecal bacteria between the land surface and a water outlet into a shallow cave. Monitored parameters included discharge, electrical conductivity, temperature, organic carbon, turbidity, particle-size distribution (PSD), fecal indicator bacteria, chloride, bromide, and uranine. Percolation following rainfall or irrigation can be subdivided into a lag phase (no response at the outlet), a piston-flow phase (release of epikarst storage water by pressure transfer), and a mixed-flow phase (increasing contribution of freshly infiltrated water), starting between 20 min and a few hours after the start of recharge event. Concerning particle and bacteria transport, results demonstrate that (1) a first turbidity signal occurs during increasing discharge due to remobilization of particles from fractures (pulse-through turbidity); (2) a second turbidity signal is caused by direct particle transfer from the soil (flow-through turbidity), often accompanied by high levels of fecal indicator bacteria, up to 17,000 Escherichia coli/100 mL; and (3) PSD allows differentiation between the two types of turbidity. A relative increase of fine particles (0.9 to 1.5 microm) coincides with microbial contamination. These findings help quantify water storage and percolation in the epikarst and better understand contaminant transport and attenuation. The use of PSD as "early-warning parameter" for microbial contamination in karst water is confirmed. PMID:19462487

  17. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1993-03-01

    Local thermal particle and energy transport studies of balanced-injection L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power have been performed on TFTR. The particle transport of He{sup 2+} and electrons following a small helium gas puff and Fe{sup 24+} induced by laser ablation has been examined and compared to the local energy transport characteristics inferred from power balance analysis. All particle perturbation diffusivities are radially hollow and are similar in magnitude and shape to the effective thermal conductivities found by power balance analysis. All particle diffusivities are 1--2 orders of magnitude larger than neoclassical values, except near the magnetic axis. A reduction in the helium diffusivity D{sub He} in the Supershot as compared to the L-mode is accompanied by a similar reduction in the effective single fluid thermal conductivity {chi}fluid. Also, the helium core convective velocity V{sub He} is found to increase in the Supershot over the L-Mode for r/a < 0.5. A quasilinear model of electrostatic drift waves has been used to calculate ratios between particle and energy fluxes in the Supershot. The measured ratios of the helium and iron particle diffusivities are in good accord with predictions, as are predicted ratios of V{sub He}/D{sub He}. Modelling indicates that the similarity in magnitude and profile shape of D{sub He} and {chi}fluid has generally favorable implications for helium ash content in a future fusion reactor. The core convection found in the Supershot increases the helium concentration on axis but does not reduce the plasma reactivity significantly.

  18. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1993-03-01

    Local thermal particle and energy transport studies of balanced-injection L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power have been performed on TFTR. The particle transport of He[sup 2+] and electrons following a small helium gas puff and Fe[sup 24+] induced by laser ablation has been examined and compared to the local energy transport characteristics inferred from power balance analysis. All particle perturbation diffusivities are radially hollow and are similar in magnitude and shape to the effective thermal conductivities found by power balance analysis. All particle diffusivities are 1--2 orders of magnitude larger than neoclassical values, except near the magnetic axis. A reduction in the helium diffusivity D[sub He] in the Supershot as compared to the L-mode is accompanied by a similar reduction in the effective single fluid thermal conductivity [chi]fluid. Also, the helium core convective velocity V[sub He] is found to increase in the Supershot over the L-Mode for r/a < 0.5. A quasilinear model of electrostatic drift waves has been used to calculate ratios between particle and energy fluxes in the Supershot. The measured ratios of the helium and iron particle diffusivities are in good accord with predictions, as are predicted ratios of V[sub He]/D[sub He]. Modelling indicates that the similarity in magnitude and profile shape of D[sub He] and [chi]fluid has generally favorable implications for helium ash content in a future fusion reactor. The core convection found in the Supershot increases the helium concentration on axis but does not reduce the plasma reactivity significantly.

  19. Advances and future needs in particle production and transport code developments

    SciTech Connect

    Mokhov, N.V.; /Fermilab

    2009-12-01

    The next generation of accelerators and ever expanding needs of existing accelerators demand new developments and additions to Monte-Carlo codes, with an emphasis on enhanced modeling of elementary particle and heavy-ion interactions and transport. Challenges arise from extremely high beam energies and beam power, increasing complexity of accelerators and experimental setups, as well as design, engineering and performance constraints. All these put unprecedented requirements on the accuracy of particle production predictions, the capability and reliability of the codes used in planning new accelerator facilities and experiments, the design of machine, target and collimation systems, detectors and radiation shielding and minimization of their impact on environment. Recent advances in widely-used general-purpose all-particle codes are described for the most critical modules such as particle production event generators, elementary particle and heavy ion transport in an energy range which spans up to 17 decades, nuclide inventory and macroscopic impact on materials, and dealing with complex geometry of accelerator and detector structures. Future requirements for developing physics models and Monte-Carlo codes are discussed.

  20. Transport of Brownian particles in a narrow, slowly varying serpentine channel

    NASA Astrophysics Data System (ADS)

    Wang, Xinli; Drazer, German

    2015-04-01

    We study the transport of Brownian particles under a constant driving force and moving in channels that present a varying centerline but have constant aperture width (serpentine channels). We investigate two types of channels, solid channels, in which the particles are geometrically confined between solid walls and soft channels, in which the particles are confined by the potential energy landscape. We consider the limit of narrow, slowly varying channels, i.e., when the aperture and the variation in the position of the centerline are small compared to the length of a unit cell in the channel (wavelength). We use the method of asymptotic expansions to determine both the average velocity (or mobility) and the effective dispersion coefficient of the particles. We show that both solid and soft-channels have the same effects on the transport properties up to leading order correction. Including the next order correction, we obtain that the mobility in a solid-channel is smaller than that in a soft-channel. However, we discuss an alternative definition of the effective width of a soft channel that leads to equal mobilities up to second order terms. Interestingly, in both cases, the corrections to the mobility of the particles are independent of the Péclet number, and the Einstein-Smoluchowski relation is satisfied.

  1. Discrete particle model for bedload sediment transport in the surf zone

    NASA Astrophysics Data System (ADS)

    Calantoni, Joseph

    2002-04-01

    Predicting the evolution of nearshore bathymetry from the highest uprush of the swash offshore to the location of wave breaking is a difficult problem of significant importance, with economic, legal, engineering, scientific, and military implications for coastal environments. Despite the apparent accessibility of the phenomena of interest, namely, the motion of sand under the forcing of waves and currents, the predictive capability of existing models for nearshore evolution is poor. A detailed study of the forces exerted on individual sand grains is undertaken in an effort to elucidate sediment transport mechanisms in the surf zone. New results indicate that fluid acceleration is a particularly important feature of surf zone transport; likewise, the processes of particle size segregation and the role of particle shape are newly explored. The study methodology employs computer simulations that describe the collective and individual motions of discrete particles immersed in a Newtonian fluid having essentially arbitrary density and viscosity. In this study all particle properties are those of quartz sand, and the fluid properties correspond to saltwater at 20°C. Such discrete-particle models, having a basis in molecular dynamics studies, have a broad range of applications in addition to the sedimentological one of interest here; for example, similar methodologies have been applied to traffic flow, schooling fish, crowd control, and other problems in which the particulate nature of the phenomenon is of critical importance.

  2. Particle size distributions and the sequential fragmentation/transport theory applied to volcanic ash

    NASA Astrophysics Data System (ADS)

    Wohletz, K. H.; Sheridan, M. F.; Brown, W. K.

    1989-11-01

    The assumption that distributions of mass versus size interval for fragmented materials fit the log normal distribution is empirically based and has historical roots in the late 19th century. Other often used distributions (e.g., Rosin-Rammler, Weibull) are also empirical and have the general form for mass per size interval: n(l) = klα exp (-lβ), where n(l) represents the number of particles of diameter l, l is the normalized particle diameter, and k, α, and β are constants. We describe and extend the sequential fragmentation distribution to include transport effects upon observed volcanic ash size distributions. The sequential fragmentation/transport (SFT) distribution is also of the above mathematical form, but it has a physical basis rather than empirical. The SFT model applies to a particle-mass distribution formed by a sequence of fragmentation (comminution) and transport (size sorting) events acting upon an initial mass m': n(x, m) = C ∫∫ n(x', m')p(ξ)dx' dm', where x' denotes spatial location along a linear axis, C is a constant, and integration is performed over distance from an origin to the sample location and mass limits from 0 to m. We show that the probability function that models the production of particles of different size from an initial mass and sorts that distribution, p(ξ), is related to mg, where g (noted as γ for fragmentation processes) is a free parameter that determines the location, breadth, and skewness of the distribution; g(γ) must be greater than -1, and it increases from that value as the distribution matures with greater number of sequential steps in the fragmentation or transport process; γ is expected to be near -1 for "sudden" fragmentation mechanisms such as single-event explosions and transport mechanisms that are functionally dependent upon particle mass. This free parameter will be more positive for evolved fragmentation mechanisms such as ball milling and complex transport processes such as saltation. The SFT

  3. Particle and Energy Transport in the SOL of DIII-D and NSTX

    SciTech Connect

    Boedo, J; Maqueda, R; Rudakov, D; McKee, G; Kugel, H; Maingi, R; Crocker, N; Moyer, R; Soukhanovskii, V; Menard, J; Watkins, J; Zweben, S; D'Ippolito, D; Evans, T; Fenstermacher, M; Groth, M; Hollmann, E; Lasnier, C; Myra, J; Roquemore, L; West, W; Zeng, L

    2006-10-09

    The far scrape-off layer (SOL) radial transport and plasma-wall contact is mediated by intermittent and ELM-driven transport. Experiments to characterize the intermittent transport and ELMs have been performed in both DIII-D and NSTX under similar conditions. Both intermittent transport and ELMs are comprised of filaments of hot, dense plasma (n{sub e} {approx} 1 x 10{sup 13} cm{sup -3}, T{sub e} {approx} 400 eV) originating at the edge, transport both particles and heat into the SOL by convection, increasing wall interaction and causing sputtering and impurity release. Both intermittent filaments and ELMs leave the pedestal region at speeds of {approx}0.5-3 km/s, losing heat and particles by parallel transport as they travel through the SOL. The intermittency shows many similarities in NSTX and DIII-D, featuring similar size (2-5 cm), large convective radial velocity, ''holes'' inside and peaks outside the LCFS which quickly decay and slow down with radius. Whereas in DIII-D the intermittency decays in both intensity and frequency in H-mode, it chiefly decays in frequency in NSTX. In the low collisionality (v* = {pi}R{sub q{sub 95}}/{lambda}C) (v* {approx} 0.1, N{sub G} {approx} 0.3) case, the ELMs impact the walls quite directly and account for {approx}90% of the wall particle flux, decreasing to {approx}30% at (v* {approx} 1.0, N{sub G} > 0.6).

  4. Asymmetric transport of light in linearly arrayed metallic nano-particles

    NASA Astrophysics Data System (ADS)

    Horchani, R.

    2016-02-01

    A strong asymmetric light transport in a linear chain of spherical and equidistantly spaced silver metal nano-particles (MNPs) located near a substrate is reported. The contrast ratio of the proposed structure is above 0.95. We have studied the propagation of light in the array with respect to the metal and the size of the last nano-particle of the chain and the nature of the substrate. It is shown also that the presence of a copper or gold substrate enhance the guiding properties of the array. This structure opens the possibility to design various optical devices such as broadband antennae and optical diodes.

  5. Particle sorting in Filter Porous Media and in Sediment Transport: A Numerical and Experimental Study

    NASA Astrophysics Data System (ADS)

    Glascoe, L. G.; Ezzedine, S. M.; Kanarska, Y.; Lomov, I. N.; Antoun, T.; Smith, J.; Hall, R.; Woodson, S.

    2014-12-01

    Understanding the flow of fines, particulate sorting in porous media and fractured media during sediment transport is significant for industrial, environmental, geotechnical and petroleum technologies to name a few. For example, the safety of dam structures requires the characterization of the granular filter ability to capture fine-soil particles and prevent erosion failure in the event of an interfacial dislocation. Granular filters are one of the most important protective design elements of large embankment dams. In case of cracking and erosion, if the filter is capable of retaining the eroded fine particles, then the crack will seal and the dam safety will be ensured. Here we develop and apply a numerical tool to thoroughly investigate the migration of fines in granular filters at the grain scale. The numerical code solves the incompressible Navier-Stokes equations and uses a Lagrange multiplier technique. The numerical code is validated to experiments conducted at the USACE and ERDC. These laboratory experiments on soil transport and trapping in granular media are performed in constant-head flow chamber filled with the filter media. Numerical solutions are compared to experimentally measured flow rates, pressure changes and base particle distributions in the filter layer and show good qualitative and quantitative agreement. To further the understanding of the soil transport in granular filters, we investigated the sensitivity of the particle clogging mechanism to various parameters such as particle size ratio, the magnitude of hydraulic gradient, particle concentration, and grain-to-grain contact properties. We found that for intermediate particle size ratios, the high flow rates and low friction lead to deeper intrusion (or erosion) depths. We also found that the damage tends to be shallower and less severe with decreasing flow rate, increasing friction and concentration of suspended particles. We have extended these results to more realistic heterogeneous

  6. New Capabilities in Mercury: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Cullen, D E; Greenman, G M; Hagmann, C A; Kramer, K J; McKinley, M S; O'Brien, M J; Taylor, J M

    2007-03-08

    The new physics, algorithmic and computer science capabilities of the Mercury general-purpose Monte Carlo particle transport code are discussed. The new physics and algorithmic features include in-line energy deposition and isotopic depletion, significant enhancements to the tally and source capabilities, diagnostic ray-traced particles, support for multi-region hybrid (mesh and combinatorial geometry) systems, and a probability of initiation method. Computer science enhancements include a second method of dynamically load-balancing parallel calculations, improved methods for visualizing 3-D combinatorial geometries and initial implementation of an in-line visualization capabilities.

  7. Transport of particle-associated elements in two agriculture-dominated boreal river systems.

    PubMed

    Marttila, Hannu; Saarinen, Tuomas; Celebi, Ahmet; Kløve, Bjørn

    2013-09-01

    Transport of particulate pollutants in fluvial systems can contribute greatly to total loads. Understanding transport mechanics under different hydrological conditions is key in successful load estimation. This study analysed trace elements and physico-chemical parameters in time-integrated suspended sediment samples, together with dissolved and total concentrations of pollutants, along two agriculture- and peatland-dominated boreal river systems. The samples were taken in a spatially and temporally comprehensive sampling programme during the ice-free seasons of 2010 and 2011. The hydrochemistry and transport of particle-bound elements in the rivers were strongly linked to intense land use and acid sulphate soils in the catchment area, with arable, pasture and peat areas in particular being main diffuse sources. There were significant seasonal and temporal variations in dissolved and particulate fluxes, but spatial variations were small. Continuous measurements of EC, turbidity and discharge proved to be an accurate indicator of dissolved and particulate fluxes. Overall, the results show that transport of particle-bound elements makes a major contribution to total transport fluxes in agriculture-dominated boreal rivers. PMID:23770550

  8. Stochastic simulation of charged particle transport on the massively parallel processor

    NASA Technical Reports Server (NTRS)

    Earl, James A.

    1988-01-01

    Computations of cosmic-ray transport based upon finite-difference methods are afflicted by instabilities, inaccuracies, and artifacts. To avoid these problems, researchers developed a Monte Carlo formulation which is closely related not only to the finite-difference formulation, but also to the underlying physics of transport phenomena. Implementations of this approach are currently running on the Massively Parallel Processor at Goddard Space Flight Center, whose enormous computing power overcomes the poor statistical accuracy that usually limits the use of stochastic methods. These simulations have progressed to a stage where they provide a useful and realistic picture of solar energetic particle propagation in interplanetary space.

  9. Particle transport simulation for spaceborne, NaI gamma-ray spectrometers

    SciTech Connect

    Dyer, C.S.; Truscott, P.R.; Sims, A.J.; Comber, C.; Hammond, N.D.A.

    1988-12-01

    Radioactivity induced in detectors by protons and secondary neutron limits the sensitivity of spaceborn gamma-ray spectrometers. Three-dimensional Monte Carlo transport codes have been employed to simulate particle transport of cosmic rays and inner-belt protons in various representations of the Gamma-Ray Observatory Spacecraft and the Oriented Scintillatin Spectrometer Experiment. Results are used to accurately quantify the contributions to the radioactive background, assess shielding options and examine the effect of detector and spacecraft orientation in anisotropic trapped proton fluxes.

  10. Exposure to ultrafine particles and PM 2.5 in four Sydney transport modes

    NASA Astrophysics Data System (ADS)

    Knibbs, Luke D.; de Dear, Richard J.

    2010-08-01

    Concentrations of ultrafine (<0.1 μm) particles (UFPs) and PM 2.5 (<2.5 μm) were measured whilst commuting along a similar route by train, bus, ferry and automobile in Sydney, Australia. One trip on each transport mode was undertaken during both morning and evening peak hours throughout a working week, for a total of 40 trips. Analyses comprised one-way ANOVA to compare overall (i.e. all trips combined) geometric mean concentrations of both particle fractions measured across transport modes, and assessment of both the correlation between wind speed and individual trip means of UFPs and PM 2.5, and the correlation between the two particle fractions. Overall geometric mean concentrations of UFPs and PM 2.5 ranged from 2.8 (train) to 8.4 (bus) × 10 4 particles cm -3 and 22.6 (automobile) to 29.6 (bus) μg m -3, respectively, and a statistically significant difference ( p < 0.001) between modes was found for both particle fractions. Individual trip geometric mean concentrations were between 9.7 × 10 3 (train) and 2.2 × 10 5 (bus) particles cm -3 and 9.5 (train) to 78.7 (train) μg m -3. Estimated commuter exposures were variable, and the highest return trip mean PM 2.5 exposure occurred in the ferry mode, whilst the highest UFP exposure occurred during bus trips. The correlation between fractions was generally poor, and in keeping with the duality of particle mass and number emissions in vehicle-dominated urban areas. Wind speed was negatively correlated with, and a generally poor determinant of, UFP and PM 2.5 concentrations, suggesting a more significant role for other factors in determining commuter exposure.

  11. Sources, transport, and mixing of particle-bound PAHs fluxes in the upper Neckar River basin

    NASA Astrophysics Data System (ADS)

    Schwientek, Marc; Rügner, Hermann; Qin, Xintong; Scherer, Ulrike; Grathwohl, Peter

    2016-04-01

    Transport of many urban pollutants in rivers is coupled to transport of suspended particles. The degree of contamination of these suspended particles depends on the mixture of "polluted" urban and "clean" background particles. Recent results have shown that, in several meso-scale catchments studied in southwestern and eastern Germany, the loading of particles with polycyclic aromatic hydrocarbons (PAHs) was stable over time and characteristic for each catchment. The absence of significant long-term trends or pronounced changes of the catchment-specific loadings indicate that either input and output of PAHs into the stream networks are largely at steady state or that storage of PAHs in the sediments within the stream network are sufficient to smooth out larger fluctuations. Moreover, it was shown that the contamination of sediments and suspended particles with PAHs is proportional to the number of inhabitants per suspended sediment flux in a catchment. These processes are being further studied at larger scale in the upper Neckar River basin (2300 km²) in southwestern Germany. This basin, located between the mountain ranges of the Black Forest and the Swabian Alb, comprises sub-catchments that are diverse in terms of urban impact, geology (ranging from gypsum and limetstones to siliceous sandstones) and hydrology (dynamics driven either by summerly convective events or by winterly frontal systems and snow melt). Accordingly, quality and quantity of particles being released in the sub-catchments as potential vectors for hydrophobic pollutants differ; and so do the events that mobilize the particles. These settings enable the investigation of how particle-bound pollutant fluxes generated at the meso-scale are mixed and transported at larger scales when introduced into a higher order river. A prominent research question is whether varying contributions from contrasting sub-catchments lead to changing contamination patterns in the main stem or if the sediment storage in

  12. A New Monitoring Method of Individual Particles During Bed Load Transport in a Gravel Bed River.

    NASA Astrophysics Data System (ADS)

    Tremblay, M.; Marquis, G.; Roy, A.; Lamarre, H.

    2009-05-01

    Many particle tracers (passive or active) have been developed to study gravel movement in rivers. It remains difficult however to document resting and moving periods and to know how particles travel from one sedimentation site to another. We have developed a new tracking method using the Hobo Pendant G acceleration Data Logger, to quantitatively describe the motion of individual particles from the initiation of movement, through the displacement and to the rest, in a natural gravel river. The Hobo measures the acceleration in three dimensions at a chosen frequency. Hobo Pendant G Acceleration data logger were inserted into 11 artificial rocks and seeded in Ruisseau Béard, a small gravel river in the Yamaska drainage basin (Québec). The hydraulics, particle sizes and bed characteristics of this site are well known. Controlled tests have been performed before the field experiment to understand the response of the instrument. The results allow us to develop an algorithm which classifies the signal into periods of rest and motion. The algorithm can also differentiate the type of motion: vibration, rolling and sliding of the particles. The data allow us to describe the time of movement, the path length and the velocity of the particles. The comparison of the movement and rest periods to the hydraulic conditions (discharge, shear stress, stream power) established the movement threshold and response times. Relations with bed roughness and morphology were also established. Finally, the development of a 2-dimension model helps visualizing the angular variation motion and a 3D model allows the reconstitution of the particle trajectories on the bed. This method offers great potential to track individual particles and to study bedload transport in rivers. This first attempt needs to be further improved especially to retire the degree of precision of the movement detection. The method should also be tested with frequencies higher than one minute, with more particles of

  13. Variance-reduced particle simulation of the Boltzmann transport equation in the relaxation-time approximation.

    PubMed

    Radtke, Gregg A; Hadjiconstantinou, Nicolas G

    2009-05-01

    We present an efficient variance-reduced particle simulation technique for solving the linearized Boltzmann transport equation in the relaxation-time approximation used for phonon, electron, and radiative transport, as well as for kinetic gas flows. The variance reduction is achieved by simulating only the deviation from equilibrium. We show that in the limit of small deviation from equilibrium of interest here, the proposed formulation achieves low relative statistical uncertainty that is also independent of the magnitude of the deviation from equilibrium, in stark contrast to standard particle simulation methods. Our results demonstrate that a space-dependent equilibrium distribution improves the variance reduction achieved, especially in the collision-dominated regime where local equilibrium conditions prevail. We also show that by exploiting the physics of relaxation to equilibrium inherent in the relaxation-time approximation, a very simple collision algorithm with a clear physical interpretation can be formulated. PMID:19518597

  14. Crossed fiber optic Bessel beams for curvilinear optofluidic transport of dielectric particles.

    PubMed

    Kim, Jongki; Lee, Sungrae; Jeong, Yoonseob; Kim, Jun-Ki; Jung, Yongmin; Merenda, Fabrice; Salathè, Renè-Paul; Shin, Jeon-Soo; Oh, Kyunghwan

    2013-10-01

    Due to its unique non-diffracting and self-reconstructing nature, Bessel beams have been successfully adopted to trap multiple particles along the beam's axial direction. However, prior bulk-optic based Bessel beams have a fundamental form-factor limitation for in situ, in-vitro, and in-vivo applications. Here we present a novel implementation of Fourier optics along a single strand of hybrid optical fiber in a monolithic manner that can generate pseudo Bessel beam arrays in two-dimensional space. We successfully demonstrate unique optofluidic transport of the trapped dielectric particles along a curvilinear optical route by multiplexing the fiber optic pseudo Bessel beams. The proposed technique can form a new building block to realize reconfigurable optofluidic transportation of particulates that can break the limitations of both prior bulk-optic Bessel beam generation techniques and conventional microfluidic channels. PMID:24104217

  15. Transport of membrane-bound mineral particles in blood vessels during chicken embryonic bone development.

    PubMed

    Kerschnitzki, Michael; Akiva, Anat; Ben Shoham, Adi; Koifman, Naama; Shimoni, Eyal; Rechav, Katya; Arraf, Alaa A; Schultheiss, Thomas M; Talmon, Yeshayahu; Zelzer, Elazar; Weiner, Stephen; Addadi, Lia

    2016-02-01

    During bone formation in embryos, large amounts of calcium and phosphate are taken up and transported to the site where solid mineral is first deposited. The initial mineral forms in vesicles inside osteoblasts and is deposited as a highly disordered calcium phosphate phase. The mineral is then translocated to the extracellular space where it penetrates the collagen matrix and crystallizes. To date little is known about the transport mechanisms of calcium and phosphate in the vascular system, especially when high transport rates are needed and the concentrations of these ions in the blood serum may exceed the solubility product of the mineral phase. Here we used a rapidly growing biological model, the chick embryo, to study the bone mineralization pathway taking advantage of the fact that large amounts of bone mineral constituents are transported. Cryo scanning electron microscopy together with cryo energy dispersive X-ray spectroscopy and focused-ion beam imaging in the serial surface view mode surprisingly reveal the presence of abundant vesicles containing small mineral particles in the lumen of the blood vessels. Morphologically similar vesicles are also found in the cells associated with bone formation. This observation directly implicates the vascular system in solid mineral distribution, as opposed to the transport of ions in solution. Mineral particle transport inside vesicles implies that far larger amounts of the bone mineral constituents can be transported through the vasculature, without the danger of ectopic precipitation. This introduces a new stage into the bone mineral formation pathway, with the first mineral being formed far from the bone itself. PMID:26481471

  16. The influence of particle shape on structure, mechanics, and transport in granular materials

    NASA Astrophysics Data System (ADS)

    Smith, Kyle C.

    The development of materials with tailored transport properties is essential to energy conversion and storage applications. Utilization of heterogeneous composite materials composed of discrete particles (i.e., granular materials) represents a promising approach to sustainable, scalable materials production. The so-called jamming point, which represents the transition between fluid-like and solid-like regimes of granular materials, has been the subject of recent fundamental studies. Prior studies have incorporated highly simplified grain shapes that do not reflect the diversity commonly observed in advanced composite materials (e.g., nanomaterials). In the present work, the coupling of heat and charge transport to the level of order in jammed microstructures composed of faceted 3D grains is explored. The systems investigated include lithium ion battery cathodes composed of LiFePO4 nanoparticles, solid state H2 storage in packed beds composed of metal hydride particles, and the Platonic solids. Empirical and theoretical representations of particle shape are determined with single crystal growth models, statistical geometric models, and experimental measurements. An energy-based structural optimization method for the jamming of such arbitrary polyhedral grains is developed to model the mesoscopic structure of heterogeneous materials. Diffusion through the resulting microstructures is simulated with the finite volume method. In LiFePO4 systems a strong dependence of jamming on particle shapes is observed, in which columnar structures aligned with the [010] direction inhibit diffusion along [010] in anisotropic LiFePO4. Transport limitations are induced by [010] columnar order and lead to catastrophic performance degradation in anisotropic LiFePO4 cathodes. Further, judicious mixing of nanoplatelets with additive nanoparticles can frustrate columnar ordering and thereby enhance the rate capability of LiFePO4 electrodes by nearly an order of magnitude. In contrast

  17. Effect of supersonic molecular-beam injection on edge fluctuation and particle transport in Heliotron J

    SciTech Connect

    Zang, L. Kasajima, K.; Hashimoto, K.; Kenmochi, N.; Ohshima, S.; Mizuuchi, T.; Yamamoto, S.; Sha, M.; Nagasaki, K.; Kado, S.; Okada, H.; Minami, T.; Kobayashi, S.; Shi, N.; Konoshima, S.; Nakamura, Y.; Sano, F.; Nishino, N.; Takeuchi, M.; Mukai, K.; and others

    2014-04-15

    Edge fluctuation in a supersonic molecular-beam injection (SMBI) fueled plasma has been measured using an electrostatic probe array. After SMBI, the plasma stored energy (W{sub p}) temporarily decreased then started to increase. The local plasma fluctuation and fluctuation induced particle transport before and after SMBI have been analyzed. In a short duration (∼4 ms) just after SMBI, the density fluctuation of broad-band low frequency increased, and the probability density function (PDF) changed from a nearly Gaussian to a positively skewed non-Gaussian one. This suggests that intermittent structures were produced due to SMBI. Also the fluctuation induced particle transport was greatly enhanced during this short duration. About 4 ms after SMBI, the low frequency broad-band density fluctuation decreased, and the PDF returned to a nearly Gaussian shape. Also the fluctuation induced particle transport was reduced. Compared with conventional gas puff, W{sub p} degradation window is very short due to the short injection period of SMBI. After this short degradation window, fluctuation induced particle transport was reduced and W{sub p} started the climbing phase. Therefore, the short period of the influence to the edge fluctuation might be an advantage of this novel fueling technique. On the other hand, although their roles are not identified at present, coherent MHD modes are also suppressed as well by the application of SMBI. These MHD modes are thought to be de-exited due to a sudden change of the edge density and/or excitation conditions.

  18. The three-dimensional, discrete ordinates neutral particle transport code TORT: An overview

    SciTech Connect

    Azmy, Y.Y.

    1996-12-31

    The centerpiece of the Discrete Ordinates Oak Ridge System (DOORS), the three-dimensional neutral particle transport code TORT is reviewed. Its most prominent features pertaining to large applications, such as adjustable problem parameters, memory management, and coarse mesh methods, are described. Advanced, state-of-the-art capabilities including acceleration and multiprocessing are summarized here. Future enhancement of existing graphics and visualization tools is briefly presented.

  19. Performing three-dimensional neutral particle transport calculations on tera scale computers

    SciTech Connect

    Woodward, C S; Brown, P N; Chang, B; Dorr, M R; Hanebutte, U R

    1999-01-12

    A scalable, parallel code system to perform neutral particle transport calculations in three dimensions is presented. To utilize the hyper-cluster architecture of emerging tera scale computers, the parallel code successfully combines the MPI message passing and paradigms. The code's capabilities are demonstrated by a shielding calculation containing over 14 billion unknowns. This calculation was accomplished on the IBM SP ''ASCI-Blue-Pacific computer located at Lawrence Livermore National Laboratory (LLNL).

  20. Application of tomographic particle image velocimetry to studies of transport in complex (dusty) plasma

    SciTech Connect

    Williams, Jeremiah D.

    2011-05-15

    Over the past twelve years, two-dimensional and stereoscopic particle image velocimetry (PIV) techniques have been used to obtain detailed measurements of the thermal and transport properties of the microparticle component of dusty plasma systems. This letter reports on an extension of these techniques to obtain a volumetric, three-dimensional velocity vector measurement using tomographic PIV. Initial measurements using the tomographic PIV diagnostic are presented.

  1. Effect of Hydrodynamics on Particle Transport in Saturated Fractures: Experimental and Simulation Results

    NASA Astrophysics Data System (ADS)

    Cianflone, S.; Lakhian, V.; Dickson, S. E.

    2014-12-01

    Approximately one third of Canadians and Americans use groundwater as their source of drinking water. Porous media aquifers typically provide significant filtration of particulate contaminants (e.g., viruses, bacteria, protozoa). Fractured media, however, does not provide the same degree of filtration, and in fact often acts as a pathway for particulates to migrate, typically at much greater velocities than in porous media. Fractured aquifers, therefore, are significantly more vulnerable to particulate contamination than unconsolidated porous media. Thus, understanding in the mechanisms of particle migration and retention in fractures is important for the protection and management of these drinking water sources. The purpose of this work was to investigate the role of hydrodynamics on particle transport in saturated, variable aperture fractures. A 2D fracture was randomly generated with an average aperture of approximately 2mm. The fracture was inscribed into pieces of poly(methyl methacrylate), thus creating a pseudo-2D fracture (the xy fracture domain is invariant in z). Transport experiments using fluorescent microspheres (0.05 um, 0.5 um, and 0.75 um) were performed at 2.6 m/day, 26 m/day and 113 m/day and the resulting breakthrough curves were measured. These breakthrough curves included various shoulders and artifacts that were repeatable and could be used to evaluate the quality of a model. COMSOL Multiphysics, was used to generate an average flow field through the 2D fracture by numerically solving the steady-state Navier-Stokes equation. In order to have a 3D realization of the flow field, a parabolic flow regime was assumed in the z-axis and used to scale the average flow field. Random walk particle tracking was utilized to generate breakthrough curves; however, the Brownian motion and local fluid shear mechanisms needed to be considered in addition to the standard movement of particles via the local flow field in order to appropriately model the

  2. Progress in Solving the Elusive Ag Transport Mechanism in TRISO Coated Particles: What is new?

    SciTech Connect

    Isabella Van Rooyen

    2014-10-01

    The TRISO particle for HTRs has been developed to an advanced state where the coating withstands internal gas pressures and retains fission products during irradiation and under postulated accidents. However, one exception is Ag that has been found to be released from high quality TRISO coated particles when irradiated and can also during high temperature accident heating tests. Although out- of- pile laboratory tests have never hither to been able to demonstrate a diffusion process of Ag in SiC, effective diffusion coefficients have been derived to successfully reproduce measured Ag-110m releases from irradiated HTR fuel elements, compacts and TRISO particles It was found that silver transport through SiC does not proceed via bulk volume diffusion. Presently grain boundary diffusion that may be irradiation enhanced either by neutron bombardment or by the presence of fission products such as Pd, are being investigated. Recent studies of irradiated AGR-1 TRISO fuel using scanning transmission electron microscopy (STEM), transmission kukuchi diffraction (TKD) patterns and high resolution transmission electron microscopy (HRTEM) have been used to further the understanding of Ag transport through TRISO particles. No silver was observed in SiC grains, but Ag was identified at triple-points and grain boundaries of the SiC layer in the TRISO particle. Cadmium was also found in some of the very same triple junctions, but this could be related to silver behavior as Ag-110m decays to Cd-110. Palladium was identified as the main constituent of micron-sized precipitates present at the SiC grain boundaries and in most SiC grain boundaries and the potential role of Pd in the transport of Ag will be discussed.

  3. Transport of rare earth element-tagged soil particles in response to thunderstorm runoff.

    PubMed

    Matisoff, G; Ketterer, M E; Wilson, C G; Layman, R; Whiting, P J

    2001-08-15

    The downslope transport of rare earth element-tagged soil particles remobilized during a spring thunderstorm was studied on both a natural prairie and an agricultural field in southwestern Iowa (U.S.A.). A technique was developed for tagging natural soils with the rare earth elements Eu, Tb, and Ho to approximately 1,000 ppm via coprecipitation with MnO2. Tagged material was replaced in target locations; surficial soil samples were collected following precipitation and runoff; and rare earth element concentrations were determined by inductively coupled plasma mass spectrometry. Diffusion and exponential models were applied to the concentration-distance data to determine particle transport distances. The results indicate that the concentration-distance data are well described by the diffusion model, butthe exponential model does not simulate the rapid drop-off in concentrations near the tagged source. Using the diffusion model, calculated particle transport distances at all hillside locations and at both the cultivated and natural prairie sites were short, ranging from 3 to 73 cm during this single runoff event. This study successfully demonstrates a new tool for studying soil erosion. PMID:11529577

  4. First-principles derivation of reactive transport modeling parameters for particle tracking and PDE approaches

    NASA Astrophysics Data System (ADS)

    Hansen, Scott K.; Scher, Harvey; Berkowitz, Brian

    2014-07-01

    Both Eulerian and Lagrangian reactive transport simulations in natural media require selection of a parameter that controls the “promiscuity” of the reacting particles. In Eulerian models, measurement of this parameter may be difficult because its value will generally differ between natural (diffusion-limited) systems and batch experiments, even though both are modeled by reaction terms of the same form. And in Lagrangian models, there previously has been no a priori way to compute this parameter. In both cases, then, selection is typically done by calibration, or ad hoc. This paper addresses the parameter selection problem for Fickian transport by deriving, from first principles and D (the diffusion constant) the reaction-rate-controlling parameters for particle tracking (PT) codes and for the diffusion-reaction equation (DRE). Using continuous time random walk analysis, exact reaction probabilities are derived for pairs of potentially reactive particles based on D and their probability of reaction provided that they collocate. Simultaneously, a second PT scheme directly employing collocation probabilities is derived. One-to-one correspondence between each of D, the reaction radius specified for a PT scheme, and the DRE decay constant are then developed. These results serve to ground reactive transport simulations in their underlying thermodynamics, and are confirmed by simulations.

  5. Particle size distributions and the sequential fragmentation/transport theory applied to volcanic ash

    SciTech Connect

    Wohletz, K.H. ); Sheridan, M.F. ); Brown, W.K. )

    1989-11-10

    The assumption that distributions of mass versus size interval for fragmented materials fit the log normal distribution is empirically based and has historical roots in the late 19th century. Other often used distributions (e.g., Rosin-Rammler, Weibull) are also empirical and have the general form for mass per size interval: {ital n}({ital l})={ital kl}{sup {alpha}} exp(-{ital l}{beta}), where {ital n}({ital l}) represents the number of particles of diameter {ital l}, {ital l} is the normalized particle diameter, and {ital k}, {alpha}, and {beta} are constants. We describe and extend the sequential fragmentation distribution to include transport effects upon observed volcanic ash size distributions. The sequential fragmentation/transport (SFT) distribution is also of the above mathematical form, but it has a physical basis rather than empirical. The SFT model applies to a particle-mass distribution formed by a sequence of fragmentation (comminution) and transport (size sorting) events acting upon an initial mass {ital m}{prime}: {ital n}({ital x}, {ital m})={ital C} {integral}{integral} {ital n}({ital x}{prime}, {ital m}{prime}){ital p}({xi}) {ital dx}{prime} {ital dm}{prime}, where {ital x}{prime} denotes spatial location along a linear axis, {ital C} is a constant, and integration is performed over distance from an origin to the sample location and mass limits from 0 to {ital m}.

  6. Volatiles mass transport within particles of softened coal. Technical progress report, April 1-October 20, 1986

    SciTech Connect

    Howard, J.; Hsu, J.S.; Peters, W.A.

    1986-10-01

    A mathematical model is developed to describe the intraparticle effects of unsteady volatiles transport, chemical kinetics of metaplast formation and depletion, and transient plastic behavior in softening coal pyrolysis. In the pyrolysis process, coal is converted into metaplast and gases via chemical-bond breaking and physical melting. The viscous, fluid-like metaplast further decomposes to form gases, tar, and coke. The transports of gaseous species to the particle surface and to the bubbles which are originated from the sealed pores in the metaplast phase are related to the plastic behavior of coal. The bubbles may grow due to the influx of gaseous volatiles adn the decomposition of tar evaporated from the metaplast. Through the break-up of bubbles on the particle surface, the tar and the light gases in bubbles are released into the ambient. The main objectives of this model are to quantitatively simulate the coupled effects of transport and kinetics and to predict the independent effects of reaction temperature, pressure, particle size, and heating rate on the volatiles yields and the extent of swelling during pyrolysis.

  7. Specific spacecraft evaluation: Special report. [charged particle transport from a mercury ion thruster to spacecraft surfaces

    NASA Technical Reports Server (NTRS)

    Sellen, J. M., Jr.

    1978-01-01

    Charged and neutral particle transport from an 8 cm mercury ion thruster to the surfaces of the P 80-1 spacecraft and to the Teal Ruby sensor and the ECOM-501 sensor of that spacecraft were investigated. Laboratory measurements and analyses were used to examine line-of-sight and nonline-of sight particle transport modes. The recirculation of Hg(+) ions in the magnetic field of the earth was analyzed for spacecraft velocity and Earth magnetic field vector configurations which are expected to occur in near Earth, circular, high inclination orbits. For these magnetic field and orbit conditions and for expected ion release distribution functions, in both angles and energies, the recirculation/re-interception of ions on spacecraft surfaces was evaluated. The refraction of weakly energetic ions in the electric fields of the thruster plasma plume and in the electric fields between this plasma plume and the material boundaries of the thruster, the thruster sputter shield, and the various spacecraft surfaces were examined. The neutral particle transport modes of interest were identified as sputtered metal atoms from the thruster beam shield. Results, conclusions, and future considerations are presented.

  8. Convective particle transport arising from poloidal inhomogeneity in tokamak H mode

    SciTech Connect

    Kasuya, N.; Itoh, K.

    2005-09-15

    In tokamak high-confinement modes (H modes), a large poloidal flow exists within an edge transport barrier, and the electrostatic potential and density profiles can be steep both in the radial and poloidal directions. The two-dimensional structures of the electrostatic potential, density, and flow velocity near the edge of a tokamak plasma are investigated. The analysis is carried out with the momentum conservation law using the shock ordering. For the case with a strong radial electric field (H-mode case), a particle flux is induced from asymmetry of the poloidal electric field in the transport barrier. This convective transport is found to depend weakly on collisionality, and changes its direction in accordance with the direction of the radial electric field, the toroidal magnetic field, and the plasma current. The divergence of a particle flux is a source of temporal variation of the density, and there are negative divergence regions both in the inward and outward flux cases. Thus this convective particle flux is a new candidate for the cause of the rapid establishment of the density pedestal after the onset of low to high confinement mode (L/H) transition.

  9. PyMercury: Interactive Python for the Mercury Monte Carlo Particle Transport Code

    SciTech Connect

    Iandola, F N; O'Brien, M J; Procassini, R J

    2010-11-29

    Monte Carlo particle transport applications are often written in low-level languages (C/C++) for optimal performance on clusters and supercomputers. However, this development approach often sacrifices straightforward usability and testing in the interest of fast application performance. To improve usability, some high-performance computing applications employ mixed-language programming with high-level and low-level languages. In this study, we consider the benefits of incorporating an interactive Python interface into a Monte Carlo application. With PyMercury, a new Python extension to the Mercury general-purpose Monte Carlo particle transport code, we improve application usability without diminishing performance. In two case studies, we illustrate how PyMercury improves usability and simplifies testing and validation in a Monte Carlo application. In short, PyMercury demonstrates the value of interactive Python for Monte Carlo particle transport applications. In the future, we expect interactive Python to play an increasingly significant role in Monte Carlo usage and testing.

  10. Temperature dependence of antenna excitation transport in native photosystem I particles. [Electronic energy transport (EET)

    SciTech Connect

    Lyle, P.A.; Struve, W.S. )

    1991-05-16

    The temperature dependence of polarized photobleaching dynamics was investigated through 680-nm pump-probe experiments in the Chl a antenna of native photosystem 1 particles (Chl/P700 {approximately} 200) from spinach. The anisotropic decay time is lengthened by an order of magnitude (from {approximately}7 to {approximately}62 ps) when the temperature is reduced from 290 to 38 K; most of this increase occurs between 65 and 38 K. The occurrence of this transition temperature in the tens of kelvin reflects the participation of protein phonons in antenna EET. The isotopic decay kinetics are considerably less temperature sensitive, indicating that the anisotropic and isotropic decays stem from different energy-transfer processes with contrasting temperature dependence. The 38 K photobleaching spectrum at 5 ps exhibits considerably more weighting in the lower energy Chl a spectral forms than the room-temperature spectrum, suggesting that rapid spectral equilibration occurs in the photosystem 1 antenna. In light of the phonon frequency and electron-phonon coupling parameters determined in independent PSI-200 spectral hole-burning experiments, the quantitative temperature dependence int he anisotropic decay times is consistent with a theory for phonon-assisted EET in which the pertinent phonons are independent modes localized about the donor and acceptor chromophores.

  11. High-Speed Transport of Fluid Drops and Solid Particles via Surface Acoustic Waves

    NASA Technical Reports Server (NTRS)

    Bar-Cohen, Yoseph; Bao, Xiaoqi; Sherrit, Stewart; Badescu, Mircea; Lih, Shyh-shiuh

    2012-01-01

    A compact sampling tool mechanism that can operate at various temperatures, and transport and sieve particle sizes of powdered cuttings and soil grains with no moving parts, has been created using traveling surface acoustic waves (SAWs) that are emitted by an inter-digital transducer (IDT). The generated waves are driven at about 10 MHz, and it causes powder to move towards the IDT at high speed with different speeds for different sizes of particles, which enables these particles to be sieved. This design is based on the use of SAWs and their propelling effect on powder particles and fluids along the path of the waves. Generally, SAWs are elastic waves propagating in a shallow layer of about one wavelength beneath the surface of a solid substrate. To generate SAWs, a piezoelectric plate is used that is made of LiNbO3 crystal cut along the x-axis with rotation of 127.8 along the y-axis. On this plate are printed pairs of fingerlike electrodes in the form of a grating that are activated by subjecting the gap between the electrodes to electric field. This configuration of a surface wave transmitter is called IDT. The IDT that was used consists of 20 pairs of fingers with 0.4-mm spacing, a total length of 12.5 mm. The surface wave is produced by the nature of piezoelectric material to contract or expand when subjected to an electric field. Driving the IDT to generate wave at high amplitudes provides an actuation mechanism where the surface particles move elliptically, pulling powder particles on the surface toward the wavesource and pushing liquids in the opposite direction. This behavior allows the innovation to separate large particles and fluids that are mixed. Fluids are removed at speed (7.5 to 15 cm/s), enabling this innovation of acting as a bladeless wiper for raindrops. For the windshield design, the electrodes could be made transparent so that they do not disturb the driver or pilot. Multiple IDTs can be synchronized to transport water or powder over larger

  12. Quantum Phase Coherence in Mesoscopic Transport Devices with Two-Particle Interaction.

    PubMed

    Wang, Zhimei; Guo, Xiaofang; Xue, Haibin; Xue, Naitao; Liang, J-Q

    2015-01-01

    In this paper we demonstrate a new type of quantum phase coherence (QPC), which is generated by the two-body interaction. This conclusion is based on quantum master equation analysis for the full counting statistics of electron transport through two parallel quantum-dots with antiparallel magnetic fluxes in order to eliminate the Aharonov-Bohm interference of either single-particle or non-interacting two-particle wave functions. The interacting two-particle QPC is realized by the flux-dependent oscillation of the zero-frequency cumulants including the shot noise and skewness with a characteristic period. The accurately quantized peaks of cumulant spectrum may have technical applications to probe the two-body Coulomb interaction. PMID:26255858

  13. Quantum Phase Coherence in Mesoscopic Transport Devices with Two-Particle Interaction

    NASA Astrophysics Data System (ADS)

    Wang, Zhimei; Guo, Xiaofang; Xue, Haibin; Xue, Naitao; Liang, J.-Q.

    2015-08-01

    In this paper we demonstrate a new type of quantum phase coherence (QPC), which is generated by the two-body interaction. This conclusion is based on quantum master equation analysis for the full counting statistics of electron transport through two parallel quantum-dots with antiparallel magnetic fluxes in order to eliminate the Aharonov-Bohm interference of either single-particle or non-interacting two-particle wave functions. The interacting two-particle QPC is realized by the flux-dependent oscillation of the zero-frequency cumulants including the shot noise and skewness with a characteristic period. The accurately quantized peaks of cumulant spectrum may have technical applications to probe the two-body Coulomb interaction.

  14. Quantum Phase Coherence in Mesoscopic Transport Devices with Two-Particle Interaction

    PubMed Central

    Wang, Zhimei; Guo, Xiaofang; Xue, Haibin; Xue, Naitao; Liang, J.-Q.

    2015-01-01

    In this paper we demonstrate a new type of quantum phase coherence (QPC), which is generated by the two-body interaction. This conclusion is based on quantum master equation analysis for the full counting statistics of electron transport through two parallel quantum-dots with antiparallel magnetic fluxes in order to eliminate the Aharonov-Bohm interference of either single-particle or non-interacting two-particle wave functions. The interacting two-particle QPC is realized by the flux-dependent oscillation of the zero-frequency cumulants including the shot noise and skewness with a characteristic period. The accurately quantized peaks of cumulant spectrum may have technical applications to probe the two-body Coulomb interaction. PMID:26255858

  15. Fluctuation-induced transport of two coupled particles: Effect of the interparticle interaction

    NASA Astrophysics Data System (ADS)

    Makhnovskii, Yurii A.; Rozenbaum, Viktor M.; Sheu, Sheh-Yi; Yang, Dah-Yen; Trakhtenberg, Leonid I.; Lin, Sheng Hsien

    2014-06-01

    We consider a system of two coupled particles fluctuating between two states, with different interparticle interaction potentials and particle friction coefficients. An external action drives the interstate transitions that induces reciprocating motion along the internal coordinate x (the interparticle distance). The system moves unidirectionally due to rectification of the internal motion by asymmetric friction fluctuations and thus operates as a dimeric motor that converts input energy into net movement. We focus on how the law of interaction between the particles affects the dimer transport and, in particular, the role of thermal noise in the motion inducing mechanism. It is argued that if the interaction potential behaves at large distances as xα, depending on the value of the exponent α, the thermal noise plays a constructive (α > 2), neutral (α = 2), or destructive (α < 2) role. In the case of α = 1, corresponding piecewise linear potential profiles, an exact solution is obtained and discussed in detail.

  16. Radial transport of approximately 1 MeV/nucleon ions during the 22 November 1977 solar particle event

    NASA Technical Reports Server (NTRS)

    Mason, G. M.; Klecker, B.; Hamilton, D. C.; Gloeckler, G.

    1985-01-01

    Time intensity profiles of solar flare energetic particle events carry information on the particle injection processes at the Sun, as well as the transport of particles in interplanetary space. However, in order to help identify the individual processes of injection versus transport it is necessary to use observations taken at more than one radial location. Results of such a study concerning the 22 November 1977 solar particle event, observed with instruments at 1.0 and 1.55 AU are presented. The observations are for particles of energies near 1 MeV/nucleon, considerably less than the approx. 10 to 20 MeV/nucleon energies typical of previous radial transport studies. Thus, in the present work it is possible to examine the validity of transport models to considerably lower energies than in previous work.

  17. Constraints of solar flare particle transport models from anisotropy observations at Voyager 1

    NASA Technical Reports Server (NTRS)

    Hamilton, D. C.; Mason, G. M.; Gloeckler, G.

    1985-01-01

    In general a particle transport model for energetic solar flare particles contains a number of free parameters which are determined by fitting various features of observed particle events. Frequently the parameter values are not uniquely determined. In order to place tighter constraints on the models, the anisotropy of 1 and 25 MeV/nuc protons and helium nuclei were examined during the 22 November 1977 solar particle event using data from the LECP experiment on Voyager 1 at 1.6 AU. These observations were combined with the time intensity profiles at Voyager 1 and at 1 AU from ISEE-1 and IMP-8 to determine the magnitude and radial dependence of the interplanetary diffusion coefficient and the required injection duration at the sun. The first order anisotropy amplitudes for both 1 MeV and 25 MeV protons are observed to decrease from maximum values (approx. 1) during the event onset at Voyager 1 to values consistent with convection in the solar wind at about 3 days into the event decay phase. The intensity and anisotropy profiles at 1.6 AU are consistent with predictions of diffusive transport with a modest mean free path (lambda = approx. 0.1 AU).

  18. Drift-Alfven wave mediated particle transport in an elongated density depression

    SciTech Connect

    Vincena, Stephen; Gekelman, Walter

    2006-06-15

    Cross-field particle transport due to drift-Alfven waves is measured in an elongated density depression within an otherwise uniform, magnetized helium plasma column. The depression is formed by drawing an electron current to a biased copper plate with cross-field dimensions of 28x0.24 ion sound-gyroradii {rho}{sub s}=c{sub s}/{omega}{sub ci}. The process of density depletion and replenishment via particle flux repeats in a quasiperiodic fashion for the duration of the current collection. The mode structure of the wave density fluctuations in the plane perpendicular to the background magnetic field is revealed using a two-probe correlation technique. The particle flux as a function of frequency is measured using a linear array of Langmuir probes and the only significant transport occurs for waves with frequencies between 15%-25% of the ion cyclotron frequency (measured in the laboratory frame) and with perpendicular wavelengths k{sub perpendicular}{rho}{sub s}{approx}0.7. The frequency-integrated particle flux is in rough agreement with observed increases in density in the center of the depletion as a function of time. The experiments are carried out in the Large Plasma Device (LAPD) [Gekelman et al., Rev. Sci. Instrum. 62, 2875 (1991)] at the Basic Plasma Science Facility located at the University of California, Los Angeles.

  19. Practical Implementation of New Particle Tracking Method to the Real Field of Groundwater Flow and Transport

    PubMed Central

    Suk, Heejun

    2012-01-01

    Abstract In articles published in 2009 and 2010, Suk and Yeh reported the development of an accurate and efficient particle tracking algorithm for simulating a path line under complicated unsteady flow conditions, using a range of elements within finite elements in multidimensions. Here two examples, an aquifer storage and recovery (ASR) example and a landfill leachate migration example, are examined to enhance the practical implementation of the proposed particle tracking method, known as Suk's method, to a real field of groundwater flow and transport. Results obtained by Suk's method are compared with those obtained by Pollock's method. Suk's method produces superior tracking accuracy, which suggests that Suk's method can describe more accurately various advection-dominated transport problems in a real field than existing popular particle tracking methods, such as Pollock's method. To illustrate the wide and practical applicability of Suk's method to random-walk particle tracking (RWPT), the original RWPT has been modified to incorporate Suk's method. Performance of the modified RWPT using Suk's method is compared with the original RWPT scheme by examining the concentration distributions obtained by the modified RWPT and the original RWPT under complicated transient flow systems. PMID:22476629

  20. Parallel simulation of particle transport in an advection field applied to volcanic explosive eruptions

    NASA Astrophysics Data System (ADS)

    Künzli, Pierre; Tsunematsu, Kae; Albuquerque, Paul; Falcone, Jean-Luc; Chopard, Bastien; Bonadonna, Costanza

    2016-04-01

    Volcanic ash transport and dispersal models typically describe particle motion via a turbulent velocity field. Particles are advected inside this field from the moment they leave the vent of the volcano until they deposit on the ground. Several techniques exist to simulate particles in an advection field such as finite difference Eulerian, Lagrangian-puff or pure Lagrangian techniques. In this paper, we present a new flexible simulation tool called TETRAS (TEphra TRAnsport Simulator) based on a hybrid Eulerian-Lagrangian model. This scheme offers the advantages of being numerically stable with no numerical diffusion and easily parallelizable. It also allows us to output particle atmospheric concentration or ground mass load at any given time. The model is validated using the advection-diffusion analytical equation. We also obtained a good agreement with field observations of the tephra deposit associated with the 2450 BP Pululagua (Ecuador) and the 1996 Ruapehu (New Zealand) eruptions. As this kind of model can lead to computationally intensive simulations, a parallelization on a distributed memory architecture was developed. A related performance model, taking into account load imbalance, is proposed and its accuracy tested.

  1. Regulation of Human Hepatic Drug Transporter Activity and Expression by Diesel Exhaust Particle Extract

    PubMed Central

    Le Vee, Marc; Jouan, Elodie; Stieger, Bruno; Lecureur, Valérie; Fardel, Olivier

    2015-01-01

    Diesel exhaust particles (DEPs) are common environmental air pollutants primarily affecting the lung. DEPs or chemicals adsorbed on DEPs also exert extra-pulmonary effects, including alteration of hepatic drug detoxifying enzyme expression. The present study was designed to determine whether organic DEP extract (DEPe) may target hepatic drug transporters that contribute in a major way to drug detoxification. Using primary human hepatocytes and transporter-overexpressing cells, DEPe was first shown to strongly inhibit activities of the sinusoidal solute carrier (SLC) uptake transporters organic anion-transporting polypeptides (OATP) 1B1, 1B3 and 2B1 and of the canalicular ATP-binding cassette (ABC) efflux pump multidrug resistance-associated protein 2, with IC50 values ranging from approximately 1 to 20 μg/mL and relevant to environmental exposure situations. By contrast, 25 μg/mL DEPe failed to alter activities of the SLC transporter organic cation transporter (OCT) 1 and of the ABC efflux pumps P-glycoprotein and bile salt export pump (BSEP), whereas it only moderately inhibited those of sodium taurocholate co-transporting polypeptide and of breast cancer resistance protein (BCRP). Treatment by 25 μg/mL DEPe was next demonstrated to induce expression of BCRP at both mRNA and protein level in cultured human hepatic cells, whereas it concomitantly repressed mRNA expression of various transporters, including OATP1B3, OATP2B1, OCT1 and BSEP. Such changes in transporter expression were found to be highly correlated to those caused by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), a reference activator of the aryl hydrocarbon receptor (AhR) pathway. This suggests that DEPe, which is enriched in known ligands of AhR like polycyclic aromatic hydrocarbons, alters drug transporter expression via activation of the AhR cascade. Taken together, these data established human hepatic transporters as targets of organic chemicals containing in DEPs, which may contribute to their

  2. Regulation of human hepatic drug transporter activity and expression by diesel exhaust particle extract.

    PubMed

    Le Vee, Marc; Jouan, Elodie; Stieger, Bruno; Lecureur, Valérie; Fardel, Olivier

    2015-01-01

    Diesel exhaust particles (DEPs) are common environmental air pollutants primarily affecting the lung. DEPs or chemicals adsorbed on DEPs also exert extra-pulmonary effects, including alteration of hepatic drug detoxifying enzyme expression. The present study was designed to determine whether organic DEP extract (DEPe) may target hepatic drug transporters that contribute in a major way to drug detoxification. Using primary human hepatocytes and transporter-overexpressing cells, DEPe was first shown to strongly inhibit activities of the sinusoidal solute carrier (SLC) uptake transporters organic anion-transporting polypeptides (OATP) 1B1, 1B3 and 2B1 and of the canalicular ATP-binding cassette (ABC) efflux pump multidrug resistance-associated protein 2, with IC50 values ranging from approximately 1 to 20 μg/mL and relevant to environmental exposure situations. By contrast, 25 μg/mL DEPe failed to alter activities of the SLC transporter organic cation transporter (OCT) 1 and of the ABC efflux pumps P-glycoprotein and bile salt export pump (BSEP), whereas it only moderately inhibited those of sodium taurocholate co-transporting polypeptide and of breast cancer resistance protein (BCRP). Treatment by 25 μg/mL DEPe was next demonstrated to induce expression of BCRP at both mRNA and protein level in cultured human hepatic cells, whereas it concomitantly repressed mRNA expression of various transporters, including OATP1B3, OATP2B1, OCT1 and BSEP. Such changes in transporter expression were found to be highly correlated to those caused by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), a reference activator of the aryl hydrocarbon receptor (AhR) pathway. This suggests that DEPe, which is enriched in known ligands of AhR like polycyclic aromatic hydrocarbons, alters drug transporter expression via activation of the AhR cascade. Taken together, these data established human hepatic transporters as targets of organic chemicals containing in DEPs, which may contribute to their

  3. Transport of colloidal silica in unsaturated sand: Effect of charging properties of sand and silica particles.

    PubMed

    Fujita, Yosuke; Kobayashi, Motoyoshi

    2016-07-01

    We have studied the transport of colloidal silica in various degrees of a water-saturated Toyoura sand column, because silica particles are widely used as catalyst carriers and abrasive agents, and their toxicity is reported recently. Since water-silica, water-sand, and air-water interfaces have pH-dependent negative charges, the magnitude of surface charge was controlled by changing the solution pH. The results show that, at high pH conditions (pH 7.4), the deposition of colloidal silica to the sand surface is interrupted and the silica concentration at the column outlet immediately reaches the input concentration in saturated conditions. In addition, the relative concentration of silica at the column outlet only slightly decreases to 0.9 with decreasing degrees of water saturation to 38%, because silica particles are trapped in straining regions in the soil pore and air-water interface. On the other hand, at pH 5 conditions (low pH), where sand and colloid have less charge, reduced repulsive forces result in colloidal silica attaching onto the sand in saturated conditions. The deposition amount of silica particles remarkably increases with decreasing degrees of water saturation to 37%, which is explained by more particles being retained in the sand column associated with the air-water interface. In conclusion, at higher pH, the mobility of silica particles is high, and the air-water interface is inactive for the deposition of silica. On the other hand, at low pH, the deposition amount increases with decreasing water saturation, and the particle transport is inhibited. PMID:27045635

  4. a Test Particle Model for Monte Carlo Simulation of Plasma Transport Driven by Quasineutrality

    NASA Astrophysics Data System (ADS)

    Kuhl, Nelson M.

    1995-11-01

    This paper is concerned with the problem of transport in controlled nuclear fusion as it applies to confinement in a tokamak or stellarator. We perform numerical experiments to validate a mathematical model of P. R. Garabedian in which the electric potential is determined by quasineutrality because of singular perturbation of the Poisson equation. The simulations are made using a transport code written by O. Betancourt and M. Taylor, with changes to incorporate our case studies. We adopt a test particle model naturally suggested by the problem of tracking particles in plasma physics. The statistics due to collisions are modeled by a drift kinetic equation whose numerical solution is based on the Monte Carlo method of A. Boozer and G. Kuo -Petravic. The collision operator drives the distribution function in velocity space towards the normal distribution, or Maxwellian. It is shown that details of the collision operator other than its dependence on the collision frequency and temperature matter little for transport, and the role of conservation of momentum is investigated. Exponential decay makes it possible to find the confinement times of both ions and electrons by high performance computing. Three -dimensional perturbations in the electromagnetic field model the anomalous transport of electrons and simulate the turbulent behavior that is presumably triggered by the displacement current. We make a convergence study of the method, derive scaling laws that are in good agreement with predictions from experimental data, and present a comparison with the JET experiment.

  5. BEAMR: An interactive graphic computer program for design of charged particle beam transport systems

    NASA Technical Reports Server (NTRS)

    Leonard, R. F.; Giamati, C. C.

    1973-01-01

    A computer program for a PDP-15 is presented which calculates, to first order, the characteristics of charged-particle beam as it is transported through a sequence of focusing and bending magnets. The maximum dimensions of the beam envelope normal to the transport system axis are continuously plotted on an oscilloscope as a function of distance along the axis. Provision is made to iterate the calculation by changing the types of magnets, their positions, and their field strengths. The program is especially useful for transport system design studies because of the ease and rapidity of altering parameters from panel switches. A typical calculation for a system with eight elements is completed in less than 10 seconds. An IBM 7094 version containing more-detailed printed output but no oscilloscope display is also presented.

  6. Effects of Flow Velocity and Particle Size on Transport of Ultrafine Bubbles in Porous Media

    NASA Astrophysics Data System (ADS)

    Hamamoto, S.; Nihei, N.; Ueda, Y.; Nishimura, T.

    2015-12-01

    Potential applications of ultrafine bubbles (UFBs) have drawn more attention, especially in environmental engineering fields such as soil/groundwater remediation. Understanding a transport mechanism of UFBs in soils is essential to optimize remediation techniques using UFBs. In this study, column transport experiments using glass beads with different size fraction were conducted, where UFBs created by either air or oxygen were injected to the column with different flow conditions. Effects of particle size and flow velocities on transport characteristics of UFBs were investigated based on the column experiments. The results showed that attachments of UFBs were enhanced under lower water velocity condition, exhibiting more than 50% of UFBs injected were attached inside the column. The mobility of O2-UFBs which have lower zeta potential was higher than that of Air-UFBs. A convection-dispersion model including bubble attachment and detachment terms was applied to the obtained breakthrough curves for each experiment, showing good fitness against the measured data.

  7. Biased transport of Brownian particles in a weakly corrugated serpentine channel.

    PubMed

    Wang, Xinli

    2016-01-28

    We investigate the biased transport of Brownian particles in a weakly corrugated channel with constant width but a varying centerline (called serpentine channel). Two different types of channels are considered: a soft-channel is confined by a potential energy landscape; a solid-channel is confined by solid walls. Based on the small amplitude of channel boundaries, the asymptotic method is used to analytically calculate two important macroscopic transport properties--average velocity (or mobility) and effective dispersion coefficient. We find the nonlinear dependence of transport properties on Péclet numbers, which is qualitatively different from the results in a narrow serpentine channel, in which the leading order terms of mobility and the effective dispersion coefficient do not depend on Péclet numbers. In the purely diffusive case where the Péclet number is zero, the Sutherland-Einstein relation is satisfied in both soft and solid channels. PMID:26827196

  8. Nonlinear physics and energetic particle transport features of the beam-plasma instability

    NASA Astrophysics Data System (ADS)

    Carlevaro, Nakia; Falessi, Matteo V.; Montani, Giovanni; Zonca, Fulvio

    2015-10-01

    > In this paper we study transport features of a one-dimensional beam-plasma system in the presence of multiple resonances. As a model description of the general problem of a warm energetic particle beam, we assume cold supra-thermal beams and investigate the self-consistent evolution in the presence of the complete spectrum of nearly degenerate Langmuir modes. A qualitative transport estimation is obtained by computing the Lagrangian Coherent Structures of the system on given temporal scales. This leads to the splitting of the phase space into regions where the local transport processes are relatively faster. The general theoretical framework is applied to the case of the nonlinear dynamics of two cold beams, for which numerical simulation results are illustrated and analysed.

  9. Biased transport of Brownian particles in a weakly corrugated serpentine channel

    NASA Astrophysics Data System (ADS)

    Wang, Xinli

    2016-01-01

    We investigate the biased transport of Brownian particles in a weakly corrugated channel with constant width but a varying centerline (called serpentine channel). Two different types of channels are considered: a soft-channel is confined by a potential energy landscape; a solid-channel is confined by solid walls. Based on the small amplitude of channel boundaries, the asymptotic method is used to analytically calculate two important macroscopic transport properties—average velocity (or mobility) and effective dispersion coefficient. We find the nonlinear dependence of transport properties on Péclet numbers, which is qualitatively different from the results in a narrow serpentine channel, in which the leading order terms of mobility and the effective dispersion coefficient do not depend on Péclet numbers. In the purely diffusive case where the Péclet number is zero, the Sutherland-Einstein relation is satisfied in both soft and solid channels.

  10. Simulation of charged-particle beam transport in a gas using a hybrid particle-fluid plasma model

    NASA Astrophysics Data System (ADS)

    Welch, D. R.; Olson, C. L.; Sanford, T. W. L.

    1994-03-01

    The simulation of charged-particle beam transport in a ˜1 Torr gas requires accurate plasma-electron modeling. A simple resistive model, which assumes local energy deposition and a thermal plasma-electron distribution, is inadequate. A hybrid model has been implemented into the particle-in-cell simulation code, iprop (The iprop Three-Dimensional Beam Propagation Code, AMRC-R-966, available from D. Welch, Mission Research Corporation, 1720 Randolph Road SE, Albuquerque, NM 87106, September 1987), in which plasma electrons are divided into high-energy macroparticle and thermal-fluid components. This model, which includes ``knock-on'' bound-electron collision and runaway sources for high-energy electrons, is then used in the simulation of relativistic electron-beam and ion-beam experiments. Results are found to be in agreement with HERMES III [Performance of the HERMES III Gamma Ray Simulator, in Digest of Technical Papers, 7th IEEE Pulsed Power Conference, Monterey, CA, 11 June 1989 (Institute of Electrical and Electronic Engineers, New York, 1989), pp. 26-31] and GAMBLE II [Phys. Rev. Lett. 70, 2573 (1993)] experimental observables.

  11. Biomass particle models with realistic morphology and resolved microstructure for simulations of intraparticle transport phenomena

    DOE PAGESBeta

    Ciesielski, Peter N.; Crowley, Michael F.; Nimlos, Mark R.; Sanders, Aric W.; Wiggins, Gavin M.; Robichaud, David; Donohoe, Bryon S.; Foust, Thomas D.

    2014-12-09

    Biomass exhibits a complex microstructure of directional pores that impact how heat and mass are transferred within biomass particles during conversion processes. However, models of biomass particles used in simulations of conversion processes typically employ oversimplified geometries such as spheres and cylinders and neglect intraparticle microstructure. In this study, we develop 3D models of biomass particles with size, morphology, and microstructure based on parameters obtained from quantitative image analysis. We obtain measurements of particle size and morphology by analyzing large ensembles of particles that result from typical size reduction methods, and we delineate several representative size classes. Microstructural parameters, includingmore » cell wall thickness and cell lumen dimensions, are measured directly from micrographs of sectioned biomass. A general constructive solid geometry algorithm is presented that produces models of biomass particles based on these measurements. Next, we employ the parameters obtained from image analysis to construct models of three different particle size classes from two different feedstocks representing a hardwood poplar species (Populus tremuloides, quaking aspen) and a softwood pine (Pinus taeda, loblolly pine). Finally, we demonstrate the utility of the models and the effects explicit microstructure by performing finite-element simulations of intraparticle heat and mass transfer, and the results are compared to similar simulations using traditional simplified geometries. In conclusion, we show how the behavior of particle models with more realistic morphology and explicit microstructure departs from that of spherical models in simulations of transport phenomena and that species-dependent differences in microstructure impact simulation results in some cases.« less

  12. Biomass particle models with realistic morphology and resolved microstructure for simulations of intraparticle transport phenomena

    SciTech Connect

    Ciesielski, Peter N.; Crowley, Michael F.; Nimlos, Mark R.; Sanders, Aric W.; Wiggins, Gavin M.; Robichaud, David; Donohoe, Bryon S.; Foust, Thomas D.

    2014-12-09

    Biomass exhibits a complex microstructure of directional pores that impact how heat and mass are transferred within biomass particles during conversion processes. However, models of biomass particles used in simulations of conversion processes typically employ oversimplified geometries such as spheres and cylinders and neglect intraparticle microstructure. In this study, we develop 3D models of biomass particles with size, morphology, and microstructure based on parameters obtained from quantitative image analysis. We obtain measurements of particle size and morphology by analyzing large ensembles of particles that result from typical size reduction methods, and we delineate several representative size classes. Microstructural parameters, including cell wall thickness and cell lumen dimensions, are measured directly from micrographs of sectioned biomass. A general constructive solid geometry algorithm is presented that produces models of biomass particles based on these measurements. Next, we employ the parameters obtained from image analysis to construct models of three different particle size classes from two different feedstocks representing a hardwood poplar species (Populus tremuloides, quaking aspen) and a softwood pine (Pinus taeda, loblolly pine). Finally, we demonstrate the utility of the models and the effects explicit microstructure by performing finite-element simulations of intraparticle heat and mass transfer, and the results are compared to similar simulations using traditional simplified geometries. In conclusion, we show how the behavior of particle models with more realistic morphology and explicit microstructure departs from that of spherical models in simulations of transport phenomena and that species-dependent differences in microstructure impact simulation results in some cases.

  13. Kinetic Particle-In Simulations of Transport in a Tokamak Scrape-Off Layer.

    NASA Astrophysics Data System (ADS)

    Procassini, Richard Joseph

    1990-01-01

    The focus of this thesis is the application of particle-in-cell (PIC) simulation techniques to the study of particle and energy transport in the scrape-off layer (SOL) of a tokamak fusion device. The PIC computer code that is used in this endeavor provides a fully-kinetic, self-consistent description of plasma transport in one spatial dimension (along the open magnetic field lines in the SOL) and two velocity components (v_ {|} and v_{ |}). The diverted-tokamak SOL system was modeled with various levels of physical complexity. The most rudimentary system studied, a collisionless bounded plasma-sheath region, was used to investigate the dependence of the potential structure on the source distribution function used to inject plasma into the SOL. The results from this study were in reasonable agreement with the predictions of previously developed analytic theories. The next level of complexity included the effects of Coulomb collisions. Plasma transport in the SOL was modeled over the wide range of collisionality encountered in current and near-term devices. The electron heat conduction flux in these simulations was limited to 11-21% of the free-streaming thermal flux. Finally, the atomic physics processes of charge exchange and ionization were included in the collisional model. These interactions between the charged-plasma and recycled-neutral particles can significantly affect energy transport through the SOL. This complete version of the kinetic PIC model was used to simulate SOL transport for various values of neutral particle density between the low-and high-recycling limits. The electron and ion kinetic energy fluxes to the divertor plate exhibit a marked decrease as the level of neutral particle recycling increases. The performance of the direct implicit PIC code has been determined with regard to the size of the time step Delta t and grid spacing Delta z. Each of the physics packages incorporated into the PIC code has been benchmarked against either available

  14. Estimating Bacteria Emissions from Inversion of Atmospheric Transport: Sensitivity to Modelled Particle Characteristics

    SciTech Connect

    Burrows, Susannah M.; Rayner, Perter; Butler, T.; Lawrence, M.

    2013-06-04

    Model-simulated transport of atmospheric trace components can be combined with observed concentrations to obtain estimates of ground-based sources using various inversion techniques. These approaches have been applied in the past primarily to obtain source estimates for long-lived trace gases such as CO2. We consider the application of similar techniques to source estimation for atmospheric aerosols, by using as a case study the estimation of bacteria emissions from different ecosystem regions in the global atmospheric chemistry and climate model ECHAM5/MESSy-Atmospheric Chemistry (EMAC). Simulated particle concentrations in the tropopause region and at high latitudes, as well as transport of particles to tundra and land ice regions are shown to be highly sensitive to scavenging in mixed-phase clouds, which is poorly characterized in most global climate models. This may be a critical uncertainty in correctly simulating the transport of aerosol particles to the Arctic. Source estimation via Monte Carlo Markov Chain is applied to a suite of sensitivity simulations and the global mean emissions are estimated. We present an analysis of the partitioning of uncertainties in the global mean emissions that are attributable to particle size, CCN activity, the ice nucleation scavenging ratios for mixed-phase and cold clouds, and measurement error. Uncertainty due to CCN activity or to a 1 um error in particle size is typically between 10% and 40% of the uncertainty due to data uncertainty, as measured by the 5%-ile to 95%-ile range of the Monte Carlo ensemble. Uncertainty attributable to the ice nucleation scavenging ratio in mized-phase clouds is as high as 10% to 20% of the data uncertainty. Taken together, the four model 20 parameters examined contribute about half as much to the uncertainty in the estimated emissions as do the measurements. This was a surprisingly large contribution from model uncertainty in light of the substantial data uncertainty, which ranges from 81

  15. Changes In The Characteristics of Basaltic Particles During Different Transport Processes

    NASA Astrophysics Data System (ADS)

    Craddock, R. A.; Rose, T. R.

    2014-12-01

    The physical and chemical characteristics of the grains in sedimentary deposits can provide valuable clues about transport processes, distance traveled, and provenance. A fundamental physical characteristic is particle shape, which is diagnostic of transport process as well as the distance traveled. For example, it is possible to distinguish the emplacement process of sediments based entirely on the shape of the quartz grains in the deposit [e.g., Folk, 1980]. Such basic sedimentological concepts have been applied to our interpretation of surface materials on the terrestrial planets [e.g. Cabrol et al., 2014]. However, what we know about the nature of sedimentary materials is based primarily on sediments that have weathered from felsic rocks—granite. This is true because felsic materials compose most of the landmass on the Earth. Yet, the surface of Mars is composed predominately of mafic materials—basalt—and sedimentary particles derived from basalt are much different than those derived from granite. Instead of quartz, feldspar, and heavy minerals commonly found in most terrestrial sedimentary deposits, basaltic sediments are typically composed of varying amounts of olivine, pyroxene, plagioclase, and vitric and lithic fragments. Both the persistence of basaltic particles and their specific gravities are different than particles derived from granite. These differences are important because they will affect the characteristics of basaltic sediment as it is transported by wind, water, and ice, and currently we have little to no understanding as to how basaltic sediment will weather as a function of the transport mechanism and distance. We will present preliminary analyses of typical basaltic sediments that have been transported by a variety of geologic processes in Hawaii, including details about surface texture, componentry, and the influence different sedimentary processes may have on remote sensing data. The figure below shows examples of A) sediment

  16. Understanding how hydrodynamics affects particle transport in saturated fractures using modelling and experimental results

    NASA Astrophysics Data System (ADS)

    Cianflone, S.; Lakhian, V.; Dickson, S. E.

    2013-12-01

    Approximately 35% of Canadians and Americans utilize groundwater for drinking water and as such, it is essential to understand the mechanisms which may jeopardize this resource. Porous media aquifers typically provide significant removal of particulate contaminants (eg. viruses, bacteria); however, fractures in fractured rock aquifers and aquitards often provide pathways for particles to move in greater numbers and speed than in porous media. Thus, understanding flow and transport in fractures is important for the preservation and use of groundwater sources. Models based on coupling flow and transport equations can be used in understanding transport in fractures. Both experiments and simulations have shown that there are inconsistencies in current transport, attachment and detachment theory, particularly when particle size is varied. The assumption that hydrodynamic effects do not significantly affect transport of particles is likely untrue. As well, it has been shown that preferential flow paths occur in fractures, but the effects of path specific properties such as fracture geometry have yet to be thoroughly explored. It has been observed that eddies caused by local changes in geometry exist in fractures in the environment and models have demonstrated that such eddies will retard the flow of particles. In this work, two 2D fractures were randomly generated with a mean aperture of approximately 2mm. Finite element software, COMSOL Multiphysics, generated flow fields through the fractures by numerically solving the steady-state Navier-Stokes equation for varied flow rates. Eddies were observed in one of the fractures at both low (~1 m/day) and high (>100 m/day) velocities. A program was written using random walk particle tracking to simulate transport. Theories of attachment, detachment and matrix flow are not included in this model in order to isolate hydrodynamic forces. In combination with the modelling procedure, the two fractures were inscribed into pieces of

  17. Influencing factors on particle-bound contaminant transport in the Elbe estuary

    NASA Astrophysics Data System (ADS)

    Kleisinger, Carmen; Haase, Holger; Schubert, Birgit

    2016-04-01

    Particulate matter, i.e. suspended particulate matter and sediments in rivers and estuaries, often are contaminated with trace metals and selected organic contaminants and are mainly associated with fine-grained fractions. Transport processes and fate of particles in estuaries are influenced by several factors, e.g. freshwater discharge, tide, flow velocity and dredging activities (Kappenberg et al., 2007). Understanding the transport processes in estuaries may help to achieve the objectives of the Water Framework Directive and the Marine Strategy Framework Directive. The German Federal Institute of Hydrology (BfG) operates for more than 20 years five monitoring sites in the Elbe estuary in order to monitor the development of particle-bound contaminant concentrations over time and to understand their transport mechanisms. Results of the monitoring revealed freshwater discharge as an important influencing factor on the transport of contaminated particulate matter (Ackermann et al., 2007). The bidirectional transport of marine and fluvial water and particulate matter in estuaries results in a turbidity zone where large amounts of particulate matter are temporarily retained and thus in a delayed transport of particulate matter towards the sea. The extent and the location of the turbidity zone as well as the ratio of highly contaminated fluvial and less contaminated marine sediments at a given location are mainly influenced by the freshwater discharge (Kowalewska et al., 2011). Furthermore, at high freshwater discharge conditions the highly contaminated particulate matter from fluvial origin are transported downstream the estuary, whereas at low freshwater discharges, upstream transport of less contaminated marine sediments prevails. Hence, residence times of particulate matter in the estuary are difficult to estimate. Furthermore, sedimentation areas with flow reduced conditions, e.g. wadden areas or branches of the Elbe estuary, may act as sinks for particle bound

  18. Controlling the structure and dynamics of magnetoresponsive particle suspensions for enhanced transport phenomena

    NASA Astrophysics Data System (ADS)

    Solis, Kyle J.

    The work contained herein describes the use of various magnetic fields to control the structure and dynamics of magnetic particle suspensions, with the practical aim of enhancing momentum, heat, and mass transport. The magnetic fields are often multiaxial and can consist of up to three orthogonal components that may be either static (dc), time-dependent (ac), or some combination thereof. The magnetic particles are composed of a ferromagnetic material---such as iron, nickel, cobalt, or Permalloy---and can exist in a variety of shapes, including spheres, platelets, and rods. The shape of the particles is particularly important, as this can determine the type of behavior the suspension exhibits and can strongly affect the efficacy of various transport properties. The continuous phase can be almost any fluid so long as it possesses a viscosity that allows the particles to orient and aggregate in response to the applied field. Additionally, if the liquid is polymerizable (e.g., an epoxy system), then composite materials with particular, field-directed particle assemblies can be created. Given the many combinations of various particles, suspending fluids, and magnetic fields, a vast array of behavior is possible: the formation of anisotropic particle structures for directed heat transport for use as advanced thermal interface materials; the stimulation of emergent dynamics in platelet suspensions, which give rise to field-controllable flow lattices; and the creation of vortex fluids that possess a uniform torque density, enabling such strange behaviors as active wetting, a negative viscosity and striking biomimetic dynamics. Because the applied fields used to produce many of these phenomena are uniform and modest in strength, such adaptive fluids open up the possibility of tuning the degree of mixing or heat/mass transfer for specific operating conditions in a number of processes, ranging from the microscale to the industrial scale. Moreover, the very nature of magnetism

  19. Energy Transport Effects in Flaring Atmospheres Heated by Mixed Particle Beams

    NASA Astrophysics Data System (ADS)

    Zharkova, Valentina; Zharkov, Sergei; Macrae, Connor; Druett, Malcolm; Scullion, Eamon

    2016-07-01

    We investigate energy and particle transport in the whole flaring atmosphere from the corona to the photosphere and interior for the flaring events on the 1st July 2012, 6 and 7 September 2011 by using the RHESSI and SDO instruments as well as high-resolution observations from the Swedish 1-metre Solar Telescope (SST3) CRISP4 (CRisp Imaging Spectro-polarimeter). The observations include hard and soft X-ray emission, chromospheric emission in both H-alpha 656.3 nm core and continuum, as well as, in the near infra-red triplet Ca II 854.2 nm core and continuum channels and local helioseismic responses (sunquakes). The observations are compared with the simulations of hard X-ray emission and tested by hydrodynamic simulations of flaring atmospheres of the Sun heated by mixed particle beams. The temperature, density and macro-velocity variations of the ambient atmospheres are calculated for heating by mixed beams and the seismic response of the solar interior to generation of supersonic shocks moving into the solar interior. We investigate the termination depths of these shocks beneath the quiet photosphere levels and compare them with the parameters of seismic responses in the interior, or sunquakes (Zharkova and Zharkov, 2015). We also present an investigation of radiative conditions modelled in a full non-LTE approach for hydrogen during flare onsets with particular focus on Balmer and Paschen emission in the visible, near UV and near IR ranges and compare them with observations. The links between different observational features derived from HXR, optical and seismic emission are interpreted by different particle transport models that will allow independent evaluation of the particle transport scenarios.

  20. Influence of diameter on particle transport in a fractured shale saprolite

    USGS Publications Warehouse

    Cumbie, D.H.; McKay, L.D.

    1999-01-01

    Experiments in an undisturbed, saturated column of weathered and fractured shale saprolite using fluorescent carboxylate-coated latex microspheres as tracers indicate that particle diameter plays a major role in controlling transport. In this study the optimum microsphere diameter for transport was approximately 0.5 ??m. Microspheres larger than the optimum size were present in the effluent at lower relative concentrations, apparently because of greater retention due to gravitational settling and/or physical straining. The smaller than optimum microspheres also experienced greater retention, apparently related to their higher rates of diffusion. Faster diffusion can lead to more frequent collisions with, and attachment to, fracture walls and may also lead to movement of particles into zones of relatively immobile pore water in the fractures or in the fine pore structure of the clay-rich matrix between fractures. Dismantling of the soil column and mapping of the distribution of retained microspheres indicated that there was substantial size-segregation of the microspheres between different fractures or in 'channels' within a fracture. Examination of small core samples showed that the smallest microspheres (0.05-0.1 ??m) were present in the fine pores of the matrix at distances of up to 3-4 mm from the nearest fracture, which supports the hypothesis that small particles can be retained by diffusion into the matrix. Calculations of settling velocity and diffusion rate using simple 1D approaches suggest that these processes could both cause significant retention of the larger and smaller particles, respectively, even for the fast advective transport rates (up to 32 m/day) observed during the experiments. Copyright (C) 1999 Elsevier Science B.V.

  1. Shock Acceleration and Transport of Solar Energetic Particles in the Corona

    NASA Astrophysics Data System (ADS)

    Ng, C. K.; Ko, Y.; Tylka, A. J.; von Rosenvinge, T. T.

    2013-12-01

    In gradual solar energetic particle (SEP) events, the phase-space density of suprathermal seed particles plays an important role in the bootstrap acceleration of SEPs at a coronal-mass-ejection driven shock in the corona. Higher seed proton density causes more rapid resonant amplification of ambient Alfvén waves and hence faster shock acceleration of SEPs. On the other hand, SEP-driven Alfvén wave growth is slowed by higher plasma density and by the thermal damping of left-hand polarized waves at frequencies exceeding a fraction of the proton cyclotron frequency. Damping also influences the background wave distribution. Coronal magnetic field strongly influences the wave-particle interaction since its magnitude scales the resonant wavenumber and its negative parallel gradient focuses the charged particles. The solar-wind velocity and Alfvén speed, relevant to the height of shock formation, are related to the plasma density and magnetic field. Consequently, the spatial dependences of all these environmental parameters influence the coupled evolution of SEP and Alfvén wave distributions. We will present results from our models of SEP acceleration and transport combining the effects of the above physical considerations. The model results will be compared to directly observed and inferred features of SEP events (e.g. streaming-limited intensity, maximum energy, height of first solar particle release) to address the roles and relative importance of the above physical factors.

  2. Effect of single silica gel particle adsorption on the transport processes in a humid air stream

    NASA Astrophysics Data System (ADS)

    Sanyal, Apratim; Basu, Saptarshi; Kumar, Pramod

    2013-11-01

    The effect of adsorption due to a single silica gel particle on a convective field consisting of humid air has been investigated numerically. The adsorption is incorporated as a sink term in the transport equation for species (water vapor) and has been modeled using Linear Driving Force model, while the heat released due to adsorption is taken as source term in the energy equation and proportional to the amount of water vapor adsorbed. The heat released creates a coupling between the species and the temperature field as the adsorption characteristics are directly influenced by particle temperature. The extent of species and temperature boundary layer show the diffusion of the adsorption effects into the free stream. Surface adsorption is found to decrease with Reynolds no. The particle surface temperature increases from forward stagnation point till downstream. This work provides a model for understanding the adsorption kinetics in convective stream for other adsorbate-adsorbent pair. Further more complex scenarios can be modeled such as presence of multiple adsorbent particles, the interaction of species and temperature boundary layers setup due to individual particles and their influence on the overall adsorption characteristics.

  3. Particle Transport across Bi-Fluid Interface Using Acoustic Radiation Force

    NASA Astrophysics Data System (ADS)

    Liu, Yang; Lim, Kian-Meng

    A bi-fluid micro-flow system is proposed for separating particles from its original solvent and re-diluting them into another solvent simultaneously. In this micro-flow system, two different miscible solvents flow parallel to each other through a 2-inlet-2-outlet micro-channel, where an acoustic standing wave is set up. Due to the differences in acoustic properties of these solvents, the pressure node of the acoustic wave is shifted from the middle line of the channel. Under the action of the acoustic radiation force, particles with positive ϕ-factors are extracted from their original solvent and re-suspended into the other solvent, wherein the pressure node resides. Particles suspended in the new solvent are collected at one of the two outlets downstream. Experiments were conducted on a prototype using two aqueous solutions: deionized water and 40% glycerin aqueous solution with polystyrene micro-particles. The results show that under the action of the acoustic standing wave, most of the particles were successfully transported from its original solvent to the other solvent and collected at the outlet.

  4. Transport and deposition of pharmaceutical particles in three commercial spacer-MDI combinations.

    PubMed

    Yazdani, A; Normandie, M; Yousefi, M; Saidi, M S; Ahmadi, G

    2014-11-01

    Respiratory drug delivery has been under the research spotlight for the past few decades, mainly due to the high incidence of pulmonary diseases and the fact that this type of delivery offers the highest efficiency for treatment. Despite its invaluable benefits, there are some major drawbacks to respiratory drug delivery, the most important of which being poor delivery efficiency and relatively high drug deposition in undesirable regions, such as the mouth cavity. One way to improve the efficiency of respiratory drug delivery with metered-dose inhalers is placing a respiratory spacer between the inhaler exit and the mouth. It is argued that high drug deposition in the immediate airways of the respiratory system is strongly affected by relatively high initial momentum of pharmaceutical particles leaving the inhaler. A respiratory spacer, however, can provide an expansion region in which the initial momentum of particles can subside. As a result, particles enter the patient׳s oral cavity more gradually and are more likely to reach the desired regions. In this study, the effectiveness of using three commercial spacers paired with a commercial inhaler is examined through numerical investigation of fluid flow and particle transport phenomena. Particles ranging from 1 to 50 µm in diameter are tracked using a Lagrangian point of view and fluid flow fields are resolved using the LRN k-ω turbulence model. A novel particle injection method is introduced and is demonstrated to be able to adequately capture the effects of particle initial momentum. Lastly, a few design suggestions are made. PMID:25243888

  5. Rapid calculation of hydrodynamic and transport properties in concentrated solutions of colloidal particles and macromolecules

    NASA Astrophysics Data System (ADS)

    Swan, James W.; Wang, Gang

    2016-01-01

    A new method for calculating the resistance tensors of arbitrarily shaped particles and the translational and rotational self-diffusivity in suspensions of such particles is developed. This approach can be harnessed to efficiently and accurately predict the hydrodynamic and transport properties of large macromolecules such as antibodies in solution. Particles are modeled as a rigid composite of spherical beads, and the continuum equations for low Reynolds number fluid mechanics are used to calculate the drag on the composite or its diffusivity in a solution of other composites. The hydrodynamic calculations are driven by a graphics processing unit (GPU) implementation of the particle-mesh-Ewald technique which offers log-linear scaling with respect to the complexity of the composite-bead particles modeled as well as high speed execution leveraging the hyper-parallelization of the GPU. Matrix-free expressions for the hydrodynamic resistance and translational and rotational diffusivity of composite bead particles are developed, which exhibit substantial improvements in computational complexity over existing approaches. The effectiveness of these methods is demonstrated through a series of calculations for composite-bead particles having a spherical geometry, and the results are compared to exact solutions for spheres. Included in the supplementary material is an implementation of the proposed algorithm which functions as a plug-in for the GPU molecular dynamics suite HOOMD-blue (http://codeblue.umich.edu/hoomd-blue) [J. A. Anderson, C. D. Lorenz, and A. Travesset, "General purpose molecular dynamics simulations fully implemented on graphics processing units," J. Comput. Phys. 227(10), 5342-5359 (2008) and Glaser et al., "Strong scaling of general-purpose molecular dynamics simulations on GPUs," Comput. Phys. Commun. 192, 97-107 (2015)].

  6. Children exposure assessment to ultrafine particles and black carbon: The role of transport and cooking activities

    NASA Astrophysics Data System (ADS)

    Buonanno, G.; Stabile, L.; Morawska, L.; Russi, A.

    2013-11-01

    An accurate evaluation of the airborne particle dose-response relationship requires detailed measurements of the actual particle concentration levels that people are exposed to, in every microenvironment in which they reside. The aim of this work was to perform an exposure assessment of children in relation to two different aerosol species: ultrafine particles (UFPs) and black carbon (BC). To this purpose, personal exposure measurements, in terms of UFP and BC concentrations, were performed on 103 children aged 8-11 years (10.1 ± 1.1 years) using hand-held particle counters and aethalometers. Simultaneously, a time-activity diary and a portable GPS were used to determine the children's daily time-activity pattern and estimate their inhaled dose of UFPs and BC. The median concentration to which the study population was exposed was found to be comparable to the high levels typically detected in urban traffic microenvironments, in terms of both particle number (2.2 × 104 part. cm-3) and BC (3.8 μg m-3) concentrations. Daily inhaled doses were also found to be relatively high and were equal to 3.35 × 1011 part. day-1 and 3.92 × 101 μg day-1 for UFPs and BC, respectively. Cooking and using transportation were recognized as the main activities contributing to overall daily exposure, when normalized according to their corresponding time contribution for UFPs and BC, respectively. Therefore, UFPs and BC could represent tracers of children exposure to particulate pollution from indoor cooking activities and transportation microenvironments, respectively.

  7. Results and perspectives of particle transport measurements in gases in microgravity

    NASA Astrophysics Data System (ADS)

    Vedernikov, Andrei; Balapanov, Daniyar; Beresnev, Sergey

    2016-07-01

    Solid or liquid particles floating in a gas belong to dispersed systems, most often referred to as aerosols or dust clouds. They are widely spread in nature, involving both environmental and technological issues. They attract growing attention in microgravity, particularly in complex plasma, simulation of protoplanetary dust clouds, atmospheric aerosol, etc. Brownian random walk, motion of particles in gravity, electrostatic and magnetic fields, are well defined. We present the survey showing that the quantitative description of a vast variety of other types of motion is much less accurate, often known only in a limited region of parameters, sometimes described by the contradictory models, poorly verified experimentally. It is true even for the most extensively investigated transport phenomena - thermophoresis and photophoresis, not to say about diffusiophoresis, gravito-photophoresis, various other types of particle motion driven by physicochemical transformation and accommodation peculiarities on the particle-gas interface, combination of different processes. The number of publications grow very quickly, only those dealing with thermophoresis exceeded 300 in 2015. Hence, there is a strong need in high quality experimental data on particle transport properties with growing interest to expand the scope for non-isometric particles, agglomerates, dense clouds, interrelation with the two-phase flow dynamics. In most cases, the accuracy and sometimes the entire possibility of the measurement is limited by the presence of gravity. Floating particles have the density considerably different from that of the gas. They sediment, often with gliding and tumbling, that perturbs the motion trajectory, local hydrodynamic environment around particles, all together complicating definition of the response. Measurements at very high or very low Knudsen numbers (rarefied gas or too big particles) are of particular difficulty. Experiments assume creating a well-defined force, i

  8. Vesicular Transport of Progeny Parvovirus Particles through ER and Golgi Regulates Maturation and Cytolysis

    PubMed Central

    Bär, Séverine; Rommelaere, Jean; Nüesch, Jürg P. F.

    2013-01-01

    Progeny particles of non-enveloped lytic parvoviruses were previously shown to be actively transported to the cell periphery through vesicles in a gelsolin-dependent manner. This process involves rearrangement and destruction of actin filaments, while microtubules become protected throughout the infection. Here the focus is on the intracellular egress pathway, as well as its impact on the properties and release of progeny virions. By colocalization with cellular marker proteins and specific modulation of the pathways through over-expression of variant effector genes transduced by recombinant adeno-associated virus vectors, we show that progeny PV particles become engulfed into COPII-vesicles in the endoplasmic reticulum (ER) and are transported through the Golgi to the plasma membrane. Besides known factors like sar1, sec24, rab1, the ERM family proteins, radixin and moesin play (an) essential role(s) in the formation/loading and targeting of virus-containing COPII-vesicles. These proteins also contribute to the transport through ER and Golgi of the well described analogue of cellular proteins, the secreted Gaussia luciferase in absence of virus infection. It is therefore likely that radixin and moesin also serve for a more general function in cellular exocytosis. Finally, parvovirus egress via ER and Golgi appears to be necessary for virions to gain full infectivity through post-assembly modifications (e.g. phosphorylation). While not being absolutely required for cytolysis and progeny virus release, vesicular transport of parvoviruses through ER and Golgi significantly accelerates these processes pointing to a regulatory role of this transport pathway. PMID:24068925

  9. Modeling parameterized geometry in GPU-based Monte Carlo particle transport simulation for radiotherapy.

    PubMed

    Chi, Yujie; Tian, Zhen; Jia, Xun

    2016-08-01

    Monte Carlo (MC) particle transport simulation on a graphics-processing unit (GPU) platform has been extensively studied recently due to the efficiency advantage achieved via massive parallelization. Almost all of the existing GPU-based MC packages were developed for voxelized geometry. This limited application scope of these packages. The purpose of this paper is to develop a module to model parametric geometry and integrate it in GPU-based MC simulations. In our module, each continuous region was defined by its bounding surfaces that were parameterized by quadratic functions. Particle navigation functions in this geometry were developed. The module was incorporated to two previously developed GPU-based MC packages and was tested in two example problems: (1) low energy photon transport simulation in a brachytherapy case with a shielded cylinder applicator and (2) MeV coupled photon/electron transport simulation in a phantom containing several inserts of different shapes. In both cases, the calculated dose distributions agreed well with those calculated in the corresponding voxelized geometry. The averaged dose differences were 1.03% and 0.29%, respectively. We also used the developed package to perform simulations of a Varian VS 2000 brachytherapy source and generated a phase-space file. The computation time under the parameterized geometry depended on the memory location storing the geometry data. When the data was stored in GPU's shared memory, the highest computational speed was achieved. Incorporation of parameterized geometry yielded a computation time that was ~3 times of that in the corresponding voxelized geometry. We also developed a strategy to use an auxiliary index array to reduce frequency of geometry calculations and hence improve efficiency. With this strategy, the computational time ranged in 1.75-2.03 times of the voxelized geometry for coupled photon/electron transport depending on the voxel dimension of the auxiliary index array, and in 0

  10. Modeling parameterized geometry in GPU-based Monte Carlo particle transport simulation for radiotherapy

    NASA Astrophysics Data System (ADS)

    Chi, Yujie; Tian, Zhen; Jia, Xun

    2016-08-01

    Monte Carlo (MC) particle transport simulation on a graphics-processing unit (GPU) platform has been extensively studied recently due to the efficiency advantage achieved via massive parallelization. Almost all of the existing GPU-based MC packages were developed for voxelized geometry. This limited application scope of these packages. The purpose of this paper is to develop a module to model parametric geometry and integrate it in GPU-based MC simulations. In our module, each continuous region was defined by its bounding surfaces that were parameterized by quadratic functions. Particle navigation functions in this geometry were developed. The module was incorporated to two previously developed GPU-based MC packages and was tested in two example problems: (1) low energy photon transport simulation in a brachytherapy case with a shielded cylinder applicator and (2) MeV coupled photon/electron transport simulation in a phantom containing several inserts of different shapes. In both cases, the calculated dose distributions agreed well with those calculated in the corresponding voxelized geometry. The averaged dose differences were 1.03% and 0.29%, respectively. We also used the developed package to perform simulations of a Varian VS 2000 brachytherapy source and generated a phase-space file. The computation time under the parameterized geometry depended on the memory location storing the geometry data. When the data was stored in GPU’s shared memory, the highest computational speed was achieved. Incorporation of parameterized geometry yielded a computation time that was ~3 times of that in the corresponding voxelized geometry. We also developed a strategy to use an auxiliary index array to reduce frequency of geometry calculations and hence improve efficiency. With this strategy, the computational time ranged in 1.75–2.03 times of the voxelized geometry for coupled photon/electron transport depending on the voxel dimension of the auxiliary index array, and in 0

  11. A model for the atmospheric transport of sea-salt particles in coastal areas

    NASA Astrophysics Data System (ADS)

    Demoisson, A.; Tedeschi, G.; Piazzola, J.

    2013-10-01

    A model for the aerosol transport in the lower atmosphere is of great interest for studies on air and water quality. One of the difficulties of such a model is to provide the accurate source terms. In particular, for maritime environment, the production of particles generated at the air-sea interface by breaking waves largely varies in time and space (Piazzola et al., 2009). More particularly, near the coastal zone, the sea-spray aerosol fluxes depend on the development of the wave field. The present paper proposes some improvement of the model MACMod, published by Tedeschi and Piazzola (2011), which is dedicated to the transport of aerosol particles in the marine atmospheric boundary layer (MABL). Taking benefit of the experimental campaign MIRAMER conducted in the French Mediterranean in 2008, a new sea-spray source function has been introduced in the latter version of the model MACMod. This consists in a revisited version of the whitecap dependant formulation established by Monahan et al. (1986). The simulations were then validated using aerosol size distributions recorded on board the ship “Atalante” for different wind speeds. Error calculations show a good performance of the model since it predicts the aerosol concentration to within a maximum factor of 3 for particle radii between 0.5 to 5 μm.

  12. A coarse-grained transport model for neutral particles in turbulent plasmas

    SciTech Connect

    Mekkaoui, A.; Reiter, D.; Boerner, P.; Marandet, Y.; Genesio, P.; Rosato, J.; Capes, H.; Koubiti, M.; Godbert-Mouret, L.; Stamm, R.

    2012-12-15

    The transport of neutral particles in turbulent plasmas is addressed from the prospect of developing coarse-grained transport models which can be implemented in code suites like B2-EIRENE, currently used for designing the ITER divertor. The statistical properties of turbulent fluctuations are described by a multivariate Gamma distribution able to retain space and time correlations through a proper choice of covariance function. We show that in the scattering free case, relevant for molecules and impurity atoms, the average neutral particle density obeys a Boltzmann equation with an ionization rate renormalized by fluctuations. This result lends itself to a straightforward implementation in the EIRENE Monte Carlo solver for neutral particles. Special emphasis is put on the inclusion of time correlations, and in particular on the ballistic motion of coherent turbulent structures. The role of these time dependent effects is discussed for D{sub 2} molecules and beryllium atoms. The sensitivity of our results to the assumptions on the statistical properties of fluctuations is investigated.

  13. Investigation of nonthermal particle effects on ionization dynamics in high current density ion beam transport experiments

    NASA Astrophysics Data System (ADS)

    Chung, H. K.; MacFarlane, J. J.; Wang, P.; Moses, G. A.; Bailey, J. E.; Olson, C. L.; Welch, D. R.

    1997-01-01

    Light ion inertial fusion experiments require the presence of a moderate density background gas in the transport region to provide charge and current neutralization for a high current density ion beam. In this article, we investigate the effects of nonthermal particles such as beam ions or non-Maxwellian electron distributions on the ionization dynamics of the background gas. In particular, we focus on the case of Li beams being transported in an argon gas. Nonthermal particles as well as thermal electrons are included in time-dependent collisional-radiative calculations to determine time-dependent atomic level populations and charge state distributions in a beam-produced plasma. We also briefly discuss the effects of beam ions and energetic electrons on the visible and vacuum ultraviolet (VUV) spectral regions. It is found that the mean charge state of the gas, and hence the electron density, is significantly increased by collisions with energetic particles. This higher ionization significantly impacts the VUV spectral region, where numerous resonance lines occur. On the other hand, the visible spectrum tends to be less affected because the closely spaced excited states are populated by lower energy thermal electrons.

  14. Impact of the background toroidal rotation on particle and heat turbulent transport in tokamak plasmas

    SciTech Connect

    Camenen, Y.; Peeters, A. G.; Casson, F. J.; Hornsby, W. A.; Snodin, A. P.; Angioni, C.; Strintzi, D.

    2009-01-15

    Recent developments in the gyrokinetic theory have shown that, in a toroidal device, the Coriolis drift associated with the background plasma rotation significantly affects the small scale instabilities [A. G. Peeters et al., Phys. Rev. Lett. 98, 265003 (2007)]. The later study, which focuses on the effect of the Coriolis drift on toroidal momentum transport is extended in the present paper to heat and particle transport. It is shown numerically using the gyrokinetic flux-tube code GKW[A. G. Peeters and D. Strintzi, Phys. Plasmas 11, 3748 (2004)], and supported analytically, that the Coriolis drift and the parallel dynamics play a similar role in the coupling of density, temperature, and velocity perturbations. The effect on particle and heat fluxes increases with the toroidal rotation (directly) and with the toroidal rotation gradient (through the parallel mode structure), depends on the direction of propagation of the perturbation, increases with the impurity charge number and with the impurity mass to charge number ratio. The case of very high toroidal rotation, relevant to spherical tokamaks, is investigated by including the effect of the centrifugal force in a fluid model. The main effect of the centrifugal force is to decrease the local density gradient at the low field side midplane and to add an extra contribution to the fluxes. The conditions for which the inertial terms significantly affect the heat and particle fluxes are evidenced.

  15. Modeling of advection-diffusion-reaction processes using transport dissipative particle dynamics

    NASA Astrophysics Data System (ADS)

    Li, Zhen; Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-11-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. In particular, the transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of Lagrangian particles. To validate the proposed tDPD model and the boundary conditions, three benchmark simulations of one-dimensional diffusion with different boundary conditions are performed, and the results show excellent agreement with the theoretical solutions. Also, two-dimensional simulations of ADR systems are performed and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, an application of tDPD to the spatio-temporal dynamics of blood coagulation involving twenty-five reacting species is performed to demonstrate the promising biological applications of the tDPD model. Supported by the DOE Center on Mathematics for Mesoscopic Modeling of Materials (CM4) and an INCITE grant.

  16. Smoothed Particle Hydrodynamics Stochastic Model for Flow and Transport in Porous Media

    SciTech Connect

    Tartakovsky, Alexandre M.; Tartakovsky, Daniel M.; Meakin, Paul

    2008-11-03

    A meso-scale stochastic Lagrangian particle model was developed and used to simulate conservative and reactive transport in porous media. In the stochastic model, the fluid flow in a porous continuum is governed by a combination of a Langevin equation and continuity equation. Pore-scale velocity fluctuations, the source of hydrodynamic dispersion, are represented by the white noise. A smoothed particle hydrodynamics method was used to solve the governing equations. Changes in the properties of the fluid particles (e.g., the solute concentration) are governed by the advection-diffusion equation. The separate treatment of advective and diffusive mixing in the stochastic transport model is more realistic than the classical advection-dispersion theory, which uses a single effective diffusion coefficient (the dispersion coefficient) to describe both types of mixing leading to over-prediction of mixing induced effective reaction rates. The stochastic model predicts much lower reaction product concentrations in mixing induced reactions. In addition, the dispersion theory predicts more stable fronts (with a higher effective fractal dimension) than the stochastic model during the growth of Rayleigh-Taylor instabilities.

  17. 3-D Particl-in-Cell Simulations of Transport Driven Currents

    NASA Astrophysics Data System (ADS)

    Tsung, F. S.; Dawson, J. M.

    1997-11-01

    In the advanced tokamak regime, transport phenomena can account for a signficant fraction of the toroidal current, possibly over that driven directly by the ohmic heating electric fields. Although bootstrap theory accounts for contributions of the collisional modification of banana orbits on the toroidal currents, the corresponding transport theory does not accurately predict the transport of particles and heat in present-day tokamak experiments. Furthermore, in our previous simulations in 21/2-D, currents were spontaneously generated in both the cylindrical and the toroidal geometries, contrary to neoclassical predictions. In these calculations, it was believed that the driving mechanism is the preferential loss of particles whose initial velocity is opposite to that of the plasma current. Because the preferential loss mechanism assumes the conservation of toroidal angular momentum, we have extended these simulations to three dimensions to study the effects of toroidal assymetries. A parallel, 3-D electromagnetic PIC code running on the IBM SP, with a localized field-solver has been developed to investigate the effects of perturbations parallel to the field lines, and direct comparisons has been made between the 21/2-D and 3-D simulations, and we have found good agreements between the 2 1/2-D calculations and the 3-D results. We will present these results at the meeting.

  18. Modeling cross-field transport of solar energetic particles including solar wind effects

    NASA Astrophysics Data System (ADS)

    Lampa, Florian; Kallenrode, May-Britt

    Under consideration of solar wind effects, we have extended the Ruffolo's equation of focused transport for solar energetic particles to accommodate perpendicular transport in the ecliptic plane, and made a different approach concerning the reference frame. Numerically, the additional transport term is solved with the implicit and stable Laasonen scheme. In parameter studies and fits to observations for typical ratios κ⊥ /κ ranging between 0.02 and 0.1 at 1 AU as suggested in numerous studies (e.g. non-linear guiding-center theory) and a scaling of κ⊥ with r2 as suggested from the random walk of field lines as well as from numerical simulations, we find that azimuthal spread as well as the variation of maximum intensities with longitude is comparable to the ones inferred from multi-spacecraft observations. Implications for the interpretation of the observed intensity and anisotropy time profiles and consequences for our understanding of particle propagation and acceleration in space will be discussed.

  19. GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

    NASA Astrophysics Data System (ADS)

    Gong, Chunye; Liu, Jie; Chi, Lihua; Huang, Haowei; Fang, Jingyue; Gong, Zhenghu

    2011-07-01

    Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates ( Sn) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.

  20. Modeling of particle and energy transport in the edge plasma of Alcator C-Mod

    NASA Astrophysics Data System (ADS)

    Umansky, M. V.; Krasheninnikov, S. I.; LaBombard, B.; Lipschultz, B.; Terry, J. L.

    1999-07-01

    In the present study recycling and transport in the edge plasma of Alcator C-Mod [I. H. Hutchinson et al., Phys. Plasmas 1, 1511 (1994)] is modeled and analyzed with the multi-fluid code UEDGE [T. D. Rognlien et al., J. Nucl. Mater. 196-198, 347 (1992)]. Matching the experimental plasma density profiles in the scrape-off layer (SOL) requires a spatially dependent effective anomalous diffusion coefficient D⊥ growing rapidly towards the wall. The midplane pressure of neutral gas, Pmid, is a key parameter that reflects the magnitude of anomalous transport of plasma from the core. Recycling of plasma on the main chamber wall appears to be quite significant, especially in the case of high Pmid˜0.3 mTorr when the main wall provides ˜70% of recycling neutrals in the main chamber. In the upper SOL (well above the x point) draining of particles by the poloidal flow is weak and thus the particle balance is predominantly radial. For the radial heat transport it is found that energy flux carried by radial plasma convection and by charge-exchange (CX) neutrals is quite significant in SOL. In the high Pmid case, heat conduction by CX neutrals along with radial heat convection by plasma carries most of the power flux (˜75%) across the last closed flux surface. Even in the low Pmid case, heat conduction by CX neutrals dominates the radial heat flux far out in the SOL.

  1. GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

    SciTech Connect

    Gong Chunye; Liu Jie; Chi Lihua; Huang Haowei; Fang Jingyue; Gong Zhenghu

    2011-07-01

    Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates (S{sub n}) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.

  2. Effects of Natural Organic Matter on Stability, Transport and Deposition of Engineered Nano-particles in Porous Media

    EPA Science Inventory

    The interaction of nano-particles and organic substances, like natural organic matter, could have significant influence on the fate, transport and bioavailability of toxic substances. Natural organic matter (NOM) is a mixture of chemically complex polyelectrolytes with varying m...

  3. Fluid dynamical analysis of a particle with large vapor transport in poiseuille flow.

    PubMed

    Asavatesanupap, Channarong; Sadhal, S S

    2009-04-01

    The fluid dynamics of a particle with vapor transport in the presence of gaseous Poiseuille flow is examined in detail for low translational Reynolds number. Poiseuille flow is used to represent an undisturbed steady flow in a cylindrical tube. The particle has a dominant radial field of condensation, evaporation, sublimation, or other form of gasification, with a corresponding radial Reynolds number of order unity. An analysis is carried out by using the perturbation method in which the purely radial flow is used as the leading order, and Poiseuille flow together with particle translation is a perturbation of higher order. Whereas the leading order motion may be described by potential flow, the higher order involves nonlinear interaction of viscous and inertial forces. With the perturbation process bringing about linearization of this interaction, an Oseen-like solution is obtained. However, with the dominant radial flow being strongly diminishing in the far field, a regular perturbation (instead of singular) is sufficient for the perturbed flow description. Presently, the axisymmetric case of a particle along the centerline of the cylinder is considered. The asymmetric case of the off-center particle is also under examination. The results show that the drag components decrease as the radial Reynolds number increases. The influence of the paraboloidal component of Poiseuille flow is a slight increase in the pressure drag as the ratio of the particle size and the tube radius (a/R(0)) increases for moderate values of the radial Reynolds number (Re(R) < 5). For higher values of Re(R), the pressure drag decreases with increasing (a/R(0)). The viscous drag, on the other hand, consistently decreases as the ratio (a/R(0)) increases. PMID:19426325

  4. The Energetic Particles: Acceleration, Composition, and Transport (EPACT) investigation on the WIND spacecraft

    NASA Astrophysics Data System (ADS)

    von Rosenvinge, T. T.; Barbier, L. M.; Karsch, J.; Liberman, R.; Madden, M. P.; Nolan, T.; Reames, D. V.; Ryan, L.; Singh, S.; Trexel, H.; Winkert, G.; Mason, G. M.; Hamilton, D. C.; Walpole, P.

    1995-02-01

    The Energetic Particles: Acceleration, Composition, and Transport (EPACT) investigation is designed to make comprehensive observations of solar, interplanetary, and galactic particles over wide ranges of charge, mass, energy, and intensity using a combination of 8 different particle telescopes. This paper summarizes the scientific goals of EPACT and provides a detailed description of the instrument design and capabilities. Electrons are measured from 0.2 to 10 MeV, primarily providing time markers for injections of solar particles. Hydrogen is measured from 1.4 to 120 MeV, and Helium is measured from 0.04 to 500 MeV nucl-1. The collection powers and energy ranges for heavier nuclei up to iron are ideal for observations of quiet-time populations such as particles accelerated by interplanetary shocks and the anomalous cosmic rays (thought to be accelerated at the boundary of the heliosphere). The large collection power available is also ideal for observations of3He,4He, and heavier nuclei in impulsive3He-rich solar events. There is even the possibility of observing ultra heavy nuclei (Z>30) in large solar events for the first time. Finally, there is a telescope designed to measure isotopes from He (3.4 55 MeV nucl-1) to Fe (12 230 MeV nucl-1), which is intended for solar particles, the anomalous cosmic rays and galactic cosmic rays. The overall capabilities of EPACT provide scientifically interesting measurements over all phases of the solar cycle. There will also be important opportunities for combined studies with other spacecraft, such as SAMPEX, Ulysses, and Voyagers 1 and 2.

  5. Energetic-particle-driven instabilities and induced fast-ion transport in a reversed field pinch

    SciTech Connect

    Lin, L.; Brower, D. L.; Ding, W. X.; Anderson, J. K.; Capecchi, W.; Eilerman, S.; Forest, C. B.; Koliner, J. J.; Nornberg, M. D.; Reusch, J.; Sarff, J. S.; Liu, D.

    2014-05-15

    Multiple bursty energetic-particle (EP) driven modes with fishbone-like structure are observed during 1 MW tangential neutral-beam injection in a reversed field pinch (RFP) device. The distinguishing features of the RFP, including large magnetic shear (tending to add stability) and weak toroidal magnetic field (leading to stronger drive), provide a complementary environment to tokamak and stellarator configurations for exploring basic understanding of EP instabilities. Detailed measurements of the EP mode characteristics and temporal-spatial dynamics reveal their influence on fast ion transport. Density fluctuations exhibit a dynamically evolving, inboard-outboard asymmetric spatial structure that peaks in the core where fast ions reside. The measured mode frequencies are close to the computed shear Alfvén frequency, a feature consistent with continuum modes destabilized by strong drive. The frequency pattern of the dominant mode depends on the fast-ion species. Multiple frequencies occur with deuterium fast ions compared to single frequency for hydrogen fast ions. Furthermore, as the safety factor (q) decreases, the toroidal mode number of the dominant EP mode transits from n=5 to n=6 while retaining the same poloidal mode number m=1. The transition occurs when the m=1, n=5 wave-particle resonance condition cannot be satisfied as the fast-ion safety factor (q{sub fi}) decreases. The fast-ion temporal dynamics, measured by a neutral particle analyzer, resemble a classical predator-prey relaxation oscillation. It contains a slow-growth phase arising from the beam fueling followed by a rapid drop when the EP modes peak, indicating that the fluctuation-induced transport maintains a stiff fast-ion density profile. The inferred transport rate is strongly enhanced with the onset of multiple EP modes.

  6. Flow and Transport in Smooth and Rough Unsaturated Wide Aperture Fractures with Smoothed Particle Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Kordilla, J.; Tartakovsky, A. M.; Geyer, T.

    2014-12-01

    Unsaturated flow in fractured porous media exhibits highly complex flow dynamics and a wide range of intermittent flow processes. Especially in wide aperture fractures, flow processes may be dominated by gravitational instead of capillary forces leading to a deviation from the classical volume effective approaches (Richard's equation, Van Genuchten type relationships). The existence of various flow modes such as droplets, rivulets, turbulent and adsorbed films is well known, however, their spatial and temporal distribution within fracture networks is still an open question partially due to the lack of appropriate modeling tools. With our work we want to gain a deeper understanding of the underlying flow and transport dynamics in unsaturated fractured media in order to support the development of more refined upscaled methods, applicable on catchment scales. We present pore- and fracture-scale flow simulations obtained with a Smoothed Particle Hydrodynamics (SPH) model. The model allows to simulate free-surface flow dynamics including the effect of surface tension for a wide range of wetting conditions. Several empirical and semi-analytical solutions are used to verify the model. We show that our results satisfy the empirical scaling laws for droplet velocity and critical contact angle. Due to the efficient generation of surface tension via particle-particle interaction forces the dynamic wetting of surfaces as well as the velocity enhancement of droplets on saturated surfaces can readily be obtained. Furthermore, we study the effect of surface roughness on droplet velocities. Lastly, we present flow and transport simulations in the presence of an adjacent porous matrix in order to investigate its influence on the fracture surface flow dynamics and transport across the matrix-fracture interface.

  7. Data decomposition of Monte Carlo particle transport simulations via tally servers

    SciTech Connect

    Romano, Paul K.; Siegel, Andrew R.; Forget, Benoit; Smith, Kord

    2013-11-01

    An algorithm for decomposing large tally data in Monte Carlo particle transport simulations is developed, analyzed, and implemented in a continuous-energy Monte Carlo code, OpenMC. The algorithm is based on a non-overlapping decomposition of compute nodes into tracking processors and tally servers. The former are used to simulate the movement of particles through the domain while the latter continuously receive and update tally data. A performance model for this approach is developed, suggesting that, for a range of parameters relevant to LWR analysis, the tally server algorithm should perform with minimal overhead on contemporary supercomputers. An implementation of the algorithm in OpenMC is then tested on the Intrepid and Titan supercomputers, supporting the key predictions of the model over a wide range of parameters. We thus conclude that the tally server algorithm is a successful approach to circumventing classical on-node memory constraints en route to unprecedentedly detailed Monte Carlo reactor simulations.

  8. Development of perturbation Monte Carlo methods for polarized light transport in a discrete particle scattering model

    PubMed Central

    Nguyen, Jennifer; Hayakawa, Carole K.; Mourant, Judith R.; Venugopalan, Vasan; Spanier, Jerome

    2016-01-01

    We present a polarization-sensitive, transport-rigorous perturbation Monte Carlo (pMC) method to model the impact of optical property changes on reflectance measurements within a discrete particle scattering model. The model consists of three log-normally distributed populations of Mie scatterers that approximate biologically relevant cervical tissue properties. Our method provides reflectance estimates for perturbations across wavelength and/or scattering model parameters. We test our pMC model performance by perturbing across number densities and mean particle radii, and compare pMC reflectance estimates with those obtained from conventional Monte Carlo simulations. These tests allow us to explore different factors that control pMC performance and to evaluate the gains in computational efficiency that our pMC method provides. PMID:27231642

  9. Development of perturbation Monte Carlo methods for polarized light transport in a discrete particle scattering model.

    PubMed

    Nguyen, Jennifer; Hayakawa, Carole K; Mourant, Judith R; Venugopalan, Vasan; Spanier, Jerome

    2016-05-01

    We present a polarization-sensitive, transport-rigorous perturbation Monte Carlo (pMC) method to model the impact of optical property changes on reflectance measurements within a discrete particle scattering model. The model consists of three log-normally distributed populations of Mie scatterers that approximate biologically relevant cervical tissue properties. Our method provides reflectance estimates for perturbations across wavelength and/or scattering model parameters. We test our pMC model performance by perturbing across number densities and mean particle radii, and compare pMC reflectance estimates with those obtained from conventional Monte Carlo simulations. These tests allow us to explore different factors that control pMC performance and to evaluate the gains in computational efficiency that our pMC method provides. PMID:27231642

  10. 3D particle simulation of beams using the WARP code: Transport around bends

    SciTech Connect

    Friedman, A.; Grote, D.P.; Callahan, D.A.; Langdon, A.B. ); Haber, I. )

    1990-11-30

    WARP is a discrete-particle simulation program which was developed for studies of space charge dominated ion beams. It combines features of an accelerator code and a particle-in-cell plasma simulation. The code architecture, and techniques employed to enhance efficiency, are briefly described. Current applications are reviewed. In this paper we emphasize the physics of transport of three-dimensional beams around bends. We present a simple bent-beam PIC algorithm. Using this model, we have followed a long, thin beam around a bend in a simple racetrack system (assuming straight-pipe self-fields). Results on beam dynamics are presented; no transverse emittance growth (at mid-pulse) is observed. 11 refs., 5 figs.

  11. Kelvin-Helmholtz vortex formation and particle transport in a cross-field plasma sheath

    SciTech Connect

    Theilhaber, K.; Birdsall, C.K.

    1989-02-13

    The time-dependent behavior of a magnetized, two-dimensional plasma-wall sheath has been studied through particle simulations, whcih have shown that the cross-field sheath develops into a turbulent boundary layer, driven by the Kelvin-Helmholtz instability. The sheath acquires an equilibrium thickness l/sub x/approx.5rho/sub i/, and maintains long-lived vortices, with amplitudes deltaphiapprox.-2T/sub i//e, which drift parallel to the wall at half the ion thermal velocity. A central simulation result is that for ..omega../sub ..pi../greater than or equal to2..omega../sub ci/, the anomalous particle transport in the sheath scales like Bohn diffusion.

  12. Improved discrete ordinates calculations for an approximate model of neutral particle transport in ducts

    SciTech Connect

    Garcia, R.D.M.; Ono, S.

    1999-09-01

    An improved implementation of the discrete ordinates method for computing neutral particle transport in ducts is presented. The considered one-dimensional model makes use of two basic functions to represent the transverse and azimuthal dependencies of the particle angular flux in the duct. It is shown that if the problem is decomposed into uncollided and collided problems prior to using the discrete ordinates approximation, the number of ordinates necessary to achieve a desired degree of accuracy in the solution can be greatly reduced, especially for long ducts with significant wall absorption. Further savings in computer time can be attained by employing a composite quadrature based on a (nonstandard) half-range quadrature that can be generated in an effective and efficient way with one of the classical methods in the constructive theory of orthogonal polynomials.

  13. Advanced methods in global gyrokinetic full f particle simulation of tokamak transport

    SciTech Connect

    Ogando, F.; Heikkinen, J. A.; Henriksson, S.; Janhunen, S. J.; Kiviniemi, T. P.; Leerink, S.

    2006-11-30

    A new full f nonlinear gyrokinetic simulation code, named ELMFIRE, has been developed for simulating transport phenomena in tokamak plasmas. The code is based on a gyrokinetic particle-in-cell algorithm, which can consider electrons and ions jointly or separately, as well as arbitrary impurities. The implicit treatment of the ion polarization drift and the use of full f methods allow for simulations of strongly perturbed plasmas including wide orbit effects, steep gradients and rapid dynamic changes. This article presents in more detail the algorithms incorporated into ELMFIRE, as well as benchmarking comparisons to both neoclassical theory and other codes.Code ELMFIRE calculates plasma dynamics by following the evolution of a number of sample particles. Because of using an stochastic algorithm its results are influenced by statistical noise. The effect of noise on relevant magnitudes is analyzed.Turbulence spectra of FT-2 plasma has been calculated with ELMFIRE, obtaining results consistent with experimental data.

  14. Slip Effects on Peristaltic Transport of a Particle-Fluid Suspension in a Planar Channel

    PubMed Central

    Kamel, Mohammed H.; Eldesoky, Islam M.; Maher, Bilal M.; Abumandour, Ramzy M.

    2015-01-01

    Peristaltic pumping induced by a sinusoidal traveling wave in the walls of a two-dimensional channel filled with a viscous incompressible fluid mixed with rigid spherical particles is investigated theoretically taking the slip effect on the wall into account. A perturbation solution is obtained which satisfies the momentum equations for the case in which amplitude ratio (wave amplitude/channel half width) is small. The analysis has been carried out by duly accounting for the nonlinear convective acceleration terms and the slip condition for the fluid part on the wavy wall. The governing equations are developed up to the second order of the amplitude ratio. The zeroth-order terms yield the Poiseuille flow and the first-order terms give the Orr-Sommerfeld equation. The results show that the slip conditions have significant effect within certain range of concentration. The phenomenon of reflux (the mean flow reversal) is discussed under slip conditions. It is found that the critical reflux pressure is lower for the particle-fluid suspension than for the particle-free fluid and is affected by slip condition. A motivation of the present analysis has been the hope that such theory of two-phase flow process under slip condition is very useful in understanding the role of peristaltic muscular contraction in transporting biofluid behaving like a particle-fluid mixture. Also the theory is important to the engineering applications of pumping solid-fluid mixture by peristalsis. PMID:27019591

  15. A Generalized Boltzmann Fokker-Planck Method for Coupled Charged Particle Transport

    SciTech Connect

    Prinja, Anil K

    2012-01-09

    The goal of this project was to develop and investigate the performance of reduced-physics formulations of high energy charged particle (electrons, protons and heavier ions) transport that are computationally more efficient than not only analog Monte Carlo methods but also the established condensed history Monte Carlo technique. Charged particles interact with matter by Coulomb collisions with target nuclei and electrons, by bremsstrahlung radiation loss and by nuclear reactions such as spallation and fission. Of these, inelastic electronic collisions and elastic nuclear collisions are the dominant cause of energy-loss straggling and angular deflection or range straggling of a primary particle. These collisions are characterized by extremely short mean free paths (sub-microns) and highly peaked, near-singular differential cross sections about forward directions and zero energy loss, with the situation for protons and heavier ions more extreme than for electrons. For this reason, analog or truephysics single-event Monte Carlo simulation, while possible in principle, is computationally prohibitive for routine calculation of charged particle interaction phenomena.

  16. Wave induced mixing and transport of buoyant particles: application to the Statfjord A oil spill

    NASA Astrophysics Data System (ADS)

    Drivdal, M.; Broström, G.; Christensen, K. H.

    2014-05-01

    The modelling of wave-current and wave-turbulence interactions have received much attention in recent years. In this study the focus is on how these wave effects modify the transport of particles in the ocean. Here the particles are buoyant tracers that can represent oil droplets, plastic particles or plankton, for example fish eggs and larvae. Using the General Ocean Turbulence Model (GOTM), modified to take surface wave effects into account, we investigate how the increased mixing by wave breaking and Stokes shear production as well as the stronger veering by the Coriolis-Stokes force affect the drift of the particles. The energy and momentum fluxes as well as the Stokes drift depend on the directional wave spectrum that can be obtained from a wave model or from observations. As a first test the depth and velocity scales from the model are compared with analytical solutions based on a constant eddy viscosity (e.g. classical Ekman theory). Secondly the model is applied to a case where we investigate the oil drift after an offshore oil spill outside the western coast of Norway in 2007. During this accident the average net drift of oil was observed to be both slower and more deflected away from the wind direction than predicted by empirical models. With wind and wave forcing from the ERA Interim archive, it is shown that the wave effects are important for the resultant drift in this case, and has the potential to improve drift forecasting.

  17. Wave-induced mixing and transport of buoyant particles: application to the Statfjord A oil spill

    NASA Astrophysics Data System (ADS)

    Drivdal, M.; Broström, G.; Christensen, K. H.

    2014-12-01

    This study focuses on how wave-current and wave-turbulence interactions modify the transport of buoyant particles in the ocean. Here the particles can represent oil droplets, plastic particles, or plankton such as fish eggs and larvae. Using the General Ocean Turbulence Model (GOTM), modified to take surface wave effects into account, we investigate how the increased mixing by wave breaking and Stokes shear production, as well as the stronger veering by the Coriolis-Stokes force, affects the drift of the particles. The energy and momentum fluxes, as well as the Stokes drift, depend on the directional wave spectrum obtained from a wave model. As a first test, the depth and velocity scales from the model are compared with analytical solutions based on a constant eddy viscosity (i.e., classical Ekman theory). Secondly, the model is applied to a case in which we investigate the oil drift after an oil spill off the west coast of Norway in 2007. During this accident the average net drift of oil was observed to be both slower and more deflected away from the wind direction than predicted by oil-drift models. In this case, using wind and wave forcing from the ERA Interim archive it is shown that the wave effects are important for the resultant drift and have the potential to improve drift forecasting.

  18. A simple stochastic quadrant model for the transport and deposition of particles in turbulent boundary layers

    SciTech Connect

    Jin, C.; Potts, I.; Reeks, M. W.

    2015-05-15

    We present a simple stochastic quadrant model for calculating the transport and deposition of heavy particles in a fully developed turbulent boundary layer based on the statistics of wall-normal fluid velocity fluctuations obtained from a fully developed channel flow. Individual particles are tracked through the boundary layer via their interactions with a succession of random eddies found in each of the quadrants of the fluid Reynolds shear stress domain in a homogeneous Markov chain process. In this way, we are able to account directly for the influence of ejection and sweeping events as others have done but without resorting to the use of adjustable parameters. Deposition rate predictions for a wide range of heavy particles predicted by the model compare well with benchmark experimental measurements. In addition, deposition rates are compared with those obtained from continuous random walk models and Langevin equation based ejection and sweep models which noticeably give significantly lower deposition rates. Various statistics related to the particle near wall behavior are also presented. Finally, we consider the model limitations in using the model to calculate deposition in more complex flows where the near wall turbulence may be significantly different.

  19. Effects of applied dc radial electric fields on particle transport in a bumpy torus plasma

    NASA Technical Reports Server (NTRS)

    Roth, J. R.

    1978-01-01

    The influence of applied dc radial electric fields on particle transport in a bumpy torus plasma is studied. The plasma, magnetic field, and ion heating mechanism are operated in steady state. Ion kinetic temperature is more than a factor of ten higher than electron temperature. The electric fields raise the ions to energies on the order of kilovolts and then point radially inward or outward. Plasma number density profiles are flat or triangular across the plasma diameter. It is suggested that the radial transport processes are nondiffusional and dominated by strong radial electric fields. These characteristics are caused by the absence of a second derivative in the density profile and the flat electron temperature profiles. If the electric field acting on the minor radius of the toroidal plasma points inward, plasma number density and confinement time are increased.

  20. Determination of macroscopic transport coefficients of a dissipative particle dynamics solvent

    NASA Astrophysics Data System (ADS)

    Azarnykh, Dmitrii; Litvinov, Sergey; Bian, Xin; Adams, Nikolaus A.

    2016-01-01

    We present an approach to determine macroscopic transport coefficients of a dissipative particle dynamics (DPD) solvent. Shear viscosity, isothermal speed of sound, and bulk viscosity result from DPD-model input parameters and can be determined only a posteriori. For this reason approximate predictions of these quantities are desirable in order to set appropriate DPD input parameters. For the purpose of deriving an improved approximate prediction we analyze the autocorrelation of shear and longitudinal modes in Fourier space of a DPD solvent for Kolmogorov flow. We propose a fitting function with nonexponential properties which gives a good approximation to these autocorrelation functions. Given this fitting function we improve significantly the capability of a priori determination of macroscopic solvent transport coefficients in comparison to previously used exponential fitting functions.

  1. Determination of macroscopic transport coefficients of a dissipative particle dynamics solvent.

    PubMed

    Azarnykh, Dmitrii; Litvinov, Sergey; Bian, Xin; Adams, Nikolaus A

    2016-01-01

    We present an approach to determine macroscopic transport coefficients of a dissipative particle dynamics (DPD) solvent. Shear viscosity, isothermal speed of sound, and bulk viscosity result from DPD-model input parameters and can be determined only a posteriori. For this reason approximate predictions of these quantities are desirable in order to set appropriate DPD input parameters. For the purpose of deriving an improved approximate prediction we analyze the autocorrelation of shear and longitudinal modes in Fourier space of a DPD solvent for Kolmogorov flow. We propose a fitting function with nonexponential properties which gives a good approximation to these autocorrelation functions. Given this fitting function we improve significantly the capability of a priori determination of macroscopic solvent transport coefficients in comparison to previously used exponential fitting functions. PMID:26871186

  2. Particle-Based Direct Numerical Simulation of Contaminant Transport and Deposition in Porous Flow

    SciTech Connect

    Ray A. Berry; Richard C. Martineau; Thomas R. Wood

    2004-02-01

    This work describes an approach to porous flow modeling in which the "micro-length scale to macro-length scale" physical descriptions are addressed as Lagrangian, pore-level flow and transport. The flow features of the physical domain are solved by direct numerical simulation (DNS) with a grid-free, hybrid smoothed particle hydrodynamics (SPH) numerical method (Berry, 2002) based on a local Riemann solution. In addition to being able to handle the large deformation, fluid–fluid and fluid–solid interactions within the contorted geometries of intra- and inter-pore-scale modeling, this Riemann–SPH method should be able to simulate other complexities, such as multiple fluid phases and chemical, particulate, and microbial transport with volumetric and surface reactions. A simple model is presented for the transfer of a contaminant from a carrier fluid to solid surfaces and is demonstrated for flow in a simulated porous media

  3. Transport and efficiency of Brownian particles in confined narrow channels with a periodic driving force

    NASA Astrophysics Data System (ADS)

    Wang, Rang; Zhou, Jia-Ning; Liu, Xue-Mei; Xiao, Hua

    2015-11-01

    Transport and efficiency of over-damped Brownian particles moving in a confined narrow channel is investigated in the presence of an oscillating force and a static load force. It is found that the average velocity increases monotonously with the unbiased external driving force, while the efficiency can be a peaked function of unbiased external force, which indicates that the unbiased external force can facilitate the efficiency of energy transformation. Moreover, the average velocity and the efficiency demonstrate complex behaviors due to the consideration of Stokes efficiency.

  4. The diffusive idealization of charged-particle transport in random magnetic fields. [cosmic ray propagation

    NASA Technical Reports Server (NTRS)

    Earl, J. A.

    1974-01-01

    The uniqueness and accuracy of the equations which describe the transport of charged particles diffusing in a random magnetic field parallel to a relatively large guiding field is examined. With regard to uniqueness, it is found that the same coefficient of diffusion is obtained by three methods that have apparently led to discrepancies in previous work. With regard to accuracy, it is found that two corrections must be added to Fick's law in which the diffusive flux is proportional to the gradient of the density. Explicit expressions are given for a characteristic time and a characteristic length which describe the corrections.

  5. Electronic excitation transport in core antennae of enriched photosystem I particles from spinach chloroplasts

    SciTech Connect

    Causgrove, T.P.; Yang, S.; Struve, W.S.

    1988-10-20

    The polarized photobleaching recovery of PSI-60 particles enriched in iron-sulfur protein and P700 was monitored with approx. 2-ps resolution at 665, 670, 675, and 681 nm. Considerable residual anisotropy appears at long times, proving that local ordering exists in the Chl a-protein core antenna of PSI-60. At these four wavelengths, the polarization decays with mean lifetimes between 2.9 and 6.6 ps. This slow time scale suggests that the depolarization accompanies electronic excitation transport between clusters of Chl a chromophores rather than between individual nearest-neighbor chromophores.

  6. Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems.

    PubMed

    Li, Zhen; Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-07-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic dissipative particle dynamics (DPD) framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of these Lagrangian particles. An analytical formula is proposed to relate the tDPD parameters to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-speci