Science.gov

Sample records for invading fish species

  1. Ancient fish and recent invaders: white sturgeon Acipenser transmontanus diet response to invasive-species-mediated changes in a benthic prey assemblage

    USGS Publications Warehouse

    Zeug, Steven C; Brodsky, Annie; Kogut, Nina; Stewart, Robin; Merz, Joe

    2014-01-01

    Invasive organisms can have significant impacts on native species, and the San Francisco Estuary (SFE), California, USA, is one of the world's most invaded estuaries. Decline of native white sturgeon Acipenser transmontanus abundance in the SFE has been acknowledged, but underlying mechanisms are poorly understood. Invasion by the overbite clam Potamocorbula amurensis has drastically altered the SFE benthic prey community, yet little is known about how this change has affected sturgeon diets. We investigated changes in the diet of white sturgeon following the overbite clam invasion and subsequent shift in the SFE benthic prey assemblage. Gut content analysis was used to compare white sturgeon prey composition and importance between the pre- and post-invasion periods. Additionally, stable isotope analysis was employed to estimate the assimilation of prey items to sturgeon biomass. Overbite clams dominated diets in the post-invasion period, accounting for 82 to 93% of total volume. Stable isotope analysis confirmed the importance of this prey item, although their assimilated contribution to sturgeon biomass was estimated to be less (70 to 83%) than gut contents indicated. The frequency of fish in white sturgeon guts increased in the post-invasion period, and isotope analysis indicated relatively large contributions of fish to sturgeon biomass (3.7 to 19%). The trophic adaptability of white sturgeon has allowed them to exploit this new prey source (overbite clam). Future conservation and restoration efforts must consider a potentially destabilized food web given the large importance of a single prey item.

  2. Exotic invaders gain foraging benefits by shoaling with native fish

    PubMed Central

    Camacho-Cervantes, Morelia; Garcia, Constantino Macías; Ojanguren, Alfredo F.; Magurran, Anne E.

    2014-01-01

    Freshwater habitats are under increasing threat due to invasions of exotic fish. These invasions typically begin with the introduction of small numbers of individuals unfamiliar with the new habitat. One way in which the invaders might overcome this disadvantage is by associating with native taxa occupying a similar ecological niche. Here we used guppies (Poecilia reticulata) from a feral population in Mexico to test the prediction that exotic shoaling fish can associate with heterospecifics, and that they improve their foraging efficiency by doing so. Guppies have invaded the Mexican High Plateau and are implicated in the declines of many native topminnow (Goodeinae) species. We show that heterospecific associations between guppies and topminnows can deliver the same foraging benefits as conspecific shoals, and that variation in foraging gains is linked to differences in association tendency. These results uncover a mechanism enabling founding individuals to survive during the most vulnerable phase of an invasion and help explain why guppies have established viable populations in many parts of Mexico as well in every continent except Antarctica. PMID:26064552

  3. Invading species in the Eel River, California: Successes, failures, and relationships with resident species

    USGS Publications Warehouse

    Brown, L.R.; Moyle, P.B.

    1997-01-01

    We examined invasions of non-native fishes into the Eel River, California. At least 16 species of fish have been introduced into the drainage which originally supported 12-14 fish species. Our study was prompted by the unauthorized introduction in 1979 of Sacramento squawfish, Ptychocheilus grandis, a large predatory cyprinid. From 1986 to 1990, we conducted growth and diet studies of squaw fish, conducted intensive surveys of the distribution and habitat associations of both native and introduced species, and examined the nature of species-habitat and interspecies relationships. We found no evidence for increased growth or expanded feeding habits, compared to native populations, of Sacramento squawfish as they invaded the Eel River drainage. Ten of the introduced species were well established, with four species limited to a reservoir and six species established in streams. The success or failure of introductions of stream species appeared to be a function of the ability of a species to survive the fluctuating, highly seasonal, flow regime. The present mixture of native and exotic species has not formed stable fish assemblages but it seems likely that four habitat-associated assemblages will develop. The overall effect of the successful species introductions has been to assemble a group of species, with some exceptions, that are native to and occur together in many California streams. The assemblages now forming are similar to those found in other California streams. The assemblage characterized by squawfish and suckers is likely to be resistant to invasion, in the absence of human caused habitat modifications.

  4. Can we say: There is a <5% chance a new fish has invaded the St. Louis River? Evolving aquatic invasive species early detection

    EPA Science Inventory

    The Great Lakes Water Quality Agreement, Annex 6 calls for a U.S.-Canada, basin-wide aquatic invasive species early detection network by 2015. The objective of our research is to explore survey design strategies that can improve detection efficiency, and to develop performance me...

  5. Identifying Preservation and Restoration Priority Areas for Desert Fishes in an Increasingly Invaded World

    NASA Astrophysics Data System (ADS)

    Pool, Thomas K.; Strecker, Angela L.; Olden, Julian D.

    2013-03-01

    A commonly overlooked aspect of conservation planning assessments is that wildlife managers are increasingly focused on habitats that contain non-native species. We examine this management challenge in the Gila River basin (150,730 km2), and present a new planning strategy for fish conservation. By applying a hierarchical prioritization algorithm to >850,000 fish records in 27,181 sub-watersheds we first identified high priority areas (PAs) termed "preservation PAs" with high native fish richness and low non-native richness; these represent traditional conservation targets. Second, we identified "restoration PAs" with high native fish richness that also contained high numbers of non-native species; these represent less traditional conservation targets. The top 10 % of preservation and restoration PAs contained common native species (e.g., Catostomus clarkii, desert sucker; Catostomus insignis, Sonora sucker) in addition to native species with limited distributions (i.e., Xyrauchen texanus, razorback sucker; Oncorhynchus gilae apache, Apache trout). The top preservation and restoration PAs overlapped by 42 %, indicating areas with high native fish richness range from minimally to highly invaded. Areas exclusively identified as restoration PAs also encompassed a greater percentage of native species ranges than would be expected by the random addition of an equivalent basin area. Restoration PAs identified an additional 19.0 and 26.6 % of the total ranges of two federally endangered species— Meda fulgida (spikedace) and Gila intermedia (Gila chub), respectively, compared to top preservation PAs alone—despite adding only 5.8 % of basin area. We contend that in addition to preservation PAs, restoration PAs are well suited for complementary management activities benefiting native fishes.

  6. Exotic plant species invade hot spots of native plant diversity

    USGS Publications Warehouse

    Stohlgren, T.J.; Binkley, D.; Chong, G.W.; Kalkhan, M.A.; Schell, L.D.; Bull, K.A.; Otsuki, Y.; Newman, G.; Bashkin, M.; Yowhan, S.

    1999-01-01

    Some theories and experimental studies suggest that areas of low plant species richness may be invaded more easily than areas of high plant species richness. We gathered nested-scale vegetation data on plant species richness, foliar cover, and frequency from 200 1-m2 subplots (20 1000-m2 modified-Whittaker plots) in the Colorado Rockies (USA), and 160 1-m2 subplots (16 1000-m2 plots) in the Central Grasslands in Colorado, Wyoming, South Dakota, and Minnesota (USA) to test the generality of this paradigm. At the 1-m2 scale, the paradigm was supported in four prairie types in the Central Grasslands, where exotic species richness declined with increasing plant species richness and cover. At the 1-m2 scale, five forest and meadow vegetation types in the Colorado Rockies contradicted the paradigm; exotic species richness increased with native-plant species richness and foliar cover. At the 1000-m2 plot scale (among vegetation types), 83% of the variance in exotic species richness in the Central Grasslands was explained by the total percentage of nitrogen in the soil and the cover of native plant species. In the Colorado Rockies, 69% of the variance in exotic species richness in 1000-m2 plots was explained by the number of native plant species and the total percentage of soil carbon. At landscape and biome scales, exotic species primarily invaded areas of high species richness in the four Central Grasslands sites and in the five Colorado Rockies vegetation types. For the nine vegetation types in both biomes, exotic species cover was positively correlated with mean foliar cover, mean soil percentage N, and the total number of exotic species. These patterns of invasibility depend on spatial scale, biome and vegetation type, spatial autocorrelation effects, availability of resources, and species-specific responses to grazing and other disturbances. We conclude that: (1) sites high in herbaceous foliar cover and soil fertility, and hot spots of plant diversity (and

  7. Two invasive acacia species secure generalist pollinators in invaded communities

    NASA Astrophysics Data System (ADS)

    Montesinos, Daniel; Castro, Sílvia; Rodríguez-Echeverría, Susana

    2016-07-01

    Exotic entomophilous plants need to establish effective pollinator interactions in order to succeed after being introduced into a new community, particularly if they are obligatory outbreeders. By establishing these novel interactions in the new non-native range, invasive plants are hypothesised to drive changes in the composition and functioning of the native pollinator community, with potential impacts on the pollination biology of native co-flowering plants. We used two different sites in Portugal, each invaded by a different acacia species, to assess whether two native Australian trees, Acacia dealbata and Acacia longifolia, were able to recruit pollinators in Portugal, and whether the pollinator community visiting acacia trees differed from the pollinator communities interacting with native co-flowering plants. Our results indicate that in the invaded range of Portugal both acacia species were able to establish novel mutualistic interactions, predominantly with generalist pollinators. For each of the two studied sites, only two other co-occurring native plant species presented partially overlapping phenologies. We observed significant differences in pollinator richness and visitation rates among native and non-native plant species, although the study of β diversity indicated that only the native plant Lithodora fruticosa presented a differentiated set of pollinator species. Acacias experienced a large number of visits by numerous pollinator species, but massive acacia flowering resulted in flower visitation rates frequently lower than those of the native co-flowering species. We conclude that the establishment of mutualisms in Portugal likely contributes to the effective and profuse production of acacia seeds in Portugal. Despite the massive flowering of A. dealbata and A. longifolia, native plant species attained similar or higher visitation rates than acacias.

  8. Niche shift can impair the ability to predict invasion risk in the marine realm: an illustration using Mediterranean fish invaders.

    PubMed

    Parravicini, Valeriano; Azzurro, Ernesto; Kulbicki, Michel; Belmaker, Jonathan

    2015-03-01

    Climatic niche conservatism, the tendency of species-climate associations to remain unchanged across space and time, is pivotal for forecasting the spread of invasive species and biodiversity changes. Indeed, it represents one of the key assumptions underlying species distribution models (SDMs), the main tool currently available for predicting range shifts of species. However, to date, no comprehensive assessment of niche conservatism is available for the marine realm. We use the invasion by Indo-Pacific tropical fishes into the Mediterranean Sea, the world's most invaded marine basin, to examine the conservatism of the climatic niche. We show that tropical invaders may spread far beyond their native niches and that SDMs do not predict their new distributions better than null models. Our results suggest that SDMs may underestimate the potential spread of invasive species and call for prudence in employing these models in order to forecast species invasion and their response to environmental change. PMID:25626355

  9. Recruitment of two Opuntia species invading abandoned olive groves

    NASA Astrophysics Data System (ADS)

    Gimeno, Isabel; Vilà, Montserrat

    2002-08-01

    In Europe, many agricultural areas are now abandoned and hence can be invaded by exotic species. The abundance and spatial distribution patterns of two Opuntia species were studied in old olive groves in the Parc Natural del Cap de Creus, Catalonia (Spain). Seedling recruitment (97.3% and 51.5% of juveniles for O. maxima and O. stricta, respectively) was higher than recruitment by cladodes. O. maxima had more seedlings recruited beneath olive trees and beneath Opuntia adults than expected. Most O. stricta seedlings were also located beneath Opuntia adult plants. However, although most seedlings were recruited beneath Opuntia, some (10-30%) were found away from putative parental plants. This may be due to seed dispersal by birds and wild boars. Seeds dispersed by wild boars were not significantly more viable than seeds from intact fruits. Seedlings grow very slowly but have a high survival rate. In conclusion, Opuntia seedling recruitment is very successful and ensures the persistence of these species within old olive groves. Consequently, it prevents restoration from an agricultural land-use back to the native community.

  10. Grassland invader responses to realistic changes in native species richness.

    PubMed

    Rinella, Matthew J; Pokorny, Monica L; Rekaya, Romdhane

    2007-09-01

    The importance of species richness for repelling exotic plant invasions varies from ecosystem to ecosystem. Thus, in order to prioritize conservation objectives, it is critical to identify those ecosystems where decreasing richness will most greatly magnify invasion risks. Our goal was to determine if invasion risks greatly increase in response to common reductions in grassland species richness. We imposed treatments that mimic management-induced reductions in grassland species richness (i.e., removal of shallow- and/or deep-rooted forbs and/or grasses and/or cryptogam layers). Then we introduced and monitored the performance of a notorious invasive species (i.e., Centaurea maculosa). We found that, on a per-gram-of-biomass basis, each resident plant group similarly suppressed invader growth. Hence, with respect to preventing C. maculosa invasions, maintaining overall productivity is probably more important than maintaining the productivity of particular plant groups or species. But at the sites we studied, all plant groups may be needed to maintain overall productivity because removing forbs decreased overall productivity in two of three years. Alternatively, removing forbs increased productivity in another year, and this led us to posit that removing forbs may inflate the temporal productivity variance as opposed to greatly affecting time-averaged productivity. In either case, overall productivity responses to single plant group removals were inconsistent and fairly modest, and only when all plant groups were removed did C. maculosa growth increase substantially over a no-removal treatment. As such, it seems that intense disturbances (e.g., prolonged drought, overgrazing) that deplete multiple plant groups may often be a prerequisite for C. maculosa invasion. PMID:17913143

  11. Differences in ecological structure, function, and native species abundance between native and invaded Hawaiian streams.

    PubMed

    Holitzki, Tara M; MacKenzie, Richard A; Wiegner, Tracy N; McDermid, Karla J

    2013-09-01

    Poeciliids, one of the most invasive species worldwide, are found on almost every continent and have been identified as an "invasive species of concern" in the United States, New Zealand, and Australia. Despite their global prevalence, few studies have quantified their impacts on tropical stream ecosystem structure, function, and biodiversity. Utilizing Hawaiian streams as model ecosystems, we documented how ecological structure, function, and native species abundance differed between poeciliid-free and poeciliid-invaded tropical streams. Stream nutrient yields, benthic biofilm biomass, densities of macroinvertebrates and fish, and community structures of benthic algae, macroinvertebrates, and fish were compared between streams with and without established poeciliid populations on the island of Hawai'i, Hawaii, USA. Sum nitrate (sigmaNO3(-) = NO3(-) + NO2(-)), total nitrogen, and total organic carbon yields were eight times, six times, and five times higher, respectively, in poeciliid streams than in poeciliid-free streams. Benthic biofilm ash-free dry mass was 1.5x higher in poeciliid streams than in poeciliid-free streams. Percentage contributions of chironomids and hydroptilid caddisflies to macroinvertebrate densities were lower in poeciliid streams compared to poeciliid-free streams, while percentage contributions of Cheumatopsyche analis caddisflies, Dugesia sp. flatworms, and oligochaetes were higher. Additionally, mean densities of native gobies were two times lower in poeciliid streams than in poeciliid-free ones, with poeciliid densities being approximately eight times higher than native fish densities. Our results, coupled with the wide distribution of invasive poeciliids across Hawaii and elsewhere in the tropics, suggest that poeciliids may negatively impact the ecosystem structure, function, and native species abundance of tropical streams they invade. This underscores the need for increased public awareness to prevent future introductions and for

  12. "Invented Invaders": An Engaging Activity to Teach Characteristics Control of Invasive Species

    ERIC Educational Resources Information Center

    Lampert, Evan

    2015-01-01

    Invasive species, defined as exotic species that reach pest status, are major threats to global biodiversity. Although invasive species can belong to any taxonomic group, general characteristics such as rapid growth and reproduction are shared by many invasive species. "Invented Invaders" is a collaborative activity in which students…

  13. Aquatic biofilms and their responses to disinfection and invading species

    NASA Technical Reports Server (NTRS)

    Smithers, G. A.; Rodgers, E. B.; Obenhuber, D. C.; Huff, T. L.

    1992-01-01

    The control of microbial contamination is a primary concern in the development of a water reclamation system for long-duration manned space flights. This paper describes bench-scale experiments, using both static and recycling water systems, investigating the interaction of bacterial species in the development of a biofilm and their response to the introduction of a disinfectant or of additional species. The results showed that iodine concentrations as high as 15 to 20 mg/l I2 are necessary to completely disinfect a stable biofilm. When S. aueus and E. coli were introduced into a system containing natural mixed culture biofilms, their colonization in the biofilms increased their survival time, from 3 to 5 days as unattached cells to over 60 days when protected in the biofilms. While iodine concentrations of 0.5 to 1 mg/l were enough to eliminate these organisms from the bulk water, concentrations higher than 4.0 mg/l were necessary to completely eliminate these organisms from the biofilm.

  14. Habitat shift in invading species: Zebra and quagga mussel population characteristics on shallow soft substrates

    USGS Publications Warehouse

    Berkman, P.A.; Garton, D.W.; Haltuch, M.A.; Kennedy, G.W.; Febo, L.R.

    2000-01-01

    Unexpected habitat innovations among invading species are illustrated by the expansion of dreissenid mussels across sedimentary environments in shallow water unlike the hard substrates where they are conventionally known. In this note, records of population characteristics of invading zebra (Dreissena polymorpha) and quagga (Dreissena bugensis) mussels from 1994 through 1998 are reported from shallow (less than 20 m) sedimentary habitats in western Lake Erie. Haphazard SCUBA collections of these invading species indicated that combined densities of zebra and quagga mussels ranged from 0 to 32,500 individuals per square meter between 1994 and 1998, with D. polymorpha comprising 75-100% of the assemblages. These mixed mussel populations, which were attached by byssal threads to each other and underlying sand-grain sediments, had size-frequency distributions that were typical of colonizing populations on hard substrates. Moreover, the presence of two mussel cohorts within the 1994 samples indicated that these species began expanding onto soft substrates not later than 1992, within 4 years of their initial invasion in western Lake Erie. Such historical data provide baselines for interpreting adaptive innovations, ecological interactions and habitat shifts among the two invading dreissenid mussel species in North America.

  15. Functional equivalence, competitive hierarchy and facilitation determine species coexistence in highly invaded grasslands.

    PubMed

    Gross, Nicolas; Liancourt, Pierre; Butters, Robyn; Duncan, Richard P; Hulme, Philip E

    2015-04-01

    Alien and native plant species often differ in functional traits. Trait differences could lead to niche differences that minimize competitive interactions and stabilize coexistence. However, trait differences could also translate into average fitness differences, leading to a competitive hierarchy that prevents coexistence. We tested whether trait differences between alien and native species translated into average fitness or stabilizing niche differences, and whether competition could explain observed coexistence within invaded grassland communities (New Zealand). Trait differences reflected marked competitive hierarchy, suggesting average fitness differences. Species coexistence was determined by a trade-off between species susceptibility to herbivory vs competitive hierarchy and facilitation. Importantly, although aliens and natives differed in their trait values, they did not differ in their competitive response, highlighting the importance of equalizing mechanisms in structuring invaded communities. Only a few alien species with a particular set of traits were able to jeopardize species coexistence when grazing was ceased. Our study explains why some alien species coexist with natives, whereas others have strong impacts on native communities. It highlights that trait differences can underlie several coexistence processes and that the demonstration of trait differences between aliens and natives is only a first step to understanding the role of biotic interactions in structuring invaded communities. PMID:25388949

  16. Impacts of invading alien plant species on water flows at stand and catchment scales.

    PubMed

    Le Maitre, D C; Gush, M B; Dzikiti, S

    2015-01-01

    There have been many studies of the diverse impacts of invasions by alien plants but few have assessed impacts on water resources. We reviewed the information on the impacts of invasions on surface runoff and groundwater resources at stand to catchment scales and covering a full annual cycle. Most of the research is South African so the emphasis is on South Africa's major invaders with data from commercial forest plantations where relevant. Catchment studies worldwide have shown that changes in vegetation structure and the physiology of the dominant plant species result in changes in surface runoff and groundwater discharge, whether they involve native or alien plant species. Where there is little change in vegetation structure [e.g. leaf area (index), height, rooting depth and seasonality] the effects of invasions generally are small or undetectable. In South Africa, the most important woody invaders typically are taller and deeper rooted than the native species. The impacts of changes in evaporation (and thus runoff) in dryland settings are constrained by water availability to the plants and, thus, by rainfall. Where the dryland invaders are evergreen and the native vegetation (grass) is seasonal, the increases can reach 300-400 mm/year. Where the native vegetation is evergreen (shrublands) the increases are ∼200-300 mm/year. Where water availability is greater (riparian settings or shallow water tables), invading tree water-use can reach 1.5-2.0 times that of the same species in a dryland setting. So, riparian invasions have a much greater impact per unit area invaded than dryland invasions. The available data are scattered and incomplete, and there are many gaps and issues that must be addressed before a thorough understanding of the impacts at the site scale can be gained and used in extrapolating to watershed scales, and in converting changes in flows to water supply system yields. PMID:25935861

  17. Impacts of invading alien plant species on water flows at stand and catchment scales

    PubMed Central

    Le Maitre, D. C.; Gush, M. B.; Dzikiti, S.

    2015-01-01

    There have been many studies of the diverse impacts of invasions by alien plants but few have assessed impacts on water resources. We reviewed the information on the impacts of invasions on surface runoff and groundwater resources at stand to catchment scales and covering a full annual cycle. Most of the research is South African so the emphasis is on South Africa's major invaders with data from commercial forest plantations where relevant. Catchment studies worldwide have shown that changes in vegetation structure and the physiology of the dominant plant species result in changes in surface runoff and groundwater discharge, whether they involve native or alien plant species. Where there is little change in vegetation structure [e.g. leaf area (index), height, rooting depth and seasonality] the effects of invasions generally are small or undetectable. In South Africa, the most important woody invaders typically are taller and deeper rooted than the native species. The impacts of changes in evaporation (and thus runoff) in dryland settings are constrained by water availability to the plants and, thus, by rainfall. Where the dryland invaders are evergreen and the native vegetation (grass) is seasonal, the increases can reach 300–400 mm/year. Where the native vegetation is evergreen (shrublands) the increases are ∼200–300 mm/year. Where water availability is greater (riparian settings or shallow water tables), invading tree water-use can reach 1.5–2.0 times that of the same species in a dryland setting. So, riparian invasions have a much greater impact per unit area invaded than dryland invasions. The available data are scattered and incomplete, and there are many gaps and issues that must be addressed before a thorough understanding of the impacts at the site scale can be gained and used in extrapolating to watershed scales, and in converting changes in flows to water supply system yields. PMID:25935861

  18. Herbaceous plant species invading natural areas tend to have stronger adaptive root foraging than other naturalized species.

    PubMed

    Keser, Lidewij H; Visser, Eric J W; Dawson, Wayne; Song, Yao-Bin; Yu, Fei-Hai; Fischer, Markus; Dong, Ming; van Kleunen, Mark

    2015-01-01

    Although plastic root-foraging responses are thought to be adaptive, as they may optimize nutrient capture of plants, this has rarely been tested. We investigated whether nutrient-foraging responses are adaptive, and whether they pre-adapt alien species to become natural-area invaders. We grew 12 pairs of congeneric species (i.e., 24 species) native to Europe in heterogeneous and homogeneous nutrient environments, and compared their foraging responses and performance. One species in each pair is a USA natural-area invader, and the other one is not. Within species, individuals with strong foraging responses, measured as plasticity in root diameter and specific root length, had a higher biomass. Among species, the ones with strong foraging responses, measured as plasticity in root length and root biomass, had a higher biomass. Our results therefore suggest that root foraging is an adaptive trait. Invasive species showed significantly stronger root-foraging responses than non-invasive species when measured as root diameter. Biomass accumulation was decreased in the heterogeneous vs. the homogeneous environment. In aboveground, but not belowground and total biomass, this decrease was smaller in invasive than in non-invasive species. Our results show that strong plastic root-foraging responses are adaptive, and suggest that it might aid in pre-adapting species to becoming natural-area invaders. PMID:25964790

  19. Herbaceous plant species invading natural areas tend to have stronger adaptive root foraging than other naturalized species

    PubMed Central

    Keser, Lidewij H.; Visser, Eric J. W.; Dawson, Wayne; Song, Yao-Bin; Yu, Fei-Hai; Fischer, Markus; Dong, Ming; van Kleunen, Mark

    2015-01-01

    Although plastic root-foraging responses are thought to be adaptive, as they may optimize nutrient capture of plants, this has rarely been tested. We investigated whether nutrient-foraging responses are adaptive, and whether they pre-adapt alien species to become natural-area invaders. We grew 12 pairs of congeneric species (i.e., 24 species) native to Europe in heterogeneous and homogeneous nutrient environments, and compared their foraging responses and performance. One species in each pair is a USA natural-area invader, and the other one is not. Within species, individuals with strong foraging responses, measured as plasticity in root diameter and specific root length, had a higher biomass. Among species, the ones with strong foraging responses, measured as plasticity in root length and root biomass, had a higher biomass. Our results therefore suggest that root foraging is an adaptive trait. Invasive species showed significantly stronger root-foraging responses than non-invasive species when measured as root diameter. Biomass accumulation was decreased in the heterogeneous vs. the homogeneous environment. In aboveground, but not belowground and total biomass, this decrease was smaller in invasive than in non-invasive species. Our results show that strong plastic root-foraging responses are adaptive, and suggest that it might aid in pre-adapting species to becoming natural-area invaders. PMID:25964790

  20. Habitat complexity and fish size affect the detection of Indo-Pacific lionfish on invaded coral reefs

    NASA Astrophysics Data System (ADS)

    Green, S. J.; Tamburello, N.; Miller, S. E.; Akins, J. L.; Côté, I. M.

    2013-06-01

    A standard approach to improving the accuracy of reef fish population estimates derived from underwater visual censuses (UVCs) is the application of species-specific correction factors, which assumes that a species' detectability is constant under all conditions. To test this assumption, we quantified detection rates for invasive Indo-Pacific lionfish ( Pterois volitans and P. miles), which are now a primary threat to coral reef conservation throughout the Caribbean. Estimates of lionfish population density and distribution, which are essential for managing the invasion, are currently obtained through standard UVCs. Using two conventional UVC methods, the belt transect and stationary visual census (SVC), we assessed how lionfish detection rates vary with lionfish body size and habitat complexity (measured as rugosity) on invaded continuous and patch reefs off Cape Eleuthera, the Bahamas. Belt transect and SVC surveys performed equally poorly, with both methods failing to detect the presence of lionfish in >50 % of surveys where thorough, lionfish-focussed searches yielded one or more individuals. Conventional methods underestimated lionfish biomass by ~200 %. Crucially, detection rate varied significantly with both lionfish size and reef rugosity, indicating that the application of a single correction factor across habitats and stages of invasion is unlikely to accurately characterize local populations. Applying variable correction factors that account for site-specific lionfish size and rugosity to conventional survey data increased estimates of lionfish biomass, but these remained significantly lower than actual biomass. To increase the accuracy and reliability of estimates of lionfish density and distribution, monitoring programs should use detailed area searches rather than standard visual survey methods. Our study highlights the importance of accounting for sources of spatial and temporal variation in detection to increase the accuracy of survey data from

  1. Alien Roadside Species More Easily Invade Alpine than Lowland Plant Communities in a Subarctic Mountain Ecosystem

    PubMed Central

    Lembrechts, Jonas J.; Milbau, Ann; Nijs, Ivan

    2014-01-01

    Effects of roads on plant communities are not well known in cold-climate mountain ecosystems, where road building and development are expected to increase in future decades. Knowledge of the sensitivity of mountain plant communities to disturbance by roads is however important for future conservation purposes. We investigate the effects of roads on species richness and composition, including the plant strategies that are most affected, along three elevational gradients in a subarctic mountain ecosystem. We also examine whether mountain roads promote the introduction and invasion of alien plant species from the lowlands to the alpine zone. Observations of plant community composition were made together with abiotic, biotic and anthropogenic factors in 60 T-shaped transects. Alpine plant communities reacted differently to road disturbances than their lowland counterparts. On high elevations, the roadside species composition was more similar to that of the local natural communities. Less competitive and ruderal species were present at high compared with lower elevation roadsides. While the effects of roads thus seem to be mitigated in the alpine environment for plant species in general, mountain plant communities are more invasible than lowland communities. More precisely, relatively more alien species present in the roadside were found to invade into the surrounding natural community at high compared to low elevations. We conclude that effects of roads and introduction of alien species in lowlands cannot simply be extrapolated to the alpine and subarctic environment. PMID:24586947

  2. Exotic species as modifiers of ecosystem processes: Litter decomposition in native and invaded secondary forests of NW Argentina

    NASA Astrophysics Data System (ADS)

    Aragón, Roxana; Montti, Lia; Ayup, María Marta; Fernández, Romina

    2014-01-01

    Invasions of exotic tree species can cause profound changes in community composition and structure, and may even cause legacy effect on nutrient cycling via litter production. In this study, we compared leaf litter decomposition of two invasive exotic trees (Ligustrum lucidum and Morus sp.) and two dominant native trees (Cinnamomum porphyria and Cupania vernalis) in native and invaded (Ligustrum-dominated) forest stands in NW Argentina. We measured leaf attributes and environmental characteristics in invaded and native stands to isolate the effects of litter quality and habitat characteristics. Species differed in their decomposition rates and, as predicted by the different species colonization status (pioneer vs. late successional), exotic species decayed more rapidly than native ones. Invasion by L. lucidum modified environmental attributes by reducing soil humidity. Decomposition constants (k) tended to be slightly lower (-5%) for all species in invaded stands. High SLA, low tensile strength, and low C:N of Morus sp. distinguish this species from the native ones and explain its higher decomposition rate. Contrary to our expectations, L. lucidum leaf attributes were similar to those of native species. Decomposition rates also differed between the two exotic species (35% higher in Morus sp.), presumably due to leaf attributes and colonization status. Given the high decomposition rate of L. lucidum litter (more than 6 times that of natives) we expect an acceleration of nutrient circulation at ecosystem level in Ligustrum-dominated stands. This may occur in spite of the modified environmental conditions that are associated with L. lucidum invasion.

  3. Fish introductions reveal the temperature dependence of species interactions.

    PubMed

    Hein, Catherine L; Öhlund, Gunnar; Englund, Göran

    2014-01-22

    A major area of current research is to understand how climate change will impact species interactions and ultimately biodiversity. A variety of environmental conditions are rapidly changing owing to climate warming, and these conditions often affect both the strength and outcome of species interactions. We used fish distributions and replicated fish introductions to investigate environmental conditions influencing the coexistence of two fishes in Swedish lakes: brown trout (Salmo trutta) and pike (Esox lucius). A logistic regression model of brown trout and pike coexistence showed that these species coexist in large lakes (more than 4.5 km(2)), but not in small, warm lakes (annual air temperature more than 0.9-1.5°C). We then explored how climate change will alter coexistence by substituting climate scenarios for 2091-2100 into our model. The model predicts that brown trout will be extirpated from approximately half of the lakes where they presently coexist with pike and from nearly all 9100 lakes where pike are predicted to invade. Context dependency was critical for understanding pike-brown trout interactions, and, given the widespread occurrence of context-dependent species interactions, this aspect will probably be critical for accurately predicting climate impacts on biodiversity. PMID:24307673

  4. Fish introductions reveal the temperature dependence of species interactions

    PubMed Central

    Hein, Catherine L.; Öhlund, Gunnar; Englund, Göran

    2014-01-01

    A major area of current research is to understand how climate change will impact species interactions and ultimately biodiversity. A variety of environmental conditions are rapidly changing owing to climate warming, and these conditions often affect both the strength and outcome of species interactions. We used fish distributions and replicated fish introductions to investigate environmental conditions influencing the coexistence of two fishes in Swedish lakes: brown trout (Salmo trutta) and pike (Esox lucius). A logistic regression model of brown trout and pike coexistence showed that these species coexist in large lakes (more than 4.5 km2), but not in small, warm lakes (annual air temperature more than 0.9–1.5°C). We then explored how climate change will alter coexistence by substituting climate scenarios for 2091–2100 into our model. The model predicts that brown trout will be extirpated from approximately half of the lakes where they presently coexist with pike and from nearly all 9100 lakes where pike are predicted to invade. Context dependency was critical for understanding pike–brown trout interactions, and, given the widespread occurrence of context-dependent species interactions, this aspect will probably be critical for accurately predicting climate impacts on biodiversity. PMID:24307673

  5. Virulence of oomycete pathogens from Phragmites australis-invaded and noninvaded soils to seedlings of wetland plant species

    PubMed Central

    Crocker, Ellen V; Karp, Mary Ann; Nelson, Eric B

    2015-01-01

    Soil pathogens affect plant community structure and function through negative plant–soil feedbacks that may contribute to the invasiveness of non-native plant species. Our understanding of these pathogen-induced soil feedbacks has relied largely on observations of the collective impact of the soil biota on plant populations, with few observations of accompanying changes in populations of specific soil pathogens and their impacts on invasive and noninvasive species. As a result, the roles of specific soil pathogens in plant invasions remain unknown. In this study, we examine the diversity and virulence of soil oomycete pathogens in freshwater wetland soils invaded by non-native Phragmites australis (European common reed) to better understand the potential for soil pathogen communities to impact a range of native and non-native species and influence invasiveness. We isolated oomycetes from four sites over a 2-year period, collecting nearly 500 isolates belonging to 36 different species. These sites were dominated by species of Pythium, many of which decreased seedling survival of a range of native and invasive plants. Despite any clear host specialization, many of the Pythium species were differentially virulent to the native and non-native plant species tested. Isolates from invaded and noninvaded soils were equally virulent to given individual plant species, and no apparent differences in susceptibility were observed between the collective groups of native and non-native plant species. PMID:26078850

  6. Development of static system procedures to study aquatic biofilms and their responses to disinfection and invading species

    NASA Technical Reports Server (NTRS)

    Smithers, G. A.

    1992-01-01

    The microbial ecology facility in the Analytical and Physical Chemistry Branch at Marshall Space Flight Center is tasked with anticipation of potential microbial problems (and opportunities to exploit microorganisms) which may occur in partially closed systems such as space station/vehicles habitats and in water reclamation systems therein, with particular emphasis on the degradation of materials. Within this context, procedures for microbial biofilm research are being developed. Reported here is the development of static system procedures to study aquatic biofilms and their responses to disinfection and invading species. Preliminary investigations have been completed. As procedures are refined, it will be possible to focus more closely on the elucidation of biofilm phenomena.

  7. A global assessment of invasive plant impacts on resident species, communities and ecosystems: the interaction of impact measures, invading species' traits and environment

    PubMed Central

    Pyšek, Petr; Jarošík, Vojtěch; Hulme, Philip E; Pergl, Jan; Hejda, Martin; Schaffner, Urs; Vilà, Montserrat

    2012-01-01

    With the growing body of literature assessing the impact of invasive alien plants on resident species and ecosystems, a comprehensive assessment of the relationship between invasive species traits and environmental settings of invasion on the characteristics of impacts is needed. Based on 287 publications with 1551 individual cases that addressed the impact of 167 invasive plant species belonging to 49 families, we present the first global overview of frequencies of significant and non-significant ecological impacts and their directions on 15 outcomes related to the responses of resident populations, species, communities and ecosystems. Species and community outcomes tend to decline following invasions, especially those for plants, but the abundance and richness of the soil biota, as well as concentrations of soil nutrients and water, more often increase than decrease following invasion. Data mining tools revealed that invasive plants exert consistent significant impacts on some outcomes (survival of resident biota, activity of resident animals, resident community productivity, mineral and nutrient content in plant tissues, and fire frequency and intensity), whereas for outcomes at the community level, such as species richness, diversity and soil resources, the significance of impacts is determined by interactions between species traits and the biome invaded. The latter outcomes are most likely to be impacted by annual grasses, and by wind pollinated trees invading mediterranean or tropical biomes. One of the clearest signals in this analysis is that invasive plants are far more likely to cause significant impacts on resident plant and animal richness on islands rather than mainland. This study shows that there is no universal measure of impact and the pattern observed depends on the ecological measure examined. Although impact is strongly context dependent, some species traits, especially life form, stature and pollination syndrome, may provide a means to predict

  8. NATIVE FRESHWATER FISH AND MUSSEL SPECIES RICHNESS

    EPA Science Inventory

    These data represent predicted current distributions of all native freshwater fish and freshwater mussels in the Middle-Atlantic region. The data are available for both 8-digit HUCs and EMAP hexagons and represent total species counts for each spatial unit.

  9. PREDICTIONS IN AN INVADED WORLD - PART I: USING NICHE MODELS TO PREDICT DISTRIBUTIONS OF MARINE/ESTUARINE SPECIES AT THE HABITAT SCALE

    EPA Science Inventory

    Niche models can be used to predict the distributions of marine/estuarine nonindigenous species (NIS) over three spatial scales. The goal at the biogeographic scale is to predict whether a species is likely to invade a geographic region. At the regional scale, the goal is to pr...

  10. Knocking on Heaven's Door: Are Novel Invaders Necessarily Facing Naïve Native Species on Islands?

    PubMed

    Gérard, Agathe; Jourdan, Hervé; Millon, Alexandre; Vidal, Eric

    2016-01-01

    The impact of alien predator species on insular native biota has often been attributed to island prey naïveté (i.e. lack of, or inefficient, anti-predator behavior). Only rarely, however, has the concept of island prey naïveté been tested, and then only a posteriori (i.e. hundreds or thousands of years after alien species introduction). The presence of native or anciently introduced predators or competitors may be crucial for the recognition and development of adaptive behavior toward unknown predators or competitors of the same archetype (i.e. a set of species that occupy a similar ecological niche and show similar morphological and behavioral traits when interacting with other species). Here, we tested whether two squamates endemic to New Caledonia, a skink, Caledoniscincus austrocaledonicus, and a gecko, Bavayia septuiclavis, recognized and responded to the odor of two major invaders introduced into the Pacific islands, but not yet into New Caledonia. We chose one predator, the small Indian mongoose Herpestes javanicus and one competitor, the cane toad Rhinella marina, which belong respectively to the same archetype as the following two species already introduced into New Caledonia in the nineteenth century: the feral cat Felis catus and the golden bell frog Litoria aurea. Our experiment reveals that geckos are naïve with respect to the odors of both an unknown predator and an unknown competitor, as well as to the odors of a predator and a competitor they have lived with for centuries. In contrast, skinks seem to have lost some naïveté regarding the odor of a predator they have lived with for centuries and seem "predisposed" to avoid the odor of an unknown potential competitor. These results indicate that insular species living in contact with invasive alien species for centuries may be, although not systematically, predisposed toward developing adaptive behavior with respect to species belonging to the same archetype and introduced into their native

  11. Effects of resource availability and propagule supply on native species recruitment in sagebrush ecosystems invaded by Bromus tectorum

    USGS Publications Warehouse

    Mazzola, Monica B.; Chambers, Jeanne C.; Blank, Robert R.; Pyke, David A.; Schupp, Eugene W.; Allcock, Kimberly G.; Doescher, Paul S.; Nowak, Robert S.

    2011-01-01

    Resource availability and propagule supply are major factors influencing establishment and persistence of both native and invasive species. Increased soil nitrogen (N) availability and high propagule inputs contribute to the ability of annual invasive grasses to dominate disturbed ecosystems. Nitrogen reduction through carbon (C) additions can potentially immobilize soil N and reduce the competitiveness of annual invasive grasses. Native perennial species are more tolerant of resource limiting conditions and may benefit if N reduction decreases the competitive advantage of annual invaders and if sufficient propagules are available for their establishment. Bromus tectorum, an exotic annual grass in the sagebrush steppe of western North America, is rapidly displacing native plant species and causing widespread changes in ecosystem processes. We tested whether nitrogen reduction would negatively affect B. tectorum while creating an opportunity for establishment of native perennial species. A C source, sucrose, was added to the soil, and then plots were seeded with different densities of both B. tectorum (0, 150, 300, 600, and 1,200 viable seeds m-2) and native species (0, 150, 300, and 600 viable seeds m-2). Adding sucrose had short-term (1 year) negative effects on available nitrogen and B. tectorum density, biomass and seed numbers, but did not increase establishment of native species. Increasing propagule availability increased both B. tectorum and native species establishment. Effects of B. tectorum on native species were density dependent and native establishment increased as B. tectorum propagule availability decreased. Survival of native seedlings was low indicating that recruitment is governed by the seedling stage.

  12. Stress tolerance and ecophysiological ability of an invader and a native species in a seasonally dry tropical forest.

    PubMed

    Oliveira, Marciel Teixeira; Matzek, Virginia; Dias Medeiros, Camila; Rivas, Rebeca; Falcão, Hiram Marinho; Santos, Mauro Guida

    2014-01-01

    Ecophysiological traits of Prosopis juliflora (Sw.) DC. and a phylogenetically and ecologically similar native species, Anadenanthera colubrina (Vell.) Brenan, were studied to understand the invasive species' success in caatinga, a seasonally dry tropical forest ecosystem of the Brazilian Northeast. To determine if the invader exhibited a superior resource-capture or a resource-conservative strategy, we measured biophysical and biochemical parameters in both species during dry and wet months over the course of two years. The results show that P. juliflora benefits from a flexible strategy in which it frequently outperforms the native species in resource capture traits under favorable conditions (e.g., photosynthesis), while also showing better stress tolerance (e.g., antioxidant activity) and water-use efficiency in unfavorable conditions. In addition, across both seasons the invasive has the advantage over the native with higher chlorophyll/carotenoids and chlorophyll a/b ratios, percent N, and leaf protein. We conclude that Prosopis juliflora utilizes light, water and nutrients more efficiently than Anadenanthera colubrina, and suffers lower intensity oxidative stress in environments with reduced water availability and high light radiation. PMID:25137048

  13. Count Your Eggs Before They Invade: Identifying and Quantifying Egg Clutches of Two Invasive Apple Snail Species (Pomacea)

    PubMed Central

    Kyle, Colin H.; Plantz, Allyson L.; Shelton, Therese; Burks, Romi L.

    2013-01-01

    Winning the war against invasive species requires early detection of invasions. Compared to terrestrial invaders, aquatic species often thrive undetected under water and do not garner notice until too late for early action. However, fortunately for managers, apple snails (Family Ampullariidae, Genus Pomacea) provide their own conspicuous sign of invasion in the form of vibrantly colored egg clutches. Managers can potentially use egg clutches laid in the riparian zone as a means of early detection and species identification. To facilitate such efforts, we quantified differences in characteristics (length, width, depth, mass, egg number) of field-laid clutches for the two most common invasive species of apple snail, P. canaliculata and P. maculata, in native and non-native populations. Pomacea canaliculata native and non-native populations differed noticeably only in width. Native P. maculata clutches possessed significantly greater width, mass and eggs numbers compared with native P. canaliculata. Non-native P. maculata clutches significantly exceeded all other populations in all measured characteristics. Consequently, these traits may successfully distinguish between species. Fecundity data also allowed us to develop models that accurately estimated the number of eggs per clutch for each species based on clutch dimensions. We tested one, two and three dimensional models of clutches, including rendering a clutch as either a complete ellipsoid or an ellipsoid intersected by a cylinder to represent the oviposition site. Model comparisons found the product of length and depth, with a different function for each population, best predicted egg number for both species. Comparisons of egg number to clutch volume and mass implied non-native P. canaliculata may be food limited, while non-native P. maculata appeared to produce such enormous clutches by having access to greater nutrients than the native population. With these new tools, researchers and managers can quickly

  14. Allelopathic effect of a native species on a major plant invader in Europe.

    PubMed

    Christina, Mathias; Rouifed, Soraya; Puijalon, Sara; Vallier, Félix; Meiffren, Guillaume; Bellvert, Floriant; Piola, Florence

    2015-04-01

    Biological invasions have become a major global issue in ecosystem conservation. As formalized in the "novel weapon hypothesis", the allelopathic abilities of species are actively involved in invasion success. Here, we assume that allelopathy can also increase the biotic resistance of native species against invasion. We tested this hypothesis by studying the impact of the native species Sambucus ebulus on the colonization of propagules of the invasive species Fallopiaxbohemica and the subsequent development of plants from these. Achenes and rhizome fragments from two natural populations were grown in a greenhouse experiment for 50 days. We used an experimental design that involved "donor" and "target" pots in order to separate resource competition from allelopathy. An allelopathic treatment effect was observed for plant growth but not for propagule establishment. Treatment affected, in particular, the growth of Fallopia plants originating from achenes, but there was less influence on plants originating from rhizomes. By day 50, shoot height had decreased by 27% for plants originating from rhizomes and by 38% for plants originating from achenes. The number of leaves for plants originating from achenes had only decreased by 20%. Leaf and above- and below-ground dry masses decreased with treatment by 40, 41 and 25% for plants originating from rhizomes and 70, 61 and 55% for plants originating from achenes, respectively. S. ebulus extracts were analysed using high-performance chromatography, and the choice of test molecules was narrowed down. Our results suggest native species use allelopathy as a biotic containment mechanism against the naturalization of invasive species. PMID:25740225

  15. Allelopathic effect of a native species on a major plant invader in Europe

    NASA Astrophysics Data System (ADS)

    Christina, Mathias; Rouifed, Soraya; Puijalon, Sara; Vallier, Félix; Meiffren, Guillaume; Bellvert, Floriant; Piola, Florence

    2015-04-01

    Biological invasions have become a major global issue in ecosystem conservation. As formalized in the "novel weapon hypothesis", the allelopathic abilities of species are actively involved in invasion success. Here, we assume that allelopathy can also increase the biotic resistance of native species against invasion. We tested this hypothesis by studying the impact of the native species Sambucus ebulus on the colonization of propagules of the invasive species Fallopia x bohemica and the subsequent development of plants from these. Achenes and rhizome fragments from two natural populations were grown in a greenhouse experiment for 50 days. We used an experimental design that involved "donor" and "target" pots in order to separate resource competition from allelopathy. An allelopathic treatment effect was observed for plant growth but not for propagule establishment. Treatment affected, in particular, the growth of Fallopia plants originating from achenes, but there was less influence on plants originating from rhizomes. By day 50, shoot height had decreased by 27 % for plants originating from rhizomes and by 38 % for plants originating from achenes. The number of leaves for plants originating from achenes had only decreased by 20 %. Leaf and above- and below-ground dry masses decreased with treatment by 40, 41 and 25 % for plants originating from rhizomes and 70, 61 and 55 % for plants originating from achenes, respectively. S. ebulus extracts were analysed using high-performance chromatography, and the choice of test molecules was narrowed down. Our results suggest native species use allelopathy as a biotic containment mechanism against the naturalization of invasive species.

  16. Hardy exotics species in temperate zone: can "warm water" crayfish invaders establish regardless of low temperatures?

    PubMed

    Veselý, Lukáš; Buřič, Miloš; Kouba, Antonín

    2015-01-01

    The spreading of new crayfish species poses a serious risk for freshwater ecosystems; because they are omnivores they influence more than one level in the trophic chain and they represent a significant part of the benthic biomass. Both the environmental change through global warming and the expansion of the pet trade increase the possibilities of their spreading. We investigated the potential of four "warm water" highly invasive crayfish species to overwinter in the temperate zone, so as to predict whether these species pose a risk for European freshwaters. We used 15 specimens of each of the following species: the red swamp crayfish (Procambarus clarkii), the marbled crayfish (Procambarus fallax f. virginalis), the yabby (Cherax destructor), and the redclaw (Cherax quadricarinatus). Specimens were acclimatized and kept for 6.5 months at temperatures simulating the winter temperature regime of European temperate zone lentic ecosystems. We conclude that the red swamp crayfish, marbled crayfish and yabby have the ability to withstand low winter temperatures relevant for lentic habitats in the European temperate zone, making them a serious invasive threat to freshwater ecosystems. PMID:26572317

  17. Stress Tolerance and Ecophysiological Ability of an Invader and a Native Species in a Seasonally Dry Tropical Forest

    PubMed Central

    Teixeira Oliveira, Marciel; Matzek, Virginia; Dias Medeiros, Camila; Rivas, Rebeca; Marinho Falcão, Hiram; Santos, Mauro Guida

    2014-01-01

    Ecophysiological traits of Prosopis juliflora (Sw.) DC. and a phylogenetically and ecologically similar native species, Anadenanthera colubrina (Vell.) Brenan, were studied to understand the invasive species’ success in caatinga, a seasonally dry tropical forest ecosystem of the Brazilian Northeast. To determine if the invader exhibited a superior resource-capture or a resource-conservative strategy, we measured biophysical and biochemical parameters in both species during dry and wet months over the course of two years. The results show that P. juliflora benefits from a flexible strategy in which it frequently outperforms the native species in resource capture traits under favorable conditions (e.g., photosynthesis), while also showing better stress tolerance (e.g., antioxidant activity) and water-use efficiency in unfavorable conditions. In addition, across both seasons the invasive has the advantage over the native with higher chlorophyll/carotenoids and chlorophyll a/b ratios, percent N, and leaf protein. We conclude that Prosopis juliflora utilizes light, water and nutrients more efficiently than Anadenanthera colubrina, and suffers lower intensity oxidative stress in environments with reduced water availability and high light radiation. PMID:25137048

  18. An eDNA Assay to Monitor a Globally Invasive Fish Species from Flowing Freshwater.

    PubMed

    Adrian-Kalchhauser, Irene; Burkhardt-Holm, Patricia

    2016-01-01

    Ponto-Caspian gobies are a flock of five invasive fish species that have colonized freshwaters and brackish waters in Europe and North America. One of them, the round goby Neogobius melanostomus, figures among the 100 worst invaders in Europe. Current methods to detect the presence of Ponto-Caspian gobies involve catching or sighting the fish. These approaches are labor intense and not very sensitive. Consequently, populations are usually detected only when they have reached high densities and when management or containment efforts are futile. To improve monitoring, we developed an assay based on the detection of DNA traces (environmental DNA, or eDNA) of Ponto-Caspian gobies in river water. The assay specifically detects invasive goby DNA and does not react to any native fish species. We apply the assay to environmental samples and demonstrate that parameters such as sampling depth, sampling location, extraction protocol, PCR protocol and PCR inhibition greatly impact detection. We further successfully outline the invasion front of Ponto-Caspian gobies in a large river, the High Rhine in Switzerland, and thus demonstrate the applicability of the assay to lotic environments. The eDNA assay requires less time, equipment, manpower, skills, and financial resources than the conventional monitoring methods such as electrofishing, angling or diving. Samples can be taken by untrained individuals, and the assay can be performed by any molecular biologist on a conventional PCR machine. Therefore, this assay enables environment managers to map invaded areas independently of fishermen's' reports and fish community monitorings. PMID:26814998

  19. Invader or resident? Ancient-DNA reveals rapid species turnover in New Zealand little penguins.

    PubMed

    Grosser, Stefanie; Rawlence, Nicolas J; Anderson, Christian N K; Smith, Ian W G; Scofield, R Paul; Waters, Jonathan M

    2016-02-10

    The expansion of humans into previously unoccupied parts of the globe is thought to have driven the decline and extinction of numerous vertebrate species. In New Zealand, human settlement in the late thirteenth century AD led to the rapid demise of a distinctive vertebrate fauna, and also a number of 'turnover' events where extinct lineages were subsequently replaced by closely related taxa. The recent genetic detection of an Australian little penguin (Eudyptula novaehollandiae) in southeastern New Zealand may potentially represent an additional 'cryptic' invasion. Here we use ancient-DNA (aDNA) analysis and radiocarbon dating of pre-human, archaeological and historical Eudyptula remains to reveal that the arrival of E. novaehollandiae in New Zealand probably occurred between AD 1500 and 1900, following the anthropogenic decline of its sister taxon, the endemic Eudyptula minor. This rapid turnover event, revealed by aDNA, suggests that native species decline can be masked by invasive taxa, and highlights the potential for human-mediated biodiversity shifts. PMID:26842575

  20. Knocking on Heaven's Door: Are Novel Invaders Necessarily Facing Naïve Native Species on Islands?

    PubMed Central

    Gérard, Agathe; Jourdan, Hervé; Millon, Alexandre; Vidal, Eric

    2016-01-01

    The impact of alien predator species on insular native biota has often been attributed to island prey naïveté (i.e. lack of, or inefficient, anti-predator behavior). Only rarely, however, has the concept of island prey naïveté been tested, and then only a posteriori (i.e. hundreds or thousands of years after alien species introduction). The presence of native or anciently introduced predators or competitors may be crucial for the recognition and development of adaptive behavior toward unknown predators or competitors of the same archetype (i.e. a set of species that occupy a similar ecological niche and show similar morphological and behavioral traits when interacting with other species). Here, we tested whether two squamates endemic to New Caledonia, a skink, Caledoniscincus austrocaledonicus, and a gecko, Bavayia septuiclavis, recognized and responded to the odor of two major invaders introduced into the Pacific islands, but not yet into New Caledonia. We chose one predator, the small Indian mongoose Herpestes javanicus and one competitor, the cane toad Rhinella marina, which belong respectively to the same archetype as the following two species already introduced into New Caledonia in the nineteenth century: the feral cat Felis catus and the golden bell frog Litoria aurea. Our experiment reveals that geckos are naïve with respect to the odors of both an unknown predator and an unknown competitor, as well as to the odors of a predator and a competitor they have lived with for centuries. In contrast, skinks seem to have lost some naïveté regarding the odor of a predator they have lived with for centuries and seem “predisposed” to avoid the odor of an unknown potential competitor. These results indicate that insular species living in contact with invasive alien species for centuries may be, although not systematically, predisposed toward developing adaptive behavior with respect to species belonging to the same archetype and introduced into their native

  1. ABC transporters in fish species: a review

    PubMed Central

    Ferreira, Marta; Costa, Joana; Reis-Henriques, Maria A.

    2014-01-01

    ATP-binding cassette (ABC) proteins were first recognized for their role in multidrug resistance (MDR) in chemotherapeutic treatments, which is a major impediment for the successful treatment of many forms of malignant tumors in humans. These proteins, highly conserved throughout vertebrate species, were later related to cellular detoxification and accounted as responsible for protecting aquatic organisms from xenobiotic insults in the so-called multixenobiotic resistance mechanism (MXR). In recent years, research on these proteins in aquatic species has highlighted their importance in the detoxification mechanisms in fish thus it is necessary to continue these studies. Several transporters have been pointed out as relevant in the ecotoxicological context associated to the transport of xenobiotics, such as P-glycoproteins (Pgps), multidrug-resistance-associated proteins (MRPs 1-5) and breast cancer resistance associated protein (BCRP). In mammals, several nuclear receptors have been identified as mediators of phase I and II metabolizing enzymes and ABC transporters. In aquatic species, knowledge on co-regulation of the detoxification mechanism is scarce and needs to be addressed. The interaction of emergent contaminants that can act as chemosensitizers, with ABC transporters in aquatic organisms can compromise detoxification processes and have population effects and should be studied in more detail. This review intends to summarize the recent advances in research on MXR mechanisms in fish species, focusing in (1) regulation and functioning of ABC proteins; (2) cooperation with phase I and II biotransformation enzymes; and (3) ecotoxicological relevance and information on emergent pollutants with ability to modulate ABC transporters expression and activity. Several lines of evidence are clearly suggesting the important role of these transporters in detoxification mechanisms and must be further investigated in fish to underlay the mechanism to consider their use as

  2. Phylogeny of Fish-Infecting Calyptospora species (Apicomplexa: Eimeriorina)

    EPA Science Inventory

    There are numerous species of apicomplexans that infect poikilothermic vertebrates such as fishes, and possess unique morphological features that provide insight into the evolution of this important phylum of parasites. Here the relationship of the fish-infecting Calyptospora spe...

  3. DNA barcode-based molecular identification system for fish species.

    PubMed

    Kim, Sungmin; Eo, Hae-Seok; Koo, Hyeyoung; Choi, Jun-Kil; Kim, Won

    2010-12-01

    In this study, we applied DNA barcoding to identify species using short DNA sequence analysis. We examined the utility of DNA barcoding by identifying 53 Korean freshwater fish species, 233 other freshwater fish species, and 1339 saltwater fish species. We successfully developed a web-based molecular identification system for fish (MISF) using a profile hidden Markov model. MISF facilitates efficient and reliable species identification, overcoming the limitations of conventional taxonomic approaches. MISF is freely accessible at http://bioinfosys.snu.ac.kr:8080/MISF/misf.jsp . PMID:21110132

  4. Persistence and extirpation in invaded landscapes: patch characteristics and connectivity determine effects of non-native predatory fish on native salamanders

    USGS Publications Warehouse

    Pilliod, David S.; Arkle, Robert S.; Maxell, Bryce A.

    2012-01-01

    Studies have demonstrated negative effects of non-native, predatory fishes on native amphibians, yet it is still unclear why some amphibian populations persist, while others are extirpated, following fish invasion. We examined this question by developing habitat-based occupancy models for the long-toed salamander (Ambystoma macrodactylum) and nonnative fish using survey data from 1,749 water bodies across 470 catchments in the Northern Rocky Mountains, USA. We first modeled the habitat associations of salamanders at 468 fishless water bodies in 154 catchments where non-native fish were historically, and are currently, absent from the entire catchment. Wethen applied this habitat model to the complete data set to predict the probability of salamander occupancy in each water body, removing any effect of fish presence. Finally, we compared field-observed occurrences of salamanders and fish to modeled probability of salamander occupancy. Suitability models indicated that fish and salamanders had similar habitat preferences, possibly resulting in extirpations of salamander populations from entire catchments where suitable habitats were limiting. Salamanders coexisted with non-native fish in some catchments by using marginal quality, isolated (no inlet or outlet) habitats that remained fishless. They rarely coexisted with fish within individual water bodies and only where habitat quality was highest. Connectivity of water bodies via streams resulted in increased probability of fish invasion and consequently reduced probability of salamander occupancy.These results could be used to identify and prioritize catchments and water bodies where control measures would be most effective at restoring amphibian populations. Our approach could be useful as a framework for improved investigations into questions of persistence and extirpation of native species when non-native species have already become established.

  5. 50 CFR Table 2c to Part 679 - Species Codes: FMP Forage Fish Species (all species of the following families)

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Species Codes: FMP Forage Fish Species (all species of the following families) 2c Table 2c to Part 679 Wildlife and Fisheries FISHERY...: FMP Forage Fish Species (all species of the following families) Species Description Code...

  6. 50 CFR Table 2c to Part 679 - Species Codes: FMP Forage Fish Species (all species of the following families)

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Species Codes: FMP Forage Fish Species (all species of the following families) 2c Table 2c to Part 679 Wildlife and Fisheries FISHERY...: FMP Forage Fish Species (all species of the following families) Species Description Code...

  7. Tissue specific metal characterization of selected fish species in Pakistan.

    PubMed

    Ahmed, Mukhtiar; Ahmad, Taufiq; Liaquat, Muhammad; Abbasi, Kashif Sarfraz; Farid, Ibrahim Bayoumi Abdel; Jahangir, Muhammad

    2016-04-01

    Concentration of various metals, i.e., zinc (Zn), copper (Cu), lead (Pb), nickel (Ni), iron (Fe), manganese (Mn), chromium (Cr), and silver (Ag), was evaluated in five indigenous fish species (namely, silver carp, common carp, mahseer, thela fish, and rainbow trout), by using atomic absorption spectrophotometer. It is proved from this study that, overall, mahseer and rainbow trout had high amount of zinc, whereas thela fish and silver carp had high concentration of copper, chromium, silver, nickel, and lead, while common carp had highest amount of iron contents. Furthermore, a tissue-specific discrimination among various fish species was observed, where higher metal concentrations were noticed in fish liver, with decreasing concentration in other organs like skin, gills, and finally the least contents in fish muscle. Multivariate data analysis showed not only a variation in heavy metals among the tissues but also discrimination among the selected fish species. PMID:26951449

  8. SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK FOR ENDANGERED FISHES

    EPA Science Inventory

    Rainbow trout, fathead minnows, and sheepshead minnows were tested as surrogate species to assess contaminant risk for 17 endangered fishes and one toad species. Acute toxicity tests were conducted with carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin in accord...

  9. An eDNA Assay to Monitor a Globally Invasive Fish Species from Flowing Freshwater

    PubMed Central

    Adrian-Kalchhauser, Irene; Burkhardt-Holm, Patricia

    2016-01-01

    Ponto-Caspian gobies are a flock of five invasive fish species that have colonized freshwaters and brackish waters in Europe and North America. One of them, the round goby Neogobius melanostomus, figures among the 100 worst invaders in Europe. Current methods to detect the presence of Ponto-Caspian gobies involve catching or sighting the fish. These approaches are labor intense and not very sensitive. Consequently, populations are usually detected only when they have reached high densities and when management or containment efforts are futile. To improve monitoring, we developed an assay based on the detection of DNA traces (environmental DNA, or eDNA) of Ponto-Caspian gobies in river water. The assay specifically detects invasive goby DNA and does not react to any native fish species. We apply the assay to environmental samples and demonstrate that parameters such as sampling depth, sampling location, extraction protocol, PCR protocol and PCR inhibition greatly impact detection. We further successfully outline the invasion front of Ponto-Caspian gobies in a large river, the High Rhine in Switzerland, and thus demonstrate the applicability of the assay to lotic environments. The eDNA assay requires less time, equipment, manpower, skills, and financial resources than the conventional monitoring methods such as electrofishing, angling or diving. Samples can be taken by untrained individuals, and the assay can be performed by any molecular biologist on a conventional PCR machine. Therefore, this assay enables environment managers to map invaded areas independently of fishermen’s’ reports and fish community monitorings. PMID:26814998

  10. From richer to poorer: successful invasion by freshwater fishes depends on species richness of donor and recipient basins.

    PubMed

    Fitzgerald, Daniel B; Tobler, Michael; Winemiller, Kirk O

    2016-07-01

    Evidence for the theory of biotic resistance is equivocal, with experiments often finding a negative relationship between invasion success and native species richness, and large-scale comparative studies finding a positive relationship. Biotic resistance derives from local species interactions, yet global and regional studies often analyze data at coarse spatial grains. In addition, differences in competitive environments across regions may confound tests of biotic resistance based solely on native species richness of the invaded community. Using global and regional data sets for fishes in river and stream reaches, we ask two questions: (1) does a negative relationship exist between native and non-native species richness and (2) do non-native species originate from higher diversity systems. A negative relationship between native and non-native species richness in local assemblages was found at the global scale, while regional patterns revealed the opposite trend. At both spatial scales, however, nearly all non-native species originated from river basins with higher native species richness than the basin of the invaded community. Together, these findings imply that coevolved ecological interactions in species-rich systems inhibit establishment of generalist non-native species from less diverse communities. Consideration of both the ecological and evolutionary aspects of community assembly is critical to understanding invasion patterns. Distinct evolutionary histories in different regions strongly influence invasion of intact communities that are relatively unimpacted by human actions, and may explain the conflicting relationship between native and non-native species richness found at different spatial scales. PMID:26582547

  11. Parasite fauna of selected fish species of Lake Miedwie.

    PubMed

    Sobecka, Ewa; Piasecki, Wojciech

    2002-01-01

    A total of 136 fishes, representing 9 species (perch, Perca fluviatilis L.; pike, Esox lucius L.; European eel, Anguilla anguilla (L.); common bream, Abramis brama (L.); roach, Rutilus rutilus (L.); tench Tinca tinca (L.); European whitefish, Coregonus lavaretus (L.); vendace, Coregonus albula (L.); and zander, Sander lucioperca (L.)), from Lake Miedwie were studied within 1997-1999. The necropsies yielded 41 parasite species (taxa). The most diversified were parasite faunas of pike (19 parasite species) and perch (16 species). The parasites found represented 13 higher taxa: Monera, Fungi, Protista, Myxozoa, Monogenea, Cestoda, Digenea, Nematoda, Acanthocephala, Branchiura, Copepoda, Mollusca, and Acarina. The parasites affecting fishes of Lake Miedwie exhibited diversified host-specificity. The most fish species were infected by metacercariae of Diplostomum spp. (8 fish species) and Tylodelphys clavata (7). Three fish species harboured: Ichthyocotylurus platycephalus, Ergasilus sieboldi, and glochidia Unionidae gen. sp. while Dermocystidium sp., Trichodinella epizootica, Henneguya psorospermica, Triaenophorus nodulosus, Posthodiplostomum cuticula, and Camallanus lacustris parasitised two host species. The remaining parasites were found in single fish species. PMID:16888943

  12. Comparative ecology of exotic invaders and ecologically equivalent species of hydrobionths in the Great Lakes of the world: Results of Russia-USA cooperation

    USGS Publications Warehouse

    Pronin, N.M.; Fleischer, G.W.; Kohl, S. G.; Korsunov, V. M.; Baldanova, D.R.; Bronte, C.R.; Garmayeva, C. H.; Hatcher, C. H.; Hoff, M.H.; Maistrenko, S.G.; Nester, R.; O'Gorman, Robert; Owens, R.W.; Pronina, S.V.; Selgeby, J.H.; Sokolnikov, Yury; Todd, N. T.

    1999-01-01

    This paper presents brief fragments of the results of joint Russia-US research conducted through the cooperative project entitled, 'Comparative ecology of exotic invaders and ecologically equivalent species of hydrobionths in the Great Lakes of the world: Lake Baikal and the Laurentian Great Lakes.' The project was executed under the Agreement on Scientific Cooperation between the Institute of General and Experimental Biology (formerly Buryat Institute of Biology) of the Siberian Branch of the Russian Academy of Sciences and the Great Lakes Science Center of the U.S. Geological Survey.

  13. Oral vaccination of fish: Lessons from humans and veterinary species.

    PubMed

    Embregts, Carmen W E; Forlenza, Maria

    2016-11-01

    The limited number of oral vaccines currently approved for use in humans and veterinary species clearly illustrates that development of efficacious and safe oral vaccines has been a challenge not only for fish immunologists. The insufficient efficacy of oral vaccines is partly due to antigen breakdown in the harsh gastric environment, but also to the high tolerogenic gut environment and to inadequate vaccine design. In this review we discuss current approaches used to develop oral vaccines for mass vaccination of farmed fish species. Furthermore, using various examples from the human and veterinary vaccine development, we propose additional approaches to fish vaccine design also considering recent advances in fish mucosal immunology and novel molecular tools. Finally, we discuss the pros and cons of using the zebrafish as a pre-screening animal model to potentially speed up vaccine design and testing for aquaculture fish species. PMID:27018298

  14. Classification of species attributes for Pacific Northwest freshwater fishes

    USGS Publications Warehouse

    Zaroban, D.W.; Mulvey, M.P.; Maret, T.R.; Hughes, R.M.; Merritt, G.D.

    1999-01-01

    Fish assemblages integrate physical and chemical habitat conditions and are used to evaluate the condition of water resources in the Pacific Northwest. To facilitate such evaluations, we classified each of the 132 freshwater fish species known to occur in the Pacific Northwest (Idaho, Oregon, Washington) by its origin, overall pollution tolerance, adult habitat, adult feeding, and water temperature preference. Recommendations from regional fishery experts, published literature, and the aggregate experience of the authors were used to classify species. The attribute classifications were responsive to human disturbance of aquatic habitats when applied to fish assemblages sampled from throughout the region. Our attribute classification of fish species promotes use of fish assemblages to evaluate water resource conditions regionally and fosters greater acceptance of biological measures of water resource quality.

  15. Modeling of Valued Fish Species in River Networks

    EPA Science Inventory

    Riverine fish provide many ecosystem services in support of human well-being, including food, recreation, and biodiversity. Under future drivers of land use and climate change, inland waters are likely to be impaired, and conservation and protection of fish species and services ...

  16. Isotopic and geochemical characterization of invader tilapia fishes from water bodies of West Bengal and Karnataka, India.

    PubMed

    Chatterjee, Mousumi; Ghosh, Prosenjit; Ramdas, Leena; Chakrabarti, Ramananda

    2015-11-01

    The otoliths (N = 12) of freshwater invasive species tilapia (Tilapia mossambicus) collected from two water bodies located at Kolkata and Bangalore, India, were analyzed for stable isotopes (δ18O, δ14C) and major and trace elements in order to assess the suitability of using otoliths as a tracer of aquatic environmental changes. The stable isotope analysis was done using the dual inlet system of a Finnigan-MAT 253 isotope ratio mass spectrometer (Thermo-Fisher, Bremen, Germany). Concentrations of major and trace elements were determined using a Thermo X-Series II quadrupole mass spectrometer. The stable isotope composition in tilapia otolith samples from Bangalore and Kolkata water bodies are quite good agreeing with that of the respective lake/pond and rain water. Elemental composition revealed in a pattern of Ca>Fe>Na>Sr>K>Ba>Cr>Mg>As>Mn>Zn>Co>Cu>Cd>Pb. The otoliths from Kolkata pond water are more enriched in Ba, Zn, Pb, Mn, Se, Cu, Zn, Cd, and Ni whereas Cr and As were found to be higher in otolith samples from Bangalore lake. The enrichment factor (EF) values of Cr were higher for both the sampling location in comparison with other metals, although all the studied metals exhibited EF values>1. The PCA shows clustering of metals in the otolith which are related either with the metabolic and physiological attributes or waterborne source. The study demonstrated the potential of stable isotope techniques to distinguish otolith specimens from varied climatic zone, while elemental composition recorded the quality of water at both the locations. The role of climate driving the quality of water can be understood by detailed and continuous monitoring of otolith specimens in the future. Future method allows reconstruction of climate and water quality from old specimens from field exposures or museum collection. PMID:26511853

  17. Methylmercury concentrations in six fish species from two Colombian rivers.

    PubMed

    Alvarez, Santiago; Jessick, Ashley M; Palacio, Jaime A; Kolok, Alan S

    2012-01-01

    The objective of this study was to determine whether fish collected from the La Miel or Nechí Rivers (Colombia) differed in muscle methyl mercury (meHg) concentration. Two fish from six different species were collected from markets adjacent to each river. Overall, fish collected from the market adjacent to the Nechí River contained higher levels of meHg. This result however is being driven by very high meHg concentrations in four individual fish, three of which are Pimelodid, long-whiskered catfish. These catfish may represent ideal sentinel organism for the detection of meHg contamination in Colombian rivers. PMID:22065125

  18. Development of solar drying model for selected Cambodian fish species.

    PubMed

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6 °C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg · h(-1). Based on coefficient of determination (R(2)), chi-square (χ(2)) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing. PMID:25250381

  19. Development of Solar Drying Model for Selected Cambodian Fish Species

    PubMed Central

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6°C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg·h−1. Based on coefficient of determination (R2), chi-square (χ2) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing. PMID:25250381

  20. Beyond the zebrafish: diverse fish species for modeling human disease

    PubMed Central

    Schartl, Manfred

    2014-01-01

    ABSTRACT In recent years, zebrafish, and to a lesser extent medaka, have become widely used small animal models for human diseases. These organisms have convincingly demonstrated the usefulness of fish for improving our understanding of the molecular and cellular mechanisms leading to pathological conditions, and for the development of new diagnostic and therapeutic tools. Despite the usefulness of zebrafish and medaka in the investigation of a wide spectrum of traits, there is evidence to suggest that other fish species could be better suited for more targeted questions. With the emergence of new, improved sequencing technologies that enable genomic resources to be generated with increasing efficiency and speed, the potential of non-mainstream fish species as disease models can now be explored. A key feature of these fish species is that the pathological condition that they model is often related to specific evolutionary adaptations. By exploring these adaptations, new disease-causing and disease-modifier genes might be identified; thus, diverse fish species could be exploited to better understand the complexity of disease processes. In addition, non-mainstream fish models could allow us to study the impact of environmental factors, as well as genetic variation, on complex disease phenotypes. This Review will discuss the opportunities that such fish models offer for current and future biomedical research. PMID:24271780

  1. Status of heavy metal residues in fish species of Pakistan.

    PubMed

    Hussain, Majid; Muhammad, Said; Malik, Riffat N; Khan, Muhammad U; Farooq, Umar

    2014-01-01

    In this review, we evaluate and summarize the available data that addresses the levels of HM that exist in aquatic species, mainly fish, of Pakistan. Data on this topic were collected from the literature of the last two decades (1990-2012). Results revealed that the highest number (>50%) of studies addressing HM-contaminated fish have occurred in the Punjab province, followed by the Sindh and Khyber Pakhtunkhwa provinces. Our review disclosed that the HM concentrations in Pakistani fish species varied considerably with location. Generally, the level of HM residues detected in fish species had the following descending order: Fe>Zn>Pb>Cd>Hg>Ni>Cu>Ag>Cr>Mn>As. Fish samples collected from the Kabul River near the Nowshera district, Stretch of Ravi River, Indus River near Mainwali district, and Arabian Sea at Karachi revealed extremely high HM concentrations (range: 0.34-8,381.30 jlg/g), compared to other fresh water bodies, such as the Llyold Barrage, Guddu Barrage, Jinnah Barrage, and Chashma Barrage (0.01-2.13 jlg/g). As a reference point, we also reviewed selected data on HM fish residues that exist in countries that neighbor Pakistan. With the exception of fish collected in India, the majority of fish analyzed for HM residues in neighboring countries displayed lower residues than did fish from Pakistan. We concluded from reviewing the available published data that the most probable sources for the HM contaminants found in Pakistani water and fish were release of domestic sewage, agricultural runoff, and industrial effluents. We strongly recommend that action be taken to better control the discharges of unregulated waste that enters the Pakistani aquatic environment, with the intent to mitigate any continuing future damage to the aquatic ecosystem. We also recommend intensifying research programs that address the toxicity of HM to the aquatic environment, so that a better understanding of metal effects on fish can be achieved that will lead to a sustainable

  2. Effects of Fishing and Regional Species Pool on the Functional Diversity of Fish Communities

    PubMed Central

    Martins, Gustavo M.; Arenas, Francisco; Neto, Ana I.; Jenkins, Stuart R.

    2012-01-01

    The potential population and community level impacts of fishing have received considerable attention, but little is known about how fishing influences communities’ functional diversity at regional scales. We examined how estimates of functional diversity differed among 25 regions of variable richness and investigated the functional consequences of removing species targeted by commercial fisheries. Our study shows that fishing leads to substantial losses in functional diversity. The magnitude of such loss was, however, reduced in the more speciose regions. Moreover, the removal of commercially targeted species caused a much larger reduction in functional diversity than expected by random species deletions, which was a consequence of the selective nature of fishing for particular species traits. Results suggest that functional redundancy is spatially variable, that richer biotas provide some degree of insurance against the impact of fishing on communities’ functional diversity and that fishing predominantly selects for particular species traits. Understanding how fishing impacts community functional diversity is key to predict its effects for biodiversity as well as ecosystem functioning. PMID:22952950

  3. Effects of fishing and regional species pool on the functional diversity of fish communities.

    PubMed

    Martins, Gustavo M; Arenas, Francisco; Neto, Ana I; Jenkins, Stuart R

    2012-01-01

    The potential population and community level impacts of fishing have received considerable attention, but little is known about how fishing influences communities' functional diversity at regional scales. We examined how estimates of functional diversity differed among 25 regions of variable richness and investigated the functional consequences of removing species targeted by commercial fisheries. Our study shows that fishing leads to substantial losses in functional diversity. The magnitude of such loss was, however, reduced in the more speciose regions. Moreover, the removal of commercially targeted species caused a much larger reduction in functional diversity than expected by random species deletions, which was a consequence of the selective nature of fishing for particular species traits. Results suggest that functional redundancy is spatially variable, that richer biotas provide some degree of insurance against the impact of fishing on communities' functional diversity and that fishing predominantly selects for particular species traits. Understanding how fishing impacts community functional diversity is key to predict its effects for biodiversity as well as ecosystem functioning. PMID:22952950

  4. Aggregation and species coexistence of ectoparasites of marine fishes.

    PubMed

    Morand, S; Poulin, R; Rohde, K; Hayward, C

    1999-05-01

    Interspecific interaction may lead to species exclusion but there are several ways in which species can coexist. One way is by reducing the overall intensity of competition via aggregated utilisation of fragmented resources. Known as the 'aggregation model of coexistence', this system assumes saturation and an equilibrium number of species per community. In this study we tested the effects of interspecific aggregation on the level of intraspecific aggregation among ectoparasites of marine fishes (36 communities of gill and head ectoparasite species). If parasite species are distributed in a way that interspecific aggregation is reduced relative to intraspecific aggregation then species coexistence is facilitated. We found a positive relationship between parasite species richness and fish body size, controlling for host phylogeny. A positive relationship between infracommunity species richness and total parasite species richness was also found, providing no evidence for saturation. This result supports the view that infracommunities of parasites are not saturated by local parasite residents. The observed lack of saturation implies that we are far from a full exploitation of the fish resource by parasites. Ectoparasites were aggregated at both population and species levels. However, only half of the ectoparasite communities were dominated by negative interspecific aggregation. We found that infracommunity parasite species richness was positively correlated with the level of intraspecific aggregation versus interspecific aggregation. This means that intraspecific aggregation increases compared with interspecific aggregation when total parasite species richness increases, controlling fish size and phylogeny. This supports one assumption of the 'aggregation model of coexistence', which predicts that interspecific interactions are reduced relative to intraspecific interactions, facilitating species coexistence. PMID:10404260

  5. Analysis of the parasitic copepod species richness among Mediterranean fish

    NASA Astrophysics Data System (ADS)

    Raibaut, André; Combes, Claude; Benoit, Françoise

    1998-06-01

    The Mediterranean ichthyofauna is composed of 652 species belonging to 405 genera and 117 families. Among these, 182 were studied for their parasitic copepods. The analysis of all the works conducted on these crustacea yielded 226 species distributed in 88 genera and 20 families. For each fish species we have established a file providing the species name of the fish, its family, its geographical distribution within the Mediterranean and some of its bio-ecological characteristics. Within each file, all the parasitic copepod species reported on each host species were listed. This allowed to know the species richness (SR) of these hosts. We thus produced 182 files within which 226 copepod species are distributed. A program was created under the Hypercard software, in order to analyse our data. Two parameters were studied. The first one is the mean species richness (MSR), which corresponds to the mean of the different SR found on the different host species. The second is the parasite-host ratio (P/H), which is the ratio of the number of copepod species by the number of host species. These parameters are calculated by our program for all the 182 species of Mediterranean fishes retained in our investigation, on the first hand, and, on the second hand, for one particular group of fish species. We used the following variables to investigate their correlations with copepod species richness: taxonomy—fish families, genera and species; biometry—maximal size of the adult fish; eco-ethology—mode of life (benthic, pelagic or nectonic), displacements (sedentary, migratory with environmental change, or migratory without environmental change), behaviour (solitary or gregarious). Other variables (colour, food, reproduction, abundance, distribution area) were also analysed but did not reveal any clear correlation. Providing that our study does not rely on quantitative (prevalence, intensity) but qualitative basis our aim was only to reveal some tendencies. These tendencies are

  6. [On the Features of Embryonic Cleavage in Diverse Fish Species].

    PubMed

    Desnitskiy, A G

    2015-01-01

    Literature on the earliest steps of fish embryogenesis (including a number of "non-model" species) has been considered. The main attention has been paid to the loss of cleavage division synchrony and the first latitudinal cleavage furrow. In teleostean embryos, the features of their meroblastic cleavage are not rigidly associated with egg size. The midblastula transition (in a form clearly enough) occurs in some chondrostean and teleostean fishes, but it has not been detected in the representatives of sarcopterygian and chondrichthyan fishes. PMID:26859966

  7. Genetic assessment of ornamental fish species from North East India.

    PubMed

    Dhar, Bishal; Ghosh, Sankar Kumar

    2015-01-25

    Ornamental fishes are traded with multiple names from various parts around the world, including North East India. Most are collected from the wild, due to lack of species-specific culture or breeding, and therefore, such unmanaged collection of the wild and endemic species could lead to severe threats to biodiversity. Despite many regulatory policies, trade of threatened species, including the IUCN listed species have been largely uncontrolled, due to species identification problems arising from the utilization of multiple trade names. So, the development of species-specific DNA marker is indispensable where DNA Barcoding is proved to be helpful in species identification. Here, we investigated, through DNA Barcoding and morphological assessment, the identification of 128 ornamental fish specimens exported from NE India from different exporters. The generated sequences were subjected to similarity match in BOLD-IDS as well as BLASTN, and analysed using MEGA5.2 for species identification through Neighbour-Joining (NJ) clustering, and K2P distance based approach. The analysis revealed straightforward identification of 84 specimens into 35 species, while 44 specimens were difficult to distinguish based on CO1 barcode alone. However, these cases were resolved through morphology, NJ and distanced based method and found to be belonging to 16 species. Among the 51 identified species, 14 species represented multiple trade names; 17 species belonged to threatened category. Species-level identification through DNA Barcoding along with traditional morphotaxonomy reflects its efficacy in regulating ornamental fish trade and therefore, appeals for their conservation in nature. The use of trade names rather than the zoological name created the passage for trafficking of the threatened species and demands immediate attention for sustaining wildlife conservation. PMID:25447914

  8. Trophic interactions between native and introduced fish species in a littoral fish community.

    PubMed

    Monroy, M; Maceda-Veiga, A; Caiola, N; De Sostoa, A

    2014-11-01

    The trophic interactions between 15 native and two introduced fish species, silverside Odontesthes bonariensis and rainbow trout Oncorhynchus mykiss, collected in a major fishery area at Lake Titicaca were explored by integrating traditional ecological knowledge and stable-isotope analyses (SIA). SIA suggested the existence of six trophic groups in this fish community based on δ(13)C and δ(15)N signatures. This was supported by ecological evidence illustrating marked spatial segregation between groups, but a similar trophic level for most of the native groups. Based on Bayesian ellipse analyses, niche overlap appeared to occur between small O. bonariensis (<90 mm) and benthopelagic native species (31.6%), and between the native pelagic killifish Orestias ispi and large O. bonariensis (39%) or O. mykiss (19.7%). In addition, Bayesian mixing models suggested that O. ispi and epipelagic species are likely to be the main prey items for the two introduced fish species. This study reveals a trophic link between native and introduced fish species, and demonstrates the utility of combining both SIA and traditional ecological knowledge to understand trophic relationships between fish species with similar feeding habits. PMID:25263642

  9. Effects of resource availability and propagule supply on native species recruitment in sagebrush ecosystems invaded by Bromus tectorum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Resource availability and propagule supply are major factors influencing establishment and persistence of both native and invasive species. Increased soil nitrogen availability and high propagule inputs contribute to the ability of annual invasive grasses to dominate disturbed ecosystems. Nitrogen r...

  10. Predictions for an invaded world: A strategy to predict the distribution of native and non-indigenous species at multiple scales

    USGS Publications Warehouse

    Reusser, D.A.; Lee, H., II

    2008-01-01

    Habitat models can be used to predict the distributions of marine and estuarine non-indigenous species (NIS) over several spatial scales. At an estuary scale, our goal is to predict the estuaries most likely to be invaded, but at a habitat scale, the goal is to predict the specific locations within an estuary that are most vulnerable to invasion. As an initial step in evaluating several habitat models, model performance for a suite of benthic species with reasonably well-known distributions on the Pacific coast of the US needs to be compared. We discuss the utility of non-parametric multiplicative regression (NPMR) for predicting habitat- and estuary-scale distributions of native and NIS. NPMR incorporates interactions among variables, allows qualitative and categorical variables, and utilizes data on absence as well as presence. Preliminary results indicate that NPMR generally performs well at both spatial scales and that distributions of NIS are predicted as well as those of native species. For most species, latitude was the single best predictor, although similar model performance could be obtained at both spatial scales with combinations of other habitat variables. Errors of commission were more frequent at a habitat scale, with omission and commission errors approximately equal at an estuary scale. ?? 2008 International Council for the Exploration of the Sea. Published by Oxford Journals. All rights reserved.

  11. Value-added products from underutilized fish species.

    PubMed

    Venugopal, V; Shahidi, F

    1995-09-01

    Fish is a rich source of easily digestible protein that also provides polyunsaturated fatty acids, vitamins, and minerals for human nutrition. Nonetheless, a large proportion of total landed fish remains unused due to inherent problems related to unattractive color, flavor, texture, small size, and high fat content. Most of these underutilized fish belong to the abundantly available pelagic species, which are landed as bycatch, and some are unconventional species such as krill. Although some species are used industrially for fish meal manufacture, a need for their conservation and utilization for human consumption has been recognized in order to prevent post-harvest fishery losses. Recovery of flesh by mechanical deboning and development of value-added products are probably the most promising approaches. This article discusses various possibilities for product development using mince from low-cost fishery resources. These include surimi and surimi-based products, sausages, fermented products, protein concentrates and hydrolysates, extruded products, and biotechnological possibilities. The dual advantages of this approach, namely, finding ways for better utilization of low-value fish species and providing protein- rich convenience foods, have been pointed out. However, the key to the success of this approach depends largely on the market strategies utilized. PMID:8573282

  12. Glacial History of a Modern Invader: Phylogeography and Species Distribution Modelling of the Asian Tiger Mosquito Aedes albopictus

    PubMed Central

    Porretta, Daniele; Mastrantonio, Valentina; Bellini, Romeo; Somboon, Pradya; Urbanelli, Sandra

    2012-01-01

    Background The tiger mosquito, Aedes albopictus, is one of the 100 most invasive species in the world and a vector of human diseases. In the last 30 years, it has spread from its native range in East Asia to Africa, Europe, and the Americas. Although this modern invasion has been the focus of many studies, the history of the species’ native populations remains poorly understood. Here, we aimed to assess the role of Pleistocene climatic changes in shaping the current distribution of the species in its native range. Methodology/Principal Findings We investigated the phylogeography, historical demography, and species distribution of Ae. albopictus native populations at the Last Glacial Maximum (LGM). Individuals from 16 localities from East Asia were analyzed for sequence variation at two mitochondrial genes. No phylogeographic structure was observed across the study area. Demographic analyses showed a signature of population expansion that started roughly 70,000 years BP. The occurrence of a continuous and climatically suitable area comprising Southeast China, Indochinese Peninsula, and Sundaland during LGM was indicated by species distribution modelling. Conclusions/Significance Our results suggest an evolutionary scenario in which, during the last glacial phase, Ae. albopictus did not experience a fragmentation phase but rather persisted in interconnected populations and experienced demographic growth. The wide ecological flexibility of the species probably played a crucial role in its response to glacial-induced environmental changes. Currently, there is little information on the impact of Pleistocene climatic changes on animal species in East Asia. Most of the studies focused on forest-associated species and suggested cycles of glacial fragmentation and post-glacial expansion. The case of Ae. albopictus, which exhibits a pattern not previously observed in the study area, adds an important piece to our understanding of the Pleistocene history of East Asian biota

  13. [Fatty acids in different edible fish species from Mexico].

    PubMed

    Castro González, María Isabel; Rodríguez, Ana Gabriela Maafs; Galindo Gómez, Carlos

    2013-12-01

    Different biotic and abiotic factors determine the fatty acid (FA) composition of fish tissues and organs. This information is useful for humans due to the fact that fish consumption is associated with health benefits. The aim of the present study was to identify the variation in the concentration of fatty acids, according to different factors, among ten edible marine fish species in Mexico, collected from June to December 2009 in the largest fish market in Mexico City: Euthynnus alletteratus, Sciaenops ocellatus, Bairdiella chrysoura, Sphyraena guachancho, Symphurus elongatus, Istiophorus platypterus, Ophichthus rex, Eugerres plumieri, Eucinostomus entomelas and Oreochromrnis mossambicus. Lipid content was gravimetrically quantified, the fatty acids were determined using a gas chromatograph and the results were statistically analyzed. Total lipid content ranged from 0.93 to 1.95 g/100 g in E. entomelas and O. urolepis hornorum, respectively. E. alletteratus, B. chrysoura, S. elongatus, I. platypterus, O. rex and E. plumieri presented the following order in FA concentration: Polyunsaturated FA (PUFA)>Saturated FA (SFA)>Monounsaturated FA (MUFA). S. ocellatus, S. guachancho and E. entomelas presented SFA>PUFA>MUFA; and only O. mossambicus presented SFA>MUFA>PUFA. O. mossambicus had the highest concentration (mg/100 g) of SFA (559.40) and MUFA (442.60), while B. chrysoura presented the highest content (mg/100 g) of PUFA (663.03), n-3 PUFA (514.03), EPA+DHA (506.10) and n-6 PUFA (145.80). Biotic and abiotic factors of the analyzed fish significantly influenced their FA concentration. Subtropical species presented 42.1% more EPA+DHA than tropical specie. Values presented here will vary according to the changes in the ecosystem and characteristics of each fish species, however the information generated in the present study is useful for improving fish consumption recommendations. PMID:24432548

  14. Accounting for Incomplete Species Detection in Fish Community Monitoring

    SciTech Connect

    McManamay, Ryan A; Orth, Dr. Donald J; Jager, Yetta

    2013-01-01

    Riverine fish assemblages are heterogeneous and very difficult to characterize with a one-size-fits-all approach to sampling. Furthermore, detecting changes in fish assemblages over time requires accounting for variation in sampling designs. We present a modeling approach that permits heterogeneous sampling by accounting for site and sampling covariates (including method) in a model-based framework for estimation (versus a sampling-based framework). We snorkeled during three surveys and electrofished during a single survey in suite of delineated habitats stratified by reach types. We developed single-species occupancy models to determine covariates influencing patch occupancy and species detection probabilities whereas community occupancy models estimated species richness in light of incomplete detections. For most species, information-theoretic criteria showed higher support for models that included patch size and reach as covariates of occupancy. In addition, models including patch size and sampling method as covariates of detection probabilities also had higher support. Detection probability estimates for snorkeling surveys were higher for larger non-benthic species whereas electrofishing was more effective at detecting smaller benthic species. The number of sites and sampling occasions required to accurately estimate occupancy varied among fish species. For rare benthic species, our results suggested that higher number of occasions, and especially the addition of electrofishing, may be required to improve detection probabilities and obtain accurate occupancy estimates. Community models suggested that richness was 41% higher than the number of species actually observed and the addition of an electrofishing survey increased estimated richness by 13%. These results can be useful to future fish assemblage monitoring efforts by informing sampling designs, such as site selection (e.g. stratifying based on patch size) and determining effort required (e.g. number of

  15. Two Invaders Instead of One: The True Identity of Species under the Name Ceracis cucullatus (Coleoptera: Ciidae)

    PubMed Central

    Antunes-Carvalho, Caio; Lopes-Andrade, Cristiano

    2013-01-01

    The Neotropical obligate fungivorous beetle Ceracis cucullatus (Mellié) has attracted attention of coleopterists due to the increasing number of records of populations in Africa. Although its disjunct populations have been interpreted as a cohesive taxonomic unity, previous comparisons between African and Neotropical specimens revealed differences in their external morphology, causing uncertainty about the true unity of the species. Here, we compare the external morphology of specimens named Cer. cucullatus from several localities of the Neotropical, Palearctic, Afrotropical, Afrotemperate and Oriental regions. As results, we reverse three previous junior synonymies of Cer. cucullatus, proposing Cer. lamellatus (Pic) and Cer. tabellifer (Mellié), both reinstated status and new combinations, as separate species. We also propose Enn. bilamellatum Pic as a new synonym of Cer. tabellifer. In face of these taxonomic changes, we identify Cer. tabellifer as the actual invasive species on African lands, instead of Cer. cucullatus as was previously accepted. Then, through historical records gathered from scientific collections and literature, and through examination of recently collected specimens from South Africa and Brazil, we provide data on host fungi and geographic distribution of Cer. tabellifer. Based on these data, we discuss possible explanations to the successful invasion of Cer. tabellifer in Africa and elsewhere and its potential threat to native faunas of ciids. This study helps to fulfil an old gap in the literature on biological invasions, with considerably more studies on predatory species, disease vectors or potential pests of agricultural crops, than on non-pest fungivorous organisms. PMID:24015233

  16. Hardy exotics species in temperate zone: can “warm water” crayfish invaders establish regardless of low temperatures?

    PubMed Central

    Veselý, Lukáš; Buřič, Miloš; Kouba, Antonín

    2015-01-01

    The spreading of new crayfish species poses a serious risk for freshwater ecosystems; because they are omnivores they influence more than one level in the trophic chain and they represent a significant part of the benthic biomass. Both the environmental change through global warming and the expansion of the pet trade increase the possibilities of their spreading. We investigated the potential of four “warm water” highly invasive crayfish species to overwinter in the temperate zone, so as to predict whether these species pose a risk for European freshwaters. We used 15 specimens of each of the following species: the red swamp crayfish (Procambarus clarkii), the marbled crayfish (Procambarus fallax f. virginalis), the yabby (Cherax destructor), and the redclaw (Cherax quadricarinatus). Specimens were acclimatized and kept for 6.5 months at temperatures simulating the winter temperature regime of European temperate zone lentic ecosystems. We conclude that the red swamp crayfish, marbled crayfish and yabby have the ability to withstand low winter temperatures relevant for lentic habitats in the European temperate zone, making them a serious invasive threat to freshwater ecosystems. PMID:26572317

  17. Some organochlorine pesticide residues in fish species in Konya, Turkey.

    PubMed

    Kalyoncu, Leyla; Agca, Ihsan; Aktumsek, Abdurrahman

    2009-02-01

    The levels of organochlorine pesticides were measured in 18 fish species from Konya markets, Turkey. These species were selected on the basis of their importance to local human fish consumption. The extracted residues were analyzed on a micro capillary gas chromatograph equipped with an electron capture detector. Total 14 different organochlorine pesticides were determined. These residues were detected in all fish species, except in trout, horse mackerel and bonito. DDT and its metabolites and HCH were the predominant contaminants in fish muscles. The mean concentrations of summation operator DDT were in the range between 0.0008 and 0.0828 microg g(-1). DDT was the predominant residue in Sparus aurata. Detectable levels of HCH, aldrin, and heptachlor were found in most samples. However, dieldrin, endrin, beta endosulfan, p-p' DDT, and p-p' DDD were not found in Salmo trutta. The mean of endrin ranged from 0.0040 microg g(-1) (Triglia lineate) to 0.0326 microg g(-1) (Trachurus trachurus). These results give no indication of important health risks associated with the consumption of these fishes in Konya markets. PMID:19103455

  18. Fish and wildlife species as sentinels of environmental endocrine disruption

    USGS Publications Warehouse

    Sheffield, S.R.; Matter, J.M.; Rattner, B.A.; Guiney, P.D.

    1998-01-01

    This chapter provides an overview of the history and criteria for use of captive and free-ranging fish and wildlife (amphibians, reptiles, birds, and mammals) species as sentinels of potential environmental endocrine disruption. Biochemical, behavioral, physiological, immunological, genetic, reproductive, developmental, and ecological correlates of endocrine disruption in these sentinels are presented and reviewed. In addition, data needs to promote better use of sentinel species in the assessment of endocrine disruption are discussed.

  19. THREATENED AND ENDANGERED FRESHWATER FISH AND MUSSEL SPECIES RICHNESS

    EPA Science Inventory

    These data represent predicted current distributions of all US listed Threatened and Endangered freshwater fish and freshwater mussels in the Middle-Atlantic region. The data are available for both 8-digit HUCs and EMAP hexagons and represent total species counts for each spatia...

  20. Predicting Incursion of Plant Invaders into Kruger National Park, South Africa: The Interplay of General Drivers and Species-Specific Factors

    PubMed Central

    Jarošík, Vojtěch; Pyšek, Petr; Foxcroft, Llewellyn C.; Richardson, David M.; Rouget, Mathieu; MacFadyen, Sandra

    2011-01-01

    Background Overcoming boundaries is crucial for incursion of alien plant species and their successful naturalization and invasion within protected areas. Previous work showed that in Kruger National Park, South Africa, this process can be quantified and that factors determining the incursion of invasive species can be identified and predicted confidently. Here we explore the similarity between determinants of incursions identified by the general model based on a multispecies assemblage, and those identified by species-specific models. We analyzed the presence and absence of six invasive plant species in 1.0×1.5 km segments along the border of the park as a function of environmental characteristics from outside and inside the KNP boundary, using two data-mining techniques: classification trees and random forests. Principal Findings The occurrence of Ageratum houstonianum, Chromolaena odorata, Xanthium strumarium, Argemone ochroleuca, Opuntia stricta and Lantana camara can be reliably predicted based on landscape characteristics identified by the general multispecies model, namely water runoff from surrounding watersheds and road density in a 10 km radius. The presence of main rivers and species-specific combinations of vegetation types are reliable predictors from inside the park. Conclusions The predictors from the outside and inside of the park are complementary, and are approximately equally reliable for explaining the presence/absence of current invaders; those from the inside are, however, more reliable for predicting future invasions. Landscape characteristics determined as crucial predictors from outside the KNP serve as guidelines for management to enact proactive interventions to manipulate landscape features near the KNP to prevent further incursions. Predictors from the inside the KNP can be used reliably to identify high-risk areas to improve the cost-effectiveness of management, to locate invasive plants and target them for eradication. PMID:22194893

  1. Liquid chromatographic determination of oxytetracycline in edible fish fillets from six species of fish

    USGS Publications Warehouse

    Meinertz, J.R.; Stehly, G.R.; Gingerich, W.H.

    1998-01-01

    The approved use of oxytetracycline (OTC) in U.S. Aquaculture is limited to specific diseases in salmonids and channel catfish. OTC may also be effective in controlling diseases in other fish species important to public aquaculture, but before approved use of OTC can be augmented, an analytical method for determining OTC in fillet tissue from multiple species of fish will be required to support residue depletion studies. The objective of this study was to develop and validate a liquid chromatographic (LC) method that is accurate, precise, and sensitive for OTC in edible fillets from multiple species of fish. Homogenized fillet tissues from walleye, Atlantic salmon, striped bass, white sturgeon, rainbow trout, and channel catfish were fortified with OTC at nominal concentrations of 10, 20, 100, 1000, and 5000 ng/g. In tissues fortified with OTC at 100, 1000, and 5000 ng/g, mean recoveries ranged from 83 to 90%, and relative standard deviations (RSDs) ranged from 0.9 to 5.8%. In all other tissues, mean recoveries ranged from 59 to 98%, and RSDs ranged from 3.3 to 20%. Method quantitation limits ranged from 6 to 22 ng/g for the 6 species. The LC parameters produced easily integratable OTC peaks without coelution of endogenous compounds. The method is accurate, precise, and sensitive for OTC in fillet tissue from 6 species of fish from 5 phylogenetically diverse groups.

  2. Antispila oinophylla new species (Lepidoptera, Heliozelidae), a new North American grapevine leafminer invading Italian vineyards: taxonomy, DNA barcodes and life cycle.

    PubMed

    van Nieukerken, Erik J; Wagner, David L; Baldessari, Mario; Mazzon, Luca; Angeli, Gino; Girolami, Vicenzo; Duso, Carlo; Doorenweerd, Camiel

    2012-01-01

    A grapevine leafminer Antispila oinophylla van Nieukerken & Wagner, sp. n., is described both from eastern North America (type locality: Georgia) and as a new important invader in North Italian vineyards (Trentino and Veneto Region) since 2006. The species is closely related to, and previously confused with Antispila ampelopsifoliella Chambers, 1874, a species feeding on Virginia creeper Parthenocissus quinquefolia (L.) Planchon., and both are placed in an informal Antispila ampelopsifoliella group. Wing pattern, genitalia, and DNA barcode data all confirm the conspecificity of native North American populations and Italian populations. COI barcodes differ by only 0-1.23%, indicating that the Italian populations are recently established from eastern North America. The new species feeds on various wild Vitis species in North America, on cultivated Vitis vinifera L. in Italy, and also on Parthenocissus quinquefolia in Italy. North American Antispila feeding on Parthenocissus include at least two other species, one of which is Antispila ampelopsifoliella. Morphology and biology of the new species are contrasted with those of North American Antispila Hübner, 1825 species and European Holocacista rivillei (Stainton, 1855). The source population of the introduction is unknown, but cases with larvae or pupae, attached to imported plants, are a likely possibility. DNA barcodes of the three European grapevine leafminers and those of all examined Heliozelidae are highly diagnostic. North American Vitaceae-feeding Antispila form two species complexes and include several as yet unnamed taxa. The identity of three out of the four previously described North American Vitaceae-feeding species cannot be unequivocally determined without further revision, but these are held to be different from Antispila oinophylla. In Italy the biology of Antispila oinophylla was studied in a vineyard in the Trento Province (Trentino-Alto Adige Region) in 2008 and 2009. Mature larvae overwinter

  3. Antispila oinophylla new species (Lepidoptera, Heliozelidae), a new North American grapevine leafminer invading Italian vineyards: taxonomy, DNA barcodes and life cycle

    PubMed Central

    van Nieukerken, Erik J.; Wagner, David L.; Baldessari, Mario; Mazzon, Luca; Angeli, Gino; Girolami, Vicenzo; Duso, Carlo; Doorenweerd, Camiel

    2012-01-01

    Abstract A grapevine leafminer Antispila oinophylla van Nieukerken & Wagner, sp. n., is described both from eastern North America (type locality: Georgia) and as a new important invader in North Italian vineyards (Trentino and Veneto Region) since 2006. The species is closely related to, and previously confused with Antispila ampelopsifoliella Chambers, 1874, a species feeding on Virginia creeper Parthenocissus quinquefolia (L.) Planchon., and both are placed in an informal Antispila ampelopsifoliella group. Wing pattern, genitalia, and DNA barcode data all confirm the conspecificity of native North American populations and Italian populations. COI barcodes differ by only 0–1.23%, indicating that the Italian populations are recently established from eastern North America. The new species feeds on various wild Vitis species in North America, on cultivated Vitis vinifera L. in Italy, and also on Parthenocissus quinquefolia in Italy. North American Antispila feeding on Parthenocissus include at least two other species, one of which is Antispila ampelopsifoliella. Morphology and biology of the new species are contrasted with those of North American Antispila Hübner, 1825 species and European Holocacista rivillei (Stainton, 1855). The source population of the introduction is unknown, but cases with larvae or pupae, attached to imported plants, are a likely possibility. DNA barcodes of the three European grapevine leafminers and those of all examined Heliozelidae are highly diagnostic. North American Vitaceae-feeding Antispila form two species complexes and include several as yet unnamed taxa. The identity of three out of the four previously described North American Vitaceae-feeding species cannot be unequivocally determined without further revision, but these are held to be different from Antispila oinophylla. In Italy the biology of Antispila oinophylla was studied in a vineyard in the Trento Province (Trentino-Alto Adige Region) in 2008 and 2009. Mature larvae

  4. Four parasitic Crustacean species from marine fishes of Turkey.

    PubMed

    Oguz, Mehmet Cemal; Oktener, Ahmet

    2007-01-01

    The aim of this work was to present a preliminary knowledge of the parasitic copepods of marine fish of Turkey. In this study, four parasitic crustaceans were reported from five different fish species found in Turkish seas: Lepeophtheirus europaensis (Zeddam, Berrebi, Renaud, Raibaut & Gabrion, 1988) was found on the gills of the European flounder, Platichtys flesus (Linnaeus, 1758 (Pleuronectidae); Nerocila bivittata (Risso, 1816) on caudal peduncles of east Atlantic peacock wrasse, Symphodus tinca (Linnaeus, 1758) (Labridae); Ceratothoa oestroides (Risso, 1826), on the mouth base of European pilchard, Sardina pilchardus (Walbaum, 1792) (Clupeidae); Anilocra physodes (Linnaeus, 1758), on the body surface of gilthead seabreams, Sparus aurata Linnaeus, 1758 (Sparidae) and on horse mackerel, Trachurus trachurus (Linnaeus, 1758) (Carangidae). Also, a list of the parasitic copepods previously reported from marine fishes of Turkey since 1931 is given, with a new report of the host species, the localities where they were collected and the corresponding authors. At the present time, 23 parasitic copepods have been recorded from 25 host fish of Turkish coasts. Lepeophtheirus europaensis Zeddam, Berrebi, Renaud, Raibaut & Gabrion, 1988 was reported for the first time in Turkish coastal waters. PMID:17471420

  5. Characterization of antioxidant system parameters in four freshwater fish species.

    PubMed

    Atli, Gülüzar; Canli, Esin G; Eroglu, Ali; Canli, Mustafa

    2016-04-01

    The potential use of antioxidant system parameters has gained considerable interest due to their pivotal role of detoxification mechanisms in environmental studies and culture fish point of view. Fish with different ecological needs may have different antioxidant capacity and response to environmental contaminants. Thus, the optimal working conditions and specific enzyme activities (Vmax and Km) of antioxidant system parameters (Superoxide dismutase, SOD; Catalase, CAT; Glutathione peroxidase, GPX; Glutathione reductase, GR and Glutathione S-transferase, GST) and glutathione (GSH) were determined in four commonly cultured freshwater fish species (tilapia; Oreochromis niloticus, carp; Cyprinus carpio, trout; Onchorhynchus mykiss and catfish; Clarias garipienus). Data showed that optimal concentrations of different buffers, pH and specific chemicals for each enzyme and GSH were similar in most cases for all fish species, except a few differences. The highest Vmax and Km values were found in carp for GPX and GST, though these values were the highest in tilapia, catfish and trout for CAT, SOD and GR, respectively. As a conclusion, optimization assays of these parameters in different bioindicator organisms based on their physiological and ecological differences may be useful for the aquatic ecosystem biomonitoring studies and also present fundamental data for utilization in aquaculture. PMID:26707186

  6. Global patterns and predictors of fish species richness in estuaries.

    PubMed

    Vasconcelos, Rita P; Henriques, Sofia; França, Susana; Pasquaud, Stéphanie; Cardoso, Inês; Laborde, Marina; Cabral, Henrique N

    2015-09-01

    1. Knowledge of global patterns of biodiversity and regulating variables is indispensable to develop predictive models. 2. The present study used predictive modelling approaches to investigate hypotheses that explain the variation in fish species richness between estuaries over a worldwide spatial extent. Ultimately, such models will allow assessment of future changes in ecosystem structure and function as a result of environmental changes. 3. A comprehensive worldwide data base was compiled of the fish assemblage composition and environmental characteristics of estuaries. Generalized Linear Models were used to quantify how variation in species richness among estuaries is related to historical events, energy dynamics and ecosystem characteristics, while controlling for sampling effects. 4. At the global extent, species richness differed among marine biogeographic realms and continents and increased with mean sea surface temperature, terrestrial net primary productivity and the stability of connectivity with a marine ecosystem (open vs. temporarily open estuaries). At a smaller extent (within a marine biogeographic realm or continent), other characteristics were also important in predicting variation in species richness, with species richness increasing with estuary area and continental shelf width. 5. The results suggest that species richness in an estuary is defined by predictors that are spatially hierarchical. Over the largest spatial extents, species richness is influenced by the broader distributions and habitat use patterns of marine and freshwater species that can colonize estuaries, which are in turn governed by history contingency, energy dynamics and productivity variables. Species richness is also influenced by more regional and local parameters that can further affect the process of community colonization in an estuary including the connectivity of the estuary with the adjacent marine habitat, and, over smaller spatial extents, the size of these

  7. DISTRIBUTIONS OF LAKE FISHES OF THE NORTHEAST USA--III. SALMONIDAE AND ASSOCIATED COLDWATER SPECIES

    EPA Science Inventory

    We present distributional maps and discuss native status for fish species characteristic of coldwater lakes, sampled from 203 randomly selected lakes in the northeastern USA (New England, New York, New Jersey). Eleven coldwater fish species from four families (Salmonidae, Osmeri...

  8. Mineral Element Contents in Commercially Valuable Fish Species in Spain

    PubMed Central

    Peña-Rivas, Luis; Ortega, Eduardo; López-Martínez, Concepción; Olea-Serrano, Fátima; Lorenzo, Maria Luisa

    2014-01-01

    The aim of this study was to measure selected metal concentrations in Trachurus trachurus, Trachurus picturatus, and Trachurus mediterraneus, which are widely consumed in Spain. Principal component analysis suggested that the variable Cr was the main responsible variable for the identification of T. trachurus, the variables As and Sn for T. mediterraneus, and the rest of variables for T. picturatus. This well-defined discrimination between fish species provided by mineral element allows us to distinguish them on the basis of their metal content. Based on the samples collected, and recognizing the inferential limitation of the sample size of this study, the metal concentrations found are below the proposed limit values for human consumption. However, it should be taken into consideration that there are other dietary sources of these metals. In conclusion, metal contents in the fish species analyzed are acceptable for human consumption from a nutritional and toxicity point of view. PMID:24895678

  9. Predicting fish species distribution in estuaries: Influence of species' ecology in model accuracy

    NASA Astrophysics Data System (ADS)

    França, Susana; Cabral, Henrique N.

    2016-10-01

    Current threats to biodiversity, combined with limited data availability, have made for species distribution models (SDMs) to be increasingly used due to their ability to predict species' potential distribution, by relating species occurrence with environmental estimates. Often used in ecology, conservation biology and environmental management, SDMs have been informing conservation strategies, and thus it is becoming crucial to understand how trustworthy their predictions are. Uncertainty in model predictions is expected, but knowing the origin of prediction errors may help reducing it. Indeed, uncertainty may be related not only with data quality and the modelling algorithm used, but also with species ecological characteristics. To investigate whether the performance of SDM's may vary with species' ecological characteristics, distribution models for 21 fish species occurring in estuaries from the Portuguese coast were examined. These models were built at two distinct spatial resolutions and seven environmental explanatory variables were used as predictors. SDMs' accuracy was assessed with the area under the curve (AUC) of receiver operating characteristics (ROC) plots, sensitivity and specificity. Relationships between each measure of accuracy and species ecological characteristics were then examined. SDMs of the fish species presented small differences between the considered scales, and predictors as latitude, temperature and salinity were often selected at both scales. Measures of model accuracy presented differences between species and scales, but generally higher accuracy was obtained at smaller spatial scales. Among the ecological traits tested, species feeding mode and estuarine use functional groups were the most influential on the performance of distribution models. Habitat tolerance (number of habitat types frequented), species abundance, body size and spawning period also showed some effect. This analyses will contribute to distinguish, based on species

  10. INVADING AND METASTASIZING CARDIAC HEMANGIOENDOTHELIAL NEOPLASMS IN A COHORT OF THE FISH RIVULUS MARMORATUS: UNUSUALLY HIGH PREVALENCE, HISTOPATHOLOGY, AND POSSIBLE ETIOLOGIES

    EPA Science Inventory

    An unusually high, unprecedented prevalence of cardiac hemangioendotheliosarcomas (HES) and hemangioendotheliomas (HE) was found in a cohort of the small, teleost fish Rivulus marmoratus. he neoplasms occurred in 50/220 fish (22.7%) used in a carcinogenicity study of butyrated hy...

  11. Rapid isolation of microsatellite DNAs and identification of polymorphic mitochondrial DNA regions in the fish rotan (Perccottus glenii) invading European Russia

    USGS Publications Warehouse

    King, Timothy L.; Eackles, Michael S.; Reshetnikov, Andrey N.

    2015-01-01

    Human-mediated translocations and subsequent large-scale colonization by the invasive fish rotan (Perccottus glenii Dybowski, 1877; Perciformes, Odontobutidae), also known as Amur or Chinese sleeper, has resulted in dramatic transformations of small lentic ecosystems. However, no detailed genetic information exists on population structure, levels of effective movement, or relatedness among geographic populations of P. glenii within the European part of the range. We used massively parallel genomic DNA shotgun sequencing on the semiconductor-based Ion Torrent Personal Genome Machine (PGM) sequencing platform to identify nuclear microsatellite and mitochondrial DNA sequences in P. glenii from European Russia. Here we describe the characterization of nine nuclear microsatellite loci, ascertain levels of allelic diversity, heterozygosity, and demographic status of P. glenii collected from Ilev, Russia, one of several initial introduction points in European Russia. In addition, we mapped sequence reads to the complete P. glenii mitochondrial DNA sequence to identify polymorphic regions. Nuclear microsatellite markers developed for P. glenii yielded sufficient genetic diversity to: (1) produce unique multilocus genotypes; (2) elucidate structure among geographic populations; and (3) provide unique perspectives for analysis of population sizes and historical demographics. Among 4.9 million filtered P. glenii Ion Torrent PGM sequence reads, 11,304 mapped to the mitochondrial genome (NC_020350). This resulted in 100 % coverage of this genome to a mean coverage depth of 102X. A total of 130 variable sites were observed between the publicly available genome from China and the studied composite mitochondrial genome. Among these, 82 were diagnostic and monomorphic between the mitochondrial genomes and distributed among 15 genome regions. The polymorphic sites (N = 48) were distributed among 11 mitochondrial genome regions. Our results also indicate that sequence reads generated

  12. Ontogenetic variation in the body stoichiometry of two fish species.

    PubMed

    Boros, Gergely; Sály, Péter; Vanni, Michael J

    2015-10-01

    One of the central questions of ecological stoichiometry theory is to what extent animal species maintain constant elemental composition in their bodies. Although several recent studies demonstrate intraspecific variation in animal elemental composition, relatively little is known about ontogenetic changes in vertebrates, especially during early life stages. We studied the intraspecific and interspecific ontogenetic variation in the body stoichiometry of two fish species in two different orders; fathead minnow (Pimephales promelas) and sheepshead minnow (Cyprinodon variegatus), reared under controlled laboratory conditions. During ontogeny, we measured the chemical composition of fish bodies, including carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), and ribonucleic acid (RNA) contents. We found that N and RNA contents were relatively high in early life stages and declined substantially during development. In contrast, body C and C:N ratios were relatively low in embryos, post-embryos and larvae, and increased remarkably thereafter. Concentrations and ratios of some elements (e.g., Ca, P, Ca:P) did not exhibit consistent ontogenetic trends, but fluctuated dynamically between consecutive developmental stages in both species. Specific growth rates correlated significantly with RNA contents in both species. Analyses of the relative importance of different P pools at each developmental stage revealed that RNA was a considerable P pool in post-embryos, while bone-associated P was the dominant body P pool in later stages. Our results suggest that the elemental composition of fish bodies changes considerably during ontogeny. Each ontogenetic stage has its own stoichiometric signature, but the timing, magnitude and direction of ontogenetic changes can vary substantially between taxa. PMID:25999048

  13. Species-specific patterns of hyperostosis in marine teleost fishes

    USGS Publications Warehouse

    Smith-Vaniz, William F.; Kaufman, L.S.; Glowacki, J.

    1995-01-01

    The occurrence of swollen or hyperostotic bones in skeletal preparations, preserved museum material or whole fresh specimens of marine teleost fishes was identified in 92 species belonging to 22 families. Patterns of hyperostotic skeletal growth were typically consistent and often species-specific in all individuals larger than a certain size. The taxonomic distribution of hyperostosis in diverse phylogenetic groups suggests that it has arisen independently many times. Selected bones from two species of the family Carangidae, horse-eye jack Caranx latus Agassiz and crevalle jackCaranx hippos (Linnaeus), were examined in detail by light and electron microscopy. Nonhyperostotic bone contained osteoid-producing osteoblasts, resorbing osteoclasts, occasional osteocytes, and a rich vascular network, all characteristics of cellular bone. Thus, these fishes have a spatial juxtaposition of cellular and acellular bone tissues in adjacent and often serially homologous bone sites. The functional significance of hyperostosis is unknown, but it is a predictable manifestation of bone growth and development for the many taxa in which it occurs.

  14. 76 FR 14923 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-18

    ... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric.... seq) and regulations governing listed fish and wildlife permits (50 CFR parts 222-226). NMFS issues... groundfish species. The survey would collect data on 90+ fish species in the ocean to fulfill the mandates...

  15. Three unrecorded marine fish species from Korean waters

    NASA Astrophysics Data System (ADS)

    Park, Jeong-Ho; Kim, Jin Koo; Moon, Jee Hwan; Kim, Cheol Bum

    2007-12-01

    Three marine fish species are recorded for the first time from Korean waters: a molid (Ranzania laevis, 1 specimen, 279.8 mm SL) and bramid ( Pterycombus petersii, 3 specimens, 95.3-214.0 mm SL) collected from a large purse seine off Jeju Island, in the southern sea of Korea, and a carangid ( Carangoides dinema, 1 specimen, 194.5 mm SL) from a set net in coastal waters off Busan, in the southeastern sea of Korea. R. laevis is characterized by a wedge-shaped body and truncated clavus; P. petersii by the dorsal fin origin above or behind the posterior margin of eye, and dorsal and anal fins depressible; and C. dinema by a row of black blotches along the second dorsal fin base, the curved part of the lateral line longer than straight part, and 18 and 16 dorsal and anal fin rays, respectively. New Korean names are proposed for all three species.

  16. Target strengths of two abundant mesopelagic fish species.

    PubMed

    Scoulding, Ben; Chu, Dezhang; Ona, Egil; Fernandes, Paul G

    2015-02-01

    Mesopelagic fish of the Myctophidae and Sternoptychidae families dominate the biomass of the oceanic deep scattering layers and, therefore, have important ecological roles within these ecosystems. Interest in the commercial exploitation of these fish is growing, so the development of techniques for estimating their abundance, distribution and, ultimately, sustainable exploitation are essential. The acoustic backscattering characteristics for two size classes of Maurolicus muelleri and Benthosema glaciale are reported here based on swimbladder morphology derived from digitized soft x-ray images, and empirical (in situ) measurements of target strength (TS) derived from an acoustic survey in a Norwegian Sea. A backscattering model based on a gas-filled prolate spheroid was used to predict the theoretical TS for both species across a frequency range between 0 and 250 kHz. Sensitivity analyses of the TS model to the modeling parameters indicate that TS is rather sensitive to the viscosity, swimbladder volume ratio, and tilt, which can result in substantial changes to the TS. Theoretical TS predictions close to the resonance frequency were in good agreement (±2 dB) with mean in situ TS derived from the areas acoustically surveyed that were spatially and temporally consistent with the trawl information for both species. PMID:25698030

  17. Demographic modeling of selected fish species with RAMAS

    SciTech Connect

    Saila, S.; Martin, B.; Ferson, S.; Ginzburg, L.; Millstein, J. )

    1991-03-01

    The microcomputer program RAMAS 3 developed for EPRI, has been used to model the intrinsic natural variability of seven important fish species: cod, Atlantic herring, yellowtail flounder, haddock, striped bass, American shad and white perch. Demographic data used to construct age-based population models included information on spawning biology, longevity, sex ratio and (age-specific) mortality and fecundity. These data were collected from published and unpublished sources. The natural risks of extinction and of falling below threshold population abundances (quasi-extinction) are derived for each of the seven fish species based on measured and estimated values for their demographic parameters. The analysis of these species provides evidence that including density-dependent compensation in the demographic model typically lowers the expected chance of extinction. This is because if density dependence generally acts as a restoring force it seems reasonable to conclude that models which include density dependence would exhibit less fluctuation than models without compensation since density-dependent populations experience a pull towards equilibrium. Since extinction probabilities are determined by the size of the fluctuation of population abundance, models without density dependence will show higher risks of extinction, given identical circumstances. Thus, models without compensation can be used as conservative estimators of risk, that is, if a compensation-free model yields acceptable extinction risk, adding compensation will not increase this risk. Since it is usually difficult to estimate the parameters needed for a model with compensation, such conservative estimates of the risks of extinction based on a model without compensation are very useful in the methodology of impact assessment. 103 refs., 19 figs., 10 tabs.

  18. Patterns of benthic assemblages invaded and non-invaded by Grateloupia turuturu across rocky intertidal habitats

    NASA Astrophysics Data System (ADS)

    Freitas, Cristiano; Araújo, Rita; Bertocci, Iacopo

    2016-09-01

    Intertidal benthic assemblages invaded and non-invaded by the introduced Asian red alga Grateloupia turuturu were compared at a rocky shore along the NW coast of Portugal. The structure of whole assemblages, the total richness of taxa and the abundance of individual taxa were examined as response variables in two different habitats (rock pools and emergent rock), two shore levels (low and mid intertidal) and two dates of sampling (June 2013 and June 2014). Invaded and non-invaded assemblages differed consistently across habitats and shore levels. Such differences were driven by 13 (with the green alga genus Ulva, the red alga Chondrus crispus and the mussel Mytilus galloprovincialis driving the total dissimilarity) out of the total 37 taxa identified. Individual taxa revealed idiosyncratic patterns, in several cases (C. crispus, M. galloprovincialis, articulated coralline algae of the genus Corallina and the crustose sporophyte of the red alga Mastocarpus stellatus) there were differences in the abundance of a taxon between invaded and non-invaded assemblages varying with levels of some other experimental factors. The total number of taxa was higher in invaded compared to non-invaded assemblages for each combination of habitat and shore level. Patterns of invasion by G. turuturu along the Portuguese continental coast were recently described in terms of its temporal and spatial distribution, but never examined in terms of differences between invaded and non-invaded assemblages. Such information is very limited for other geographic areas where this species is recorded out of its native range of distribution. Therefore, the present study provides a new contribution to the understanding of modifications of native assemblages associated with the invasion of G. turuturu, opening avenues of research aimed at specifically examining the factors and processes likely responsible for the invasion dynamics and success of this species.

  19. Fish is Fish: the use of experimental model species to reveal causes of skeletal diversity in evolution and disease

    PubMed Central

    Harris, M. P.; Henke, K.; Hawkins, M. B.; Witten, P. E.

    2014-01-01

    Summary Fishes are wonderfully diverse. This variety is a result of the ability of ray-finned fishes to adapt to a wide range of environments, and has made them more specious than the rest of vertebrates combined. With such diversity it is easy to dismiss comparisons between distantly related fishes in efforts to understand the biology of a particular fish species. However, shared ancestry and the conservation of developmental mechanisms, morphological features and physiology provide the ability to use comparative analyses between different organisms to understand mechanisms of development and physiology. The use of species that are amenable to experimental investigation provides tools to approach questions that would not be feasible in other ‘non-model’ organisms. For example, the use of small teleost fishes such as zebrafish and medaka has been powerful for analysis of gene function and mechanisms of disease in humans, including skeletal diseases. However, use of these fish to aid in understanding variation and disease in other fishes has been largely unexplored. This is especially evident in aquaculture research. Here we highlight the utility of these small laboratory fishes to study genetic and developmental factors that underlie skeletal malformations that occur under farming conditions. We highlight several areas in which model species can serve as a resource for identifying the causes of variation in economically important fish species as well as to assess strategies to alleviate the expression of the variant phenotypes in farmed fish. We focus on genetic causes of skeletal deformities in the zebrafish and medaka that closely resemble phenotypes observed both in farmed as well as natural populations of fishes. PMID:25221374

  20. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  1. 78 FR 18273 - Draft Guidance for Industry on Purchasing Reef Fish Species Associated With the Hazard of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-26

    ... Reef Fish Species Associated With the Hazard of Ciguatera Fish Poisoning; Availability AGENCY: Food and...: Purchasing Reef Fish Species Associated With the Hazard of Ciguatera Fish Poisoning.'' The draft guidance, when finalized, will advise primary seafood processors who purchase reef fish how to minimize the...

  2. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  3. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  4. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  5. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  6. Pyrosequencing as a tool for rapid fish species identification and commercial fraud detection.

    PubMed

    De Battisti, Cristian; Marciano, Sabrina; Magnabosco, Cristian; Busato, Sara; Arcangeli, Giuseppe; Cattoli, Giovanni

    2014-01-01

    The increased consumption of fish products, as well as the occurrence of exotic fish species in the Mediterranean Sea and in the fish market, has increased the risk of commercial fraud. Furthermore, the great amount of processed seafood products has greatly limited the application of classic identification systems. DNA-based identification allows a clear and unambiguous detection of polymorphisms between species, permitting differentiation and identification of both commercial fraud and introduction of species with potential toxic effects on humans. In this study, a novel DNA-based approach for differentiation of fish species based on pyrosequencing technology has been developed. Raw and processed fish products were tested, and up to 25 species of fish belonging to Clupeiformes and Pleuronectiformes groups were uniquely and rapidly identified. The proper identification based on short and unique genetic sequence signatures demonstrates that this approach is promising and cost-effective for large-scale surveys. PMID:24350776

  7. Fish allergy in patients with parvalbumin-specific immunoglobulin E depends on parvalbumin content rather than molecular differences in the protein among fish species.

    PubMed

    Kobayashi, Ayako; Kobayashi, Yukihiro; Shiomi, Kazuo

    2016-10-01

    Allergenic characteristics of purified parvalbumins from different fish species have not been thoroughly investigated. We revealed that purified parvalbumins from nine different fish species have identical IgE-reactivities and high cross-reactivities. We also showed that fish allergenicity is associated with the parvalbumin content of the fish species, rather than species-specific differences in the molecular characteristics of the individual parvalbumin proteins. PMID:27251554

  8. 77 FR 23463 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-19

    ... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... Endangered Species Act section 10(a)(1)(A) permit to US Fish and Wildlife Service to collect Central Valley spring-run Chinook salmon eggs and juveniles from the Feather River Fish Hatchery to place into the...

  9. 76 FR 78242 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-16

    ... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... with section 10(a)(1)(A) of the ESA (16 U.S.C. 1531 et. seq) and regulations governing listed fish and... allow them to take all fish species covered in this notice while conducting research at Crims Island...

  10. Predicting future thermal habitat suitability of competing native and invasive fish species: from metabolic scope to oceanographic modelling

    PubMed Central

    Marras, Stefano; Cucco, Andrea; Antognarelli, Fabio; Azzurro, Ernesto; Milazzo, Marco; Bariche, Michel; Butenschön, Momme; Kay, Susan; Di Bitetto, Massimiliano; Quattrocchi, Giovanni; Sinerchia, Matteo; Domenici, Paolo

    2015-01-01

    Global increase in sea temperatures has been suggested to facilitate the incoming and spread of tropical invaders. The increasing success of these species may be related to their higher physiological performance compared with indigenous ones. Here, we determined the effect of temperature on the aerobic metabolic scope (MS) of two herbivorous fish species that occupy a similar ecological niche in the Mediterranean Sea: the native salema (Sarpa salpa) and the invasive marbled spinefoot (Siganus rivulatus). Our results demonstrate a large difference in the optimal temperature for aerobic scope between the salema (21.8°C) and the marbled spinefoot (29.1°C), highlighting the importance of temperature in determining the energy availability and, potentially, the distribution patterns of the two species. A modelling approach based on a present-day projection and a future scenario for oceanographic conditions was used to make predictions about the thermal habitat suitability (THS, an index based on the relationship between MS and temperature) of the two species, both at the basin level (the whole Mediterranean Sea) and at the regional level (the Sicilian Channel, a key area for the inflow of invasive species from the Eastern to the Western Mediterranean Sea). For the present-day projection, our basin-scale model shows higher THS of the marbled spinefoot than the salema in the Eastern compared with the Western Mediterranean Sea. However, by 2050, the THS of the marbled spinefoot is predicted to increase throughout the whole Mediterranean Sea, causing its westward expansion. Nevertheless, the regional-scale model suggests that the future thermal conditions of Western Sicily will remain relatively unsuitable for the invasive species and could act as a barrier for its spread westward. We suggest that metabolic scope can be used as a tool to evaluate the potential invasiveness of alien species and the resilience to global warming of native species. PMID:27293680

  11. Predicting future thermal habitat suitability of competing native and invasive fish species: from metabolic scope to oceanographic modelling.

    PubMed

    Marras, Stefano; Cucco, Andrea; Antognarelli, Fabio; Azzurro, Ernesto; Milazzo, Marco; Bariche, Michel; Butenschön, Momme; Kay, Susan; Di Bitetto, Massimiliano; Quattrocchi, Giovanni; Sinerchia, Matteo; Domenici, Paolo

    2015-01-01

    Global increase in sea temperatures has been suggested to facilitate the incoming and spread of tropical invaders. The increasing success of these species may be related to their higher physiological performance compared with indigenous ones. Here, we determined the effect of temperature on the aerobic metabolic scope (MS) of two herbivorous fish species that occupy a similar ecological niche in the Mediterranean Sea: the native salema (Sarpa salpa) and the invasive marbled spinefoot (Siganus rivulatus). Our results demonstrate a large difference in the optimal temperature for aerobic scope between the salema (21.8°C) and the marbled spinefoot (29.1°C), highlighting the importance of temperature in determining the energy availability and, potentially, the distribution patterns of the two species. A modelling approach based on a present-day projection and a future scenario for oceanographic conditions was used to make predictions about the thermal habitat suitability (THS, an index based on the relationship between MS and temperature) of the two species, both at the basin level (the whole Mediterranean Sea) and at the regional level (the Sicilian Channel, a key area for the inflow of invasive species from the Eastern to the Western Mediterranean Sea). For the present-day projection, our basin-scale model shows higher THS of the marbled spinefoot than the salema in the Eastern compared with the Western Mediterranean Sea. However, by 2050, the THS of the marbled spinefoot is predicted to increase throughout the whole Mediterranean Sea, causing its westward expansion. Nevertheless, the regional-scale model suggests that the future thermal conditions of Western Sicily will remain relatively unsuitable for the invasive species and could act as a barrier for its spread westward. We suggest that metabolic scope can be used as a tool to evaluate the potential invasiveness of alien species and the resilience to global warming of native species. PMID:27293680

  12. Specific IgE to fish extracts does not predict allergy to specific species within an adult fish allergic population

    PubMed Central

    2014-01-01

    Background Fish is an important cause of food allergy. Studies on fish allergy are scarce and in most cases limited to serological evaluation. Our objective was to study patterns of self-reported allergy and tolerance to different commonly consumed fish species and its correlation to IgE sensitization to the same species. Methods Thirty-eight adult fish allergic patients completed a questionnaire regarding atopy, age of onset and symptoms to 13 commonly consumed fish species in the Netherlands (pangasius, cod, herring, eel, hake, pollock, mackerel, tilapia, salmon, sardine, tuna, plaice and swordfish). Specific IgE to these fish extracts were analyzed by ImmunoCAP. Results Median age of onset of fish allergy was 8.5 years. Severe reactions were reported by the majority of patients (n = 20 (53%) respiratory and of these 20 patients, 6 also had cardiovascular symptoms). After diagnosis, 66% of the patients had eliminated all fish from their diet. Allergy to all species ever tried was reported by 59%. In relation to species ever tried, cod (84%) and herring (79%) were the most frequently reported culprit species while hake (57%) and swordfish (55%) were the least frequent. A positive sIgE (value ≥ 0.35 kUA/L) to the culprit species ranged between 50% (swordfish) and 100% (hake). In tolerant patients, a negative sIgE (value < 0.35 kUA/L) ranged from 0% (hake, pollock and swordfish) to 75% (sardine). For cod, the agreement between sIgE test results and reported allergy or tolerance was 82% and 25%, respectively. Sensitization to cod parvalbumin (Gad c 1) was present in 77% of all patients. Conclusion Serological cross-reactivity between fish species is frequent, but in a significant proportion of patients, clinical relevance appears to be limited to only certain species. A well-taken history or food challenge is required for discrimination between allergy to the different fish species. PMID:25225608

  13. Myxidium leei (Myxozoa) infections in aquarium-reared Mediterranean fish species.

    PubMed

    Padrós, F; Palenzuela, O; Hispano, C; Tosas, O; Zarza, C; Crespo, S; Alvarez-Pellitero, P

    2001-10-29

    An episode of parasitic enteritis causing trickling mortalities at an exhibition aquarium reproducing Mediterranean ecosystems was found to be caused by the myxozoan parasite Myxidium leei Diamant, Lom & Dykova 1994. The myxozoan was recorded in 25 different fish species belonging to 16 Genera, 10 Families and 4 Orders. It was mainly detected in the intestine of affected fish, and was responsible for severe chronic enteritis. The parasite was probably introduced into the facilities with infected wild fish, and transmitted directly from fish to fish by cohabitation, transfer of infected material and necrophagia. Fish belonging to the Families Labridae and Blenniidae appeared as most susceptible, and the incidence of infections in members of the Sparidae was low. This study significantly widens the host spectrum for this virulent parasite and now includes many ubiquitous coastal Mediterranean species. Wild fish may have a significant role in the transmission of myxidiosis of cultured sparid fish. PMID:11797916

  14. SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK FOR ENDANGERED FISHES, INCLUDING INTERSPECIES TOXICITY CORRELATIONS

    EPA Science Inventory

    Rainbow trout, fathead minnows, and sheepshead minnows were tested as surrogate species to assess contaminant risk for 17 endangered fishes and one toad species. Acute toxicity tests were conducted with carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin in accorda...

  15. Species List of Alaskan Birds, Mammals, Fish, Amphibians, Reptiles, and Invertebrates. Alaska Region Report Number 82.

    ERIC Educational Resources Information Center

    Taylor, Tamra Faris

    This publication contains a detailed list of the birds, mammals, fish, amphibians, reptiles, and invertebrates found in Alaska. Part I lists the species by geographical regions. Part II lists the species by the ecological regions of the state. (CO)

  16. LOCATIONAL DIFFERENCES IN MERCURY AND SELENIUM LEVELS IN 19 SPECIES OF SALTWATER FISH FROM NEW JERSEY

    PubMed Central

    Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

    2014-01-01

    Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

  17. Locational differences in mercury and selenium levels in 19 species of saltwater fish from New Jersey.

    PubMed

    Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

    2011-01-01

    Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

  18. Quantification of major allergen parvalbumin in 22 species of fish by SDS-PAGE.

    PubMed

    Kobayashi, Yukihiro; Yang, Tao; Yu, Cheng-Tao; Ume, Chiaki; Kubota, Hiroyuki; Shimakura, Kuniyoshi; Shiomi, Kazuo; Hamada-Sato, Naoko

    2016-03-01

    Fish is an important causative material of food allergy. Although the allergenicity of fish is considered to correlate with the content of parvalbumin, the major fish allergen, available information about the parvalbumin content in fish is limited. In this study, a simple and reliable quantification method for fish parvalbumin by SDS-PAGE was first established. Application of the SDS-PAGE method to 22 species of fish revealed a marked variation in parvalbumin content among fish. Furthermore, the parvalbumin content was found to be higher in dorsal white muscle than in ventral white muscle, in rostral part of white muscle than in caudal part of white muscle and in white muscle than in dark muscle. IgE reactivity of fish was roughly proportional to parvalbumin content. Interestingly, large-sized migratory fish, such as salmon, swordfish and tuna, were commonly very low in both parvalbumin content and IgE reactivity. PMID:26471564

  19. Conditions for coexistence of freshwater mussel species via partitioning of fish host resources

    USGS Publications Warehouse

    Rashleigh, B.; DeAngelis, D.L.

    2007-01-01

    Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larval stage may promote coexistence. A model of resource utilization was developed for two mussel species and analyzed to determine conditions for coexistence. Mussel species were predicted to coexist when they differed in terms of their success in contacting different fish host species; very similar strategies offered limited possibilities for coexistence. Differences in the mussel species' maximum infestation loads on the fish hosts that coincided with differences in their fish host contact success promoted coexistence. Mussel species with a given set of trade-offs in fish host use were predicted to coexist only for a subset of relative fish host abundances, so a shift in relative fish host abundances could result in the loss of a mussel species. An understanding of the conditions for freshwater mussel species coexistence can help explain high mussel diversity in rivers and guide ongoing conservation activities. ?? 2006 Elsevier B.V. All rights reserved.

  20. [Preparation and analysis of dehydrated mixtures of vegetables and underutilized fish species flours: I. Dehydrated mixtures of cereal-fish].

    PubMed

    Luna, G; Rey, J L; Castro, L M; Corona, N; Ferreiros, E; Luzardo, M

    1990-09-01

    For the purpose of providing possible solutions to the malnutrition problems affecting those populations where cereals and tubers form an important portion of their daily intake, products were prepared from dehydrated mixtures of cereals and under-utilized fish, but which contain high-quality protein. Two cereals were selected for our experiments: rice and corn, and a marine under-utilized fish species (Macrodon ancyclodon). The minced fish muscle recovered by mechanical deboning was mixed with the cereal, obtaining mixtures with 5%, 10% and 15% fish on a dry basis. Feeding experiments using Wistar weaning rats were then carried out to evaluate the most important characteristics. An amino acid profile which reflected high-quality protein was obtained, as evidenced by the excellent PER, NPU, NPR and digestibility values determined. The dehydrated mixtures of fish/cereal flour prepared with 5% and up to 10% fish (dry basis), did not present any odour, but as of the 15% level, fish odour was perceived. Therefore, the use of dehydrated mixtures of fish/cereal flours with up to 10% fish in preparing food products, is recommended, since these would be of great help in solving the scarcity of good-quality protein, particularly in the developing countries. PMID:2134143

  1. A Mixed-Method Approach for Quantifying Illegal Fishing and Its Impact on an Endangered Fish Species.

    PubMed

    Free, Christopher M; Jensen, Olaf P; Mendsaikhan, Bud

    2015-01-01

    Illegal harvest is recognized as a widespread problem in natural resource management. The use of multiple methods for quantifying illegal harvest has been widely recommended yet infrequently applied. We used a mixed-method approach to evaluate the extent, character, and motivations of illegal gillnet fishing in Lake Hovsgol National Park, Mongolia and its impact on the lake's fish populations, especially that of the endangered endemic Hovsgol grayling (Thymallus nigrescens). Surveys for derelict fishing gear indicate that gillnet fishing is widespread and increasing and that fishers generally use 3-4 cm mesh gillnet. Interviews with resident herders and park rangers suggest that many residents fish for subsistence during the spring grayling spawning migration and that some residents fish commercially year-round. Interviewed herders and rangers generally agree that fish population sizes are decreasing but are divided on the causes and solutions. Biological monitoring indicates that the gillnet mesh sizes used by fishers efficiently target Hovsgol grayling. Of the five species sampled in the monitoring program, only burbot (Lota lota) showed a significant decrease in population abundance from 2009-2013. However, grayling, burbot, and roach (Rutilus rutilus) all showed significant declines in average body size, suggesting a negative fishing impact. Data-poor stock assessment methods suggest that the fishing effort equivalent to each resident family fishing 50-m of gillnet 11-15 nights per year would be sufficient to overexploit the grayling population. Results from the derelict fishing gear survey and interviews suggest that this level of effort is not implausible. Overall, we demonstrate the ability for a mixed-method approach to effectively describe an illegal fishery and suggest that these methods be used to assess illegal fishing and its impacts in other protected areas. PMID:26625154

  2. A Mixed-Method Approach for Quantifying Illegal Fishing and Its Impact on an Endangered Fish Species

    PubMed Central

    Free, Christopher M.; Jensen, Olaf P.; Mendsaikhan, Bud

    2015-01-01

    Illegal harvest is recognized as a widespread problem in natural resource management. The use of multiple methods for quantifying illegal harvest has been widely recommended yet infrequently applied. We used a mixed-method approach to evaluate the extent, character, and motivations of illegal gillnet fishing in Lake Hovsgol National Park, Mongolia and its impact on the lake’s fish populations, especially that of the endangered endemic Hovsgol grayling (Thymallus nigrescens). Surveys for derelict fishing gear indicate that gillnet fishing is widespread and increasing and that fishers generally use 3–4 cm mesh gillnet. Interviews with resident herders and park rangers suggest that many residents fish for subsistence during the spring grayling spawning migration and that some residents fish commercially year-round. Interviewed herders and rangers generally agree that fish population sizes are decreasing but are divided on the causes and solutions. Biological monitoring indicates that the gillnet mesh sizes used by fishers efficiently target Hovsgol grayling. Of the five species sampled in the monitoring program, only burbot (Lota lota) showed a significant decrease in population abundance from 2009–2013. However, grayling, burbot, and roach (Rutilus rutilus) all showed significant declines in average body size, suggesting a negative fishing impact. Data-poor stock assessment methods suggest that the fishing effort equivalent to each resident family fishing 50-m of gillnet 11–15 nights per year would be sufficient to overexploit the grayling population. Results from the derelict fishing gear survey and interviews suggest that this level of effort is not implausible. Overall, we demonstrate the ability for a mixed-method approach to effectively describe an illegal fishery and suggest that these methods be used to assess illegal fishing and its impacts in other protected areas. PMID:26625154

  3. Seasonal variation of assemblage and feeding guild structure of fish species in a boreal tidal basin

    NASA Astrophysics Data System (ADS)

    Kellnreitner, Florian; Pockberger, Moritz; Asmus, Harald

    2012-08-01

    Species composition, abundance, feeding relationships and guild structure of the fish assemblage in the Sylt-Rømø bight, a tidal basin in the northern Wadden Sea, were investigated to show seasonal differences and the importance of functional groups in this area. The tidal flats and in shallow subtidal areas were sampled using a beach seine and a bottom trawl net was used for deeper subtidal areas and tidal gullies. Species richness of fish was highest in summer where 26 species were caught, while the lowest richness was recorded in winter (17 species). Clear differences in species richness and abundance were found between shallow areas and deeper parts of the bight. Clupea harengus and Ammodytes tobianus were the most abundant species in deeper areas, while Pomatoschistus microps and Pomatoschistus minutus dominated shallower waters. Gut contents of 27 fish species were identified and the guild structure analyzed by UPGMA clustering of niche overlaps. Calanoid copepods (19.9%), Crangon crangon (18.2%) and mysid shrimps (8.4%) were the most abundant prey items of all fish species combined. Seven feeding guilds were present in the fall and winter, and eight and six in spring and summer, respectively. Fish feeding on calanoid copepods and C. crangon were present year round, whereas the occurrence of other guilds varied between seasons. Species composition of prey changed through seasons and, for some fish species, even the feeding mode itself varied with season. Most noticeable, 11 fish species changed guilds between seasons. We found a convergence in summer towards abundant prey items, whereas in winter diet overlap was lower. This is the first investigation of guild structure of almost all fish species present in a Wadden Sea area, and shows that consideration of seasonal differences is essential when determining feeding relationships of fish in temperate areas.

  4. Survey of parasitic fauna of different ornamental freshwater fish species in Iran.

    PubMed

    Adel, Milad; Ghasempour, Fatemeh; Azizi, Hamid Reza; Shateri, Mohamad Hadi; Safian, Ahmad Reza

    2015-01-01

    Parasitic diseases are harmful and limiting factors in breeding and rearing ornamental fish industry. In this study, 400 apparently healthy ornamental fishes from five species (each species 80 specimens) including: Goldfish (Carassius auratus), guppy (Poecilia reticulate), angelfish (Pterophyllum scalare), discus (Symphsodon discus) and sailfin mollies (Poecilia latipinna) was obtained from a local ornamental fish farm in the north of Iran during 2011 to 2012. The primary purpose of this study was to determine the parasitic infections of aquarium fish in Iran. For this purpose, fish were first examined for ectoparasites using wet mount under a light microscope. Then, the alimentary ducts of fish were observed under light and stereo microscope. In survey of different infection rates for different parasitic infections in examining fish: Dactylogyrus sp., Gyrodactylus sp., Ichthyophthirius multifiliis Trichodina reticulata, Capillaria sp. and Lernaea cyprinacea were collected from five species. All five fish species had Monogenea (Gyrodactylidae and Dactylogyridae) in their skins and gills, the highest prevalence was observed in C. auratus and the lowest was in P. scalare and S. discus. Also, Capillaria sp. was reported as a first record from the abdominal cavity of P. scalare in Iran. Our findings revealed that the protozoal infections are very common among aquarium fishes. Although, no gross pathology was observed among infected fishes, but it is likely that in case of any changes in the environment, then parasitic infections could be harmful. PMID:25992255

  5. Belowground competition among invading detritivores.

    PubMed

    Chang, Chih-Han; Szlavecz, Katalin; Filley, Timothy; Buyer, Jeffrey S; Bernard, Michael J; Pitz, Scott L

    2016-01-01

    The factors regulating soil animal communities are poorly understood. Current theory favors niche complementarity and facilitation over competition as the primary forms of non-trophic interspecific interaction in soil fauna; however, competition has frequently been suggested as an important community-structuring factor in earthworms, ecosystem engineers that influence belowground processes. To date, direct evidence of competition in earthworms is lacking due to the difficulty inherent in identifying a limiting resource for saprophagous animals. In the present study, we offer the first direct evidence of interspecific competition for food in this dominant soil detritivore group by combining field observations with laboratory mesocosm experiments using 13C and 15N double-enriched leaf litter to track consumption patterns. In our experiments, the Asian invasive species Amynthas hilgendorfi was a dominant competitor for leaf litter against two European species currently invading the temperate deciduous forests in North America. This competitive advantage may account for recent invasion success of A. hilgendorfi in forests with established populations of European species, and we hypothesize that specific phenological differences play an important role in determining the outcome of the belowground competition. In contrast, Eisenoides lonnbergi, a common native species in the Eastern United States, occupied a unique trophic position with limited interactions with other species, which may contribute to its persistence in habitats dominated by invasive species. Furthermore, our results supported neither the hypothesis that facilitation occurs between species of different functional groups nor the hypothesis that species in the same group exhibit functional equivalency in C and N translocation in the soil. We propose that species identity is a more powerful approach to understand earthworm invasion and its impacts on belowground processes. PMID:27008785

  6. Species- and tissue-specific mercury bioaccumulation in five fish species from Laizhou Bay in the Bohai Sea of China

    NASA Astrophysics Data System (ADS)

    Liu, Jinhu; Cao, Liang; Huang, Wei; Dou, Shuozeng

    2013-05-01

    Mercury (Hg) concentrations in the tissues (muscle, stomach, liver, gills, skin, and gonads) of five fish species (mullet Liza ha em atocheil us, flathead fish Platycephalus indicus, sea bass Lateolabrax japonic u s, mackerel Scomberomorus niphonius and silver pomfret Pampus argenteus) collected from Laizhou Bay in the Bohai Sea of China were investigated. The results indicate that Hg bioaccumulation in the five fish was tissue-specific, with the highest levels in the muscle and liver, followed by the stomach and gonads. The lowest levels were found in the gills and skin. Fish at higher trophic levels (flathead fish and sea bass) exhibited higher Hg concentrations than consumers at lower trophic levels. Mercury bioaccumulation tended to be positively correlated with fish length in mullet, silver pomfret, mackerel, and flathead fish, but was negatively correlated with fish length in sea bass. The Hg concentrations in the muscles of all fish species in Laizhou Bay were within the permissible limits of food safety set by national and international criteria. However, the suggesting maximum consumption of sea bass is 263 g per week for human health.

  7. Comparative toxicity of 3-trifluormethyl-4-nitrophenol (TFM) to larval lampreys and eleven species of fishes

    USGS Publications Warehouse

    Applegate, Vernon C.; King, Everett L.

    1962-01-01

    The tolerances of larval lampreys, rainbow trout, and 10 species of warmwater fishes to 3-trifluormethyl-4-nitrophenol (TFM), a selective lamprey larvicide, were determined in three dilution waters of different physical and chemical characteristics. Differential toxic effects of the chemical to larval lampreys and test fishes varied broadly with the species of fish. Smallmouth bass and other centrarchids were most tolerant of the chemical; walleye, yellow perch, bullheads, and white suckers were most susceptible. The toxicity of TFM to both lampreys and fishes diminished as the conductivity and alkalinity of the dilution water increased. The differential action of the chemical was retained in all waters, however.

  8. Fish status survey of Nordic lakes: effects of acidification, eutrophication and stocking activity on present fish species composition.

    PubMed

    Tammi, Jouni; Appelberg, Magnus; Beier, Ulrika; Hesthagen, Trygve; Lappalainen, Antti; Rask, Martti

    2003-03-01

    The status of fish populations in 3821 lakes in Norway, Sweden and Finland was assessed in 1995-1997. The survey lakes were chosen by stratified random sampling from all (126 482) Fennoscandian lakes > or = 0.04 km2. The water chemistry of the lakes was analyzed and information on fish status was obtained by a postal inquiry. Fish population losses were most frequent in the most highly acidified region of southern Norway and least common in eastern Fennoscandia. According to the inquiry results, the number of lost stocks of brown trout (Salmo trutta), roach (Rutilus rutilus), Arctic char (Salvelinus alpinus) and perch (Perca fluviatilis) was estimated to exceed 10000. The number of stocks of these species potentially affected by the low alkalinity of lake water was estimated to exceed 11000. About 3300 lakes showed high total phosphorus (> 25 microg L(-1)) and cyprinid dominance in eastern Fennoscandia, notably southwestern Finland. This survey did not reveal any extinction of fish species due to eutrophication. One-third of the lakes had been artificially stocked with at least one new species, most often brown trout, whitefish (Coregonus lavaretus s.l.), Arctic char, rainbow trout (Oncorhynchus mykiss), pike-perch (Stizostedion lucioperca), grayling (Thymallus thymallus), pike (Esox lucius), bream (Abramis brama), tench (Tinca tinca) and European minnow (Phoxinus phoxinus). The number of artificially manipulated stocks of these species in Fennoscandian lakes was estimated to exceed 52000. Hence, the number of fish species occurring in Nordic lakes has recently been changed more by stockings than by losses of fish species through environmental changes such as acidification. PMID:12733793

  9. Targeted demersal fish species exhibit variable responses to long-term protection from fishing at the Houtman Abrolhos Islands

    NASA Astrophysics Data System (ADS)

    Bornt, Katrina R.; McLean, Dianne L.; Langlois, Tim J.; Harvey, Euan S.; Bellchambers, Lynda M.; Evans, Scott N.; Newman, Stephen J.

    2015-12-01

    Natural fluctuations in the abundance and length of targeted fish are often disrupted by acute environmental changes and anthropogenic impacts, particularly fishing pressure. Long-term assessments of targeted fish populations inside and outside areas closed to fishing are often necessary to elucidate these effects, yet few of these studies extend over long time periods. We assessed trends in the abundance and length of six targeted fish species in areas open and closed to fishing on seven occasions spanning a 9-year period (2005-2010 and 2013) at the Houtman Abrolhos Islands, Western Australia. Shallow (8-12 m) and deep (22-26 m) coral-dominated reef sites were sampled across four geographically separated island groups using baited remote underwater stereo-video (stereo-BRUV). Between 2005 and 2010, populations of Lethrinus miniatus, Lethrinus nebulosus, Plectropomus leopardus, and Chrysophrys auratus became increasingly dominated by larger individuals, potentially indicative of an ageing population. Between 2010 and 2013, however, there was a significant increase in the proportion of smaller L. miniatus, L. nebulosus, and P. leopardus in both open and closed areas, reflecting increased recruitment perhaps due to changing environmental conditions associated with a marine heat wave anomaly. This recruitment pulse was not observed for the other species in this study ( Chr. auratus, Choerodon rubescens, and Glaucosoma hebraicum). Lethrinus miniatus, L. nebulosus, Chr. auratus, and P. leopardus were larger in closed areas relative to open areas; however, they were not more abundant. These complex responses to protection also varied across sampling years for certain species (e.g., P. leopardus). Monitoring changes over the long-term in areas open and closed to fishing provides a sound basis for separating environmental variability from that associated with fishing mortality, which is crucial for optimising fisheries management.

  10. Accumulation features of arsenic species in various fishes collected from coastal cities in Korea

    NASA Astrophysics Data System (ADS)

    Choi, Sung-Deuk; Son, Hee-Sik; Choi, Minkyu; Park, Min-Kyu

    2015-12-01

    In this study, 36 fish species were collected from three coastal cities in Korea to investigate levels and patterns of six arsenicals (arsenite: As (III), arsenate: As (V), arsenocholine: AsC, arsenobetaine: AsB, monomethylarsonic acid: MMA, and dimethylarsinic acid: DMA). The levels of ∑6 As in the different fish species varied substantially, ranging from 0.02 μg As/g ww (Islaeli carp) to 9.65 μg As/g ww (Skate ray) with a median of 0.40 μg As/g ww. All the arsenicals in marine fishes showed higher levels than those in freshwater fishes due to fish feed living in saline water. Overall, marine carnivorous fishes seem to be more contaminated with arsenic. For all the fish samples, AsB (mean fraction: 90.6%) was dominant among the six arsenicals, indicating biomethylation of inorganic arsenic and accumulation of AsB. Fish species with high water contents showed elevated levels of As (III), but there was no further significant correlations between arsenicals and water/lipid contents. Concentrations of As (V) were significantly lower than those of As (III), which implies that As (V) is reduced during biomethylation of inorganic arsenic. Consequently, we hypothesize that the toxicity of arsenic (mainly derived from As (III)) can be increased by the reduction of As (V), especially for the fish species with higher water contents.

  11. Invaders eating invaders: Exploitation of novel alien prey by the alien shimofuri goby in the San Francisco Estuary, California

    USGS Publications Warehouse

    Matern, S.A.; Brown, L.R.

    2005-01-01

    The shimofuri goby (Tridentiger bifasciatus), which is native to Asian estuaries, was recently introduced to the San Francisco Estuary, California, USA. We conducted gut content analyses to examine the goby's feeding ecology in this highly invaded estuary. Shimofuri gobies were generalist predators on benthic invertebrates, consuming seasonally abundant prey, especially amphipods (Corophium spp.). In addition, shimofuri goby utilized two novel prey items not exploited by other resident fishes - hydroids (Cordylophora caspia) and barnacle (Balanus improvisus) cirri, both of which are alien. The shimofuri goby's feeding ecology appears well-suited to the fluctuating environment of the San Francisco Estuary and may partially explain observed increases in shimofuri goby abundance compared with declines in populations of some native species. ?? Springer 2005.

  12. Species-specific preferences of German recreational anglers for freshwater fishing experiences, with emphasis on the intrinsic utilities of fish stocking and wild fishes.

    PubMed

    Arlinghaus, R; Beardmore, B; Riepe, C; Meyerhoff, J; Pagel, T

    2014-12-01

    To answer the question, whether anglers have an intrinsic preference for stocking or a preference for catch outcomes (e.g. catch rates) believed to be maintained by stocking, a discrete choice experiment was conducted among a sample of anglers (n = 1335) in Lower Saxony, Germany. After controlling for catch aspects of the fishing experience, no significant influence of two stocking attributes (stocking frequency and composition of the catch in terms of wild v. hatchery fishes) on the utility gained from fishing was found for any of the freshwater species that were studied. It was concluded that the previously documented large appreciation of fish stocking by anglers may be indicative of an underlying preference for sufficiently high catches rather than reflect an intrinsic preference for stocking or the catching of wild fishes per se. PMID:25469949

  13. Interpopulation variation in allelopathic traits informs restoration of invaded landscapes

    PubMed Central

    Lankau, Richard A

    2012-01-01

    Invasive species can show substantial genetic variation in ecologically important traits, across ranges as well within the introduced range. If these traits affect competition with native species, then management may benefit from considering the genetic landscape of the invader. Across their introduced range, Alliaria petiolata populations vary in their investment in allelopathic traits according to invasion history, which could lead to gradients of impact on native species. Red oak (Quercus rubra) seedlings were transplanted into eight A. petiolata-invaded sites that varied in their invasion history and allelochemical concentrations. At each site, an invader removal treatment was crossed with experimental inoculations of native soil biota, to test whether the benefits of these restoration actions differed across invader populations. Q. rubra seedlings grew faster in invader populations with a longer invasion history and lower allelochemical concentrations. Invader removal and soil inoculation interacted to determine seedling growth, with the benefits of soil inoculation increasing in younger and more highly allelopathic invader populations. A greenhouse experiment using soils collected from experimentally inoculated field plots found similar patterns. These results suggest that the impact of this invader varies across landscapes and that knowledge of this variation could improve the efficacy and efficiency of restoration activities. PMID:25568047

  14. PREDICTIONS IN AN INVADED WORLD - PART II: USING NICHE MODELS TO PREDICT DISTRIBUTIONS OF MARINE/ESTUARINE SPECIES AT THE ESTUARY SCALE

    EPA Science Inventory

    To better understand the potential geographical distributions of nonindigenous species (NIS), we are evaluating the ability of niche models to predict the presence of existing native and NIS species within individual estuaries based on landscape characteristics. One model being ...

  15. Does pH affect fish species richness when lake area is considered?

    USGS Publications Warehouse

    Rago, P.J.; Wiener, J.G.

    1986-01-01

    Numerous surveys have shown that fish species richness (number of species) is positively correlated with lake pH. However, species richness of fish communities is also correlated with lake size, and low-pH lakes are often small. Thus, conclusions drawn from examination of fish community structure relative to spatial (among- lake) variation in pH have been limited by uncertainties regarding the confounded effects of lake area. The authors used two statistical methods, analysis of covariance and a nonparametric blocked comparison test, to remove effects of lake area and compare fish species richness in low-pH and high-pH lakes. Data from six previous surveys of water chemistry and fish communities in lakes of Ontario and northern Wisconsin were examined. Lakes with low pH ( less than or equal to 6.0) contained significantly fewer fish species than lakes with high pH (> 6.0) when the effect of lake area was considered. A simple probabilistic model showed that the ability to detect differences in species richness is low when lake areas and the pool of potential colonizing species are small. The authors recommend the blocked comparison test for separating the effects of lake area and pH on species richness.

  16. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  17. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  18. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  19. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  20. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  1. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches

    PubMed Central

    Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region. PMID:26644988

  2. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches.

    PubMed

    Wagner, Elena L E S; Roche, Dominique G; Binning, Sandra A; Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region. PMID:26644988

  3. Concentrations of microcystins in tissues of several fish species from freshwater reservoirs and ponds.

    PubMed

    Kopp, Radovan; Palíková, Miroslava; Adamovský, Ondřej; Ziková, Andrea; Navrátil, Stanislav; Kohoutek, Jiří; Mareš, Jan; Bláha, Luděk

    2013-12-01

    The aim of this study is to summarise the determination of concentrations of microcystins (MCs) in muscle and liver of freshwater fish species caught in stagnant waters of the Czech Republic. Within the years 2007-2009, 351 muscle samples and 291 liver samples of 16 freshwater fish species derived from four fishponds, and four water reservoirs were analysed. MCs were detected in 53 liver samples. The highest concentrations of microcystins were determined in liver samples of carnivorous fish species; 50.3 ng/g of fresh weight (FW) in perch (Perca fluviatilis) and 22.7 ng/g FW in pikeperch (Sander lucioperca). MCs in liver were detected in other five fish species; asp (Aspius aspius), pike (Esox lucius), common carp (Cyprinus carpio), grass carp (Ctenopharyngodon idella) and European eel (Anguilla anguilla). Concentrations of MCs in liver of nine fish species (European bream, whitefish, tench, silver carp, European catfish, roach, chub, crucian carp and rudd) were below the detection limit of 1.2-5.4 ng/g FW for different MC congeners. However, the concentrations of MCs in all muscle samples were below the detection limit. The assessment of MCs concentrations might be influenced by the detection method used. Due to the concentrations of MCs being below the detection limit in muscle samples of all fish species analysed, it seems that there might be a low potential threat for human health in case of fish muscle consumption. PMID:23756815

  4. Predators reduce abundance and species richness of coral reef fish recruits via non-selective predation

    NASA Astrophysics Data System (ADS)

    Heinlein, J. M.; Stier, A. C.; Steele, M. A.

    2010-06-01

    Predators have important effects on coral reef fish populations, but their effects on community structure have only recently been investigated and are not yet well understood. Here, the effect of predation on the diversity and abundance of young coral reef fishes was experimentally examined in Moorea, French Polynesia. Effects of predators were quantified by monitoring recruitment of fishes onto standardized patch reefs in predator-exclosure cages or uncaged reefs. At the end of the 54-day experiment, recruits were 74% less abundant on reefs exposed to predators than on caged ones, and species richness was 42% lower on reefs exposed to predators. Effects of predators varied somewhat among families, however, rarefaction analysis indicated that predators foraged non-selectively among species. These results indicate that predation can alter diversity of reef fish communities by indiscriminately reducing the abundance of fishes soon after settlement, thereby reducing the number of species present on reefs.

  5. Seasonal diet shifts of seven fish species in an Atlantic rainforest stream in Southeastern Brazil.

    PubMed

    Deus, C P; Petrere-Junior, M

    2003-11-01

    We analyzed the stomach contents of 116 individuals belonging to seven fishes species in order to investigate seasonal changes in feeding strategy and how trophic interactions between species affect community structure in an Atlantic rainforest stream in Southeastern Brazil. Oligosarcus hepsetus and Pimelodus sp. consumed fewer items during the winter. Phalloceros caudimaculatus switched feeding habits from detritus during summer to algae during winter. These examples are related to variations in food availability and species feeding selectivity. The highest diet overlap values, for most species, as measured using Schoener's index, were observed in summer, along with a species tendency to be more generalist. Feeding pattern variation may influence the fish community structure. PMID:15029369

  6. Gnathostoma infection in fish caught for local consumption in Nakhon Nayok Province, Thailand I. Prevalence and fish species.

    PubMed

    Rojekittikhun, Wichit; Chaiyasith, Tossapon; Nuamtanong, Supaporn; Komalamisra, Chalit

    2004-09-01

    Between August 2000 and August 2001, 12,216 fish of 73 species were purchased from several local markets in Nakhon Nayok Province, Thailand, and examined for the presence of Gnathostoma larvae. Almost all species were fresh-water fish that had grown naturally, rather than raised commercially. Eight species were found to be infected with gnathostome larvae. The overall prevalence was 5.1% (626/12,216) and a total of 5,969 larvae was recovered. The highest rate of infection (30.1 %) was found in Monopterus albus (swamp eel). The rates in the remaining infected fish were as follows: Anabas testudineus (climbing perch) 7.7%, Channa striata (striped snake-head fish) 7.4%, Clarius macrocephalus (Gunther's walking catfish) 6.7%, Channa micropeltes (giant snake-head fish) 5.1%, Channa lucius (blotched snake-head fish) 4.0%, Clarius batrachus (Batrachian walking catfish) 1.4%, and Ompok krattensis (butter sheatfish) 0.6%. The mean number of larvae/fish was highest in swamp eels (10.0 larvae/eel), and the maximum number of 698 larvae was recovered from one eel. The body sizes of the recovered G. spinigerum advanced third-stage larvae were 2.70-5.10 mm in length (average, 3.97+/-0.50 mm) and 0.29-0.60 mm in width (average, 0.40+/-0.04 mm). The average number of cephalic hooklets of the larvae from rows 1 to 4 were 41.8+/-0.5 (range, 40-43), 43.6+/-0.6 (range, 42-45), 46.1+/-0.9 (range, 44-48) and 49.3+/-0.7 (range, 48-51), respectively. PMID:15689060

  7. Species succession and sustainability of the Great Lakes fish community

    USGS Publications Warehouse

    Eshenroder, Randy L.; Burnham-Curtis, Mary K.

    1999-01-01

    This article concentrates on the sustainability of the offshore pelagic and deepwater fish communities that were historically dominated by lake trout (Salvelinus namaycush). The causes of alteration in these fish communities (i.e., overfishing, introductions, and cultural eutrophication) were identified by Loftus and Regier (1972). Here we look at the ecology of these altered communities in relation to sustainability and discuss the need for restoration.

  8. Species-specific patterns of aggregation of wild fish around fish farms

    NASA Astrophysics Data System (ADS)

    Dempster, T.; Sanchez-Jerez, P.; Uglem, I.; Bjørn, P.-A.

    2010-01-01

    Fish-farming structures are widespread in coastal waters and are highly attractive to wild fish. Several studies have estimated that tons to tens of tons of wild fish aggregate around fish farms. These estimates assumed that the majority of wild fish are concentrated immediately beneath farms, although this assumption has never been explicitly tested. We tested the hypothesis that abundances of wild fish would be greatest immediately beneath farms and progressively diminish with distance at 4 full-scale coastal salmon ( Salmo salar) farms in Norway. At each farm, fish were counted with a video-camera system at 5 different distances from the cages (farm = 0 m, 25, 50, 100 and 200 m) throughout the water column on three separate days. Combined across all locations and times, the total abundance of wild fish was 20 times greater at the farm than at the 200 m sampling distance. Saithe ( Pollachius virens) dominated assemblages at all 4 farms and were consistently significantly more abundant at the farm than at the 25-200 m distances. This 'tight aggregation' around farms corresponds to the reliance of saithe on waste feed when they school near farms. In contrast, patterns of distribution of both cod ( Gadus morhua) and poor cod ( Trisopterus minutus) varied among farms, with either highest abundances at the farm or a more even distribution of abundance across all 5 distances sampled. No specific pattern of aggregation was evident for the bottom-dwelling haddock ( Melanogrammus aeglefinus). Our results suggest that the present 100 m no-fishing zone around salmon farms protects the greatest proportion of farm-aggregated saithe and cod from fishing during the daytime. However, whether this reduces their overall susceptibility to fishing requires further research regarding nighttime distribution and movements.

  9. SEASONAL TOXICITY OF AMMONIA TO FIVE FISH AND NINE INVERTEBRATE SPECIES

    EPA Science Inventory

    The effects of ammonia toxicity were determined for 14 aquatic species (5 fish and 9 invertebrates) in short-term laboratory tests. Forty-five tests were conducted and individual 96-h values (48-h for cladocera) ranged from 0.26 to 22.8 mg/1 NH3. The most sensitive fish and inver...

  10. 78 FR 77659 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-24

    ... (16344) was published in the Federal Register on April 14, 2011 (76 FR 20956). Permit 16344 was issued to... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... CFR parts 222-226) governing listed fish and wildlife permits. ] Species Covered in This Notice...

  11. 75 FR 33243 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-11

    ... Register on June 17, 2009 (74 FR 28666). Permit 14268 was issued to TRPA on April 27, 2010. Permit 14268... Anadromous Fish AGENCY: NOAA's National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric...) governing listed fish and wildlife permits. Species Covered in This Notice This notice is relevant to...

  12. Connecting ground water influxes with fish species diversity in an urbanized watershed

    USGS Publications Warehouse

    Steffy, L.Y.; McGinty, A.L.; Welty, C.; Kilham, S.S.

    2004-01-01

    Valley Creek watershed is a small stream system that feeds the Schuylkill River near Philadelphia, Pennsylvania. The watershed is highly urbanized, including over 17 percent impervious surface cover (ISC) by area. Imperviousness in a watershed has been linked to fish community structure and integrity. Generally, above 10 to 12 percent ISC there is marked decline in fish assemblages with fish being absent above 25 percent ISC. This study quantifies the importance of ground water in maintaining fish species diversity in subbasins with over 30 percent ISC. Valley Creek contains an atypical fish assemblage in that the majority of the fish are warm-water species, and the stream supports naturally reproducing brown trout, which were introduced and stocked from the early 1900s to 1985. Fish communities were quantified at 13 stations throughout the watershed, and Simpson's species diversity index was calculated. One hundred and nine springs were located, and their flow rates measured. A cross covariance analysis between Simpson's species diversity index and spring flow rates upstream of fish stations was performed to quantify the spatial correlation between these two variables. The correlation was found to be highest at lag distances up to about 400 m and drop off significantly beyond lag distances of about 800 m.

  13. OCCURRENCE OF TWO LEECH SPECIES (ANNELIDA: HIRUDINEA) ON FISHES IN THE KENTUCKY RIVER

    EPA Science Inventory

    Little is known specifically on the feeding relationships between parasitic leeches and fish in North America. During an electrofishing survey conducted on the main stem of the Kentucky River in the summer of 2000, the presence of leeches was documented on six species of fish. ...

  14. 78 FR 69823 - Atlantic Highly Migratory Species; Exempted Fishing, Scientific Research, Display, and Chartering...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-21

    ...NMFS announces its intent to issue Exempted Fishing Permits (EFPs), Scientific Research Permits (SRPs), Display Permits, Letters of Acknowledgment (LOAs), and Chartering Permits for Atlantic highly migratory species (HMS) in 2014. Exempted fishing permits and related permits would authorize collection of a limited number of tunas, swordfish, billfishes, and sharks (collectively known as HMS)......

  15. CONDITIONS FOR COEXISTENCE OF FRESHWATER MUSSEL SPECIES VIA PARTITIONING OF FISH HOST RESOURCES

    EPA Science Inventory

    Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larv...

  16. Effects of exploitation, environmental changes, and new species on the fish habitats and resources of Lake Erie

    USGS Publications Warehouse

    Hartman, Wilbur L.

    1973-01-01

    No other lake as large as Lake Erie (surface area, 25,690 km2) has been subjected to such extensive changes in the drainage basin, the lake environment, and the fish populations over the last 150 years. Deforestation and prairie burning led to erosion of the watershed and siltation of valuable spawning grounds. Marsh spawning areas were drained. Lake-to-river spawning migrations of sturgeon, walleye, and other fishes were blocked by mill dams. Accelerated cultural nutrient loading increased total dissolved solids by nearly 50% (1920-70). Phosphate loading reached 469 metric tons per year by the 1950's and continued to increase. The biomass of phytoplankton increased 20-fold between 1919 and 1963. Oxygen demand for decomposition of these algae so degraded oxygen regimes in the western and central basins by the 1950's that the once abundant mayfly nymphs were destroyed and the central basin hypolimnion became anoxic. The sequence of disappearance or severe depletion of fish species was as follows: lake trout, sturgeon, lake herring, lake whitefish, sauger, blue pike, and walleye. Yellow perch are now declining. All resources were intensively exploited at one time or another. Lake trout suffered only this stress, but changes in the watershed significantly stressed sturgeon and lake whitefish. Degradation of the lake spawning grounds, benthos, and oxygen regimes culminated in severe stress by the 1950's on the remnants of the lake herring and lake whitefish, and on the sauger, blue pike, and walleye. Additional mortality may have been imposed on walleye and blue pike fry by predacious smelt that successfully colonized Lake Erie after first appearing in 1932. The cultural stresses, in the probable order of greatest to least net effects on the fish community of Lake Erie, appear to have been: (1) an intense, opportunistic, ineffectively controlled commercial fishery; (2) changes in the watershed, such as erosion and siltation of stream beds and inshore lake areas, and

  17. 78 FR 43145 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-19

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC767 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

  18. 78 FR 34653 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-06-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC717 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

  19. EVALUATION OF THREE FISH SPECIES AS BIOASSAY ORGANISMS FOR DREDGED MATERIAL TESTING

    EPA Science Inventory

    Three fish species, Cyprinodon variegatus, Fundulus similis, and Menidia menidia, were evaluated to determine which is most suitable as a bioassay organism for solid phase testing of dredged material. Acute toxicity and bioaccumulation of polychlorinated biphenyls (PCBs) were mon...

  20. Feeding ecology of some fish species occurring in artisanal fishery of Socotra Island (Yemen).

    PubMed

    Hassan Ali', Mohammed Kaed; Belluscio, Andrea; Ventura, Daniele; Ardizzone, Giandomenico

    2016-04-30

    The demersal species Lethrinus borbonicus, Lethrinus mahsena, Lethrinus microdon, Lethrinus nebulosus, Lutjanus bohar, Lutjanus gibbus, Lutjanus kasmira, Epinephelus fasciatus, Epinephelus stoliczkae, Carangoides gymnostethus and Euthynnus affinis are important coastal fishes species of the northern coast of Socotra (Yemen), exploited by local fishery. The biology and feeding ecology of these species are poorly known in the area. A total of 1239 specimens were sampled from the main fishing landing site of the island (Hadibo). Total length and weight were measured, stomach contents were analyzed, diet overlap, Fulton's Condition index, and trophic levels were estimated. C. gymnostethus, L. microdon and L. kasmira occupied the highest position (T=4.50), L. nebulosus occupied the lower one (TL=3.41). The role of the increasing abundance of small pelagic fish in the diet of many species after the upwelling event is evident, but also different feeding strategies are reported, according to fish ecology. PMID:26880127

  1. Morphological features to distinguish the larval stage of invasive Ruffe (Gymnocephalus cernuus) from native fish species

    EPA Science Inventory

    Larval fish surveys are used in a variety of research and monitoring activities, including identification of nursery habitat and invasive species early detection. Morphologically-based taxonomic identification of larvae collected from these surveys, however, is often challenging....

  2. Morphological features to distinguish the larval stage of invasive Ruffe from native fish species

    EPA Science Inventory

    Larval fish surveys are used in a variety of research and monitoring activities, including identification of nursery habitat and invasive species early detection. Morphologically-based taxonomic identification of larvae collected from these surveys, however, is often challenging....

  3. Host tropism of infectious salmon anaemia virus in marine and freshwater fish species.

    PubMed

    Aamelfot, M; Dale, O B; McBeath, A; Falk, K

    2015-08-01

    The aquatic orthomyxovirus infectious salmon anaemia virus (ISAV) causes a severe disease in farmed Atlantic salmon, Salmo salar L. Although some ISA outbreaks are caused by horizontal transmission of virus between farms, the source and reservoir of the virus is largely unknown and a wild host has been hypothesized. Atlantic salmon are farmed in open net-pens, allowing transmission of pathogens from wild fish and the surrounding environment to the farmed fish. In this study, a large number of fish species were investigated for ISAV host potential. For orthomyxoviruses, a specific receptor binding is the first requirement for infection; thus, the fish species were investigated for the presence of the ISAV receptor. The receptor was found to be widely distributed across the fish species. All salmonids expressed the receptor. However, only some of the cod-like and perch-like fish did, and all flat fish were negative. In the majority of the positive species, the receptor was found on endothelial cells and/or on red blood cells. The study forms a basis for further investigations and opens up the possibility for screening species to determine whether a wild host of ISAV exists. PMID:25048819

  4. Levels of genetic diversity and taxonomic status of Epinephelus species in United Arab Emirates fish markets.

    PubMed

    Ketchum, Remi N; Dieng, Mame M; Vaughan, Grace O; Burt, John A; Idaghdour, Youssef

    2016-04-30

    Understanding the patterns of genetic diversity of fish species is essential for marine conservation and management. This is particularly important in the Arabian Gulf where marine life is subject to extreme environmental conditions that could impact genetic diversity. Here we assess genetic diversity of the most commercially important fish in the United Arab Emirates; groupers (Epinephelus spp.). Sequencing of 973 bp mitochondrial DNA from 140 tissue samples collected in four main fish markets revealed 58 haplotypes clustered within three groups. Data analysis revealed the presence of three distinct Epinephelus species being marketed as one species (hammour): Epinephelus coioides, Epinephelus areolatus and Epinephelus bleekeri. We report species-specific genetic markers and demonstrate that all three species exhibit relatively low levels of genetic variation, reflecting the effect of overfishing and environmental pressures. In light of the genetic evidence presented here, conservation and management of groupers in the UAE warrant the implementation of species-specific measures. PMID:26656801

  5. Fish parasites in the Arctic deep-sea: Poor diversity in pelagic fish species vs. heavy parasite load in a demersal fish

    NASA Astrophysics Data System (ADS)

    Klimpel, Sven; Palm, Harry Wilhelm; Busch, Markus Wilhelm; Kellermanns, Esra; Rückert, Sonja

    2006-07-01

    A total of 219 deep-sea fishes belonging to five families were examined for the parasite fauna and stomach contents. The demersal fish Macrourus berglax, bathypelagic Bathylagus euryops, and mesopelagic Argentina silus, Borostomias antarcticus, Chauliodus sloani, and Lampanyctus macdonaldi were caught at 243-708 m trawling depth in the Greenland and the Irminger Sea in 2002. A total of 21 different parasite species, six Digenea, one Monogenea, two Cestoda, seven Nematoda, one Acanthocephala, and four Crustacea, were found. The parasite diversity in the meso- and bathypelagic environment was less diverse in comparison to the benthal. Macrourus berglax had the highest diversity (20 species), usually carrying 4-10 different parasite species (mean 7.1), whereas Bathylagus euryops harbored up to three and Argentina silus, Borostomias antarcticus, Chauliodus sloani and Lampanyctus macdonaldi each up to two species. Most Digenea, Cestoda, Nematoda, Acanthocephala, and Crustacea are known from a wide host range. Several of the encountered parasites occurred at a very low prevalence (<10%), indicating that the studied deep-sea fishes are most probably not instrumental to complete the parasite life cycles in the area of investigation. It is suggested that the lack of nutrients in the meso- and bathypelagial limits the abundance of potential first intermediate hosts of nematodes and cestodes, resulting in low infestation rates even of widely distributed, non-specific species. In contrast, the higher biomass in the benthic deep-sea environment increases the availability of potential intermediate hosts, such as molluscs for the digeneans, resulting in increased parasite diversity. Because many deep-sea fish have a generalistic feeding behavior, the observed different parasite diversity reflects a different depth range of the fish and not necessarily a specific fish feeding ecology.

  6. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species.

    PubMed

    Holbrook, Sally J; Schmitt, Russell J; Messmer, Vanessa; Brooks, Andrew J; Srinivasan, Maya; Munday, Philip L; Jones, Geoffrey P

    2015-01-01

    Coral reef ecosystems are under a variety of threats from global change and anthropogenic disturbances that are reducing the number and type of coral species on reefs. Coral reefs support upwards of one third of all marine species of fish, so the loss of coral habitat may have substantial consequences to local fish diversity. We posit that the effects of habitat degradation will be most severe in coral regions with highest biodiversity of fishes due to greater specialization by fishes for particular coral habitats. Our novel approach to this important but untested hypothesis was to conduct the same field experiment at three geographic locations across the Indo-Pacific biodiversity gradient (Papua New Guinea; Great Barrier Reef, Australia; French Polynesia). Specifically, we experimentally explored whether the response of local fish communities to identical changes in diversity of habitat-providing corals was independent of the size of the regional species pool of fishes. We found that the proportional reduction (sensitivity) in fish biodiversity to loss of coral diversity was greater for regions with larger background species pools, reflecting variation in the degree of habitat specialization of fishes across the Indo-Pacific diversity gradient. This result implies that habitat-associated fish in diversity hotspots are at greater risk of local extinction to a given loss of habitat diversity compared to regions with lower species richness. This mechanism, related to the positive relationship between habitat specialization and regional biodiversity, and the elevated extinction risk this poses for biodiversity hotspots, may apply to species in other types of ecosystems. PMID:25970588

  7. Observations of the distributions of five fish species in a small Appalachian stream

    USGS Publications Warehouse

    Larson, Gary L.; Hoffman, Robert L.; Moore, S.E.

    2002-01-01

    The notion has been growing that resident stream fishes exhibit a greater capacity for movement than was previously thought. In this study, we recorded the distributions of four resident fish species (longnose dace Rhinichthys cataractae, blacknose dace R. atratulus, mottled sculpin Cottus bairdi, and rainbow trout Oncorhynchus mykiss) and one nonresident species (central stoneroller Campostoma anomalum) in Rock Creek, a small tributary of Cosby Creek in Great Smoky Mountains National Park, over the period 1979a??1995. During this study, 1,998 individuals of resident species were collected from stream sections considered to be within a common area of distribution for each species. Forty-five individuals of resident and nonresident species were captured upstream of these areas, and eight of these fish were considered to be larger than individuals considered typical for each species. Small mammal dispersal theory concepts were used to classify and describe fish movements outside of common areas of distribution. These movements were identified as important in maintaining population connectivity within stream drainages, contributing to reducing the potential for local extinctions of populations and to the recolonization of unoccupied habitats. This study highlights the need for continued study of fish movements in stream drainages and for development of appropriate resource management strategies based partly on the spatial dynamics of fish populations and communities.

  8. The Abundance of Pink-Pigmented Facultative Methylotrophs in the Root Zone of Plant Species in Invaded Coastal Sage Scrub Habitat

    PubMed Central

    Irvine, Irina C.; Brigham, Christy A.; Suding, Katharine N.; Martiny, Jennifer B. H.

    2012-01-01

    Pink-pigmented facultative methylotrophic bacteria (PPFMs) are associated with the roots, leaves and seeds of most terrestrial plants and utilize volatile C1 compounds such as methanol generated by growing plants during cell division. PPFMs have been well studied in agricultural systems due to their importance in crop seed germination, yield, pathogen resistance and drought stress tolerance. In contrast, little is known about the PPFM abundance and diversity in natural ecosystems, let alone their interactions with non-crop species. Here we surveyed PPFM abundance in the root zone soil of 5 native and 5 invasive plant species along ten invasion gradients in Southern California coastal sage scrub habitat. PPFMs were present in every soil sample and ranged in abundance from 102 to 105 CFU/g dry soil. This abundance varied significantly among plant species. PPFM abundance was 50% higher in the root zones of annual or biennial species (many invasives) than perennial species (all natives). Further, PPFM abundance appears to be influenced by the plant community beyond the root zone; pure stands of either native or invasive species had 50% more PPFMs than mixed species stands. In sum, PPFM abundance in the root zone of coastal sage scrub plants is influenced by both the immediate and surrounding plant communities. The results also suggest that PPFMs are a good target for future work on plant-microorganism feedbacks in natural ecosystems. PMID:22383990

  9. DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes

    PubMed Central

    Landi, Monica; Dimech, Mark; Arculeo, Marco; Biondo, Girolama; Martins, Rogelia; Carneiro, Miguel; Carvalho, Gary Robert; Brutto, Sabrina Lo; Costa, Filipe O.

    2014-01-01

    Background DNA barcoding enhances the prospects for species-level identifications globally using a standardized and authenticated DNA-based approach. Reference libraries comprising validated DNA barcodes (COI) constitute robust datasets for testing query sequences, providing considerable utility to identify marine fish and other organisms. Here we test the feasibility of using DNA barcoding to assign species to tissue samples from fish collected in the central Mediterranean Sea, a major contributor to the European marine ichthyofaunal diversity. Methodology/Principal Findings A dataset of 1278 DNA barcodes, representing 218 marine fish species, was used to test the utility of DNA barcodes to assign species from query sequences. We tested query sequences against 1) a reference library of ranked DNA barcodes from the neighbouring North East Atlantic, and 2) the public databases BOLD and GenBank. In the first case, a reference library comprising DNA barcodes with reliability grades for 146 fish species was used as diagnostic dataset to screen 486 query DNA sequences from fish specimens collected in the central basin of the Mediterranean Sea. Of all query sequences suitable for comparisons 98% were unambiguously confirmed through complete match with reference DNA barcodes. In the second case, it was possible to assign species to 83% (BOLD-IDS) and 72% (GenBank) of the sequences from the Mediterranean. Relatively high intraspecific genetic distances were found in 7 species (2.2%–18.74%), most of them of high commercial relevance, suggesting possible cryptic species. Conclusion/Significance We emphasize the discriminatory power of COI barcodes and their application to cases requiring species level resolution starting from query sequences. Results highlight the value of public reference libraries of reliability grade-annotated DNA barcodes, to identify species from different geographical origins. The ability to assign species with high precision from DNA samples of

  10. Species richness and patterns of invasion in plants, birds, and fishes in the United States

    USGS Publications Warehouse

    Stohlgren, T.J.; Barnett, D.; Flather, C.; Fuller, P.; Peterjohn, B.; Kartesz, J.; Master, L.L.

    2006-01-01

    We quantified broad-scale patterns of species richness and species density (mean # species/km2) for native and non-indigenous plants, birds, and fishes in the continental USA and Hawaii. We hypothesized that the species density of native and non-indigenous taxa would generally decrease in northern latitudes and higher elevations following declines in potential evapotranspiration, mean temperature, and precipitation. County data on plants (n = 3004 counties) and birds (n=3074 counties), and drainage (6 HUC) data on fishes (n = 328 drainages) showed that the densities of native and non-indigenous species were strongly positively correlated for plant species (r = 0.86, P < 0.0001), bird species (r = 0.93, P<0.0001), and fish species (r = 0.41, P<0.0001). Multiple regression models showed that the densities of native plant and bird species could be strongly predicted (adj. R2 = 0.66 in both models) at county levels, but fish species densities were less predictable at drainage levels (adj. R2 = 0.31, P<0.0001). Similarly, non-indigenous plant and bird species densities were strongly predictable (adj. R2 = 0.84 and 0.91 respectively), but non-indigenous fish species density was less predictable (adj. R2 = 0.38). County level hotspots of native and non-indigenous plants, birds, and fishes were located in low elevation areas close to the coast with high precipitation and productivity (vegetation carbon). We show that (1) native species richness can be moderately well predicted with abiotic factors; (2) human populations have tended to settle in areas rich in native species; and (3) the richness and density of non-indigenous plant, bird, and fish species can be accurately predicted from biotic and abiotic factors largely because they are positively correlated to native species densities. We conclude that while humans facilitate the initial establishment, invasions of non-indigenous species, the spread and subsequent distributions of non-indigenous species may be controlled

  11. Niche Overlap of Congeneric Invaders Supports a Single-Species Hypothesis and Provides Insight into Future Invasion Risk: Implications for Global Management of the Bactrocera dorsalis Complex

    PubMed Central

    Hill, Matthew P.; Terblanche, John S.

    2014-01-01

    Background The invasive fruit fly, Bactrocera invadens, has expanded its range rapidly over the past 10 years. Here we aimed to determine if the recent range expansion of Bactrocera invadens into southern Africa can be better understood through niche exploration tools, ecological niche models (ENMs), and through incorporating information about Bactrocera dorsalis s.s., a putative conspecific species from Asia. We test for niche overlap of environmental variables between Bactrocera invadens and Bactrocera dorsalis s.s. as well as two other putative conspecific species, Bactrocera philippinensis and B. papayae. We examine overlap and similarity in the geographical expression of each species’ realised niche through reciprocal distribution models between Africa and Asia. We explore different geographical backgrounds, environmental variables and model complexity with multiple and single Bactrocera species hypotheses in an attempt to predict the recent range expansion of B. invadens into northern parts of South Africa. Principal Findings Bactrocera invadens has a high degree of niche overlap with B. dorsalis s.s. (and B. philippinensis and B. papayae). Ecological niche models built for Bactrocera dorsalis s.s. have high transferability to describe the range of B. invadens, and B. invadens is able to project to the core range of B. dorsalis s.s. The ENMs of both Bactrocera dorsalis and B. dorsalis combined with B. philipenesis and B. papayae have significantly higher predictive ability to capture the distribution points in South Africa than for B. invadens alone. Conclusions/Significance Consistent with other studies proposing these Bactrocera species as conspecific, niche similarity and overlap between these species is high. Considering these other Bactrocera dorsalis complex species simultaneously better describes the range expansion and invasion potential of B. invadens in South Africa. We suggest that these species should be considered the same–at least

  12. Discriminant classification of different fish-species backscattering

    NASA Astrophysics Data System (ADS)

    Zhang, Qiao; Xu, Feng; Liu, Yin; Zhang, Chun

    2012-11-01

    The complex structure of fish and multispecies composition complicate the analysis of acoustic data. Consequently, it is difficult to obtain a highly accurate rate of classification by using current approaches. This paper introduces two discriminating methods: the adaptive segmentation temporal centroid method and the wavelet packet multi-scale information entropy method. To verify and compare these two methods, an ex situ experiment has been performed with three kinds of fish: Crucian carp (Carassius auratus), Yellow-headed catfish (Pelteobagrus fulvidraco) and Bluntnose black bream (Megalobrama amblycephale). The backscattering signals of these fishes are obtained. Then the temporal centroid in the divided sub-segmentation of the backscattering envelope is calculated, and the multi-scale information entropy of the wavelet packet decomposition in different frequency bands is extracted. Finally, three kinds of fish are successfully classified by using a BP neural network. The result shows that the adaptive segmentation temporal centroid method is 4% more accurate than the wavelet packet multi-scale information entropy method.

  13. Using a Popular Pet Fish Species to Study Territorial Behaviour

    ERIC Educational Resources Information Center

    Abante, Maria E.

    2005-01-01

    The colourful, vigorous territorial display behaviour of the Siamese fighting fish, "Betta splendens", has great appeal for both pet enthusiasts and animal behaviourists. Their beauty, longevity, easy maintenance and rearing make them a popular pet and an ideal science laboratory specimen. This investigation utilises "B. splendens" to test for the…

  14. Current and future assisted reproductive technologies for fish species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Food and Agriculture Organization of the United Nations (FAO) estimates that in 2012 aquaculture production of fish will meet or exceed that of the capture fisheries for the first time. Thus, we have just turned the corner from a predominantly hunting gathering approach to meeting our nutrition...

  15. Effect of species, life stage, and water temperature on the toxicity of hydrogen peroxide to fish

    USGS Publications Warehouse

    Rach, J.J.; Schreier, T.M.; Howe, G.E.; Redman, S.D.

    1997-01-01

    Hydrogen peroxide is a drug of low regulatory priority status that is effective in treating fish and fish eggs infected by fungi. However, only limited information is available to guide fish culturists in administering hydrogen peroxide to diseased fish. Laboratory tests were conducted to determine (1) the sensitivity of brown trout Salmo trutta, lake trout Salvelinus namaycush, fathead minnow Pimephales promelas, walleye Stizostedion vitreum, channel catfish Ictalurus punctatus, and bluegill Lepomis, machrochirus to hydrogen peroxide treatments; (2) the sensitivity of various life stages of rainbow trout Oncorhynchus mykiss to hydrogen peroxide treatments; and (3) the effect of water temperature on the acute toxicity of hydrogen peroxide to three fish species. Fish were exposed to hydrogen peroxide concentrations ranging from 100 to 5,000 mu L/L (ppm) for 15-min or 45-min treatments every other day for four consecutive treatments to determine the sensitivity of various species and life stages of fish. Except for walleye, most species of fish tested (less than or equal to 2 g) tolerated hydrogen peroxide of 1,000 mu L/L or greater. Walleyes were sensitive to hydrogen peroxide concentrations as low as 100 mu L/L. A correlation was found between the toxicity of hydrogen peroxide and the life stages of rainbow trout; larger fish were more sensitive. Generally, the toxicity of hydrogen peroxide increased for all species as water temperature increased. The results of these experiments demonstrate that it is important to consider the effects of species, life stage, and water temperature when conducting hydrogen peroxide treatments.

  16. Occurrence and abundance of anisakid nematode larvae in five species of fish from southern Australian waters.

    PubMed

    Shamsi, Shokoofeh; Eisenbarth, Albert; Saptarshi, Shruti; Beveridge, Ian; Gasser, Robin B; Lopata, Andreas L

    2011-04-01

    The aim of the present study was to conduct, in southern Australian waters, a preliminary epidemiological survey of five commercially significant species of fish (yellow-eye mullet, tiger flathead, sand flathead, pilchard and king fish) for infections with anisakid nematodes larvae using a combined morphological-molecular approach. With the exception of king fish, which was farmed and fed commercial pellets, all other species were infected with at least one species of anisakid nematode, with each individual tiger flathead examined being infected. Five morphotypes, including Anisakis, Contracaecum type I and II and Hysterothylacium type IV and VIII, were defined genetically using mutation scanning and targeted sequencing of the second internal transcribed spacer of nuclear ribosomal DNA. The findings of the present study provide a basis for future investigations of the genetic composition of anisakid populations in a wide range of fish hosts in Australia and for assessing their public health significance. PMID:21057811

  17. Use of fish parasite species richness indices in analyzing anthropogenically impacted coastal marine ecosystems

    NASA Astrophysics Data System (ADS)

    Dzikowski, R.; Paperna, I.; Diamant, A.

    2003-10-01

    The diversity of fish parasite life history strategies makes these species sensitive bioindicators of aquatic ecosystem health. While monoxenous (single-host) species may persist in highly perturbed, extreme environments, this is not necessarily true for heteroxenous (multiple-host) species. As many parasites possess complex life cycles and are transmitted through a chain of host species, their dependency on the latter to complete their life cycles renders them sensitive to perturbed environments. In the present study, parasite communities of grey mullet Liza aurata and Liza ramada (Mugilidae) were investigated at two Mediterranean coastal sites in northern Israel: the highly polluted Kishon Harbor (KH) and the relatively unspoiled reference site, Ma'agan Michael (MM). Both are estuarine sites in which grey mullet are one of the most common fish species. The results indicate that fish at the polluted site had significantly less trematode metacercariae than fish at the reference site. Heteroxenous gut helminths were completely absent at the polluted sampling site. Consequently, KH fish displayed lower mean parasite species richness. At the same time, KH fish mean monoxenous parasite richness was higher, although the prevalence of different monoxenous taxa was variable. Copepods had an increased prevalence while monogenean prevalence was significantly reduced at the polluted site. This variability may be attributed to the differential susceptibility of the parasites to the toxicity of different pollutants, their concentration, the exposure time and possible synergistic effects. In this study, we used the cumulative species curve model that extrapolates "true" species richness of a given habitat as a function of increasing sample size. We considered the heteroxenous and monoxenous species separately for each site, and comparison of curves yielded significant results. It is proposed to employ this approach, originally developed for estimating the "true" parasite

  18. Fish and Phytoplankton Exhibit Contrasting Temporal Species Abundance Patterns in a Dynamic North Temperate Lake

    PubMed Central

    Hansen, Gretchen J. A.; Carey, Cayelan C.

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of “core” (common occurrence and high abundance) and “occasional” (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  19. Fish and phytoplankton exhibit contrasting temporal species abundance patterns in a dynamic north temperate lake.

    PubMed

    Hansen, Gretchen J A; Carey, Cayelan C

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of "core" (common occurrence and high abundance) and "occasional" (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  20. Effect of processing conditions on trace elements in fish roe from six commercial new zealand fish species.

    PubMed

    Bekhit, Alaa El-Din A; Morton, James D; Dawson, Chris O

    2008-06-25

    The concentrations of trace elements in fish roes and the effect of processing conditions (karasumi-like or karashi mentaiko) were investigated in six commercial fish species from New Zealand. The studied elements were As, Cd, Cr, Cu, Hg, Pb, and Zn, and the roes were from the following species: chinook salmon ( Oncorhynchus tshawytscha), hoki ( Macruronus novaezelandiae), southern blue whiting ( Micromesistius australis), hake ( Merluccius australis), blue warehou ( Seriolella brama), and barracouta ( Thyrsites atun). The concentrations of As, Cd, Cr, Hg, and Pb in the roes were lower than literature values for fish muscles. Only Zn in barracouta roe and Cu in salmon roe and their products were relatively higher than the generally accepted levels in fish muscles and could be of safety concern. Hence, the consumption of barracouta and salmon roes among certain parts of the population needs to be monitored and assessed. Dry salting (karasumi-like) processing increased ( P < 0.001) the concentrations of the studied trace elements while salting fermentation (karashi mentaiko) processing tended to decrease the levels of trace elements. Fermentation may be a useful process to decrease the level of toxic trace elements. PMID:18494479

  1. Marine fronts are important fishing areas for demersal species at the Argentine Sea (Southwest Atlantic Ocean)

    NASA Astrophysics Data System (ADS)

    Alemany, Daniela; Acha, Eduardo M.; Iribarne, Oscar O.

    2014-03-01

    The high primary and secondary production associated with frontal systems attract a diversity of organisms due to high prey availability; this is why a strong relationship between fronts and pelagic fisheries has been shown worldwide. In the Argentine Sea, demersal resources are the most important, both in economical and in ecological sense; so we hypothesize that fronts are also preferred fishing areas for demersal resources. We evaluated the relationship between spatial distribution of fishing effort and oceanographic fronts, analyzing three of the most important frontal systems located in the Argentine Sea: the shelf-break front, the southern Patagonia front and the mid-shelf front. Individual vessel satellite monitoring system data (VMS; grouped by fleet type: ice-trawlers, freezer-trawlers and jigging fleet) were studied and fishing events were identified. Fishing events per area were used as a proxy of fishing effort and its spatial distribution by fleet type was visualized and analyzed with Geographic Information Systems. Oceanographic fronts were defined using polygons based on satellite chlorophyll amplitude values, and the percentage of fishing events within each polygon was calculated. Results showed a positive association between fronts and fishing activities of the different fleets, which suggests the aggregation of target species in these zones. The coupling of the freezer-trawler and jigging fleets (that operate on lower trophic level species; Macruronus magellanicus and Illex argentinus respectively) with fronts was higher than the ice-trawler fleet, targeting species of higher trophic level (Merluccius hubbsi). Marine fronts represent important fishing areas, even for demersal resources, as the distribution of fishing fleets and fishing effort are positively associated with frontal zones.

  2. Biomonitoring of polychlorinated biphenyls (PCBs) in heavily polluted aquatic environment in different fish species.

    PubMed

    Brázová, Tímea; Hanzelová, Vladimíra; Miklisová, Dana; Šalgovičová, Danka; Turčeková, L'udmila

    2012-11-01

    The distribution and concentrations of polychlorinated biphenyls (PCBs) were determined in fish species (European perch Perca fluviatilis, northern pike Esox lucius, pike perch Sander lucioperca, wels catfish Silirus glanus, common carp Cyprinus carpio, European eel Anguilla anguilla, freshwater bream Abramis brama, goldfish Carassius auratus, and roach Rutilus rutilus) in a heavily polluted water reservoir Zemplínska šírava (Slovakia). The study performed at two different time points 5 years apart (2004 and 2009) revealed serious PCB contamination of fish muscle tissue and significant interspecies as well as tissue-specific differences in PCB uptake by fish. Total PCBs broadly correlated with the trophic position of individual fish species within a food chain (P < 0.01). The concentrations were particularly high in predatory fish species, perch, pike, and pike perch (108.0, 90.1, and 113.0 mg kg(-1) lipid wt, respectively), but comparable PCB values were also found in non-predatory detrivorous freshwater bream (128.0 mg kg(-1) lipid wt). The lowest PCB values were surprisingly assessed in European eel (17.1 mg kg(-1) lipid wt). Tissue analysis showed the highest storage capacity of the liver (hepatopancreas in cyprinids) with maximum concentrations recorded found in northern pike (214.0 mg kg(-1) lipid wt) and freshwater bream (163.0 mg kg(-1) lipid wt). Negative correlations, mostly not significant, between the total PCB concentrations and fish weight were observed (P > 0.05). The study has shown that the kind of fish, its feeding habit, and specific conditions of the habitat are mutually interrelated factors that are responsible for significant variations in fish body burdens. A tendency to PCB biomagnification was also proved in some fish species of this water reservoir. PMID:22173787

  3. Genome analysis of 7 Kengyilia (Triticeae Poaceae) species with FISH and GISH

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genome composition of and genetic relationships among seven Kengyilia species were assessed using a technique of sequential FISH (fluorescence in situ hybridization) and GISH (genomic in situ hybridization). Five of these 7 species, K. kokonorica, K. rigidula, K. hirsula, K. grandiglumis, and K. th...

  4. Occurrence of three leech species (Annelida: Hirudinida) on fishes in the Kentucky River

    EPA Science Inventory

    Leeches were collected from six fish species distributed among four of ten sites sampled. The leech species observed were Myzobdella reducta (Meyer, 1940) and Myzobdella lugubris Leidy, 1851 of the family Piscicolidae and Placobdella pediculata Hemingway, 1908 of the family Gloss...

  5. USE OF SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK TO ENDANGERED AND THREATENED FISHES

    EPA Science Inventory

    Surrogate species used in toxicity assessments must be carefully selected in order to be protective of listed species. At present, the rainbow trout is considered to be an acceptable surrogate for coldwater fishes. Similarly, the fathead minnow is considered to be an acceptable s...

  6. TOXICITY OF PENTACHLOROPHENOL TO ENDANGERED AND SURROGATE FISH SPECIES

    EPA Science Inventory

    Water quality criteria (WQC) generally are based on the responses of easily cultured and tested surrogate species. Little is known about the relative sensitivity of surrogate and endangered species. The objective of this study was to compare acute and chronic (early life-stage) ...

  7. Role of self-caught fish in total fish consumption rates for recreational fishermen: Average consumption for some species exceeds allowable intake.

    PubMed

    Burger, Joanna

    2013-01-01

    Studies of fish consumption focus on recreational or subsistence fishing, on awareness and adherence to advisories, consumption patterns, and contaminants in fish. Yet the general public obtains their fish from commercial sources. In this paper I examine fish consumption patterns of recreational fishermen in New Jersey to determine: 1) consumption rates for self-caught fish and for other fish, 2) meals consumed per year, 3) average meal size, and average daily intake of mercury, and 4) variations in these parameters for commonly-consumed fish, and different methods of computing intake. Over 300 people were interviewed at fishing sites and fishing clubs along the New Jersey shore. Consumption patterns of anglers varied by species of fish. From 2 to 90 % of the anglers ate the different fish species, and between 9 and 75 % gave fish away to family or friends. Self-caught fish made up 7 to 92 % of fish diets. On average, self-caught fish were eaten for only 2 to 6 months of the year, whereas other fish (commercial or restaurant) were eaten up to 10 months a year. Anglers consumed from 5 to 36 meals of different fish a year, which resulted in intake of mercury ranging from 0.01 to 0.22 ug/kg/day. Average intake of Mako shark, swordfish, and tuna (sushi, canned tuna, self-caught tuna) exceeded the U.S. Environmental Protection Agency's oral, chronic reference dose for mercury of 0.1 ug/kg/day. However, computing intake using consumption for the highest month results in average mercury intake exceeding the reference dose for striped bass and bluefish as well. These data, and the variability in consumption patterns, have implications for risk assessors, risk managers, and health professionals. PMID:23914136

  8. Role of self-caught fish in total fish consumption rates for recreational fishermen: Average consumption for some species exceeds allowable intake

    PubMed Central

    Burger, Joanna

    2013-01-01

    Studies of fish consumption focus on recreational or subsistence fishing, on awareness and adherence to advisories, consumption patterns, and contaminants in fish. Yet the general public obtains their fish from commercial sources. In this paper I examine fish consumption patterns of recreational fishermen in New Jersey to determine: 1) consumption rates for self-caught fish and for other fish, 2) meals consumed per year, 3) average meal size, and average daily intake of mercury, and 4) variations in these parameters for commonly-consumed fish, and different methods of computing intake. Over 300 people were interviewed at fishing sites and fishing clubs along the New Jersey shore. Consumption patterns of anglers varied by species of fish. From 2 to 90 % of the anglers ate the different fish species, and between 9 and 75 % gave fish away to family or friends. Self-caught fish made up 7 to 92 % of fish diets. On average, self-caught fish were eaten for only 2 to 6 months of the year, whereas other fish (commercial or restaurant) were eaten up to 10 months a year. Anglers consumed from 5 to 36 meals of different fish a year, which resulted in intake of mercury ranging from 0.01 to 0.22 ug/kg/day. Average intake of Mako shark, swordfish, and tuna (sushi, canned tuna, self-caught tuna) exceeded the U.S. Environmental Protection Agency’s oral, chronic reference dose for mercury of 0.1 ug/kg/day. However, computing intake using consumption for the highest month results in average mercury intake exceeding the reference dose for striped bass and bluefish as well. These data, and the variability in consumption patterns, have implications for risk assessors, risk managers, and health professionals. PMID:23914136

  9. Phytoplankton IF-FISH: Species-specific labeling of cellular proteins by immunofluorescence (IF) with simultaneous species identification by fluorescence immunohybridization (FISH).

    PubMed

    Meek, Megan E; Van Dolah, Frances M

    2016-05-01

    Phytoplankton rarely occur as unialgal populations. Therefore, to study species-specific protein expression, indicative of physiological status in natural populations, methods are needed that will both assay for a protein of interest and identify the species expressing it. Here we describe a protocol for IF-FISH, a dual labeling procedure using immunofluorescence (IF) labeling of a protein of interest followed by fluorescence in situ hybridization (FISH) to identify the species expressing that protein. The protocol was developed to monitor expression of the cell cycle marker proliferating cell nuclear antigen (PCNA) in the red tide dinoflagellate, Karenia brevis, using a large subunit (LSU) rRNA probe to identify K. brevis in a mixed population of morphologically similar Karenia species. We present this protocol as proof of concept that IF-FISH can be successfully applied to phytoplankton cells. This method is widely applicable for the analysis of single-cell protein expression of any protein of interest within phytoplankton communities. PMID:26948044

  10. Host-Parasite Interactions in Some Fish Species

    PubMed Central

    Khan, R. A.

    2012-01-01

    Host-parasite interactions are complex, compounded by factors that are capable of shifting the balance in either direction. The host's age, behaviour, immunological status, and environmental change can affect the association that is beneficial to the host whereas evasion of the host's immune response favours the parasite. In fish, some infections that induce mortality are age and temperature dependent. Environmental change, especially habitat degradation by anthropogenic pollutants and oceanographic alterations induced by climatic, can influence parasitic-host interaction. The outcome of these associations will hinge on susceptibility and resistance. PMID:22900144

  11. Content of essential polyunsaturated fatty acids in three canned fish species.

    PubMed

    Gladyshev, Michail I; Sushchik, Nadezhda N; Makhutova, Olesia N; Kalachova, Galina S

    2009-05-01

    Three canned fish species--Pacific saury (Cololabis saira), Pacific herring (Clupea harengus) and Baltic sprat (Sprattus sprattus)--most common and popular in Russia, were analyzed for fatty acids. Special attention was paid to long-chain essential polyunsaturated fatty acids: eicosapentaenoic acid (20:5omega3) and docosahexaenoic acid (22:6omega3). Sums of eicosapentaenoic acid and docosahexaenoic acid in saury, herring and sprat were, on average, 2.42, 1.80 and 1.43 g/100 g product, respectively. Contents of these essential acids in all the canned fish species were found to be very high compared with many other fish reported in the available literature. All the canned fish appeared to be highly valuable products for human nutrition concerning the content of eicosapentaenoic and docosahexaenoic acids. PMID:18608541

  12. Distribution of Anisakis species larvae from fishes of the Japanese waters.

    PubMed

    Quiazon, Karl Marx A; Yoshinaga, Tomoyoshi; Ogawa, Kazuo

    2011-06-01

    Human anisakiasis is caused by the consumption of raw, marinated or undercooked fish and squid infected with nematodes of the genus Anisakis Dujardin, 1845. In view of food safety, this study was carried out to examine the distribution of Anisakis species in marine fishes within Japanese waters. Seven fish species from six localities were collected and examined for Anisakis infection. Morphological and molecular (ITS region and mtDNA cox2 gene) characterization revealed the presence of two, among the three sibling species of Anisakis simplex, viz. A. simplex sensu stricto (s.s.) and A. pegreffii. Distribution data were collated with the results from the previous researches to better understand Anisakis distribution in Japanese waters. Distributions of Anisakis species were found to be locality-specific rather than host-specific, particularly between the two major species, A. simplex s.s. and A. pegreffii. Anisakis simplex s.s. is mainly found in fishes from northern Japan to Pacific sides, whereas A. pegreffii is in fishes from the Sea of Japan to East China Sea sides. PMID:21397715

  13. Spatial predictability of juvenile fish species richness and abundance in a coral reef environment

    NASA Astrophysics Data System (ADS)

    Mellin, C.; Andréfouët, S.; Ponton, D.

    2007-12-01

    Juvenile reef fish communities represent an essential component of coral reef ecosystems in the current focus of fish population dynamics and coral reef resilience. Juvenile fish survival depends on habitat characteristics and is, following settlement, the first determinant of the number of individuals within adult populations. The goal of this study was to provide methods for mapping juvenile fish species richness and abundance into spatial domains suitable for micro and meso-scale analysis and management decisions. Generalized Linear Models predicting juvenile fish species richness and abundance were developed according to spatial and temporal environmental variables measured from 10 m up to 10 km in the southwest lagoon of New Caledonia. The statistical model was further spatially generalized using a 1.5-m resolution, independently created, remotely sensed, habitat map. This procedure revealed that : (1) spatial factors at 10 to 100-m scale explained up to 71% of variability in juvenile species richness, (2) a small improvement (75%) was gained when a combination of environmental variables at different spatial and temporal scales was used and (3) the coupling of remotely sensed data, geographical information system tools and point-based ecological data showed that the highest species richness and abundance were predicted along a narrow margin overlapping the coral reef flat and adjacent seagrass beds. Spatially explicit models of species distribution may be relevant for the management of reef communities when strong relationships exist between faunistic and environmental variables and when models are built at appropriate scales.

  14. Seasonal investigation of trace element contents in commercially valuable fish species from the Black sea, Turkey.

    PubMed

    Mendil, Durali; Demirci, Zafer; Tuzen, Mustafa; Soylak, Mustafa

    2010-03-01

    Fish species (Sarda sarda, Mulus barbatus ponticus, Trachurus trachurus and Merlangius merlangus) were collected from the Black sea, Turkey between 2008 and 2009 (spring, summer, autumn and winter). The samples were analyzed using flame and graphite furnace atomic absorption spectrometry after microwave digestion. The maximum metal concentrations were found to be as 25.5-41.4 microg/g (Fe), 17.8-25.7 microg/g (Zn), 0.28-0.64 microg/g (Pb), 0.64-0.99 microg/g (Cr), 1.3-3.6 microg/g (Mn), 1.4-1.9 microg/g (Cu), 0.18-0.35 microg/g (Cd) and 0.25-0.42 microg/g (Co) for fish species. The concentration of trace metals in samples is depended on fish species. Some species is accumulated trace metals at high ratio. Trace element levels in analyzed fish species were acceptable to human consumption at nutritional and toxic levels. The levels of lead and cadmium in fish samples were higher than the recommended legal limits. PMID:20036302

  15. Trophic niche partitioning of littoral fish species from the rocky intertidal of Helgoland, Germany

    NASA Astrophysics Data System (ADS)

    Hielscher, N. N.; Malzahn, A. M.; Diekmann, R.; Aberle, N.

    2015-12-01

    During a 3-year field study, interspecific and interannual differences in the trophic ecology of littoral fish species were investigated in the rocky intertidal of Helgoland island (North Sea). We investigated trophic niche partitioning of common coexisting littoral fish species based on a multi-tracer approach using stable isotope and fatty acids in order to show differences and similarities in resource use and feeding modes. The results of the dual-tracer approach showed clear trophic niche partitioning of the five target fish species, the goldsinny wrasse Ctenolabrus rupestris, the sand goby Pomatoschistus minutus, the painted goby Pomatoschistus pictus, the short-spined sea scorpion Myoxocephalus scorpius and the long-spined sea scorpion Taurulus bubalis. Both stable isotopes and fatty acids showed distinct differences in the trophic ecology of the studied fish species. However, the combined use of the two techniques added an additional resolution on the interannual scale. The sand goby P. minutus showed the largest trophic plasticity with a pronounced variability between years. The present data analysis provides valuable information on trophic niche partitioning of fish species in the littoral zones of Helgoland and on complex benthic food webs in general.

  16. Contaminant sensitivity of threatened and endangered fishes compared to standard surrogate species

    USGS Publications Warehouse

    Sappington, L.C.; Mayer, F.L.; Dwyer, F.J.; Buckler, D.R.; Jones, J.R.; Ellersieck, Mark R.

    2001-01-01

    Standard environmental assessment procedures are designed to protect terrestrial and aquatic species. However, it is not known if endangered species are adequately protected by these procedures. At present, toxicological data obtained from studies with surrogate test fishes are assumed to be applicable to endangered fish species, but this assumption has not been validated. Static acute toxicity tests were used to compare the sensitivity of rainbow trout, fathead minnows, and sheepshead minnows to several federally listed fishes (Apache trout, Lahontan cutthroat trout, greenback cutthroat trout, bonytail chub, Colorado pikeminnow, razorback sucker, Leon Springs pupfish, and desert pupfish). Chemicals tested included carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin. Results indicated that the surrogates and listed species were of similar sensitivity. In two cases, a listed species had a 96-h LC50 (lethal concentration to 50% of the population) that was less than one half of its corresponding surrogate. In all other cases, differences between listed and surrogate species were less than twofold. A safety factor of two would provide a conservative estimate for listed cold-water, warm-water, and euryhaline fish species.

  17. Identification of Cryptosporidium Species in Fish from Lake Geneva (Lac Léman) in France.

    PubMed

    Certad, Gabriela; Dupouy-Camet, Jean; Gantois, Nausicaa; Hammouma-Ghelboun, Ourida; Pottier, Muriel; Guyot, Karine; Benamrouz, Sadia; Osman, Marwan; Delaire, Baptiste; Creusy, Colette; Viscogliosi, Eric; Dei-Cas, Eduardo; Aliouat-Denis, Cecile Marie; Follet, Jérôme

    2015-01-01

    Cryptosporidium, a protozoan parasite that can cause severe diarrhea in a wide range of vertebrates including humans, is increasingly recognized as a parasite of a diverse range of wildlife species. However, little data are available regarding the identification of Cryptosporidium species and genotypes in wild aquatic environments, and more particularly in edible freshwater fish. To evaluate the prevalence of Cryptosporidiumspp. in fish from Lake Geneva (Lac Léman) in France, 41 entire fish and 100 fillets (cuts of fish flesh) were collected from fishery suppliers around the lake. Nested PCR using degenerate primers followed by sequence analysis was used. Five fish species were identified as potential hosts of Cryptosporidium: Salvelinus alpinus, Esox lucius, Coregonus lavaretus, Perca fluviatilis, and Rutilus rutilus. The presence of Cryptosporidium spp. was found in 15 out of 41 fish (37%), distributed as follows: 13 (87%) C. parvum, 1 (7%) C. molnari, and 1 (7%) mixed infection (C. parvum and C. molnari). C. molnari was identified in the stomach, while C. parvum was found in the stomach and intestine. C. molnari was also detected in 1 out of 100 analyzed fillets. In order to identify Cryptosporidium subtypes, sequencing of the highly polymorphic 60-kDa glycoprotein (gp60) was performed. Among the C. parvum positive samples, three gp60 subtypes were identified: IIaA15G2R1, IIaA16G2R1, and IIaA17G2R1. Histological examination confirmed the presence of potential developmental stages of C. parvum within digestive epithelial cells. These observations suggest that C. parvum is infecting fish, rather than being passively carried. Since C. parvum is a zoonotic species, fish potentially contaminated by the same subtypes found in terrestrial mammals would be an additional source of infection for humans and animals, and may also contribute to the contamination of the environment with this parasite. Moreover, the risk of human transmission is strengthened by the

  18. Identification of Cryptosporidium Species in Fish from Lake Geneva (Lac Léman) in France

    PubMed Central

    Certad, Gabriela; Dupouy-Camet, Jean; Gantois, Nausicaa; Hammouma-Ghelboun, Ourida; Pottier, Muriel; Guyot, Karine; Benamrouz, Sadia; Osman, Marwan; Delaire, Baptiste; Creusy, Colette; Viscogliosi, Eric; Aliouat-Denis, Cecile Marie; Follet, Jérôme

    2015-01-01

    Cryptosporidium, a protozoan parasite that can cause severe diarrhea in a wide range of vertebrates including humans, is increasingly recognized as a parasite of a diverse range of wildlife species. However, little data are available regarding the identification of Cryptosporidium species and genotypes in wild aquatic environments, and more particularly in edible freshwater fish. To evaluate the prevalence of Cryptosporidiumspp. in fish from Lake Geneva (Lac Léman) in France, 41 entire fish and 100 fillets (cuts of fish flesh) were collected from fishery suppliers around the lake. Nested PCR using degenerate primers followed by sequence analysis was used. Five fish species were identified as potential hosts of Cryptosporidium: Salvelinus alpinus, Esox lucius, Coregonus lavaretus, Perca fluviatilis, and Rutilus rutilus. The presence of Cryptosporidium spp. was found in 15 out of 41 fish (37%), distributed as follows: 13 (87%) C. parvum, 1 (7%) C. molnari, and 1 (7%) mixed infection (C. parvum and C. molnari). C. molnari was identified in the stomach, while C. parvum was found in the stomach and intestine. C. molnari was also detected in 1 out of 100 analyzed fillets. In order to identify Cryptosporidium subtypes, sequencing of the highly polymorphic 60-kDa glycoprotein (gp60) was performed. Among the C. parvum positive samples, three gp60 subtypes were identified: IIaA15G2R1, IIaA16G2R1, and IIaA17G2R1. Histological examination confirmed the presence of potential developmental stages of C. parvum within digestive epithelial cells. These observations suggest that C. parvum is infecting fish, rather than being passively carried. Since C. parvum is a zoonotic species, fish potentially contaminated by the same subtypes found in terrestrial mammals would be an additional source of infection for humans and animals, and may also contribute to the contamination of the environment with this parasite. Moreover, the risk of human transmission is strengthened by the

  19. Projecting future changes in distributions of pelagic fish species of Northeast Pacific shelf seas

    NASA Astrophysics Data System (ADS)

    Cheung, William W. L.; Brodeur, Richard D.; Okey, Thomas A.; Pauly, Daniel

    2015-01-01

    Marine life is being affected by changes in ocean conditions resulting from changes in climate and chemistry triggered by combustion of fossil fuels. Shifting spatial distributions of fish species is a major observed and predicted impact of these oceanographic changes, and such shifts may modify fish community structure considerably in particular locations and regions. We projected future range shifts of pelagic marine fishes of the Northeast Pacific shelf seas by 2050 relative to the present. We combined published data, expert knowledge, and pelagic fish survey data to predict current species distribution ranges of 28 fish species of the Northeast Pacific shelf seas that occur in the epipelagic zone and are well-represented in pelagic fish surveys. These represent a wide spectrum of sub-tropical to sub-polar species, with a wide range of life history characteristics. Using projected ocean condition changes from three different Earth System Models, we simulated changes in the spatial distribution of each species. We show that Northeast Pacific shelf seas may undergo considerable changes in the structure of its pelagic marine communities by mid-21st century. Ensembles of model projections suggest that the distribution centroids of the studied species are expected to shift poleward at an average rate of 30.1 ± 2.34 (S.E.) km decade-1 under the SRES A2 scenario from 2000 to 2050. The projected species range shifts result in a high rate of range expansion of this group of species into the Gulf of Alaska and the Bering Sea. Rate of range contraction of these species is highest at the Aleutian Islands, and in the California Current Large Marine Ecosystem. We also predict increasing dominance of warmer water species in all regions. The projected changes in species assemblages may have large ecological and socio-economic implications through mismatches of co-evolved species, unexpected trophic effects, and shifts of fishing grounds. These results provide hypotheses of

  20. Salinity and temperature tolerance of an emergent alien species, the Amazon fish Astronotus ocellatus

    USGS Publications Warehouse

    Gutierrel, Silvia M M; Schofield, Pam; Prodocimo, Viviane

    2016-01-01

    Astronotus ocellatus (oscar), is native to the Amazon basin and, although it has been introduced to many countries, little is known regarding its tolerances for salinity and temperature. In this report, we provide data on the tolerance of A. ocellatus to abrupt and gradual changes in salinity, its high and low temperature tolerance, and information on how salinity, temperature, and fish size interact to affect survival. Fish were able to survive abrupt transfer to salinities as high as 16 ppt with no mortality. When salinity change was gradual (2 ppt/day), fish in the warm-temperature experiment (28°C) survived longer than fish in the cool-temperature experiment (18°C). Larger fish survived longer than smaller ones at the higher salinities when the temperature was warm, but when the temperature was cool fish size had little effect on survival. In the temperature-tolerance experiments, fish survived from 9 to 41°C for short periods of time. Overall, the species showed a wide range of temperature and salinity tolerance. Thus, in spite of the tropical freshwater origin of this species, physiological stress is not likely to hinder its dispersal to brackish waters, especially when temperatures are warm.

  1. Trace metals health risk appraisal in fish species of Arabian Sea.

    PubMed

    Yasmeen, Kousar; Mirza, Muhammad Aslam; Khan, Namra A; Kausar, Nazish; Rehman, Atta-Ur; Hanif, Muddasir

    2016-01-01

    Fish is a vital food for humans and many animals. We report an environmental monitoring study to assess the trace metals in fish species caught from Arabian Sea and commercially available in the coastal city Karachi, Pakistan. Heavy metals such as copper, iron, lead and cadmium were determined in the skin, fillet and heart of the fish species Pampus argenteus, Epinephelus chlorostigma, Rachycentron canadum, Scomberomorus commerson, Johnius belangerii, Labeo rohita, Lutjanus argentimaculatus, Trachinotus blochii, Pomadsys olivaceum and Acanthopagrus berda by the atomic absorption spectrophotometer. The concentration (mg kg(-1), dry weight) range was: Cd (0.00-0.041), Cu (0.006-0.189), Fe (0.413-4.952) and Pb (0.00-0.569). Cadmium, copper and iron levels were below the tolerable limits whereas concentration of lead in the skins of S. commerson, E. chlorostigma, J. belangerii, A. berda; L. argentimaculatus, fillets of J. belangerii, E. chlorostigma and in the heart of J. belangerii exceeded the recommended limits. Therefore fish skin should be discouraged as food for humans or animals. The results indicate that a number of fish species have higher concentration of heavy metals dangerous for human health. Since the fish P. olivaceum (Dhotar) has the lowest level of trace metals therefore we recommend it for breeding and human consumption. PMID:27386308

  2. Underappreciated species in ecology: "ugly fish" in the northwest Atlantic Ocean.

    PubMed

    Link, Jason S

    2007-10-01

    Species shifts and replacements are common in ecological studies. Observations thereof serve as the impetus for many ecological endeavors. Many of the species now known to dominate ecosystem functioning were largely ignored until studies of those underappreciated species elucidated their critical roles. Recognizing the potential importance of underappreciated species has implications for functional redundancies in ecosystems and should alter our approach to long-term monitoring. One example of an applied ecological system containing species shifts, underappreciated species, and potential changes in functional redundancies is the topic of fisheries. The demersal component of many fish communities usually consists of high-profile and commercially valuable species that are targets of fisheries, plus a diverse group of lesser known species that have minimal commercial value and focus. Yet ecologically these traditionally nontargeted species are often a major biomass sink in marine ecosystems and can also be critical in the functioning of bentho-demersal food webs. I examined the biomass trajectories of several species of skates, cottids, lophiids, anarhichadids, zooarcids, and similar species in the northeast U.S. Atlantic ecosystem to determine whether their relative abundance has changed across the past four decades. Distribution and stomach contents of these species were also evaluated over time to further elucidate the relative importance of these species. Landings of these underappreciated bentho-demersal fish were also examined in comparison to those species that historically have been commercially targeted. Of particular emphasis was the evaluation of evidence for sequential stock depletion and the ramifications for functional redundancy for this ecosystem. Results indicate that some of these fish species are now the dominant piscivores, benthivores, and scavengers in this ecosystem. These formerly under-studied species generally have either maintained a

  3. Bed disturbance via foraging fish increases bedload transport during subsequent high flows and is controlled by fish size and species

    NASA Astrophysics Data System (ADS)

    Pledger, A. G.; Rice, S. P.; Millett, J.

    2016-01-01

    Benthic foraging by fish can modify the nature and rates of fine sediment accrual and the structure and topography of coarse-grained fluvial substrates, with the potential to alter bed material characteristics, particle entrainment thresholds, and bedload transport fluxes. However, knowledge of what controls the nature, extent, and intensity of benthic foraging and the consequent influence of these controls on geomorphic impact remain rudimentary. An ex-situ experiment utilising Barbel Barbus barbus and Chub Leuciscus cephalus extended previous work by considering the role of fish size and species as controls of sediment disturbance by foraging and the implications for bed material characteristics and bedload transport. In a laboratory flume, changes in bed microtopography and structure were measured when a water-worked bed of 5.6-22.6 mm gravels was exposed to four size classes of Barbel (4-5″, 5-6″, 6-8″, 8-10″ in length) and a single size class of Chub (8-10″). In line with other studies that have investigated animal size as a control of zoogeomorphic agency, increasing the size of Barbel had a significant effect on measured disturbance and transport metrics. Specifically, the area of disturbed substrate, foraging depth, and the fish's impact on microtopographic roughness and imbrication all increased as a function of fish size. In a comparison of the foraging effects of like-sized Barbel and Chub, 8-10″ in length, Barbel foraged a larger area of the test bed and had a greater impact on microtopographic roughness and sediment structure. Relative to water-worked beds that were not foraged, bed conditioning by both species was associated with increased bedload transport during the subsequent application of high flows. However, the bedload flux after foraging by Barbel, which is a specialist benthivore, was 150% higher than that following foraging by Chub, which feed opportunistically from the bed, and the total transported mass of sediment was 98

  4. Fish species substitution and misnaming in South Africa: An economic, safety and sustainability conundrum revisited.

    PubMed

    Cawthorn, Donna-Mareè; Duncan, John; Kastern, Chris; Francis, Junaid; Hoffman, Louwrens C

    2015-10-15

    While fish species mislabelling has emerged as a global problem, the tracking of improvements or deteriorations in seafood trading practices is challenging without a consistent basis for monitoring. The aim of this study was to develop a robust, repeatable species authentication protocol that could be used to benchmark the current and future incidences of fish mislabelling in South Africa. Using this approach, 149 fish samples collected from restaurants and retailers in three provinces (KwaZulu-Natal, Western Cape and Gauteng) were identified using DNA barcoding, supplemented in certain cases with mitochondrial control region sequencing. Overall, 18% of samples were incorrectly described in terms of species, with similar misrepresentation rates in restaurants (18%) and retail outlets (19%). While there appears to be some improvement in the transparency of local seafood marketing compared to previous studies, the results remain of concern and signal the need for enhanced seafood labelling regulations, monitoring and law enforcement. PMID:25952855

  5. Metals in Some Edible Fish and Shrimp Species Collected in Dry Season from Subarnarekha River, India.

    PubMed

    Giri, Soma; Singh, Abhay Kumar

    2015-08-01

    The concentration of As, Cd, Cu, Fe, Pb, Ni, Zn, Cr, Co and Sr were determined in five fish and one shrimp species collected from the Subarnarekha River during pre-monsoon season using inductively coupled plasma-mass spectrometry for a risk assessment and source apportionment study. Concentrations of metals in the fish and shrimp exceeded the recommended food standards for As, Cu, Ni, Cd and Zn in many samples. Principal component analysis suggested both innate and anthropogenic activities as contributing sources of metal in the fish and shrimp. The calculated target hazard quotients and hazard indices indicated that high concentrations of metals in some species at some locations present an appreciable risk to the health of consumers of these species. PMID:26058722

  6. [Bycatch fish species from shrimp industrial fishery in the Gulf of California, Mexico].

    PubMed

    López-Martínez, Juana; Herrera-Valdivia, Eloisa; Rodríguez-Romero, Jesús; Hernández-Vázquez, Sergio

    2010-09-01

    Bycatch fish species from shrimp industrial fishery in the Gulf of California, Mexico. The shrimp fishery in the Gulf of California is one the most important activities of revenue and employment for communities. Nevertheless, this fishery has also created a large bycatch problem, principally fish. To asses this issue, a group of observers were placed on board the industrial shrimp fleet and evaluated the Eastern side of the Gulf during 2004 and 2005. Studies consisted on 20kg samples of the capture for each trawl, and made possible a systematic list of species for this geographic area. Fish represented 70% of the capture. A total of 51 101 fish were collected, belonging to two classes, 20 orders, 65 families, 127 genera, and 241 species. The order Perciformes was the most diverse with 31 families, 78 genera, and 158 species. The best represented families by number of species were: Sciaenidae (34) and Paralichthyidae (18) and Haemulidae and Carangidae (16 each). The best represented genera in number of species were Symphurus (nine) and Diplectrum and Cynoscion (six); other important genera were Larimus and Porichthys with five species each. The best represented species in number were Syacium ovale, Pseudupeneus grandisquamis, Haemulopsis nitidos, Diplectrum pacificum, Synodus scituliceps, Balistes polylepis, Eucinostomus currani, Eucinostomus gracilis, Porichthys analis, Chloroscombrus orqueta, Selene peruviana, Orthopristis reddingi, Etropus crossotus, Scorpaena sonorae and Urobatis halleri. The number of recorded species is notably high, compared with demersal fauna of other areas of the Mexican Pacific, such as Gulf of Tehuantepec (178), Nayarit, Michoacán, Guerrero (174, 120 and 166), Jalisco and Colima (161 species), and those of the Western coast of the Baja California Peninsula (220 species). PMID:20737847

  7. Mercury and selenium levels in 19 species of saltwater fish from New Jersey as a function of species, size, and season.

    PubMed

    Burger, Joanna; Gochfeld, Michael

    2011-03-15

    There are few data on risks to biota and humans from mercury levels in saltwater fish. This paper examines mercury and selenium levels in muscle of 19 species of fish caught by recreational fisherfolk off the New Jersey shore, as a function of species of fish, size, and season, and risk of mercury to consumers. Average mercury levels ranged from 0.01 ppm (wet weight) (Menhaden Brevoortia tyrannus) to 1.83 ppm (Mako Shark Isurus oxyrinchus). There were four categories of mercury levels: very high (only Mako), high (averaging 0.3-0.5 ppm, 3 species), medium (0.14-0.20 ppm, 10 species), and low (below 0.13 ppm, 5 species). Average selenium levels for the fish species ranged from 0.18 ppm to 0.58 ppm, and had lower variability than mercury (coefficient of variation=38.3 vs 69.1%), consistent with homeostatic regulation of this essential element. The correlation between mercury and selenium was significantly positive for five and negative for two species. Mercury levels showed significant positive correlations with fish size for ten species. Size was the best predictor of mercury levels. Selenium showed no consistent relationship to fish length. Over half of the fish species had some individual fish with mercury levels over 0.3 ppm, and a third had fish with levels over 0.5 ppm, levels that pose a human health risk for high end consumers. Conversely several fish species had no individuals above 0.5 ppm, and few above 0.3 ppm, suggesting that people who eat fish frequently, can reduce their risk from mercury by selecting which species (and which size) to consume. Overall, with the exception of shark, Bluefin Tuna (Thunnus thynnus), Bluefish (Pomatomus saltatrix) and Striped Bass (Morone saxatilis), the species sampled are generally medium to low in mercury concentration. Selenium:mercury molar ratios were generally above 1:1, except for the Mako shark. PMID:21292311

  8. Hierarchical faunal filters: An approach to assessing effects of habitat and nonnative species on native fishes

    USGS Publications Warehouse

    Quist, M.C.; Rahel, F.J.; Hubert, W.A.

    2005-01-01

    Understanding factors related to the occurrence of species across multiple spatial and temporal scales is critical to the conservation and management of native fishes, especially for those species at the edge of their natural distribution. We used the concept of hierarchical faunal filters to provide a framework for investigating the influence of habitat characteristics and normative piscivores on the occurrence of 10 native fishes in streams of the North Platte River watershed in Wyoming. Three faunal filters were developed for each species: (i) large-scale biogeographic, (ii) local abiotic, and (iii) biotic. The large-scale biogeographic filter, composed of elevation and stream-size thresholds, was used to determine the boundaries within which each species might be expected to occur. Then, a local abiotic filter (i.e., habitat associations), developed using binary logistic-regression analysis, estimated the probability of occurrence of each species from features such as maximum depth, substrate composition, submergent aquatic vegetation, woody debris, and channel morphology (e.g., amount of pool habitat). Lastly, a biotic faunal filter was developed using binary logistic regression to estimate the probability of occurrence of each species relative to the abundance of nonnative piscivores in a reach. Conceptualising fish assemblages within a framework of hierarchical faunal filters is simple and logical, helps direct conservation and management activities, and provides important information on the ecology of fishes in the western Great Plains of North America. ?? Blackwell Munksgaard, 2004.

  9. [Dietary composition and food competition of six main fish species in rocky reef habitat off Gouqi Island].

    PubMed

    Wang, Kai; Zhang, Shou-Yu; Wang, Zhen-Hua; Zhao, Jing; Xu, Min; Lin, Jun

    2012-02-01

    Based on the monthly investigation data of fish resources in the rocky reef habitat off Gouqi Island from March 2009 to February 2010, this paper studied the dietary composition of three native fish species (Sebasticus marmoratus, Hexagrammos otakii and Hexagrammos agrammus) and three non-native fish species (Lateolabrax japonica, Nibea albiflora and Larimichthys polyactis). The analysis of gut content indicated that the main prey items of these six dominant fish species were Caprellidae, Gammaridea, juvenile S. marmoratus, Engraulis japonicas and Acetes chinensis and the dietary composition of each of the 6 fish species had obvious seasonal variation. There was an intense food competition between native species H. otakii and H. agrammus in autumn, between non-native species N. albiflora and L. polyactis in summer, between non-native species N. albiflora and native species S. marmoratus in autumn, and between non-native species N. albiflora and native species H. otakii in winter. It was suggested the non-native species N. albiflora was the key species in the food competition among the six dominant fish species in this rocky reef habitat, and thus the feeding behaviors of these six fish species could have definite effects on the resource capacity of juvenile S. marmoratus. PMID:22586984

  10. Induction of CYP1A in marine fish species from the Gulf of Mexico

    SciTech Connect

    Willett, K.L.; McDonald, S.; Narasimhan, T.R.; Connor, K.; Safe, S.; Kennicutt, M.C.

    1994-12-31

    Ethoxyresorufin O-deethylase (EROD) and aryl hydrocarbon hydroxylase (AHH) activities in over twenty species of fish, invertebrates, and fauna were used as biomarkers of exposure to polynuclear aromatic hydrocarbons (PAHs) in the Gulf of Mexico. The highest AHH and EROD activities in fish were detected in pinfish, tile, flounder, and hardhead catfish. In contrast, minimal to non-detectable induction was observed in invertebrates. Analysis of induction results showed that with the exception of a few species, there was a linear correlation between the induction of EROD vs AHH activity suggesting that ethoxyresorufin and benzo[a]pyrene serve as comparable substrates for CYP1A. In contrast, AHH activity was not induced in either hardhead catfish or lizard fish; whereas, the levels of EROD activity varied from 4.0 to 155 pmol/min/mg. These results indicate that there is some species-dependent variability in the catalytic activity of CYP1A protein in marine fish species, and that more reliable indicators of exposure to PAHs such as CYP1A mRNA levels should also be utilized in environmental monitoring studies. The results of Northern analysis of CYP1A mRNA levels in fish will be presented.

  11. Multi-scale approach for predicting fish species distributions across coral reef seascapes.

    PubMed

    Pittman, Simon J; Brown, Kerry A

    2011-01-01

    Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5-300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided 'outstanding' model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided 'outstanding' model predictions for two of five species, with the remaining three models considered 'excellent' (AUC = 0.8-0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support conservation

  12. Multi-Scale Approach for Predicting Fish Species Distributions across Coral Reef Seascapes

    PubMed Central

    Pittman, Simon J.; Brown, Kerry A.

    2011-01-01

    Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5–300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided ‘outstanding’ model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided ‘outstanding’ model predictions for two of five species, with the remaining three models considered ‘excellent’ (AUC = 0.8–0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support

  13. Digenean species diversity in teleost fishes from the Gulf of Gabes, Tunisia (Western Mediterranean)

    PubMed Central

    Derbel, H.; Châari, M.; Neifar, L.

    2012-01-01

    This study is the first attempt to survey the diversity of fish digeneans in the Gulf of Gabes (southern coast of Tunisia). A total of 779 fishes belonging to 32 species were sampled. 53 species of Digenea belonging to 15 families were recorded. Among these species, 24 are reported for the first time from the coast of Tunisia. We report one new host record, Lecithochirium sp. from Sardinella aurita. The Hemiuridae is the dominant family. A host-parasite list is presented with the information on the prevalence, abundance and mean intensity of each species collected. The diversity of Digenea is compared with other localities in the Mediterranean Sea and the northern east of Tunisia. The Gulf of Gabes shows the lowest diversity linked to the anthropogenic activities and impact of exotic species. The use of Digenea as indicators of the state of the ecosystem is discussed. PMID:22550623

  14. Experimental infection of Aphanomyces invadans and susceptibility in seven species of tropical fish

    PubMed Central

    Afzali, Seyedeh F.; Mohd Daud, Hassan Hj.; Sharifpour, Issa; Afsharnasab, Mohammad; Shankar, Shiv

    2015-01-01

    Aim: Epizootic ulcerative syndrome (EUS) causes by aquatic oomycete fungus, Aphanomyces invadans is a dangerous fish disease of a wide range of fresh and brackish water, wild and farmed fish throughout the world. The objective of the present study was to determine the susceptibility of a number of tropical fish species to the EUS and compare the severity of infection between experimental groups. Materials and Methods: Snakehead, Channa striata (Bloch, 1793); snakeskin gourami, Trichopodus pectoralis (Regan, 1910); koi carp, Cyprinus carpio (Linnaeus, 1758); broadhead catfish, Clarias macrocephalus (Günther, 1864); goldfish, Carassius auratus (Linnaeus, 1758); climbing perch, Anabas testudineus (Bloch, 1792); and Nile tilapia, Oreochromis niloticus (Linnaeus, 1758) were challenged by intramuscular injection using zoospores of Aphanomyces invadans (NJM9701). The infected fish skins and muscles were examined for EUS histopathological characteristics, and the results on the severity of lesions and mortality were analyzed using SPSS program. Results: All zoospore-injected fish were shown to be susceptible to the EUS infection except Nile tilapia. Although, the general histopathological pattern was similar in the zoospore-injected group, but there were some variation in granulomatous reaction, that is the presence or absence of giant cells, and time of mortality were detected. The result of statistical analysis showed that there was a significant difference between species, (c2=145.11 and p<0.01). Conclusion: Gourami, koi carp, and catfish were demonstrated to be highly susceptible while goldfish and climbing perch were found to be moderately susceptible to the EUS infection. These findings suggested that the cellular response of fish to mycotic infection and granulomatous reaction varied in different fish species, which could not be an indicator of susceptibility or resistant to the EUS itself, although it was shown that the granulation rate and the level of maturity

  15. Co-invaders: The effects of alien parasites on native hosts

    PubMed Central

    Lymbery, Alan J.; Morine, Mikayla; Kanani, Hosna Gholipour; Beatty, Stephen J.; Morgan, David L.

    2014-01-01

    We define co-introduced parasites as those which have been transported with an alien host to a new locality, outside of their natural range, and co-invading parasites as those which have been co-introduced and then spread to new, native hosts. Of 98 published studies of co-introductions, over 50% of hosts were freshwater fishes and 49% of parasites were helminths. Although we would expect parasites with simple, direct life cycles to be much more likely to be introduced and establish in a new locality, a substantial proportion (36%) of co-introductions were of parasites with an indirect life cycle. Seventy-eight per cent of co-introduced parasites were found in native host species and can therefore be classed as co-invaders. Host switching was equally common among parasites with direct and indirect life cycles. The magnitude of the threat posed to native species by co-invaders will depend, among other things, on parasite virulence. In 16 cases where co-introduced parasites have switched to native hosts and information was available on relative virulence, 14 (85%) were more virulent in native hosts than in the co-introduced alien host. We argue that this does not necessarily support the naïve host theory that co-invading parasites will have greater pathogenic effects in native hosts with which they have no coevolutionary history, but may instead be a consequence of the greater likelihood for parasites with lower virulence in their natural host to be co-introduced. PMID:25180161

  16. Genetic diversity and species diversity of stream fishes covary across a land-use gradient

    USGS Publications Warehouse

    Blum, M.J.; Bagley, M.J.; Walters, D.M.; Jackson, S.A.; Daniel, F.B.; Chaloud, D.J.; Cade, B.S.

    2012-01-01

    Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture-forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems. ?? 2011 Springer-Verlag.

  17. Comparative FISH mapping of Daucus species (Apiaceae family)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Daucus (Apiaceae family) contains about 20 mostly diploid species with n=9, 10 and 11, including carrot (D. carota L., 2n=18). Here, we report a pachytene chromosome-based karyotype of carrot. We integrated the carrot linkage groups with chromosomes by fluorescent in situ hybridization (FI...

  18. WA DEPARTMENT OF FISH & WILDLIFE PRIORITY HABITATS AND SPECIES

    EPA Science Inventory

    This is a database that is being developed from a wildlife inventory program in progress at WDF&W. It consists of polygons or points that describe the limiting habitats of priority species, and priority habitats. The database currently covers state & private forest lands, and u...

  19. Assessment of fish abundance and species composition at selected sites in South Dakota: an overview

    USGS Publications Warehouse

    Harwood, Alison

    2010-01-01

    The U.S. Geological Survey (USGS) conducted surveys of streams throughout the State of South Dakota during 2008-09 as part of the U.S. Environmental Protection Agency?s (USEPA) National Rivers and Streams Assessment (NRSA) Program. During 2008-09, as part of the stream assessment, the USGS completed surveys of fish populations and species composition at 64 sites. Fish were inventoried at 60 of the 64 sites, but not at four of the sites because water was too low to sustain fish or specific conductivity was too high to electroshock effectively. Four of the sites were surveyed in 2000-04 during the USEPA's Environmental Monitoring and Assessment Program-West (EMAP-West) project. Two wadeable sites and two boatable sites were revisited for quality-assurance/quality-control requirements. During the study, both wadeable and boatable streams were sampled using electrofishing equipment and methods. Of the 64 sites, 62 were wadeable and 2 were boatable. Procedures for sampling wadeable streams differed slightly from procedures for boatable streams. Backpack electrofishing equipment was used for wadeable streams, whereas boat electrofishing equipment was used for boatable streams. Wadeable streams also were fished in an opposite direction than boatable streams. Several species of fish were collected during the NRSA. Species diversity ranged from 0-11 species in wadeable streams and from 6-26 species in boatable streams. Many common species were sampled during the study. The most frequently sampled fish was the sand shiner (Notropis stramineus), with 609 individuals sampled. In contrast, only one heritage species, the skipjack herring (Alosa chrysochloris), was identified during 2008-09. Common anomalies found in fish caught were parasitic lesions, "black spot disease," and tumors. When comparing the fish sampling results for the four sites visited in both 2000-04 and in 2008-09, more individuals and species were collected during 2008-09 than in 2000-04 at two sites, whereas

  20. Mercury accumulation in fish species from the Persian Gulf and in human hair from fishermen.

    PubMed

    Agah, Homira; Leermakers, Martine; Gao, Yue; Fatemi, S M R; Katal, M Mohseni; Baeyens, Willy; Elskens, Marc

    2010-10-01

    Total and methylmercury concentrations were assessed in muscle and liver of 141 fish samples from the northern part of the Persian Gulf. All fish samples belonged to five different species: grunt, flathead, greasy grouper, tiger-tooth croaker, and silver pomfret. In addition, Hg and methylmercury were analyzed in scalp hair of 19 fishermen living in the same coastal stations of the Persian Gulf and consuming several fish meals a week. Total mercury concentrations in fish muscle and liver ranged from 0.01 to 1.35 microg g(-1) w.w. and from 0.02 to 1.30 microg g(-1) w.w., respectively. In fish muscle, 3% of the Hg concentrations were higher than 0.5 microg g(-1) w.w., which corresponds to the maximum acceptable WHO level, while 9% were in the range of polluted fish (between 0.3 and 0.5 microg g(-1) w.w.). The highest mercury concentrations in fish muscle were observed in flathead fish at Abadan (average of 0.68 microg g(-1) w.w.). Methylmercury fractions in fish muscle and liver amount to 34-99% (median 64%) and 24-70% (median 43%), respectively. The mean total Hg concentration in the fishermen's scalp hair amounted to 2.9 +/- 2.2 microg g(-1), with 68% in the form of methylmercury. Ninety-five percent of the Hg levels in the fishermen's hair were below 10 microg g(-1), which is the WHO warning limit. In addition, relationships between the mercury levels in hair, on the one hand, and exposure-related factors such as Hg levels in specific fish species, regional differences, and number of fish meals, on the other hand, are discussed. It appears that a significant correlation for example exists between Hg levels human hair and fish muscle or human hair and age and that mean mercury levels in fish muscle and human hair decreased from western (Abadan) to eastern (Abbas port) coastal sites. PMID:19760084

  1. Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.

    PubMed

    King, Gregory D; Chapman, Jacqueline M; Cooke, Steven J; Suski, Cory D

    2016-03-15

    Anthropogenic alterations to terrestrial habitat (e.g., urbanization, deforestation, agriculture) can have a variety of negative effects on watercourses that flow through disturbed landscapes. Currently, the relationship between stream habitat quality and fish condition remains poorly understood. The use of physiological metrics such as glucocorticoids (GCs) provides a useful tool for quantifying these effects by relating the health of resident fishes to stream quality. To date, however, most studies that measure GC levels tend to focus on a single, large-bodied species, rather than evaluating how GCs may be influenced differently between species in a community. In this study, we measured cortisol, the glucocorticoid found in fishes, from fish tissues to quantify effects of habitat degradation on the glucocorticoid function of five species of juvenile and small-bodied stream fish which differ ecologically and phylogenetically. Largemouth bass Micropterus salmoides, brown bullhead Ameiurus nebulosus, white sucker Catostomus commersonii, pumpkinseed Lepomis gibbosus, and logperch Percina caprodes were sampled from a reference and a degraded stream. Upon capture, fish were either euthanized immediately, to quantify baseline stress parameters, or following a standardized stressor, to quantify GC responsiveness. As a result of stream degradation largemouth bass possessed altered baseline GC concentrations and brown bullhead and logperch had altered GC responses to a stressor. White sucker and pumpkinseed did not demonstrate any alteration in baseline or post-stress GC concentrations. Together, our results show that different species residing in identical habitats can demonstrate a variety of responses to environmental stress, highlighting the variation in physiological ability to cope under poor environmental conditions, as well as the difficulty of predicting GC dynamics in wild animals. Understanding the relationships between GC function, habitat quality, and

  2. The fish fauna of Anambra river basin, Nigeria: species abundance and morphometry.

    PubMed

    Odo, Gregory Ejikeme; Didigwu, Nwani Christopher; Eyo, Joseph Effiong

    2009-01-01

    The fish yields of most Nigeria inland waters are generally on the decline for causes that may range from inadequate management of the fisheries to degradation of the water bodies. Sustainable exploitation requires knowledge of the ichthyofaunal composition in the water bodies. We did a survey of fish species in Anambra river basin for 22 months. Fish samples were collected using four different gears -hook and line of size 13, caste nets, gill nets, and cages of mesh sizes of 50 mm, 75 mm, and 100 mm each. We recorded 52 fish species belonging to 17 families: 171, 236, and 169 individuals at Ogurugu, Otuocha, and Nsugbe stations respectively. Two families, Characidae, 19.5%, and Mochokidae, 11.8%, constituted the dominant fish families in the river. The dominant fish species were Citherinus citherius, 9.02%, and Alestes nurse, 7.1%. Other fish species with significant abundance were Synodontis clarias 6.9%, Macrolepidotus curvier 5.7%, Labeo coubie 5.4%, Distichodus rostrtus 4.9%, and Schilbe mystus 4.5%. The meristic features of the two most abundant fish species caught are as follows: Citharinus citharius dorsal fins 20, anal fins 30, caudal fins 21, pectoral fins, 9 and 8 ventral fins, and Alestes nurse 10 dorsal fins, 14 anal fins, 31 caudal fins, 7 pectoral fins and 6 ventral fins. The morphometric features of the two most abundant fish species are Citharinus citharius total length 300 mm, standard length 231 mm, head length 69 mm, body length 101 mm, body girth 176 mm, body weight 900 mg. Alestes nurse total length 200, standard length 140 mm, head length 60 mm, body length 80 mm, body girth 120 mm, body weight 400 mg. The most abundant animal utilizing the basin was Ardea cinerea (D3) with 22.2% occurrence (D4) and this was followed by Caprini with 13.51%, and Varanus niloticus, 10.04%. The least abundant animals utilizing basin were Chephalophus rufilatus, and Erythrocebus patas, with 0.58% each of occurrence. PMID:19637699

  3. Characterization factors for water consumption and greenhouse gas emissions based on freshwater fish species extinction.

    PubMed

    Hanafiah, Marlia M; Xenopoulos, Marguerite A; Pfister, Stephan; Leuven, Rob S E W; Huijbregts, Mark A J

    2011-06-15

    Human-induced changes in water consumption and global warming are likely to reduce the species richness of freshwater ecosystems. So far, these impacts have not been addressed in the context of life cycle assessment (LCA). Here, we derived characterization factors for water consumption and global warming based on freshwater fish species loss. Calculation of characterization factors for potential freshwater fish losses from water consumption were estimated using a generic species-river discharge curve for 214 global river basins. We also derived characterization factors for potential freshwater fish species losses per unit of greenhouse gas emission. Based on five global climate scenarios, characterization factors for 63 greenhouse gas emissions were calculated. Depending on the river considered, characterization factors for water consumption can differ up to 3 orders of magnitude. Characterization factors for greenhouse gas emissions can vary up to 5 orders of magnitude, depending on the atmospheric residence time and radiative forcing efficiency of greenhouse gas emissions. An emission of 1 ton of CO₂ is expected to cause the same impact on potential fish species disappearance as the water consumption of 10-1000 m³, depending on the river basin considered. Our results make it possible to compare the impact of water consumption with greenhouse gas emissions. PMID:21574555

  4. Sperm quality and cryopreservation of Brazilian freshwater fish species: a review.

    PubMed

    Viveiros, A T M; Godinho, H P

    2009-03-01

    The Brazilian freshwater fish diversity is the richest in the world. Only 0.7% of all Brazilian species have had any aspect of their sperm biology addressed up to this date. The majority of the fish species described in this review migrate during the spawning season (a phenomenon known as piracema). Urbanization, pollution, hydroelectric dams and deforestation are some of the causes of stock depletion or even local extinction of some of these species. The knowledge concerning sperm quality and minimum sperm:egg ratio is important to maximize the use of males without reducing hatching rates. Furthermore, sperm cryopreservation and gene banking can guarantee the conservation of genetic diversity and development of adequate breeding programs of native fish species. In this review, we present and evaluate the existing information on Brazilian fish species that have been subject to sperm quality and cryopreservation studies. The following parameters were evaluated: volume of extractable sperm, sperm motility, sperm concentration, freezing media, freezing methods, and post-thaw sperm quality. Although the existing protocols yield relatively high post-thaw motility and fertilization rates, the use of cryopreserved sperm in routine hatchery production is still limited in Brazil. PMID:19189240

  5. Testing the influence of environmental heterogeneity on fish species richness in two biogeographic provinces

    PubMed Central

    Proulx, Raphaël; Cabana, Gilbert; Rodríguez, Marco A.

    2015-01-01

    Environmental homogenization in coastal ecosystems impacted by human activities may be an important factor explaining the observed decline in fish species richness. We used fish community data (>200 species) from extensive surveys conducted in two biogeographic provinces (extent >1,000 km) in North America to quantify the relationship between fish species richness and local (grain <10 km2) environmental heterogeneity. Our analyses are based on samples collected at nearly 800 stations over a period of five years. We demonstrate that fish species richness in coastal ecosystems is associated locally with the spatial heterogeneity of environmental variables but not with their magnitude. The observed effect of heterogeneity on species richness was substantially greater than that generated by simulations from a random placement model of community assembly, indicating that the observed relationship is unlikely to arise from veil or sampling effects. Our results suggest that restoring or actively protecting areas of high habitat heterogeneity may be of great importance for slowing current trends of decreasing biodiversity in coastal ecosystems. PMID:25699209

  6. Radiometric analysis of samples of domestic fish species and radiological implications.

    PubMed

    Tahir, S N A; Alaamer, A S; Ayub, M; Khan, M Z

    2010-05-01

    Radiometric analysis of samples of commonly sold fish species in Pakistan were carried out for the measurement of concentrations of naturally occurring and artificial radionuclides. For this purpose, a high resolution Ge detector was employed. Mean concentrations of (226)Ra, (228)Ra, and (40)K in fish samples were 1.3 +/- 0.3, 1.0 +/- 0.2, and 90 +/- 15 Bq kg, respectively, whereas concentration of (137)Cs was not detected. The annual effective dose due to ingestion of these radionuclides through fish diet was evaluated to be 2.3 microSv y(-1). This value of effective dose is found much below the average radiation dose of 0.29 mSv y(-1) received per capita worldwide through ingestion of natural radionuclides during the consumption of food assessed by the United Nations Scientific Committee on the Effects of Atomic Radiation. It is concluded that fish supplies in the markets from the domestic fish farms are free from radiological risks. These results may contribute to the national and regional data regarding radioactivity levels in domestic fish species. PMID:20386204

  7. Assessment of metal concentrations in commercially important fish species in Black Sea.

    PubMed

    Alkan, Nigar; Alkan, Ali; Gedik, Kenan; Fisher, Andrew

    2016-03-01

    In the present study, concentrations of arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), manganese (Mn), nickel (Ni), lead (Pb), and zinc (Zn) were measured in the muscle, gill, and gonads of the pelagic fish species Trachurus mediterraneus, Engraulis encrasicolus ponticus, and Sprattus sprattus that are important both commercially and for the ecosystems in the Black Sea. The samples were collected during 2011. The metals were determined using inductively coupled plasma mass spectrometry (ICP-MS) following an acid digestion. The highest concentrations of As, Cd, Co, Cr, Cu, Pb, and Zn were found in E. encrasicolus ponticus, whereas the greatest concentrations of Ni were found in T. mediterraneus and Mn in S. sprattus. Results showed that average metal concentrations in the tissues of T. mediterraneus, E. encrasicolus ponticus, and S. sprattus decreased in the order gill > gonad > muscle, gonad > gill > muscle, and gill > gonad > muscle, respectively, for the three species. When metal concentrations of fish tissues were compared between fish gender, there were only statistical differences in the gonads of the studied fish species (p < 0.05). The present study demonstrated that the metals have different correlations with condition factor (CF) and gonadosomatic index (GSI) of the fish species. Cr showed statistically important positive correlation to the GSI in male T. mediterraneus. Co showed statistically important positive correlation to CF in female E. encrasicolus ponticus, and also Co and Cd showed correlation to CF in male T. mediterraneus. Cd concentrations in the muscle tissues of the fish species were above the maximum acceptable concentration for human consumption. PMID:24193046

  8. Do spates determine species? The influence of altered hydrology on stream fish assemblages.

    NASA Astrophysics Data System (ADS)

    Helms, B.; Schoonover, J.; Feminella, J.

    2005-05-01

    We investigated the influence of short-term hydrologic regimes on fish assemblages in 18 watersheds (500-2500 ha, Lower Piedmont ecoregion) along an urbanization gradient north of Columbus, Georgia, USA. We monitored stream hydrology continuously with pressure-transducers for 1 y and also quantified fish and habitat variables in representative 100-m reaches in each watershed. We characterized each stream's hydrograph using a suite of 44 metrics, broadly characterized as Magnitude, Frequency, Duration, Flashiness, or Predictability measures. Fish species richness, diversity, health, proportion of lithophilic spawners (sensitive guild) and overall assemblage integrity (IBI) declined with an increasing number of spates (Frequency). In addition, the proportion of sunfish species, primarily Lepomis auritus and L. macrochirus, increased with increasing numbers of spates, suggesting that hydrologically altered streams are numerically dominated by tolerant species. Overall, Frequency measures were the most informative of all hydrological predictors, suggesting spate frequency is potentially a strong driver of fish assemblage structure. Interestingly, not all watersheds exhibiting a high number of spates were highly urbanized, thus factors other than % impervious surface, which was highest in the urban watersheds, influence the hydrologic regime. Overall, our data suggest a functional connection between land use change, altered stream hydrology, and shifts in fish assemblages.

  9. Effects of exposure to seismic airgun use on hearing of three fish species

    NASA Astrophysics Data System (ADS)

    Popper, Arthur N.; Smith, Michael E.; Cott, Peter A.; Hanna, Bruce W.; MacGillivray, Alexander O.; Austin, Melanie E.; Mann, David A.

    2005-06-01

    Seismic airguns produce considerable amounts of acoustic energy that have the potential to affect marine life. This study investigates the effects of exposure to a 730 in.3 airgun array on hearing of three fish species in the Mackenzie River Delta, the northern pike (Esox lucius), broad whitefish (Coregonus nasus), and lake chub (Couesius plumbeus). Fish were placed in cages in the 1.9 m of water and exposed to five or 20 airgun shots, while controls were placed in the same cage but without airgun exposure. Hearing in both exposed and control fish were then tested using the auditory brainstem response (ABR). Threshold shifts were found for exposed fish as compared to controls in the northern pike and lake chub, with recovery within 24 hours of exposure, while there was no threshold shift in the broad whitefish. It is concluded that these three species are not likely to be substantially impacted by exposure to an airgun array used in a river seismic survey. Care must be taken, however, in extrapolation to other species and to fishes exposed to airguns in deeper water or where the animals are exposed to a larger number of airgun shots over a longer period of time. .

  10. Fish species from a micro-tidal delta in the Caribbean Sea.

    PubMed

    Correa-Herrera, T; Jiménez-Segura, L F; Barletta, M

    2016-07-01

    A total of 66 fish species belonging to 32 families were recorded between November 2012 and April 2014 in the southern arm of the delta to the Atrato River. Total length (LT ; range: 1·7-48 cm), total mass (MT ), LT and MT relationships (b values ranged from 1·8 to 3·7, mostly with negative allometric growth), and LT frequency (for 25 species) were estimated for freshwater, estuarine and marine species. LT and MT of Porichthys pauciradiatus and Membras argentea are given for the first time and maximum LT records for 14 species exceed those in the literature. PMID:27401485

  11. Global mismatch between species richness and vulnerability of reef fish assemblages.

    PubMed

    Parravicini, Valeriano; Villéger, Sébastien; McClanahan, Tim R; Arias-González, Jesus Ernesto; Bellwood, David R; Belmaker, Jonathan; Chabanet, Pascale; Floeter, Sergio R; Friedlander, Alan M; Guilhaumon, François; Vigliola, Laurent; Kulbicki, Michel; Mouillot, David

    2014-09-01

    The impact of anthropogenic activity on ecosystems has highlighted the need to move beyond the biogeographical delineation of species richness patterns to understanding the vulnerability of species assemblages, including the functional components that are linked to the processes they support. We developed a decision theory framework to quantitatively assess the global taxonomic and functional vulnerability of fish assemblages on tropical reefs using a combination of sensitivity to species loss, exposure to threats and extent of protection. Fish assemblages with high taxonomic and functional sensitivity are often exposed to threats but are largely missed by the global network of marine protected areas. We found that areas of high species richness spatially mismatch areas of high taxonomic and functional vulnerability. Nevertheless, there is strong spatial match between taxonomic and functional vulnerabilities suggesting a potential win-win conservation-ecosystem service strategy if more protection is set in these locations. PMID:24985880

  12. A new fish species of the subfamily Serraninae (Perciformes, Serranidae) from the Philippines.

    PubMed

    Williams, Jeffrey T; Carpenter, Kent E

    2015-01-01

    A new species of serranine fish is described from the Philippine Islands. A single specimen of a new species, Chelidoperca santosi, captured by fishermen working in Palawan waters was discovered in the public fish market in Iloilo City, Panay, Philippines. Two additional specimens of the new species, also from the Philippines, were subsequently discovered in the collections of the Museum Victoria, Australia. The new species is currently known only from the Philippines and is characterized by its distinctive coloration with a row of four small dark spots on the snout (two in front of each eye) and two dark spots on the chin (one on each side of the symphysis of the dentaries), a white anal fin with six large yellow spots separated by broad white interspaces and a narrow yellow distal border, caudal fin with narrow yellow bars and a yellowish distal margin and no dark spots, and a combination of meristic and morphological characters.  PMID:25661613

  13. Current knowledge on the photoneuroendocrine regulation of reproduction in temperate fish species.

    PubMed

    Migaud, H; Davie, A; Taylor, J F

    2010-01-01

    Seasonality is an important adaptive trait in temperate fish species as it entrains or regulates most physiological events such as reproductive cycle, growth profile, locomotor activity and key life-stage transitions. Photoperiod is undoubtedly one of the most predictable environmental signals that can be used by most living organisms including fishes in temperate areas. This said, however, understanding of how such a simple signal can dictate the time of gonadal recruitment and spawning, for example, is a complex task. Over the past few decades, many scientists attempted to unravel the roots of photoperiodic signalling in teleosts by investigating the role of melatonin in reproduction, but without great success. In fact, the hormone melatonin is recognized as the biological time-keeping hormone in fishes mainly due to the fact that it reflects the seasonal variation in daylength across the whole animal kingdom rather than the existence of direct evidences of its role in the entrainment of reproduction in fishes. Recently, however, some new studies clearly suggested that melatonin interacts with the reproductive cascade at a number of key steps such as through the dopaminergic system in the brain or the synchronization of the final oocyte maturation in the gonad. Interestingly, in the past few years, additional pathways have become apparent in the search for a fish photoneuroendocrine system including the clock-gene network and kisspeptin signalling and although research on these topics are still in their infancy, it is moving at great pace. This review thus aims to bring together the current knowledge on the photic control of reproduction mainly focusing on seasonal temperate fish species and shape the current working hypotheses supported by recent findings obtained in teleosts or based on knowledge gathered in mammalian and avian species. Four of the main potential regulatory systems (light perception, melatonin, clock genes and kisspeptin) in fish reproduction

  14. Mercury Contamination in an Indicator Fish Species from Andean Amazonian Rivers Affected by Petroleum Extraction.

    PubMed

    Webb, Jena; Coomes, Oliver T; Mainville, Nicolas; Mergler, Donna

    2015-09-01

    Elevated mercury (Hg) concentrations in fish from Amazonia have been associated with gold-mining, hydroelectric dams and deforestation but few studies consider the role of petroleum extraction. Hg levels were determined in fish samples collected in three river basins in Ecuador and Peru with contrasting petroleum exploitation and land-use characteristics. The non-migratory, piscivorous species, Hoplias malabaricus, was used as a bioindicator. The rate of Hg increase with body weight for this species was significantly higher on the Corrientes River, near the site of a recent oil spill, than on the other two rivers. In the absence of substantial deforestation and other anthropogenic sources in the Corrientes River basin, this finding suggests that oil contamination in Andean Amazonia may have a significant impact on Hg levels in fish. PMID:26205230

  15. Chinese Tallow: Invading the Southeastern Coastal Plain

    USGS Publications Warehouse

    U.S. Geological Survey

    2000-01-01

    Chinese tallow is an ornamental tree with colorful autumn foliage that can survive full sunlight and shade, flooding, drought, and in some cases fire. To horticulturists this kind of tree sounds like a dream, but to ecologists, land managers, and land owners this kind of tree can be a nightmare, especially when it invades an area and takes over native vegetation. Chinese tallow (Triadica sebifera), a nonnative tree from China, is currently transforming the southeastern Coastal Plain. Over the last 30 years, Chinese tallow has become a common tree in old fields and bottomland swamps of coastal Louisiana. Several studies at the U.S. Geological Survey's National Wetlands Research Center (NWRC), Lafayette, Louisiana, are aimed at understanding the factors that contribute to Chinese tallow growth, spread, and management. When tallow invades, it eventually monopolizes an area, creating a forest without native animal or plant species. This tree exhibits classic traits of most nonnative invaders: it is attractive so people want to distribute it, it has incredible resiliency, it grows quickly and in a variety of soils, and it is resistant to pests. In the coastal prairie of Louisiana and Texas, Chinese tallow can grow up to 30 feet and shade out native sun-loving prairie species. The disappearing of prairie species is troublesome because less than 1% of original coastal prairie remains, and in Louisiana, less than 500 of the original 2.2 million acres still exist. Tallow reproduces and grows quickly and can cause large-scale ecosystem modification (fig. 1). For example, when it completely replaces native vegetation, it has a negative effect on birds by degrading the habitat. Besides shading out grasses that cattle like to eat, it can also be potentially harmful to humans and animals because of its berries (fig. 2) and plant sap that contain toxins. There is some concern its leaves may shed toxins that change the soil chemistry and make it difficult for other plants to grow.

  16. 78 FR 1200 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-08

    ...Notice is hereby given that NMFS has received an application for a permit for scientific purposes and to enhance the propagation and survival of a listed species under the Endangered Species Act of 1973, as amended (ESA), from the California Department of Fish and Game (CDFG) and PacifiCorp for a 10 year period. As part of this permit application, the CDFG has submitted a draft HGMP. The HGMP......

  17. Future land use threats to range-restricted fish species in the United States

    DOE PAGESBeta

    Januchowski-Hartley, Stephanie R.; Holtz, Lauren A.; Martinuzzi, Sebastian; McIntyre, Peter B.; Radeloff, Volker C.; Pracheil, Brenda M.

    2016-03-04

    Land use change is one major threat to freshwater biodiversity, and land use change scenarios can help to assess threats from future land use change, thereby guiding proactive conservation decisions. Furthermore, our goal was to identify which range-restricted freshwater fish species are most likely to be affected by land use change and to determine where threats to these species from future land use change in the conterminous United States are most pronounced.

  18. Vast assembly of vocal marine mammals from diverse species on fish spawning ground.

    PubMed

    Wang, Delin; Garcia, Heriberto; Huang, Wei; Tran, Duong D; Jain, Ankita D; Yi, Dong Hoon; Gong, Zheng; Jech, J Michael; Godø, Olav Rune; Makris, Nicholas C; Ratilal, Purnima

    2016-03-17

    Observing marine mammal (MM) populations continuously in time and space over the immense ocean areas they inhabit is challenging but essential for gathering an unambiguous record of their distribution, as well as understanding their behaviour and interaction with prey species. Here we use passive ocean acoustic waveguide remote sensing (POAWRS) in an important North Atlantic feeding ground to instantaneously detect, localize and classify MM vocalizations from diverse species over an approximately 100,000 km(2) region. More than eight species of vocal MMs are found to spatially converge on fish spawning areas containing massive densely populated herring shoals at night-time and diffuse herring distributions during daytime. We find the vocal MMs divide the enormous fish prey field into species-specific foraging areas with varying degrees of spatial overlap, maintained for at least two weeks of the herring spawning period. The recorded vocalization rates are diel (24 h)-dependent for all MM species, with some significantly more vocal at night and others more vocal during the day. The four key baleen whale species of the region: fin, humpback, blue and minke have vocalization rate trends that are highly correlated to trends in fish shoaling density and to each other over the diel cycle. These results reveal the temporospatial dynamics of combined multi-species MM foraging activities in the vicinity of an extensive fish prey field that forms a massive ecological hotspot, and would be unattainable with conventional methodologies. Understanding MM behaviour and distributions is essential for management of marine ecosystems and for accessing anthropogenic impacts on these protected marine species. PMID:26934221

  19. Predicting assemblages and species richness of endemic fish in the upper Yangtze River.

    PubMed

    He, Yongfeng; Wang, Jianwei; Lek-Ang, Sithan; Lek, Sovan

    2010-09-01

    The present work describes the ability of two modeling methods, Classification and Regression Tree (CART) and Random Forest (RF), to predict endemic fish assemblages and species richness in the upper Yangtze River, and then to identify the determinant environmental factors contributing to the models. The models included 24 predictor variables and 2 response variables (fish assemblage and species richness) for a total of 46 site units. The predictive quality of the modeling approaches was judged with a leave-one-out validation procedure. There was an average success of 60.9% and 71.7% to assign each site unit to the correct assemblage of fish, and 73% and 84% to explain the variance in species richness, by using CART and RF models, respectively. RF proved to be better than CART in terms of accuracy and efficiency in ecological applications. In any case, the mixed models including both land cover and river characteristic variables were more powerful than either individual one in explaining the endemic fish distribution pattern in the upper Yangtze River. For instance, altitude, slope, length, discharge, runoff, farmland and alpine and sub-alpine meadow played important roles in driving the observed endemic fish assemblage structure, while farmland, slope grassland, discharge, runoff, altitude and drainage area in explaining the observed patterns of endemic species richness. Therefore, the various effects of human activity on natural aquatic ecosystems, in particular, the flow modification of the river and the land use changes may have a considerable effect on the endemic fish distribution patterns on a regional scale. PMID:20541238

  20. METAL TOXICITY TO EMBRYOS AND LARVAE OF EIGHT SPECIES OF FRESHWATER FISH--II: COPPER

    EPA Science Inventory

    Fish larvae and early juveniles of all species tested (brook trout, rainbow trout, brown trout, lake trout, northern pike, white sucker, herring and smallmouth bass) were more sensitive to copper than the embryos. Embryo survival was affected only at the higher concentrations tes...

  1. 77 FR 24466 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-24

    ... provide a foundation for understanding these populations' life histories--the knowledge of which is... prey to juvenile wild Chinook during their neritic life history stage. The KWIAHT proposes to use beach... fish species composition, distribution, growth, condition, pathology, toxicology, and life...

  2. 76 FR 71315 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-17

    ... National Oceanic and Atmospheric Administration RIN 0648-XA824 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and ] Atmospheric... chemistry (e.g., temperature, dissolved oxygen, nutrients, pathogens); (2) water level and velocity;...

  3. 77 FR 61562 - Atlantic Highly Migratory Species; 2013 Atlantic Shark Commercial Fishing Season

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-10

    ... accompanied the 2011 shark quota specifications rule (75 FR 76302; December 8, 2010). Thus, NMFS proposes to.... Shark stocks that are overfished, have overfishing occurring, or that have an unknown stock status, or... Species; 2013 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service...

  4. 75 FR 57240 - Atlantic Highly Migratory Species; 2011 Commercial Fishing Season and Adaptive Management...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-20

    ...This proposed rule would establish opening dates and adjust quotas for the 2011 fishing season for sandbar sharks, non-sandbar large coastal sharks (LCS), small coastal sharks (SCS), and pelagic sharks. Quotas will be adjusted based on the framework established in Amendment 2 to the 2006 Consolidated Highly Migratory Species Fishery Management Plan, which requires adjustments for any over-......

  5. 76 FR 72678 - Atlantic Highly Migratory Species; Exempted Fishing, Scientific Research, Display, and Chartering...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-25

    ...NMFS announces its intent to issue Exempted Fishing Permits (EFPs), Scientific Research Permits (SRPs), Display Permits, Letters of Acknowledgment (LOAs), and Chartering Permits for the collection of Atlantic Highly Migratory Species (HMS) in 2012. In general, EFPs and related permits would authorize collection of a limited number of tunas, swordfish, billfishes, and sharks from Federal waters......

  6. Ecological tracers reveal resource convergence among prey fish species in a large lake ecosystem

    USGS Publications Warehouse

    Paterson, Gord; Rush, Scott A.; Arts, Michael T.; Drouillard, Ken G.; Haffner, G. Doug; Johnson, Tim B.; Lantry, Brian F.; Hebert, Craig E.; McGoldrick, Daryl J.; Backus, Sean M.; Fisk, Aaron T.

    2014-01-01

    5. These results indicate a temporal convergence of the food niche, whereas food partitioning has historically supported the coexistence of prey fish species in Lake Ontario. This convergence is consistent with changes in food-web processes associated with the invasion of dreissenid mussels.

  7. Metal speciation in sediment and their bioaccumulation in fish species of three urban rivers in Bangladesh.

    PubMed

    Islam, Md Saiful; Ahmed, Md Kawser; Raknuzzaman, Mohammad; Habibullah-Al-Mamun, Md; Masunaga, Shigeki

    2015-01-01

    Six trace metals (chromium [Cr], nickel [Ni], copper [Cu], arsenic [As], cadmium [Cd] and lead [Pb]) were measured in sediments and soft tissues of three commonly consumed fish species (Channa punctatus, Heteropneustes fossilis, and Trichogaster fasciata) collected from three urban rivers around Dhaka City, Bangladesh. The abundance of total metals in sediments varied in the decreasing order of Cr > Ni > Pb > Cu > As > Cd. Sequential extraction tests showed that the studied metals were predominantly associated with the residual fraction followed by the organically bound phase. The range of metal concentration in fish species were as follows: Cr (0.75-4.8), Ni (0.14-3.1), Cu (1.1-7.2), As (0.091-0.53), Cd (0.008-0.13), and Pb (0.052-2.7 mg/kg wet weight [ww]). The rank of biota-sediment accumulation factor for fish species were in the descending order of Cu > As > Pb > Ni > Cr > Cd. Metal concentrations in fish exceeded the international permissible standards suggesting that these species are not safe for human consumption. PMID:25213477

  8. Introduced species and abiotic factors affect longitudinal variation in small fish assemblages in the Wind River watershed, Wyoming

    USGS Publications Warehouse

    Lionberger, P.S.; Hubert, W.A.

    2007-01-01

    We assessed longitudinal variation in small fish assemblages in the Wind River watershed upstream from Boysen Reservoir, Wyoming and into the reservoir. Twenty-six species were found in the study area, and 12 of the species were believed to have been introduced since settlement by Europeans. Additions and losses of fish species occurred with downstream progression, especially the addition of introduced species. Introduced species increased from 25% of the total number of species in the upper-most river segment (31.5-35.3 km upstream from the reservoir), to 46% in the river segment immediately upstream from the reservoir, to 48% in the reservoir. The most abundant species in the riverine portion of the watershed was the introduced sand shiner (Notropis stramineus). The results suggest that cyprinid species introduced to the upstream watershed and Boysen Reservoir are influencing small fish assemblages upstream from the reservoir and may be impacting native fishes, particularly native cyprinids.

  9. Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding.

    PubMed

    Evans, Nathan T; Olds, Brett P; Renshaw, Mark A; Turner, Cameron R; Li, Yiyuan; Jerde, Christopher L; Mahon, Andrew R; Pfrender, Michael E; Lamberti, Gary A; Lodge, David M

    2016-01-01

    Freshwater fauna are particularly sensitive to environmental change and disturbance. Management agencies frequently use fish and amphibian biodiversity as indicators of ecosystem health and a way to prioritize and assess management strategies. Traditional aquatic bioassessment that relies on capture of organisms via nets, traps and electrofishing gear typically has low detection probabilities for rare species and can injure individuals of protected species. Our objective was to determine whether environmental DNA (eDNA) sampling and metabarcoding analysis can be used to accurately measure species diversity in aquatic assemblages with differing structures. We manipulated the density and relative abundance of eight fish and one amphibian species in replicated 206-L mesocosms. Environmental DNA was filtered from water samples, and six mitochondrial gene fragments were Illumina-sequenced to measure species diversity in each mesocosm. Metabarcoding detected all nine species in all treatment replicates. Additionally, we found a modest, but positive relationship between species abundance and sequencing read abundance. Our results illustrate the potential for eDNA sampling and metabarcoding approaches to improve quantification of aquatic species diversity in natural environments and point the way towards using eDNA metabarcoding as an index of macrofaunal species abundance. PMID:26032773

  10. MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

    PubMed Central

    Miya, M.; Sato, Y.; Fukunaga, T.; Sado, T.; Poulsen, J. Y.; Sato, K.; Minamoto, T.; Yamamoto, S.; Yamanaka, H.; Araki, H.; Kondoh, M.; Iwasaki, W.

    2015-01-01

    We developed a set of universal PCR primers (MiFish-U/E) for metabarcoding environmental DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial genome (mitogenome) sequences from 880 species, supplemented by partial mitogenome sequences from 160 elasmobranchs (sharks and rays). The primers target a hypervariable region of the 12S rRNA gene (163–185 bp), which contains sufficient information to identify fishes to taxonomic family, genus and species except for some closely related congeners. To test versatility of the primers across a diverse range of fishes, we sampled eDNA from four tanks in the Okinawa Churaumi Aquarium with known species compositions, prepared dual-indexed libraries and performed paired-end sequencing of the region using high-throughput next-generation sequencing technologies. Out of the 180 marine fish species contained in the four tanks with reference sequences in a custom database, we detected 168 species (93.3%) distributed across 59 families and 123 genera. These fishes are not only taxonomically diverse, ranging from sharks and rays to higher teleosts, but are also greatly varied in their ecology, including both pelagic and benthic species living in shallow coastal to deep waters. We also sampled natural seawaters around coral reefs near the aquarium and detected 93 fish species using this approach. Of the 93 species, 64 were not detected in the four aquarium tanks, rendering the total number of species detected to 232 (from 70 families and 152 genera). The metabarcoding approach presented here is non-invasive, more efficient, more cost-effective and more sensitive than the traditional survey methods. It has the potential to serve as an alternative (or complementary) tool for biodiversity monitoring that revolutionizes natural resource management and ecological studies of fish communities on larger spatial and temporal scales. PMID:26587265